Citrus Sinensis ID: 040741

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------
Protein Sequence
MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccccccccccccccEEccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHccccEEcHHHHHcccccccccccccccccccccccccccccEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccccccEEEEEccccHHHHHHcccccccccccccccccccHHHHHHHcccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccEEEEccccccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccHEHHHHHHHcccccEEEEEccccHHHHHHHHHHHHcccEEEEEcEcccccEcHHHHHHHccccEEEEEEEcEccccccEccHHHHHHHHHHcccEEEEEcccccccccccHHHHcccEEEEEHHHcccccccEEEEEcHHHHHHccccccccccccccccccccccHEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHcccccccEEEEEEEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccEEEEccc
Coil and Loop (DISEMBL)
MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVstayepqedqngitlkgvriagrplyldmqattpvdprvldamlpfylsrygnphsrthlfgwESEVAVETARSQIADLigaspkeiiftsgatesnnvsIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQegfeitylpvgadgiVNLDELRaairpdtgLISVMAVNneigviqpmEEIGQICkefkipfhtdaaqalgkipvdvEKWNVSLMSlsghkiygpkgvgalymrrrprirveplingggqergirsgtlptplivgFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVssgsactsaslepSYVLRALgvdedmahtsirfgigrfttEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Flexible Loop (DISEMBL)
MASKLIASTLRKTLTkaaktagvrslSNATAAAVstayepqedqngitLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTsgatesnnvsiKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSlsghkiygpkgvgalyMRRRPRIRveplingggqergirsgtlptpLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRfgigrftteaeVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Low Complexity Region (SEG)
MASKLIASTLRktltkaaktaGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Disordered region (IsUnstruct)
*********************************************GITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQW***
Disordered Region (DISOPRED)
********************************************************RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQW***
Disordered Region (DISEMBL)
MASKLIASTLRKT**************************PQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEV**********ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Disordered Region (DISPRO)
*******************************************QNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSG**CTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	457	2.2.26 [Sep-21-2011]
O49543	453	Cysteine desulfurase 1, m	yes	no	0.989	0.997	0.772	0.0
Q5RDE7	457	Cysteine desulfurase, mit	yes	no	0.877	0.877	0.695	1e-175
Q9Y697	457	Cysteine desulfurase, mit	yes	no	0.877	0.877	0.695	1e-175
Q99P39	451	Cysteine desulfurase, mit	yes	no	0.877	0.889	0.688	1e-174
Q9Z1J3	451	Cysteine desulfurase, mit	yes	no	0.877	0.889	0.688	1e-173
Q9VKD3	462	Probable cysteine desulfu	yes	no	0.993	0.982	0.633	1e-172
C3PNQ8	410	Cysteine desulfurase OS=R	yes	no	0.875	0.975	0.65	1e-165
A8EYH9	410	Cysteine desulfurase OS=R	yes	no	0.875	0.975	0.645	1e-164
Q92HP1	410	Cysteine desulfurase OS=R	yes	no	0.875	0.975	0.642	1e-163
A8F204	410	Cysteine desulfurase OS=R	yes	no	0.875	0.975	0.64	1e-163

>sp|O49543|NFS1_ARATH Cysteine desulfurase 1, mitochondrial OS=Arabidopsis thaliana GN=NIFS PE=1 SV=1

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/458 (77%), Positives = 404/458 (88%), Gaps = 6/458 (1%)

Query: 1   MASKLIASTLRKTLTKAAKT-AGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPL 59
           MASK+I++T+R+TLTK   T +  R LS A AAA    YE +     I +KGVRI+GRPL
Sbjct: 1   MASKVISATIRRTLTKPHGTFSRCRYLSTA-AAATEVNYEDE----SIMMKGVRISGRPL 55

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLDMQATTP+DPRV DAM    +  YGNPHSRTHL+GWE+E AVE AR+Q+A LI ASPK
Sbjct: 56  YLDMQATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARNQVAKLIEASPK 115

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           EI+F SGATE+NN+++KGVMHFYKD K+HVITTQTEHKCVLDSCRHLQQEGFE+TYLPV 
Sbjct: 116 EIVFVSGATEANNMAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 175

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
            DG+V+L+ LR AIRPDTGL+S+MAVNNEIGV+QPMEEIG ICKE  +PFHTDAAQA+GK
Sbjct: 176 TDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIGMICKEHNVPFHTDAAQAIGK 235

Query: 240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
           IPVDV+KWNV+LMS+S HKIYGPKGVGALY+RRRPRIR+EPL+NGGGQERG+RSGT  T 
Sbjct: 236 IPVDVKKWNVALMSMSAHKIYGPKGVGALYVRRRPRIRLEPLMNGGGQERGLRSGTGATQ 295

Query: 300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
            IVGFG+ACE+A KEM+YD K I  L +RLLNG++EKLDGVVVNGSM+ RY+GNLNLSFA
Sbjct: 296 QIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDSRYVGNLNLSFA 355

Query: 360 YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419
           YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT+ E+
Sbjct: 356 YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEI 415

Query: 420 DRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           D+A+ELTVKQVEKLREMSPLYEMVKEGIDIK IQW+QH
Sbjct: 416 DKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. Supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 7

>sp|Q5RDE7|NFS1_PONAB Cysteine desulfurase, mitochondrial OS=Pongo abelii GN=NFS1 PE=2 SV=1

 Score =  616 bits (1589), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/401 (69%), Positives = 343/401 (85%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct: 57  RPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 116

Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
            P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct: 117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYL 176

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA
Sbjct: 177 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQA 236

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct: 237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
           PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  E  Y G +NL
Sbjct: 297 PTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPEHHYPGCINL 356

Query: 357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFG+GRFTTE
Sbjct: 357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGVGRFTTE 416

Query: 417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
            EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct: 417 EEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9Y697|NFS1_HUMAN Cysteine desulfurase, mitochondrial OS=Homo sapiens GN=NFS1 PE=1 SV=3

 Score =  615 bits (1587), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 279/401 (69%), Positives = 343/401 (85%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct: 57  RPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 116

Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
            P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct: 117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYL 176

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA
Sbjct: 177 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQA 236

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct: 237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
           PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  +  Y G +NL
Sbjct: 297 PTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINL 356

Query: 357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct: 357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 416

Query: 417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
            EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct: 417 EEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q99P39|NFS1_RAT Cysteine desulfurase, mitochondrial OS=Rattus norvegicus GN=Nfs1 PE=2 SV=1

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 276/401 (68%), Positives = 342/401 (85%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           RPLY+D++ATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct: 51  RPLYMDVRATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 110

Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
            P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYL
Sbjct: 111 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYL 170

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIGQIC   K+ FHTDAAQA
Sbjct: 171 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKLYFHTDAAQA 230

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP+DV    + LMS+SGHK+YGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct: 231 VGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 290

Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
           PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NL
Sbjct: 291 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLIQKIMKNLPDVVMNGDPKQHYPGCINL 350

Query: 357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct: 351 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 410

Query: 417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
            EVD  ++  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct: 411 EEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9Z1J3|NFS1_MOUSE Cysteine desulfurase, mitochondrial OS=Mus musculus GN=Nfs1 PE=2 SV=2

 Score =  607 bits (1565), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 276/401 (68%), Positives = 339/401 (84%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct: 51  RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 110

Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
            P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYL
Sbjct: 111 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYL 170

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EI QIC   K+ FHTDAAQA
Sbjct: 171 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIRQICSSRKVYFHTDAAQA 230

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP+DV    + LMS+SGHK+YGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct: 231 VGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 290

Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
           PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NL
Sbjct: 291 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLVQKIMKNLPDVVMNGDPKQHYPGCINL 350

Query: 357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYV RA+G DED+AH+SIRFGIGRFTTE
Sbjct: 351 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVFRAIGTDEDLAHSSIRFGIGRFTTE 410

Query: 417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
            EVD   E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct: 411 EEVDYTAEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters. May be involved in the biosynthesis of molybdenum cofactor.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q9VKD3|NFS1_DROME Probable cysteine desulfurase, mitochondrial OS=Drosophila melanogaster GN=CG12264 PE=2 SV=1

 Score =  605 bits (1559), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 289/456 (63%), Positives = 358/456 (78%), Gaps = 2/456 (0%)

Query: 4   KLIASTLRKTLTKA-AKTAGVRSLSNATAAA-VSTAYEPQEDQNGITLKGVRIAGRPLYL 61
           ++ A  LR   T A A      + S+ TAA   +T+ E +E Q    +K  +  GRPLYL
Sbjct: 7   RIQAQVLRSRATNALANVVRHEATSSRTAAKPAATSKEFRERQVRFNIKNEQTEGRPLYL 66

Query: 62  DMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI 121
           D QATTP+DPRVLDAMLP+  + YGNPHSRTH +GWE+E AVE AR Q+A LIGA PKEI
Sbjct: 67  DAQATTPMDPRVLDAMLPYLTNFYGNPHSRTHAYGWETESAVEKAREQVATLIGADPKEI 126

Query: 122 IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD 181
           IFTSGATESNN+++KGV  FY  KKRHVITTQTEHKCVLDSCR L+ EGF++TYLPV A+
Sbjct: 127 IFTSGATESNNIAVKGVARFYGTKKRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLAN 186

Query: 182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP 241
           G+++L +L   I  +T L+S+M VNNEIGV QP++EIG++C+  ++ FHTDAAQA+GK+P
Sbjct: 187 GLIDLQQLEETITSETSLVSIMTVNNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVP 246

Query: 242 VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLI 301
           +DV   N+ LMS+SGHKIYGPKGVGALY+RRRPR+R+EP+ +GGGQERG+RSGT+P PL 
Sbjct: 247 LDVNAMNIDLMSISGHKIYGPKGVGALYVRRRPRVRLEPIQSGGGQERGLRSGTVPAPLA 306

Query: 302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV 361
           VG G+A E++ +EMDYD K +  L +RLL+ I   L  V+ NG  +  Y G LNLSFAYV
Sbjct: 307 VGLGAAAELSLREMDYDKKWVDFLSNRLLDRISSALPHVIRNGDAKATYNGCLNLSFAYV 366

Query: 362 EGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR 421
           EGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTT  EVD 
Sbjct: 367 EGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTVEEVDY 426

Query: 422 AIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
             +  +K VE+LREMSPL+EMV+EGID+K IQW+QH
Sbjct: 427 TADKCIKHVERLREMSPLWEMVQEGIDLKTIQWSQH 462

Catalyzes the removal of elemental sulfur from cysteine to produce alanine. It supplies the inorganic sulfur for iron-sulfur (Fe-S) clusters.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|C3PNQ8|ISCS_RICAE Cysteine desulfurase OS=Rickettsia africae (strain ESF-5) GN=iscS PE=3 SV=1

 Score =  580 bits (1496), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 260/400 (65%), Positives = 333/400 (83%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           P+Y+D QATTP+DPRV++AMLP++ +++GNPHSR+H FGWE+E AVE ARS +A LIGA 
Sbjct: 11  PIYMDYQATTPIDPRVMEAMLPYFTTKFGNPHSRSHSFGWEAENAVEEARSMVAKLIGAD 70

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
            KEIIFTSGATESNN++IKG+  FY +KK H+IT  +EHKCVLD+CRHL+QEG +ITYLP
Sbjct: 71  TKEIIFTSGATESNNLAIKGIAKFYSNKKNHIITVVSEHKCVLDACRHLEQEGIKITYLP 130

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           +  +GI++L+ L+ AI   T L+SVM VNNEIGV+QP++EIGQIC+E  + FH+D AQ  
Sbjct: 131 IKPNGIIDLETLKNAITDQTMLVSVMVVNNEIGVVQPLKEIGQICREKGVFFHSDIAQGF 190

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP+DV  +N+ L S+SGHKIYGPKG+GALY+R++PR+RV PLINGGGQERGIRSGTLP
Sbjct: 191 GKIPIDVNAFNIDLASISGHKIYGPKGIGALYVRKKPRVRVTPLINGGGQERGIRSGTLP 250

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
           TPLIVG G A EIA  EM+ D K I  L DR LN I +++  V +NG   +RY GNLNLS
Sbjct: 251 TPLIVGLGMAAEIAYSEMEKDTKHINYLFDRFLNNIHKRISKVYLNGDKNQRYKGNLNLS 310

Query: 358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           FA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHT+IRFGIGRFTTE 
Sbjct: 311 FAGVEGESMILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTAIRFGIGRFTTEQ 370

Query: 418 EVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           EVD A+ L   +++KLRE+SPL+EM++EGID+K+I+WA H
Sbjct: 371 EVDYAVNLICSKIDKLRELSPLWEMMQEGIDLKKIKWAVH 410

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Rickettsia africae (strain ESF-5) (taxid: 347255)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|A8EYH9|ISCS_RICCK Cysteine desulfurase OS=Rickettsia canadensis (strain McKiel) GN=iscS PE=3 SV=1

 Score =  578 bits (1491), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 258/400 (64%), Positives = 340/400 (85%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           P+Y+D QATTP+DPRV++AMLP++ +++GNPHSR+H FGWE+E AVE ARS++A LIGA 
Sbjct: 11  PIYMDYQATTPLDPRVMEAMLPYFTTKFGNPHSRSHSFGWEAENAVEEARSRVAKLIGAD 70

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
            KEIIFTSGATESNN++IKG+  FY +KK H+IT  +EHKCVLD+CRHL+QEG +ITYLP
Sbjct: 71  AKEIIFTSGATESNNLAIKGIAKFYGNKKNHIITVVSEHKCVLDACRHLEQEGIKITYLP 130

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           +  +GI++L+ L+ +I   T L+SVMAVNNEIGVIQP++EIG+IC+E  +  H+D AQ  
Sbjct: 131 INPNGIIDLEILKESITNQTMLVSVMAVNNEIGVIQPLKEIGKICRERGVFLHSDIAQGF 190

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP++V ++N+ L S+SGHKIYGPKGVGALY+R++PRIRV PLINGGGQERG+RSGTLP
Sbjct: 191 GKIPINVNEFNIDLASISGHKIYGPKGVGALYVRKKPRIRVTPLINGGGQERGMRSGTLP 250

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
           TPLIVG G A EIA  EM+ D+K ++ L DR LN IK+K+  V +NG  ++RY GNLNLS
Sbjct: 251 TPLIVGLGMAAEIAYNEMEKDNKHVSYLFDRFLNNIKQKISEVYLNGDKDQRYKGNLNLS 310

Query: 358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           FA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHTSIRFGIG+FTTE 
Sbjct: 311 FAGVEGESIILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTSIRFGIGKFTTEQ 370

Query: 418 EVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           E+D A++L   +++KLRE+SPL+EM+++GID+K+I+WA H
Sbjct: 371 EIDYAVDLICSKIDKLRELSPLWEMMQQGIDLKKIKWASH 410

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Rickettsia canadensis (strain McKiel) (taxid: 293613)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|Q92HP1|ISCS_RICCN Cysteine desulfurase OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=iscS PE=3 SV=1

 Score =  577 bits (1486), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 257/400 (64%), Positives = 333/400 (83%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           P+Y+D QATTP+DPRV++AMLP++ +++GNPHSR+H FGWE+E AVE ARS +A LIGA 
Sbjct: 11  PIYMDYQATTPIDPRVMEAMLPYFTTKFGNPHSRSHSFGWEAENAVEEARSMVAKLIGAD 70

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
            KEIIFTSGATESNN++IKG+  FY +KK H+IT  +EHKCVLD+CRHL+QEG +ITYLP
Sbjct: 71  TKEIIFTSGATESNNLAIKGIAKFYSNKKNHIITVVSEHKCVLDACRHLEQEGIKITYLP 130

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           +  +GI++L+ L+ AI   T L+SVM VNNEIGV+QP++EIG+IC+E  + FH+D AQ  
Sbjct: 131 IKPNGIIDLETLKNAITDQTMLVSVMVVNNEIGVVQPLKEIGKICREKGVFFHSDIAQGF 190

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP+DV  +N+ L S+SGHKIYGPKG+GALY+R++PR+RV PLINGGGQERG+RSGTLP
Sbjct: 191 GKIPIDVNAFNIDLASISGHKIYGPKGIGALYVRKKPRVRVTPLINGGGQERGMRSGTLP 250

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
           TPLIVG G A EIA  EM+ D K +  L DR LN I +++  V +NG   +RY GNLNLS
Sbjct: 251 TPLIVGLGMAAEIAYSEMEKDTKHVNYLFDRFLNNIHKRISEVYLNGDKNQRYKGNLNLS 310

Query: 358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           FA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHT+IRFGIGRFTTE 
Sbjct: 311 FAGVEGESMILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTAIRFGIGRFTTEQ 370

Query: 418 EVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           EVD A+ L   +++KLRE+SPL+EM++EGID+K+I+WA H
Sbjct: 371 EVDYAVNLICSKIDKLRELSPLWEMMQEGIDLKKIKWAVH 410

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Rickettsia conorii (strain ATCC VR-613 / Malish 7) (taxid: 272944)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

>sp|A8F204|ISCS_RICM5 Cysteine desulfurase OS=Rickettsia massiliae (strain Mtu5) GN=iscS PE=3 SV=1

 Score =  575 bits (1483), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 256/400 (64%), Positives = 334/400 (83%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           P+Y+D QATTP+DPRV++AMLP++ +++GNPHSR+H FGWE+E AVE ARS +A LIGA 
Sbjct: 11  PIYMDYQATTPIDPRVMEAMLPYFTTKFGNPHSRSHSFGWEAENAVEEARSMVAKLIGAD 70

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
            KEIIFTSGATESNN++IKG+  FY +KK H+IT  +EHKCVLD+CRHL+QEG +ITYLP
Sbjct: 71  TKEIIFTSGATESNNLAIKGIAKFYSNKKNHIITVVSEHKCVLDACRHLEQEGIKITYLP 130

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           +  +GI++L+ L+ AI   T L+SVM VNNEIGV+QP++EIG+IC+E  + FH+D AQ  
Sbjct: 131 IKPNGIIDLETLKNAITDQTMLVSVMVVNNEIGVVQPLKEIGKICREKGVFFHSDIAQGF 190

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP+DV ++N+ L S+SGHKIYGPKG+GALY+R++PR+RV PLINGGGQERG+RSGTLP
Sbjct: 191 GKIPIDVNEFNIDLASISGHKIYGPKGIGALYVRKKPRVRVTPLINGGGQERGMRSGTLP 250

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
           TPLIVG G A EIA  EM+ D K +  L DR LN I +++  V +NG   +RY GN+NLS
Sbjct: 251 TPLIVGLGMAAEIAYSEMEKDTKHVNYLFDRFLNNIHKRISEVYLNGDKNQRYKGNVNLS 310

Query: 358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           FA VEGES+++ +K++AVSSGSACTSASLEPSYVLR++G+ E++AHT+IRFGIGRFTTE 
Sbjct: 311 FAGVEGESIILAIKDLAVSSGSACTSASLEPSYVLRSMGIGEELAHTAIRFGIGRFTTEQ 370

Query: 418 EVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           EVD A+ L   +++KLRE+SPL+EM++EGID+K+I+WA H
Sbjct: 371 EVDYAVNLICSKIDKLRELSPLWEMMQEGIDLKKIKWAVH 410

Catalyzes the removal of elemental sulfur from cysteine to produce alanine.

Rickettsia massiliae (strain Mtu5) (taxid: 416276)

EC: 2

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
356541537	457	PREDICTED: cysteine desulfurase 1, mitoc	1.0	1.0	0.824	0.0
356497029	457	PREDICTED: cysteine desulfurase 1, mitoc	0.989	0.989	0.824	0.0
449451337	458	PREDICTED: cysteine desulfurase 1, mitoc	1.0	0.997	0.831	0.0
224095228	452	predicted protein [Populus trichocarpa]	0.982	0.993	0.828	0.0
359495657	454	PREDICTED: cysteine desulfurase 1, mitoc	0.993	1.0	0.816	0.0
255582401	453	cysteine desulfurylase, putative [Ricinu	0.991	1.0	0.827	0.0
225455976	451	PREDICTED: cysteine desulfurase 1, mitoc	0.984	0.997	0.821	0.0
357482461	454	Cysteine desulfurase [Medicago truncatul	0.993	1.0	0.800	0.0
388506606	454	unknown [Medicago truncatula]	0.993	1.0	0.794	0.0
147766517	415	hypothetical protein VITISV_036314 [Viti	0.903	0.995	0.827	0.0

>gi|356541537|ref|XP_003539231.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like [Glycine max]

 Score =  811 bits (2095), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/457 (82%), Positives = 423/457 (92%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLY 60
           M SKLIAS LR  +TK+A+    + LS A A AV        + +G+T+KGVRI+GRPLY
Sbjct: 1   MTSKLIASNLRHQITKSAQNLRRQLLSTAAAVAVPEHDGNNSNSSGMTMKGVRISGRPLY 60

Query: 61  LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE 120
           LD+QAT+PVDPRVLDAMLPFYLSRYGNPHSRTH +GWES+ AVE AR+Q+A LIGASPKE
Sbjct: 61  LDVQATSPVDPRVLDAMLPFYLSRYGNPHSRTHFYGWESDEAVEHARAQVASLIGASPKE 120

Query: 121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180
           I+FTSGATESNN+S+KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF++TYLPV +
Sbjct: 121 IVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVES 180

Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
           DG+++LDELRA+IRPDTGL+SVMAVNNEIGV+QPMEEIG+ICKEF +PFHTDAAQALGKI
Sbjct: 181 DGLIDLDELRASIRPDTGLVSVMAVNNEIGVVQPMEEIGRICKEFNVPFHTDAAQALGKI 240

Query: 241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPL 300
           P+DVE+WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGT+PTPL
Sbjct: 241 PIDVERWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPL 300

Query: 301 IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360
           +VG G+ACE+AK EM+YD KRI+AL  RLLNGI+EKLDGVVVNGS+ERRY+GNLNLSFAY
Sbjct: 301 VVGMGAACEVAKDEMEYDEKRISALQQRLLNGIREKLDGVVVNGSLERRYVGNLNLSFAY 360

Query: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV+EDMAHTSIRFGIGRFTTEAE+D
Sbjct: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEID 420

Query: 421 RAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           RA+ELTV+QVEKLREMSPLYEMVKEGI+IK IQWAQH
Sbjct: 421 RAVELTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497029|ref|XP_003517367.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like isoform 1 [Glycine max] gi|356497031|ref|XP_003517368.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like isoform 2 [Glycine max]

 Score =  811 bits (2094), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/462 (82%), Positives = 425/462 (91%), Gaps = 10/462 (2%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQN-----GITLKGVRIA 55
           M SKLIAS LR  +TK+A+    + LS A AAAV     P+ D N     G+T+KGVRI+
Sbjct: 1   MTSKLIASNLRHQITKSAQNLRRQLLSTAAAAAV-----PEHDGNNSNSLGMTMKGVRIS 55

Query: 56  GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
           GRPLYLD+QAT+PVDPRVLDAMLPFY+SRYGNPHSRTH +GWES+ AVE AR+Q+A LIG
Sbjct: 56  GRPLYLDVQATSPVDPRVLDAMLPFYISRYGNPHSRTHFYGWESDEAVEHARAQVASLIG 115

Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
           ASPKEI+FTSGATESNN+S+KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF++TY
Sbjct: 116 ASPKEIVFTSGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTY 175

Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           LPV +DG+++LD+LRAAIRPDTGL+SVMAVNNEIGV+QPME IG+ICKEF +PFHTDAAQ
Sbjct: 176 LPVESDGLIDLDKLRAAIRPDTGLVSVMAVNNEIGVVQPMERIGRICKEFNVPFHTDAAQ 235

Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
           ALGKIP+DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGT
Sbjct: 236 ALGKIPIDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGT 295

Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
           +PTPL+VG GSACE+AK EM+YD KRI+AL  RLLNGI+EKLDGVVVNGS+ERRY+GNLN
Sbjct: 296 VPTPLVVGMGSACEVAKNEMEYDEKRISALQQRLLNGIREKLDGVVVNGSLERRYVGNLN 355

Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV+EDMAHTSIRFGIGRFTT
Sbjct: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTT 415

Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           EAE+DRA+ELTV+QVEKLREMSPLYEMVKEGI+IK IQWAQH
Sbjct: 416 EAEIDRAVELTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH 457

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451337|ref|XP_004143418.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like isoform 1 [Cucumis sativus] gi|449451339|ref|XP_004143419.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like isoform 2 [Cucumis sativus] gi|449525720|ref|XP_004169864.1| PREDICTED: LOW QUALITY PROTEIN: cysteine desulfurase 1, mitochondrial-like [Cucumis sativus]

 Score =  810 bits (2093), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/458 (83%), Positives = 430/458 (93%), Gaps = 1/458 (0%)

Query: 1   MASKLIASTLRKTLTKAAK-TAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPL 59
           MASK++ASTLR+TL+ ++   +  R +S A AA  ++  EP ED+ GI++KGV+I+GRPL
Sbjct: 1   MASKILASTLRRTLSNSSSPISRFRPISTAAAAVAASPSEPHEDETGISMKGVKISGRPL 60

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLDMQAT+PVDPRVLDAMLP+Y+SRYGNPHSRTHL+GWES+ AVETARSQ+A LIGASPK
Sbjct: 61  YLDMQATSPVDPRVLDAMLPYYISRYGNPHSRTHLYGWESDHAVETARSQVAALIGASPK 120

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           EI+FTSGATESNN+SIKGVMHFY+DKKRH+ITTQTEHKCVLDSCRHLQQEGFEITYLPVG
Sbjct: 121 EIVFTSGATESNNISIKGVMHFYRDKKRHLITTQTEHKCVLDSCRHLQQEGFEITYLPVG 180

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
           +DGIV+L++LR+AIRPDTGL+SVMAVNNEIGVIQP+EEIG+ICKEF +PFHTDAAQALGK
Sbjct: 181 SDGIVDLEKLRSAIRPDTGLVSVMAVNNEIGVIQPVEEIGKICKEFNVPFHTDAAQALGK 240

Query: 240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
           IP+DVEKWNVSLMSLSGHKIYGPKG+GALYMRRRPRIRVEP +NGGGQERGIRSGT+PTP
Sbjct: 241 IPIDVEKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTP 300

Query: 300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
           L+VG G+ACE+A KEM+YD KRITAL +RLLNGI  KL+GVVVNGSME RY GNLNLSFA
Sbjct: 301 LVVGMGAACELAMKEMEYDDKRITALQERLLNGINAKLEGVVVNGSMENRYPGNLNLSFA 360

Query: 360 YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419
           YVEGESLLMGLK+VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE+
Sbjct: 361 YVEGESLLMGLKDVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEI 420

Query: 420 DRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           DRA+ELTV QVEKLREMSPLYEMVKEGI+IK+IQWAQH
Sbjct: 421 DRAVELTVHQVEKLREMSPLYEMVKEGINIKEIQWAQH 458

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095228|ref|XP_002310363.1| predicted protein [Populus trichocarpa] gi|222853266|gb|EEE90813.1| predicted protein [Populus trichocarpa]

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/455 (82%), Positives = 424/455 (93%), Gaps = 6/455 (1%)

Query: 3   SKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLD 62
           SKL+ASTLR+TLT    ++  R  S A A AV+ A EP+   + +T+KGV+I+ RPLYLD
Sbjct: 4   SKLLASTLRRTLTT---SSSFRRFSTAAAEAVALASEPE---DSMTIKGVKISSRPLYLD 57

Query: 63  MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEII 122
           MQAT+PVDPRVLDAMLP+YL+RYGNPHSRTHL+GWES+ AVETARSQIADLIGASPKEI+
Sbjct: 58  MQATSPVDPRVLDAMLPYYLARYGNPHSRTHLYGWESDQAVETARSQIADLIGASPKEIV 117

Query: 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG 182
           FTSGATESNN+S+KGV+ FYK+KKRHV+TTQTEHKCVLDSCRHLQQEGFE+TYLPVG DG
Sbjct: 118 FTSGATESNNISVKGVIKFYKEKKRHVVTTQTEHKCVLDSCRHLQQEGFEVTYLPVGNDG 177

Query: 183 IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV 242
           IV+L++L+ +IRPDTGL+SVMAVNNEIGVIQPMEEIG+ICKE  +PFHTDAAQALGKIP+
Sbjct: 178 IVDLEKLKGSIRPDTGLVSVMAVNNEIGVIQPMEEIGEICKELNVPFHTDAAQALGKIPI 237

Query: 243 DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIV 302
           DV+KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGT+PTPL+V
Sbjct: 238 DVDKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVV 297

Query: 303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE 362
           G G+ACE+AKKEM+YD KRI ALH+R+LNG++ KLDGVVVNGS+ERRY GNLNLSFAYVE
Sbjct: 298 GMGAACELAKKEMEYDDKRIRALHERMLNGVRAKLDGVVVNGSVERRYAGNLNLSFAYVE 357

Query: 363 GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA 422
           GESLLMGLK+VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE E+DRA
Sbjct: 358 GESLLMGLKDVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEEEIDRA 417

Query: 423 IELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           IELTV+QVEKLREMSPLYEMVKEGIDIKQIQWAQH
Sbjct: 418 IELTVQQVEKLREMSPLYEMVKEGIDIKQIQWAQH 452

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495657|ref|XP_003635049.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like [Vitis vinifera]

 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/457 (81%), Positives = 419/457 (91%), Gaps = 3/457 (0%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLY 60
           MAS+L +S L +TL   +    +R LS ATAAA   +YE   D +GI++KGV+I+GRPLY
Sbjct: 1   MASRLHSSRLFQTLKTTSPICRLRHLSTATAAAAKESYE---DADGISMKGVKISGRPLY 57

Query: 61  LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE 120
           LDMQAT+PVDPRVLDAMLP+YLS +GNPHSRTHL+GWES++AVE AR+Q+A LI ASPKE
Sbjct: 58  LDMQATSPVDPRVLDAMLPYYLSSFGNPHSRTHLYGWESDLAVEKARAQVAALINASPKE 117

Query: 121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180
           I+FTSGATESNN+S+KGVMHFYK+KKRHVITTQTEHKCVLDSCRHLQQEGFE+TYLPVG+
Sbjct: 118 IVFTSGATESNNISVKGVMHFYKEKKRHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVGS 177

Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
           DGIV++D++R+AIRPDTGL+SVM VNNEIGVIQP+EEIG IC+E  +PFHTDAAQALGKI
Sbjct: 178 DGIVDIDQMRSAIRPDTGLVSVMTVNNEIGVIQPIEEIGNICRELGVPFHTDAAQALGKI 237

Query: 241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPL 300
           PVDVEK NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGT+PTPL
Sbjct: 238 PVDVEKMNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPL 297

Query: 301 IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360
           +VG G+ACE+A KEM+YD KRI+ L +RLLNGIK KLDGVVVNGS E+RY GNLNLSFAY
Sbjct: 298 VVGMGAACELAMKEMEYDDKRISDLQERLLNGIKAKLDGVVVNGSKEKRYAGNLNLSFAY 357

Query: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE+D
Sbjct: 358 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEID 417

Query: 421 RAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           RA+ELTV+QVEKLREMSPLYEMVKEGIDIK IQWAQH
Sbjct: 418 RAVELTVQQVEKLREMSPLYEMVKEGIDIKSIQWAQH 454

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582401|ref|XP_002531989.1| cysteine desulfurylase, putative [Ricinus communis] gi|223528348|gb|EEF30388.1| cysteine desulfurylase, putative [Ricinus communis]

 Score =  791 bits (2044), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/457 (82%), Positives = 424/457 (92%), Gaps = 4/457 (0%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLY 60
           MASKL+AST+R+ ++K   T   R LS + AAA +    P +++  +T+KG++I+ RPLY
Sbjct: 1   MASKLLASTVRRAISK---TTSSRHLSTSAAAAATVT-SPYDNEEIVTVKGLKISARPLY 56

Query: 61  LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE 120
           LDMQAT+PVDPRVLDAMLP+YL+RYGNPHSRTHL+GWES+ AVETARSQ+ADLIGASPKE
Sbjct: 57  LDMQATSPVDPRVLDAMLPYYLARYGNPHSRTHLYGWESDSAVETARSQVADLIGASPKE 116

Query: 121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180
           I+FTSGATESNN+SIKGVM FYK+KKRHVITTQTEHKCVLDSCR+LQQEGFE+TYLPV  
Sbjct: 117 IVFTSGATESNNISIKGVMKFYKEKKRHVITTQTEHKCVLDSCRYLQQEGFEVTYLPVKN 176

Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
           DGIV+L++LR AIR DTGL+SVMAVNNEIGVIQPMEEIG+ICKEFK+PFHTDAAQALGKI
Sbjct: 177 DGIVDLEKLRNAIRADTGLVSVMAVNNEIGVIQPMEEIGKICKEFKVPFHTDAAQALGKI 236

Query: 241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPL 300
           P+DV+KWNVSLMSLSGHKIYGPKG+GALYMRRRPRIRVEP +NGGGQERGIRSGT+PTPL
Sbjct: 237 PIDVDKWNVSLMSLSGHKIYGPKGIGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPL 296

Query: 301 IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360
           +VG G+ACE+AKKEM YD KRI  L +RLLNGIKEKLDGVVVNGS+ERRY GNLN+SFAY
Sbjct: 297 VVGMGAACELAKKEMGYDDKRIRDLQERLLNGIKEKLDGVVVNGSVERRYAGNLNISFAY 356

Query: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           VEGESLLMGLK+VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE+D
Sbjct: 357 VEGESLLMGLKDVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEID 416

Query: 421 RAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           RAIELTV+QVEKLREMSPLYEMVKEGIDIKQIQWAQH
Sbjct: 417 RAIELTVQQVEKLREMSPLYEMVKEGIDIKQIQWAQH 453

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455976|ref|XP_002276621.1| PREDICTED: cysteine desulfurase 1, mitochondrial-like [Vitis vinifera]

 Score =  786 bits (2029), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/453 (82%), Positives = 416/453 (91%), Gaps = 3/453 (0%)

Query: 6   IASTLRKTLTKAAKTAGVRS-LSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLYLDMQ 64
           +AS L +TL   + T  + S LS ATAA    A E  ED +GI++KGV+I+GRPLYLD+Q
Sbjct: 1   MASRLLQTLKTTSPTCRLLSHLSTATAAV--AAKESYEDADGISMKGVKISGRPLYLDVQ 58

Query: 65  ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFT 124
           AT+PVDPRVLDAMLP+YLS +GNPHSRTHL+GWESE+AVE AR+Q+A LI ASPKEI+FT
Sbjct: 59  ATSPVDPRVLDAMLPYYLSSFGNPHSRTHLYGWESELAVEKARAQVAALINASPKEIVFT 118

Query: 125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIV 184
           SGATESNN+S+KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE+TYLPVG+DGIV
Sbjct: 119 SGATESNNISVKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVGSDGIV 178

Query: 185 NLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDV 244
           ++D++R+AIRPDTGL+SVMAVNNEIGVIQP+EEIG++CKE  +PFHTDAAQALGKIP+DV
Sbjct: 179 DIDQIRSAIRPDTGLVSVMAVNNEIGVIQPIEEIGKMCKELGVPFHTDAAQALGKIPIDV 238

Query: 245 EKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGF 304
           EK NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGT+PTPL+VG 
Sbjct: 239 EKMNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTVPTPLVVGM 298

Query: 305 GSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE 364
           G+ACE+A KEM+YD +RITAL  RLLNGI  KLDGVVVNGS ERRY GNLNLSFAYVEGE
Sbjct: 299 GAACELAMKEMEYDDERITALQKRLLNGINAKLDGVVVNGSRERRYAGNLNLSFAYVEGE 358

Query: 365 SLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
           SLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT+AE+DRA+E
Sbjct: 359 SLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTDAEIDRAVE 418

Query: 425 LTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           LTV+QVEKLREMSPLYEMVKEGIDIK IQWAQH
Sbjct: 419 LTVQQVEKLREMSPLYEMVKEGIDIKSIQWAQH 451

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357482461|ref|XP_003611517.1| Cysteine desulfurase [Medicago truncatula] gi|355512852|gb|AES94475.1| Cysteine desulfurase [Medicago truncatula]

 Score =  780 bits (2013), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/457 (80%), Positives = 416/457 (91%), Gaps = 3/457 (0%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLY 60
           M SKL AS LR  LTK      +R    +TAAA +     +E   GIT+KGV+I+GRPLY
Sbjct: 1   MTSKLFASLLRNHLTKKPH---LRRHPFSTAAAAALTEPHEETTAGITMKGVKISGRPLY 57

Query: 61  LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE 120
           LD+QAT+PVDPRVLDAMLPFYLSRYGNPHSRTH +GWES+ A+E ARSQ+A LI ASPKE
Sbjct: 58  LDVQATSPVDPRVLDAMLPFYLSRYGNPHSRTHFYGWESDDAIEHARSQVAALISASPKE 117

Query: 121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180
           I+FTSGATESNN+SIKGV+HFYK+KK+HVITTQTEHKCVLDSCRHLQQEGF++TYLPV +
Sbjct: 118 IVFTSGATESNNISIKGVLHFYKEKKKHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVES 177

Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
           DG+V+L++LR+AIRPDTGL+SVMAVNNEIGV+QPMEEIG+ICKEF + FHTDAAQALGKI
Sbjct: 178 DGLVDLEKLRSAIRPDTGLVSVMAVNNEIGVVQPMEEIGKICKEFGVAFHTDAAQALGKI 237

Query: 241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPL 300
           PVDV+KWNVSLMSLSGHK+YGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGTLPTPL
Sbjct: 238 PVDVDKWNVSLMSLSGHKVYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTLPTPL 297

Query: 301 IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360
           +VG G+ACE+A KEM+YD KRI+AL  RLLNGI++KLDGVVVNGSMERRY+GNLNLSFAY
Sbjct: 298 VVGMGAACEVALKEMEYDEKRISALQQRLLNGIRDKLDGVVVNGSMERRYVGNLNLSFAY 357

Query: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV+EDMAHTSIRFGIGRFTTE E+D
Sbjct: 358 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEEEID 417

Query: 421 RAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           RA++LTV+QVEKLR+MSPLYEM+KEGI+IK I+W QH
Sbjct: 418 RAVQLTVQQVEKLRDMSPLYEMMKEGINIKDIKWDQH 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506606|gb|AFK41369.1| unknown [Medicago truncatula]

 Score =  773 bits (1995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/457 (79%), Positives = 413/457 (90%), Gaps = 3/457 (0%)

Query: 1   MASKLIASTLRKTLTKAAKTAGVRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPLY 60
           M SKL AS LR  LTK      +R    +TAAA +     +E   GIT+KGV+I+GRPLY
Sbjct: 1   MTSKLFASLLRNHLTKKPH---LRRHPFSTAAAAALTEPHEETTAGITMKGVKISGRPLY 57

Query: 61  LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE 120
           LD+QAT+PVDPRVLDAMLPFYLSRYGNPHSRTH +GWES+ A+E ARSQ+A LI ASPKE
Sbjct: 58  LDVQATSPVDPRVLDAMLPFYLSRYGNPHSRTHFYGWESDDAIEHARSQVAALISASPKE 117

Query: 121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA 180
           I+FTSGATESNN+SIKGV+HFYK+KK+HVITTQTEHKCVLDSCRHLQQEGF++TYLPV +
Sbjct: 118 IVFTSGATESNNISIKGVLHFYKEKKKHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVES 177

Query: 181 DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI 240
           DG+V+L++LR+AIRPDTGL SVMAVNNEIGV+QPMEEIG+ICKEF + FHTDAAQALGKI
Sbjct: 178 DGLVDLEKLRSAIRPDTGLASVMAVNNEIGVVQPMEEIGKICKEFGVAFHTDAAQALGKI 237

Query: 241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPL 300
           PVDV+KWNVSLMSLSGHK+YGPKGVGALYMRRRPRIRVEP +NGGGQERGIRSGTLPTPL
Sbjct: 238 PVDVDKWNVSLMSLSGHKVYGPKGVGALYMRRRPRIRVEPQMNGGGQERGIRSGTLPTPL 297

Query: 301 IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY 360
           +VG G+ACE+A KEM++D KRI+AL  RLLNGI++KLDGVVVNGSMERRY+GNLNLSFAY
Sbjct: 298 VVGMGAACEVASKEMEHDEKRISALQQRLLNGIRDKLDGVVVNGSMERRYVGNLNLSFAY 357

Query: 361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV+EDMAHTSIRFGIGRFT E E+D
Sbjct: 358 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTAEEEID 417

Query: 421 RAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           RA++L V+QVEKLR+MSPLYEM+KEGI+IK I+W QH
Sbjct: 418 RAVQLAVQQVEKLRDMSPLYEMMKEGINIKDIKWDQH 454

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766517|emb|CAN65403.1| hypothetical protein VITISV_036314 [Vitis vinifera]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/423 (82%), Positives = 389/423 (91%), Gaps = 10/423 (2%)

Query: 35  STAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHL 94
           + A E  ED +GI++KGV+I+GRPLYLDMQAT+PVDPRVLDAMLP+YLS +GNPHSRTHL
Sbjct: 3   AAAKESYEDADGISMKGVKISGRPLYLDMQATSPVDPRVLDAMLPYYLSSFGNPHSRTHL 62

Query: 95  FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQT 154
           +GWES++AVE AR+Q          EI+FTSGATESNN+S+KGVMHFYK+KKRHVITTQT
Sbjct: 63  YGWESDLAVEKARAQ----------EIVFTSGATESNNISVKGVMHFYKEKKRHVITTQT 112

Query: 155 EHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP 214
           EHKCVLDSCRHLQQEGFE+TYLPVG+DGIV++D +R+AIRPDTGL+SVM VNNEIGVIQP
Sbjct: 113 EHKCVLDSCRHLQQEGFEVTYLPVGSDGIVDIDLMRSAIRPDTGLVSVMTVNNEIGVIQP 172

Query: 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRP 274
           +EEIG IC+E  +PFHTDAAQALGKIPVDVEK NVSLMSLSGHKIYGPKGVGALYMRRRP
Sbjct: 173 IEEIGNICRELGVPFHTDAAQALGKIPVDVEKMNVSLMSLSGHKIYGPKGVGALYMRRRP 232

Query: 275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK 334
           RIRVEP +NGGGQERGIRSGT+PTPL+VG G+ACE+A KEM+YD KRI+ L +RLLNG K
Sbjct: 233 RIRVEPQMNGGGQERGIRSGTVPTPLVVGMGAACELAMKEMEYDDKRISXLQERLLNGXK 292

Query: 335 EKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRA 394
            KLDGVVVNGS E+RY GNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRA
Sbjct: 293 AKLDGVVVNGSKEKRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRA 352

Query: 395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQW 454
           LGVDEDMAHTSIRFGIGRFTTEAE+DRA+ELTV+QVEKLREMSPLYEMVKEGIDIK IQW
Sbjct: 353 LGVDEDMAHTSIRFGIGRFTTEAEIDRAVELTVQQVEKLREMSPLYEMVKEGIDIKSIQW 412

Query: 455 AQH 457
           AQH
Sbjct: 413 AQH 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	457
TAIR|locus:2169985	453	NFS1 "nitrogen fixation S (NIF	0.989	0.997	0.764	1e-187
UNIPROTKB|A5PKG4	457	NFS1 "Uncharacterized protein"	0.877	0.877	0.700	7e-157
UNIPROTKB|B6UV57	457	LOC100739236 "Nitrogen fixatio	0.877	0.877	0.700	1.1e-156
UNIPROTKB|Q9Y697	457	NFS1 "Cysteine desulfurase, mi	0.877	0.877	0.695	1.4e-156
UNIPROTKB|F1PAY2	457	NFS1 "Uncharacterized protein"	0.877	0.877	0.700	1.8e-156
UNIPROTKB|Q3MHT2	459	Nfs1 "Cysteine desulfurase, mi	0.877	0.873	0.690	2.1e-155
ZFIN|ZDB-GENE-060405-1	451	nfs1 "NFS1 nitrogen fixation 1	0.877	0.889	0.693	2.7e-155
RGD|620912	451	Nfs1 "NFS1 nitrogen fixation 1	0.877	0.889	0.688	5.6e-155
MGI|MGI:1316706	451	Nfs1 "nitrogen fixation gene 1	0.877	0.889	0.688	5.1e-154
FB|FBgn0032393	462	CG12264 [Drosophila melanogast	0.943	0.932	0.655	7.4e-153

TAIR|locus:2169985 NFS1 "nitrogen fixation S (NIFS)-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1820 (645.7 bits), Expect = 1.0e-187, P = 1.0e-187
 Identities = 350/458 (76%), Positives = 399/458 (87%)

Query:     1 MASKLIASTLRXXXXXXXXXXG-VRSLSNATAAAVSTAYEPQEDQNGITLKGVRIAGRPL 59
             MASK+I++T+R             R LS A AAA    YE   D++ I +KGVRI+GRPL
Sbjct:     1 MASKVISATIRRTLTKPHGTFSRCRYLSTA-AAATEVNYE---DES-IMMKGVRISGRPL 55

Query:    60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
             YLDMQATTP+DPRV DAM    +  YGNPHSRTHL+GWE+E AVE AR+Q+A LI ASPK
Sbjct:    56 YLDMQATTPIDPRVFDAMNASQIHEYGNPHSRTHLYGWEAENAVENARNQVAKLIEASPK 115

Query:   120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
             EI+F SGATE+NN+++KGVMHFYKD K+HVITTQTEHKCVLDSCRHLQQEGFE+TYLPV 
Sbjct:   116 EIVFVSGATEANNMAVKGVMHFYKDTKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVK 175

Query:   180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
              DG+V+L+ LR AIRPDTGL+S+MAVNNEIGV+QPMEEIG ICKE  +PFHTDAAQA+GK
Sbjct:   176 TDGLVDLEMLREAIRPDTGLVSIMAVNNEIGVVQPMEEIGMICKEHNVPFHTDAAQAIGK 235

Query:   240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
             IPVDV+KWNV+LMS+S HKIYGPKGVGALY+RRRPRIR+EPL+NGGGQERG+RSGT  T 
Sbjct:   236 IPVDVKKWNVALMSMSAHKIYGPKGVGALYVRRRPRIRLEPLMNGGGQERGLRSGTGATQ 295

Query:   300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
              IVGFG+ACE+A KEM+YD K I  L +RLLNG++EKLDGVVVNGSM+ RY+GNLNLSFA
Sbjct:   296 QIVGFGAACELAMKEMEYDEKWIKGLQERLLNGVREKLDGVVVNGSMDSRYVGNLNLSFA 355

Query:   360 YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV 419
             YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT+ E+
Sbjct:   356 YVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTKEEI 415

Query:   420 DRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
             D+A+ELTVKQVEKLREMSPLYEMVKEGIDIK IQW+QH
Sbjct:   416 DKAVELTVKQVEKLREMSPLYEMVKEGIDIKNIQWSQH 453

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008483 "transaminase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A5PKG4 NFS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 1529 (543.3 bits), Expect = 7.0e-157, P = 7.0e-157
 Identities = 281/401 (70%), Positives = 343/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    57 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMECARQQVASLIGA 116

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct:   117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFKVTYL 176

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP++EIGQIC   K+ FHTDAAQA
Sbjct:   177 PVKKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIKEIGQICSSRKVYFHTDAAQA 236

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  E  Y G +NL
Sbjct:   297 PTPLVVGLGAACEVAQQEMEYDHKRISKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINL 356

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 416

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  +E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   417 EEVDYTVEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|B6UV57 LOC100739236 "Nitrogen fixation 1-like protein" [Sus scrofa (taxid:9823)]

 Score = 1527 (542.6 bits), Expect = 1.1e-156, P = 1.1e-156
 Identities = 281/401 (70%), Positives = 342/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    57 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGA 116

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct:   117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYL 176

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAIRPDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA
Sbjct:   177 PVKKSGIIDLKELEAAIRPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQA 236

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  E  Y G +NL
Sbjct:   297 PTPLVVGLGAACEVAQQEMEYDHKRISKLAERLIQKIMKSLPDVVMNGDPEHHYPGCINL 356

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 416

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  +E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   417 EEVDYTVEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|Q9Y697 NFS1 "Cysteine desulfurase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 1526 (542.2 bits), Expect = 1.4e-156, P = 1.4e-156
 Identities = 279/401 (69%), Positives = 343/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    57 RPLYMDVQATTPLDPRVLDAMLPYLINYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 116

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct:   117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYL 176

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIG+IC   K+ FHTDAAQA
Sbjct:   177 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGRICSSRKVYFHTDAAQA 236

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  +  Y G +NL
Sbjct:   297 PTPLVVGLGAACEVAQQEMEYDHKRISKLSERLIQNIMKSLPDVVMNGDPKHHYPGCINL 356

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 416

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  +E  ++ V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   417 EEVDYTVEKCIQHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0031071 "cysteine desulfurase activity" evidence=IDA;TAS

GO:0005634 "nucleus" evidence=IDA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0006766 "vitamin metabolic process" evidence=TAS

GO:0006767 "water-soluble vitamin metabolic process" evidence=TAS

GO:0032324 "molybdopterin cofactor biosynthetic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|F1PAY2 NFS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
 Identities = 281/401 (70%), Positives = 341/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    57 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMEHARQQVASLIGA 116

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H+ITTQTEHKCVLDSCR L+ EGF++TYL
Sbjct:   117 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLITTQTEHKCVLDSCRSLEAEGFQVTYL 176

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL +AI+PDT L+SVM VNNEIGV QP+ EIGQIC   K+ FHTDAAQA
Sbjct:   177 PVKKSGIIDLKELESAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKVYFHTDAAQA 236

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHKIYGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   237 VGKIPLDVNDMKIDLMSISGHKIYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 296

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L DRL   I + L  VV+NG  E  Y G +NL
Sbjct:   297 PTPLVVGLGAACEVAQQEMEYDHKRISKLADRLTQKIMKSLPDVVMNGDPEHHYPGCINL 356

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   357 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 416

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  +E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   417 EEVDYTVEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 457

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

UNIPROTKB|Q3MHT2 Nfs1 "Cysteine desulfurase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 1515 (538.4 bits), Expect = 2.1e-155, P = 2.1e-155
 Identities = 277/401 (69%), Positives = 342/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    59 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 118

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYL
Sbjct:   119 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYL 178

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIGQIC   K+ FHTDAAQA
Sbjct:   179 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKLYFHTDAAQA 238

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHK+YGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   239 VGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 298

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NL
Sbjct:   299 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLIQKIMKNLPDVVMNGDPKQHYPGCINL 358

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   359 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 418

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  ++  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   419 EEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 459

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

ZFIN|ZDB-GENE-060405-1 nfs1 "NFS1 nitrogen fixation 1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 1514 (538.0 bits), Expect = 2.7e-155, P = 2.7e-155
 Identities = 278/401 (69%), Positives = 342/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    51 RPLYMDFQATTPMDPRVLDAMLPYQVNYYGNPHSRTHAYGWESESAMEKARKQVAGLIGA 110

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EI+FTSGATESNN+SIKGV  FYK KK H+ITTQ EHKCVLDSCR L+ EGF+ITYL
Sbjct:   111 DPREIVFTSGATESNNMSIKGVARFYKAKKMHIITTQIEHKCVLDSCRVLETEGFDITYL 170

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV ++G+++L +L   IRPDT L+S+MA+NNEIGV QP++EIG +C+   + FHTDAAQA
Sbjct:   171 PVKSNGLIDLKQLEDTIRPDTSLVSIMAINNEIGVKQPVKEIGHLCRSKNVFFHTDAAQA 230

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIPVDV  W V LMS+S HKIYGPKGVGAL++RRRPR+R+EPL +GGGQERG+RSGT+
Sbjct:   231 VGKIPVDVTDWKVDLMSISAHKIYGPKGVGALFVRRRPRVRLEPLQSGGGQERGLRSGTV 290

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL VG G+ACEIA++E++YDHKR++ L +RL+  I  ++  VV+NG  ++RY G +NL
Sbjct:   291 PTPLAVGLGAACEIAQQELEYDHKRVSLLANRLVQKIMSEIPDVVMNGDPDQRYPGCINL 350

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   351 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGADEDLAHSSIRFGIGRFTTE 410

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD   E  + QV++LREMSPL+EMV+EGID+K I+W QH
Sbjct:   411 EEVDYTAEKCIHQVKRLREMSPLWEMVQEGIDLKSIKWTQH 451

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

RGD|620912 Nfs1 "NFS1 nitrogen fixation 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 276/401 (68%), Positives = 342/401 (85%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D++ATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    51 RPLYMDVRATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 110

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYL
Sbjct:   111 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYL 170

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EIGQIC   K+ FHTDAAQA
Sbjct:   171 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIGQICSSRKLYFHTDAAQA 230

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHK+YGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   231 VGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 290

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NL
Sbjct:   291 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLIQKIMKNLPDVVMNGDPKQHYPGCINL 350

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYVLRA+G DED+AH+SIRFGIGRFTTE
Sbjct:   351 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVLRAIGTDEDLAHSSIRFGIGRFTTE 410

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD  ++  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   411 EEVDYTVQKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA;ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

MGI|MGI:1316706 Nfs1 "nitrogen fixation gene 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 1502 (533.8 bits), Expect = 5.1e-154, P = 5.1e-154
 Identities = 276/401 (68%), Positives = 339/401 (84%)

Query:    57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             RPLY+D+QATTP+DPRVLDAMLP+ ++ YGNPHSRTH +GWESE A+E AR Q+A LIGA
Sbjct:    51 RPLYMDVQATTPLDPRVLDAMLPYLVNYYGNPHSRTHAYGWESEAAMERARQQVASLIGA 110

Query:   117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL 176
              P+EIIFTSGATESNN++IKGV  FY+ +K+H++TTQTEHKCVLDSCR L+ EGF +TYL
Sbjct:   111 DPREIIFTSGATESNNIAIKGVARFYRSRKKHLVTTQTEHKCVLDSCRSLEAEGFRVTYL 170

Query:   177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             PV   GI++L EL AAI+PDT L+SVM VNNEIGV QP+ EI QIC   K+ FHTDAAQA
Sbjct:   171 PVQKSGIIDLKELEAAIQPDTSLVSVMTVNNEIGVKQPIAEIRQICSSRKVYFHTDAAQA 230

Query:   237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
             +GKIP+DV    + LMS+SGHK+YGPKGVGA+Y+RRRPR+RVE L +GGGQERG+RSGT+
Sbjct:   231 VGKIPLDVNDMKIDLMSISGHKLYGPKGVGAIYIRRRPRVRVEALQSGGGQERGMRSGTV 290

Query:   297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             PTPL+VG G+ACE+A++EM+YDHKRI+ L +RL+  I + L  VV+NG  ++ Y G +NL
Sbjct:   291 PTPLVVGLGAACELAQQEMEYDHKRISKLAERLVQKIMKNLPDVVMNGDPKQHYPGCINL 350

Query:   357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             SFAYVEGESLLM LK+VA+SSGSACTSASLEPSYV RA+G DED+AH+SIRFGIGRFTTE
Sbjct:   351 SFAYVEGESLLMALKDVALSSGSACTSASLEPSYVFRAIGTDEDLAHSSIRFGIGRFTTE 410

Query:   417 AEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
              EVD   E  +  V++LREMSPL+EMV++GID+K I+W QH
Sbjct:   411 EEVDYTAEKCIHHVKRLREMSPLWEMVQDGIDLKSIKWTQH 451

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0018283 "iron incorporation into metallo-sulfur cluster" evidence=ISO;IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

FB|FBgn0032393 CG12264 [Drosophila melanogaster (taxid:7227)]

 Score = 1491 (529.9 bits), Expect = 7.4e-153, P = 7.4e-153
 Identities = 283/432 (65%), Positives = 349/432 (80%)

Query:    27 SNATAAA-VSTAYEPQEDQNGITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRY 85
             S+ TAA   +T+ E +E Q    +K  +  GRPLYLD QATTP+DPRVLDAMLP+  + Y
Sbjct:    31 SSRTAAKPAATSKEFRERQVRFNIKNEQTEGRPLYLDAQATTPMDPRVLDAMLPYLTNFY 90

Query:    86 GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDK 145
             GNPHSRTH +GWE+E AVE AR Q+A LIGA PKEIIFTSGATESNN+++KGV  FY  K
Sbjct:    91 GNPHSRTHAYGWETESAVEKAREQVATLIGADPKEIIFTSGATESNNIAVKGVARFYGTK 150

Query:   146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAV 205
             KRHVITTQTEHKCVLDSCR L+ EGF++TYLPV A+G+++L +L   I  +T L+S+M V
Sbjct:   151 KRHVITTQTEHKCVLDSCRALENEGFKVTYLPVLANGLIDLQQLEETITSETSLVSIMTV 210

Query:   206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGV 265
             NNEIGV QP++EIG++C+  ++ FHTDAAQA+GK+P+DV   N+ LMS+SGHKIYGPKGV
Sbjct:   211 NNEIGVRQPVDEIGKLCRSRRVFFHTDAAQAVGKVPLDVNAMNIDLMSISGHKIYGPKGV 270

Query:   266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL 325
             GALY+RRRPR+R+EP+ +GGGQERG+RSGT+P PL VG G+A E++ +EMDYD K +  L
Sbjct:   271 GALYVRRRPRVRLEPIQSGGGQERGLRSGTVPAPLAVGLGAAAELSLREMDYDKKWVDFL 330

Query:   326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSAS 385
              +RLL+ I   L  V+ NG  +  Y G LNLSFAYVEGESLLM LK+VA+SSGSACTSAS
Sbjct:   331 SNRLLDRISSALPHVIRNGDAKATYNGCLNLSFAYVEGESLLMALKDVALSSGSACTSAS 390

Query:   386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKE 445
             LEPSYVLRA+G DED+AH+SIRFGIGRFTT  EVD   +  +K VE+LREMSPL+EMV+E
Sbjct:   391 LEPSYVLRAIGTDEDLAHSSIRFGIGRFTTVEEVDYTADKCIKHVERLREMSPLWEMVQE 450

Query:   446 GIDIKQIQWAQH 457
             GID+K IQW+QH
Sbjct:   451 GIDLKTIQWSQH 462

GO:0016226 "iron-sulfur cluster assembly" evidence=ISS;NAS

GO:0004123 "cystathionine gamma-lyase activity" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=ISS;NAS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006523 "alanine biosynthetic process" evidence=ISS

GO:0006534 "cysteine metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0031071 "cysteine desulfurase activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Y697	NFS1_HUMAN	2, ., 8, ., 1, ., 7	0.6957	0.8774	0.8774	yes	no
Q9Z1J3	NFS1_MOUSE	2, ., 8, ., 1, ., 7	0.6882	0.8774	0.8891	yes	no
Q99P39	NFS1_RAT	2, ., 8, ., 1, ., 7	0.6882	0.8774	0.8891	yes	no
Q47EN5	ISCS_DECAR	2, ., 8, ., 1, ., 7	0.5935	0.8730	0.9851	yes	no
A1RJ52	ISCS_SHESW	2, ., 8, ., 1, ., 7	0.6019	0.8730	0.9876	yes	no
Q4UL77	ISCS_RICFE	2, ., 8, ., 1, ., 7	0.645	0.8752	0.9756	yes	no
Q0HVP4	ISCS_SHESR	2, ., 8, ., 1, ., 7	0.6094	0.8730	0.9876	yes	no
B8F356	ISCS_HAEPS	2, ., 8, ., 1, ., 7	0.6172	0.8708	0.9802	yes	no
O74351	NFS1_SCHPO	2, ., 8, ., 1, ., 7	0.6132	0.9124	0.8323	yes	no
A3QFD5	ISCS_SHELP	2, ., 8, ., 1, ., 7	0.5945	0.8730	0.9876	yes	no
Q7MNG2	ISCS_VIBVY	2, ., 8, ., 1, ., 7	0.5945	0.8730	0.9876	yes	no
P87187	NFS1_CANMA	2, ., 8, ., 1, ., 7	0.5978	0.9868	0.9318	N/A	no
P87185	NFS1_CANAL	2, ., 8, ., 1, ., 7	0.6426	0.8752	0.8196	N/A	no
C3PNQ8	ISCS_RICAE	2, ., 8, ., 1, ., 7	0.65	0.8752	0.9756	yes	no
Q080P6	ISCS_SHEFN	2, ., 8, ., 1, ., 7	0.5895	0.8730	0.9876	yes	no
B8CMW5	ISCS_SHEPW	2, ., 8, ., 1, ., 7	0.5920	0.8730	0.9876	yes	no
O60028	NFS1_ASHGO	2, ., 8, ., 1, ., 7	0.6259	0.8752	0.8163	yes	no
A0KJ32	ISCS_AERHH	2, ., 8, ., 1, ., 7	0.5870	0.8730	0.9876	yes	no
O49543	NFS1_ARATH	2, ., 8, ., 1, ., 7	0.7729	0.9890	0.9977	yes	no
P25374	NFS1_YEAST	2, ., 8, ., 1, ., 7	0.6309	0.8752	0.8048	yes	no
Q5RDE7	NFS1_PONAB	2, ., 8, ., 1, ., 7	0.6957	0.8774	0.8774	yes	no
Q92HP1	ISCS_RICCN	2, ., 8, ., 1, ., 7	0.6425	0.8752	0.9756	yes	no
A7MU48	ISCS_VIBHB	2, ., 8, ., 1, ., 7	0.6069	0.8730	0.9876	yes	no
A8F204	ISCS_RICM5	2, ., 8, ., 1, ., 7	0.64	0.8752	0.9756	yes	no
Q2GGJ4	ISCS_EHRCR	2, ., 8, ., 1, ., 7	0.6184	0.8730	0.9731	yes	no
B1KNI3	ISCS_SHEWM	2, ., 8, ., 1, ., 7	0.5920	0.8730	0.9876	yes	no
Q9ZD60	ISCS_RICPR	2, ., 8, ., 1, ., 7	0.63	0.8752	0.9756	yes	no
Q1RHY6	ISCS_RICBR	2, ., 8, ., 1, ., 7	0.6325	0.8752	0.9756	yes	no
Q9VKD3	NFS1_DROME	2, ., 8, ., 1, ., 7	0.6337	0.9934	0.9826	yes	no
Q65RS7	ISCS_MANSM	2, ., 8, ., 1, ., 7	0.5955	0.8708	0.9851	yes	no
A8GNU0	ISCS_RICAH	2, ., 8, ., 1, ., 7	0.64	0.8752	0.9756	yes	no
Q12P83	ISCS_SHEDO	2, ., 8, ., 1, ., 7	0.5820	0.8730	0.9876	yes	no
Q68WP6	ISCS_RICTY	2, ., 8, ., 1, ., 7	0.6325	0.8752	0.9756	yes	no
C4K1Z7	ISCS_RICPU	2, ., 8, ., 1, ., 7	0.64	0.8752	0.9756	yes	no
B0YLW6	NFS1_TRAHO	2, ., 8, ., 1, ., 7	0.6268	0.8665	0.8979	N/A	no
A8GSG4	ISCS_RICRS	2, ., 8, ., 1, ., 7	0.6375	0.8752	0.9756	yes	no
A4Y7D7	ISCS_SHEPC	2, ., 8, ., 1, ., 7	0.6019	0.8730	0.9876	yes	no
Q54X04	NFS1_DICDI	2, ., 8, ., 1, ., 7	0.6560	0.8905	0.9044	yes	no
B0BXX6	ISCS_RICRO	2, ., 8, ., 1, ., 7	0.6375	0.8752	0.9756	yes	no
A8GWB2	ISCS_RICB8	2, ., 8, ., 1, ., 7	0.635	0.8752	0.9756	yes	no
Q8SQS2	NFS1_ENCCU	2, ., 8, ., 1, ., 7	0.6191	0.8840	0.9351	yes	no
A8FXA5	ISCS_SHESH	2, ., 8, ., 1, ., 7	0.5845	0.8730	0.9876	yes	no
Q87S28	ISCS_VIBPA	2, ., 8, ., 1, ., 7	0.6044	0.8730	0.9876	yes	no
Q8EEU9	ISCS_SHEON	2, ., 8, ., 1, ., 7	0.6094	0.8730	0.9876	yes	no
Q0I1L2	ISCS_HAES1	2, ., 8, ., 1, ., 7	0.5796	0.8730	0.9876	yes	no
Q8DEY7	ISCS_VIBVU	2, ., 8, ., 1, ., 7	0.5945	0.8730	0.9876	yes	no
C4L7K2	ISCS_TOLAT	2, ., 8, ., 1, ., 7	0.5920	0.8730	0.9876	yes	no
A1S544	ISCS_SHEAM	2, ., 8, ., 1, ., 7	0.6019	0.8730	0.9876	yes	no
A8EYH9	ISCS_RICCK	2, ., 8, ., 1, ., 7	0.645	0.8752	0.9756	yes	no
A6VMN7	ISCS_ACTSZ	2, ., 8, ., 1, ., 7	0.5995	0.8730	0.9876	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.8.1.7	0.979
3rd Layer	2.8.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	fgenesh4_pm.C_LG_I001118	hypothetical protein (460 aa)	•				•	•	•		0.991
	eugene3.00150565	SubName- Full=Putative uncharacterized protein; (165 aa)	•		•	•	•		•		0.987
	estExt_fgenesh4_pm.C_LG_XII0286	SubName- Full=Putative uncharacterized protein; (163 aa)	•		•	•	•		•		0.986
	gw1.19933.4.1	Predicted protein (110 aa)	•		•	•	•		•		0.985
	gw1.I.1555.1	hypothetical protein (409 aa)	•						•		0.946
	gw1.598.1.1	hypothetical protein (210 aa)	•			•	•		•		0.943
	fgenesh4_pg.C_LG_IV000050	hypothetical protein (554 aa)	•						•		0.915
	grail3.0047024601	adrenodoxin-like ferredoxin protein (199 aa)	•		•	•	•		•		0.867
	estExt_fgenesh4_pm.C_2080014	adrenodoxin-like ferredoxin protein (199 aa)	•		•	•	•		•		0.866
	gw1.V.3435.1	3-mercaptopyruvate sulfurtransferase (EC-2.8.1.1) (334 aa)	•				•	•	•		0.865

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	457
PRK14012	404	PRK14012, PRK14012, cysteine desulfurase; Provisio	0.0
PLN02651	364	PLN02651, PLN02651, cysteine desulfurase	0.0
TIGR02006	402	TIGR02006, IscS, cysteine desulfurase IscS	0.0
COG1104	386	COG1104, NifS, Cysteine sulfinate desulfinase/cyst	0.0
TIGR03402	379	TIGR03402, FeS_nifS, cysteine desulfurase NifS	0.0
TIGR03235	353	TIGR03235, DNA_S_dndA, cysteine desulfurase DndA	1e-149
TIGR03403	382	TIGR03403, nifS_epsilon, cysteine desulfurase, Nif	1e-116
pfam00266	370	pfam00266, Aminotran_5, Aminotransferase class-V	1e-109
PRK02948	381	PRK02948, PRK02948, cysteine desulfurase; Provisio	5e-91
cd06453	373	cd06453, SufS_like, Cysteine desulfurase (SufS)-li	1e-67
COG0520	405	COG0520, csdA, Selenocysteine lyase/Cysteine desul	2e-63
TIGR01977	376	TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa	2e-55
TIGR01979	403	TIGR01979, sufS, cysteine desulfurases, SufSfamily	8e-48
PLN02855	424	PLN02855, PLN02855, Bifunctional selenocysteine ly	3e-30
PRK09295	406	PRK09295, PRK09295, bifunctional cysteine desulfur	2e-29
TIGR03392	398	TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat	4e-24
PRK10874	401	PRK10874, PRK10874, cysteine sulfinate desulfinase	2e-20
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	4e-17
TIGR01976	397	TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa	1e-16
cd06450	345	cd06450, DOPA_deC_like, DOPA decarboxylase family	1e-15
TIGR04343	370	TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe	2e-11
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	3e-10
TIGR03812	373	TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase	9e-09
TIGR03301	355	TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate amin	2e-08
COG0075	383	COG0075, COG0075, Serine-pyruvate aminotransferase	7e-08
PRK13520	371	PRK13520, PRK13520, L-tyrosine decarboxylase; Prov	7e-08
pfam01212	288	pfam01212, Beta_elim_lyase, Beta-eliminating lyase	3e-07
COG2008	342	COG2008, GLY1, Threonine aldolase [Amino acid tran	4e-07
PRK09331	387	PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase;	1e-05
PLN02724	805	PLN02724, PLN02724, Molybdenum cofactor sulfurase	3e-05
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	1e-04
cd06502	338	cd06502, TA_like, Low-specificity threonine aldola	1e-04
TIGR02539	370	TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRN	2e-04
COG3844	407	COG3844, COG3844, Kynureninase [Amino acid transpo	3e-04
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	4e-04
cd06452	361	cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase	7e-04
PRK13479	368	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruv	8e-04
PRK05957	389	PRK05957, PRK05957, aspartate aminotransferase; Pr	0.001
cd06451	356	cd06451, AGAT_like, Alanine-glyoxylate aminotransf	0.001
COG0399	374	COG0399, WecE, Predicted pyridoxal phosphate-depen	0.002
COG1103	382	COG1103, COG1103, Archaea-specific pyridoxal phosp	0.002
TIGR03799	522	TIGR03799, NOD_PanD_pyr, putative pyridoxal-depend	0.003
PRK04366	481	PRK04366, PRK04366, glycine dehydrogenase subunit	0.004
cd00616	352	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid s	0.004

>gnl|CDD|184450 PRK14012, PRK14012, cysteine desulfurase; Provisional

 Score =  731 bits (1890), Expect = 0.0
 Identities = 253/403 (62%), Positives = 330/403 (81%), Gaps = 5/403 (1%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSR---YGNPHSRTHLFGWESEVAVETARSQIADLI 114
           P+YLD  ATTPVDPRV + M+P YL+    +GNP SR+H FGW++E AV+ AR+QIADLI
Sbjct: 4   PIYLDYSATTPVDPRVAEKMMP-YLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI 62

Query: 115 GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
           GA P+EI+FTSGATES+N++IKG  HFY+ K +H+IT++TEHK VLD+CR L++EGFE+T
Sbjct: 63  GADPREIVFTSGATESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT 122

Query: 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234
           YL   ++GI++L++L AA+R DT L+S+M VNNEIGVIQ +  IG+IC+E  I FH DAA
Sbjct: 123 YLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAA 182

Query: 235 QALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSG 294
           Q++GK+P+D+ K  V LMS S HKIYGPKG+GALY+RR+PR+R+E  ++GGG ERG+RSG
Sbjct: 183 QSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSG 242

Query: 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354
           TLPT  IVG G A  IAK+EM  +++RI AL DRL NGIK+ ++ V +NG +E+R  GNL
Sbjct: 243 TLPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPGNL 301

Query: 355 NLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
           N+SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFT
Sbjct: 302 NVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 361

Query: 415 TEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           TE E+D AIEL  K + KLRE+SPL+EM KEG+D+  I+WA H
Sbjct: 362 TEEEIDYAIELVRKSIGKLRELSPLWEMFKEGVDLNSIEWAHH 404

Length = 404

>gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase

 Score =  706 bits (1823), Expect = 0.0
 Identities = 288/364 (79%), Positives = 326/364 (89%), Gaps = 2/364 (0%)

Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           LYLDMQATTP+DPRVLDAMLPF +  +GNPHSRTHL+GWESE AVE AR+Q+A LIGA P
Sbjct: 1   LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADP 60

Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
           KEIIFTSGATESNN++IKGVMHFYKDKK+HVITTQTEHKCVLDSCRHLQQEGFE+TYLPV
Sbjct: 61  KEIIFTSGATESNNLAIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPV 120

Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
            +DG+V+LDEL AAIRPDT L+SVMAVNNEIGVIQP+EEIG++C+E K+ FHTDAAQA+G
Sbjct: 121 KSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVG 180

Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT 298
           KIPVDV+   V LMS+SGHKIYGPKGVGALY+RRRPR+R+EPL++GGGQERG RSGT  T
Sbjct: 181 KIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENT 240

Query: 299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNG--SMERRYIGNLNL 356
           PL+VG G+ACE+A KEMDYD K + AL +RLLNG++ KL GV VNG    E+RY G LNL
Sbjct: 241 PLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNL 300

Query: 357 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV E+MAH S+R G+GRFTTE
Sbjct: 301 SFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTE 360

Query: 417 AEVD 420
            EVD
Sbjct: 361 EEVD 364

Length = 364

>gnl|CDD|131061 TIGR02006, IscS, cysteine desulfurase IscS

 Score =  649 bits (1676), Expect = 0.0
 Identities = 255/400 (63%), Positives = 331/400 (82%), Gaps = 1/400 (0%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           P+YLD  ATTPVDPRV + M+P+   ++GNP SR+H FGWE+E AVE AR+Q+A+LIGA 
Sbjct: 4   PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGAD 63

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
            +EI+FTSGATESNN++IKG+ HFYK K  H+IT++TEHK VLD+CR+L++EGFE+TYLP
Sbjct: 64  SREIVFTSGATESNNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLP 123

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
             ++G+++L+EL+AAIR DT L+S+M VNNEIGVIQ +  IG+IC+E K+ FH DAAQ++
Sbjct: 124 PKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSV 183

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP++V +  V LMS+SGHKIYGPKG+GALY+RR+PR+R+E LI+GGG ERG+RSGTLP
Sbjct: 184 GKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLP 243

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
           T  IVG G A  IAK+EM  D   + AL DRLLNGIK  ++ V +NG +E R  GNLN+S
Sbjct: 244 THQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPGNLNVS 302

Query: 358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           F YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF IGRFTTE 
Sbjct: 303 FNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEE 362

Query: 418 EVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           E+D A++L    ++KLRE+SPL+EM KEG+D+  I+WA H
Sbjct: 363 EIDYAVKLVKSAIDKLRELSPLWEMFKEGVDLNSIEWAAH 402

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Protein synthesis, tRNA and rRNA base modification]. Length = 402

>gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

 Score =  596 bits (1540), Expect = 0.0
 Identities = 219/389 (56%), Positives = 287/389 (73%), Gaps = 7/389 (1%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
             +YLD  ATTPVDP VL+AMLP+    +GNP S  H FG E+  AVE AR QIA L+GA
Sbjct: 1   MMIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGA 59

Query: 117 SPKEIIFTSGATESNNVSIKGVMHFY--KDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
            P+EIIFTSGATESNN++IKG    Y    K +H+IT+  EH  VL++CR+L+++GFE+T
Sbjct: 60  DPEEIIFTSGATESNNLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVT 119

Query: 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234
           YLPV ++G+V+L++L  A+RPDT L+S+M  NNE G IQP+ EIG+ICKE  I FH DA 
Sbjct: 120 YLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAV 179

Query: 235 QALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSG 294
           QA+GKIP+D+E+  V L+S S HK  GPKG+GALY+  RP +R+EPLI+GGGQERG+RSG
Sbjct: 180 QAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYV--RPGVRLEPLIHGGGQERGLRSG 237

Query: 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354
           T   P IVGFG A EIA +E++ ++ R+  L DRL +G+ E +  V +NG  E R    L
Sbjct: 238 TENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNIL 297

Query: 355 NLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR 412
           N SF  VEGESLL+ L    +AVS+GSAC+S SLEPS+VLRA+G+ E++AH SIRF +GR
Sbjct: 298 NFSFPGVEGESLLLALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGR 357

Query: 413 FTTEAEVDRAIELTVKQVEKLREMSPLYE 441
           FTTE E+D A E   + +++LRE+SPL+ 
Sbjct: 358 FTTEEEIDAAAEALKEIIKRLRELSPLWA 386

Length = 386

>gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS

 Score =  514 bits (1326), Expect = 0.0
 Identities = 197/382 (51%), Positives = 265/382 (69%), Gaps = 6/382 (1%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLD  ATT VDP VL+AMLP++   +GNP S  H FG E   AVE AR Q+A L+GA P 
Sbjct: 2   YLDNNATTRVDPEVLEAMLPYFTEYFGNP-SSMHSFGGEVGKAVEEAREQVAKLLGAEPD 60

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           EIIFTSG TES+N +IK  +    +K RH+ITT  EH  VL  C+HL+++G+++TYLPV 
Sbjct: 61  EIIFTSGGTESDNTAIKSALAAQPEK-RHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVD 119

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
            +G ++L+ELRAAI  DT L+SVM  NNE G I P+EEIG+I KE    FHTDA QA+GK
Sbjct: 120 EEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGK 179

Query: 240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
           IP+D+++ N+ ++SLSGHK++GPKGVGALY+R+  R R  PL+ GG QERG R+GT   P
Sbjct: 180 IPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGTRFR--PLLRGGHQERGRRAGTENVP 237

Query: 300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
            IVG G A E+A + ++ ++ R+ AL DRL  G+  ++    +NG   +R    +N+SF 
Sbjct: 238 GIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFE 297

Query: 360 YVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           Y+EGE++L+ L    +  SSGSACTS SLEPS+VLRA+GV    AH SIRF + R+ TE 
Sbjct: 298 YIEGEAILLLLDMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEE 357

Query: 418 EVDRAIELTVKQVEKLREMSPL 439
           ++D  +E+    + +LR MSP 
Sbjct: 358 DIDYVLEVLPPIIARLRAMSPF 379

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379

>gnl|CDD|163191 TIGR03235, DNA_S_dndA, cysteine desulfurase DndA

 Score =  429 bits (1104), Expect = e-149
 Identities = 173/353 (49%), Positives = 241/353 (68%), Gaps = 6/353 (1%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLD  ATTP+DP V +AMLP+ L  +GNP SRTH FG  ++ AVE AR Q+A+ +GA  +
Sbjct: 1   YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE 60

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDK-KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
           E+IFTSGATESNN++I G+    + K K+H+IT+  EH  VL+  R L++ GF +TYLPV
Sbjct: 61  EVIFTSGATESNNLAILGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPV 120

Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
              G +++DEL  AIRPDT L+S+M VNNE G IQP+ EI ++ +  +  FH DAAQ +G
Sbjct: 121 DESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVG 180

Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRR--PRIRVEPLINGGGQERGIRSGTL 296
           KI VD+    + L+S SGHKIYGPKG+GAL +R+R  P+  ++P++ GGGQERG+R GTL
Sbjct: 181 KITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTL 240

Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
           P  LIVG G A EIA++       ++ A+ ++L + ++    GV +NG         LN 
Sbjct: 241 PVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNGDPAETIPHILNF 298

Query: 357 SFAYVEGESLLMGLKE-VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF 408
           S   V  E+L++ L+   AVS+GSAC+S+  EPS+VL+A+G+D D A  +IRF
Sbjct: 299 SIDGVNSEALIVNLRADAAVSTGSACSSSKYEPSHVLQAMGLDTDRARGAIRF 351

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase [DNA metabolism, Restriction/modification]. Length = 353

>gnl|CDD|132444 TIGR03403, nifS_epsilon, cysteine desulfurase, NifS family, epsilon proteobacteria type

 Score =  346 bits (888), Expect = e-116
 Identities = 172/384 (44%), Positives = 237/384 (61%), Gaps = 9/384 (2%)

Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           +YLD  ATT +DP+V + M PF+   YGNP+S  H FG  +  A+  A  ++   I A  
Sbjct: 1   VYLDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARD 59

Query: 119 KE-IIFTSGATESNNVSIKGVM--HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
            + II TS ATESNN  +KGV      K  K H+ITT+ EH  V  +C  L+  G E+TY
Sbjct: 60  LDDIIITSCATESNNWVLKGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTY 119

Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           LP+   G +  +++R AI   T L+SVM  NNE G+I P++EIG+ICKE  + FHTDA Q
Sbjct: 120 LPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQ 179

Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
           A+GKIPVDV+K  V  +S S HK +GPKGVG LY+R+   + + PL +GG    G RSGT
Sbjct: 180 AIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRK--GVELTPLFHGGEHMGGRRSGT 237

Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
           L  P IV  G A  +A + +D++   +  L DRL + + E  D  VV G  E R    + 
Sbjct: 238 LNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLELPDVFVV-GDREHRVPNTIL 296

Query: 356 LSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF 413
           +S   VEGE++L  L +  +A S+GSAC S  LE + V+ A+G D+++AHT+IR  + RF
Sbjct: 297 ISIKGVEGEAMLWDLNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRF 356

Query: 414 TTEAEVDRAIELTVKQVEKLREMS 437
           TTE E+D  IE+  K V++LR +S
Sbjct: 357 TTEEEIDYTIEVFKKAVQRLRAIS 380

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PMID:11123951), so we use this designation. Length = 382

>gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V

 Score =  326 bits (837), Expect = e-109
 Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 32/381 (8%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SP 118
           YLD  ATT     VLDA+  +Y    GN H   H  G E+  A E AR ++A+ I A S 
Sbjct: 2   YLDSAATTQKPQAVLDALQEYYTDYNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSD 61

Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLP 177
           +EIIFTSG TE+ N+    +    K     ++ T+ EH   L   + L ++ G  +  +P
Sbjct: 62  EEIIFTSGTTEAINLVAISLGRSLK-PGDEILVTEMEHHANLVPWQELAKRTGATVRVIP 120

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           V  +G+++LD L   + P T L+++  V+N  G + P+EEIG++  E+      DAAQA+
Sbjct: 121 VDPNGLLDLDALEKLLTPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAV 180

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG-------QERG 290
           G  P+DV+   V  ++ SGHK+YGP G+G LY RR    ++ PL+ GGG       QE  
Sbjct: 181 GHRPIDVQALGVDFLAFSGHKLYGPTGIGVLYGRRDLLEKLPPLLGGGGMIDTVSLQETT 240

Query: 291 -------IRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV 342
                    +GT     I+G G+A + +A+  ++   K    L   L   +   + G+ +
Sbjct: 241 FADAPSKFEAGTPNIAGIIGLGAALDYLAEIGLEAIEKHERELAAYLYERLLA-IPGIRL 299

Query: 343 NGSMERRYIGNLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDED 400
            G    R    ++ +F  V    +   L E  +AV SG  C     +P  V   L     
Sbjct: 300 YGPPAERRPSIISFNFPGVHPHDVATLLDERGIAVRSGHHCA----QPLMVRLGL----- 350

Query: 401 MAHTSIRFGIGRFTTEAEVDR 421
               ++R  +  + TE EVDR
Sbjct: 351 --GGTLRASLYFYNTEEEVDR 369

This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370

>gnl|CDD|179511 PRK02948, PRK02948, cysteine desulfurase; Provisional

 Score =  280 bits (719), Expect = 5e-91
 Identities = 126/367 (34%), Positives = 198/367 (53%), Gaps = 5/367 (1%)

Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           +YLD  ATTP+    L          +GN  S  H  G  +   ++  R   A++IG   
Sbjct: 2   IYLDYAATTPMSKEALQTYQKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEE 60

Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
           + I FTSG TESN ++I+ +++     K+H+ITT  EH  +    + L+ +G+ +T +PV
Sbjct: 61  QGIYFTSGGTESNYLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPV 120

Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
              G++ L +L  AI PDT L S+   N+EIG IQP+ EIG + K++ + FH+D  Q  G
Sbjct: 121 DKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFG 180

Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT 298
           K+P+DV +  +  +S+S HKIYGPKGVGA+Y+   P++R +P+  G   E+G R GT+  
Sbjct: 181 KLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYI--NPQVRWKPVFPGTTHEKGFRPGTVNV 238

Query: 299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358
           P I  F +A E   K M  +  R   L    L  I+     + V G         + ++ 
Sbjct: 239 PGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTI 298

Query: 359 AYVEGESLLM--GLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
             +EG+  ++    + +A+S+GSAC     EPS  + A+G   + A   +RF  G+ TT+
Sbjct: 299 KGIEGQYTMLECNRRGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTK 358

Query: 417 AEVDRAI 423
            ++D  I
Sbjct: 359 DQIDTTI 365

Length = 381

>gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like

 Score =  220 bits (563), Expect = 1e-67
 Identities = 112/388 (28%), Positives = 178/388 (45%), Gaps = 41/388 (10%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SP 118
           YLD  AT+     V+DA++ +Y     N H   H     +  A E AR ++A  I A SP
Sbjct: 2   YLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSP 61

Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE-GFEITYLP 177
            EIIFT   TE+ N+   G+          ++T+  EH   +   + L +  G ++  +P
Sbjct: 62  DEIIFTRNTTEAINLVAYGLG-RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVP 120

Query: 178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL 237
           V  DG ++L+ L   +   T L++V  V+N +G I P++EIG+I  E  +P   D AQ+ 
Sbjct: 121 VDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSA 180

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIR----- 292
           G +PVDV+      ++ SGHK+ GP G+G LY +      + P   GG     +      
Sbjct: 181 GHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETT 240

Query: 293 ---------SGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVV 342
                    +GT      +G G+A +  +K  M+        L    L  + E + GV V
Sbjct: 241 YADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRV 299

Query: 343 NGSMERRY-IGNLNLSFAYVEGE-----SLLMGLKEVAVSSGSACTSASLEPSYVLRALG 396
            G  E R  +    +SF  +EG      + ++    +AV +G  C     +P  ++R LG
Sbjct: 300 YGDAEDRAGV----VSFN-LEGIHPHDVATILDQYGIAVRAGHHCA----QP--LMRRLG 348

Query: 397 VDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
           V       ++R   G + TE E+D  +E
Sbjct: 349 VPG-----TVRASFGLYNTEEEIDALVE 371

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373

>gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

 Score =  209 bits (535), Expect = 2e-63
 Identities = 111/392 (28%), Positives = 182/392 (46%), Gaps = 34/392 (8%)

Query: 54  IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL 113
           +    +YLD  AT+     VLDA+  +Y     N H   H    E+    E AR  +A  
Sbjct: 19  VGKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARF 78

Query: 114 IGASP-KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE-GF 171
           + A    EI+FT G TE+ N+  +G+    K     ++ +  EH   +   + L +  G 
Sbjct: 79  LNADSSDEIVFTRGTTEALNLVARGLGRSLKPGD-EIVVSDLEHHSNIVPWQELAKRTGA 137

Query: 172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231
           ++  +P+  DG+++LD L   I P T L+++  V+N  G + P++EI ++  E       
Sbjct: 138 KVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLV 197

Query: 232 DAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGG---- 286
           DAAQA G +P+DV++     ++ SGHK + GP G+G LY+R+     +EP + GGG    
Sbjct: 198 DAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEY 257

Query: 287 ---------QERGIR--SGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIK 334
                     E  +R  +GT      +G  +A +   +  M+        L + LL G+ 
Sbjct: 258 VSRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLS 317

Query: 335 EKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVL 392
           E L GV + G  +    G ++ +   +    +   L E  +AV +G  C         + 
Sbjct: 318 E-LPGVEIYGPPDADRGGIVSFNVKGIHPHDVATLLDEKGIAVRAGHHCAQP------LH 370

Query: 393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
           R LGVD      +IR  +  + TE +VDR +E
Sbjct: 371 RLLGVDA-----TIRASLHLYNTEEDVDRLLE 397

Length = 405

>gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein

 Score =  188 bits (479), Expect = 2e-55
 Identities = 115/394 (29%), Positives = 191/394 (48%), Gaps = 51/394 (12%)

Query: 60  YLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS- 117
           Y D  ATT P    V +AM  FY +  G+P    +     +   VE  R  +A L  A  
Sbjct: 2   YFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPS 61

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE-GFEITYL 176
              ++FT+ AT + N+++KG++     +  HVITT  EH  V      L+++ G EIT +
Sbjct: 62  SAHVVFTNNATTALNIALKGLLK----EGDHVITTPMEHNSVARPLECLKEQIGVEITIV 117

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
               +G+++ + ++ AI+ +T LI V   +N  G I P+EEIG++ +E  I F  DAAQ 
Sbjct: 118 KCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQT 177

Query: 237 LGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGG---------- 285
            G IP+D+ +  + +++ +GHK + GP+G G LY+R    I+++PL +GG          
Sbjct: 178 AGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIRE--GIKLKPLKSGGTGSHSALIDQ 235

Query: 286 GQERGIR--SGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVV 342
             E   R  SGTL TP I G  +  +  +K  +    K+   L ++LLNG++E     + 
Sbjct: 236 PSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIY 295

Query: 343 NGSMERRYIGNLNLSFAYVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVDE 399
             +     +G ++ +   ++ E +   L E   +A  +G  C                  
Sbjct: 296 GPADPANRVGVVSFTVEGIDSEEVADILDEKFDIATRTGLHCAP---------------- 339

Query: 400 DMAHTS--------IRFGIGRFTTEAEVDRAIEL 425
            +AH +        IR  +G F TE E+++ +E 
Sbjct: 340 -LAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEA 372

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376

>gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily

 Score =  168 bits (429), Expect = 8e-48
 Identities = 105/395 (26%), Positives = 182/395 (46%), Gaps = 39/395 (9%)

Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           I G+PL YLD  AT+    +V+DA+  +Y +   N H   H     +  A E  R ++A 
Sbjct: 14  INGKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAK 73

Query: 113 LIGA-SPKEIIFTSGATES-NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE- 169
            I A S +EI+FT G TES N V+        K     ++ ++ EH   +   + L +  
Sbjct: 74  FINAASDEEIVFTRGTTESINLVAYSWGDSNLK-AGDEIVISEMEHHANIVPWQLLAERT 132

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPF 229
           G  + ++P+  DG ++LD+L   +   T L+++  V+N +G + P+EEI ++  +     
Sbjct: 133 GATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKV 192

Query: 230 HTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG--- 286
             D AQA+  +PVDV+  +      SGHK+YGP G+G LY +     ++ P + GG    
Sbjct: 193 LVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIA 252

Query: 287 ---------QERGIR--SGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIK 334
                     E   +  +GT     ++G G+A +  +   ++        L    L  + 
Sbjct: 253 EVSFEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERL- 311

Query: 335 EKLDGVVVNGSMERRYIGNLNLSFAYVEGE-----SLLMGLKEVAVSSGSACTSASLEPS 389
            ++ G+ + G  +    G + +SF  VEG        ++  + +AV SG  C     +P 
Sbjct: 312 GEIPGLRIYGPRDAEDRGGI-ISFN-VEGVHPHDVGTILDEEGIAVRSGHHCA----QP- 364

Query: 390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
            ++R  GV       + R     + TE ++D  +E
Sbjct: 365 -LMRRFGV-----PATCRASFYIYNTEEDIDALVE 393

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403

>gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase

 Score =  121 bits (305), Expect = 3e-30
 Identities = 105/399 (26%), Positives = 177/399 (44%), Gaps = 44/399 (11%)

Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G  L YLD  AT+     VLDA+  +Y     N H   H    ++  A E AR ++A 
Sbjct: 28  VNGSKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAA 87

Query: 113 LIGA-SPKEIIFTSGATESNN-VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG 170
            I A + +EI+FT  ATE+ N V+    +   K     +++    H  ++      Q+ G
Sbjct: 88  FINASTSREIVFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTG 147

Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
             + ++ +  D ++++++L+  +   T L++   V+N +G I P+E+I            
Sbjct: 148 AVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVL 207

Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
            DA Q++  +PVDV+      +  S HK+ GP G+G L+ +      + P + GG     
Sbjct: 208 VDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISD 267

Query: 291 I---RSGTLP--------TPLI---VGFGSACE-IAKKEMD----YDHKRITALHDRLLN 331
           +    S   P        TP I   +G G+A + +++  MD    Y+ +  T L+++L  
Sbjct: 268 VFLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLS- 326

Query: 332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG------ESLLMGLKEVAVSSGSACTSAS 385
                + GV + G      +G   L    VEG       + L     VA+ SG  C    
Sbjct: 327 ----SVPGVRIYGPKPSEGVGRAALCAFNVEGIHPTDLSTFLDQQHGVAIRSGHHCA--- 379

Query: 386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
            +P +  R LGV+   A  S+ F    + T+ EVD  I 
Sbjct: 380 -QPLH--RYLGVNAS-ARASLYF----YNTKEEVDAFIH 410

Length = 424

>gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated

 Score =  118 bits (298), Expect = 2e-29
 Identities = 110/415 (26%), Positives = 179/415 (43%), Gaps = 64/415 (15%)

Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H   H    ++   +E  R Q A 
Sbjct: 19  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAAL 78

Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A S +E++F  G TE  N+      +       ++I ++ EH   +   + L  + G
Sbjct: 79  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVG 138

Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L A     T L+++  V+N +G   P+ E+  +  +      
Sbjct: 139 AELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVL 198

Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ--- 287
            D AQA+   PVDV+  +      SGHK+YGP G+G LY+ +   ++  P   GGG    
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYV-KEALLQEMPPWEGGGSMIA 257

Query: 288 ----ERGI---------RSGTLPTPLIVGFGSACE---------IAKKE---MDYDHKRI 322
                 G           +GT  T  I+G G+A +         IA+ E   M Y   ++
Sbjct: 258 TVSLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQL 317

Query: 323 TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACT 382
            ++ D  L G + +L GV+           NL    AY  G S L     +AV +G  C 
Sbjct: 318 ESVPDLTLYGPQNRL-GVIAF---------NLGKHHAYDVG-SFLDNYG-IAVRTGHHC- 364

Query: 383 SASLEPSYVLRALGVDEDMAHTSI----RFGIGRFTTEAEVDRAIELTVKQVEKL 433
                      A+ +   MA+ ++    R  +  + T  EVDR +   ++++ +L
Sbjct: 365 -----------AMPL---MAYYNVPAMCRASLAMYNTHEEVDRLVA-GLQRIHRL 404

Length = 406

>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA

 Score =  103 bits (258), Expect = 4e-24
 Identities = 97/395 (24%), Positives = 163/395 (41%), Gaps = 34/395 (8%)

Query: 60  YLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS- 117
           YLD  A T + P+ V+DA   FY    G  H   H          E AR Q+A  + A  
Sbjct: 19  YLD-SAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPD 77

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYL 176
            + I++T G TES N+  +            +I ++ EH   L     + QQ G ++  L
Sbjct: 78  AENIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKL 137

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           P+GAD + ++ +L   + P T ++++  ++N  G    +     +  ++      D AQ 
Sbjct: 138 PIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQG 197

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIR-SGT 295
           +   P DV+  ++   + SGHK+YGP G+G LY +      + P   GG     +   G 
Sbjct: 198 VVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGF 257

Query: 296 LPTPL-------------IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV 342
           +P  +             ++G  +A E      D D     A    L +  +E+L  +  
Sbjct: 258 IPQAVPHRFEAGTPNIAGVIGLSAALEWLT---DIDIAAAEAWSVSLADLAEERLAQLPG 314

Query: 343 NGSMERRYIGNLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDED 400
             S        L   FA V    L   L E  +A+ +G  C     +P  ++ ALGV   
Sbjct: 315 FRSFRCPGSSLLAFDFAGVHHSDLAALLAESGIALRAGQHCA----QP--LMAALGVS-- 366

Query: 401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435
               ++R     + T+ +VD  ++     +E L +
Sbjct: 367 ---GTLRASFAPYNTQQDVDALVDAVGAALELLND 398

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398

>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional

 Score = 92.8 bits (231), Expect = 2e-20
 Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 4/213 (1%)

Query: 60  YLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-S 117
           YLD  A T + P+ V++A   FY    GN H              E AR Q+A L+ A  
Sbjct: 22  YLD-SAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPD 80

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYL 176
            K I++T G TES N+  +            +I ++ EH   L     + QQ G ++  L
Sbjct: 81  AKNIVWTRGTTESINLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKL 140

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           P+GAD + ++D L   I P T ++++  ++N  G    +     +  +  +    D AQ 
Sbjct: 141 PLGADRLPDVDLLPELITPRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQG 200

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALY 269
               P DV+  ++   + SGHK+YGP G+G LY
Sbjct: 201 AVHFPADVQALDIDFYAFSGHKLYGPTGIGVLY 233

Length = 401

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 83.2 bits (206), Expect = 4e-17
 Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 41/229 (17%)

Query: 98  ESEVAVETARSQIADLIGASPKEI-IFTSGATESNNVSIKGVMHFY-----------KDK 145
           E  V      + ++DL+GA  +    FTSG TE+N +++                     
Sbjct: 103 EERVV-----NMLSDLLGAPEEASGTFTSGGTEANLLALL-AARERWRKRALAESGKPGG 156

Query: 146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLP-VGADGIVNLDELRAAIRPDTGLISVMA 204
           K +++ ++T H     + R+L   G  +  +P V  D  +++D L  AI  +T    V+ 
Sbjct: 157 KPNIVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVVG 213

Query: 205 V--NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW-------NVSLMSLS 255
                + G I  +EE+  I +E+ I  H DAA     +P              V  +++ 
Sbjct: 214 TAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVD 273

Query: 256 GHKI-YGPKGVGALYMRRR---PRI-RVEPLINGGGQER-----GIRSG 294
           GHK    P G G +  R      RI         GG        G R G
Sbjct: 274 GHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPG 322

Length = 460

>gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily

 Score = 81.0 bits (200), Expect = 1e-16
 Identities = 83/397 (20%), Positives = 166/397 (41%), Gaps = 43/397 (10%)

Query: 56  GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
           G  ++ D  A T +   V DA+    L+R        +     ++  V+ AR  +ADL+ 
Sbjct: 16  GDRVFFDNPAGTQIPQSVADAVSA-ALTRSNANRGGAYESSRRADQVVDDAREAVADLLN 74

Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEIT 174
           A P E++F + AT    +  + +   +      VI T+ +H+  +    +  ++ G ++ 
Sbjct: 75  ADPPEVVFGANATSLTFLLSRAISRRWGPGDE-VIVTRLDHEANISPWLQAAERAGAKVK 133

Query: 175 YLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDA 233
           +  V  A G ++ D+L + + P T L++V A +N +G I  +  I ++          DA
Sbjct: 134 WARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDA 193

Query: 234 AQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRR--RPRI---RVEPLINGGGQE 288
                   +DV+      ++ S +K +GP  +G L+ R      +   ++    + G + 
Sbjct: 194 VHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPE- 251

Query: 289 RGIRSGTLPTPLIVGFGSACE-----------------IAKKEMDYDHKRITALHDRLLN 331
                GT    L+ G  +A +                 +A  +    ++    L + LL 
Sbjct: 252 -RFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYEN--RLAEYLLV 308

Query: 332 GIKEKLDGVVVNG--SMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPS 389
           G+ + L GV + G   +  R +  ++ +   +  + ++  L +  + + +    A     
Sbjct: 309 GLSD-LPGVTLYGVARLAAR-VPTVSFTVHGLPPQRVVRRLADQGIDAWAGHFYA----V 362

Query: 390 YVLRALGV-DEDMAHTSIRFGIGRFTTEAEVDRAIEL 425
            +LR LG+ DE      +R G+  + T  EVDR +E 
Sbjct: 363 RLLRRLGLNDEGGV---VRVGLAHYNTAEEVDRLLEA 396

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397

>gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family

 Score = 77.6 bits (192), Expect = 1e-15
 Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 42/193 (21%)

Query: 111 ADLIGASPKEI--IFTSGATESNNVSIKGVMHFYKDKKRH--------------VITTQT 154
           A L G   ++   +FTSG +ESN +++       +D+ R               ++ +  
Sbjct: 48  AKLFGLPSEDADGVFTSGGSESNLLALLA----ARDRARKRLKAGGGRGIDKLVIVCSDQ 103

Query: 155 EHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT--GLISVMAV----NNE 208
            H  V  +  +L  +   +   PV  DG ++ + L AAI  D   GL  +M V      +
Sbjct: 104 AHVSVEKAAAYLDVKVRLV---PVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTD 160

Query: 209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD--------VEKWNVSLMSLSGHKIY 260
            G I P+EEI  + +++ +  H DAA     +P          +E   V  +S+  HK Y
Sbjct: 161 TGAIDPLEEIADLAEKYDLWLHVDAAYGGFLLPFPEPRHLDFGIE--RVDSISVDPHK-Y 217

Query: 261 G--PKGVGALYMR 271
           G  P G  A+ +R
Sbjct: 218 GLVPLGCSAVLVR 230

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345

>gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 51/179 (28%), Positives = 85/179 (47%), Gaps = 17/179 (9%)

Query: 101 VAVETA-------RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ 153
           VA E A       R+ +A L G    +++FT+G+  + ++ +      +    R V    
Sbjct: 47  VAAEAAAPVLDAGRAAVAALTGMPAADVVFTTGSNHALDLLLGS----WPGPSRTVACLP 102

Query: 154 TEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT-GLISVMAVNNEIGVI 212
            E+   L     +   GFE+  LPV  DG +++D   +A+R D   L+ +  V +  G +
Sbjct: 103 GEYGPNLAI---MAAHGFEVRELPVDDDGRLDVDGAASALRADPPALVHLTVVGSHRGTV 159

Query: 213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMR 271
           QP   + ++C+   +P   DAAQALG +  D      +  S S   + GP+GVG L +R
Sbjct: 160 QPAAAVAELCRAAGVPLVVDAAQALGHL--DCAVGADAYYSSSRKWLAGPRGVGVLAVR 216

Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 38/170 (22%), Positives = 64/170 (37%), Gaps = 16/170 (9%)

Query: 110 IADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE 169
           +A L+     + +F    T +N       +         VI     H         L   
Sbjct: 9   LARLLQPGNDKAVFVPSGTGANEA----ALLALLGPGDEVIVDANGHGSRYWVAAELA-- 62

Query: 170 GFEITYLPV---GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK 226
           G +   +PV   G  G+          +P+  LI +       GV+ P++EI +I KE+ 
Sbjct: 63  GAKPVPVPVDDAGYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYG 122

Query: 227 IPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMR 271
           I    DAA A G      + +     +V  ++ S HK  G +G G + ++
Sbjct: 123 ILLLVDAASAGGASPAPGVLIPEGGADV--VTFSLHKNLGGEGGGVVIVK 170

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|234361 TIGR03812, tyr_de_CO2_Arch, tyrosine decarboxylase MnfA

 Score = 56.6 bits (137), Expect = 9e-09
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 5/127 (3%)

Query: 110 IADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSCRHLQ 167
           + +L+          SG TE+N  +++   +  +++KR  ++I  ++ H     +   L 
Sbjct: 68  LGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEML- 126

Query: 168 QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKI 227
             G E+ Y P+  D  V++ ++   I  +T  I  +A   E+G I  +EE+ +I  E  I
Sbjct: 127 --GLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEELSKIALENGI 184

Query: 228 PFHTDAA 234
             H DAA
Sbjct: 185 YLHVDAA 191

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 373

>gnl|CDD|213793 TIGR03301, PhnW-AepZ, 2-aminoethylphosphonate aminotransferase

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 12/183 (6%)

Query: 97  WESEVA--VETARSQIADLIGASPKE--IIFTSGATESNNVSIKGVMHFYKDKKRHVITT 152
           W+SE     +  R ++  L G       ++     T +   +I  ++   +D K  V+  
Sbjct: 25  WDSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLVP--RDGKLLVLIN 82

Query: 153 QTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI--G 210
               + +   C +L   G   T L        +L+ +  A+  D  +  V  V++E   G
Sbjct: 83  GAYGERLAKICEYL---GIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTG 139

Query: 211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALY 269
           ++ P+E I ++ +        DA  + G IP+D+E+ +V  +  S +K + G  G G + 
Sbjct: 140 ILNPLEAIAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVI 199

Query: 270 MRR 272
            RR
Sbjct: 200 ARR 202

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level TIGR02326. The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. Length = 355

>gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

 Score = 54.2 bits (131), Expect = 7e-08
 Identities = 38/167 (22%), Positives = 71/167 (42%), Gaps = 15/167 (8%)

Query: 184 VNLDELRAAIRPDTGLISVMAVNNEI--GVIQPMEEIGQICKEFKIPFHTDAAQALGKIP 241
           V+ +E+  A+  D  + +V  V+NE   GV+ P++EI +  KE       DA  +LG  P
Sbjct: 117 VDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVSSLGGEP 176

Query: 242 VDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRP--RIRVEPLIN---------GGGQER 289
           + V++W + +      K +  P G+  + +  R    I      +            +++
Sbjct: 177 LKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKK 236

Query: 290 GIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKE 335
           G    T P  LI     A ++  +E ++    R   L + L  G++ 
Sbjct: 237 GSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA 283

Length = 383

>gnl|CDD|237409 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional

 Score = 53.7 bits (130), Expect = 7e-08
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI 183
           TSG TE+N  +++   +  K +K +++  ++ H     +   L   G E+   P+  D  
Sbjct: 82  TSGGTEANIQAVRAARNLAKAEKPNIVVPESAHFSFDKAADML---GVELRRAPLDDDYR 138

Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234
           V++  +   I  +T  I  +A   E+G + P+ E+ +I  E  I  H DAA
Sbjct: 139 VDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELSKIALENGIFLHVDAA 189

Length = 371

>gnl|CDD|216367 pfam01212, Beta_elim_lyase, Beta-eliminating lyase

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 71/266 (26%), Positives = 100/266 (37%), Gaps = 64/266 (24%)

Query: 110 IADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQ 168
           +A+L G   +  +F    T +N +++        +    VI  +  H    D    H + 
Sbjct: 41  VAELFGK--EAALFVPSGTMANQLALMAHCRRGDE----VICGEPAHIY-FDETGGHAEL 93

Query: 169 EGFEITYLPVGADGIVNLDELRAAIRPD-------TGLISV-MAVNNEIGVIQPMEE--- 217
            G +   LP    G ++L++L AAIRP        TGLIS+    N+  G +  +EE   
Sbjct: 94  GGAQPVPLPGAEAGKLDLEDLEAAIRPVGDIHFPPTGLISLENTHNSAGGQVVSLEELRE 153

Query: 218 IGQICKEFKIPFHTD------AAQALGKIP------VDVEKWNVSLMSLSGHKIYGPKGV 265
           I  I +E  IP H D      AA ALG I        D     VS MSLS       KG+
Sbjct: 154 IRAIAREHGIPLHLDGARLANAAVALGVIVKEITSYADS----VS-MSLS-------KGL 201

Query: 266 GA-----LYMRR---RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDY 317
           GA     L           R    + GG ++ G+        L      A E     +  
Sbjct: 202 GAPVGSVLAGSDDFIAYARRQRKYLGGGMRQAGV--------LAAAGLRALEEGVARLGR 253

Query: 318 DHKRITALHDRLLNGIKEKLDGVVVN 343
           DH     L + L     E L GV+  
Sbjct: 254 DHATARRLAEGL-----ELLRGVIPR 274

Length = 288

>gnl|CDD|224919 COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism]

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 27/183 (14%)

Query: 103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH--VITTQTEHKCVL 160
                 +IA+L G      +F    T++N +++          +    VI  +T H    
Sbjct: 37  TNALEQRIAELFGKE--AALFVPSGTQANQLALAAHC------QPGESVICHETAHIY-T 87

Query: 161 DSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPD------TGLISVMAVNNEIGVIQ 213
           D C   +  G       V GADG +  +++ AAIRPD      T L  +     E G + 
Sbjct: 88  DECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVY 147

Query: 214 PMEE---IGQICKEFKIPFHTDAAQ---ALGKIPVDVEKWN--VSLMSLSGHKIYGPKGV 265
           P++E   I  +CKE  +P H D A+   AL  + V ++     V  +S    K  G   V
Sbjct: 148 PLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGA-PV 206

Query: 266 GAL 268
           GA+
Sbjct: 207 GAI 209

Length = 342

>gnl|CDD|236469 PRK09331, PRK09331, Sep-tRNA:Cys-tRNA synthetase; Provisional

 Score = 47.2 bits (113), Expect = 1e-05
 Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 36/179 (20%)

Query: 110 IADLIGASPK-----EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR 164
           IAD      +     E   T GA E        VMH    K  +V         VLD   
Sbjct: 65  IADFHEDLAEFLGMDEARVTHGAREGKFA----VMHSLCKKGDYV---------VLDGLA 111

Query: 165 H------LQQEGFEITYLPVG--ADGIVNLDELRAAI---RPDTG----LISVMAVNNEI 209
           H       ++ G  +  +P     +  +  +     I   + +TG    L  +  V+   
Sbjct: 112 HYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNY 171

Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY---GPKGV 265
           G +   +++ ++  E+ IPF  + A  +G++PVD +K     +  SGHK      P GV
Sbjct: 172 GNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGV 230

Length = 387

>gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase

 Score = 46.4 bits (110), Expect = 3e-05
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 4/73 (5%)

Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGAS 117
           +YLD    T      L+A L  + S  YGNPHS++      S+  +E+AR Q+ +   A 
Sbjct: 36  VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSD-TIESARQQVLEYFNAP 94

Query: 118 PKE--IIFTSGAT 128
           P +   +FTSGAT
Sbjct: 95  PSDYACVFTSGAT 107

Length = 805

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 37/178 (20%), Positives = 69/178 (38%), Gaps = 35/178 (19%)

Query: 107 RSQIADLIG------ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ---TEHK 157
           R  IA+ +G        P+EI+ T+GA E+    +  ++    +    V+        ++
Sbjct: 42  REAIAEWLGRRGGVDVPPEEIVVTNGAQEA----LSLLLRALLNPGDEVLVPDPTYPGYE 97

Query: 158 CVLDSCRHLQQEGFEITYLPVGADGI--VNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215
                    +  G E+  +P+  +G   ++L+ L AA  P T L+ +   NN  G +   
Sbjct: 98  ------AAARLAGAEVVPVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSE 151

Query: 216 EE---IGQICKEFKIP---------FHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG 261
           EE   + ++ K+  I             D         +D  +  + L S S  K +G
Sbjct: 152 EELEELAELAKKHGILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFS--KTFG 207

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

>gnl|CDD|99748 cd06502, TA_like, Low-specificity threonine aldolase (TA)

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 24/109 (22%)

Query: 176 LPV-GADGIVNLDELRAAIRPD-------TGLISVMAVNNEIGVIQPMEE---IGQICKE 224
           LPV G +G +  ++L AAIRP          L+S +    E G + P++E   I  + KE
Sbjct: 99  LPVPGENGKLTPEDLEAAIRPRDDIHFPPPSLVS-LENTTEGGTVYPLDELKAISALAKE 157

Query: 225 FKIPFHTD------AAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
             +P H D      AA ALG   V ++ +   + S+S       KG GA
Sbjct: 158 NGLPLHLDGARLANAAAALG---VALKTYKSGVDSVS---FCLSKGGGA 200

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. Length = 338

>gnl|CDD|233915 TIGR02539, SepCysS, O-phospho-L-seryl-tRNA:Cys-tRNA synthase

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE 245
           ++E+         L  +  V+ E G +    ++ ++C+E  +P   + A  +G++PV  +
Sbjct: 136 IEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAK 195

Query: 246 KWNVSLMSLSGHKIYGPKG-VGALYMR 271
           +     +  SGHK     G  G L M 
Sbjct: 196 EIGADFIVGSGHKSMAASGPCGVLGMS 222

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. Length = 370

>gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism]

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 41/182 (22%), Positives = 74/182 (40%), Gaps = 15/182 (8%)

Query: 109 QIADLIGASPKEIIFTSGATESNNVSIKGVMH-FYK-DKKRHVITTQTEHKCVLDSCRHL 166
           ++A LIGA   E++     T++ ++++  V+    +  + R VI ++       D    L
Sbjct: 84  KLAPLIGARAGEVV----VTDTTSINLFKVLAAALRPQEGRRVIVSEG-DNFPTD----L 134

Query: 167 QQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE 224
                    L +G D  G++    L  AI  D  ++ +  VN + G +  M  I  +  +
Sbjct: 135 YIAEGLADLLGIGYDLEGVIAPRALEEAITDDVAVVLLSHVNYKTGQLLDMRAITALAHQ 194

Query: 225 FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY--GPKGVGALYMRRRPRIRVEPLI 282
                  D A + G +PVD+            +K    GP     L++  R R R  P +
Sbjct: 195 HGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPL 254

Query: 283 NG 284
           +G
Sbjct: 255 SG 256

Length = 407

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 42/195 (21%), Positives = 71/195 (36%), Gaps = 35/195 (17%)

Query: 110 IADLIGASPKEI--------IFTSGATESNNVSIKGVMH--FYKDKKRH--------VIT 151
           +A ++G  PKE         +   G++ESN +++         + K             T
Sbjct: 88  LAKMLGL-PKEFLGSGEGGGVLQGGSSESNLLALLAARTKWIRRMKAAGKPSLGKLVAYT 146

Query: 152 TQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD--TGLISVMAVNN-- 207
           +   H  +  +       G E+  +P   +G +   +L  AI  D   GLI         
Sbjct: 147 SDQAHSSIEKAALIA---GVELREIPTDENGKMRGMDLEKAIEEDKENGLIPFFVCATLG 203

Query: 208 --EIGVIQPMEEIGQICKEFKIPFHTDAAQALGK-IPVDVEKW-----NVSLMSLSGHKI 259
               G   P++E+G IC ++ +  H DAA A    I  +   W          S + HK 
Sbjct: 204 TTGSGAFDPLQELGDICNKYDLWLHVDAAYAGSAFICPEFRHWLFGIERADSFSFNPHKW 263

Query: 260 YG-PKGVGALYMRRR 273
                   AL++R +
Sbjct: 264 MLVLLDCSALWVRDK 278

Length = 373

>gnl|CDD|99745 cd06452, SepCysS, Sep-tRNA:Cys-tRNA synthase

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 31/172 (18%)

Query: 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH------LQQEGFEITYL 176
            T GA E        VMH   +K   V         V+D   H       ++ G  +  +
Sbjct: 64  VTPGAREGKFA----VMHSLCEKGDWV---------VVDGLAHYTSYVAAERAGLNVREV 110

Query: 177 PVGA--DGIVNLDELRAAIRPDT-------GLISVMAVNNEIGVIQPMEEIGQICKEFKI 227
           P     +  +  +     I            L  +  V+   G +   ++I ++C E+ +
Sbjct: 111 PNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGV 170

Query: 228 PFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY---GPKGVGALYMRRRPRI 276
           P   + A  +G++PV  ++     +  SGHK      P GV A        +
Sbjct: 171 PLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIV 222

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. Length = 361

>gnl|CDD|184076 PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional

 Score = 41.1 bits (97), Expect = 8e-04
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 3/106 (2%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI--GVIQPMEEIGQICKEFKI 227
           G     L  G D   +  E+ AA+  D  +  V  V+ E   G++ P++EI  + K    
Sbjct: 103 GIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPLDEIAAVAKRHGK 162

Query: 228 PFHTDAAQALGKIPVDVEKWNV-SLMSLSGHKIYGPKGVGALYMRR 272
               DA  + G IP+D+ +  + +L+S +   I G  G G +  RR
Sbjct: 163 RLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARR 208

Length = 368

>gnl|CDD|235654 PRK05957, PRK05957, aspartate aminotransferase; Provisional

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDA 233
           P   +  +  + +  AI P T  I  ++ NN  GV+ P   +  + QIC E  I   +D 
Sbjct: 141 PTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDE 200

Query: 234 AQ---ALGKIP-------VDVEKWNVSLMSLSGHKIYG 261
           A        +               +SL SLS  K YG
Sbjct: 201 AYEYFTYDGVKHFSPGSIPGSGNHTISLYSLS--KAYG 236

Length = 389

>gnl|CDD|99744 cd06451, AGAT_like, Alanine-glyoxylate aminotransferase (AGAT) family

 Score = 40.4 bits (95), Expect = 0.001
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)

Query: 184 VNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV 242
           V+ +E+  A+   D   +++       GV+ P+E IG + K+       DA  +LG  P 
Sbjct: 111 VSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPF 170

Query: 243 DVEKWNVSLMSLSGHKIYG-PKGVG 266
            +++W V +      K  G P G+G
Sbjct: 171 RMDEWGVDVAYTGSQKALGAPPGLG 195

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. Length = 356

>gnl|CDD|223476 COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
           ++ D + AAI P T  I  + +    G    M+ I  + K   +P   DAAQA G
Sbjct: 110 IDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHGLPVIEDAAQAHG 161

Length = 374

>gnl|CDD|224028 COG1103, COG1103, Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 38/178 (21%), Positives = 74/178 (41%), Gaps = 31/178 (17%)

Query: 110 IADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL--- 166
           +A+ +G    E+  T+GA E+       VMH    +   V         V+DS  H    
Sbjct: 70  LAEFLGMD--EVRVTAGAREAKFA----VMHALCKEGDWV---------VVDSLAHYTTY 114

Query: 167 ---QQEGFEITYLP--------VGADGIVN-LDELRAAIRPDTGLISVMAVNNEIGVIQP 214
              ++ G  +  +P        +  +G    ++E++        L  +  V+ E G +  
Sbjct: 115 VAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD 174

Query: 215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG-VGALYMR 271
            +++ +IC+E+ +P   + A  +G++PV  ++     +  SGHK       +G L M 
Sbjct: 175 AKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMS 232

Length = 382

>gnl|CDD|163511 TIGR03799, NOD_PanD_pyr, putative pyridoxal-dependent aspartate 1-decarboxylase

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 8/66 (12%)

Query: 176 LPVGADGIVNLDELRAAIR--PDTGLISVMAV-----NNEIGVIQPMEEIGQICKEFKIP 228
           +   A+  +++D LR       +   I  +A+       E G I P++E+  I +E    
Sbjct: 239 IKTDANNRIDVDALRDKCAELAEQN-IKPLAIVGVAGTTETGNIDPLDEMADIAQELGCH 297

Query: 229 FHTDAA 234
           FH DAA
Sbjct: 298 FHVDAA 303

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent) [Biosynthesis of cofactors, prosthetic groups, and carriers, Pantothenate and coenzyme A]. Length = 522

>gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated

 Score = 39.3 bits (93), Expect = 0.004
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 6/55 (10%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDT-GLISVMAVN-NEIGVIQP-MEEIGQI 221
           GF++  +P   DG+V+L+ L+AA+  DT  L   M  N N +G+ +  + EI +I
Sbjct: 182 GFKVVEIPSNEDGLVDLEALKAAVGEDTAAL---MLTNPNTLGLFERNILEIAEI 233

Length = 481

>gnl|CDD|99740 cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
           ++ + + AAI P T  I  + V+   G    M+ I  I K   +P   DAAQALG
Sbjct: 94  IDPELIEAAITPRTKAI--IPVHLY-GNPADMDAIMAIAKRHGLPVIEDAAQALG 145

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD. Length = 352

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	457
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	100.0
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	100.0
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	100.0
PRK14012	404	cysteine desulfurase; Provisional	100.0
PLN02651	364	cysteine desulfurase	100.0
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	100.0
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	100.0
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	100.0
PRK02948	381	cysteine desulfurase; Provisional	100.0
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	100.0
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	100.0
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	100.0
PRK10874	401	cysteine sulfinate desulfinase; Provisional	100.0
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	100.0
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	100.0
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	100.0
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	100.0
PLN02724	805	Molybdenum cofactor sulfurase	100.0
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	100.0
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	100.0
TIGR01814	406	kynureninase kynureninase. This model describes ky	100.0
PLN02409	401	serine--glyoxylate aminotransaminase	100.0
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	100.0
PRK02769	380	histidine decarboxylase; Provisional	100.0
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	100.0
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	100.0
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	100.0
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	100.0
PLN03032	374	serine decarboxylase; Provisional	100.0
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	100.0
PTZ00094	452	serine hydroxymethyltransferase; Provisional	100.0
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	100.0
PRK03080	378	phosphoserine aminotransferase; Provisional	100.0
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	100.0
PRK13520	371	L-tyrosine decarboxylase; Provisional	100.0
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	100.0
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	100.0
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	100.0
PRK06225	380	aspartate aminotransferase; Provisional	100.0
PLN02483	489	serine palmitoyltransferase	99.98
PRK07179	407	hypothetical protein; Provisional	99.98
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.98
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	99.98
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.97
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.97
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.97
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.97
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.97
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.97
PRK05957	389	aspartate aminotransferase; Provisional	99.97
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.97
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.97
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
PRK08960	387	hypothetical protein; Provisional	99.97
PLN02822	481	serine palmitoyltransferase	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PLN00175	413	aminotransferase family protein; Provisional	99.96
PRK07324	373	transaminase; Validated	99.96
PRK05764	393	aspartate aminotransferase; Provisional	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.96
PRK07682	378	hypothetical protein; Validated	99.96
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.96
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.96
PRK09105	370	putative aminotransferase; Provisional	99.96
PRK07681	399	aspartate aminotransferase; Provisional	99.96
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.96
PRK07568	397	aspartate aminotransferase; Provisional	99.96
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.96
PLN02187	462	rooty/superroot1	99.96
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.96
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.96
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.96
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.96
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.96
PRK06348	384	aspartate aminotransferase; Provisional	99.96
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.96
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.96
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.96
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.96
PRK07337	388	aminotransferase; Validated	99.96
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.96
PRK08912	387	hypothetical protein; Provisional	99.96
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.96
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.96
PRK13393	406	5-aminolevulinate synthase; Provisional	99.96
PLN02656	409	tyrosine transaminase	99.96
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.96
PRK09064	407	5-aminolevulinate synthase; Validated	99.96
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.96
PTZ00433	412	tyrosine aminotransferase; Provisional	99.96
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.96
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.96
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.96
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.96
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.95
PLN02721	353	threonine aldolase	99.95
PRK08363	398	alanine aminotransferase; Validated	99.95
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.95
PRK05942	394	aspartate aminotransferase; Provisional	99.95
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.95
PTZ00377	481	alanine aminotransferase; Provisional	99.95
PRK07683	387	aminotransferase A; Validated	99.95
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.95
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.95
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.95
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.95
PLN02955	476	8-amino-7-oxononanoate synthase	99.95
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.95
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.95
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.95
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.95
PRK07550	386	hypothetical protein; Provisional	99.95
PRK07908	349	hypothetical protein; Provisional	99.95
PRK09082	386	methionine aminotransferase; Validated	99.95
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.95
PRK08068	389	transaminase; Reviewed	99.95
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.95
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.95
PRK09265	404	aminotransferase AlaT; Validated	99.95
PRK06107	402	aspartate aminotransferase; Provisional	99.95
PRK12414	384	putative aminotransferase; Provisional	99.95
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.95
PLN02452	365	phosphoserine transaminase	99.95
PRK06767	386	methionine gamma-lyase; Provisional	99.95
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.95
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.95
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.95
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.95
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.95
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.95
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.95
PRK09148	405	aminotransferase; Validated	99.95
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.95
PLN02263	470	serine decarboxylase	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.95
PRK03321	352	putative aminotransferase; Provisional	99.95
PRK08861	388	cystathionine gamma-synthase; Provisional	99.95
PRK08249	398	cystathionine gamma-synthase; Provisional	99.95
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.95
PRK07777	387	aminotransferase; Validated	99.95
PRK08114	395	cystathionine beta-lyase; Provisional	99.95
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.95
PRK06290	410	aspartate aminotransferase; Provisional	99.95
PRK05968	389	hypothetical protein; Provisional	99.95
PRK06836	394	aspartate aminotransferase; Provisional	99.95
PRK08636	403	aspartate aminotransferase; Provisional	99.95
PLN02242	418	methionine gamma-lyase	99.94
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.94
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.94
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.94
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.94
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.94
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.94
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.94
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.94
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.94
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.94
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.94
PRK09028	394	cystathionine beta-lyase; Provisional	99.94
PRK08064	390	cystathionine beta-lyase; Provisional	99.94
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.94
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.94
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06234	400	methionine gamma-lyase; Provisional	99.94
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.94
PRK06460	376	hypothetical protein; Provisional	99.94
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK08776	405	cystathionine gamma-synthase; Provisional	99.94
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK07503	403	methionine gamma-lyase; Provisional	99.94
PRK08574	385	cystathionine gamma-synthase; Provisional	99.94
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.94
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.94
PRK08175	395	aminotransferase; Validated	99.94
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.94
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.94
PLN02880	490	tyrosine decarboxylase	99.94
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.94
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.94
PRK07811	388	cystathionine gamma-synthase; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.94
PLN02271	586	serine hydroxymethyltransferase	99.93
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.93
PRK06855	433	aminotransferase; Validated	99.93
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.93
PLN02590	539	probable tyrosine decarboxylase	99.93
PRK08045	386	cystathionine gamma-synthase; Provisional	99.93
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.93
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	99.93
PRK05939	397	hypothetical protein; Provisional	99.93
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.93
PRK07050	394	cystathionine beta-lyase; Provisional	99.93
PRK12462	364	phosphoserine aminotransferase; Provisional	99.93
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.93
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.93
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.93
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.93
PRK10534	333	L-threonine aldolase; Provisional	99.93
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.93
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.93
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.93
PRK05839	374	hypothetical protein; Provisional	99.93
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.93
PLN02231	534	alanine transaminase	99.93
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.92
PRK05967	395	cystathionine beta-lyase; Provisional	99.92
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.92
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.92
PRK07671	377	cystathionine beta-lyase; Provisional	99.92
PRK03244	398	argD acetylornithine aminotransferase; Provisional	99.92
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.92
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.92
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.92
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.92
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.92
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.92
PRK05367	954	glycine dehydrogenase; Provisional	99.92
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.92
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.92
PLN02509	464	cystathionine beta-lyase	99.92
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.92
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.92
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.92
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	99.92
PRK07505	402	hypothetical protein; Provisional	99.92
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.92
PLN02672	1082	methionine S-methyltransferase	99.92
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	99.92
PRK04311	464	selenocysteine synthase; Provisional	99.92
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.92
PRK01278	389	argD acetylornithine transaminase protein; Provisi	99.92
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.92
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.91
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.91
PRK07049	427	methionine gamma-lyase; Validated	99.91
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.91
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.91
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.91
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.91
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	99.91
PRK12566	954	glycine dehydrogenase; Provisional	99.91
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.91
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	99.91
PRK08354	311	putative aminotransferase; Provisional	99.9
PRK07582	366	cystathionine gamma-lyase; Validated	99.9
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.9
PTZ00125	400	ornithine aminotransferase-like protein; Provision	99.9
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.9
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.9
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	99.9
PRK05367	954	glycine dehydrogenase; Provisional	99.9
PRK09275	527	aspartate aminotransferase; Provisional	99.9
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.9
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.89
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.89
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.89
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	99.89
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.89
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.89
PTZ00376	404	aspartate aminotransferase; Provisional	99.89
PRK02627	396	acetylornithine aminotransferase; Provisional	99.89
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.88
PRK08637	388	hypothetical protein; Provisional	99.88
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.88
PRK06434	384	cystathionine gamma-lyase; Validated	99.88
PRK03715	395	argD acetylornithine transaminase protein; Provisi	99.88
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	99.88
PRK02936	377	argD acetylornithine aminotransferase; Provisional	99.88
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	99.88
PLN02624	474	ornithine-delta-aminotransferase	99.87
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	99.87
PLN02368	407	alanine transaminase	99.87
PRK04260	375	acetylornithine aminotransferase; Provisional	99.87
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	99.87
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.86
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.86
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	99.86
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.86
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.85
PLN00144	382	acetylornithine transaminase	99.85
PLN02760	504	4-aminobutyrate:pyruvate transaminase	99.85
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	99.85
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.84
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	99.84
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	99.84
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	99.84
PLN02397	423	aspartate transaminase	99.83
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.83
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	99.83
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.83
PRK06541	460	hypothetical protein; Provisional	99.83
PRK06105	460	aminotransferase; Provisional	99.83
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	99.82
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	99.82
PRK13237	460	tyrosine phenol-lyase; Provisional	99.82
PRK06062	451	hypothetical protein; Provisional	99.82
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	99.82
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.82
PRK07678	451	aminotransferase; Validated	99.82
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	99.82
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	99.82
PRK04612	408	argD acetylornithine transaminase protein; Provisi	99.82
PRK15029	755	arginine decarboxylase; Provisional	99.81
PRK05965	459	hypothetical protein; Provisional	99.81
PRK12403	460	putative aminotransferase; Provisional	99.81
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.81
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	99.81
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	99.81
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	99.81
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	99.81
PRK07482	461	hypothetical protein; Provisional	99.81
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	99.81
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	99.81
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	99.81
PRK09792	421	4-aminobutyrate transaminase; Provisional	99.8
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	99.8
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	99.8
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	99.8
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.8
PRK07480	456	putative aminotransferase; Validated	99.8
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	99.79
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	99.79
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.79
PRK13578	720	ornithine decarboxylase; Provisional	99.79
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	99.79
PRK08088	425	4-aminobutyrate aminotransferase; Validated	99.79
PRK07036	466	hypothetical protein; Provisional	99.78
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.78
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	99.78
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.78
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	99.78
PRK07483	443	hypothetical protein; Provisional	99.78
PRK07481	449	hypothetical protein; Provisional	99.78
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	99.77
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	99.77
PRK07046	453	aminotransferase; Validated	99.77
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	99.77
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	99.76
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	99.76
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	99.76
PRK06917	447	hypothetical protein; Provisional	99.76
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	99.75
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	99.75
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	99.75
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	99.74
PRK06149	972	hypothetical protein; Provisional	99.74
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.74
PRK06148	1013	hypothetical protein; Provisional	99.73
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.73
PRK15400	714	lysine decarboxylase CadA; Provisional	99.73
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	99.73
PRK08297	443	L-lysine aminotransferase; Provisional	99.72
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	99.72
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	99.71
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	99.69
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.66
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	99.65
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	99.65
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	99.64
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.64
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	99.6
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	99.6
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.59
KOG0629	510	consensus Glutamate decarboxylase and related prot	99.58
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	99.57
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	99.57
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.56
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	99.56
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	99.52
PRK12566	954	glycine dehydrogenase; Provisional	99.5
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	99.48
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.48
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.44
KOG2790	370	consensus Phosphoserine aminotransferase [Coenzyme	99.43
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	99.42
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.25
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	99.22
COG4100	416	Cystathionine beta-lyase family protein involved i	99.06
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	98.97
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.92
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.87
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	98.38
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	98.12
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.97
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.36
KOG2142	728	consensus Molybdenum cofactor sulfurase [Coenzyme	96.6

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=7e-72  Score=526.29  Aligned_cols=381  Identities=57%  Similarity=0.928  Sum_probs=366.6

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      +||||++.++|+.|+++++|.+++...||||+| .|.+|+...+.++++|+++|+++|+++++|+||+||||++|+++++
T Consensus         2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g   80 (386)
T COG1104           2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKG   80 (386)
T ss_pred             cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHh
Confidence            699999999999999999999999999999999 9999999999999999999999999999999999999999999999


Q ss_pred             hhhhhc--CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          138 VMHFYK--DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       138 ~~~~~~--~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      +...+.  +++.|||++..+|+++.+.+++++..|++|+|++++.+|.+|+++|+++|+++|.+|+++++||++|+++|+
T Consensus        81 ~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI  160 (386)
T COG1104          81 AALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPI  160 (386)
T ss_pred             hHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccH
Confidence            654443  368999999999999999999998889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ++|.++|+++++++|+|++|++|.+|+++..+++|++++|.||++||.|+|++++++  ..++.|.+.||+|+++.|+||
T Consensus       161 ~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~~vD~ls~SaHK~~GpkGiGaLyv~~--~~~~~p~i~GGgQE~g~RsGT  238 (386)
T COG1104         161 AEIGEICKERGILFHVDAVQAVGKIPIDLEELGVDLLSFSAHKFGGPKGIGALYVRP--GVRLEPLIHGGGQERGLRSGT  238 (386)
T ss_pred             HHHHHHHHHcCCeEEEehhhhcCceeccccccCcceEEeehhhccCCCceEEEEECC--CCccCceeccCcCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999964  478899999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEV  373 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i  373 (457)
                      .|+++++++..|++...++++...++...++++|.+.|.+..|++.+.+.+..+.|+++++.|++++++.++..|  +||
T Consensus       239 env~~Ivg~~~A~~~a~~~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~gv~gE~ll~~L~~~gI  318 (386)
T COG1104         239 ENVPGIVGFGKAAEIAVEELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPGVEGESLLLALDLAGI  318 (386)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCCCcHHHHHHhccccCe
Confidence            999999999999999999999999999999999999999845999999988899999999999999999999999  499


Q ss_pred             EecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741          374 AVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       374 ~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~  441 (457)
                      +++.|++|+++.++|++||.++|++++.+++.|||+++.++|+||||++++.+.++++++++++|+|.
T Consensus       319 ~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~~~~  386 (386)
T COG1104         319 AVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSPLWA  386 (386)
T ss_pred             EEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999984

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-65  Score=478.88  Aligned_cols=388  Identities=63%  Similarity=1.023  Sum_probs=367.8

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ..+.+++|||+++++|++++|+++|.+++...++|||++  .|+|...+.++++|+.+|+++|+++++|+||+|+|+|++
T Consensus        39 ~~~~~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~dIiFts~ATEs~N  116 (428)
T KOG1549|consen   39 HHGTRPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSDIVFTSGATESNN  116 (428)
T ss_pred             cCCCccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCcEEEeCCchHHHH
Confidence            456789999999999999999999999999999999997  789999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhcC-CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          133 VSIKGVMHFYKD-KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       133 ~al~~~~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++++++.+++++ .+.+||+.+.+|+|+..+++.++..|++|+++|++.++.+|++.+++.|+++|++|.+++++|++|+
T Consensus       117 lvl~~v~~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv  196 (428)
T KOG1549|consen  117 LVLKGVARFFGDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGV  196 (428)
T ss_pred             HHHHHhhccccccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccc
Confidence            999999987664 3349999999999999999999999999999999988999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEec-CCCccccccccCCccccc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRR-RPRIRVEPLINGGGQERG  290 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~  290 (457)
                      ++|+++|.++|+++++++|+|+||++|..++|+.++++|++++|.||+|||+|+|++|+++ ...-+..|.+.||+++++
T Consensus       197 ~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~eln~D~~s~s~HK~ygp~~iGaLYvr~~~~~~~~~p~~~GGgq~r~  276 (428)
T KOG1549|consen  197 LQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQELNADFLSISAHKIYGPPGIGALYVRRKRPRLRVEPPLSGGGQERG  276 (428)
T ss_pred             cccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHcCchheeeecccccCCCcceEEEEccCCCcccccCcccCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999998 566677899999999999


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL  370 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  370 (457)
                      +++||.+.+...++..|+++....+......+.++...+...+....+++.+.|++...+++++.+.|+.+++..+++.+
T Consensus       277 ~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g~~~~~~~  356 (428)
T KOG1549|consen  277 LRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIKRLSEKLLMGIGQSLPEVTLNGSGKSRYPGLVSLSFPYVEGESLLMDL  356 (428)
T ss_pred             cccCCcCchhhhhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHhhhCchhhccCCcccccccceeeecccccCcchhhhh
Confidence            99999999999999999999988777777777789999988887657889999999899999999999999999999999


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHH
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEM  442 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~  442 (457)
                      +.+.+++|..|.+..++|+|++++.|.+.+..+..|||+++.+++++|++++++.+++.++.+++|+|||+|
T Consensus       357 ~~~~l~s~~a~~~~~~epsy~l~~~G~~~~~~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~~  428 (428)
T KOG1549|consen  357 KDVALSSGSACTSASLEPSYVLRAIGVDEDLAHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWEM  428 (428)
T ss_pred             hhhhhcccchhhcCCCCcchhhhhcCcchhhhcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999987

>TIGR02006 IscS cysteine desulfurase IscS

Probab=100.00  E-value=3.6e-55  Score=437.05  Aligned_cols=399  Identities=64%  Similarity=1.085  Sum_probs=364.1

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++|||+++++++++++++++.+++...+++|+++.+..++...+.++++++.+++++|+++++++|++|+|+++++++.+
T Consensus         4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~   83 (402)
T TIGR02006         4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKG   83 (402)
T ss_pred             cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHH
Confidence            58999999999999999999999987788988766666777778899999999999999888999999999999999888


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +...+.++|++|+++..+|+++..++..++..|+++++++.+.++.+|++++++++++++++|++++++|++|.+.|+++
T Consensus        84 l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~v~~~~n~tG~~~~~~~  163 (402)
T TIGR02006        84 IAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIRDDTILVSIMHVNNEIGVIQDIAA  163 (402)
T ss_pred             HHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECCCcCceecccHHH
Confidence            76433368899999999999999888877777999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP  297 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  297 (457)
                      |.++|+++|+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++...++.+...++++.++++.|+++
T Consensus       164 I~~l~~~~g~~livD~a~a~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~  243 (402)
T TIGR02006       164 IGEICRERKVFFHVDAAQSVGKIPINVNELKVDLMSISGHKIYGPKGIGALYVRRKPRVRLEALIHGGGHERGMRSGTLP  243 (402)
T ss_pred             HHHHHHHcCCEEEEEcchhcCCcccCccccCCCEEEEehhhhcCCCceEEEEEccCCCCCCCceecCCCccCCccCCCcc
Confidence            99999999999999999999999999988899999999999999999999999988777777777777777778899999


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEecc
Q 040741          298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSS  377 (457)
Q Consensus       298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~  377 (457)
                      +..+.++..+++.+.++++.+.++.+++++++.+.|++ ++++.+.++...+.+..+.+.|...+.+.+...++++.++.
T Consensus       244 ~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~v~~~~~~~~~~p~~~~v~f~~~~~~~~~~~l~~i~v~~  322 (402)
T TIGR02006       244 THQIVGMGEAFRIAKEEMAQDTAHVLALRDRLLNGIKS-IEEVYLNGDLEHRVPGNLNVSFNYVEGESLIMALKDLAVSS  322 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEEeCcCHHHHHHhcCCEEEec
Confidence            99999999999998888888999999999999999998 89998887655555666667777777778888889999999


Q ss_pred             cCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCccccccccC
Q 040741          378 GSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH  457 (457)
Q Consensus       378 g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  457 (457)
                      |.+|++...+|+++++++|+.+...++.||++++.++|+||||++++.|++++++++.++|.|+|..+|.|+..++|..|
T Consensus       323 G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (402)
T TIGR02006       323 GSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRELSPLWEMFKEGVDLNSIEWAAH  402 (402)
T ss_pred             hhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcchhhhccccCCccccCCCCC
Confidence            99999999999999999999888888999999999999999999999999999999999999999999999999999876

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>PRK14012 cysteine desulfurase; Provisional

Probab=100.00  E-value=2.5e-52  Score=417.06  Aligned_cols=399  Identities=63%  Similarity=1.073  Sum_probs=356.2

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      .+|||+++++++++++++++.+++.  ..+++|+++.+..++...+.++++|+.+++++|+++++++|++|+|+|+++++
T Consensus         4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l   83 (404)
T PRK14012          4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAI   83 (404)
T ss_pred             eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHH
Confidence            4899999999999999999999987  66788887666667777788999999999999998888999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      .++...+.++|++|+++..+|+++..+++.++..|+++++++.+.++.+|+++++++|++++++|++++++|++|.+.|+
T Consensus        84 ~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~  163 (404)
T PRK14012         84 KGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMRDDTILVSIMHVNNEIGVIQDI  163 (404)
T ss_pred             HHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcCCCCEEEEEECcCCCccchhhH
Confidence            88764333789999999999999988887777779999999998889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ++|.++|+++|+++|+|++|++|..++++...++|++++|+||++||.|+|+++++++...++.+...|++..++++.|+
T Consensus       164 ~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt  243 (404)
T PRK14012        164 AAIGEICRERGIIFHVDAAQSVGKVPIDLSKLKVDLMSFSAHKIYGPKGIGALYVRRKPRVRLEAQMHGGGHERGMRSGT  243 (404)
T ss_pred             HHHHHHHHHcCCEEEEEcchhcCCcccCcccCCCCEEEEehhhccCCCceEEEEEecCCCCCCCceecCCCccCCccCCC
Confidence            99999999999999999999999999888888899999999999999899999999887667777666766666678889


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAV  375 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  375 (457)
                      ++...+.++.++++....++....++.+++++++.+.|++ ++++.+.++.....+....+.|...+..++...|+++.+
T Consensus       244 ~~~~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i  322 (404)
T PRK14012        244 LPTHQIVGMGEAARIAKEEMATENERIRALRDRLWNGIKD-IEEVYLNGDLEQRVPGNLNVSFNYVEGESLIMALKDLAV  322 (404)
T ss_pred             cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCEEEEEEeCcCHHHHHHhCCCeEE
Confidence            9999999999999888777788889999999999999999 899988765433445555566665556778888899999


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCccccccc
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWA  455 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (457)
                      .+|.+|.+...+|.+.+..+|+.+....+.||++++.++|++|+|+++++|+++++.++.++|+|+|..+|.|+..|+|.
T Consensus       323 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
T PRK14012        323 SSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSPLWEMFKEGVDLNSIEWA  402 (404)
T ss_pred             EchhhhCCCCCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhccchhhccccCCCCccCCC
Confidence            99999999999999999999988888889999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 040741          456 QH  457 (457)
Q Consensus       456 ~~  457 (457)
                      .|
T Consensus       403 ~~  404 (404)
T PRK14012        403 HH  404 (404)
T ss_pred             CC
Confidence            76

>PLN02651 cysteine desulfurase

Probab=100.00  E-value=9.3e-51  Score=400.36  Aligned_cols=362  Identities=80%  Similarity=1.257  Sum_probs=329.8

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      +|||+++++++++++++++.+++...++||+++.+.+++.+.+.++++++.+++++|+++++++|++|+|+++++++.++
T Consensus         1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~   80 (364)
T PLN02651          1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGV   80 (364)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHH
Confidence            69999999999999999999999888899887667667777889999999999999998889999999999999998887


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                      ...+.++|++|+++..+|+++...+..+...|++++.++.+.++.+|+++++++|+++++++++++++|++|.+.|+++|
T Consensus        81 ~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~v~~~~n~tG~~~~l~~I  160 (364)
T PLN02651         81 MHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIRPDTALVSVMAVNNEIGVIQPVEEI  160 (364)
T ss_pred             HHhccCCCCEEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEECCCCCceecccHHHH
Confidence            54333678999999999999988887777779999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCCh
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT  298 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  298 (457)
                      .++||++|+++++|++|++|..++++.++++|++++|+||++||.|+|+++++++...++.+...|++++.+++.||++.
T Consensus       161 ~~~~~~~g~~~~vD~a~~~g~~~~~~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~  240 (364)
T PLN02651        161 GELCREKKVLFHTDAAQAVGKIPVDVDDLGVDLMSISGHKIYGPKGVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENT  240 (364)
T ss_pred             HHHHHHcCCEEEEEcchhhCCcccCcccCCCCEEEechhhhCCCCceEEEEEcCCCCCCCCccccCCCccCCccCCCccH
Confidence            99999999999999999999999999999999999999999999999999999998888888888888777889999999


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC--CCcccceEEEEEccccchHHHhcccCeEec
Q 040741          299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM--ERRYIGNLNLSFAYVEGESLLMGLKEVAVS  376 (457)
Q Consensus       299 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~  376 (457)
                      +.+.++.++++++.++.+++.++.+++.+++.+.|.+.+++++++++.  ..+.++++.|.+++.+++++...|.+|.++
T Consensus       241 ~~~~~l~~al~~~~~~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~L~~i~v~  320 (364)
T PLN02651        241 PLVVGLGAACELAMKEMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAYVEGESLLMGLKEVAVS  320 (364)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCCCCHHHHHHHhCCEEEE
Confidence            999999999999988788999999999999999998536899999863  334577888999888888998888779999


Q ss_pred             ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       377 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      .|.+|++...+++.+++++|..+....+.+|+|++.++|++|||
T Consensus       321 ~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        321 SGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             chhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence            99999999999999999999887667799999999999999986

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-49  Score=389.94  Aligned_cols=364  Identities=30%  Similarity=0.504  Sum_probs=330.9

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~  133 (457)
                      ..+.+|||++++++.|..|++++.+++...++|++++.|..+....+.++++|+.+++++|+++ ++|+||.|+|+|+++
T Consensus        20 ~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~   99 (405)
T COG0520          20 GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNL   99 (405)
T ss_pred             CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHH
Confidence            4567999999999999999999999999999999998888888888999999999999999995 889999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHH-hcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~-~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      +..++.... ++||+||++..+|+++...++.+. +.|++++++|.+++|.+|+++++..++++|++|.+++++|.+|.+
T Consensus       100 va~~l~~~~-~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~  178 (405)
T COG0520         100 VARGLGRSL-KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTV  178 (405)
T ss_pred             HHHHhhhhh-cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEEecCCCCCcCHHHHHHhcCCCceEEEEECcccccccc
Confidence            999985321 788999999999999999998775 459999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc----
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ----  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~----  287 (457)
                      .|+++|+++||++|+++++|++|++|..++|+.++++|++++|+|| ++||.|+|+++++++.++.+.|...|++.    
T Consensus       179 ~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~  258 (405)
T COG0520         179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYV  258 (405)
T ss_pred             chHHHHHHHHHHcCCEEEEECccccCccCCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeee
Confidence            9999999999999999999999999999999999999999999999 89999999999999999999887776543    


Q ss_pred             -----------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          288 -----------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       288 -----------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                                 ..++..||++.....++.+|+++.++ +++++.++.+++.+++.+.|.+ +|++++++++.....+.+.
T Consensus       259 ~~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~-~~~v~i~g~~~~~r~~~vs  337 (405)
T COG0520         259 SRDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSE-LPGVEIYGPPDADRGGIVS  337 (405)
T ss_pred             cccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCcccCceEEE
Confidence                       13567899999999999999999887 6899999999999999999999 9999999976545577888


Q ss_pred             EEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          356 LSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       356 ~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      |.+.+....++...|  +||+++.|.+|..+      +++-++++     ..+|+|++.|+|+||||+++++|+++.+
T Consensus       338 F~v~~~~~~dv~~~L~~~gI~vr~g~~ca~p------~~~~~~~~-----~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         338 FNVKGIHPHDVATLLDEKGIAVRAGHHCAQP------LHRLLGVD-----ATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             EEeCCCCHHHHHHHHHhCCeEEEeccccccH------HHHhcCCC-----CceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            888988888988888  78999999999863      46666766     4599999999999999999999998765

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=100.00  E-value=4.1e-49  Score=391.16  Aligned_cols=376  Identities=52%  Similarity=0.857  Sum_probs=333.5

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      +|||+++++++++++++++.+++...++||++ .+..+..+.+.++++++.+++++|+++++++||+|+|+++++++.++
T Consensus         1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~   79 (379)
T TIGR03402         1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSS-MHSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSA   79 (379)
T ss_pred             CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHH
Confidence            59999999999999999999999877888885 45556666788999999999999999889999999999999999887


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                      .... .++++|+++..+|+++...+..++..|.+++.++.+.+|.+|+++++++++++++++++++++|++|.+.|+++|
T Consensus        80 ~~~~-~~~~~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~~~I  158 (379)
T TIGR03402        80 LAAQ-PEKRHIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAITDDTALVSVMWANNETGTIFPIEEI  158 (379)
T ss_pred             HHhc-CCCCeEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcCCCcEEEEEEcccCCeeecccHHHH
Confidence            5221 346899999999999988887777789999999988888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCCh
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT  298 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  298 (457)
                      .++|+++|+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++.  .+.|...++.+..+.+.|++++
T Consensus       159 ~~l~~~~g~~vivD~~~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~  236 (379)
T TIGR03402       159 GEIAKERGALFHTDAVQAVGKIPIDLKEMNIDMLSLSGHKLHGPKGVGALYIRKGT--RFRPLLRGGHQERGRRAGTENV  236 (379)
T ss_pred             HHHHHHcCCEEEEECcccccccccCcccCCCCEEEEcHHHcCCCCceEEEEECCCC--CCCCcccCCccCCCcCCCCccH
Confidence            99999999999999999999999999989999999999999999999999998764  3566666666666678899999


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEec
Q 040741          299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVS  376 (457)
Q Consensus       299 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~  376 (457)
                      +.+.++.+++++..+.++++.++.+++.+++++.|.+.++++.+.+++..+.++.+.+.++..++.++...|  +||.++
T Consensus       237 ~~~~~l~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gI~v~  316 (379)
T TIGR03402       237 PGIVGLGKAAELATEHLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYIEGEAILLLLDMEGICAS  316 (379)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCCCHHHHHHhhccCCEEEE
Confidence            999999999999988888888999999999999998437899998865545567888888888888888777  699999


Q ss_pred             ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcCh
Q 040741          377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSP  438 (457)
Q Consensus       377 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~  438 (457)
                      +|.+|++...+++.+++++|.......+.||++++.++|++|||++++.|+++++++++++|
T Consensus       317 ~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~~~~  378 (379)
T TIGR03402       317 SGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRAMSP  378 (379)
T ss_pred             chhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhcC
Confidence            99999999999999999999877667789999999999999999999999999998877543

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=100.00  E-value=2.5e-48  Score=385.85  Aligned_cols=374  Identities=46%  Similarity=0.725  Sum_probs=330.2

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al~~  137 (457)
                      +|||++++++++++|++++.+++...++||++ .+.++....+.+.+.++.+++.+|+ ++++++||+|+|+++++++.+
T Consensus         1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~   79 (382)
T TIGR03403         1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNS-LHQFGTATHPAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKG   79 (382)
T ss_pred             CcccCcCCCCCCHHHHHHHHHHHHhcCcCCcc-ccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHH
Confidence            59999999999999999999999988999985 6667766667788888888888887 678899999999999999987


Q ss_pred             hhh-hh-cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          138 VMH-FY-KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       138 ~~~-~~-~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      +.. .+ +..+++|+++..+|+++...+..++..|++++.++.+.++.+|+++++++++++++++++++++|++|.+.|+
T Consensus        80 ~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~~~t~lv~~~~~~n~tG~~~~~  159 (382)
T TIGR03403        80 VYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAITEKTALVSVMWANNETGMIFPI  159 (382)
T ss_pred             HHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcccCCeEEEEEcccCCCccccCH
Confidence            642 11 1335789999999999999888777789999999998888999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ++|.++|+++|+++++|++++.|..++++.++++|++++|+||++||+|+|+++++++.  .+.+...|+++..+.+.|+
T Consensus       160 ~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt  237 (382)
T TIGR03403       160 KEIGEICKERGVLFHTDAVQAIGKIPVDVQKAGVDFLSFSAHKFHGPKGVGGLYIRKGV--ELTPLFHGGEHMGGRRSGT  237 (382)
T ss_pred             HHHHHHHHHcCCEEEEechhhcCCCccCccccCCCEEEEcchhhCCCCceEEEEECCCC--CCCCcccCCCCCCCcccCC
Confidence            99999999999999999999999999988888999999999999999999999998764  3456555555566678899


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEV  373 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i  373 (457)
                      ++.+.++++..+++...+.++...++.+++++++.+.|.+ ++++.++++.+.+.++++.+.+++++++.+...|  +||
T Consensus       238 ~~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI  316 (382)
T TIGR03403       238 LNVPYIVAMGEAMRLANEYLDFEKSHVRRLRDRLEDALLE-LPDVFVVGDREHRVPNTILISIKGVEGEAMLWDLNKAGI  316 (382)
T ss_pred             cChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc-CCCEEEECCCCCCcCCEEEEEeCCCCHHHHHHhhccCCE
Confidence            9999999999999988777888889999999999999999 8999999865555577778888877788777766  799


Q ss_pred             EecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          374 AVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       374 ~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      .++.|++|++..+++++++.++|..++..++.||++++.++|++|||+++++|++++++++..
T Consensus       317 ~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~~~  379 (382)
T TIGR03403       317 AASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLRAI  379 (382)
T ss_pred             EEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999998766667899999999999999999999999999988764

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK02948 cysteine desulfurase; Provisional

Probab=100.00  E-value=1.7e-46  Score=372.70  Aligned_cols=372  Identities=34%  Similarity=0.568  Sum_probs=320.5

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++|||+++++++++++++++.++++..++||++ .+..+....+.++++++.+++++|+++++++|++|+|+++++++.+
T Consensus         1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~   79 (381)
T PRK02948          1 MIYLDYAATTPMSKEALQTYQKAASQYFGNESS-LHDIGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQS   79 (381)
T ss_pred             CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHH
Confidence            489999999999999999999999888888875 5667777778999999999999999888999999999999999988


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +...+.++++.|+++..+|+++...++.++..|.+++.++.+.++.+|++++++++++++++|++++++|++|.+.|+++
T Consensus        80 ~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~  159 (381)
T PRK02948         80 LLNALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAITPDTVLASIQHANSEIGTIQPIAE  159 (381)
T ss_pred             HHHhccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcCCCCEEEEEECCcCCcEeehhHHH
Confidence            86432357899999999999999988888888999999999888899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP  297 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  297 (457)
                      |.++|+++|+++++|+++++|..++++..+++|++++|+||++||.|+|+++++++.  .+.+...++.+..++..++++
T Consensus       160 I~~l~~~~~~~vivD~~~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~t~~  237 (381)
T PRK02948        160 IGALLKKYNVLFHSDCVQTFGKLPIDVFEMGIDSLSVSAHKIYGPKGVGAVYINPQV--RWKPVFPGTTHEKGFRPGTVN  237 (381)
T ss_pred             HHHHHHHcCCEEEEEChhhccccccCcccCCCCEEEecHHhcCCCCcEEEEEEcCCC--CCCCcccCCCCCCCcCCCCcc
Confidence            999999999999999999999999888888999999999999999999999998764  222333334445567889999


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeE
Q 040741          298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD-GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVA  374 (457)
Q Consensus       298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~  374 (457)
                      .+.+.++.++++...+++++..++.+++++++.+.|++ ++ .+...+......+.++.+.+++.+..++...|  +||.
T Consensus       238 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~gI~  316 (381)
T PRK02948        238 VPGIAAFLTAAENILKNMQEESLRFKELRSYFLEQIQT-LPLPIEVEGHSTSCLPHIIGVTIKGIEGQYTMLECNRRGIA  316 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCEEEeCCCccCcCCEEEEEeCCCCHHHHHHhcccCCEE
Confidence            99999999999988777889999999999999999998 53 13323223334455666777766667666666  7999


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ++.|..|+++..+|+++++++|...+..++.|||+++.++|++|+|++++.|++.++++
T Consensus       317 v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~  375 (381)
T PRK02948        317 ISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGNQF  375 (381)
T ss_pred             EEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998554556899999999999999999999999987654

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=100.00  E-value=4.6e-46  Score=372.32  Aligned_cols=362  Identities=25%  Similarity=0.374  Sum_probs=311.9

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+|||+++++++++++++++.+++...++|++++.+..+....+..+++|+.+++++|+ ++++++||+|+|++++++
T Consensus        22 ~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~  101 (406)
T PRK09295         22 LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLV  101 (406)
T ss_pred             CceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHH
Confidence            3579999999999999999999999988788887767766777778999999999999998 577899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      +.++.....++|++|+++..+|++.......+ +..|++++.++.+.++.+|+++++++++++|++|++++++|++|.+.
T Consensus       102 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~l~~~~n~tG~~~  181 (406)
T PRK09295        102 ANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFDERTRLLAITHVSNVLGTEN  181 (406)
T ss_pred             HHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCCCHHHHHHhcCCCcEEEEEecchhcccccC
Confidence            88753211278999999999999887665543 56799999999988888999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc------
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ------  287 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~------  287 (457)
                      |+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++.+.+...|++.      
T Consensus       182 ~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~  261 (406)
T PRK09295        182 PLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSL  261 (406)
T ss_pred             CHHHHHHHHHHcCCEEEEEcccccCccccCchhcCCCEEEeehhhccCCCCcEEEEEchHhHhhCCCcccCCceeeeeec
Confidence            99999999999999999999999999999988889999999999999999999999999877777665444322      


Q ss_pred             ---------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          288 ---------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       288 ---------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                               ..+++.||++...++++.+|++++.+ +++++.++.+++++++.+.|.+ +++++++++.  ...+++.+.
T Consensus       262 ~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~--~~~~iv~~~  338 (406)
T PRK09295        262 TEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ--NRLGVIAFN  338 (406)
T ss_pred             CCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCC--CCceEEEEE
Confidence                     13567899999999999999999887 6889999999999999999999 8999998753  235677788


Q ss_pred             EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +++.+++++...|  +||.++.|..|..      .++..+|..     +.||+|++.++|++|||+++++|++..+
T Consensus       339 ~~~~~~~~~~~~L~~~gI~v~~g~~c~~------~~~~~~~~~-----~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        339 LGKHHAYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNVP-----AMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             ECCcCHHHHHHHHHhCCeEEeccccchH------HHHHHHCCC-----CEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            7776667776666  6999999999974      355666654     6899999999999999999999988754

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=100.00  E-value=1.1e-45  Score=371.61  Aligned_cols=370  Identities=26%  Similarity=0.369  Sum_probs=318.3

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+|||++++++.|+.+++++.+++....++++++.+..+....+.++++++.+++++|++ +++++||+|+|++++++
T Consensus        31 ~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i  110 (424)
T PLN02855         31 SKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLV  110 (424)
T ss_pred             CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHH
Confidence            45799999999999999999999999887788776566555566678899999999999995 57899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      +.++....-++|++|+++.++|++....++.+ +..|.+++.++.+.++.+|++++++++++++++|++++++|++|.+.
T Consensus       111 ~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~~  190 (424)
T PLN02855        111 AYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLTPDEVLDVEQLKELLSEKTKLVATHHVSNVLGSIL  190 (424)
T ss_pred             HHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHHhccCceEEEEeCccccccccC
Confidence            88642111178999999999999887666543 56699999999987777999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc------
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ------  287 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~------  287 (457)
                      |+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++++.+...|+..      
T Consensus       191 ~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~  270 (424)
T PLN02855        191 PVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTLGADFLVASSHKMCGPTGIGFLWGKSDLLESMPPFLGGGEMISDVFL  270 (424)
T ss_pred             CHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhcCCCEEEeecccccCCCccEEEEEchhhhhcCCCEecCCCceeeeec
Confidence            99999999999999999999999999999988889999999999999999999999999888888776654432      


Q ss_pred             --------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---CcccceEE
Q 040741          288 --------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---RRYIGNLN  355 (457)
Q Consensus       288 --------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~  355 (457)
                              ..+++.||+++..++++.++++++.+ +++++.++..++++++++.|.+ +++++++++.+   ....+++.
T Consensus       271 ~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~-~~g~~i~~~~~~~~~~r~~~v~  349 (424)
T PLN02855        271 DHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSS-VPGVRIYGPKPSEGVGRAALCA  349 (424)
T ss_pred             CccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCcccccCcccEEE
Confidence                    34577899999999999999998876 7899999999999999999999 89999997643   23467888


Q ss_pred             EEEccccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          356 LSFAYVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       356 ~~~~~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.+++.+..++...|  + ||.++.|.+|..      ..++.+|..     +.||++++.++|++|||+++++|+++++.
T Consensus       350 ~~~~~~~~~~v~~~L~~~~gI~v~~g~~c~~------~~~~~~g~~-----~~iRiS~~~ynt~~di~~l~~~l~~~~~~  418 (424)
T PLN02855        350 FNVEGIHPTDLSTFLDQQHGVAIRSGHHCAQ------PLHRYLGVN-----ASARASLYFYNTKEEVDAFIHALKDTIAF  418 (424)
T ss_pred             EEECCcCHHHHHHHhcccCCEEEechhhhhH------HHHHHhCCC-----CeEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence            888877777788777  4 999999999974      234666665     68999999999999999999999999988


Q ss_pred             HHhcC
Q 040741          433 LREMS  437 (457)
Q Consensus       433 ~~~~~  437 (457)
                      +++|.
T Consensus       419 ~~~~~  423 (424)
T PLN02855        419 FSSFK  423 (424)
T ss_pred             HHhhc
Confidence            87663

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=100.00  E-value=1.6e-45  Score=367.64  Aligned_cols=364  Identities=25%  Similarity=0.369  Sum_probs=309.8

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~  133 (457)
                      ..+.+|||+++++++|+.+++++.+++....++|+...+..+....+.++++|+.+++++|++ +++++||+|+|+++++
T Consensus        14 ~~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~   93 (398)
T TIGR03392        14 QDGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINL   93 (398)
T ss_pred             CCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHH
Confidence            346899999999999999999999999877788877666666677788999999999999995 7889999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++.++.....++|++|++++++|++...... .++..|++++.++.+.++.+|+++++++++++|++|++++++|++|.+
T Consensus        94 ~~~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~i~~~t~lv~i~~~~n~tG~~  173 (398)
T TIGR03392        94 VAQSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGAKVVKLPIGADLLPDIRQLPELLTPRTRILALGQMSNVTGGC  173 (398)
T ss_pred             HHHHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHHhccCceEEEEECcccccccc
Confidence            9998731101689999999999998755443 346679999999998778899999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-----
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ-----  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-----  287 (457)
                      .|+++|.++|+++|+++++|++|+.+..++++..+++|++++|+||++||.|+|+++++++.++++.+...++..     
T Consensus       174 ~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  253 (398)
T TIGR03392       174 PDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQALDIDFYAFSGHKLYGPTGIGVLYGKTELLEAMPPWQGGGKMLSHVS  253 (398)
T ss_pred             CCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhcCCCEEEEecccccCCCceEEEEEcHHHHhhCCCeecCCceEeecc
Confidence            999999999999999999999999998888888788999999999999999999999998877777665433221     


Q ss_pred             ---------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          288 ---------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       288 ---------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                               ..+++.||++...++++.++++++.+ +++++.++..++++++.+.|.+ ++++.+++.+.   ..++.+.
T Consensus       254 ~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~-l~g~~~~~~~~---~~i~~~~  329 (398)
T TIGR03392       254 FDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ-LPGFRSFRCPG---SSLLAFD  329 (398)
T ss_pred             ccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCC---CcEEEEE
Confidence                     14567899999999999999998765 5778889999999999999999 88998876542   4566667


Q ss_pred             EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +++.+.+++...|  +||.+++|..|+.      .++..+|..     +.||++++.++|++|||+++++|+++++++
T Consensus       330 ~~~~~~~~l~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRvS~~~~~t~~ei~~l~~~l~~~~~~~  396 (398)
T TIGR03392       330 FAGVHHSDLAALLAESGIALRAGQHCAQ------PLMAALGVS-----GTLRASFAPYNTQQDVDALVDAVGAALELL  396 (398)
T ss_pred             eCCcCHHHHHHHHHhCCEEEecCccchH------HHHHHhCCC-----CEEEEEeeccCCHHHHHHHHHHHHHHHHHh
Confidence            7766667777776  7999999998874      355566654     799999999999999999999999988764

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=100.00  E-value=3.2e-45  Score=365.93  Aligned_cols=364  Identities=26%  Similarity=0.383  Sum_probs=310.9

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~  133 (457)
                      ..+.+|||++++++.|+.+++++.+++...+++++++.+..+..+.+.++++++.+++++|+ ++++|+|++|+|+++++
T Consensus        17 ~~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~   96 (401)
T PRK10874         17 QDAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINL   96 (401)
T ss_pred             CCceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHH
Confidence            34689999999999999999999999988888888767777777888999999999999999 68899999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++.++.....++|++|++++++|++....+. .++..|.++++++.+.++.+|+++++++++++|++|++++++|++|.+
T Consensus        97 ~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~~~t~lv~i~~~~n~tG~~  176 (401)
T PRK10874         97 VAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELITPRTRILALGQMSNVTGGC  176 (401)
T ss_pred             HHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEEecCCCCcCCHHHHHHhcCcCcEEEEEeCCcccccCc
Confidence            9998741111689999999999999765544 346669999999998888899999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc------
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG------  286 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~------  286 (457)
                      .|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++++.+...++.      
T Consensus       177 ~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  256 (401)
T PRK10874        177 PDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYAFSGHKLYGPTGIGVLYGKSELLEAMSPWQGGGKMLTEVS  256 (401)
T ss_pred             CCHHHHHHHHHHcCCEEEEECCcccccccCCchhcCCCEEEEecccccCCCccEEEEEchHHHhcCCCeecCCcceEeec
Confidence            99999999999999999999999999888888888899999999999999999999999988777766553321      


Q ss_pred             --------cccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          287 --------QERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       287 --------~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                              ...+++.||+++..+.++.+|++.+.+ +..+..++.+++++++.+.|++ ++++.++.++.   .+++.+.
T Consensus       257 ~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~---~~i~~~~  332 (401)
T PRK10874        257 FDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAK-LPGFRSFRCQD---SSLLAFD  332 (401)
T ss_pred             cCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCC---CcEEEEE
Confidence                    123567789999999999999998765 5778889999999999999998 88998876543   4566667


Q ss_pred             EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +++.+..++...|  +||.+.+|..|+.      .++..+|..     +.||++++.++|++|||+++++|+++++.+
T Consensus       333 ~~~~~~~~~~~~L~~~gI~v~~g~~~~~------~~~~~~g~~-----~~iRiS~~~~nt~edid~ll~al~~~~~~~  399 (401)
T PRK10874        333 FAGVHHSDLVTLLAEYGIALRAGQHCAQ------PLLAALGVT-----GTLRASFAPYNTQSDVDALVNAVDRALELL  399 (401)
T ss_pred             ECCcCHHHHHHHHHHCCcEEeccccchH------HHHHHhCCC-----CEEEEEecccCCHHHHHHHHHHHHHHHHHh
Confidence            7766667776666  7999999988864      355566654     799999999999999999999999988765

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=100.00  E-value=1.2e-44  Score=355.76  Aligned_cols=349  Identities=49%  Similarity=0.798  Sum_probs=310.0

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      |||+++.+++++++++++.+++...+++|+++.+.++....+.++++++.+++++|+++++++|++|+|+++++++.++.
T Consensus         1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~   80 (353)
T TIGR03235         1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLA   80 (353)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHH
Confidence            89999999999999999999997777888876666666666789999999999999998899999999999999998876


Q ss_pred             hhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          140 HFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       140 ~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                      .....+| ++|+++..+|+++......++..|++++.++.+.++.+|++++++++++++++|++++++|++|.+.|+++|
T Consensus        81 ~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~~~~~lv~~~~~~n~tG~~~~~~~I  160 (353)
T TIGR03235        81 RAGEQKGKKHIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIRPDTLLVSIMHVNNETGSIQPIREI  160 (353)
T ss_pred             HhcccCCCCeeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCCCCCEEEEEEcccCCceeccCHHHH
Confidence            3211344 889999999999999888777789999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCc--cccccccCCccccccccCCC
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRI--RVEPLINGGGQERGIRSGTL  296 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~--~~~~~~~~~~~~~~~~~~t~  296 (457)
                      .++|+++|+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++...  ++.+...++++.+++..|++
T Consensus       161 ~~l~~~~~~~~ivD~a~~~g~~~~~~~~~~~D~~~~s~~K~~gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~  240 (353)
T TIGR03235       161 AEVLEAHEAFFHVDAAQVVGKITVDLSADRIDLISCSGHKIYGPKGIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTL  240 (353)
T ss_pred             HHHHHHcCCEEEEEchhhcCCccccccccCCCEEEeehhhcCCCCceEEEEEccCcccccccCceeeCCCCcCccccCCC
Confidence            9999999999999999999999999988899999999999999999999999987543  35666666666677889999


Q ss_pred             ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc-cCeEe
Q 040741          297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL-KEVAV  375 (457)
Q Consensus       297 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~i~~  375 (457)
                      +++.++++.+++++..++++++.++++++.+++++.|.+  +++++++++....+.++.+.+++.+.+++...| ++|.+
T Consensus       241 ~~~~~~al~~al~~~~~~~~~~~~~~~~l~~~l~~~l~~--~g~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~L~~~i~v  318 (353)
T TIGR03235       241 PVHLIVGMGEAAEIARRNAQAWEVKLRAMRNQLRDALQT--LGVKLNGDPAETIPHILNFSIDGVNSEALIVNLRADAAV  318 (353)
T ss_pred             ChHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc--CCeEEeCCcccccCCEEEEEeCCcCHHHHHHHHhCCeEE
Confidence            999999999999998878899999999999999999988  799988766556677788888877777887777 58999


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      .+|..|.++..+|++++.++|.+++..++.+||++
T Consensus       319 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~~r~s~  353 (353)
T TIGR03235       319 STGSACSSSKYEPSHVLQAMGLDTDRARGAIRFSW  353 (353)
T ss_pred             EchhhcCCCCCCCCHHHHHcCCCHHHhCccEEEeC
Confidence            99999999999999999999999888889999985

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=100.00  E-value=1.6e-44  Score=357.17  Aligned_cols=351  Identities=32%  Similarity=0.541  Sum_probs=305.2

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~~  137 (457)
                      ||||+++++++|+.|++++.+++...++||++..+..+..+.+.++++++.+++++|+++ ++++|++|+|.+++.++.+
T Consensus         1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~   80 (371)
T PF00266_consen    1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASS   80 (371)
T ss_dssp             EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHH
T ss_pred             CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhc
Confidence            799999999999999999999999999999777777777888999999999999999998 7899999999999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~  216 (457)
                      +.... +++++|++...+|++...++..+ +..|+++++++.+.++.+|+++++++|++++++|+++++++.+|.+.|++
T Consensus        81 l~~~~-~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~  159 (371)
T PF00266_consen   81 LLNPL-KPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIE  159 (371)
T ss_dssp             HHHHG-TTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHH
T ss_pred             ccccc-ccccccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhccccceEEeecccccccEEeeec
Confidence            93211 78999999999999999877765 47799999999988899999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc---------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ---------  287 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~---------  287 (457)
                      +|.++||++|+++++|++|++|..++++.++++|++++|+||++||+|+|+++++++..+++++...+++.         
T Consensus       160 ~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~~~D~~~~s~~Kl~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~  239 (371)
T PF00266_consen  160 EIAKLAHEYGALLVVDAAQSAGCVPIDLDELGADFLVFSSHKLGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEY  239 (371)
T ss_dssp             HHHHHHHHTTSEEEEE-TTTTTTSS--TTTTTESEEEEESTSTTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHH
T ss_pred             eehhhhhccCCceeEechhccccccccccccccceeeecccccCCCCchhhheehhhhhhccccccccccccccccchhc
Confidence            99999999999999999999999999999999999999999988999999999999988888777766651         


Q ss_pred             -----ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceEEEEEcc
Q 040741          288 -----ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNLNLSFAY  360 (457)
Q Consensus       288 -----~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~  360 (457)
                           ..++..||+++..++++..+++.+.+ +++++.++..++.+++.+.|.+ ++++.+++ +...+.++++.+.+++
T Consensus       240 ~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~i~~~~~~~  318 (371)
T PF00266_consen  240 GLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEE-LPGIEVLGPDDEPRRPSIVSFNLPG  318 (371)
T ss_dssp             CHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTEEESSSSCGGBGTTEEEEEETT
T ss_pred             ccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhc-CCceeEeeecccccccceEEEeecC
Confidence                 12356789999999999999999855 6999999999999999999999 99999987 4566778899999988


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                      .+...+...|  ++|.+..|..|..    |  .+..+++.     +.||++++.++|+||||++
T Consensus       319 ~~~~~~~~~L~~~~I~~~~G~~~~~----~--~~~~~~~~-----~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  319 SDADDVVKYLEERGIAVSTGSACAG----P--SLDILGMG-----GVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             SSHHHHHHHHHHHTEEEEESTTTCH----H--HHHHHHTT-----TEEEEE-GTTSSHHHHHHH
T ss_pred             CCHHHHHHHHhhcCEEEeccCcccH----H--HHHHhCCC-----CEEEEeccCCCCHHHHhhC
Confidence            8888888887  6999999988872    2  23333333     8999999999999999986

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=100.00  E-value=1.7e-43  Score=353.85  Aligned_cols=367  Identities=26%  Similarity=0.442  Sum_probs=309.7

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~  133 (457)
                      +.+.+|||+++.+++|+.+.+++.++++..+++|+++.+..+..+.+..+++++.+++++|++ +++++|++|+|+++++
T Consensus        16 ~~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~   95 (403)
T TIGR01979        16 GKPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINL   95 (403)
T ss_pred             CCceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHH
Confidence            446799999999999999999999999888888887666666666778999999999999998 6789999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++.++.....++|++|++++++|++....++.+ ...|.+++.++.+.++.+|++++++++++++++|++++++|++|.+
T Consensus        96 ~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~lv~~~~~~~~tG~~  175 (403)
T TIGR01979        96 VAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDDLEKLLTEKTKLVAITHVSNVLGTV  175 (403)
T ss_pred             HHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEEEecCCCCCCCHHHHHHHhccCCeEEEEEccccccccc
Confidence            988763211168999999999999977655433 4569999999998888999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-----
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ-----  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-----  287 (457)
                      .|+++|.++|+++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++.++++.+...++..     
T Consensus       176 ~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~~~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~  255 (403)
T TIGR01979       176 NPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQALDCDFYVFSGHKMYGPTGIGVLYGKEELLEQMPPFLGGGEMIAEVS  255 (403)
T ss_pred             CCHHHHHHHHHHcCCEEEEEchhhcCccccCccccCCCEEEEecccccCCCCceEEEEchHHHhcCCCeecCCCceeecc
Confidence            999999999999999999999999999988888889999999999999999999999998877777665544322     


Q ss_pred             ---------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEE
Q 040741          288 ---------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNL  356 (457)
Q Consensus       288 ---------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~  356 (457)
                               ..++..|+++...++++..+++++.+ +++++.++..++++++.+.|++ +++++++++.+. ...+++.+
T Consensus       256 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~g~~~~~~~~~~~~~~~v~~  334 (403)
T TIGR01979       256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGE-IPGLRIYGPRDAEDRGGIISF  334 (403)
T ss_pred             cCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccccCceEEE
Confidence                     12355689999999999999988766 5889999999999999999998 889999875432 34667778


Q ss_pred             EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+++.+..++...|  +||.++.|..|+.      .++..+|..     +.+||+++.++|++|+++++++|+++++.+
T Consensus       335 ~~~~~~~~~~~~~L~~~gI~v~~g~~~~~------~~~~~~~~~-----~~iRiS~~~~~t~~di~~l~~~l~~~~~~~  402 (403)
T TIGR01979       335 NVEGVHPHDVGTILDEEGIAVRSGHHCAQ------PLMRRFGVP-----ATCRASFYIYNTEEDIDALVEALKKVRKFF  402 (403)
T ss_pred             EeCCcCHHHHHHHHhhCCEEEcchhhhhH------HHHHHhCCC-----CEEEEEeccCCCHHHHHHHHHHHHHHHHHh
Confidence            87766666776666  6999999888854      234445533     799999999999999999999999988765

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=100.00  E-value=3.1e-41  Score=334.27  Aligned_cols=352  Identities=30%  Similarity=0.502  Sum_probs=298.2

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~~  137 (457)
                      +|||+++.+++++.+++++.+++...+++|+++.+..+....+.+.++++.+++++|++ ++++++|+|+|+++++++.+
T Consensus         1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~   80 (373)
T cd06453           1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYG   80 (373)
T ss_pred             CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHH
Confidence            59999999999999999999999888889888777777778889999999999999998 77899999999999999999


Q ss_pred             hhhhhcC--CCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          138 VMHFYKD--KKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       138 ~~~~~~~--~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +..   +  +|++|+++.++|++........ +..|+++++++.+.++.+|++++++++++++++|++++++|++|.+.|
T Consensus        81 l~~---~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~~~tG~~~~  157 (373)
T cd06453          81 LGR---ANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLTERTKLVAVTHVSNVLGTINP  157 (373)
T ss_pred             hhh---cCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhcCCceEEEEeCcccccCCcCC
Confidence            883   2  8999999999999976654433 456999999999888889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccc------
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQE------  288 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~------  288 (457)
                      +++|.++|+++|+++++|++++.|..++++...++|++++|+||++|+.|+|+++++++.++++.+...++...      
T Consensus       158 ~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~  237 (373)
T cd06453         158 VKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDLGCDFLAFSGHKMLGPTGIGVLYGKEELLEEMPPYGGGGEMIEEVSFE  237 (373)
T ss_pred             HHHHHHHHHHcCCEEEEEhhhhcCceeeeccccCCCEEEeccccccCCCCcEEEEEchHHhhcCCCeecCCCcccccccc
Confidence            99999999999999999999999988888777889999999999888788999999998888777765544221      


Q ss_pred             --------cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          289 --------RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       289 --------~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                              ..+..++++...+.++.++++.+.+ +++++.++.+++++++.+.|.+ ++++.++.++.. ..+++.+.++
T Consensus       238 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~-~~~~~~~~~~  315 (373)
T cd06453         238 ETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSE-IPGVRVYGDAED-RAGVVSFNLE  315 (373)
T ss_pred             ccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccc-cCCeEEEEEC
Confidence                    1244578888899999999988775 5888999999999999999999 888888854322 3566677776


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      ..+..++...|  +||.+.+|..|.++      .++..|..     +.||++++.++|++|+|+++++|
T Consensus       316 ~~~~~~i~~~l~~~gi~i~~g~~~~~~------~~~~~~~~-----~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         316 GIHPHDVATILDQYGIAVRAGHHCAQP------LMRRLGVP-----GTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             CcCHHHHHHHHHHCCEEeccCccchhH------HHHHhCCC-----CeEEEEecCCCCHHHHHHHHhhC
Confidence            66667777666  69999888877652      34444433     79999999999999999999864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PLN02724 Molybdenum cofactor sulfurase

Probab=100.00  E-value=3.5e-40  Score=352.39  Aligned_cols=370  Identities=21%  Similarity=0.305  Sum_probs=297.2

Q ss_pred             cccCCCcEEecCCCCCCCCHH-HHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChH
Q 040741           52 VRIAGRPLYLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK--EIIFTSGAT  128 (457)
Q Consensus        52 ~~~~~~~i~l~~~~~~~~~~~-v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~t~g~T  128 (457)
                      ++...+.+|||+++++++++. +.+++.+++...++||++ .+..+..+.+.++++|+.+++++|++++  +|+||+|+|
T Consensus        29 fp~l~~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s-~~~~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT  107 (805)
T PLN02724         29 FARLKGVVYLDHAGATLYSESQLEAALADFSSNVYGNPHS-QSDSSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGAT  107 (805)
T ss_pred             hhhcCCCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCc-CcchhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChH
Confidence            444456899999999987764 455555677778899995 5666777778999999999999999765  489999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--------CCCCCCH--HHHHHhc-----
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--------ADGIVNL--DELRAAI-----  193 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--------~~~~~d~--~~le~~i-----  193 (457)
                      +|+++++.++..   ++|++|+++..+|.++....+.++..|+++.+++++        ..+.+|+  +++++.+     
T Consensus       108 ~alnlva~~l~~---~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~  184 (805)
T PLN02724        108 AALKLVGETFPW---SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQ  184 (805)
T ss_pred             HHHHHHHHHCCC---CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhc
Confidence            999999888753   789999999999999887666667789999999876        3444544  6677654     


Q ss_pred             -----CCCceEEEEeccccccccccChHHHHHHHHhc--------CCcEEEehhhhcCCCcccCCCCcccEEEecccccc
Q 040741          194 -----RPDTGLISVMAVNNEIGVIQPMEEIGQICKEF--------KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       194 -----~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~--------~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~  260 (457)
                           .+++++|++++++|.+|.+.|++.|..+++..        ++++++|+||++|..++++.++++|++++|+||++
T Consensus       185 ~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~~~~~Dfl~~S~HK~~  264 (805)
T PLN02724        185 KREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLSRYPADFVVVSFYKIF  264 (805)
T ss_pred             cccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChhhcCCCEEEEecceec
Confidence                 24678999999999999999999876555532        36899999999999999999999999999999988


Q ss_pred             C-CCCceEEEEecCCCccccccccCCcc-----------------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHH
Q 040741          261 G-PKGVGALYMRRRPRIRVEPLINGGGQ-----------------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKR  321 (457)
Q Consensus       261 g-~~G~G~l~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~  321 (457)
                      | |.|+|+++++++....+.|...||+.                 ..+++.||+++..++++.+|++++.+ +++++.++
T Consensus       265 GgP~G~G~L~vr~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~  344 (805)
T PLN02724        265 GYPTGLGALLVRRDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMH  344 (805)
T ss_pred             cCCCCceEEEEehhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHH
Confidence            7 89999999999888888887777643                 24578899999999999999999987 79999999


Q ss_pred             HHHHHHHHHHHHhhcCC------CeEEeCCCC-----CcccceEEEEEccccchHH----Hhc---ccCeEecccCccCC
Q 040741          322 ITALHDRLLNGIKEKLD------GVVVNGSME-----RRYIGNLNLSFAYVEGESL----LMG---LKEVAVSSGSACTS  383 (457)
Q Consensus       322 ~~~~~~~l~~~l~~~~~------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~----~~~---l~~i~~~~g~~~~~  383 (457)
                      ..++.+++.+.|.+ ++      +++++++..     ....+++.|.+.+.++..+    ...   .+||.++.|.+|.+
T Consensus       345 ~~~L~~~l~~~L~~-l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~  423 (805)
T PLN02724        345 TWALTHYVANSLRN-LKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNP  423 (805)
T ss_pred             HHHHHHHHHHHHHh-ccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCc
Confidence            99999999999998 76      588887541     2356788888876553222    222   27999999999997


Q ss_pred             CCCChhHHHHHcCCCc---------------------cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          384 ASLEPSYVLRALGVDE---------------------DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       384 ~~~~~~~~l~~~g~~~---------------------~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +..+     ..+|+.+                     ....+.||+|+++++|.+|||++++.|++.+-
T Consensus       424 ~~~~-----~~lg~~~~~l~~~~~~~~~c~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        424 GACA-----KYLGLSHKDLQANFEAGHVCWDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             hHHH-----HHcCCCHHHHHHHhhcCCccCchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence            5332     1222211                     11238999999999999999999999999774

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=100.00  E-value=6.7e-39  Score=317.92  Aligned_cols=354  Identities=32%  Similarity=0.570  Sum_probs=290.6

Q ss_pred             EEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHH
Q 040741           59 LYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNVSIK  136 (457)
Q Consensus        59 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~  136 (457)
                      +|||+++.+ ++|+.+++++.+++....++++.+.+.......+.+.++++.+++++|+++ ++++|++|+|+++++++.
T Consensus         1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~   80 (376)
T TIGR01977         1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALK   80 (376)
T ss_pred             CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHH
Confidence            599998877 788999999999988755555543333333445788999999999999864 479999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      ++.    ++|++|+++..+|+++...+... +..|.+++.++.+.++.+|+++++++++++++++++++++|++|.+.|+
T Consensus        81 ~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~n~tG~~~~~  156 (376)
T TIGR01977        81 GLL----KEGDHVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIKTNTKLIVVSHASNVTGTILPI  156 (376)
T ss_pred             hcc----CCCCEEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcCCCCeEEEEECCCCCccccCCH
Confidence            876    79999999999999987765543 4559999999988888899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ-------  287 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-------  287 (457)
                      ++|.++|+++|+++++|++|++|..++++..+++|++++|+|| ++||.|+|+++++++.  .+.+...++..       
T Consensus       157 ~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~--~~~~~~~~~~~~~~~~~~  234 (376)
T TIGR01977       157 EEIGELAQENGIFFILDAAQTAGVIPIDMTELAIDMLAFTGHKGLLGPQGTGGLYIREGI--KLKPLKSGGTGSHSALID  234 (376)
T ss_pred             HHHHHHHHHcCCEEEEEhhhccCccCCCchhcCCCEEEecccccccCCCCceEEEEcCCc--CcCceecCCCcccccccc
Confidence            9999999999999999999999999999888899999999999 5678899999998875  23343332211       


Q ss_pred             -----ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceEEEEEcc
Q 040741          288 -----ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNLNLSFAY  360 (457)
Q Consensus       288 -----~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~  360 (457)
                           ..++..++++...+.++..+++++.+ +++++.++..++++++.+.|.+ .+++.++++.+ ....+++.+.+++
T Consensus       235 ~~~~~~~r~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~-~~~~~~~~~~~~~~~~~~v~~~~~~  313 (376)
T TIGR01977       235 QPSELPDRFESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLRE-INKVKIYGPADPANRVGVVSFTVEG  313 (376)
T ss_pred             ccccchhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCCCccccCCeEEEEECC
Confidence                 12456789999999999999998876 5889999999999999999998 88999887532 2335677777776


Q ss_pred             ccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       361 ~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+..++...|  + ||.+..|.+|++.      ....+|.   ...+.||++++.++|.+||++++++|++
T Consensus       314 ~~~~~~~~~L~~~~gi~v~~g~~~~~~------~~~~~g~---~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       314 IDSEEVADILDEKFDIATRTGLHCAPL------AHKTIGT---FATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             CCHHHHHHHHhccCCEEEEcccccchH------HHHHhCC---CCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            6777777777  4 8999999888752      2233432   2347999999999999999999999975

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=100.00  E-value=5.2e-39  Score=320.96  Aligned_cols=357  Identities=21%  Similarity=0.322  Sum_probs=290.1

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      .+|||+++++++|+++++++.+++.....++.+ .+.......+.++++++.+++++|++++++++++|+|+++++++.+
T Consensus        18 ~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~   96 (397)
T TIGR01976        18 RVFFDNPAGTQIPQSVADAVSAALTRSNANRGG-AYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRA   96 (397)
T ss_pred             eEEecCCccCCCCHHHHHHHHHHHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHH
Confidence            699999999999999999999998765555543 2333334457789999999999999877899999999999887777


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHH-HHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSC-RHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      +.... ++|++|+++.++|++....+ ..++..|+++++++.+. ++.+|++++++++++++++|++++++|++|.+.|+
T Consensus        97 ~~~~~-~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~i~~~~~lv~i~~~~n~tG~~~~~  175 (397)
T TIGR01976        97 ISRRW-GPGDEVIVTRLDHEANISPWLQAAERAGAKVKWARVDEATGELHPDDLASLLSPRTRLVAVTAASNTLGSIVDL  175 (397)
T ss_pred             HHhcC-CCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEEeccccCCCcCHHHHHHhcCCCceEEEEeCCCCCCCccCCH
Confidence            63111 78999999999999987665 34466799999999875 68899999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC---ccccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG---GQERGIR  292 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~---~~~~~~~  292 (457)
                      ++|.++|+++|+++++|++|+.|..++++.++++|++++|+||++|++ +|+++++++.++.+.+....+   ....++.
T Consensus       176 ~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~-~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~  254 (397)
T TIGR01976       176 AAITELVHAAGALVVVDAVHYAPHGLIDVQATGADFLTCSAYKFFGPH-MGILWGRPELLMNLPPYKLTFSYDTGPERFE  254 (397)
T ss_pred             HHHHHHHHHcCCEEEEehhhhccccCCCHHHcCCCEEEEechhhcCCc-eEEEEEcHHHHhhCCCccccCccCCCcchhc
Confidence            999999999999999999999988888888889999999999999986 899999988776666543322   1223477


Q ss_pred             cCCCChhHHHHHHHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceEEE
Q 040741          293 SGTLPTPLIVGFGSACEIAKKE---------------MDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNLNL  356 (457)
Q Consensus       293 ~~t~~~~~~~al~~al~~~~~~---------------~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~  356 (457)
                      .||+++..++++.+|++++.+.               +++..++..++++++++.|++ +++++++++.+ ....+++.+
T Consensus       255 ~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~  333 (397)
T TIGR01976       255 LGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSD-LPGVTLYGVARLAARVPTVSF  333 (397)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCCCccCCCceEEE
Confidence            8999999999999999887542               566777888899999999998 77898887522 223556666


Q ss_pred             EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      .+.+.+..++...|  +||.++.+..|.+      .+++.+|+..  ..++|||+++.++|++|+++++++|
T Consensus       334 ~~~~~~~~~l~~~L~~~gI~v~~~~~~~~------~~~~~~~~~~--~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       334 TVHGLPPQRVVRRLADQGIDAWAGHFYAV------RLLRRLGLND--EGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             EeCCcCHHHHHHHHHHCCeEEEeCccchH------HHHHHhCCCC--CCCeEEEEeeccCCHHHHHHHHHhC
Confidence            66655567777777  6999998877753      4567777642  2368999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>TIGR01814 kynureninase kynureninase

Probab=100.00  E-value=1.6e-37  Score=310.37  Aligned_cols=342  Identities=17%  Similarity=0.202  Sum_probs=267.3

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+++|||+++.+++|+.+.+++.+++... +++.++.+..+. .+......+++ + +++|+++++++|++|+|++++++
T Consensus        26 ~~~iyld~~a~g~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~  102 (406)
T TIGR01814        26 NAVIYLDGNSLGLMPKAARNALKEELDKW-AKIAIRGHNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLL  102 (406)
T ss_pred             CCcEEecCCCcCcCcHHHHHHHHHHHHHH-HHhhhccCccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHH
Confidence            56899998888899999999999988653 333222222211 22233444444 5 89999999999999999999999


Q ss_pred             HHHhhhhhcCC---CCEEEEcCCCCcchHHHHH-HHHhcCcEE----EEEeCCCCCCCCHHHHHHhc---CCCceEEEEe
Q 040741          135 IKGVMHFYKDK---KRHVITTQTEHKCVLDSCR-HLQQEGFEI----TYLPVGADGIVNLDELRAAI---RPDTGLISVM  203 (457)
Q Consensus       135 l~~~~~~~~~~---g~~vi~~~~~h~~~~~~~~-~~~~~G~~v----~~v~~~~~~~~d~~~le~~i---~~~t~li~i~  203 (457)
                      +.++.    ++   +++|+++..+|++....+. .++..|+++    +.++.+.++.+|++++++++   +++|++|+++
T Consensus       103 ~~~~~----~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~  178 (406)
T TIGR01814       103 LASFY----KPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLS  178 (406)
T ss_pred             HHHhc----CCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEe
Confidence            99874    33   3478899999999888765 345668887    56666667788999998887   4789999999


Q ss_pred             ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc
Q 040741          204 AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       204 ~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      +++|.+|.+.|+++|.++|+++|+++++|++|++|..++++..+++|++++|+||+ +||+| |.++++++....+.+..
T Consensus       179 ~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~~~gvD~~~~s~hK~l~g~pG-~~l~v~~~~~~~~~p~~  257 (406)
T TIGR01814       179 GVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLHDWGVDFACWCTYKYLNAGPG-AGAFVHEKHAHTERPRL  257 (406)
T ss_pred             ccccccceecCHHHHHHHHHHcCCEEEEEcccccCCcccccccCCCCEEEEcCccccCCCCC-eEEEEehhhhhhcCCCC
Confidence            99999999999999999999999999999999999999999999999999999995 56778 77777665554555543


Q ss_pred             cCC----------------ccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC----CCeE
Q 040741          283 NGG----------------GQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKL----DGVV  341 (457)
Q Consensus       283 ~~~----------------~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~~~  341 (457)
                      .||                ....+++.||+++..++++.++++++.+ +++++.++.+++.+++++.|.+ +    +++.
T Consensus       258 ~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~  336 (406)
T TIGR01814       258 AGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKA-RCGGPPVLT  336 (406)
T ss_pred             CcccCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-hcCCCCceE
Confidence            332                1223566799999999999999999865 6899999999999999999987 5    3588


Q ss_pred             EeCCCC-CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHH
Q 040741          342 VNGSME-RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEA  417 (457)
Q Consensus       342 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~e  417 (457)
                      ++++.+ ...++++.+.++ .+.+++...|  +||.+...                       ..+.|||++ +.++|++
T Consensus       337 i~~~~~~~~r~~~v~~~~~-~~~~~~~~~L~~~gi~v~~~-----------------------~~~~iRiS~~~~~nt~~  392 (406)
T TIGR01814       337 IITPRDHAQRGCQLSLTHP-VPGKAVFQALIKRGVIGDKR-----------------------EPSVIRVAPVPLYNTFV  392 (406)
T ss_pred             EeCCCChhhcCCeEEEEec-CCHHHHHHHHHHCCEEEecc-----------------------CCCeEEEechhccCCHH
Confidence            887543 223566777777 5677777776  57765311                       126899999 5899999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQV  430 (457)
Q Consensus       418 did~~~~~l~~~~  430 (457)
                      |||+++++|++.+
T Consensus       393 did~l~~~l~~~~  405 (406)
T TIGR01814       393 DVYDAVNVLEEIL  405 (406)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>PLN02409 serine--glyoxylate aminotransaminase

Probab=100.00  E-value=4.3e-35  Score=291.77  Aligned_cols=341  Identities=13%  Similarity=0.151  Sum_probs=277.6

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNVSIK  136 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~  136 (457)
                      ..+|..+++..++++|+++|......+          .+....+.++++++.+++++|+++ +.++++++||.+++.++.
T Consensus         9 ~~~l~~pGP~~~~~~V~~a~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~   78 (401)
T PLN02409          9 RNHLFVPGPVNIPERVLRAMNRPNEDH----------RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALT   78 (401)
T ss_pred             CceeccCCCCCCCHHHHHHhcCCCCCC----------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHH
Confidence            457889999999999999997754221          134566899999999999999975 468999999999999998


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~~  212 (457)
                      ++.    ++||+|++..+.|++... ...++..|++++.++.+.++.+|++++++++++    ++++|++++++|++|.+
T Consensus        79 ~~~----~~Gd~Vlv~~~~~~~~~~-~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~  153 (401)
T PLN02409         79 NTL----SPGDKVVSFRIGQFSLLW-IDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVT  153 (401)
T ss_pred             hcC----CCCCEEEEeCCCchhHHH-HHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeeccccccc
Confidence            887    899999999988877653 245566799999999887666899999999986    78999999999999999


Q ss_pred             cChHHHHHH--HHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc-----cC
Q 040741          213 QPMEEIGQI--CKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI-----NG  284 (457)
Q Consensus       213 ~~l~~i~~l--~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~-----~~  284 (457)
                      .|+++|.++  |+++|+++++|+++++|..++++.++++|++++|+||+ +||.|+|+++++++.++++.+..     .+
T Consensus       154 ~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~~~~  233 (401)
T PLN02409        154 NDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRVFFD  233 (401)
T ss_pred             CCHHHHHHHHhhhccCcEEEEEcccccCCccccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCeecC
Confidence            999999999  99999999999999999999999999999999999994 57889999999988766654321     11


Q ss_pred             Ccc-----cc-ccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEE
Q 040741          285 GGQ-----ER-GIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNL  356 (457)
Q Consensus       285 ~~~-----~~-~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~  356 (457)
                      +..     +. .+..+|+++..++++..+++++.+ +++++.++.+++++++++.|.+ + ++.++++. ..+.+.++.+
T Consensus       234 ~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~-~-g~~~~~~~~~~~s~~v~~~  311 (401)
T PLN02409        234 WADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEA-W-GLKLCTKKPEWRSDTVTAV  311 (401)
T ss_pred             HHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcccceEEE
Confidence            100     01 122568999999999999999776 6999999999999999999988 5 88888743 3344455556


Q ss_pred             EEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          357 SFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       357 ~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .++ +.+..++...+   .+|.+..|...                   ..++.+||++..+++.+|+..++.+|++++++
T Consensus       312 ~~p~~~~~~~l~~~l~~~~~i~i~~G~~~-------------------~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~  372 (401)
T PLN02409        312 VVPEGIDSAEIVKNAWKKYNLSLGLGLNK-------------------VAGKVFRIGHLGNVNELQLLGALAGVEMVLKD  372 (401)
T ss_pred             eCCCCCCHHHHHHHHHHhCCEEEEcCCCc-------------------ccCCEEEEcCCCCCCHHHHHHHHHHHHHHHHH
Confidence            553 45666666555   48888877532                   22489999999999999999999999999987


Q ss_pred             HH
Q 040741          433 LR  434 (457)
Q Consensus       433 ~~  434 (457)
                      ++
T Consensus       373 ~g  374 (401)
T PLN02409        373 VG  374 (401)
T ss_pred             cC
Confidence            76

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=100.00  E-value=2e-34  Score=283.71  Aligned_cols=333  Identities=18%  Similarity=0.253  Sum_probs=261.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhhhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKGVMHF  141 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~~~~  141 (457)
                      .+++.++++++++++.+.+..         +. +....+..+++++.+++++|++++ .+++++|||+|+.+++.++.  
T Consensus         4 ~~~~~~~~~~v~~a~~~~~~~---------~~-~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~~--   71 (356)
T cd06451           4 IPGPSNVPPRVLKAMNRPMLG---------HR-SPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNLL--   71 (356)
T ss_pred             cCCCcCCCHHHHHHhCCCccC---------CC-CHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHhC--
Confidence            467778999999999765421         11 223456789999999999999544 58899999999999999987  


Q ss_pred             hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHHHHH
Q 040741          142 YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQ  220 (457)
Q Consensus       142 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~i~~  220 (457)
                        .+|+.|++..+.|++... ...++..|+++++++.+.++.+|++++++++++ ++++|++++++|++|.+.|+++|.+
T Consensus        72 --~~g~~vl~~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i~~  148 (356)
T cd06451          72 --EPGDKVLVGVNGVFGDRW-ADMAERYGADVDVVEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGIGA  148 (356)
T ss_pred             --CCCCEEEEecCCchhHHH-HHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHHHH
Confidence              789999999888876321 133445599999999887788999999999987 8999999999999999999999999


Q ss_pred             HHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccccc-CCCCceEEEEecCCCccccc--cccCCc----------c
Q 040741          221 ICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEP--LINGGG----------Q  287 (457)
Q Consensus       221 l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~--~~~~~~----------~  287 (457)
                      +|+++|+++++|++|++|..+++....++|++++|+||++ +|.|+|+++++++..+++..  ...++.          .
T Consensus       149 ~a~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (356)
T cd06451         149 LAKKHDALLIVDAVSSLGGEPFRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWG  228 (356)
T ss_pred             HHHhcCCEEEEeeehhccCccccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhc
Confidence            9999999999999999998888877778999999999954 57789999999876655542  111110          0


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGES  365 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  365 (457)
                      ...+..+++++..++++.++++++.+ ++++..++.+++++++.+.|.+ . ++.+.+++..+.+.++.+.++ +.+..+
T Consensus       229 ~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (356)
T cd06451         229 EGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEA-L-GLKLLAKPELRSPTVTAVLVPEGVDGDE  306 (356)
T ss_pred             ccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCCceEEEECCCCCCHHH
Confidence            11245678888888999999988765 5788899999999999999998 5 787776543333333344443 345567


Q ss_pred             HHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       366 ~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +...|  + ||.+.+|..|.                   ..++||++++.++++||+++++++|+++++
T Consensus       307 ~~~~L~~~~gI~~~~g~~~~-------------------~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         307 VVRRLMKRYNIEIAGGLGPT-------------------AGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             HHHHHHHhCCEEEecccccc-------------------cCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            77776  5 89888775432                   126999999999999999999999998763

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>PRK02769 histidine decarboxylase; Provisional

Probab=100.00  E-value=2.5e-33  Score=274.36  Aligned_cols=335  Identities=16%  Similarity=0.184  Sum_probs=266.4

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE--IIFTSGATESNN  132 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--i~~t~g~T~a~~  132 (457)
                      ..+..|+.++.+...+...++.+..+..+.+|||.+ .+.++....+...++++++++++|+++++  .+||+|||+|++
T Consensus        20 ~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~-~~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~   98 (380)
T PRK02769         20 HNQYFNVGYPEAADFDYSALKRFFSFSINNCGDPYS-KSNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNL   98 (380)
T ss_pred             HhhhcccCCCchhhcCHHHHHHHHHhhhccCCCccc-cCCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHH
Confidence            345578888888888878888888888888899977 67777777788889999999999997655  599999999998


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC---ceEEEEecccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD---TGLISVMAVNNEI  209 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~---t~li~i~~~~~~~  209 (457)
                      .++......  .++++|++++.+|+++..+++.+   |.+...++.+.+|.+|+++|+++|+++   |.+|++++++|++
T Consensus        99 ~a~~~ar~~--~~~~~ii~s~~~H~Sv~ka~~~l---g~~~~~V~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~t  173 (380)
T PRK02769         99 YGCYLAREL--FPDGTLYYSKDTHYSVSKIARLL---RIKSRVITSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMT  173 (380)
T ss_pred             HHHHHHHHh--CCCcEEEeCCCceehHHHHHHHc---CCCCceeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCC
Confidence            887766542  45789999999999999999888   777777888888999999999999876   9999999999999


Q ss_pred             ccccChHHHHHHHHhcC---CcEEEehhhhcCCCc-------ccCCCCcccEEEeccccccC-CCCceEEEEecCCCccc
Q 040741          210 GVIQPMEEIGQICKEFK---IPFHTDAAQALGKIP-------VDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRV  278 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~---v~li~D~a~~~g~~~-------~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~  278 (457)
                      |.+.|+++|.++|++||   +++|+|+|++.+..+       +++.. ++|.+++|+||++| |.|+|+++++++...++
T Consensus       174 G~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~  252 (380)
T PRK02769        174 GAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD-GIDSIAISGHKFIGSPMPCGIVLAKKKYVERI  252 (380)
T ss_pred             cccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC-CCCEEEECCcccCCCCCCcEEEEEehhhhhhc
Confidence            99999999999999998   699999999998875       56655 89999999999765 99999999998766555


Q ss_pred             cccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                      .+...--........|+.+...++++..+++.+.. ++.++.++..++++++.+.|++  .++.+..++.   .+  .+.
T Consensus       253 ~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~~~~la~~l~~~L~~--~g~~~~~~p~---~~--~v~  325 (380)
T PRK02769        253 SVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQHCLDMAQYAVDRLQA--NGIPAWRNPN---SI--TVV  325 (380)
T ss_pred             ccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCC---ce--EEE
Confidence            33111000111123677887778888888887654 6999999999999999999988  5888876643   23  344


Q ss_pred             EccccchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       358 ~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      |+..+ ..+.   ++-.+..                        ....+|+++...+++|.||.+++.|.+...
T Consensus       326 f~~~~-~~~~---~~w~l~~------------------------~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        326 FPCPS-ERIW---KKWHLAT------------------------SGNQAHIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             EcCCC-HHHH---hCeeEcc------------------------cCCEEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            54333 2222   3333321                        015899999999999999999999988765

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=100.00  E-value=1.5e-33  Score=278.00  Aligned_cols=333  Identities=17%  Similarity=0.196  Sum_probs=256.7

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK--EIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~t~g~T~a~~~al~~  137 (457)
                      +|-.+++..++++|.++|..... .+          +..+.+.++++++.+++++|++++  ++++|+|||+|++.++.+
T Consensus         5 ~l~~pgp~~~~~~v~~~~~~~~~-~~----------~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~   73 (363)
T TIGR02326         5 LLLTPGPLTTSRTVKEAMLFDWC-TW----------DSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGS   73 (363)
T ss_pred             eEecCCCCCCCHHHHHHhCCCCC-CC----------ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHh
Confidence            35577788888999988766541 11          235567899999999999999764  699999999999999999


Q ss_pred             hhhhhcCCCCEE-EEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEeccccccccccC
Q 040741          138 VMHFYKDKKRHV-ITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       138 ~~~~~~~~g~~v-i~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~~~G~~~~  214 (457)
                      +.    .+++++ ++...+|+...  ...++..|.+++.++.+.++.+|+++++++++.  +++++++++++|++|.+.|
T Consensus        74 l~----~~~~~vlv~~~~~~~~~~--~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~  147 (363)
T TIGR02326        74 AV----PKDGKLLVVINGAYGARI--VQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILNP  147 (363)
T ss_pred             cC----CCCCeEEEEeCChhhHHH--HHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccCc
Confidence            87    566665 44555555432  133355699999999988888999999999875  4578899999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCc-------
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGG-------  286 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~-------  286 (457)
                      +++|.++|+++|+++++|++|++|..++++..+++|++++|+|| ++||+|+|+++++++..+++.+...+..       
T Consensus       148 i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  227 (363)
T TIGR02326       148 IEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLDLYDQW  227 (363)
T ss_pred             HHHHHHHHHHcCCEEEEEccccccCcccchhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeecHHHHH
Confidence            99999999999999999999999999999998999999999999 5689999999999876655432211100       


Q ss_pred             ----cccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          287 ----QERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       287 ----~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                          ...+.+..+++.+.+.++.++++.+.+  +++++.++++++++++++.|++ + ++.++.+++.+.+.++.+.++.
T Consensus       228 ~~~~~~~~~~~ft~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~  305 (363)
T TIGR02326       228 RCMEDNHGKWRFTSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRA-L-GFEPLLDDEIQSPIITSFYSPE  305 (363)
T ss_pred             HHHhccCCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCcccCCceEEEEECCC
Confidence                011123347788899999999988755  3788999999999999999988 4 7777655443444455566653


Q ss_pred             ---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          361 ---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       361 ---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                         .+...+.+.|  +||.+.+|..+.                    .+.|||++..+++.+|+++++++|++++.
T Consensus       306 ~~~~~~~~v~~~L~~~gi~v~~g~~~~--------------------~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       306 DPDYRFADFYQRLKEQGFVIYPGKVSQ--------------------VDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             CCCCCHHHHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence               2345566666  689988775321                    26899998777899999999999988753

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=100.00  E-value=4.3e-33  Score=276.13  Aligned_cols=350  Identities=15%  Similarity=0.110  Sum_probs=259.4

Q ss_pred             CCcEEecCCC--------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-C-CcEEE--
Q 040741           56 GRPLYLDMQA--------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-P-KEIIF--  123 (457)
Q Consensus        56 ~~~i~l~~~~--------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~-~~i~~--  123 (457)
                      ...+|+|+..        ++++.|++.++|.+.+...++||++.    +... +..+++++++++++|++ + +++.|  
T Consensus        32 ~~~iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~----~~~~-~le~~~~~~la~llg~~~~~~~~~g~~  106 (431)
T TIGR01788        32 HDELSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEY----PQTA-EIENRCVNMLADLWHAPAKDAEAVGTS  106 (431)
T ss_pred             HHHhhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccC----ccHH-HHHHHHHHHHHHHhCCCCCCCCCeEEE
Confidence            3467899988        89999999999999998778888762    3344 78899999999999997 3 45555  


Q ss_pred             eCChHHHHHHHHHHhhhhhc----C-----CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhc
Q 040741          124 TSGATESNNVSIKGVMHFYK----D-----KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAI  193 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~----~-----~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i  193 (457)
                      |+|||+|+++++.+....+.    .     .+.+|+++..+|+++..+++.+   |+++++++++.+ +.+|+++|+++|
T Consensus       107 TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~l---g~~v~~i~~d~~~~~vd~~~L~~~i  183 (431)
T TIGR01788       107 TIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYF---DVELREVPMDPGRYVIDPEQVVEAV  183 (431)
T ss_pred             echHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHc---CceeEEEecCCCceeeCHHHHHHHH
Confidence            89999999999987653211    1     1348999999999999998877   999999999875 589999999999


Q ss_pred             CCCceEEEEeccccccccccChHHHHHHHHhc------CCcEEEehhhh-------cCCCcccCCCCcccEEEeccccc-
Q 040741          194 RPDTGLISVMAVNNEIGVIQPMEEIGQICKEF------KIPFHTDAAQA-------LGKIPVDVEKWNVSLMSLSGHKI-  259 (457)
Q Consensus       194 ~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~------~v~li~D~a~~-------~g~~~~~~~~~~~Di~~~s~~K~-  259 (457)
                      +++|.+|++++++|.+|.+.|+++|+++|+++      |+++|+|+||+       .+..+.++...++|.+++|+||+ 
T Consensus       184 ~~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~  263 (431)
T TIGR01788       184 DENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYG  263 (431)
T ss_pred             hhCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhcc
Confidence            99999999999999999999999999999999      99999999999       44555555555789999999995 


Q ss_pred             cCCCCceEEEEecC--CCccccc--cccCCcc-ccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Q 040741          260 YGPKGVGALYMRRR--PRIRVEP--LINGGGQ-ERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       260 ~g~~G~G~l~~~~~--~~~~~~~--~~~~~~~-~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +||.|+|+++++++  +...+..  ...++.. ...... +-+.....++...+.. ...++.++.++..++++++.+.|
T Consensus       264 ~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~-sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L  342 (431)
T TIGR01788       264 LVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNF-SRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEI  342 (431)
T ss_pred             CCCCCcEEEEEeChHHcchhheecccccCCCCCCcceec-CchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHH
Confidence            59999999999875  2122211  1222211 011111 1121122222222222 23579999999999999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEcc-----ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAY-----VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ++ .++++++++.  ...+++.|.+.+     .+..++...|  +|+.+..-.  ++.              .-.+.-.+
T Consensus       343 ~~-~~~~el~~~~--~~~~iV~Fr~~~~~~~~~~~~~l~~~L~~~G~~~~~~~--~p~--------------~~~~~~~l  403 (431)
T TIGR01788       343 AK-LGPFEIISDG--SGIPLVAFKLKDDADPGYTLYDLSHRLRERGWIVPAYT--LPK--------------NAEDIVVM  403 (431)
T ss_pred             Hh-CCCEEEeeCC--CCceEEEEEeCCCCCCCcCHHHHHHHHHHCCCcccCCC--CCC--------------ccCCeEEE
Confidence            99 8999998752  236777777763     3334566666  455432110  000              01123578


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      |+++...++++.++.+++.|++++..+
T Consensus       404 R~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (431)
T TIGR01788       404 RIVVREGFSRDLAELLIEDIEAALAYL  430 (431)
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence            999988899999999999999998765

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-33  Score=263.26  Aligned_cols=340  Identities=19%  Similarity=0.248  Sum_probs=281.3

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~~~  138 (457)
                      .|-.+|+.+++++|+++|......          .....+...+.++.+.+..+++.+. +-++++++||.|++.++.++
T Consensus         7 ~Ll~PGP~~v~~~V~~am~~~~~~----------h~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl   76 (383)
T COG0075           7 LLLTPGPVPVPPRVLLAMARPMVG----------HRSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL   76 (383)
T ss_pred             eeeeCCCCCCCHHHHHHhcCCCCC----------CCCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc
Confidence            566788999999999999887643          2245667899999999999999873 45888899999999999999


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEeccccccccccChH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~~~~~~G~~~~l~  216 (457)
                      .    +|||+|++....-++... .+.++..|++++.+..+.+..+|+++++++++  ++.++|+++|..++||+..|++
T Consensus        77 ~----~pgdkVLv~~nG~FG~R~-~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~  151 (383)
T COG0075          77 V----EPGDKVLVVVNGKFGERF-AEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLK  151 (383)
T ss_pred             c----CCCCeEEEEeCChHHHHH-HHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHH
Confidence            9    899999887665555543 36678889999999999988999999999998  4467999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccC-C---------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING-G---------  285 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~-~---------  285 (457)
                      +|+++||+||.++++|++.++|..++++++|++|+++.+++| +.+|+|+|++.++++..+++...... +         
T Consensus       152 ~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~  231 (383)
T COG0075         152 EIAKAAKEHGALLIVDAVSSLGGEPLKVDEWGIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLDLKKWLK  231 (383)
T ss_pred             HHHHHHHHcCCEEEEEecccCCCcccchhhcCccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeecHHHHHH
Confidence            999999999999999999999999999999999999999999 56799999999999876665422111 1         


Q ss_pred             cccc-ccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-ccc
Q 040741          286 GQER-GIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVE  362 (457)
Q Consensus       286 ~~~~-~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  362 (457)
                      .++. +.++.|+++..+.++..|++.+.+ +++.+.+++++++++++++++.  .|+.++.+++...+.+..+..+ +++
T Consensus       232 ~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~a--lGl~~~~~~~~~s~tvta~~~P~g~~  309 (383)
T COG0075         232 YMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEA--LGLELFADPERRSPTVTAIKVPEGVD  309 (383)
T ss_pred             HHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH--cCCccccCcccCCCceEEEECCCCCC
Confidence            1112 567789999999999999999886 5999999999999999999999  6899988655666666666664 344


Q ss_pred             chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          363 GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       363 ~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +.+....+   .++.+.+|.                   ....+..+||+.....+.+|+.+++.+|+.++++++.
T Consensus       310 ~~~~~~~~~~~~g~~i~gg~-------------------~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~~~g~  366 (383)
T COG0075         310 DKKVRRALLKEYGVEIAGGQ-------------------GPLKGKIFRIGHMGNVRPEDVLAALAALEAALRELGV  366 (383)
T ss_pred             cHHHHHHHHHhCCEEecccc-------------------cccCccEEEEecCccCCHHHHHHHHHHHHHHHHHcCC
Confidence            43343333   477776664                   3345589999998899999999999999999998754

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=100.00  E-value=9.8e-33  Score=273.88  Aligned_cols=343  Identities=15%  Similarity=0.177  Sum_probs=254.3

Q ss_pred             CCCcEEecC-CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDM-QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~-~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ...+|.||. +..+|+++++++++.++.. .+++|.+-.+..++...+.+.++++.+++++|+++  ++|++|+|+|+.+
T Consensus        17 ~~~~~~~~~~~~~~p~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~~--~~~~~g~t~a~~~   93 (387)
T PRK09331         17 EEEFINLDPIQRGGILTPEARKALIEYGD-GYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMDE--ARVTHGAREGKFA   93 (387)
T ss_pred             cccccccChhhcCCCCCHHHHHHHHHHHh-ccCCCcccccccccccChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHH
Confidence            345666764 4456999999999999984 45666543555566666789999999999999964  8899999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcCC-------CceEEEEec
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIRP-------DTGLISVMA  204 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~~-------~t~li~i~~  204 (457)
                      ++.++.    ++|++|+++..+|.+...+++..   |+++++++.  +.++.+|++++++++++       ++++|++++
T Consensus        94 al~~l~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~  166 (387)
T PRK09331         94 VMHSLC----KKGDYVVLDGLAHYTSYVAAERA---GLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTH  166 (387)
T ss_pred             HHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEEC
Confidence            999997    89999999999999998876554   999999998  66788999999999863       689999999


Q ss_pred             cccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccccc-CCCCceEEEEecCCCcccccccc
Q 040741          205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      ++|++|.+.|+++|.++|++||+++|+|++|+.|..+++...+++|++++|+||++ ++.|+|+++++++.++++.....
T Consensus       167 ~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~  246 (387)
T PRK09331        167 VDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSR  246 (387)
T ss_pred             CCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccC
Confidence            99999999999999999999999999999999999998888889999999999954 56789999999876665543322


Q ss_pred             CCcccc-ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-
Q 040741          284 GGGQER-GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-  361 (457)
Q Consensus       284 ~~~~~~-~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  361 (457)
                      ...... ....++.+....+++.++++.+.+.+ ...++..++++++++.|.+ +++++++++... ..+++.+..+.. 
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~aal~~~~~~~-~~~~~~~~~~~~l~~~L~~-l~g~~~~~~~~~-~~~i~~~~~~~~~  323 (387)
T PRK09331        247 KFGVKEVELLGCTLRGAPLVTLMASFPHVVERV-KRWDEEVKKARWFVDELEK-IEGFKQLGEKPR-NHDLMKFETPSFD  323 (387)
T ss_pred             CCcccceeeeceecCchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc-CCCEEEeccCcC-cCCeEEEeCCchh
Confidence            111000 01122333334555555666655443 3456667888899999999 889999863221 233443443321 


Q ss_pred             --------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          362 --------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       362 --------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                              ++..+...|  +||.....                      .....+|+.... ++++|+++++++|+++++
T Consensus       324 ~~~~~~~~~~~~~~~~L~~~gI~~~~~----------------------~~~~i~ri~~~g-~t~~di~~l~~aL~~i~~  380 (387)
T PRK09331        324 EIAKKHKRRGFFLYEELKKRGIHGIKP----------------------GATKEFKLSTYG-LTWEQVEYVADAFKEIAE  380 (387)
T ss_pred             HHhhhccccchhHHHHHHHcCceEEcc----------------------CCceEEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence                    123344555  35542110                      112456666533 789999999999999877


Q ss_pred             HH
Q 040741          432 KL  433 (457)
Q Consensus       432 ~~  433 (457)
                      ++
T Consensus       381 ~~  382 (387)
T PRK09331        381 KY  382 (387)
T ss_pred             hc
Confidence            64

>PLN03032 serine decarboxylase; Provisional

Probab=100.00  E-value=9.1e-33  Score=268.25  Aligned_cols=329  Identities=17%  Similarity=0.176  Sum_probs=254.4

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcE--EEeCChHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI--IFTSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i--~~t~g~T~a~~~  133 (457)
                      ....+++++.+.-++..++++|.+++.+.+|||.+ .|.+|....+...++++++++++|++++++  +||+|||+||+.
T Consensus        22 ~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~gnP~s-~~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~  100 (374)
T PLN03032         22 KSSVHFGYPYNLDFDYGELSQLMKYSINNLGDPFI-ESNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLH  100 (374)
T ss_pred             hhhhccCCCchhccChHHHHHHHHhcccCCCCCcc-cCCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHH
Confidence            44568888888888888999999999988999998 788898999999999999999999987765  999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEEEeccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---DTGLISVMAVNNEIG  210 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G  210 (457)
                      ++.+....  .++.+|+++..+|+++.++++.+   |..++.+|++.+|.+|+++|+++|++   +|.+|+++..+|++|
T Consensus       101 al~~ar~~--~~~~~vi~s~~~H~Sv~kaa~~l---g~~~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG  175 (374)
T PLN03032        101 GILVGREV--FPDGILYASRESHYSVFKAARMY---RMEAVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKG  175 (374)
T ss_pred             HHHHHHHh--CCCcEEEeCCCceeHHHHHHHHc---CCCCeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCc
Confidence            99876643  24568999999999999999888   88888999999999999999999986   478999999999999


Q ss_pred             cccChHHHHHHHHhcC-----CcEEEehhhhcCCCcc-------cCCCCcccEEEeccccccC-CCCceEEEEecCCCcc
Q 040741          211 VIQPMEEIGQICKEFK-----IPFHTDAAQALGKIPV-------DVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIR  277 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~-----v~li~D~a~~~g~~~~-------~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~  277 (457)
                      .+.|+++|+++|+++|     +++|+|+|++.+..++       ++. .++|.+++|+||++| |.|+|+++++++....
T Consensus       176 ~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~-~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~  254 (374)
T PLN03032        176 AVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFR-KPIGSVSVSGHKFLGCPMPCGVALTRKKHVKA  254 (374)
T ss_pred             cCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCC-cCCcEEEECcccccCCCcCeEEEEEEchhhHh
Confidence            9999999999999996     5899999999887764       333 268999999999877 9999999999866543


Q ss_pred             cc---ccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          278 VE---PLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       278 ~~---~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      +.   +++....  . .-.|+-+....+.+..+++.. .+++.++.+++-++++++.+.|.+ . ++.+..++.     .
T Consensus       255 ~~~~~~Yl~~~d--~-ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~-~-~~~~~~~p~-----~  324 (374)
T PLN03032        255 LSQNVEYLNSRD--A-TIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTE-A-GLTCRLNEL-----S  324 (374)
T ss_pred             hccCCcccCCCC--C-cccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcEEECCC-----c
Confidence            32   1111110  0 112333333333344444443 457999999999999999999998 4 666655432     2


Q ss_pred             EEEEEccccchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ..+.|.....+.+.   ++-.+.+                        ..+.+|+++...++++.+|.+++.|++
T Consensus       325 ~~V~f~~~~~~~~~---~~w~l~~------------------------~~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        325 STVVFERPMDEAFI---KKWQLAC------------------------EGDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             eEEEEcCCCcHhHh---heeeecc------------------------cCCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            23444433222211   3322221                        015899999998999999999988865

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=100.00  E-value=2.5e-32  Score=269.93  Aligned_cols=337  Identities=16%  Similarity=0.190  Sum_probs=259.5

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP--KEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--~~i~~t~g~T~a~~~al~~  137 (457)
                      +|-.+++.++++.++++|.+.+ ..+          ...+.+.+.++++.+++++|+++  +.+++++|||++++.++.+
T Consensus         7 ~~~~pgP~~~~~~~~~a~~~~~-~~~----------~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~   75 (368)
T PRK13479          7 LLLTPGPLTTSRTVREAMLRDW-GSW----------DDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGS   75 (368)
T ss_pred             eeecCCCCCCCHHHHHHhCCCC-CCC----------ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHh
Confidence            3557778888999998887754 211          11233689999999999999965  3588999999999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEeccccccccccCh
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~~~G~~~~l  215 (457)
                      +.    .+++.+++....+++.. ....++..|.+++.++.+.++.+|++++++++++  ++++|++++++|++|.+.|+
T Consensus        76 l~----~~~~~vlv~~~~~~~~~-~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~~~  150 (368)
T PRK13479         76 LV----PRDGKVLVPDNGAYGAR-IAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILNPL  150 (368)
T ss_pred             cc----CCCCeEEEEeCCchHHH-HHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCccccccCH
Confidence            97    78888887665554432 1244456699999999987778999999999864  45789999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ-------  287 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-------  287 (457)
                      ++|.++|+++|+++++|+++++|..++++..+++|++++|+|| ++||+|+|+++++++.++++......+..       
T Consensus       151 ~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (368)
T PRK13479        151 DEIAAVAKRHGKRLIVDAMSSFGAIPIDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLDLYDQWA  230 (368)
T ss_pred             HHHHHHHHHcCCEEEEEcccccCCccccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeecHHHHHh
Confidence            9999999999999999999999988888888899999999999 67899999999998766655433211100       


Q ss_pred             ---ccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-
Q 040741          288 ---ERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-  361 (457)
Q Consensus       288 ---~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  361 (457)
                         ..+....+++.+.+.++.++++.+.+  ++++..+++.++++++++.|.+ + ++.+..++....+.++.+.++.. 
T Consensus       231 ~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~  308 (368)
T PRK13479        231 YMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRA-L-GFEPLLDAEIQSPIIVTFHAPADP  308 (368)
T ss_pred             hhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCchhcCceEEEEECCCCC
Confidence               01122237888899999999987754  3788889999999999999998 5 77766544333445566665432 


Q ss_pred             --cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          362 --EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       362 --~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                        +..++...|  +||.+.+|..+                    ..+.+|+++..+++++|+++++++|++++++++
T Consensus       309 ~~~~~~l~~~L~~~gi~v~~g~~~--------------------~~~~iRis~~~~~t~edi~~~l~~L~~~l~~~~  365 (368)
T PRK13479        309 AYDFKEFYERLKEQGFVIYPGKLT--------------------QVDTFRIGCIGDVDAADIRRLVAAIAEALYWMG  365 (368)
T ss_pred             CcCHHHHHHHHHHCCEEEecCCCC--------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence              345666666  69988765321                    126899998778899999999999999987653

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=100.00  E-value=7.5e-33  Score=279.36  Aligned_cols=351  Identities=15%  Similarity=0.184  Sum_probs=265.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEe---CChHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFT---SGATESNNVSIK  136 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t---~g~T~a~~~al~  136 (457)
                      .++.+.++|.+++++...+.+.|  |||++ .|..|....+.+++ +++.+++++|++++++.++   +|||+|+++++.
T Consensus        40 ~~sen~~s~~v~~~~~~~l~~~y~~g~p~s-~~~~g~~~~~~iE~~ar~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~  118 (452)
T PTZ00094         40 IASENFTSRAVLECLGSCFTNKYAEGLPGN-RYYGGNEVVDKIENLCQKRALEAFGLDPEEWGVNVQPYSGSPANFAVYT  118 (452)
T ss_pred             ecccccCCHHHHHHhcchhhccccCCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCcccceeecCCCchHHHHHHHHH
Confidence            34566899999999999999888  89987 56667666677774 8999999999988887777   799999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh-------cCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ-------EGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNE  208 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~-------~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~  208 (457)
                      ++.    ++|++|+++..+|.++...+..++.       .++++..++++.+|.+|++++++++++ +++++++.  ++.
T Consensus       119 al~----~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~~~~~lvi~~--~s~  192 (452)
T PTZ00094        119 ALL----QPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKAFRPKLIIAG--ASA  192 (452)
T ss_pred             Hhc----CCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHHhCCCEEEEe--CCC
Confidence            997    8999999999999998765432211       124555666777799999999999954 56677653  345


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC---CcccEEEecccc-ccCCCCceEEEEecCCCccccccccC
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK---WNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~---~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~  284 (457)
                      +|...|+++|.++|+++|+++++|++|++|..+.+...   .++|++++|+|| ++||.| |+++++++..+.+.+....
T Consensus       193 ~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~~~~~~~~~l~~~~~~  271 (452)
T PTZ00094        193 YPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIFYRKKVKPDIENKINE  271 (452)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEEEecccchHHHHhhcc
Confidence            99999999999999999999999999999988765422   268999999999 568997 8888877544333222111


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                      ... . ...|+++...++++.++++++.. +.+++.++..++++++.+.|.+ . ++.+..+........+.+...+.++
T Consensus       272 ~~~-p-~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~-~-g~~v~~~~~~~~~~~v~~~~~~~~~  347 (452)
T PTZ00094        272 AVF-P-GLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEK-R-GYDLVTGGTDNHLVLVDLRPFGITG  347 (452)
T ss_pred             ccC-C-CCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-C-CcEEecCCCCCceEeecCCcCCCCH
Confidence            000 0 12367888899999999999854 6788899999999999999988 4 7777653322223333444455566


Q ss_pred             hHHHhcc--cCeEe-cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC----HHHHHHHHHHHHHHHHHHHhc
Q 040741          364 ESLLMGL--KEVAV-SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT----EAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       364 ~~~~~~l--~~i~~-~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t----~edid~~~~~l~~~~~~~~~~  436 (457)
                      ..+...|  +||.+ ..+..|....               ...+.||++++.+++    ++||+++++.|.+.++....+
T Consensus       348 ~~~~~~L~~~gI~vs~~~~p~~~~~---------------~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~  412 (452)
T PTZ00094        348 SKMEKLLDAVNISVNKNTIPGDKSA---------------LNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEI  412 (452)
T ss_pred             HHHHHHHHHCCcEEecccCCCCCcC---------------CCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence            7777776  58888 4555554211               123799999988776    999999999999999976665


Q ss_pred             ChhH
Q 040741          437 SPLY  440 (457)
Q Consensus       437 ~~~~  440 (457)
                      ++.+
T Consensus       413 ~~~~  416 (452)
T PTZ00094        413 QKQV  416 (452)
T ss_pred             hhhc
Confidence            5555

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=100.00  E-value=2.7e-33  Score=274.36  Aligned_cols=335  Identities=16%  Similarity=0.139  Sum_probs=246.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchh---hhHHHHHHHHHHHHHHHhCC-CCCcEEEeCC-hHHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFG---WESEVAVETARSQIADLIGA-SPKEIIFTSG-ATESNNVSIKG  137 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g-~T~a~~~al~~  137 (457)
                      ++++.+.|++|+++|.+++.... |++++.+..+   ..+.+.++++|+.+++++|+ ++++++||+| +|+|++.++.+
T Consensus         4 ~pGp~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~   82 (355)
T cd00611           4 SAGPAALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLN   82 (355)
T ss_pred             CCCCCCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHh
Confidence            46788999999999999987644 8887777766   46668999999999999998 4567999988 99999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCC-C-HHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIV-N-LDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~-d-~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      +... .+++++|++....|..    ...+++.|+++++++.+.++.. + .+..+..+++++++|+++|..|.+|...+ 
T Consensus        83 l~~~-~~~~~~i~~g~~~~~~----~~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG~~~~-  156 (355)
T cd00611          83 LLGD-KGTADYVVTGAWSAKA----AKEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHGVEFD-  156 (355)
T ss_pred             cCCC-CCeEEEEECCHHHHHH----HHHHHhcCCCcEEEecccccCCCCCCCHhhcCCCCCCCEEEEeCCcccccEEcc-
Confidence            8621 1366777764444422    3445666999999998755322 4 33344556789999999999999999843 


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc---c--ccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG---Q--ERG  290 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~---~--~~~  290 (457)
                          ++++.||+++++|++|++|..++++++++  +.+.|.||++||+|+|+++++++..+++.+......   .  ...
T Consensus       157 ----~i~~~~g~~~~VDa~qs~g~~~idv~~~~--~~~ss~~K~lGP~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (355)
T cd00611         157 ----EVPDTGGVPLVADMSSNILSRPIDVSKFG--VIYAGAQKNLGPAGVTVVIVRKDLLGKARKITPSMLNYKTHADNN  230 (355)
T ss_pred             ----eecccCCCeEEEEccccccCCCCCHHHhC--EEEeecccccCCCceEEEEECHHHHhhcccCCCCcccHHHHHhcC
Confidence                45566999999999999999999998755  555668999999999999999987777665422111   0  112


Q ss_pred             cccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCCCCcccceEEEEEccccchHHH
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAYVEGESLL  367 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (457)
                      ...+|||+..++++.++++++.+  +++++.++.+++++++++.|++ +|++. ...++..+.+.++.|.+++.   .+.
T Consensus       231 ~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~vvsf~~~~~---~l~  306 (355)
T cd00611         231 SLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDN-SNGFYRGPVDKRARSRMNVPFRLGKE---ELE  306 (355)
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CccccccCCCHHHcCceEEEEEcCCh---hhh
Confidence            23689999999999999999876  4999999999999999999999 87852 11112233344466665543   111


Q ss_pred             hcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          368 MGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       368 ~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ..+.++.++.|.. .....         +     ..+.+|+|++.++|+||||+++++|+++
T Consensus       307 ~~~~~~~~r~G~~-~~~~~---------~-----~~g~vR~S~~~~nt~edi~~l~~al~~~  353 (355)
T cd00611         307 KEFLKEAEAAGMI-GLKGH---------R-----SVGGIRASIYNALSLEGVQALADFMKEF  353 (355)
T ss_pred             HHHHHHHHHCCCc-ccCCC---------c-----ccCeEEEEccCCCCHHHHHHHHHHHHHH
Confidence            2211233334432 11100         0     1268999999999999999999999884

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=100.00  E-value=1.7e-32  Score=270.81  Aligned_cols=336  Identities=15%  Similarity=0.100  Sum_probs=253.3

Q ss_pred             CCcEEecCCCCCCCCHH-HHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeC-ChHHHHH
Q 040741           56 GRPLYLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTS-GATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~-v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~-g~T~a~~  132 (457)
                      ....||+.+ ++.++++ |++++...+.   ++.|+     +..+.+.++++++.+++++|++ +++++|++ |||++++
T Consensus        11 ~~~~~f~~G-p~~~~~~~v~~a~~~~~~---~~~hr-----~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~   81 (378)
T PRK03080         11 PADPRFSSG-PCKKRPGWQLEALADALL---GRSHR-----QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWE   81 (378)
T ss_pred             CCCCCcCCC-CcCCChHHHHHHHHhhhc---ccCcC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHH
Confidence            335677664 5555555 9999987643   22222     3467789999999999999985 34688875 8999999


Q ss_pred             HHHHHhhhhhcCC-CCEEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          133 VSIKGVMHFYKDK-KRHVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       133 ~al~~~~~~~~~~-g~~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      +++.++.    ++ ++.+++ ..+|.+.+.. ...+..|. +++.++.+.++.+|+++++    . +++|+++|++|.+|
T Consensus        82 ~~~~~l~----~~~~~~vi~-~g~f~~~~~~-~~~~~~g~~~v~~~~~~~g~~~d~~~i~----~-~~~V~~~h~~t~tG  150 (378)
T PRK03080         82 MALWSLL----GARRVDHLA-WESFGSKWAT-DVVKQLKLEDPRVLEADYGSLPDLSAVD----F-DRDVVFTWNGTTTG  150 (378)
T ss_pred             HHHHhcC----CCCcceEEE-eCHHHHHHHH-HHHhhcCCCCceEeccCCCCCCCHhhcC----C-CCCEEEEecCCccc
Confidence            9999986    53 556665 5688776542 12244588 9999998877788888743    2 56799999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccccCCc---
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGG---  286 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~---  286 (457)
                      .+.|+++|++  +++|+++++|++|++|..++++.+  +|++++|+||+ +||+|+|+++++++.++++.+...++.   
T Consensus       151 ~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~--iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~  226 (378)
T PRK03080        151 VRVPVARWIG--ADREGLTICDATSAAFALPLDWSK--LDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK  226 (378)
T ss_pred             eeccchhhcc--ccCCCeEEEecccccccCCCCHHH--CcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch
Confidence            9999999999  889999999999999999999986  79999999995 568999999999988877776543321   


Q ss_pred             ----------ccccc---ccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCcc
Q 040741          287 ----------QERGI---RSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRY  350 (457)
Q Consensus       287 ----------~~~~~---~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~  350 (457)
                                ....+   ..+|+++..+.++.++++++.+  +++++.++.+++++++++.|++ ++++.++.. +..+.
T Consensus       227 ~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s  305 (378)
T PRK03080        227 FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEK-TPWATPLVADPATRS  305 (378)
T ss_pred             hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCcccccCCccccC
Confidence                      11112   2346777778888999999986  5899999999999999999999 777777643 33333


Q ss_pred             cceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          351 IGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       351 ~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      ..++.+.++..   ...++...+  +++.+..|.++.                   ..+.+|++++.+++.+||++++++
T Consensus       306 ~~i~~~~~~~~~~~~~~~~~~~l~~~~i~v~~g~~~~-------------------~~~~vRis~~~~~t~~di~~l~~a  366 (378)
T PRK03080        306 NTSVTLDFVDAQAAVDAAAVAKLLRENGAVDIEPYRD-------------------APNGLRIWCGPTVEPADVEALTPW  366 (378)
T ss_pred             ccEEEEEcCCchHHHHHHHHHHHHHcCCeeccccccC-------------------CCCcEEEecCCCCCHHHHHHHHHH
Confidence            45566665541   122344344  577777664321                   127899999999999999999999


Q ss_pred             HHHHHHHHHh
Q 040741          426 TVKQVEKLRE  435 (457)
Q Consensus       426 l~~~~~~~~~  435 (457)
                      |++++++++.
T Consensus       367 l~~~~~~~~~  376 (378)
T PRK03080        367 LDWAFERLKA  376 (378)
T ss_pred             HHHHHHHHhh
Confidence            9999988774

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=100.00  E-value=6.2e-31  Score=258.80  Aligned_cols=328  Identities=17%  Similarity=0.224  Sum_probs=247.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK--EIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~t~g~T~a~~~al~~~~~  140 (457)
                      .+++..+++.+.+++.... ..+          .....+...++++.+++++|++++  .+++++|||+++..++.++. 
T Consensus         4 ~p~p~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~~-   71 (355)
T TIGR03301         4 TPGPLSTSATVRDAMLVDW-CHW----------DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSLV-   71 (355)
T ss_pred             cCCCCCCCHHHHHHhhhhc-cCC----------CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhcc-
Confidence            3567778899999988732 111          112237899999999999999765  47899999999999999987 


Q ss_pred             hhcCCCCEEE-EcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEeccccccccccChHH
Q 040741          141 FYKDKKRHVI-TTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       141 ~~~~~g~~vi-~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~~~G~~~~l~~  217 (457)
                         .+++.++ +...+|....  ...++..|.+++.++.+.++.+|++++++++++  +.+++++++++|++|.+.|+++
T Consensus        72 ---~~~~~vi~~~~~~~~~~~--~~~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~~  146 (355)
T TIGR03301        72 ---PRDGKLLVLINGAYGERL--AKICEYLGIPHTDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLEA  146 (355)
T ss_pred             ---CCCCeEEEECCCchhhHH--HHHHHHcCCceEEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHHH
Confidence               5666655 5555555422  122344599999999887788999999999974  4567888999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccccCCc----------
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGG----------  286 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~----------  286 (457)
                      |.++|++|++++++|+++++|..++++..+++|++++|++|+ +|++|+|+++++++.++++........          
T Consensus       147 i~~l~~~~~~~livD~~~s~g~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (355)
T TIGR03301       147 IAKVARSHGAVLIVDAMSSFGAIPIDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYDQWAYM  226 (355)
T ss_pred             HHHHHHHcCCEEEEEeccccCCcccchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHHHHHHh
Confidence            999999999999999999999888888888999999999994 688899999999876655442111100          


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc---c
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKK-E-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY---V  361 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  361 (457)
                      ...+...++++...+.++..+++.+.+ + +++..++++++++++.+.|++ + ++.+..+++...+.++.+.++.   .
T Consensus       227 ~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~~~~~~  304 (355)
T TIGR03301       227 EKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRA-L-GFQPLLPERWQSPIIVSFLYPDDPDF  304 (355)
T ss_pred             hhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHH-c-CCeeecCCCCCCCcEEEEECCCCCcc
Confidence            001223457888888999899987765 3 788899999999999999988 5 6766554333333344455543   2


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +..++...+  +||.+.+|..+.                    .++|||++..+++.+|++++++.|+++
T Consensus       305 ~~~~~~~~l~~~gi~i~~~~~~~--------------------~~~iRis~~~~~~~~~i~~~~~~l~~~  354 (355)
T TIGR03301       305 DFDDFYQELKERGFVIYPGKLTL--------------------ADTFRIGTIGEIDAADIERLLEAIKDA  354 (355)
T ss_pred             hHHHHHHHHHHCCEEEECCcccc--------------------ccEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            334566666  688887664210                    168999998889999999999999875

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=100.00  E-value=1.1e-30  Score=258.70  Aligned_cols=332  Identities=19%  Similarity=0.185  Sum_probs=249.2

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      +|+. .+++..+.+.+++.+++....+++..  +   ..+.+...++++++++++|+++.++++++|||+++..++.++.
T Consensus        24 ~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~   97 (371)
T PRK13520         24 ILSS-MCTEPHPIARKAHEMFLETNLGDPGL--F---PGTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAAR   97 (371)
T ss_pred             eeee-eecCchHHHHHHHHHHHhcCCCCccc--C---ccHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHH
Confidence            3444 35678888999999998765555432  1   1344667899999999999987779999999999999988776


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG  219 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~  219 (457)
                      .....++++|+++..+|.++...++..   |.+++.++.+.++.+|++++++++++++++|++.+++|++|.+.|+++|.
T Consensus        98 ~~~~~~~~~vl~~~~~h~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~I~  174 (371)
T PRK13520         98 NLAKAEKPNIVVPESAHFSFDKAADML---GVELRRAPLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPELS  174 (371)
T ss_pred             hhccCCCceEEecCcchHHHHHHHHHc---CceEEEecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHHHH
Confidence            321135789999999999987776555   99999999888889999999999998888888888889999999999999


Q ss_pred             HHHHhcCCcEEEehhhhcCCCc-------ccCCCCcccEEEecccccc-CCCCceEEEEecC-CCcccc---ccccCCcc
Q 040741          220 QICKEFKIPFHTDAAQALGKIP-------VDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRR-PRIRVE---PLINGGGQ  287 (457)
Q Consensus       220 ~l~~~~~v~li~D~a~~~g~~~-------~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~-~~~~~~---~~~~~~~~  287 (457)
                      ++|+++|+++|+|++|+.+..+       ++....++|++++|+||+. +|.|+|+++++++ ....+.   +...+.. 
T Consensus       175 ~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~~~~~~~~~-  253 (371)
T PRK13520        175 KIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVDTPYLTSKK-  253 (371)
T ss_pred             HHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhcccCccccCCC-
Confidence            9999999999999999865432       2333457899999999964 4666787877554 333332   2221111 


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                       .....|+.+...+.++.++++.+.+ ++++..++..++++++.+.|.+ + ++.+...+   ..+++.+.++  +..++
T Consensus       254 -~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~~~~v~~~~~--~~~~v  325 (371)
T PRK13520        254 -QATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKE-R-GFEPVIEP---VLNIVAFDDP--NPDEV  325 (371)
T ss_pred             -CcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHh-C-CCEEecCC---CceEEEEecC--CHHHH
Confidence             1122356666778888888876644 5788999999999999999998 5 77743322   2445555554  45666


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ...|  +||.+....                      ..+.+||+++.++|++||+++++.|+++++
T Consensus       326 ~~~L~~~gi~v~~~~----------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        326 REKLRERGWRVSVTR----------------------CPEALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             HHHHHHCCceeccCC----------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            6666  577765321                      116899999999999999999999998765

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=100.00  E-value=1.2e-30  Score=257.17  Aligned_cols=331  Identities=14%  Similarity=0.177  Sum_probs=242.4

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhc
Q 040741           64 QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYK  143 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~  143 (457)
                      +...++.+++.+++.++... +++|++-.+..+....+.+.++++.+++++|+  +++++++|+|+++.+++.++.    
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~~i~~~~g~t~al~~~l~~~~----   80 (361)
T cd06452           8 QRGGRLTPEARKALIEWGDG-YSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--DEARVTPGAREGKFAVMHSLC----   80 (361)
T ss_pred             hcCCCCCHHHHHHHHHHhcc-cCCccccccccccccCchHHHHHHHHHHHcCC--ceEEEeCCHHHHHHHHHHHhc----
Confidence            34568999999999999843 56765534444555557899999999999998  469999999999999999987    


Q ss_pred             CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC--CCCHHHHHHhcC-------CCceEEEEeccccccccccC
Q 040741          144 DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG--IVNLDELRAAIR-------PDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       144 ~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~--~~d~~~le~~i~-------~~t~li~i~~~~~~~G~~~~  214 (457)
                      ++|++|+++.+.|.+...+++.   .|++++.++.+.++  .+|+++++++++       +++++|++++++|++|.+.|
T Consensus        81 ~~gd~Vl~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~  157 (361)
T cd06452          81 EKGDWVVVDGLAHYTSYVAAER---AGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD  157 (361)
T ss_pred             CCCCEEEEcCCcchHHHHHHHh---cCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc
Confidence            8999999999999998766544   49999999988654  899999999886       37899999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCcccc-ccc
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQER-GIR  292 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~-~~~  292 (457)
                      +++|.++|+++|+++++|+||+.|..+++...++.|++++|+||+++ +.++|+++++++..+++......++... ...
T Consensus       158 ~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~  237 (361)
T cd06452         158 AKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKELGADFIVGSGHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELL  237 (361)
T ss_pred             HHHHHHHHHHcCCeEEEECCcccCCcCCCHHHcCCCEEEecCCccccCCCCeEEEEECHHHHHHHhccccccccceeeee
Confidence            99999999999999999999999988887777789999999999654 5579999998876666543222111100 111


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---------cc
Q 040741          293 SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---------EG  363 (457)
Q Consensus       293 ~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  363 (457)
                      .++.....+.++.++++...+.++ ..++..++++++.+.|.+ +++++++++... ..+++.+..+..         ++
T Consensus       238 ~~~~~~~~~~~~~~al~~~~~~~~-~~~~~~~~~~~l~~~L~~-l~g~~v~~~~~~-~~n~~~~~~~~~~~~~~~~~~~~  314 (361)
T cd06452         238 GCTLRGAPLVTLMASFPHVKERVK-RWDEEVEKARWFVAELEK-IEGIKQLGEKPK-NHDLMFFETPSFDEIAKKHKRRG  314 (361)
T ss_pred             ccccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc-CCCeEEECCCCC-CCceEEEEcCCcchhhhhccccc
Confidence            223333445555556655544433 334445566899999999 889988753322 344444444311         12


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ..+...|  +||....                      ....+.+|++... .++||++.++++|+++.
T Consensus       315 ~~~~~~L~~~gI~~~~----------------------~~~~~~~ri~~~g-~~~e~~~~l~~al~~~~  360 (361)
T cd06452         315 YFLYSELKKRGIHGIK----------------------PGLTRYFKLSTYG-LTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             hhHHHHHHHcCceEEc----------------------CCCceEEEEEecC-CCHHHHHHHHHHHHHHh
Confidence            2455555  4665310                      1112588999844 58999999999998654

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=100.00  E-value=4e-31  Score=257.09  Aligned_cols=327  Identities=18%  Similarity=0.156  Sum_probs=245.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchh---hhHHHHHHHHHHHHHHHhCCCC-CcEEEeCC-hHHHHHHHHHHhhhhh
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFG---WESEVAVETARSQIADLIGASP-KEIIFTSG-ATESNNVSIKGVMHFY  142 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g-~T~a~~~al~~~~~~~  142 (457)
                      ..|.+|++++.+++.... |.+.+.+..+   ..+.+.++++++.++++++.+. .+++|++| ||+|+++++.++.   
T Consensus         2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~---   77 (349)
T TIGR01364         2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLL---   77 (349)
T ss_pred             CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcC---
Confidence            478899999999998655 6666666444   3445899999999999999743 35777766 9999999999998   


Q ss_pred             cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          143 KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG----ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       143 ~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                       .+++++++-.....+... .+.++..|. +..+..+    ....+|+++++  +++++++|+++|..|.||+..|    
T Consensus        78 -~~~~~~l~i~~G~fg~r~-~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~th~ETstGv~~~----  148 (349)
T TIGR01364        78 -AEGKVADYIVTGAWSKKA-AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--ISEDAAYVHYCANETIHGVEFR----  148 (349)
T ss_pred             -CCCCeEEEEECCHHHHHH-HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CCCCCCEEEEcCCCCcccEecc----
Confidence             677776654444433332 466677798 7777654    23356667665  4568899999999999999887    


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc-----ccccccc
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG-----QERGIRS  293 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~-----~~~~~~~  293 (457)
                       ++++.+++++++|+++++|..++++++  .|++++|+||++||+|+|++++++++.+++.+......     ......+
T Consensus       149 -~l~~~~~~l~iVDavss~g~~~id~~~--~d~~~~ssqK~lgP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (349)
T TIGR01364       149 -ELPDVKNAPLVADMSSNILSRPIDVSK--FGLIYAGAQKNIGPAGLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMY  225 (349)
T ss_pred             -eecccCCCeEEEEccccccCccCCHHH--ccEEEEecccccCCCceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCC
Confidence             677788999999999999999999987  45999999998899999999999988877665432211     0113345


Q ss_pred             CCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCcccceEEEEEcccc-chHHHhc
Q 040741          294 GTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRYIGNLNLSFAYVE-GESLLMG  369 (457)
Q Consensus       294 ~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~  369 (457)
                      +||++..++++.++++++.+  +++++.++.+++++++++.|++ ++++..... +..+.+.++.|.+++.. ..++...
T Consensus       226 ~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~-~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~~~~  304 (349)
T TIGR01364       226 NTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDN-SNGFYRNPVDPRNRSRMNVVFTLGNEELEKRFLKE  304 (349)
T ss_pred             CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCCeeccCCCHHHcCCeEEEEecCChhHhHHHHHH
Confidence            89999999999999999876  4999999999999999999999 878655532 23344455666655331 1233233


Q ss_pred             c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          370 L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       370 l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +  +|+++..|..                     ..+.+|+|+..++|.||||+++++|+++.++
T Consensus       305 ~~~~Gi~~~~~~~---------------------~~g~vRvS~~~~nt~edid~l~~al~~~~~~  348 (349)
T TIGR01364       305 AEERGLVSLKGHR---------------------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK  348 (349)
T ss_pred             HHHCCCcccCCcc---------------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence            3  4554433321                     1268999999999999999999999987653

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=100.00  E-value=4.6e-31  Score=257.98  Aligned_cols=339  Identities=16%  Similarity=0.127  Sum_probs=248.1

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccc---hhhhHHHHHHHHHHHHHHHhCCCC-CcE-EEeCChHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHL---FGWESEVAVETARSQIADLIGASP-KEI-IFTSGATESNNV  133 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~la~~~g~~~-~~i-~~t~g~T~a~~~  133 (457)
                      .+|-++|++.+|++|+++|...+.... +.+.+.+.   ....+.+.+.++++.+++++|.+. .++ +++++||.+++.
T Consensus         4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea   82 (360)
T PRK05355          4 VYNFSAGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAM   82 (360)
T ss_pred             eeeccCCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHH
Confidence            467788999999999999999875432 32322332   234455899999999999999732 345 555779999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHH-hcCCCceEEEEecccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRA-AIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~-~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++.++.    .+++++++-.....+.. ..+.++..|.. ..+..+. .+..+..++++ ++++++++|+++|..|.||+
T Consensus        83 ~~~nl~----~~g~~~l~i~~G~fg~r-~~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~V~~th~eTstGv  156 (360)
T PRK05355         83 VPMNLL----GGGKKADYVDTGSWSKK-AIKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLSDDAAYVHYTSNETIDGT  156 (360)
T ss_pred             HHHhcC----CCCCeEEEEECCHHHHH-HHHHHHHhCCc-eEEecccccCCCCCCChhhccCCCCCCEEEEccCCCcceE
Confidence            999998    67766654333322222 24556666865 6666553 56666666666 78888999999999999999


Q ss_pred             cc-ChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC-----
Q 040741          212 IQ-PMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG-----  285 (457)
Q Consensus       212 ~~-~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~-----  285 (457)
                      .. |+++|      +|+++++|+++++|..+++++++  |++++|+||++||+|+|++++++++.+++.+...++     
T Consensus       157 ~~~~i~~i------~g~l~vVDavss~g~~~idv~~~--d~~~~ssqK~lgP~Glg~l~~s~~~l~~~~~~~~~~~~~~~  228 (360)
T PRK05355        157 EFHELPDT------GDVPLVADMSSDILSRPIDVSKF--GLIYAGAQKNIGPAGLTIVIVREDLLGRALPSIPSMLDYKT  228 (360)
T ss_pred             ecCccccc------CCCcEEEEcCccccCccCCHHHc--cEEEEeccccccCCceEEEEECHHHHhhcccCCChHHHHHH
Confidence            98 77766      89999999999999999999875  699999999889999999999999887776632111     


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-c
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-E  362 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  362 (457)
                      ........+|||...++++.++++++.+  +++++.++.+++++++++.|++ ++.+..+.++..+.+.++.|.++.. .
T Consensus       229 ~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~v~sf~~~~~~~  307 (360)
T PRK05355        229 HADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDS-SDFYRNPVAPEDRSRMNVPFTLADEEL  307 (360)
T ss_pred             HHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCChhhcCCcEEEEEcCChHH
Confidence            0122345689999999999999999876  4999999999999999999999 7643333333334445566665542 1


Q ss_pred             chHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       363 ~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..++..    +..+.|..|....            .   ..+.+|+|+..++|.||||+++++|+++++.
T Consensus       308 ~~~~~~----~~~~~Gi~~~~~~------------~---~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~  358 (360)
T PRK05355        308 DKKFLA----EAKAAGLVGLKGH------------R---SVGGMRASIYNAMPLEGVQALVDFMKEFERR  358 (360)
T ss_pred             HHHHHH----HHHHCCCcccCCC------------C---ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence            122222    3334444442210            0   1278999999999999999999999998764

>PRK06225 aspartate aminotransferase; Provisional

Probab=100.00  E-value=2.6e-30  Score=256.41  Aligned_cols=342  Identities=15%  Similarity=0.149  Sum_probs=245.7

Q ss_pred             cccccCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           50 KGVRIAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+...++.|.|+.+.+. ++++++.+++.+.+.....+        .|.......++++++++++|++++++++|+|+|
T Consensus        22 ~~~~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~y~~~~g~~~lr~~ia~~l~~~~~~v~~~~g~t   93 (380)
T PRK06225         22 DYVFKDKEMIWMGQNTNHLGPHEEVREAMIRCIEEGEYC--------KYPPPEGFPELRELILKDLGLDDDEALITAGAT   93 (380)
T ss_pred             HHHhhcCCeEEccCCCCCCCCCHHHHHHHHHHHhcCCCC--------CCCCCcchHHHHHHHHHhcCCCCCcEEEeCCHH
Confidence            334455778889876665 67899999999988642111        111123578899999999999988999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      +|+.+++.+++    .+|+.|++.++.|......++..   |.+++.++.+.   ++.+|++++++++++++++++++++
T Consensus        94 ~al~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p  166 (380)
T PRK06225         94 ESLYLVMRAFL----SPGDNAVTPDPGYLIIDNFASRF---GAEVIEVPIYSEECNYKLTPELVKENMDENTRLIYLIDP  166 (380)
T ss_pred             HHHHHHHHHhc----CCCCEEEEcCCCCcchHHHHHHh---CceEEeeccccccCCccCCHHHHHhhcCCCceEEEEeCC
Confidence            99999999987    78999999999998776665555   99999998742   3579999999999999999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhc---CCCcccCCCCcccEEEeccccccCCCC--ceEEEEecCCCcc
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQAL---GKIPVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIR  277 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~---g~~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~  277 (457)
                      +||+|.+.+   +++|.++|+++|+++|+|+++.-   +............+++.|++|.+|++|  +|+++++++.+++
T Consensus       167 ~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~G~RiG~i~~~~~l~~~  246 (380)
T PRK06225        167 LNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLAAEYAPEHTVTSYSFSKIFGMAGLRIGAVVATPDLIEV  246 (380)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCchhhcCCCCEEEEeechhhcCCccceeEEEecCHHHHHH
Confidence            999999877   88899999999999999999852   221111111234677889999888777  7999998876666


Q ss_pred             ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                      +.+...+        ....+.....++..++....+.+++..+..+++.+.+.+.|++ ++++.+...+.  ..+++.+.
T Consensus       247 ~~~~~~~--------~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~--~g~~~~~~  315 (380)
T PRK06225        247 VKSIVIN--------DLGTNVIAQEAAIAGLKVKDEWIDRIRRTTFKNQKLIKEAVDE-IEGVFLPVYPS--HGNMMVID  315 (380)
T ss_pred             HHHHHhc--------ccCCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHh-CcCCccccCCC--CCeEEEEE
Confidence            5543211        1123444444444444332333556666677778888888888 66654321111  13444555


Q ss_pred             Ec--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          358 FA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       358 ~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ++  ..+..++...|  +||.+.+|..|..                ..+.+++|++++.  ++|++++++++|+++++.+
T Consensus       316 ~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~----------------~~~~~~iR~s~~~--~~e~l~~~~~~l~~~~~~~  377 (380)
T PRK06225        316 ISEAGIDPEDLVEYLLERKIFVRQGTYTSK----------------RFGDRYIRVSFSI--PREQVEVFCEEFPDVVETL  377 (380)
T ss_pred             cccccCCHHHHHHHHHHCCEEEcCCcccCc----------------CCCCceEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence            53  24566777666  6899998865532                1123799999975  6899999999999999988


Q ss_pred             Hh
Q 040741          434 RE  435 (457)
Q Consensus       434 ~~  435 (457)
                      |.
T Consensus       378 ~~  379 (380)
T PRK06225        378 RT  379 (380)
T ss_pred             hc
Confidence            74

>PLN02483 serine palmitoyltransferase

Probab=99.98  E-value=1.4e-30  Score=264.02  Aligned_cols=349  Identities=16%  Similarity=0.206  Sum_probs=252.1

Q ss_pred             CCCCcccccceecccccCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC
Q 040741           38 YEPQEDQNGITLKGVRIAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA  116 (457)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~  116 (457)
                      |+++++..+...+.+.+-..+.||+++.+. .+++.+.+++.++.....      ..+..++..+.+.++|+.+|+++|.
T Consensus        88 ~~~~~~~~~~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~------~sr~~~g~~~~~~ele~~lA~~~g~  161 (489)
T PLN02483         88 DNNKTLKRTTKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTC------SSRVDGGTTKLHRELEELVARFVGK  161 (489)
T ss_pred             CCCceEEecCCCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCC------ccccccCCcHHHHHHHHHHHHHhCC
Confidence            567777677777888899999999998765 577888988888643211      1122233447899999999999996


Q ss_pred             CCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--
Q 040741          117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR--  194 (457)
Q Consensus       117 ~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--  194 (457)
                      + +.++|++ |+.++..++.+++    ++||+|++++++|++....++..   |++++.++.+     |++++++.++  
T Consensus       162 ~-~ai~~~~-G~~an~~~i~al~----~~Gd~Vi~d~~~h~s~~~~~~~~---Ga~v~~~~~~-----d~~~le~~l~~~  227 (489)
T PLN02483        162 P-AAIVFGM-GYATNSTIIPALI----GKGGLIISDSLNHNSIVNGARGS---GATIRVFQHN-----TPSHLEEVLREQ  227 (489)
T ss_pred             C-cEEEECC-HHHHHHHHHHHhC----CCCCEEEEcchhhHHHHHHHHHc---CCeEEEEeCC-----CHHHHHHHHHhh
Confidence            4 4466655 6667777788887    89999999999999999887665   9999999865     5666665543  


Q ss_pred             -----CCc------eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEe
Q 040741          195 -----PDT------GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSL  254 (457)
Q Consensus       195 -----~~t------~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~  254 (457)
                           +++      .+|+++++.++.|.+.++++|.++|++||+++++|++|+.|...         .++...+.|+++.
T Consensus       228 i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~  307 (489)
T PLN02483        228 IAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMG  307 (489)
T ss_pred             hhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEE
Confidence                 222      37778888899999999999999999999999999999865431         2233346799999


Q ss_pred             ccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHH
Q 040741          255 SGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-----EMDYDHKRITALHDRL  329 (457)
Q Consensus       255 s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-----~~~~~~~~~~~~~~~l  329 (457)
                      |++|.+|+.| |+++++++.++.+.....+.     ...++.+++.++++.++++.+..     ...+..++++++++++
T Consensus       308 SfSKs~g~~G-G~i~~~~~li~~l~~~~~~~-----~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l  381 (489)
T PLN02483        308 TFTKSFGSCG-GYIAGSKELIQYLKRTCPAH-----LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFF  381 (489)
T ss_pred             ecchhcccCc-eEEEcCHHHHHHHHHhCccc-----cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHH
Confidence            9999999887 99998887766665433221     11234555666667777876652     1345678899999999


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ++.|++ + ++.+.++...   +.+.+.+. .....++...|  +||.+.+..++..                ....+.+
T Consensus       382 ~~~L~~-~-G~~v~~~~~s---p~~~l~l~~~~~~~~~~~~Ll~~GI~v~~~~fp~~----------------p~~~~~v  440 (489)
T PLN02483        382 RSELQK-M-GFEVLGDNDS---PVMPIMLYNPAKIPAFSRECLKQNVAVVVVGFPAT----------------PLLLARA  440 (489)
T ss_pred             HHHHHH-C-CCcccCCCCC---CEEEEEECCHHHHHHHHHHHHHCCcEEeeeCCCCC----------------CCCCceE
Confidence            999999 5 7776654332   22223222 12233454444  6888875333221                1123689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||+++..+++|||++++++|+++++.+
T Consensus       441 Ri~isa~~t~edId~~l~~L~~~~~~~  467 (489)
T PLN02483        441 RICISASHSREDLIKALEVISEVGDLV  467 (489)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998765

>PRK07179 hypothetical protein; Provisional

Probab=99.98  E-value=2.2e-30  Score=259.09  Aligned_cols=317  Identities=20%  Similarity=0.249  Sum_probs=235.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCC-CccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHS-RTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      ..|++++++.+.+.+...+++. +.+..+   .+...++++.+++++|.+.  +++++||++|++++++++.    .+++
T Consensus        69 ~~p~v~~a~~~~~~~~~~~~~~s~~~~~~---~~~~~~le~~la~~~g~~~--~~~~~sG~~An~~~l~~l~----~~g~  139 (407)
T PRK07179         69 GHPDIIKAQIAALQEEGDSLVMSAVFLHD---DSPKPQFEKKLAAFTGFES--CLLCQSGWAANVGLLQTIA----DPNT  139 (407)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCccccccCC---chHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHhC----CCCC
Confidence            4689999999999876555542 223222   2467788999999999864  7899999999999999998    7899


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHHHHHHHHhcC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFK  226 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~  226 (457)
                      +|+++...|.+....++..   |.++..++.     .|++++++++++ ++++|++++++|++|.+.|+++|.++|++||
T Consensus       140 ~v~~~~~~h~s~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~pl~~I~~l~~~~~  211 (407)
T PRK07179        140 PVYIDFFAHMSLWEGVRAA---GAQAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAPLADIVDIAEEFG  211 (407)
T ss_pred             EEEEECCcCHHHHHHHHHC---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCccccHHHHHHHHHHcC
Confidence            9999999999998877655   887766543     489999999976 5889999999999999999999999999999


Q ss_pred             CcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741          227 IPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP  297 (457)
Q Consensus       227 v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  297 (457)
                      +++|+|++|++|....         ++. .++|++++|++|.+|++ +|+++++++..+.+......     ....++.+
T Consensus       212 ~~livDea~~~g~~g~~g~g~~~~~~~~-~~vdi~~~S~sK~~g~~-~G~l~~~~~~~~~~~~~~~~-----~~~~~t~~  284 (407)
T PRK07179        212 CVLVVDESHSLGTHGPQGAGLVAELGLT-SRVHFITASLAKAFAGR-AGIITCPRELAEYVPFVSYP-----AIFSSTLL  284 (407)
T ss_pred             CEEEEECcccccCcCCCCCchHHhcCCC-CCCCEEEeechHhhhcc-CeEEEeCHHHHHHHHHhCcC-----eeeCCCCC
Confidence            9999999998765321         111 24699999999988876 79999887654443211110     12345667


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeE
Q 040741          298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVA  374 (457)
Q Consensus       298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~  374 (457)
                      +..++++.++++.... .....++++++++++++.|.+ + ++.+.+.     ..++.+.+... ....+...|  +||.
T Consensus       285 ~~~~aa~~aal~~~~~-~~~~~~~l~~~~~~l~~~L~~-~-g~~v~~~-----~~i~~l~~~~~~~~~~~~~~L~~~GI~  356 (407)
T PRK07179        285 PHEIAGLEATLEVIES-ADDRRARLHANARFLREGLSE-L-GYNIRSE-----SQIIALETGSERNTEVLRDALEERNVF  356 (407)
T ss_pred             HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCC-----CCEEEEEeCCHHHHHHHHHHHHHCCce
Confidence            7777777777777643 466788999999999999998 5 6665532     34555554321 234455555  5765


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +.  .+|.+..              ....+.|||+++..+|++||++++++|++++++.
T Consensus       357 ~~--~~~~p~~--------------~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~  399 (407)
T PRK07179        357 GA--VFCAPAT--------------PKNRNLIRLSLNADLTASDLDRVLEVCREARDEV  399 (407)
T ss_pred             Ee--eecCCCC--------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence            32  3343310              1123799999999999999999999999988764

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.98  E-value=1.5e-29  Score=249.65  Aligned_cols=338  Identities=14%  Similarity=0.164  Sum_probs=236.5

Q ss_pred             CcEEecC-CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDM-QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~-~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      +.|.|+. +..+.+.+.+.+++.++.....+...- .......+.+...++++.+|+++|+++  +++++|+++++..++
T Consensus         7 ~~~~~~~~~~~g~~~~~~~~a~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~e~lA~~~g~~~--~~i~~g~~~a~~~~~   83 (370)
T TIGR02539         7 GSINLNPLQRGGVLTEAARKALVEFGDGYSVCDFC-GGRLDQITKPPIHDFLEDLAEFLGMDE--ARVTHGAREGKFAVM   83 (370)
T ss_pred             cccccChhhhCCCCcHHHHHHHHHHhhcccccccc-ccccccccchHHHHHHHHHHHHhCCCc--eEEECChHHHHHHHH
Confidence            3445542 345588899999999987632211110 111111223567788889999999975  777899999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC-------CceEEEEeccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP-------DTGLISVMAVN  206 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~-------~t~li~i~~~~  206 (457)
                      .++.    ++|+.|+++...|.+.+.+++.   .|++++.++.+  .++.+|++++++++++       ++++|++++++
T Consensus        84 ~~l~----~~gd~Vl~~~~~h~s~~~~~~~---~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~  156 (370)
T TIGR02539        84 HALC----KEGDWVVLDGLAHYTSYVAAER---AGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVD  156 (370)
T ss_pred             HHhh----CCCCEEEECCcccHHHHHHHHH---cCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCC
Confidence            9998    8999999999999998876544   49999999986  3477899999999863       67899999999


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC-CCceEEEEecCCCccccccccCC
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~  285 (457)
                      |++|.+.|+++|.++|+++|+++++|++|+.|..+.+...+++|+++.|+||++|+ .++|+++++++.++++......+
T Consensus       157 ~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~~~di~v~s~sK~~~~~g~~G~l~~~~~~i~~l~~~~~~~  236 (370)
T TIGR02539       157 GEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEIGADFIVGSGHKSMAASGPCGVLGMSEEWEDIVLRKSRYS  236 (370)
T ss_pred             CCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhhcccccCC
Confidence            99999999999999999999999999999998766666566789999999997764 34899999988777765544322


Q ss_pred             ccccc-cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---
Q 040741          286 GQERG-IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---  361 (457)
Q Consensus       286 ~~~~~-~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  361 (457)
                      ..... ...++.......++.+++....+.+++.. +..++++++++.|++ + ++.+++... ...+++.+.++..   
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~l~~~~-~~~~~~~~l~~~L~~-~-g~~~~~~~~-s~t~~v~~~~~~~~~~  312 (370)
T TIGR02539       237 PVKEVELLGCTSRGAPIVTMMASFPHVVERVKRWD-EEVKKTRWFVAELED-I-GFIQLGQKP-KEHDLVKFETPGFHEI  312 (370)
T ss_pred             ccceeeeecccccccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-C-CcEEEccCC-CcCceEEEECCchhHH
Confidence            11110 11123333344444455554444444333 334446789999999 4 677653211 2255555555432   


Q ss_pred             ------cchHHHhcc--cCeE-ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          362 ------EGESLLMGL--KEVA-VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       362 ------~~~~~~~~l--~~i~-~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                            ....+...|  +||. +++|                       ..++||+++. ..+++|+++++++|++++++
T Consensus       313 ~~~~~~~~~~~~~~L~e~GI~~ir~~-----------------------~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~  368 (370)
T TIGR02539       313 AQKHKRRGYFLYEELKKRGIHGIRSG-----------------------QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE  368 (370)
T ss_pred             hhhhccccHHHHHHHHhCCCccccCC-----------------------cceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence                  122455555  4664 3221                       0268999984 46899999999999988764

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.98  E-value=1.6e-29  Score=248.81  Aligned_cols=338  Identities=18%  Similarity=0.187  Sum_probs=252.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCc-EEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKE-IIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~-i~~t~g~T~a~  131 (457)
                      .+.|.|..+.+. +.|+.+.+++.+.+.... .  ..++.  .+..+..+.+.+.+.+..|  .++++ ++.|+|+++|+
T Consensus        28 ~~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~-~--~Y~~~--~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al  102 (393)
T COG0436          28 EDVIDLSIGEPDFPTPEHIIEAAIEALEEGG-T--HYTPS--AGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEAL  102 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhccc-C--CCCCC--CCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHH
Confidence            457899888887 778889999999886521 0  01111  1222344444444455545  34555 99999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcCCCceEEEEeccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      .+++.++.    ++||+||++.+.|+++......+   |.+++.++++   .++.+|+++|+++++++|++|+++.||||
T Consensus       103 ~~~~~a~~----~pGDeVlip~P~Y~~y~~~~~~~---gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NP  175 (393)
T COG0436         103 FLAFLALL----NPGDEVLIPDPGYPSYEAAVKLA---GGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNP  175 (393)
T ss_pred             HHHHHHhc----CCCCEEEEeCCCCcCHHHHHHhc---CCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCC
Confidence            99999999    99999999999999999998888   9999999975   37899999999999999999999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcC---C-Cccc---CCC-CcccEEEeccccccCCCC--ceEEEEe-cCC
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALG---K-IPVD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMR-RRP  274 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g---~-~~~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~-~~~  274 (457)
                      ||.+++   +++|+++|++||++|+.|++|.--   . ....   ... ...-+.+.|+||.|+..|  +||++++ +.+
T Consensus       176 TGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGwRvG~~v~~~~~l  255 (393)
T COG0436         176 TGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGWRIGWVVGPPEEL  255 (393)
T ss_pred             cCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccccccceeEeecChHHH
Confidence            999988   788999999999999999999631   1 1111   111 134567779999888666  9999998 544


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK--KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      ++.+.....       ....+++.+...++..|++.-.  ..++...+.++++++.+.+.|.+ ++++.+..+++.  ..
T Consensus       256 ~~~~~~~~~-------~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~-~~g~~~~~~p~G--a~  325 (393)
T COG0436         256 IAALRKLKS-------YLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNE-IGGLSVVKPPEG--AF  325 (393)
T ss_pred             HHHHHHHHH-------hcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHh-cCCeeeccCCCe--eE
Confidence            444442221       1122566666777777887652  35677778999999999999999 888988875443  33


Q ss_pred             eEEEEEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          353 NLNLSFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      +++..++. .++.++...|   .||++.+|..+..              .  .++++|||++..  +.++++++++++.+
T Consensus       326 Y~~~~i~~~~d~~~f~~~Ll~~~gV~v~PG~~Fg~--------------~--~g~~~vRis~~~--~~~~l~~a~~rl~~  387 (393)
T COG0436         326 YLFPKIPELLDSEEFAKKLLEEAGVAVVPGSGFGE--------------P--PGEGYVRLSLAT--SEETLEEALRRLAR  387 (393)
T ss_pred             EEEeecCCCCCHHHHHHHHHHhCCEEEecccccCC--------------C--CCCCeEEEEEec--CHHHHHHHHHHHHH
Confidence            33444443 4667787777   5899999975432              1  345899999986  45999999999999


Q ss_pred             HHHHH
Q 040741          429 QVEKL  433 (457)
Q Consensus       429 ~~~~~  433 (457)
                      +++..
T Consensus       388 ~~~~~  392 (393)
T COG0436         388 FLAEY  392 (393)
T ss_pred             HHHhc
Confidence            88754

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.97  E-value=6.1e-30  Score=252.51  Aligned_cols=324  Identities=18%  Similarity=0.199  Sum_probs=231.3

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhh----HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWE----SEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~----~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ..-|||++.++++.+++.+++.++....   |+++.+..|..    ..+.++++|+.+++++|++. .++|++ |+.++.
T Consensus        11 s~~YL~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~-~l~~~s-G~~a~~   85 (370)
T PRK05937         11 TNDFLGFSRSDTLVHEVEKRYRLYCRQF---PHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE-AFIVPS-GYMANL   85 (370)
T ss_pred             CCCccCCCCCHHHHHHHHHHHHHhcccc---CCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe-EEEECC-hHHHHH
Confidence            3359999998888899999988886543   54445555555    66899999999999999964 355555 556665


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC------CCceEEEEeccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR------PDTGLISVMAVN  206 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~------~~t~li~i~~~~  206 (457)
                      .++..+.    ++++.|+++..+|.++..+++.+.  |..+. ++     ..|+++++++++      +.+.+|++++++
T Consensus        86 ~~~~~~~----~~~d~ii~d~~~H~sv~~~~~~~~--~~~~~-~~-----~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~  153 (370)
T PRK05937         86 GLCAHLS----SVTDYVLWDEQVHISVVYSLSVIS--GWHQS-FR-----HNDLDHLESLLESCRQRSFGRIFIFVCSVY  153 (370)
T ss_pred             HHHHHhC----CCCCEEEEEhhhhHHHHHHHHHcC--CceEE-ec-----CCCHHHHHHHHHhhhccCCCcEEEEEecCC
Confidence            4444433    678999999999999999987652  43333 33     358999999886      346788899999


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC----CC---cccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE----KW---NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~----~~---~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      |++|.+.|+++|.++|+++|+++++|++|+.|..+.+..    .+   +.++++.|++|.+|+.|.|+++.+ +....+.
T Consensus       154 s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~~vl~~~-~~~~~~~  232 (370)
T PRK05937        154 SFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALGSMGAALLSSS-EVKQDLM  232 (370)
T ss_pred             CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhhcCceEEEcCH-HHHHHHH
Confidence            999999999999999999999999999999987766542    22   234677889999999987776653 3222222


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      ......     ...++.+++.++++.++++++.+..+...++.+++.+++.+.|.. ..       +    .....+.++
T Consensus       233 ~~~~~~-----~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~-~~-------~----~~~~~i~~~  295 (370)
T PRK05937        233 LNSPPL-----RYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSS-AA-------P----GCVQPIFLP  295 (370)
T ss_pred             HhCCCC-----eecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCC-CC-------C----CCEEEEEeC
Confidence            111100     122346667788888899888765466778888888888887754 21       0    011224455


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +.....+...|  +||.+.  .+|.+                  ..+.|||+++.++|+||||+++++|++.+++++.
T Consensus       296 ~~~~~~~~~~L~~~gi~v~--~~~~~------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~~~~  353 (370)
T PRK05937        296 GISEQELYSKLVETGIRVG--VVCFP------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEKYQK  353 (370)
T ss_pred             ChhHHHHHHHHHHCCeeEE--eeCCC------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            45556666666  577664  33432                  1268999999999999999999999999887654

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.97  E-value=3.2e-29  Score=250.00  Aligned_cols=329  Identities=17%  Similarity=0.209  Sum_probs=237.8

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ++++.++.    ..+|++.+++.+.+.+. .+++.++ +..|.  .+.+.++|+.+++++|.+  ++++++||++|++.+
T Consensus        40 ~i~~~~~~~lg~~~~~~v~~~~~~~~~~~~~~~~~s~-~~~G~--~~~~~~le~~ia~~~g~~--~~ii~~~~~~a~~~~  114 (393)
T TIGR01822        40 VLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVR-FICGT--QDIHKELEAKIAAFLGTE--DTILYASCFDANGGL  114 (393)
T ss_pred             EEEeeCCCccccCCCHHHHHHHHHHHHHhCCCCCCcC-cccCC--hHHHHHHHHHHHHHhCCC--cEEEECchHHHHHHH
Confidence            44444444    35789999999998763 5555552 33343  467899999999999985  377778999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNE  208 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~  208 (457)
                      +.++.    ++||+|+++.++|+++...++.+   +.+...++     .+|++++++++++      ++++|++++++|+
T Consensus       115 ~~~l~----~~gd~vi~~~~~~~s~~~~~~~~---~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~  182 (393)
T TIGR01822       115 FETLL----GAEDAIISDALNHASIIDGVRLC---KAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSM  182 (393)
T ss_pred             HHHhC----CCCCEEEEeccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccC
Confidence            88887    89999999999999999887665   55554333     3689999998874      7889999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      +|.+.|+++|+++|++||+++++|++|+.|....         +.. .++|++++|+||++++..+|+++++++..+.+.
T Consensus       183 tG~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~-~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~  261 (393)
T TIGR01822       183 DGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVM-GRVDIITGTLGKALGGASGGFTTARKEVVELLR  261 (393)
T ss_pred             CCCcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCC-CCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHH
Confidence            9999999999999999999999999998765421         111 257999999999655334699998877666554


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      ......     ...++.++..++++.++++.. ++.++..++++++++++.+.|.+ . ++.+..+ .   ..++.+.+.
T Consensus       262 ~~~~~~-----~~~~~~~~~~~~a~~~al~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~i~~~  329 (393)
T TIGR01822       262 QRSRPY-----LFSNSLPPAVVGASIKVLEML-EASNELRDRLWANTRYFRERMEA-A-GFDIKPA-D---HPIIPVMLY  329 (393)
T ss_pred             HhCccc-----eecCCCCHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHH-c-CCCCCCC-C---CCEEEEEeC
Confidence            322111     123455556666666777665 34677888999999999999988 3 6655432 1   234444443


Q ss_pred             c-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          360 Y-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       360 ~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      . ....++...|  +||.+. +..+ +.              .......+||+++.+++++||++++++|++++++++
T Consensus       330 ~~~~~~~l~~~L~~~gI~v~-~~~~-~~--------------~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~~~~  391 (393)
T TIGR01822       330 DAVLAQRFARRLLEEGIYVT-GFFY-PV--------------VPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELG  391 (393)
T ss_pred             CHHHHHHHHHHHHHCCeeEe-eeCC-CC--------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            2 2345666665  688776 3221 10              011235799999999999999999999999877653

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=3.8e-31  Score=247.88  Aligned_cols=352  Identities=18%  Similarity=0.200  Sum_probs=279.5

Q ss_pred             ccCCCCcccccceecccccCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh
Q 040741           36 TAYEPQEDQNGITLKGVRIAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI  114 (457)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~  114 (457)
                      ++|++|++..+.+...+.+.+.++||.|+... ++.+.+.+++..+.....+.    .+  -.+..+.+.++++.+|+++
T Consensus       122 S~D~n~tfk~tG~~~~~lNlgSYNYLGFa~~~g~ca~~~~~~~~kygl~~css----~~--e~G~~~~hkelE~l~A~f~  195 (519)
T KOG1357|consen  122 SDDYNWTFKYTGTRSRCLNLGSYNYLGFAQSVGPCAEASLKSFDKYGLSRCSS----RH--EAGTTEEHKELEELVARFL  195 (519)
T ss_pred             ccCCCceEEeccceeeeeeecccccccccccCCcCChHHHHHHHHhccccccc----ch--hcccHHHHHHHHHHHHHhc
Confidence            34899999999999999999999999998877 99999999999986543221    11  2234478999999999999


Q ss_pred             CCCCCcEEEeCC-hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc
Q 040741          115 GASPKEIIFTSG-ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI  193 (457)
Q Consensus       115 g~~~~~i~~t~g-~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i  193 (457)
                      |+++. ++|..| +|.++  .+.+++    .++..||.++.+|.+....++..   |+.++.+..+     |+.+||+.+
T Consensus       196 g~e~a-~vF~mGf~TNs~--~~p~l~----~~gsLIiSDelNHaSi~~GaRLS---gAtiRVfkHN-----dm~~LEr~L  260 (519)
T KOG1357|consen  196 GVEDA-IVFSMGFATNSM--NIPSLL----GKGSLIISDELNHASLITGARLS---GATTRVFRHN-----DMQGLERLL  260 (519)
T ss_pred             CCcce-EEEecccccccc--Ccceee----cCCcceeeccccchheecccccc---CceEEEEecC-----CHHHHHHHH
Confidence            98753 677666 55554  456677    89999999999999999999887   9999999988     888888887


Q ss_pred             CC-------------CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccE
Q 040741          194 RP-------------DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSL  251 (457)
Q Consensus       194 ~~-------------~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di  251 (457)
                      ++             ++.+|+++...++-|.+..++++.+++|+|+.++++|+||+.|+..         ..++..++|+
T Consensus       261 rd~I~~gqP~Thrp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDI  340 (519)
T KOG1357|consen  261 RDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDI  340 (519)
T ss_pred             HHHHhcCCCCcCCcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhhee
Confidence            63             2357888999989999999999999999999999999999987762         2344446899


Q ss_pred             EEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-----hhHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-----EMDYDHKRITALH  326 (457)
Q Consensus       252 ~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-----~~~~~~~~~~~~~  326 (457)
                      ++++++|.||..| |++.++++.++.++......     ......+++.+.....+++.+..     ..++..+++.+++
T Consensus       341 mMGtftKSfga~G-Gyiagsk~lid~lrt~s~~~-----~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns  414 (519)
T KOG1357|consen  341 MMGTFTKSFGAAG-GYIAGSKELIDYLRTPSPSA-----LYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENS  414 (519)
T ss_pred             ecceehhhccccc-ceecCcHHHHhhhccCCCce-----eecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhh
Confidence            9999999999987 99999998887776544332     23346677777777788888763     2688889999999


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ++++..+++  .++.++++.++++.+++.+.........-.+.-+++++..+.+..++.+                .+++
T Consensus       415 ~yfr~~l~~--~gfivyG~~dSpVvplll~~~~k~~~f~r~~l~~nigvVvvgfPatpl~----------------e~r~  476 (519)
T KOG1357|consen  415 RYFRWELQK--MGFIVYGNNDSPVVPLLLYGPAKIVAFSREMLERNIGVVVVGFPATPLL----------------ESRA  476 (519)
T ss_pred             HHHHHhhhc--CcEEEecCCCCCcceeeecCcccccHHHHHHHhcCceEEEEeCCCchHH----------------HhHH
Confidence            999999999  7999999999888887766665443333222336777766655443222                2789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ||+.+..++.|++|++++.+.+.-++
T Consensus       477 R~c~Sa~ht~e~ld~~l~~i~~~g~~  502 (519)
T KOG1357|consen  477 RFCLSASHTKEDLDRALEVIDRVGDE  502 (519)
T ss_pred             HhhhcccccHHHHHHHHHHHhhhchh
Confidence            99999999999999999999888754

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.97  E-value=3.6e-28  Score=240.77  Aligned_cols=329  Identities=18%  Similarity=0.203  Sum_probs=238.4

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      +|.+.++. +.+.+.+++..++....+++..  +   ....+..+++++++++++|++++++++++|+|+++.+++.++.
T Consensus        24 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~   97 (373)
T TIGR03812        24 ILGSMCTN-PHPIAVKAYDMFIETNLGDPGL--F---PGTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAK   97 (373)
T ss_pred             EEEEEeCC-chHHHHHHHHHHhhcCCCCccc--C---ccHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHH
Confidence            44444443 4455688888887655555431  1   1234677899999999999988788999999999988887765


Q ss_pred             hhh--cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          140 HFY--KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       140 ~~~--~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      ...  +.+|+.|+++.++|.++..+++..   |++++.++.+.++.+|++++++++++++..+++..++|++|.+.|+++
T Consensus        98 ~~~~~~~~g~~vl~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~~~  174 (373)
T TIGR03812        98 NLAREEKRTPNIIVPESAHFSFEKAAEML---GLELRYAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDIEE  174 (373)
T ss_pred             HHHhccCCCcEEEECCcchHHHHHHHHHc---CCeEEEEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCHHH
Confidence            321  146689999999999988776655   999999999888889999999999888754444447899999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCC----------cccCCCCcccEEEeccccc-cCCCCceEEEE-ecCCCcccc---ccc
Q 040741          218 IGQICKEFKIPFHTDAAQALGKI----------PVDVEKWNVSLMSLSGHKI-YGPKGVGALYM-RRRPRIRVE---PLI  282 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~----------~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~-~~~~~~~~~---~~~  282 (457)
                      |.++|+++|+++|+|+||+.+..          .+++...++|++++|+||+ ++|.|+|+++. +++.++.+.   +..
T Consensus       175 i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~~~~~  254 (373)
T TIGR03812       175 LSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVDAPYL  254 (373)
T ss_pred             HHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhcccCccc
Confidence            99999999999999999985532          2344334789999999995 45656666654 444444432   111


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      .+..  .....|+.+...+.++..+++.+. +++++..++..++++++++.|++ ++...+.. +   ..+++.+.++  
T Consensus       255 ~~~~--~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~-~---~~~~v~~~~~--  325 (373)
T TIGR03812       255 TVKK--QATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKK-IGFEPVIE-P---VLNIVAFEVD--  325 (373)
T ss_pred             CCCC--CcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEcC-C---CceEEEEEeC--
Confidence            1110  111235777778888888888764 46888999999999999999999 64333433 1   2445555554  


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      +..++...|  +||.+....                      ..+.|||+++.++|++|+|+++++|++
T Consensus       326 ~~~~v~~~L~~~gi~v~~~~----------------------~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       326 DPEEVRKKLRDRGWYVSVTR----------------------CPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             CHHHHHHHHHHCCceeccCC----------------------CCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            234566666  577765321                      126899999999999999999999975

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.97  E-value=3.9e-29  Score=245.07  Aligned_cols=281  Identities=21%  Similarity=0.233  Sum_probs=217.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhhhhhc----------CCCCEEEEcCCCCcchH
Q 040741           93 HLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKGVMHFYK----------DKKRHVITTQTEHKCVL  160 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~~~~~~~----------~~g~~vi~~~~~h~~~~  160 (457)
                      +..+....+..+++++++++++|++  +++++||+|||+|+.+++.++...+.          ..+..|+++..+|.++.
T Consensus        30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~  109 (345)
T cd06450          30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVE  109 (345)
T ss_pred             cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHH
Confidence            3444455567777889999999985  34799999999999999998864221          12458899999999998


Q ss_pred             HHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehh
Q 040741          161 DSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA  234 (457)
Q Consensus       161 ~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a  234 (457)
                      .+++.+   |.+++.++.+.++.+|+++|++++++      +++++++++++|++|.+.|+++|.++|+++|+++|+|++
T Consensus       110 ~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~a  186 (345)
T cd06450         110 KAAAYL---DVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAA  186 (345)
T ss_pred             HHHHHH---hcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEech
Confidence            888777   99999999988889999999999987      788999999999999999999999999999999999999


Q ss_pred             hhcCCCcccCCC------CcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHH
Q 040741          235 QALGKIPVDVEK------WNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA  307 (457)
Q Consensus       235 ~~~g~~~~~~~~------~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a  307 (457)
                      |+.+..+.+...      .++|++++|+|| +++|.|+|+++++                             ..++..+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------------~~~~~~~  237 (345)
T cd06450         187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------------ALKLWAT  237 (345)
T ss_pred             hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------------HHHHHHH
Confidence            998876543221      268999999999 4578889988776                             3333345


Q ss_pred             HHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----ccchHHHhcc--cCeEecccC
Q 040741          308 CEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----VEGESLLMGL--KEVAVSSGS  379 (457)
Q Consensus       308 l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l--~~i~~~~g~  379 (457)
                      ++.+. .+++++.++..++++++.+.|.+ ++++.+..++.   .+++.+.++.     ....++...|  +|+.+.++.
T Consensus       238 l~~l~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~---~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~  313 (345)
T cd06450         238 LRRFGRDGYGEHIDRIVDLAKYLAELIRA-DPGFELLGEPN---LSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPAT  313 (345)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCCc---eeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEee
Confidence            55444 36889999999999999999999 88888776432   4566666653     2334566666  344443321


Q ss_pred             ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHH
Q 040741          380 ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVK  428 (457)
Q Consensus       380 ~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~  428 (457)
                      ..              +     ...++|++++.. ++++|+|+++++|++
T Consensus       314 ~~--------------~-----~~~~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         314 TL--------------G-----GPNVLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             EE--------------C-----CeEEEEEEecCCCCCHHHHHHHHHHHHh
Confidence            10              0     237899999986 599999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.97  E-value=9.7e-29  Score=242.63  Aligned_cols=326  Identities=19%  Similarity=0.201  Sum_probs=235.3

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ||+|.++.    +-+|++++++.+++++ ++++.+ .+...+...+...++++.+++++|++.  .+++++||+++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~--~iv~~sg~~a~~~~~   78 (349)
T cd06454           3 VLNFCSNDYLGLANHPEVIEAAKEALDK-YGVGAG-GSRLISGTSDLHEELEEELAEFHGKEA--ALVFSSGYAANDGVL   78 (349)
T ss_pred             ceecccCCccccCCCHHHHHHHHHHHHH-hCCCCC-CcCeecCCchHHHHHHHHHHHHhCCCC--EEEeccHHHHHHHHH
Confidence            45555544    3369999999999975 444332 222222334788999999999999853  667777889999888


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-----CceEEEEeccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-----DTGLISVMAVNNEIG  210 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G  210 (457)
                      .++.    ++|++|++++++|++...+++..   |.++++++.     +|++++++++++     +++++++++++|++|
T Consensus        79 ~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG  146 (349)
T cd06454          79 STLA----GKGDLIISDSLNHASIIDGIRLS---GAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDG  146 (349)
T ss_pred             HHhc----CCCCEEEEehhhhHHHHHHHHHc---CCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCC
Confidence            8887    89999999999999988776554   988887753     478888888863     578999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCc--------ccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIP--------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~--------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      ...|+++|.++|+++|+++|+|++|+.|...        .+....+.|+++.|+||.+|+.| |+++.+++..+++....
T Consensus       147 ~~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~g-G~i~~~~~~~~~~~~~~  225 (349)
T cd06454         147 DIAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGAVG-GYIAGSKELIDYLRSYA  225 (349)
T ss_pred             CccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcccC-CEEECCHHHHHHHHHhc
Confidence            9999999999999999999999999876543        12234468999999999888876 88888766554443322


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YV  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  361 (457)
                      ...     ...++.+...++++.++++.... .+...++++++++++.+.|.+ + ++.+.+++.   ..+..+.+. ..
T Consensus       226 ~~~-----~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~~---~~~~~~~~~~~~  294 (349)
T cd06454         226 RGF-----IFSTSLPPAVAAAALAALEVLQG-GPERRERLQENVRYLRRGLKE-L-GFPVGGSPS---HIIPPLIGDDPA  294 (349)
T ss_pred             hhh-----hccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCC---CcEEEEeCCChH
Confidence            111     11235667777778788876654 567788999999999999988 4 666655422   222222222 23


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +..++...|  +||.+.++.....                ....+.|||+++.+++++|+++++++|+++
T Consensus       295 ~~~~~~~~L~~~gI~~~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         295 KAVAFSDALLERGIYVQAIRYPTV----------------PRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             HHHHHHHHHHhCCceEEEecCCcc----------------CCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            345666666  5887765422110                112379999999999999999999999864

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.97  E-value=3.4e-28  Score=241.83  Aligned_cols=338  Identities=17%  Similarity=0.182  Sum_probs=242.5

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC---CCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS---PKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~---~~~i~~t~g~T~a~~  132 (457)
                      +.++|+.+.+. ++++.+.+++.+++...  ...  .|....+..+..+.+++.+++++|..   ++++++|+|+++++.
T Consensus        28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~~--~~~--~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~  103 (389)
T PRK05957         28 GTISLGQGVVSYPPPPEAIEALNNFLANP--ENH--KYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFM  103 (389)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhCC--CCC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHH
Confidence            56888887776 67889999998877532  111  12112233467778888888888873   567999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      .++.+++    ++||+|+++.+.|..+...++.   .|.++++++.+.++.+|++++++++++++++|++++++||||.+
T Consensus       104 ~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~i~~~~klv~~~~p~NPtG~~  176 (389)
T PRK05957        104 NAILAIT----DPGDEIILNTPYYFNHEMAITM---AGCQPILVPTDDNYQLQPEAIEQAITPKTRAIVTISPNNPTGVV  176 (389)
T ss_pred             HHHHHhc----CCCCEEEEeCCCCcCHHHHHHh---cCCEEEEeecCCCCCcCHHHHHHhcCcCceEEEEeCCCCCCCcC
Confidence            9998887    8999999999999887665554   49999999988777899999999999999999999999999999


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCCC------c-ccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCcccc
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGKI------P-VDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVE  279 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~~------~-~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~  279 (457)
                      +|   +++|+++|+++|+++++|++++-...      + ... +.....+++.|++|.+|.+|  +|+++++++.++++.
T Consensus       177 ~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~  256 (389)
T PRK05957        177 YPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASWRIGYMVIPIHLLEAIK  256 (389)
T ss_pred             cCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccceeEEEecCHHHHHHHH
Confidence            98   88899999999999999999862211      1 111 11224578889999888777  999999887766665


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEE
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  358 (457)
                      .....       .....+.....++..+++.....+++..++++++++.+.+.|++ ++++ .+.. +..  +.++.+.+
T Consensus       257 ~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~~g--g~~~~~~~  325 (389)
T PRK05957        257 KIQDT-------ILICPPVVSQYAALGALQVGKSYCQQHLPEIAQVRQILLKSLGQ-LQDRCTLHP-ANG--AFYCFLKV  325 (389)
T ss_pred             HHHhh-------cccCCCcHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-cCCCccccC-CCe--eEEEEEeC
Confidence            44321       11133333333333344322223566777788899999999988 6664 3322 221  22333444


Q ss_pred             c-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          359 A-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       359 ~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      + +.+..++...+   +||.+.+|..|..              .   ..+++||+++.. +.+++++.+++|.+.++++.
T Consensus       326 ~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--------------~---~~~~iRis~~~~-~~~~l~~~~~~l~~~~~~~~  387 (389)
T PRK05957        326 NTDLNDFELVKQLIREYRVAVIPGTTFGM--------------K---NGCYLRIAYGAL-QKATAKEGIERLVQGLKTIV  387 (389)
T ss_pred             CCCCChHHHHHHHHHHCCEEEccchhhCC--------------C---CCCEEEEEEecC-CHHHHHHHHHHHHHHHHhhh
Confidence            3 34566777765   5899999875421              1   136999999763 58899999999999887653

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.97  E-value=2.4e-28  Score=244.15  Aligned_cols=340  Identities=14%  Similarity=0.122  Sum_probs=230.7

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccch--hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLF--GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~--~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      .+.+.|..+.++..+|+++++..... ... +.+. .+..  ..+..+..+++++++++++|++.++++++++|+.+.+.
T Consensus        20 ~~~~~l~~g~~~~~~p~~~~~~~~~~-~~~-~~~~-~~~~~~~~g~~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~   96 (398)
T cd00613          20 QSMSFLGSGTYKHNPPAVIKRNILEN-EFY-TAYT-PYQPEISQGRLQALFELQTMLCELTGMDVANASLQDEATAAAEA   96 (398)
T ss_pred             cCcccccccccCCcCcHHHHHHhccc-cCc-ccCC-CCChhhhhhHHHHHHHHHHHHHHHHCCCccceeccCchHHHHHH
Confidence            34478888888866666666644433 110 1000 0100  22344788899999999999987678888877765555


Q ss_pred             HHHHhhhhhcCC--CCEEEEcCCCCcchHHHHHHHH-hcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          134 SIKGVMHFYKDK--KRHVITTQTEHKCVLDSCRHLQ-QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       134 al~~~~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~-~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++..+..   .+  |++|++++++|+++..++..+. ..|++++.++.+.++.+|++++++++++++++|++++++ ++|
T Consensus        97 ~~~~~~~---~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~t~~viv~~~~-~~G  172 (398)
T cd00613          97 AGLAAIR---AYHKRNKVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVSEEVAALMVQYPN-TLG  172 (398)
T ss_pred             HHHHHHh---cccCCCEEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcCCCeEEEEEECCC-CCc
Confidence            5554432   44  9999999999999998887762 334899999988777899999999999999999999985 799


Q ss_pred             cccCh-HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC-----CCceEEEEecCCCccccccccC
Q 040741          211 VIQPM-EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP-----KGVGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       211 ~~~~l-~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~-----~G~G~l~~~~~~~~~~~~~~~~  284 (457)
                      .+.++ ++|+++|++||+++|+|++|+.+....+...+++|++++|+||+++|     +|+|+++++++..+.+.+...+
T Consensus       173 ~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~~~d~~~~s~~K~~~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~  252 (398)
T cd00613         173 VFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEYGADIVVGNLQKTGVPHGGGGPGAGFFAVKKELVRFLPGRLVG  252 (398)
T ss_pred             eecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHcCCCEEEeeccccCCCCCCCCCceeEEEEhhhhHhhCCCCeec
Confidence            99885 99999999999999999999877666666667899999999997643     4589999988766655443222


Q ss_pred             Ccc-----------------ccccccCCCC-----hhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          285 GGQ-----------------ERGIRSGTLP-----TPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       285 ~~~-----------------~~~~~~~t~~-----~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                      +..                 ..++..++.+     .....++..++... ..+++++.++.+++++++++.|.+ +++..
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~~~~  331 (398)
T cd00613         253 VTKDAEGNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKE-VGGVL  331 (398)
T ss_pred             cccccCCCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-cCCcc
Confidence            210                 0001122222     12222222333333 346788899999999999999998 65543


Q ss_pred             EeCCCCCcccceEEEEEcc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCH
Q 040741          342 VNGSMERRYIGNLNLSFAY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE  416 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~  416 (457)
                      ...   ......+.+.++.   .+..++...|  ++|.+...                .    ....+.||++++.++|+
T Consensus       332 ~~~---~~~~~~v~~~~~~~~~~~~~~~~~~L~~~gi~~~~~----------------~----~~~~~~lRis~~~~~t~  388 (398)
T cd00613         332 PFN---GPFFHEFVLRLPPLYGIRAEDLAKALIDGGFHAPTM----------------Y----LPVDGTLMIEPTETETK  388 (398)
T ss_pred             cCC---CCeeEEEEEEcCCcchHHHHHHHHhhhhcCcccccc----------------c----cCCCCeEEEEcCCCCCH
Confidence            211   1122333445442   2345566665  34432110                0    01237899999999999


Q ss_pred             HHHHHHHHHH
Q 040741          417 AEVDRAIELT  426 (457)
Q Consensus       417 edid~~~~~l  426 (457)
                      ||||+++++|
T Consensus       389 edid~~~~~L  398 (398)
T cd00613         389 EELDALLEAL  398 (398)
T ss_pred             HHHHHHHHhC
Confidence            9999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.97  E-value=9.2e-29  Score=242.26  Aligned_cols=330  Identities=16%  Similarity=0.142  Sum_probs=239.3

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEe-CChHHHHHHHHHHhhhh
Q 040741           64 QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFT-SGATESNNVSIKGVMHF  141 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t-~g~T~a~~~al~~~~~~  141 (457)
                      .|+..++++++++|.....+...-     ...+..+.+.++++++.++++++++++ +++|+ +|||.++++++.++.  
T Consensus         9 pGP~~~~~~v~~a~~~~~~~~~~~-----~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~--   81 (361)
T TIGR01366         9 SGPSKVRLEQLQALTTTAASLFGT-----SHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI--   81 (361)
T ss_pred             CCCcCCCHHHHHHHHhcCcccccc-----CcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc--
Confidence            467789999999987543222211     122446668999999999999999544 68886 669999999999986  


Q ss_pred             hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHH
Q 040741          142 YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQI  221 (457)
Q Consensus       142 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l  221 (457)
                        .+ +.+++...+|...+.........+.++..++.+.+..++.     .+++++++|+++|..|.+|.+.|+++|   
T Consensus        82 --~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~lV~~~h~et~tG~~~pi~~I---  150 (361)
T TIGR01366        82 --EK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QADPGVDVIAWAHNETSTGVAVPVRRP---  150 (361)
T ss_pred             --cc-cccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccCCCCCEEEEcccCCccceecccccc---
Confidence              33 3334445666655543332211122677777665544433     456899999999999999999999988   


Q ss_pred             HHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC-CCceEEEEecCCCccccccccCCc----c---------
Q 040741          222 CKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGGG----Q---------  287 (457)
Q Consensus       222 ~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~----~---------  287 (457)
                      +|++|+++++|+++++|..+++++.  +|++++|.||++|+ +|+++++++++..+++.+...++.    .         
T Consensus       151 ~~~~g~~~iVDavqs~g~~~idv~~--~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~  228 (361)
T TIGR01366       151 EGSDDALVVIDATSGAGGLPVDIAE--TDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDN  228 (361)
T ss_pred             cccCCCeEEEEcCccccCCCCCHHH--CCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhc
Confidence            5889999999999999999999985  89999999997664 578888889987777665443321    0         


Q ss_pred             -ccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEEEE-cccc
Q 040741          288 -ERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNLSF-AYVE  362 (457)
Q Consensus       288 -~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~  362 (457)
                       ..+...+|++...++++..+++++.+  +++.+.++.+++++++++.+.+ ++.+.++... ..+......+.| .+.+
T Consensus       229 ~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~-~~~~~~~~~~~~~~s~~v~~v~~~~g~~  307 (361)
T TIGR01366       229 SLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQE-RPYATPFVTDPGKRSQVVGTIDFVDDID  307 (361)
T ss_pred             cccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcccceEEEECCCccC
Confidence             11234578888888899999999876  3899999999999999999999 7666665432 212222233444 3456


Q ss_pred             chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       363 ~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ..++...|  +||.+.++..             .+      ..+.+|+++..++|.+||++++++|+++++++
T Consensus       308 ~~~v~~~L~~~gI~i~~~~~-------------~l------~~~~vRis~~~~~t~~di~~l~~al~~~~~~~  361 (361)
T TIGR01366       308 AATVAKILRANGIVDTEPYR-------------KL------GRNQLRVAMFPAIDPDDVEALTECVDWVVERL  361 (361)
T ss_pred             HHHHHHHHHHCCCeeccCcc-------------cc------CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhhC
Confidence            66676666  5787754321             11      22689999999999999999999999987753

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.97  E-value=5.1e-28  Score=240.46  Aligned_cols=333  Identities=17%  Similarity=0.161  Sum_probs=237.4

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNV  133 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~  133 (457)
                      +.+.|+.+.+. ++++.+.+++.+.+.+..    . .|....+..+..+.+.+.+.++.|  ++++++++|+|+++|+.+
T Consensus        25 ~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~   99 (382)
T PRK06108         25 GVLPLWFGESDLPTPDFIRDAAAAALADGE----T-FYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQALML   99 (382)
T ss_pred             CeEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHH
Confidence            45777776666 568899999988875421    0 011111222444455555555557  678899999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++.++.    ++|+.|++..+.|+.+...++..   |.+++.++.+.   ++.+|+++++++++++++++++++++||+|
T Consensus       100 ~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~p~NPtG  172 (382)
T PRK06108        100 AAQALV----GPGDEVVAVTPLWPNLVAAPKIL---GARVVCVPLDFGGGGWTLDLDRLLAAITPRTRALFINSPNNPTG  172 (382)
T ss_pred             HHHHhc----CCCCEEEEeCCCccchHHHHHHC---CCEEEEeeCCCCCCCccCCHHHHHHhcCccceEEEEECCCCCCC
Confidence            999887    89999999999999888776655   99999999863   245899999999998999999999999999


Q ss_pred             cccC---hHHHHHHHHhcCCcEEEehhhhcCCCc--------ccCCC-CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKIP--------VDVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~--------~~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      .+.+   +++|+++|+++|+++|+|++|+.....        .++.. .+..+++.|++|.+|.+|  +|+++++++.++
T Consensus       173 ~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~~~  252 (382)
T PRK06108        173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGWRLGWLVAPPALGQ  252 (382)
T ss_pred             cccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCcccceeeeeCCHHHHH
Confidence            9887   678899999999999999998743221        11111 134588999999887555  899999877666


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++......       .....+.....++..++....+.+++..++++++++++.+.|++ ++++.+..+. .  +.++.+
T Consensus       253 ~~~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~-~--g~~~~~  321 (382)
T PRK06108        253 VLEKLIEY-------NTSCVAQFVQRAAVAALDEGEDFVAELVARLRRSRDHLVDALRA-LPGVEVAKPD-G--AMYAFF  321 (382)
T ss_pred             HHHHHHHh-------cccCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCCC-e--eEEEEE
Confidence            55443211       11233444444444555433344678888899999999999988 7787765432 1  233344


Q ss_pred             EEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          357 SFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       357 ~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .++. .+..++...|   +||.+.+|..+.+                 ...+++||+++.  +.++++.++++|+++++
T Consensus       322 ~l~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        322 RIPGVTDSLALAKRLVDEAGLGLAPGTAFGP-----------------GGEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             eCCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence            5543 2445666654   5899988864421                 123799999998  78999999999988765

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.97  E-value=2e-28  Score=240.05  Aligned_cols=317  Identities=18%  Similarity=0.230  Sum_probs=234.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ++.|.|..+.++ +.++++++++.++.......+..           ...++|+.++++++++++++++++|+|+++..+
T Consensus        19 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~   87 (346)
T TIGR01141        19 KEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPDP-----------DPAELKQALADYYGVDPEQILLGNGSDEIIELL   87 (346)
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCCC-----------CHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHH
Confidence            467788766655 67899999999986533222211           136899999999999888999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +.++.    ++|+.|+++.+.|+.+...++.   .|.+++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus        88 ~~~l~----~~gd~v~~~~p~y~~~~~~~~~---~g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NptG~~~~  160 (346)
T TIGR01141        88 IRAFL----EPGDAVLVPPPTYSMYEISAKI---HGAEVVKVPLDEDGQLDLEDILVAIDDKPKLVFLCSPNNPTGNLLS  160 (346)
T ss_pred             HHHhc----CCCCEEEEcCCCHHHHHHHHHH---cCCeEEEeccCCCCCCCHHHHHHhcCCCCCEEEEeCCCCCCCCCCC
Confidence            98887    8899999999988766554444   4999999999888889999999999889999999999999999999


Q ss_pred             hHHHHHHHHhc--CCcEEEehhhhcCCC---cccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741          215 MEEIGQICKEF--KIPFHTDAAQALGKI---PVDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       215 l~~i~~l~~~~--~v~li~D~a~~~g~~---~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      ++++.++|+.+  ++++++|++|+.-..   ..+. .....++++.|++|++|.+|  +|+++++++.++++.+....  
T Consensus       161 ~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~~--  238 (346)
T TIGR01141       161 RSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLAEYPNLIVLRTLSKAFGLAGLRIGYAIANAEIIDALNKVRAP--  238 (346)
T ss_pred             HHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHhhCCCEEEEehhhHhhhchhhhceeeecCHHHHHHHHhccCC--
Confidence            99999999887  999999999872111   1111 11233577889999887555  89999987766655543321  


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                             ...+.+.+.++..+++... .+.+..++++++++++.+.|++ ++++.+.+. .   +.++.+.++. +.+++
T Consensus       239 -------~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~-~---g~~~~~~~~~-~~~~~  304 (346)
T TIGR01141       239 -------FNLSRLAQAAAIAALRDDD-FIEKTVEEINAERERLYDGLKK-LPGLEVYPS-D---ANFVLIRFPR-DADAL  304 (346)
T ss_pred             -------CCCCHHHHHHHHHHhCCHH-HHHHHHHHHHHHHHHHHHHHHh-cCCCEECCC-c---CCEEEEecCC-CHHHH
Confidence                   1234444444444443322 4677888899999999999998 778776532 1   3455555554 55666


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ...|  +||.+.+|..+..                 . .+++|++++   +++|+++++++|+
T Consensus       305 ~~~L~~~gI~v~~g~~f~~-----------------~-~~~iRls~~---~~~~i~~~~~~l~  346 (346)
T TIGR01141       305 FEALLEKGIIVRDLNSYPG-----------------L-PNCLRITVG---TREENDRFLAALR  346 (346)
T ss_pred             HHHHHHCCeEEEeCCCcCC-----------------C-CCeEEEecC---CHHHHHHHHHHhC
Confidence            6666  6999988764311                 1 389999976   6899999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=7.6e-28  Score=240.22  Aligned_cols=340  Identities=16%  Similarity=0.149  Sum_probs=240.5

Q ss_pred             cccCCCcEEecCCCCC--CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CC-CcEEEe
Q 040741           52 VRIAGRPLYLDMQATT--PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGA--SP-KEIIFT  124 (457)
Q Consensus        52 ~~~~~~~i~l~~~~~~--~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~-~~i~~t  124 (457)
                      -+...+.++|+.+.+.  ++++.+.+++.+.+...  .+++.      ..+..+..+.+.++++++.|.  ++ +++++|
T Consensus        35 ~~~~~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~~~~Y~~------~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it  108 (405)
T PRK06207         35 EPLPGRPVDFSHGDVDAHEPTPGAFELFSAGVERGGVQAYTE------YRGDADIRELLAARLAAFTGAPVDAADELIIT  108 (405)
T ss_pred             CcCCCCceecCCcCCCCCCCCHHHHHHHHHHHhcCCCccCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEe
Confidence            3455777899987766  36678888888876532  11111      112234555566666776684  56 789999


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-----CCCCCCHHHHHHhcCCCceE
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-----ADGIVNLDELRAAIRPDTGL  199 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-----~~~~~d~~~le~~i~~~t~l  199 (457)
                      +|+++++.+++.+++    ++||.|++..+.|+.+...++.+   |.+++.++.+     .+..+|+++|++++++++++
T Consensus       109 ~Ga~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~~k~  181 (405)
T PRK06207        109 PGTQGALFLAVAATV----ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYLSADKRAGLDLDQLEEAFKAGVRV  181 (405)
T ss_pred             CCcHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccccCcccCCCcCHHHHHHhhhhcCeE
Confidence            999999999999988    89999999999999888777666   9999988875     24678999999999989999


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----CCcccCC----CCcccEEEeccccccCCCC--ce
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----KIPVDVE----KWNVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~~~~~~~----~~~~Di~~~s~~K~~g~~G--~G  266 (457)
                      |++++++||||.+.+   +++|+++|++||++|++|++++..    .....+.    ..+.-+++.|++|.+|.+|  +|
T Consensus       182 v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG  261 (405)
T PRK06207        182 FLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGYRLG  261 (405)
T ss_pred             EEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhccCcccceE
Confidence            999999999999998   677888999999999999999742    1111111    1123478899999888656  99


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +++.+++.++++.......       ....+.....++..+++.....+++..++++++++.+.+.|++ ++++.+..+.
T Consensus       262 ~ii~~~~l~~~~~~~~~~~-------~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p~  333 (405)
T PRK06207        262 VAFGSPAIIDRMEKLQAIV-------SLRAAGYSQAVLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRG-VEGVFVRAPQ  333 (405)
T ss_pred             EEEcCHHHHHHHHHHHhHh-------ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCC
Confidence            9998877666554433211       1122333334444444321123566677778888889899987 7677655421


Q ss_pred             CCcccceEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          347 ERRYIGNLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       347 ~~~~~~~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                       .  +.++.+.++.  .+..++...+   .||.+.+|..+..                 ...+++||+++.  +.++++.
T Consensus       334 -g--g~fl~~~l~~~~~~~~~~~~~l~~~~gV~v~pG~~F~~-----------------~~~~~~Ris~~~--~~~~l~~  391 (405)
T PRK06207        334 -A--GSYLFPRLPRLAVSLHDFVKILRLQAGVIVTPGTEFSP-----------------HTADSIRLNFSQ--DHAAAVA  391 (405)
T ss_pred             -e--eEEEEEeCcccCCCHHHHHHHHHHhcCEEEeCchHhCC-----------------CCCCeEEEEecC--CHHHHHH
Confidence             1  3344455542  3456666665   4999999875421                 113799999996  6899999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          422 AIELTVKQVEKLR  434 (457)
Q Consensus       422 ~~~~l~~~~~~~~  434 (457)
                      .+++|.+++++++
T Consensus       392 al~rl~~~l~~~~  404 (405)
T PRK06207        392 AAERIAQLIERYR  404 (405)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999988765

>PRK08960 hypothetical protein; Provisional

Probab=99.97  E-value=4.4e-28  Score=241.05  Aligned_cols=332  Identities=15%  Similarity=0.127  Sum_probs=234.9

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~  127 (457)
                      ..+.++|+.+.++ ++++.+.+++.+.+....   .      +|.......++|+.++++++      ++++++++|+|+
T Consensus        31 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~------~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~  101 (387)
T PRK08960         31 GHDVIHLEIGEPDFTTAEPIVAAGQAALAAGH---T------RYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGG  101 (387)
T ss_pred             CCCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC---C------ccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCc
Confidence            3467999999888 679999999999876321   1      11111345667777777763      678899999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++|+.+++.++.    ++||+|+++.++|+.+...++..   |.+++.++++.+  +.+|++++++++++++++++++++
T Consensus       102 ~~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p  174 (387)
T PRK08960        102 SGALLLASSLLV----DPGKHWLLADPGYPCNRHFLRLV---EGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVASP  174 (387)
T ss_pred             HHHHHHHHHHhc----CCCCEEEEcCCCCcchHHHHHhc---CCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEECC
Confidence            999999999887    89999999999999998877766   889999988743  468999999999999999999999


Q ss_pred             ccccccccCh---HHHHHHHHhcCCcEEEehhhhcCC---CcccCCCC-cccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          206 NNEIGVIQPM---EEIGQICKEFKIPFHTDAAQALGK---IPVDVEKW-NVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       206 ~~~~G~~~~l---~~i~~l~~~~~v~li~D~a~~~g~---~~~~~~~~-~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      +||||.+.+.   ++|+++|++||+++++|+++..-.   ........ ...+++.|+||.+|.+|  +|+++++++.+.
T Consensus       175 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~  254 (387)
T PRK08960        175 ANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEVDDDAFVLNSFSKYFGMTGWRLGWLVAPPAAVP  254 (387)
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhccCCEEEEeecccccCCcccEEEEEEcCHHHHH
Confidence            9999999984   567778999999999999985321   11111111 23467889999988777  999999887666


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                      ++.......       ....+.....++..++.. ....+.+.++.+++.++.+.+.|++ + ++.+...+..  ..++.
T Consensus       255 ~~~~~~~~~-------~~~~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~p~g--~~f~~  323 (387)
T PRK08960        255 ELEKLAQNL-------YISASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRE-L-GFGIAVEPQG--AFYLY  323 (387)
T ss_pred             HHHHHHhhh-------ccCCCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHh-c-CCcCCcCCCe--eEEEE
Confidence            554433211       113344444444444432 2234677778888889999999988 4 4443222221  33334


Q ss_pred             EEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          356 LSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       356 ~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.++.  .+..++...+   +||.+.+|..|..              .  ...++|||+++.  +.++++.++++|++++
T Consensus       324 ~~~~~~~~~~~~~~~~ll~~~gi~v~pg~~f~~--------------~--~~~~~iRi~~~~--~~~~l~~al~~l~~~~  385 (387)
T PRK08960        324 ADISAFGGDAFAFCRHFLETEHVAFTPGLDFGR--------------H--QAGQHVRFAYTQ--SLPRLQEAVERIARGL  385 (387)
T ss_pred             EeccccCCCHHHHHHHHHHhCCEEEcCchHhCC--------------C--CCCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence            44442  3456666553   5999999875532              1  123699999996  5788888888887765


Q ss_pred             H
Q 040741          431 E  431 (457)
Q Consensus       431 ~  431 (457)
                      +
T Consensus       386 ~  386 (387)
T PRK08960        386 R  386 (387)
T ss_pred             h
Confidence            4

>PLN02822 serine palmitoyltransferase

Probab=99.96  E-value=4.3e-27  Score=238.16  Aligned_cols=334  Identities=14%  Similarity=0.156  Sum_probs=239.0

Q ss_pred             EEecCCCCC----CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           59 LYLDMQATT----PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        59 i~l~~~~~~----~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      -|+|+.+..    ..+|++.+++.+.+++.. +...+   +.-+...+.+.++++.|+++++.+ +.++|++|++ ++..
T Consensus       110 ~~id~~s~~~lgl~~~~~i~ea~~~al~~~G~g~~g~---r~~yg~~~~~~~Lee~La~~~~~~-~~i~~s~G~~-a~~s  184 (481)
T PLN02822        110 DVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGP---RGFYGTIDVHLDCETKIAKFLGTP-DSILYSYGLS-TIFS  184 (481)
T ss_pred             eEEEeECCCcCCCCCCHHHHHHHHHHHHHhCCCCccc---CccccCHHHHHHHHHHHHHHhCCC-CEEEECCHHH-HHHH
Confidence            355555443    357999999999987632 11111   112344578999999999999965 5688887766 6788


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---------CCc-eEEEEe
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---------PDT-GLISVM  203 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---------~~t-~li~i~  203 (457)
                      ++.++.    +++|.|+++...|.++..+++..   |.++++++.+     |+++++..++         +++ ++|+++
T Consensus       185 ai~a~~----~~gd~Ii~d~~~H~s~~~~~~ls---~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve  252 (481)
T PLN02822        185 VIPAFC----KKGDIIVADEGVHWGIQNGLYLS---RSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVE  252 (481)
T ss_pred             HHHHhC----CCCCEEEEeCCccHHHHHHHHHc---CCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEe
Confidence            888887    89999999999999998887766   8899999876     4555544432         234 799999


Q ss_pred             ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEecCC
Q 040741          204 AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRP  274 (457)
Q Consensus       204 ~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~  274 (457)
                      .+++++|.+.|+++|+++|++||+++|+|++|++|...         +++....+|+++.|++|.+|..| |+++++++.
T Consensus       253 ~i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKalg~~G-G~i~g~~~i  331 (481)
T PLN02822        253 AIYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHALATEG-GFCTGSARV  331 (481)
T ss_pred             cCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhhhhCC-eEEEcCHHH
Confidence            99999999999999999999999999999999966432         12222257999999999989887 999988776


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++.++....+.     ..++..++..+.+..++++.... .+...++++++.+++++.|.+ .+++.+..+..   ..++
T Consensus       332 i~~~~~~~~~~-----~fsa~lPp~~~~Aa~~aL~~l~~-~~~~~~~l~~~~~~l~~~L~~-~~g~~~~~~~~---spi~  401 (481)
T PLN02822        332 VDHQRLSSSGY-----VFSASLPPYLASAAITAIDVLED-NPSVLAKLKENIALLHKGLSD-IPGLSIGSNTL---SPIV  401 (481)
T ss_pred             HHHHHhcCCce-----eeccccCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh-cCCcccCCCCC---CCEE
Confidence            65544322111     22334455556666668876553 367889999999999999998 77777654322   4555


Q ss_pred             EEEEccc------c---chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          355 NLSFAYV------E---GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       355 ~~~~~~~------~---~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                      .+.+...      +   ..++...|   +||.+.++.....              ........+||+++..+|++||+++
T Consensus       402 ~l~l~~~~~~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~--------------~~~~~~~~lRi~is~~~t~edI~~~  467 (481)
T PLN02822        402 FLHLEKSTGSAKEDLSLLEHIADRMLKEDSVLVVVSKRSTL--------------DKCRLPVGIRLFVSAGHTESDILKA  467 (481)
T ss_pred             EEEeCCCcccccchHHHHHHHHHHHHhcCCEEEEeeCCCCc--------------CCCCCCCcEEEEECCCCCHHHHHHH
Confidence            5666432      1   13455554   4888876532111              0011125799999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040741          423 IELTVKQVEKLR  434 (457)
Q Consensus       423 ~~~l~~~~~~~~  434 (457)
                      +++|+++++.+.
T Consensus       468 ~~~l~~~~~~~~  479 (481)
T PLN02822        468 SESLKRVAASVL  479 (481)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=6.1e-28  Score=240.32  Aligned_cols=330  Identities=16%  Similarity=0.171  Sum_probs=234.5

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~  129 (457)
                      +.+.|+.+.+. +.++.+.+++.+.+.....         .|.......++++.+++++    |  ++++++++|+|+|+
T Consensus        34 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  104 (391)
T PRK08361         34 NVISLGIGEPDFDTPKNIKEAAKRALDEGWT---------HYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYE  104 (391)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC---------CCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHH
Confidence            45677766665 3567888888877653210         0111123456777777765    3  56788999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      |+.+++.+++    ++|++|+++.++|.++...+...   |++++.++++.  ++.+|+++++++++++++++++++++|
T Consensus       105 al~~~~~~l~----~~g~~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~i~~p~N  177 (391)
T PRK08361        105 ATYLAFESLL----EEGDEVIIPDPAFVCYVEDAKIA---EAKPIRIPLREENEFQPDPDELLELITKRTRMIVINYPNN  177 (391)
T ss_pred             HHHHHHHHhc----CCCCEEEEcCCCCcccHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccccEEEEEeCCCC
Confidence            9999999887    89999999999999988776665   99999999874  346999999999999999999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCC--CCcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      |+|.+.|   +++|.++|+++++++|+|++++...    ......  ....++++.|++|.+|.+|  +|+++++++.+.
T Consensus       178 PtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlRiG~~~~~~~~~~  257 (391)
T PRK08361        178 PTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGWRLGFVIAPEQVIK  257 (391)
T ss_pred             CCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHhhhhhhccCHHHHH
Confidence            9999999   8889999999999999999986321    111111  1245788999999988777  899999876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK--KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++......       ..+..+.....++..+++...  +.+++..++++++++.+.+.|++ ++++.+..+..   +.++
T Consensus       258 ~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~p~g---~~~~  326 (391)
T PRK08361        258 DMIKLHAY-------IIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKE-MPHIKVFEPKG---AFYV  326 (391)
T ss_pred             HHHHHHhh-------hccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHh-CCCCeecCCCE---EEEE
Confidence            54332210       111233333333333443211  23677888889999999999998 77877655421   2233


Q ss_pred             EEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .+.++  +.+..++...+   +||.+.+|..+..                 ...+++||+++.  +.++++.++++|+++
T Consensus       327 ~~~l~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~al~~l~~~  387 (391)
T PRK08361        327 FANIDETGMSSEDFAEWLLEKARVVVIPGTAFGK-----------------AGEGYIRISYAT--SKEKLIEAMERMEKA  387 (391)
T ss_pred             EEECCCCCCCHHHHHHHHHHhCCEEEcCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence            34444  24566676655   4899998865421                 123799999985  678999999999888


Q ss_pred             HHH
Q 040741          430 VEK  432 (457)
Q Consensus       430 ~~~  432 (457)
                      +++
T Consensus       388 l~~  390 (391)
T PRK08361        388 LEE  390 (391)
T ss_pred             Hhc
Confidence            764

>PLN00175 aminotransferase family protein; Provisional

Probab=99.96  E-value=2.1e-27  Score=237.36  Aligned_cols=332  Identities=20%  Similarity=0.177  Sum_probs=235.4

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|..+.+. +.++.+.+++.+.+.... +    .|...    ....++++.+++++    |  ++++ ++++|+|+
T Consensus        54 ~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~~-~----~Y~~~----~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~  124 (413)
T PLN00175         54 HGAINLGQGFPNFDGPDFVKEAAIQAIRDGK-N----QYARG----FGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGC  124 (413)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHHhcCC-C----CcCCC----CCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCH
Confidence            456777776666 457888899888876410 0    11111    22344555555544    5  4565 69999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      ++|+.+++.+++    ++||.|++.++.|+.+...++..   |.+++.++.+ +++.+|+++|++++++++++|++++++
T Consensus       125 ~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~p~  197 (413)
T PLN00175        125 TEAIAATILGLI----NPGDEVILFAPFYDSYEATLSMA---GAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINTPH  197 (413)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecCCC
Confidence            999999999888    89999999999999988777665   9999999987 356889999999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cc---cCCC-CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PV---DVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~---~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      ||||.+++   +++|+++|++|++++|+|++|.....   ..   .+.. .+..+++.|++|.||.+|  +||++++++.
T Consensus       198 NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l  277 (413)
T PLN00175        198 NPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL  277 (413)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHH
Confidence            99999987   67789999999999999999864321   11   1111 234688899999887555  8999998876


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++.+......       ...+.+.+...++..+++.....+++..++++++++.+.+.|++ . ++.+..+ +.  ..++
T Consensus       278 ~~~l~~~~~~-------~~~~~s~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p-~g--~~f~  345 (413)
T PLN00175        278 TWGVRQAHSF-------LTFATATPMQWAAVAALRAPESYYEELKRDYSAKKDILVEGLKE-V-GFKVYPS-SG--TYFV  345 (413)
T ss_pred             HHHHHHHHhh-------ccCCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCC-Ce--eEEE
Confidence            6555433211       11244555555555565433345788888999999999999998 4 6666543 21  2233


Q ss_pred             EEEEc--cc-cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          355 NLSFA--YV-EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       355 ~~~~~--~~-~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+.+.  +. +..++...+   .||.+.+|..+..              ......++|||+++.  +++++++.+++|++
T Consensus       346 ~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~--------------~~~~~~~~iRls~~~--~~e~l~~~~~rL~~  409 (413)
T PLN00175        346 MVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYL--------------NPEDGKNLVRFAFCK--DEETLRAAVERMKT  409 (413)
T ss_pred             EEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCC--------------CCCCCCCEEEEEEcC--CHHHHHHHHHHHHH
Confidence            33432  22 345666655   4899998875432              111234799999984  68999999999998


Q ss_pred             HHH
Q 040741          429 QVE  431 (457)
Q Consensus       429 ~~~  431 (457)
                      .++
T Consensus       410 ~~~  412 (413)
T PLN00175        410 KLK  412 (413)
T ss_pred             HHh
Confidence            875

>PRK07324 transaminase; Validated

Probab=99.96  E-value=6.4e-28  Score=238.24  Aligned_cols=292  Identities=18%  Similarity=0.199  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          102 AVETARSQIADLIG-ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       102 ~~~~~~~~la~~~g-~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ...++++.++++++ ++++++++|+|+++|+.+++.+++    ++||+|++..+.|..+...++..   |.+++.++.+.
T Consensus        63 G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~  135 (373)
T PRK07324         63 GSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALV----EPGDHVISVYPTYQQLYDIPESL---GAEVDYWQLKE  135 (373)
T ss_pred             CCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeccc
Confidence            45689999999885 678899999999999999999998    89999999999998887766655   99999999874


Q ss_pred             -C-CCCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccC-CCCcccE
Q 040741          181 -D-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDV-EKWNVSL  251 (457)
Q Consensus       181 -~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~-~~~~~Di  251 (457)
                       + ..+|++++++++++++++|++++++||||.+.+   +++|+++|++||+++++|+++..-..   ...+ ...+..+
T Consensus       136 ~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I  215 (373)
T PRK07324        136 ENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGI  215 (373)
T ss_pred             ccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCCChhhccCCEE
Confidence             2 458999999999999999999999999999999   88899999999999999999863211   1111 1122357


Q ss_pred             EEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       252 ~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      .+.|++|.+|.+|  +|+++++++.++++.......      . .+.+.....++..+++.....+++..+.++++++.+
T Consensus       216 ~~~s~SK~~~~~G~RiG~i~~~~~li~~~~~~~~~~------~-~~~~~~~q~~a~~~l~~~~~~l~~~~~~~~~~~~~l  288 (373)
T PRK07324        216 STNSMSKTYSLPGIRVGWIAANEEVIDILRKYRDYT------M-ICAGVFDDMLASLALEHRDAILERNRKIVRTNLAIL  288 (373)
T ss_pred             EEecchhhcCCccceeEEEecCHHHHHHHHHHhCcE------E-ecCChHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            7889999888655  899999776666555433211      1 123333333333445433334677777788888888


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCe
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTS  405 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~  405 (457)
                      .+.|.+ .+++.+..+ +.  +....+.++. .+..++...+   .||.+.+|..+.              .     .++
T Consensus       289 ~~~l~~-~~~~~~~~p-~g--g~~~~i~~~~~~~~~~~~~~ll~~~gv~v~pg~~F~--------------~-----~~~  345 (373)
T PRK07324        289 DEWVAK-EPRVSYVKP-KA--VSTSFVKLDVDMPSEDFCLKLLKETGVLLVPGNRFD--------------L-----EGH  345 (373)
T ss_pred             HHHHhc-CCCceEECC-Cc--eEEEEEEeCCCCCHHHHHHHHHHhcCEEEECccccC--------------C-----CCe
Confidence            888887 677766543 22  2233444442 3556676664   489999986432              1     269


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          406 IRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       406 iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +||+++.  +++.+++.+++|++++++
T Consensus       346 iRis~~~--~~~~l~~~l~rl~~~l~~  370 (373)
T PRK07324        346 VRIGYCC--DTETLKKGLKKLSEFLRE  370 (373)
T ss_pred             EEEEecC--CHHHHHHHHHHHHHHHHh
Confidence            9999975  589999999999998875

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2e-27  Score=237.04  Aligned_cols=330  Identities=15%  Similarity=0.171  Sum_probs=235.4

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T  128 (457)
                      ...+.|..+.+. +.++++.+++.+.+....    .   .|+  ......++++.+++++      +++++++++|+|++
T Consensus        31 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~---~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~  101 (393)
T PRK05764         31 RDVISLGAGEPDFDTPEHIKEAAIEALDDGK----T---KYT--PAAGIPELREAIAAKLKRDNGLDYDPSQVIVTTGAK  101 (393)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC----C---CcC--CCCChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcH
Confidence            345666665555 456888888888775321    0   011  1123466777777776      45677899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +|+.+++.++.    ++|+.|+++.+.|..+..+++..   |.+++.++.+.  ++.+|+++++++++++++++++++++
T Consensus       102 ~a~~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~  174 (393)
T PRK05764        102 QALYNAFMALL----DPGDEVIIPAPYWVSYPEMVKLA---GGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPS  174 (393)
T ss_pred             HHHHHHHHHhc----CCCCEEEecCCCCcchHHHHHHc---CCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCC
Confidence            99999999887    89999999999999888777665   99999999873  35689999999999899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC------cc-c--CCCCcccEEEeccccccCCCC--ceEEEEec
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI------PV-D--VEKWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~------~~-~--~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      ||+|.+.+   +++|+++|++||+++++|++++....      ++ .  ....+.++++.|++|.+|.+|  +|+++.++
T Consensus       175 NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~  254 (393)
T PRK05764        175 NPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPK  254 (393)
T ss_pred             CCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCH
Confidence            99999987   77899999999999999999863211      11 1  122346789999999888666  89999887


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++......       ....++.....++..+++...+.+++..++++++++.+.+.|++ ++++.+..+. .  +.
T Consensus       255 ~~~~~~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~-g--~~  323 (393)
T PRK05764        255 ELIKAMSKLQSH-------STSNPTSIAQYAAVAALNGPQDEVEEMRQAFEERRDLMVDGLNE-IPGLECPKPE-G--AF  323 (393)
T ss_pred             HHHHHHHHHHhh-------cccCCChHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCC-c--ce
Confidence            666655443321       11234444444444455422344677788888899999999998 7787765532 1  22


Q ss_pred             eEEEEEccc-c-----chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          353 NLNLSFAYV-E-----GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       353 ~~~~~~~~~-~-----~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                      ++.+.++.. .     ..++...+   .||.+.+|..|..                   .++|||+++.  ++++++.++
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~vRis~~~--~~~~~~~~i  382 (393)
T PRK05764        324 YVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA-------------------PGYVRLSYAT--SLEDLEEGL  382 (393)
T ss_pred             EEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC-------------------CCEEEEEecC--CHHHHHHHH
Confidence            333344321 1     25555544   4899988865421                   2899999874  699999999


Q ss_pred             HHHHHHHHHH
Q 040741          424 ELTVKQVEKL  433 (457)
Q Consensus       424 ~~l~~~~~~~  433 (457)
                      ++|.++++++
T Consensus       383 ~~l~~~~~~~  392 (393)
T PRK05764        383 ERIERFLESL  392 (393)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=2.2e-27  Score=228.91  Aligned_cols=324  Identities=18%  Similarity=0.169  Sum_probs=239.1

Q ss_pred             EecCCCCCC----CCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           60 YLDMQATTP----VDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        60 ~l~~~~~~~----~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+|+.++..    -.|++++++.+.++++ .|.+.+   +.-.+..+.+.++|+.||+++|.+.  +++-++|-.||..+
T Consensus        41 ~~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~gs---R~i~G~~~~h~~LE~~lA~f~g~e~--al~f~SGy~AN~~~  115 (388)
T COG0156          41 VLNFCSNDYLGLASHPELIEAAKAAIRRYGVGAGGS---RLISGTSDLHVELEEELADFLGAEA--ALLFSSGFVANLGL  115 (388)
T ss_pred             eEeeeccCcccccCCHHHHHHHHHHHHHhCCCCCCc---CcccCCcHHHHHHHHHHHHHhCCCc--EEEEcccchhHHHH
Confidence            444444442    3466778877777763 233322   2223444799999999999999875  55555566689999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNE  208 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~  208 (457)
                      +.+++    +++|.|+.+..+|.|..++++..   +++++.++++     |++.||+.+.+      +.++|+++.+.++
T Consensus       116 i~~l~----~~~dli~~D~lnHASiidG~rls---~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfSM  183 (388)
T COG0156         116 LSALL----KKGDLIFSDELNHASIIDGIRLS---RAEVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFSM  183 (388)
T ss_pred             HHHhc----CCCcEEEEechhhhhHHHHHHhC---CCcEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEeccccC
Confidence            99999    89999999999999999999877   9999999876     99999999965      3689999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      .|.+.||++|.+++++|+.++++|+||++|...         +.+....+||++++++|.+|..| |++.++....+.+.
T Consensus       184 dGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G-g~v~g~~~~~d~L~  262 (388)
T COG0156         184 DGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG-GYIAGSAALIDYLR  262 (388)
T ss_pred             CCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC-ceeeCcHHHHHHHH
Confidence            999999999999999999999999999987653         22322346899999999999886 99999887666554


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      ......     .++.+.|+...++...+++.+.+ ...++++.+++..+++..+..  .++.+....    .+++.+.+.
T Consensus       263 ~~ar~~-----ifStalpP~~aaa~~~al~~l~~-~~~~r~~L~~~~~~~~~~~~~--~~~~~~~s~----s~I~pv~~g  330 (388)
T COG0156         263 NRARPF-----IFSTALPPAVAAAALAALRILEE-GPERRERLQELAAFFRSLLKA--LGLVLLPSE----SPIIPVILG  330 (388)
T ss_pred             HhCCce-----eccCCCCHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHh--cCCccCCCC----CCeeeeEeC
Confidence            433221     34456777777788888888774 478888999999999966655  355442221    233333333


Q ss_pred             cc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          360 YV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       360 ~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .. ....+...|  +||.+..-.+.+.                +.+...||++++..+|++||+.+++++.+.
T Consensus       331 d~~~a~~~s~~l~~~Gi~v~~i~~PTV----------------p~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         331 DEERALEASRALLEEGIYVSAIRPPTV----------------PKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             CHHHHHHHHHHHHHCCeeEeeecCCCC----------------CCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            21 123333333  5777766544433                234479999999999999999999999864

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=4.2e-27  Score=236.12  Aligned_cols=338  Identities=15%  Similarity=0.114  Sum_probs=238.3

Q ss_pred             CCCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEE
Q 040741           55 AGRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~  123 (457)
                      ..+.|.|..+.++     +.++++.+++.+.+.....+        +|.......++|+.++++++      ++++++++
T Consensus        51 ~~~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~--------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~i  122 (430)
T PLN00145         51 PRPVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYN--------SYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYL  122 (430)
T ss_pred             CCCeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCC--------CCCCCccCHHHHHHHHHHHhhccCCCCChhhEEE
Confidence            4578888887664     45788999999887642111        11112346678888888874      36778999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEE
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~  201 (457)
                      |+|+|+|+.+++.++.    ++||+|+++.+.|+.+...+...   |.+++.++..  .++.+|++++++++++++++++
T Consensus       123 t~G~~~al~l~~~~l~----~~Gd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~  195 (430)
T PLN00145        123 TAGCAQAIEIIMSVLA----QPGANILLPRPGYPLYEARAVFS---GLEVRHFDLLPERGWEVDLEGVEALADENTVAMV  195 (430)
T ss_pred             eCCHHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEE
Confidence            9999999999999987    89999999999999987776665   9999998864  4567999999999999999999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cc-cc---CCCCcccEEEeccccccCCCC--ceEEE
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IP-VD---VEKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~-~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++++||||.+++   +++|+++|+++|+++|+|+++.-..   .+ ..   +.....-+++.|++|.|+.+|  +||++
T Consensus       196 i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~RlG~iv  275 (430)
T PLN00145        196 IINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRWVVPGWRLGWIA  275 (430)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEeccccccCCCCeeEEEEE
Confidence            9999999999998   7788999999999999999987321   11 11   122234578889999877666  99999


Q ss_pred             Eec-C-CCccc--cccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          270 MRR-R-PRIRV--EPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       270 ~~~-~-~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                      +.. + .+...  .......   . .....++.....++..+++. ..+.+++..++++++++.+.+.|++ ++++.+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~  350 (430)
T PLN00145        276 TCDPNGILKETKVVDSIRNY---L-NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKE-IKCITCPH  350 (430)
T ss_pred             EecchhhhhhhHHHHHHHHH---h-cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCc
Confidence            843 2 22110  0011000   0 00112344445555555543 2334788888999999999999988 77776532


Q ss_pred             CCCCcccceEEEEEcc-----c-cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          345 SMERRYIGNLNLSFAY-----V-EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      .+..  ..++.+.++.     . ++.+++..+   ++|.+.+|..+              |.     .+++||+++.  +
T Consensus       351 ~P~g--a~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~f--------------g~-----~~~lRis~~~--~  407 (430)
T PLN00145        351 KPEG--SMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSAL--------------GM-----KNWLRITFAI--D  407 (430)
T ss_pred             CCCe--eeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeCcccc--------------CC-----CCeEEEEeCC--C
Confidence            2322  2333333331     1 344555444   58999988643              21     2799999984  6


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 040741          416 EAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~~  435 (457)
                      .++++..+++|++++++.++
T Consensus       408 ~~~l~~al~rl~~~~~~~~~  427 (430)
T PLN00145        408 PPSLEDGLERLKSFCLRHAK  427 (430)
T ss_pred             HHHHHHHHHHHHHHHHHhcc
Confidence            89999999999999988764

>PRK07682 hypothetical protein; Validated

Probab=99.96  E-value=1.1e-27  Score=237.59  Aligned_cols=330  Identities=16%  Similarity=0.145  Sum_probs=232.1

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPK-EIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~-~i~~t~g~T  128 (457)
                      +.+.|+.+.+. +.++.+.+++.+.+....       ..  |.......++++.+++++    |.  +++ ++++|+|++
T Consensus        21 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~   91 (378)
T PRK07682         21 GVISLGVGEPDFVTPWNVREASIRSLEQGY-------TS--YTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGAS   91 (378)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChH
Confidence            45777776665 345667888877664311       00  111123445556666655    43  454 699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +|+.+++++++    ++|+.|++.++.|+.+...++..   |.+++.++.+  .++.+|+++++++++++++++++++++
T Consensus        92 ~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~  164 (378)
T PRK07682         92 QALDVAMRAII----NPGDEVLIVEPSFVSYAPLVTLA---GGVPVPVATTLENEFKVQPAQIEAAITAKTKAILLCSPN  164 (378)
T ss_pred             HHHHHHHHHhC----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCCCCHHHHHhhcCcccEEEEEECCC
Confidence            99999999988    89999999999999887766655   9999888875  346789999999999899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----c-cCCC-CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----V-DVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~-~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      ||||.+.+   +++|.++|++|++++++|++|+.....     + .... .+..+++.|++|.+|.+|  +|+++++++.
T Consensus       165 NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~  244 (378)
T PRK07682        165 NPTGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYF  244 (378)
T ss_pred             CCcCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHH
Confidence            99999987   788999999999999999998743211     0 1111 134688999999888666  9999998877


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++++.....       ....+.+.....++..+++.....+++.+++++++++++.+.|++ + ++.+..+ +.  ..++
T Consensus       245 i~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p-~g--~~~~  312 (378)
T PRK07682        245 SEAMLKIHQ-------YSMMCAPTMAQFAALEALRAGNDDVIRMRDSYRKRRNFFVTSFNE-I-GLTCHVP-GG--AFYA  312 (378)
T ss_pred             HHHHHHHHH-------hhccCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCCC-Ce--eEEE
Confidence            666654321       111133444444444455432234677888889999999999998 5 6655442 21  1222


Q ss_pred             EEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ...+.  ..+..++...+   +||.+.+|..|..                 ...+++||+++.  +.+++++++++|+++
T Consensus       313 ~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~~~  373 (378)
T PRK07682        313 FPSISSTGLSSEEFAEQLLLEEKVAVVPGSVFGE-----------------SGEGFIRCSYAT--SLEQLQEAMKRMKRF  373 (378)
T ss_pred             EEeccCCCCCHHHHHHHHHHhCCEEEcCchhhCc-----------------CCCCeEEEEeCC--CHHHHHHHHHHHHHH
Confidence            23332  24556676554   5899998875422                 113799999985  689999999999998


Q ss_pred             HHHH
Q 040741          430 VEKL  433 (457)
Q Consensus       430 ~~~~  433 (457)
                      ++++
T Consensus       374 l~~~  377 (378)
T PRK07682        374 VENK  377 (378)
T ss_pred             Hhhc
Confidence            8754

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.96  E-value=2.8e-27  Score=232.13  Aligned_cols=326  Identities=18%  Similarity=0.198  Sum_probs=229.1

Q ss_pred             ccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           51 GVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        51 ~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      .++|..+.+  -+-+.+++|++++++|.++...+.            ...+...++++.+++++|.+  ++++++|+|+|
T Consensus         9 ~~ina~g~~--t~~g~s~~~~~v~~a~~~~~~~~~------------~~~~~~~~~~~~~a~~~g~~--~~~~~~g~t~a   72 (363)
T TIGR01437         9 KVINASGKM--TILGVSTVSDEVADAQKRGAQNYF------------EIKELVNKTGEYIANLLGVE--DAVIVSSASAG   72 (363)
T ss_pred             eEEECCcEe--ecCCCCCCCHHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHHhhCCC--eEEEEcCHHHH
Confidence            345555543  334556799999999999975421            23478899999999999986  48999999999


Q ss_pred             HHHHHHHhhhhhcCCCC---------------EEEEcCCCCcchHHH-HHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741          131 NNVSIKGVMHFYKDKKR---------------HVITTQTEHKCVLDS-CRHLQQEGFEITYLPVGADGIVNLDELRAAIR  194 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~---------------~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~  194 (457)
                      ++++++++.    ++||               +||++.+.+..+... ...+...|+++++++.  ++.+|+++++++|+
T Consensus        73 l~~al~al~----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~--~~~~d~~~le~ai~  146 (363)
T TIGR01437        73 IAQSVAAVI----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGY--ANECSAEQLEAAIT  146 (363)
T ss_pred             HHHHHHHHh----cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcC--CCCCCHHHHHHhcC
Confidence            999999997    6777               888877433322101 1122345999999986  35689999999999


Q ss_pred             CCceEEE-EeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEec
Q 040741          195 PDTGLIS-VMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRR  272 (457)
Q Consensus       195 ~~t~li~-i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~  272 (457)
                      ++|++++ ++.++|++|.+.|+++|.++|++||+++++|++|+....  .....+.|++++|+|| +.||. .|+++.++
T Consensus       147 ~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~--~~~~~g~D~~~~S~~K~l~gp~-~G~l~~~~  223 (363)
T TIGR01437       147 EKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ--KYYRLGADLVIYSGAKAIEGPT-SGLVLGKK  223 (363)
T ss_pred             hhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCchH--HHHHcCCCEEEEeCCcccCCCc-eEEEEEcH
Confidence            9998766 566788999999999999999999999999999973211  1123468999999999 67787 69988876


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--RY  350 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~  350 (457)
                      +.++.+.+...+.+  +.++.++   ..++++.++++.+.+......++..++++++.+.|.+ ++++++..+.+.  ..
T Consensus       224 ~~i~~~~~~~~~~~--~~~~~~~---~~~~gl~aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~-i~g~~~~~~~~~~~~~  297 (363)
T TIGR01437       224 KYIEWVKLQSKGIG--RAMKVGK---ENILGLTAALEQYLSTGKESGAEMVAKLTPFIEALNT-LKGVSASIVQDEAGRD  297 (363)
T ss_pred             HHHHHHHhccCCCc--ceeccCH---HHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHhc-CCCeEEEEecCCCCCc
Confidence            66555544333221  2233334   3367777888877654344444555667789999999 899988743221  11


Q ss_pred             --cceEEEEE--ccccchHHHhccc--C--eEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          351 --IGNLNLSF--AYVEGESLLMGLK--E--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       351 --~~~~~~~~--~~~~~~~~~~~l~--~--i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                        ...+.+..  .+.++.++...|+  +  |.++.  +                   ....+.+|+.+.. ++++|+|.+
T Consensus       298 ~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~I~~r~--~-------------------~~~~~~~~l~~~~-~~~~e~~~~  355 (363)
T TIGR01437       298 IARAEIRFDESELGMTAADVVQALRQGEPAIYTRG--Y-------------------KANEGIIEIDPRS-VTGGQLDII  355 (363)
T ss_pred             CceEEEEEeccCCCCCHHHHHHHHhcCCCCEEEee--e-------------------eecCCeEEEEeec-CCHHHHHHH
Confidence              12223333  1467788888883  5  44432  1                   1123789999886 459999999


Q ss_pred             HHHHHHH
Q 040741          423 IELTVKQ  429 (457)
Q Consensus       423 ~~~l~~~  429 (457)
                      +++|++.
T Consensus       356 ~~~l~~~  362 (363)
T TIGR01437       356 VERIREI  362 (363)
T ss_pred             HHHHHHh
Confidence            9999875

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.96  E-value=3.9e-27  Score=235.42  Aligned_cols=332  Identities=16%  Similarity=0.158  Sum_probs=232.3

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ++++.++.    ..+|++.+++.+.+.....++..  ...-+...+.+.++++.+++++|.+  ..++.++|++|+..++
T Consensus        47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~--~~l~~~sG~~an~~ai  122 (402)
T TIGR01821        47 VTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE--SALVFTSGYVANDATL  122 (402)
T ss_pred             EEEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC--eEEEECchHHHHHHHH
Confidence            45555555    35689999999998764322221  1111222367889999999999964  3777788899999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---C-CceEEEEecccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---P-DTGLISVMAVNNEIGV  211 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---~-~t~li~i~~~~~~~G~  211 (457)
                      ..+...  .+++.|+++..+|.+....+...   |.++..++.+     |++++++.++   + ++++|++++++|++|.
T Consensus       123 ~~l~~~--~~~~~v~~~~~~h~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~  192 (402)
T TIGR01821       123 ATLAKI--IPGCVIFSDELNHASMIEGIRHS---GAEKFIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMDGD  192 (402)
T ss_pred             HHhhCC--CCCCEEEEcchHhHHHHHHHHHc---CCeEEEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence            887621  26788888888998888877654   8877666543     6777777764   3 5789999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCc-c--c-CC----CCcccEEEeccccccCCCCceEEEEecCCCcccccccc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIP-V--D-VE----KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-~--~-~~----~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      +.|+++|.++|++||+++++|++|++|... .  . ..    ...+|+++.+++|.+|..| |+++++++..+.+.....
T Consensus       193 ~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~i~~~~~~~~~l~~~~~  271 (402)
T TIGR01821       193 IAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG-GYIAASRKLIDAIRSYAP  271 (402)
T ss_pred             ccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC-ceeecCHHHHHHHHHhCc
Confidence            999999999999999999999999865321 1  1 00    1146899999999988876 888887765555443222


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-c
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-E  362 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  362 (457)
                      ++     ...++.++..++++.++++.+.+. +...++.+++.+++.+.|++ + ++.+..+.    .+++.+.+... .
T Consensus       272 ~~-----~~t~~~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~i~~i~~~~~~~  339 (402)
T TIGR01821       272 GF-----IFTTSLPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEA-L-GIPVIPNP----SHIVPVIIGDAAL  339 (402)
T ss_pred             Cc-----eecCcCCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCCC----CCEEEEEeCCHHH
Confidence            11     122345666677777888877654 55666778899999999988 4 66554432    33444444321 2


Q ss_pred             chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       363 ~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ..++...|   +||.+.+....+.                ..+..+|||+++..++++|||+++++|+++++++.
T Consensus       340 a~~~~~~L~~~~Gi~v~~~~~p~~----------------~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~~  398 (402)
T TIGR01821       340 CKKVSDLLLNKHGIYVQPINYPTV----------------PRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLG  398 (402)
T ss_pred             HHHHHHHHHhcCCEEEEeECCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            34555554   3888876432211                11236899999999999999999999999987653

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09105 putative aminotransferase; Provisional

Probab=99.96  E-value=5.2e-27  Score=231.26  Aligned_cols=316  Identities=18%  Similarity=0.228  Sum_probs=231.0

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ..+.++|+.+.+. ++++.+++++.+......        .|++.   ...++++.+++++|+++++|++|+|+++++.+
T Consensus        42 ~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~--------~Y~~~---~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~  110 (370)
T PRK09105         42 AEGAVFLNANECPLGPSPAARDAAARSAALSG--------RYDLE---LEDDLRTLFAAQEGLPADHVMAYAGSSEPLNY  110 (370)
T ss_pred             CCCcEEecCCCCCCCCCHHHHHHHHHHHHHhc--------CCCCc---hHHHHHHHHHHHhCcChhhEEEcCChHHHHHH
Confidence            3677999999887 678999999988764321        12211   26789999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      ++.++.    ++|+.|+++.++|+.+...++..   |.+++.++.+.++.+|++++++. .++++++++++++||||.+.
T Consensus       111 ~~~~l~----~~gd~Vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~-~~~~~~v~l~nP~NPTG~~~  182 (370)
T PRK09105        111 AVLAFT----SPTAGLVTADPTYEAGWRAADAQ---GAPVAKVPLRADGAHDVKAMLAA-DPNAGLIYICNPNNPTGTVT  182 (370)
T ss_pred             HHHHHc----CCCCEEEEeCCChHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHhc-CCCCCEEEEeCCCCCCCcCc
Confidence            999988    89999999999999998776665   99999999887778999999887 56789999999999999999


Q ss_pred             ChHHHHHHHHh--cCCcEEEehhhhc-CCCc--ccCCCCccc-EEEeccccccCCCC--ceEEEEecCCCccccccccCC
Q 040741          214 PMEEIGQICKE--FKIPFHTDAAQAL-GKIP--VDVEKWNVS-LMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       214 ~l~~i~~l~~~--~~v~li~D~a~~~-g~~~--~~~~~~~~D-i~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~  285 (457)
                      +.+++.++++.  +++++++|++|.. ...+  .++.....+ +++.|++|.||.+|  +|+++++++.++++...  +.
T Consensus       183 ~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~~~~i~~l~~~--~~  260 (370)
T PRK09105        183 PRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAAARPDLLAKLARF--GH  260 (370)
T ss_pred             CHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeeecCHHHHHHHHhc--CC
Confidence            98888777654  4899999999952 1111  111111223 66679999999777  99999987766665543  11


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                              ...+.....+...++.. .+.+++..++++++++++.+.|++ + ++.+..+ +   .+++.+.++ .+..+
T Consensus       261 --------~~~~~~~~~aa~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~-~---~~f~~~~~~-~~~~~  324 (370)
T PRK09105        261 --------NPLPVPAAAAGLASLRD-PKLVPQRRAENAAVREDTIAWLKK-K-GYKCTPS-Q---ANCFMVDVK-RPAKA  324 (370)
T ss_pred             --------CCcCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCCcCCC-C---CcEEEEeCC-CCHHH
Confidence                    13444444444444532 234677778888999999999988 4 6655432 1   333333333 34566


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +...|  +||.+  |..+.                  ...+++||+++   +++++++++++|++.+
T Consensus       325 l~~~L~~~gI~v--~~~~~------------------~~~~~~Ris~~---~~~~~~~l~~al~~~~  368 (370)
T PRK09105        325 VADAMAKQGVFI--GRSWP------------------IWPNWVRVTVG---SEEEMAAFRSAFAKVM  368 (370)
T ss_pred             HHHHHHHCCcEE--ecCCC------------------CCCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence            66666  68777  22121                  01279999988   4788999999988764

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.1e-27  Score=235.76  Aligned_cols=326  Identities=14%  Similarity=0.136  Sum_probs=230.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASP-KEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~-~~i~~t~g~  127 (457)
                      .+.+.|+.+.+. +.++.+.+++.+.+....        .++|. .....++++.++++++      +++ +++++|+|+
T Consensus        32 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~--------~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~  102 (399)
T PRK07681         32 HKMIDLSIGNPDMPPADFVREEMVHTANQKE--------SYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGS  102 (399)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhccc--------cCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCc
Confidence            455677666555 467788888887764311        11111 1234456666666653      466 689999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++++.+++.+++    ++||.|+++.+.|+.+...++..   |.+++.++.+.+  ..+|++++++++.+++++|+++++
T Consensus       103 ~~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P  175 (399)
T PRK07681        103 QDGLVHLPMVYA----NPGDIILVPDPGYTAYETGIQMA---GATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFP  175 (399)
T ss_pred             HHHHHHHHHHhC----CCCCEEEECCCCccchHHHHHhc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCC
Confidence            999999999888    89999999999999998877666   999999998743  357999999999889999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----ccc---CC-CCcccEEEeccccccCCCC--ceEEEEec
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVD---VE-KWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~---~~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +||||.+.+   +++|+++|++||++||+|++|+-...    ...   .. ..+..+++.|++|.+|.+|  +||+++++
T Consensus       176 ~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~~i~~~  255 (399)
T PRK07681        176 GNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGSRIGYMIGNE  255 (399)
T ss_pred             CCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeecccccCCccceeEEEecCH
Confidence            999999999   77788899999999999999973211    111   11 1234578889999888766  99999887


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++......       ...+.+.....++..+++.....+++..+.++++++.+.+.|++ . ++.+..+. .  +.
T Consensus       256 ~l~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~-~--g~  323 (399)
T PRK07681        256 EIVRALTQFKSN-------TDYGVFLPIQKAACAALRNGAAFCEKNRGIYQERRDTLVDGFRT-F-GWNVDKPA-G--SM  323 (399)
T ss_pred             HHHHHHHHHHhh-------cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC-e--ee
Confidence            766665443321       11134444444444455433334667777888889999999988 5 66654322 1  33


Q ss_pred             eEEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          353 NLNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       353 ~~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ++.+.++ ..+..++...+   +||.+.+|..|..                 ...+++||+++.  +.+++++++++|++
T Consensus       324 f~~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~~~~~l~~l~~  384 (399)
T PRK07681        324 FVWAEIPKGWTSLSFAYALMDRANVVVTPGHAFGP-----------------HGEGFVRIALVQ--DEEVLQQAVENIRN  384 (399)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCEEEeCChhhCc-----------------CCCCeEEEEecC--CHHHHHHHHHHHHH
Confidence            4444444 23455565555   5899998865421                 112799999983  68999999999987

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=4.8e-27  Score=232.48  Aligned_cols=316  Identities=17%  Similarity=0.114  Sum_probs=231.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.++|+.+.+. ++++.+.+++.+... .        +.|+.   ....++++.+++++|++++++++|+|+++++.++
T Consensus        52 ~~~i~l~~n~~p~~~~~~v~~a~~~~~~-~--------~~Yp~---~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~  119 (380)
T PLN03026         52 EDIVKLDANENPYGPPPEVLEALGNMKF-P--------YVYPD---PESRRLRAALAEDSGLESENILVGCGADELIDLL  119 (380)
T ss_pred             cceEEccCCCCCCCCCHHHHHHHHhhHh-h--------ccCCC---CCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHH
Confidence            467899988766 677888888865311 0        11111   1246799999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEecccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~  213 (457)
                      +.++.    ++|++|+++.+.|..+...++..   |++++.++.+.++.+|++++++++ ++++++|++++++||||.+.
T Consensus       120 ~~~~~----~~gd~Vlv~~P~y~~y~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~  192 (380)
T PLN03026        120 MRCVL----DPGDKIIDCPPTFGMYVFDAAVN---GAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSII  192 (380)
T ss_pred             HHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCC
Confidence            99887    89999999999987666555544   999999998777789999999999 78899999999999999999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCC---cc-cCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCcc
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKI---PV-DVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~---~~-~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      +.+++.++++.. +++++|++|.-...   .. .+...+..+++.|++|.||.+|  +|+++++++.++++......   
T Consensus       193 ~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~~~i~~l~~~~~~---  268 (380)
T PLN03026        193 SDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPLSIIEYLWRAKQP---  268 (380)
T ss_pred             CHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCHHHHHHHHHhcCC---
Confidence            999999999865 99999999863211   11 1222345688999999888766  89999987666555433321   


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESL  366 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  366 (457)
                            ...+.....++.++++. .+.+++..+++++.++++.+.|++ ++++.+..+  .  .+++.+.++ ..+...+
T Consensus       269 ------~~~~~~~q~aa~~aL~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~p~--~--~~f~~~~~~~~~~~~~~  336 (380)
T PLN03026        269 ------YNVSVAAEVAACAALSN-PKYLEDVKNALVEERERLFGLLKE-VPFLEPYPS--D--ANFILCRVTSGRDAKKL  336 (380)
T ss_pred             ------CCCCHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHHHHHH-CCCCeECCC--C--CeEEEEECCCCCCHHHH
Confidence                  13444555555555543 234677788888899999999998 765554321  1  445555554 2345666


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ...|  +||.++.+..                   ....+++||+++   +.+++++++++|++
T Consensus       337 ~~~l~~~gI~v~~~~~-------------------~~~~~~lRis~~---~~~~~~~l~~al~~  378 (380)
T PLN03026        337 KEDLAKMGVMVRHYNS-------------------KELKGYIRVSVG---KPEHTDALMEALKQ  378 (380)
T ss_pred             HHHHHHCCeEEEECCC-------------------CCCCCEEEEecC---CHHHHHHHHHHHHH
Confidence            6666  6898876532                   012379999998   47899999998875

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1e-26  Score=232.30  Aligned_cols=334  Identities=17%  Similarity=0.203  Sum_probs=233.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-----CCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-----GASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~~~~i~~t~g~T~  129 (457)
                      .+.++|+.+.+. +.++.+.+++.+.......+          .......++++.+++++     +++++++++|+|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y----------~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~   99 (397)
T PRK07568         30 IKVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAY----------SHSQGIPELREAFAKYYKKWGIDVEPDEILITNGGSE   99 (397)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHhcCCcCc----------CCCCCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHH
Confidence            356889988876 57888888887765322211          11134567788888877     467888999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC-C-CCHHHHHHhcCCCceEEEEeccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG-I-VNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~-~-~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      |+.+++.++.    ++|++|+++.+.|..+...++.   .|.+++.++.+ .++ . .|++++++++++++++|++++++
T Consensus       100 al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~---~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~~~~v~i~~p~  172 (397)
T PRK07568        100 AILFAMMAIC----DPGDEILVPEPFYANYNGFATS---AGVKIVPVTTKIEEGFHLPSKEEIEKLITPKTKAILISNPG  172 (397)
T ss_pred             HHHHHHHHhc----CCCCEEEEecCCCccHHHHHHH---cCCEEEEeecCcccCCCCCCHHHHHHhcCccceEEEEECCC
Confidence            9999999887    8999999999988877665544   49999999986 333 2 36799999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----Cc---ccCCC-CcccEEEeccccccCCCC--ceEEEEec-
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IP---VDVEK-WNVSLMSLSGHKIYGPKG--VGALYMRR-  272 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~---~~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~-  272 (457)
                      ||+|.+.+   +++|+++|+++|+++++|++++...    ..   ..... .+..+++.|++|.+|.+|  +|+++.++ 
T Consensus       173 NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~  252 (397)
T PRK07568        173 NPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGARIGCLISKNK  252 (397)
T ss_pred             CCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhccCCCcceEEEecCCH
Confidence            99999987   7789999999999999999986321    11   11211 123478889999777544  89998753 


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++......        ..+.+.....++..+++.....+++..+.++++++.+.+.|++ ++++.+..+ +.  +.
T Consensus       253 ~~~~~~~~~~~~--------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p-~g--~~  320 (397)
T PRK07568        253 ELIAAAMKLCQA--------RLSPPTLEQIGAAALLDTPESYFDEVREEYKKRRDILYEELNK-IPGVVCEKP-KG--AF  320 (397)
T ss_pred             HHHHHHHHHhhc--------cCCCCcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCC-Cc--ce
Confidence            444333222111        0133444445555555433345778888899999999999988 777665433 21  22


Q ss_pred             eEEEEEccccchHHHhcc--------cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          353 NLNLSFAYVEGESLLMGL--------KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       353 ~~~~~~~~~~~~~~~~~l--------~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      ++.+.++..+..++...+        +||.+.+|..+..              .+...+++|||+++.  +.++++.+++
T Consensus       321 ~~~~~l~~~~~~~~~~~l~~~~~~~~~gv~v~pg~~f~~--------------~~~~~~~~iRls~~~--~~~~~~~~~~  384 (397)
T PRK07568        321 YIIAKLPVDDAEDFAKWLLTDFNYNGETVMVAPASGFYA--------------TPGLGKNEIRIAYVL--NEEDLKRAME  384 (397)
T ss_pred             EEEEecCCCCHHHHHHHHHhhcccccceEEEeCchHhcC--------------CCCCCCCeEEEEEeC--CHHHHHHHHH
Confidence            334455433445555544        4799988865421              112223799999974  5799999999


Q ss_pred             HHHHHHHHHH
Q 040741          425 LTVKQVEKLR  434 (457)
Q Consensus       425 ~l~~~~~~~~  434 (457)
                      +|.++++++.
T Consensus       385 ~l~~~l~~~~  394 (397)
T PRK07568        385 ILKEALEKYN  394 (397)
T ss_pred             HHHHHHHHhh
Confidence            9999987654

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=2.9e-27  Score=233.17  Aligned_cols=318  Identities=17%  Similarity=0.150  Sum_probs=224.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE-eCChHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF-TSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~-t~g~T~a~~~  133 (457)
                      ++.++|+.+.+. .+++.+.+++.+.......+|..           ...++++.+++++|++++++++ ++|+++++.+
T Consensus        34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~  102 (361)
T PRK00950         34 ESIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVENIIVGGDGMDEVIDT  102 (361)
T ss_pred             cceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHH
Confidence            366788766544 57788999998877643323221           2378999999999999888999 6788889999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      +++++.    ++|++|+++.+.|..+...++..   |++++.++.+.++.+|+++++++++++++++++++++||+|.+.
T Consensus       103 ~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~p~nptG~~~  175 (361)
T PRK00950        103 LMRTFI----DPGDEVIIPTPTFSYYEISAKAH---GAKPVYAKREEDFSLDVDSVLNAITEKTKVIFLCTPNNPTGNLI  175 (361)
T ss_pred             HHHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCEEEEeecCCCCCcCHHHHHHHhccCCCEEEEeCCCCCCCCCc
Confidence            888887    89999999998887776655444   99999999777778999999999988899999999999999999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCC-c-cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccc
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKI-P-VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQE  288 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~-~-~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~  288 (457)
                      |.+++.++|+++|+++|+|++|+.... . .. ....+.-+++.|++|.+|.+|  +|+++++++.+..+......    
T Consensus       176 ~~~~l~~l~~~~~~~li~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~----  251 (361)
T PRK00950        176 PEEDIRKILESTDALVFVDEAYVEFAEYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPEWLIDYYMRAKTP----  251 (361)
T ss_pred             CHHHHHHHHHHCCcEEEEECchhhhCccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCHHHHHHHHHhcCC----
Confidence            999999999999999999999964321 0 01 112223477889999888666  89999887655544432211    


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHh
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLM  368 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (457)
                           ...+.....++..+++. .+.+++..++.+++++++.+.|.     +.+.. ..   .+++.+.+...+..++..
T Consensus       252 -----~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~l~-----~~~~~-~~---~~~i~~~~~~~~~~~~~~  316 (361)
T PRK00950        252 -----FSLTRLSQAAAIAALSD-KEYIEKSIEHGIKSREYLYNELP-----FKVYP-SE---ANFVLVDVTPMTAKEFCE  316 (361)
T ss_pred             -----CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHhhcC-----eeECC-Cc---ceEEEEECCCCCHHHHHH
Confidence                 12333344433334431 12245555566666665555442     33332 11   344555555455677776


Q ss_pred             cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          369 GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       369 ~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .|  +||.+.+|..+.                 ....++|||+++   +.+++++++++|++++
T Consensus       317 ~l~~~gv~v~~~~~f~-----------------~~~~~~lRis~~---~~~~~~~l~~~L~~il  360 (361)
T PRK00950        317 ELLKRGVIVRDCTSFR-----------------GLGDYYIRVSIG---TFEENERFLEILKEIV  360 (361)
T ss_pred             HHHHCCEEEeeCCccC-----------------CCCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence            66  689888765321                 112379999998   5789999999998865

>PLN02187 rooty/superroot1

Probab=99.96  E-value=7e-27  Score=236.06  Aligned_cols=341  Identities=15%  Similarity=0.183  Sum_probs=237.4

Q ss_pred             CCCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEE
Q 040741           55 AGRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~  123 (457)
                      ..+.++|..+.+.     +.++++.+++.+.+.....+        +|.......++|+.+++++      ++++++|++
T Consensus        65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~i  136 (462)
T PLN02187         65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGKGN--------SYGPGAGILPARRAVADYMNRDLPHKLTPEDIFL  136 (462)
T ss_pred             CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCCCC--------CCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEE
Confidence            3567888887554     34578889988877632111        1111234566788888877      357889999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEE
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~  201 (457)
                      |+|+++|+.+++.++.    ++||.|+++.+.|+.+...++..   |.+++.++..  .++.+|++++++++++++++++
T Consensus       137 t~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~  209 (462)
T PLN02187        137 TAGCNQGIEIVFESLA----RPNANILLPRPGFPHYDARAAYS---GLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMV  209 (462)
T ss_pred             eCCHHHHHHHHHHHhc----CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEeCccccCCccCHHHHHHhcCCCcEEEE
Confidence            9999999999999998    89999999999999987666555   9999999874  4568999999999999999999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhc---CCCcc-cCCC---CcccEEEeccccccCCCC--ceEEE
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQAL---GKIPV-DVEK---WNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~---g~~~~-~~~~---~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++++||||.+.+   +++|+++|++||++||+|++|+-   +..+. .+..   ...-+++.|++|.|+.+|  +||++
T Consensus       210 i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGlRiG~~v  289 (462)
T PLN02187        210 VINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGWKIGWIA  289 (462)
T ss_pred             EeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhcCCccceeEEEE
Confidence            9999999999998   77899999999999999999974   21111 1111   112477889999887666  99999


Q ss_pred             Eec-CCC----ccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Q 040741          270 MRR-RPR----IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN  343 (457)
Q Consensus       270 ~~~-~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  343 (457)
                      +.+ +.+    +.+........     ....++.....++.++++. ..+.+++.++.++++++++.+.|++ +++....
T Consensus       290 ~~~p~~~~~~~~~~~~~~~~~~-----~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~-~~~~~~~  363 (462)
T PLN02187        290 LNDPEGVFETTKVLQSIKQNLD-----VTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKD-IPCVVCP  363 (462)
T ss_pred             ecCchhHHHHHHHHHHHHHhcc-----ccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCCcCC
Confidence            853 211    12222111100     0112345555555555542 2345788888899999999999998 7654332


Q ss_pred             CCCCCcccceEEEEEcc-----c-cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          344 GSMERRYIGNLNLSFAY-----V-EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~-----~-~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                      ..+..  ..++.+.+..     . +..++...+   +||.+.+|..+              |.     .++|||+++.  
T Consensus       364 ~~P~g--g~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~f--------------g~-----~~~iRis~~~--  420 (462)
T PLN02187        364 KKPES--CTYLLTKLELSLMDNIKDDIDFCVKLAREENLVFLPGDAL--------------GL-----KNWMRITIGV--  420 (462)
T ss_pred             CCCCE--eEEEEeecChhhCCCCCCHHHHHHHHHhhCCEEEECcccc--------------CC-----CCeEEEEeCC--
Confidence            22221  2333333321     1 233444333   69999988644              21     2799999985  


Q ss_pred             CHHHHHHHHHHHHHHHHHHHhcChh
Q 040741          415 TEAEVDRAIELTVKQVEKLREMSPL  439 (457)
Q Consensus       415 t~edid~~~~~l~~~~~~~~~~~~~  439 (457)
                      ++++++..+++|.++++++.+....
T Consensus       421 ~~e~l~~al~rL~~~l~~~~~~~~~  445 (462)
T PLN02187        421 EAHMLEDALERLKGFCTRHAKKTET  445 (462)
T ss_pred             CHHHHHHHHHHHHHHHHHhhhcccc
Confidence            5899999999999999877655433

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.2e-27  Score=230.60  Aligned_cols=315  Identities=18%  Similarity=0.162  Sum_probs=231.5

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ..+.|+.+.+. ..++.+.+++.+.+......|.           ....++++.++++++++++++++|+|+++++.+++
T Consensus        30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p~-----------~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~   98 (359)
T PRK03158         30 KIVKLASNENPYGPSPKVKEAIAAHLDELALYPD-----------GYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMIS   98 (359)
T ss_pred             ceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCCC-----------CcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHH
Confidence            45677665554 4678899999887654211111           24678999999999998889999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      .++.    ++|+.|++..++|+.+...+...   |.++..++.+ ++.+|+++++++++++++++++++++||||.+.|.
T Consensus        99 ~~~~----~~gd~v~~~~p~y~~~~~~~~~~---g~~~~~~~~~-~~~~d~~~l~~~~~~~~~~v~i~~p~NPtG~~~~~  170 (359)
T PRK03158         99 RALL----NPGTNTVMAEPTFSQYRHNAIIE---GAEVREVPLK-DGGHDLEAMLKAIDEQTKIVWICNPNNPTGTYVNH  170 (359)
T ss_pred             HHHh----CCCCEEEEcCCCHHHHHHHHHHc---CCeEEEEecC-CCCcCHHHHHHhcCCCCCEEEEeCCCCCCCCCCCH
Confidence            8887    89999999999998877665554   9999999987 66789999999999899999999999999999999


Q ss_pred             HHHHHHHHh--cCCcEEEehhhhcCCC----cc--c-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccC
Q 040741          216 EEIGQICKE--FKIPFHTDAAQALGKI----PV--D-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       216 ~~i~~l~~~--~~v~li~D~a~~~g~~----~~--~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~  284 (457)
                      +++.++++.  +|+++++|++|.....    +.  . ....+..+++.|++|.+|.+|  +|+++++++.++++......
T Consensus       171 ~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~~  250 (359)
T PRK03158        171 EELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGYGIASEELIEKLNIARPP  250 (359)
T ss_pred             HHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhhehhcCCHHHHHHHHHhcCC
Confidence            999888887  5999999999964321    11  0 112345688899999888666  69999988766665443211


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                               ...+.....++..+++. .+.+++..+..++.++++.+.|.+ . ++.+..+ .   +.++.+.+. .+..
T Consensus       251 ---------~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~-~---g~~i~~~~~-~~~~  313 (359)
T PRK03158        251 ---------FNTTRIAQYAAIAALED-QAFLKECVEKNAEGLEQYYAFCKE-Y-GLFYYPS-Q---TNFIFVDTG-RDAN  313 (359)
T ss_pred             ---------CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeeCCC-c---CcEEEEECC-CCHH
Confidence                     13455555555555532 123556666777888888888888 5 6655432 1   334444443 3456


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ++...|  +||.+.+|..+.              .     .++|||+++   +.+++++++++|+++
T Consensus       314 ~~~~~l~~~gv~v~~g~~f~--------------~-----~~~iRi~~~---~~~~~~~l~~al~~~  358 (359)
T PRK03158        314 ELFEALLKKGYIVRSGAALG--------------F-----PTGVRITIG---LKEQNDKIIELLKEL  358 (359)
T ss_pred             HHHHHHHHCCeEEeeCCCCC--------------C-----CCeEEEecC---CHHHHHHHHHHHHHh
Confidence            666665  699999886431              1     279999988   589999999999875

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.96  E-value=2.9e-28  Score=217.10  Aligned_cols=323  Identities=21%  Similarity=0.263  Sum_probs=233.8

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ....+.|..+..+.+.+++.++|.+....        ...||.  ++...++|+.+|+++|.++  .+|++|||++|.++
T Consensus        20 ~~~~vDLRSDTvT~PTdeMr~am~eA~vg--------DdVyGe--D~tt~rLE~~vA~l~GKEA--gLFv~SGTmgNlla   87 (384)
T KOG1368|consen   20 THRSVDLRSDTVTVPTDEMRRAMAEASVG--------DDVYGE--DPTTNRLEQRVAELFGKEA--GLFVPSGTMGNLLA   87 (384)
T ss_pred             eeeccccccccccCChHHHHHHHhhcccC--------cccccC--CccHHHHHHHHHHHhCccc--eeeecccccccHHH
Confidence            35567888888888999999999988643        122233  3578899999999999887  99999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--------CceEEEEeccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--------DTGLISVMAVN  206 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--------~t~li~i~~~~  206 (457)
                      ++..+.   ++|.+||+.+..|...+++.......|+.++.+..+.+|.+|++++|++|+.        -|++||+++.+
T Consensus        88 Im~Hc~---~rg~eii~gd~~HI~~~E~gg~s~l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~  164 (384)
T KOG1368|consen   88 IMVHCH---QRGSEIIVGDRAHIHRYEQGGISQLAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTH  164 (384)
T ss_pred             HHHHhc---CCCceEEeccchheeehhccChhhhccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccc
Confidence            999996   7999999999999999998888777899999999999999999999999973        37999999999


Q ss_pred             cccc-cccChH---HHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--cccEEEeccccccC-CCCceEEEEecCCCc
Q 040741          207 NEIG-VIQPME---EIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVSLMSLSGHKIYG-PKGVGALYMRRRPRI  276 (457)
Q Consensus       207 ~~~G-~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~  276 (457)
                      +.+| .++|++   +|.++|+++|+.+|+|+|.-+.+.   ...+.++  .+|.++.|++|..| |-| .+++++++.+.
T Consensus       165 ~~~Gg~vlPle~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVG-SViVG~k~FI~  243 (384)
T KOG1368|consen  165 NNCGGKVLPLEELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVG-SVIVGSKDFID  243 (384)
T ss_pred             cccCceEeeHHHHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcc-cEEEccHHHHH
Confidence            9987 888855   688899999999999999865321   2223333  47999999999555 554 56666665555


Q ss_pred             ccccc--ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          277 RVEPL--INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       277 ~~~~~--~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      +.+..  ..|||.       ..+..++++...++..-...+....++.+    .+.+.+.. .+++.+..+...  .+++
T Consensus       244 kA~~~RKalGGGm-------RQsGvLaaaaLval~~~~~~L~~dHk~A~----~lAe~~~~-~~~i~v~v~a~e--tNiv  309 (384)
T KOG1368|consen  244 KARHFRKALGGGM-------RQSGVLAAAALVALDENVPLLRADHKRAK----ELAEYINT-PEEIRVEVPAVE--TNIV  309 (384)
T ss_pred             HHHHHHHHhcCch-------hHHHHHHHHHHHHhhcchHHHHHHHHHHH----HHHHHhcc-ccceeeecchhh--ccee
Confidence            44322  223332       12222333333333322223444444444    44455555 566777554222  2333


Q ss_pred             E--EEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          355 N--LSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       355 ~--~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +  +.-+..+.+.+...+  .||.+..|..                       .++|+.+.+-+|.+++++++.++.+.+
T Consensus       310 ~~~l~q~~~~~~~l~~~~~k~gi~lm~~~s-----------------------~r~Rivlh~Qvt~~~ve~~~~~~~k~~  366 (384)
T KOG1368|consen  310 NMVLCQARLTAEELCKFLEKNGILLMGGAS-----------------------RRIRIVLHHQVTDEDVEYVKSVLSKKF  366 (384)
T ss_pred             eeecccccCCHHHHHHHHHHCCeEEeeccc-----------------------cceEEEEEEecCHHHHHHHHHHHHHHH
Confidence            3  333567788888888  5777765531                       679999999999999999999995444

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=6.2e-27  Score=230.16  Aligned_cols=319  Identities=17%  Similarity=0.207  Sum_probs=231.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ++.++|+.+.+. ++++.+.+++.+.+... ..+|.           ....++++.++++++++++++++|+|+++++.+
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~y~~-----------~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~   92 (353)
T PRK05387         24 AKLIKLNTNENPYPPSPKVLEAIRAALGDDLRLYPD-----------PNADALRQAIAAYYGLDPEQVFVGNGSDEVLAH   92 (353)
T ss_pred             cceeeccCCCCCCCCCHHHHHHHHHHhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHH
Confidence            467899888877 46789999998876531 11111           123689999999999999999999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      ++.++.    ++||+|+++.+.|+.+...++..   |.+++.++.+.++.+|++++++    .++++++++++||||.+.
T Consensus        93 ~~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~----~~~~v~~~~P~NPtG~~~  161 (353)
T PRK05387         93 AFLAFF----NHDRPLLFPDITYSFYPVYAGLY---GIPYEEIPLDDDFSIDVEDYLR----PNGGIIFPNPNAPTGIAL  161 (353)
T ss_pred             HHHHhc----CCCCEEEEeCCCHHHHHHHHHHc---CCEEEEeecCCCCCCCHHHHHh----cCCEEEEeCCCCCCCCCC
Confidence            999998    89999999999997776655544   9999999988778899999874    457889999999999999


Q ss_pred             ChHHHHHHHHhc-CCcEEEehhhhc-CCCc-cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCcc
Q 040741          214 PMEEIGQICKEF-KIPFHTDAAQAL-GKIP-VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       214 ~l~~i~~l~~~~-~v~li~D~a~~~-g~~~-~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      |.+++.++++.+ ++++++|++|.- +... .. ....+..+++.|++|.+|.+|  +|+++.+++.++++......   
T Consensus       162 ~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~~~~l~~~~~~---  238 (353)
T PRK05387        162 PLAEIERILAANPDSVVVIDEAYVDFGGESAIPLIDRYPNLLVVQTFSKSRSLAGLRVGFAIGHPELIEALNRVKNS---  238 (353)
T ss_pred             CHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHHhhCCCEEEEEehhHhhcchhhhceeeecCHHHHHHHHHhhcc---
Confidence            999999999876 999999999852 1111 11 112244689999999877555  99999887766655443211   


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLL  367 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (457)
                         ....+.+.....++..++.. .+.+++..++++++++++.+.|++ + ++.+..+  .  .+++.+.++..+..++.
T Consensus       239 ---~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~--~--~~~~~~~~~~~~~~~~~  308 (353)
T PRK05387        239 ---FNSYPLDRLAQAGAIAAIED-EAYFEETRAKVIATRERLVEELEA-L-GFEVLPS--K--ANFVFARHPSHDAAELA  308 (353)
T ss_pred             ---CCCCCcCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC--c--CcEEEEECCCCCHHHHH
Confidence               11224555555555555532 234677788888999999999998 5 6665432  1  34445555544556677


Q ss_pred             hcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          368 MGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       368 ~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +.|  +||.+..   +..                ....+++||+++   +.+++++++++|++++.
T Consensus       309 ~~l~~~gi~v~~---~~~----------------~~~~~~iRis~~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        309 AKLRERGIIVRH---FNK----------------PRIDQFLRITIG---TDEEMEALVDALKEILA  352 (353)
T ss_pred             HHHHHCCEEEEE---CCC----------------CCCCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence            666  6888752   110                012379999997   57999999999988754

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.96  E-value=1.7e-26  Score=207.06  Aligned_cols=338  Identities=14%  Similarity=0.188  Sum_probs=266.0

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~  138 (457)
                      .|-.+|+.-+++++++||......+          ..........++.+-+...|..... -.++..+|+.+++.++-.+
T Consensus        19 ~L~gPGPsnl~~~V~~A~~~~~lgh----------~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~   88 (385)
T KOG2862|consen   19 TLLGPGPSNLSGRVQEAMSRPSLGH----------MSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL   88 (385)
T ss_pred             eeecCCCcCCCHHHHHhhcCCcccc----------CCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh
Confidence            3666677789999999988765432          1345567888999999999986533 3888889999999999999


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccC-hH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQP-ME  216 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~-l~  216 (457)
                      .    .|||.|++....-.+. .++..+++.|++|.+++.+.+..+.++++++++.. ++++|+++|..+.||+..| ++
T Consensus        89 l----ePgd~vLv~~~G~wg~-ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~~~  163 (385)
T KOG2862|consen   89 L----EPGDNVLVVSTGTWGQ-RAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDLLA  163 (385)
T ss_pred             c----CCCCeEEEEEechHHH-HHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCccccccchHHH
Confidence            9    8999998866554443 34566777899999999998889999999999976 4689999999999999999 77


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccC-----------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING-----------  284 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~-----------  284 (457)
                      .+.++|++|+.++++|.+.++|..++.+++|++|+.....+| +.+|+|.+.+..+++..++++....+           
T Consensus       164 ~~g~lc~k~~~lllVD~VaSlggt~F~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~  243 (385)
T KOG2862|consen  164 ISGELCHKHEALLLVDTVASLGGTEFEMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSFYFDILRL  243 (385)
T ss_pred             HHHHHhhcCCeEEEEechhhcCCccceehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEEEEeHHhh
Confidence            788999999999999999999999999999999999999999 56699999999998766665422221           


Q ss_pred             ---C--ccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceEEEE
Q 040741          285 ---G--GQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNLNLS  357 (457)
Q Consensus       285 ---~--~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~  357 (457)
                         |  ..+.+.+..|++...++++.+|+..+.+ ++++..++.++++++++..|++  .|++... +++.+.+....+.
T Consensus       244 ~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~--~GLq~fv~~e~~rlptvttv~  321 (385)
T KOG2862|consen  244 GNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEA--LGLQLFVVDEELRLPTVTTVK  321 (385)
T ss_pred             cchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccceecChhhccCcceeee
Confidence               1  1223556779999999999999998765 6999999999999999999999  5777653 3444555555555


Q ss_pred             Ec-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHH
Q 040741          358 FA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       358 ~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~  432 (457)
                      .+ +++..++...+   .++.+..|..                   +..+..+||+.... -+.|.|+..++.|+.++.+
T Consensus       322 vp~gvDw~dVv~~~~~~~~vei~gglg-------------------~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq~  382 (385)
T KOG2862|consen  322 VPYGVDWKDVVAYAMSHYVVEIGGGLG-------------------PTVGKVFRIGLLGCNANVEYIDNVVELLKLALQR  382 (385)
T ss_pred             cCCCCCHHHHHHHHHHhcCEEeccccC-------------------CCcccEEEEEEeeccCCcHHHHHHHHHHHHHHhh
Confidence            53 46666666655   2444443322                   23348999997665 4688999999999888865


Q ss_pred             H
Q 040741          433 L  433 (457)
Q Consensus       433 ~  433 (457)
                      -
T Consensus       383 ~  383 (385)
T KOG2862|consen  383 K  383 (385)
T ss_pred             c
Confidence            3

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=4.2e-27  Score=231.48  Aligned_cols=314  Identities=16%  Similarity=0.143  Sum_probs=230.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+.|+.+.+. ++++++++++.+.+.....+|.           ....++++.+++++|++++++++|+|+++++.++
T Consensus        29 ~~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~-----------~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~   97 (366)
T PRK01533         29 HSFVKLASNENPFGCSPRVLDELQKSWLDHALYPD-----------GGATTLRQTIANKLHVKMEQVLCGSGLDEVIQII   97 (366)
T ss_pred             CceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence            466889888777 6889999999887654321221           2356799999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +.++.    ++|+.|++..++|+.+...++..   |.+++.++.+ ++.+|+++++++++++++++++++++||||.+.+
T Consensus        98 ~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~-~~~~d~~~l~~~~~~~~~~v~i~~P~NPTG~~~~  169 (366)
T PRK01533         98 SRAVL----KAGDNIVTAGATFPQYRHHAIIE---GCEVKEVALN-NGVYDLDEISSVVDNDTKIVWICNPNNPTGTYVN  169 (366)
T ss_pred             HHHhc----CCCCEEEEcCCcHHHHHHHHHHc---CCEEEEeecC-CCCcCHHHHHHHhCcCCcEEEEeCCCCCCCCCcC
Confidence            99988    89999999999998888877665   9999999986 4568999999999989999999999999999999


Q ss_pred             hHHHHHH---HHhcCCcEEEehhhhcCCC------ccc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccc
Q 040741          215 MEEIGQI---CKEFKIPFHTDAAQALGKI------PVD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       215 l~~i~~l---~~~~~v~li~D~a~~~g~~------~~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~  282 (457)
                      .+++.++   |++++ ++++|+++.-...      ... +...+..+++.|++|.||.+|  +|+++++++.++++....
T Consensus       170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~i~~~~~~~~l~~~~  248 (366)
T PRK01533        170 DRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLNVVR  248 (366)
T ss_pred             HHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHhHHhCCHHHHHHHHHhc
Confidence            6665555   44555 6778999862111      011 112234588899999888666  899998877666554432


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE  362 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (457)
                      ..         ...+.....++..+++. .+..+...+..++.++++.+.++. + ++.+..+    ..+++.+.++  +
T Consensus       249 ~~---------~~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~r~~~~~~l~~-~-g~~~~~~----~~nf~~~~~~--~  310 (366)
T PRK01533        249 LP---------FNVSSLAQKAATIAFGD-DEFIEEIVRVNTEGLRQYESFCKE-N-EIPFYQS----QTNFIFLPVE--N  310 (366)
T ss_pred             CC---------CCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-C-CCccCCC----cCcEEEEeCC--C
Confidence            11         24565666666556642 223556667777788888888877 4 5655433    1445555543  4


Q ss_pred             chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       363 ~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ...+...|  +||.+++   |                     .++|||+++.   .++.++++++|++.++-.+
T Consensus       311 ~~~~~~~l~~~GI~Vr~---~---------------------~~~iRis~~~---~~~~~~l~~al~~~~~~~~  357 (366)
T PRK01533        311 GGEIYEACAHAGFIIRP---F---------------------PNGVRITVGT---REQNEGVISVLQQHFENKK  357 (366)
T ss_pred             HHHHHHHHHHCCcEEcc---C---------------------CCceEEeCCC---HHHHHHHHHHHHHHHHhcc
Confidence            45666665  6888874   1                     1689999984   8999999999998876443

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=230.34  Aligned_cols=325  Identities=15%  Similarity=0.073  Sum_probs=226.0

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T  128 (457)
                      +.+.|..+.+. +.++++++++.+..... ..++.          .....++++.+++++      +++++++++|+|++
T Consensus        30 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~~~~~~~~~i~it~G~~   99 (384)
T PRK06348         30 DIIDLSLGDPDLITDESIINAAFEDAKKGHTRYTD----------SGGDVELIEEIIKYYSKNYDLSFKRNEIMATVGAC   99 (384)
T ss_pred             CcEEcCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC----------CCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCChH
Confidence            44666665555 44567777665544321 11111          122345666666666      45788999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +|+.+++.++.    ++|+.|+++.+.|+.+...+..+   |.+++.++..  .++.+|++++++++++++++|++++++
T Consensus       100 ~al~~~~~~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~  172 (384)
T PRK06348        100 HGMYLALQSIL----DPGDEVIIHEPYFTPYKDQIEMV---GGKPIILETYEEDGFQINVKKLEALITSKTKAIILNSPN  172 (384)
T ss_pred             HHHHHHHHHhc----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEEeCCC
Confidence            99999999998    89999999999999998888776   9899888864  344689999999998899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cccc---CCC-CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      ||||.+.+   +++|.++|++||++|++|++++-..   ....   +.. .+..+++.|++|.+|.+|  +|+++++++.
T Consensus       173 NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~  252 (384)
T PRK06348        173 NPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYI  252 (384)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHH
Confidence            99999988   6778888999999999999987321   1111   111 234588889999877544  8999998766


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      +.++.......       ..+.+.....++..++......+++.++.++++++++.+.|.+ ++++.+..+ +.  +.++
T Consensus       253 ~~~~~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~~~p-~g--g~~~  321 (384)
T PRK06348        253 IETAKIINEGI-------CFSAPTISQRAAIYALKHRDTIVPLIKEEFQKRLEYAYKRIES-IPNLSLHPP-KG--SIYA  321 (384)
T ss_pred             HHHHHHHHHhc-------cCCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhc-CCCceeccC-Ce--eEEE
Confidence            55544333211       1134444455555555443334677788888889999999988 777665542 21  2233


Q ss_pred             EEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          355 NLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       355 ~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+.++  +.+..++...+   .||.+.+|..+..                 ...++|||+++  .+.++++.++++|++
T Consensus       322 ~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~--~~~~~l~~al~~l~~  381 (384)
T PRK06348        322 FINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGE-----------------SGEGYIRLACT--VGIEVLEEAFNRIEK  381 (384)
T ss_pred             EEecccCCCCHHHHHHHHHHhCCEEEcCchhhcc-----------------CCCCeEEEEec--CCHHHHHHHHHHHHh
Confidence            44454  34566666654   4899998875421                 12379999996  368888888888764

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1.6e-26  Score=228.44  Aligned_cols=319  Identities=18%  Similarity=0.161  Sum_probs=228.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+.|..+.+. .+++.+.+++.+.......+|..           ...++++.+++++|++++++++|+|+++++.++
T Consensus        32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~  100 (367)
T PRK02731         32 ADIIKLASNENPLGPSPKAIEAIRAAADELHRYPDG-----------SGFELKAALAEKFGVDPERIILGNGSDEILELL  100 (367)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            344566554333 46788999998877543222221           135799999999999888999999999999998


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +.++.    ++|+.|+++.+.|..+...++.   .|.+++.++.+ ++.+|++++++++++++++|++++++||+|.+.|
T Consensus       101 ~~~l~----~~gd~vl~~~p~y~~~~~~~~~---~g~~~~~~~~~-~~~~~~~~l~~~~~~~~~~v~l~~p~nptG~~~~  172 (367)
T PRK02731        101 ARAYL----GPGDEVIYSEHGFAVYPIAAQA---VGAKPVEVPAK-DYGHDLDAMLAAVTPRTRLVFIANPNNPTGTYLP  172 (367)
T ss_pred             HHHhc----CCCCEEEEecCCHHHHHHHHHH---cCCeEEEeccc-CCCCCHHHHHHHhCCCCcEEEEeCCCCCCCcCCC
Confidence            88887    8999999999998766655544   49999999874 5678999999999989999999999999999999


Q ss_pred             hHHHHHHHHhc--CCcEEEehhhhcCCC------cccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCcccccccc
Q 040741          215 MEEIGQICKEF--KIPFHTDAAQALGKI------PVDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       215 l~~i~~l~~~~--~v~li~D~a~~~g~~------~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~  283 (457)
                      .+++.++++.+  ++++++|++|.....      .++. ......+++.|++|.+|.+|  +|+++++++.++++.....
T Consensus       173 ~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~~~~l~~~~~  252 (367)
T PRK02731        173 AEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEIIDALNRVRQ  252 (367)
T ss_pred             HHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHHHHHHHHccC
Confidence            99999998875  899999999864321      1111 11123577889999887655  7999998876665544321


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-ccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVE  362 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  362 (457)
                      .         ...+.....++..+++. ...+++..+..+++.+++.+.|++ . ++.+.. +.   ..++.+.++ ..+
T Consensus       253 ~---------~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-~~---g~~~~i~~~~~~~  316 (367)
T PRK02731        253 P---------FNVNSLALAAAVAALDD-DAFVEKSRALNAEGMAWLTEFLAE-L-GLEYIP-SV---GNFILVDFDDGKD  316 (367)
T ss_pred             C---------CCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCC-CC---ceEEEEECCCCCC
Confidence            1         12233444433334431 123677788888889999999988 5 665542 11   445555553 235


Q ss_pred             chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       363 ~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ..++...|  +||.+.++..+              |     ..++||++++   +.+++++++++|+++++
T Consensus       317 ~~~~~~~L~~~gI~v~~~~~~--------------~-----~~~~iRis~~---~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        317 AAEAYQALLKRGVIVRPVAGY--------------G-----LPNALRITIG---TEEENRRFLAALKEFLA  365 (367)
T ss_pred             HHHHHHHHHHCCEEEEeCCCC--------------C-----CCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence            56666666  79988876432              1     1278999997   58999999999998764

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.6e-26  Score=212.72  Aligned_cols=340  Identities=16%  Similarity=0.163  Sum_probs=254.0

Q ss_pred             CcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeC
Q 040741           57 RPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKEIIFTS  125 (457)
Q Consensus        57 ~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~~t~  125 (457)
                      ..|-|.++-++     +.++++.+|+.+.+++.-+|        +|.....+..+|+.+|++++-      +++++++|+
T Consensus        62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N--------~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~lts  133 (447)
T KOG0259|consen   62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGN--------GYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTS  133 (447)
T ss_pred             eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCC--------CcCCccccHHHHHHHHHHhhcCCCCccCcCceEEec
Confidence            45666665555     46799999999999876555        333445788899999999753      456799999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |.++|+++++.++.    +||..|+++++.|+-+..-+.+.   |++|++++.  +.++.+|++.+|++++++|..+++.
T Consensus       134 GC~qAIe~~i~~LA----~p~aNILlPrPGfp~Y~~~a~~~---~lEVR~ydlLPe~~weIDL~~veal~DENT~Aivvi  206 (447)
T KOG0259|consen  134 GCSQAIELAISSLA----NPGANILLPRPGFPLYDTRAIYS---GLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVI  206 (447)
T ss_pred             cchHHHHHHHHHhc----CCCCceecCCCCCchHHHhhhhc---CceeEeecccCcccceechHHHHHhhccCeeEEEEe
Confidence            99999999999999    99999999999999988777776   999999876  4678999999999999999999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhh---cCCCccc----CCCCcccEEEecccc-ccCCC-CceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQA---LGKIPVD----VEKWNVSLMSLSGHK-IYGPK-GVGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~---~g~~~~~----~~~~~~Di~~~s~~K-~~g~~-G~G~l~~~  271 (457)
                      +++||+|.++.   |++|+++|+++++++|.|++|.   +|..++-    +...-+-+.+++.+| |+-|. .+||+++.
T Consensus       207 NP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~h  286 (447)
T KOG0259|consen  207 NPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIALH  286 (447)
T ss_pred             CCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEEe
Confidence            99999999988   8999999999999999999996   3444331    222234567888999 76543 49999998


Q ss_pred             cCCCcccccccc-CCccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          272 RRPRIRVEPLIN-GGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       272 ~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                      +.. ..++.... -+....--....|+.....|+-..++...++ +.....-++.+++...+.|++ +|++..+..|++.
T Consensus       287 D~~-gvf~~~~~~q~~~~~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~-IP~l~cp~kPeg~  364 (447)
T KOG0259|consen  287 DPR-GVFRDTKVVQGIKNFLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKD-IPCLTCPVKPEGC  364 (447)
T ss_pred             ccc-ccccchHHHHHHHHHHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhc-CCCcccCcCCCcc
Confidence            742 22221110 0000000112244555555555555544443 778888889999999999999 9999977777765


Q ss_pred             ccceEEEEEc---c-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          350 YIGNLNLSFA---Y-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       350 ~~~~~~~~~~---~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                      ...++.+.+.   . .++.+++..|   +.+.+-+|.++              |..     +|+|+++.-  ..+.++++
T Consensus       365 mylmv~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af--------------~~~-----nw~Ri~i~~--~~~~leea  423 (447)
T KOG0259|consen  365 MYLMVKLNLSLFPDIEDDVDFCQKLAREESVICLPGQAF--------------GLK-----NWLRIVITV--EEEMLEEA  423 (447)
T ss_pred             eEEEeccchhhhccccccHHHHHHHhhhcceEEeccccc--------------cCC-----CeEEEEEcc--ChHHHHHH
Confidence            5555544443   2 2456777777   68888888643              333     899999985  66899999


Q ss_pred             HHHHHHHHHHHH
Q 040741          423 IELTVKQVEKLR  434 (457)
Q Consensus       423 ~~~l~~~~~~~~  434 (457)
                      +++|+++.++.-
T Consensus       424 ~~Rik~Fc~RH~  435 (447)
T KOG0259|consen  424 FSRIKEFCDRHS  435 (447)
T ss_pred             HHHHHHHHHhhh
Confidence            999999998764

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.96  E-value=1.3e-26  Score=230.41  Aligned_cols=326  Identities=16%  Similarity=0.167  Sum_probs=225.9

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPK-EIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~-~i~~t~g~T  128 (457)
                      +.+.|+.+.+. +.++.+.+++.+.+...  .    .+.|+  ......++++.+++++    |.  +++ ++++|+|++
T Consensus        30 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~Y~--~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~  101 (383)
T TIGR03540        30 DVISLGIGDPDLPTPKHIVEALCKAAENP--E----NHRYP--SYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSK  101 (383)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhCC--C----CCCCC--CCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcH
Confidence            44666666555 45788889988876421  0    01111  1112345566666654    44  444 589999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-C-CCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-D-GIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~-~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +++.+++..++    ++|++|++..+.|+.+...++.+   |.+++.++.+. + ..+|++++++++.+++++|++++++
T Consensus       102 ~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~  174 (383)
T TIGR03540       102 EGIAHIPLAFV----NPGDIVLVPDPGYPVYRIGTLFA---GGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPN  174 (383)
T ss_pred             HHHHHHHHHhC----CCCCEEEEeCCCCcchHHHHHhc---CCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCC
Confidence            99999999988    89999999999999998877666   99999999873 2 4579999999998899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccC---CC-CcccEEEeccccccCCCC--ceEEEEecC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDV---EK-WNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~---~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      ||||.+.+   +++|+++|++||+++++|++|+-..    .+..+   .. .+..+++.|++|.||.+|  +|+++.+++
T Consensus       175 NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~i~~~~  254 (383)
T TIGR03540       175 NPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGWRIGMAVGNAD  254 (383)
T ss_pred             CCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCccceeeEEeCCHH
Confidence            99999999   6889999999999999999997321    11111   11 134577889999998777  999998877


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      .++++......      ... ..+.+...++..+++...+.+++..+.++++++.+.+.|++ . ++.+..+..   ..+
T Consensus       255 l~~~~~~~~~~------~~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~---~~~  322 (383)
T TIGR03540       255 LIAGLGKVKTN------VDS-GVFQAIQYAAIAALNGPQDVVKEIRKIYQRRRDLLLEALKK-I-GIDVEKPKA---TFY  322 (383)
T ss_pred             HHHHHHHHHHh------ccc-CCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCEecCCCc---ceE
Confidence            66655443221      111 22333344444455433344677788889999999999998 5 676654321   222


Q ss_pred             EEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          354 LNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       354 ~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      +.+.++ ..+..++...+   +||.+.+|..|..                 ...+++||+++.  +.++++..+++|++
T Consensus       323 ~~~~l~~~~~~~~~~~~ll~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~~  382 (383)
T TIGR03540       323 VWVPVPEGYTSAEFAARLLEETGVVVTPGVGFGE-----------------YGEGYIRISLTV--PDERLEEAVARIKK  382 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCEEEecchhhCc-----------------cCCCeEEEEecC--CHHHHHHHHHHHhh
Confidence            344443 33456666654   5899998875521                 112799999974  57777777776653

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.96  E-value=2.4e-26  Score=236.20  Aligned_cols=334  Identities=15%  Similarity=0.130  Sum_probs=229.0

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeC
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~  125 (457)
                      .+.+.|+.+.+.    +.|+++.+++.+.+....+++.          .....++|+.+++++      ++++++|++|+
T Consensus       146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~Y~~----------~~G~~~lReaia~~~~~~~~~~~~~~~I~it~  215 (517)
T PRK13355        146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEGYSD----------SKGLFSARKAIMQYAQLKGLPNVDVDDIYTGN  215 (517)
T ss_pred             CCeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCCCCC----------CcChHHHHHHHHHHHHhcCCCCCChhHEEEeC
Confidence            366888886663    3488899999887653222211          134677888888888      67888999999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |+++++.+++.+++    ++||+|+++.+.|+.+...++..   |.+++.++++.  ++.+|++++++++++++++|+++
T Consensus       216 G~~eal~~~~~~l~----~~Gd~Vli~~P~y~~y~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~  288 (517)
T PRK13355        216 GVSELINLSMSALL----DDGDEVLIPSPDYPLWTACVNLA---GGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVII  288 (517)
T ss_pred             cHHHHHHHHHHHhC----CCCCEEEEcCCCCcCHHHHHHHC---CCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEE
Confidence            99999999999988    89999999999999998877766   99999998763  45789999999999999999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCccc---EEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWNVS---LMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~D---i~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||||.+++   +++|+++|++||++||+|++|.--.    ....+.....+   +.+.|++|.|+.+|  +||+++.
T Consensus       289 nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~i~~  368 (517)
T PRK13355        289 NPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSHMIAGYRIGWMILS  368 (517)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhccCcccceEEEEee
Confidence            99999999999   7889999999999999999987321    11111111112   33578999887666  8999965


Q ss_pred             c--CCCccccccccCCccccccccCCCChhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          272 R--RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA---KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       272 ~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      .  +....+...+..   ..... .+.+.+...++..++...   .+.+... .+..+.++++.+.|.+ ++++.+..+.
T Consensus       369 ~~~~~~~~~~~~l~~---~~~~~-~~~~~~~q~a~~~aL~~~~~~~~~~~~~-~~~~~~r~~l~~~L~~-~~g~~~~~p~  442 (517)
T PRK13355        369 GNKRIAKDYIEGLNM---LANMR-LCSNVPAQSIVQTALGGHQSVKDYLVPG-GRVYEQRELVYNALNA-IPGISAVKPK  442 (517)
T ss_pred             CchhhHHHHHHHHHH---HhcCc-CCcChHHHHHHHHHhcCCccHHHHHHHH-HHHHHHHHHHHHHHhc-CCCcccCCCC
Confidence            2  221111111100   00011 134555555555565321   2223332 3444567888889988 7888766532


Q ss_pred             CCcccceEEEEEcc-----ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          347 ERRYIGNLNLSFAY-----VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       347 ~~~~~~~~~~~~~~-----~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .   ..++.+.++.     .+..+++.. |  +||.+.+|..|..                 ...+++||++.  .+.++
T Consensus       443 g---~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~-----------------~~~~~~Ris~~--~~~~~  500 (517)
T PRK13355        443 A---AFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNW-----------------DKPDHFRVVYL--PRLED  500 (517)
T ss_pred             e---eeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCC-----------------CCcCEEEEEeC--CCHHH
Confidence            1   1222223331     123344433 3  6999999875421                 12379999995  57899


Q ss_pred             HHHHHHHHHHHHHHHH
Q 040741          419 VDRAIELTVKQVEKLR  434 (457)
Q Consensus       419 id~~~~~l~~~~~~~~  434 (457)
                      ++..+++|.++++..+
T Consensus       501 l~~a~~rl~~~~~~~~  516 (517)
T PRK13355        501 LEDAMDRLADFFSYYR  516 (517)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999987654

>PRK07337 aminotransferase; Validated

Probab=99.96  E-value=1.1e-26  Score=231.05  Aligned_cols=331  Identities=14%  Similarity=0.087  Sum_probs=229.6

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~  127 (457)
                      ..+.++|+.+.+. +.++.+.+++.+.+....   .    .  |.......++++.+++++    |  ++++++++|+|+
T Consensus        29 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~----~--Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~   99 (388)
T PRK07337         29 GRDIIHMGIGEPDFTAPEPVVEAAARALRRGV---T----Q--YTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGA   99 (388)
T ss_pred             CCCEEEeCCcCCCCCCCHHHHHHHHHHHhcCC---C----C--CCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCc
Confidence            3466899988877 467888999988775321   0    0  111123556677777765    4  477889999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++|+.+++.+++    ++||+|+++.++|+.+...+...   |.+++.++.+.  ++.+|++++++++++++++|+++++
T Consensus       100 ~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p  172 (388)
T PRK07337        100 SAALLLACLALV----ERGDEVLMPDPSYPCNRHFVAAA---EGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASP  172 (388)
T ss_pred             HHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECC
Confidence            999999999887    89999999999999987766555   99999999863  3578999999999999999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCCccc-EEEeccccccCCCC--ceEEEEecCCCc
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKWNVS-LMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~~~D-i~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      +||||.+.+   +++|+++|+++++++++|+++..-..   +......+.+ +++.|++|.+|.+|  +|+++++++.++
T Consensus       173 ~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~RiG~~~~~~~l~~  252 (388)
T PRK07337        173 SNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSLGDDVITINSFSKYFNMTGWRLGWLVVPEALVG  252 (388)
T ss_pred             CCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhccCCEEEEEechhhcCCchhheeeeecCHHHHH
Confidence            999999987   67788899999999999999863211   1111122233 45679999887666  899999877666


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                      ++.......       ....+.....++..++.. ..+.+.+..+.++++++++.+.|++ + ++.+...+..  +.++.
T Consensus       253 ~l~~~~~~~-------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~~p~~--g~f~~  321 (388)
T PRK07337        253 TFEKLAQNL-------FICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES-L-GFKVPVMPDG--AFYVY  321 (388)
T ss_pred             HHHHHHHHh-------ccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCCe--eEEEE
Confidence            554433211       113344444444444431 1123566777888888999999988 4 4443211221  34444


Q ss_pred             EEEcc------ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          356 LSFAY------VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       356 ~~~~~------~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      +.++.      .+..++... +  +||.+.+|..|..              .  ...+++|++++.  +.++++..+++|
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~--------------~--~~~~~~Ri~~~~--~~~~l~~~l~rl  383 (388)
T PRK07337        322 ADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGP--------------H--APRDYIRLSYAT--SMSRLEEAVARL  383 (388)
T ss_pred             EecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCC--------------C--CCCCEEEEEecC--CHHHHHHHHHHH
Confidence            55542      244566544 3  6999999875432              1  123799999996  588888888888


Q ss_pred             HHHH
Q 040741          427 VKQV  430 (457)
Q Consensus       427 ~~~~  430 (457)
                      .+++
T Consensus       384 ~~~l  387 (388)
T PRK07337        384 GKLF  387 (388)
T ss_pred             HHHh
Confidence            7654

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=1.2e-26  Score=228.28  Aligned_cols=318  Identities=16%  Similarity=0.131  Sum_probs=233.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhh--ccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLS--RYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~  131 (457)
                      .+.++|+.+.+. ++++++++++.+.+..  ...+|.           ....++++.+++++|.++ +++++|+|+++++
T Consensus        26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i   94 (356)
T PRK04870         26 TGMVKLDAMENPYRLPAELRAELGERLAEVALNRYPD-----------PRAAALKAALRAAMGVPAGADVLLGNGSDELI   94 (356)
T ss_pred             CCceeCcCCCCCCCCCHHHHHHHHHHhhccccccCCC-----------CCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHH
Confidence            467899888777 6889999999988753  111111           134689999999999875 4799999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G  210 (457)
                      .+++.++.    ++|+.|+++.+.|..+...++..   |++++.++.++++.+|+++++++++ .++++|++++++||||
T Consensus        95 ~~~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG  167 (356)
T PRK04870         95 QLLALACA----KPGATVLAPEPGFVMYRMSAKLA---GLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTG  167 (356)
T ss_pred             HHHHHHhc----CCCCEEEECCCCHHHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence            99999888    89999999999998877766555   9999999998778899999999996 4789999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCC-c--ccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCC
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKI-P--VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~--~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~  285 (457)
                      .+.+.+++.++++..++++|+|+++..... .  ..+...+..+++.|++| +|.+|  +|+++++++.++++......+
T Consensus       168 ~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~~~S~SK-~~~~GlRiG~~i~~~~~i~~~~~~~~~~  246 (356)
T PRK04870        168 NLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLARFPNLLVMRTVSK-LGLAGLRLGYLAGHPAWIAELDKVRPPY  246 (356)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhhCCCEEEEecchh-hhhHHHhhhhhhCCHHHHHHHHHccCCC
Confidence            999988888888777899999999852211 1  11222234578899999 77666  999999877666554433211


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                               ..+.....++..+++. .+.+++..++++++++++.+.|.+ ++++.+..+ .   .+++.+.++  +...
T Consensus       247 ---------~~~~~~q~~a~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---~~~~~~~~~--~~~~  309 (356)
T PRK04870        247 ---------NVNVLTQATALFALEH-VDVLDAQAAQLRAERTRLAAALAA-LPGVTVFPS-A---ANFILVRVP--DAAA  309 (356)
T ss_pred             ---------cCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCC-C---CeEEEEECC--CHHH
Confidence                     2333333333344432 223677788888999999999988 778765432 1   334444444  4455


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +...+  +||.+.++..+..                 ...+++||+++   +.+++++++++|+++
T Consensus       310 ~~~~l~~~gI~v~~~~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~  355 (356)
T PRK04870        310 VFDGLKTRGVLVKNLSGMHP-----------------LLANCLRVTVG---TPEENAQFLAALKAA  355 (356)
T ss_pred             HHHHHHHCCEEEEECCCCCC-----------------CCCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence            66655  6899987753311                 12379999998   589999999999865

>PRK08912 hypothetical protein; Provisional

Probab=99.96  E-value=1.1e-26  Score=231.08  Aligned_cols=331  Identities=19%  Similarity=0.180  Sum_probs=228.7

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~T  128 (457)
                      ..+.|..+.+. +.|+.+.+++.+.+....       ..|+  ......++|+.+++++    |  ++++ ++++|+|++
T Consensus        27 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~~-------~~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~   97 (387)
T PRK08912         27 GAINLGQGFPDDPGPEDVRRAAADALLDGS-------NQYP--PMMGLPELRQAVAAHYARFQGLDLDPETEVMVTSGAT   97 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCC--CCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEeCCcH
Confidence            44666655544 456778888777654211       0111  1112345555555544    4  4676 899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      +|+.+++.++.    ++|++|+++.+.|+.+...++..   |.+++.++.+. ++.+|+++++++++++++++++++++|
T Consensus        98 ~al~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~N  170 (387)
T PRK08912         98 EALAAALLALV----EPGDEVVLFQPLYDAYLPLIRRA---GGVPRLVRLEPPHWRLPRAALAAAFSPRTKAVLLNNPLN  170 (387)
T ss_pred             HHHHHHHHHhc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccCcCCHHHHHHHhCccceEEEEeCCCC
Confidence            99999999887    89999999999999888776655   99999999863 567899999999998999999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC------cc-cCCC-CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI------PV-DVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~------~~-~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      |||.+.+   +++|.++|++|++++|+|++|+....      ++ .... .+.++++.|++|.||.+|  +|+++++++.
T Consensus       171 PtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~  250 (387)
T PRK08912        171 PAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPL  250 (387)
T ss_pred             CcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHH
Confidence            9999998   66789999999999999999863211      11 1111 245789999999988777  9999998776


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++++.......       ..+.+.....++..++....+.+++..++++++++++.+.|++ . ++.+..+ ..  ..++
T Consensus       251 ~~~l~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~g--~~~l  318 (387)
T PRK08912        251 LRVLAKAHQFL-------TFTTPPNLQAAVAYGLGKPDDYFEGMRADLARSRDRLAAGLRR-I-GFPVLPS-QG--TYFL  318 (387)
T ss_pred             HHHHHHHHhhc-------cccCChHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCC-Cc--ceEE
Confidence            65554332111       1123333333343444322334677788889999999999998 5 6665543 21  2233


Q ss_pred             EEEEcc----ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          355 NLSFAY----VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       355 ~~~~~~----~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .+.++.    .+..++...+   +||.+.+|..+...               ....+++||+++.  ++++++..+++|+
T Consensus       319 ~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~---------------~~~~~~iRl~~~~--~~~~l~~~l~rl~  381 (387)
T PRK08912        319 TVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEE---------------DPVTSVVRFCFAK--RDATLDEAVERLA  381 (387)
T ss_pred             EecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCC---------------CCCCCEEEEEEeC--CHHHHHHHHHHHH
Confidence            444432    3455666654   59999988654321               1123799999996  5799999999998


Q ss_pred             HHHHH
Q 040741          428 KQVEK  432 (457)
Q Consensus       428 ~~~~~  432 (457)
                      +++++
T Consensus       382 ~~l~~  386 (387)
T PRK08912        382 AARRR  386 (387)
T ss_pred             HHHhc
Confidence            87753

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.96  E-value=1.3e-26  Score=229.25  Aligned_cols=334  Identities=16%  Similarity=0.157  Sum_probs=231.1

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+||+.   ++...+.+.+++..+..+..++      .|++...+.+.++++.+++++|.+.  +++++||++|+.+++.
T Consensus        26 ~pi~~~---~~~~~~~~~~~~~~~~~~~~~~------~y~r~~~p~~~~le~~la~l~g~~~--~v~~ssG~~Ai~~al~   94 (390)
T PRK08133         26 EALFLT---SSFVFESAAEAAARFAGEEPGN------IYSRFTNPTVTMFQERLAALEGAEA--CVATASGMAAILAVVM   94 (390)
T ss_pred             CCccCC---CCcccCCHHHHHHhhcCCcCCc------eeECCCChHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHH
Confidence            457765   3444555666666554332222      2333345678899999999999864  8999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      ++.    ++||+||++...|.+....+. .+...|+++++++.+     |+++++++++++|++|++++++||+|.+.|+
T Consensus        95 al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~v~~vd~~-----d~~~l~~~i~~~tklV~ie~p~NptG~v~dl  165 (390)
T PRK08133         95 ALL----QAGDHVVSSRSLFGSTVSLFEKIFARFGIETTFVDLT-----DLDAWRAAVRPNTKLFFLETPSNPLTELADI  165 (390)
T ss_pred             HHh----CCCCEEEEccCcchhHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCCcCCH
Confidence            887    899999999999988876554 345669999999875     8999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC--c-eEEEEecCCCccccccccCCccccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG--V-GALYMRRRPRIRVEPLINGGGQERGIR  292 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G--~-G~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      ++|.++|+++|+++++|++++.+..... ...++|+++.|++|++++.|  + |+++.+++.++++.......+      
T Consensus       166 ~~I~~la~~~gi~livD~t~~~~~~~~p-l~~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~~g------  238 (390)
T PRK08133        166 AALAEIAHAAGALLVVDNCFCTPALQQP-LKLGADVVIHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRTAG------  238 (390)
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCcEEEeecceeecCCcceEeEEEEcCHHHHHHHHHHHHHhC------
Confidence            9999999999999999999876543222 24478999999999877654  3 677766654444332221111      


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEE
Q 040741          293 SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSF  358 (457)
Q Consensus       293 ~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~  358 (457)
                       ...+......   ++.. .+.+..+.++..+++.++.+.|++ .|++..+-.+.              ..+++++.|.+
T Consensus       239 -~~~~~~~a~~---~l~g-l~tl~~R~~~~~~~a~~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l  312 (390)
T PRK08133        239 -PTLSPFNAWV---FLKG-LETLSLRMEAHSANALALAEWLEA-HPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEV  312 (390)
T ss_pred             -CCCCHHHHHH---HHcc-cchHHHHHHHHHHHHHHHHHHHHh-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence             1222222221   2211 124677777888899999999998 77764332211              23577888887


Q ss_pred             ccc--cchHHHhccc--CeEecccCccC----CCCCC----hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          359 AYV--EGESLLMGLK--EVAVSSGSACT----SASLE----PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       359 ~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~~----~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      .+-  ....++..|+  .++++-|..-+    +....    +.-..+..|+.+    +.|||+++.    ||+|.+++.|
T Consensus       313 ~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl  384 (390)
T PRK08133        313 KGGREAAWRVIDATRLISITANLGDTKTTITHPATTTHGRLSPEARAAAGITE----GLIRVAVGL----EDVADIKADL  384 (390)
T ss_pred             cCCHHHHHHHHHhCCcceEeccCCCcceeeecCCCCCcccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHH
Confidence            531  1235555553  44555554322    22221    111244567665    899999997    7888899999


Q ss_pred             HHHHH
Q 040741          427 VKQVE  431 (457)
Q Consensus       427 ~~~~~  431 (457)
                      +++++
T Consensus       385 ~~al~  389 (390)
T PRK08133        385 ARGLA  389 (390)
T ss_pred             HHHhh
Confidence            88875

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=2e-26  Score=226.03  Aligned_cols=317  Identities=15%  Similarity=0.146  Sum_probs=227.5

Q ss_pred             cEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           58 PLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        58 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+.|+.+.+. ++|+.+.+++.+.+...  .    ...|+   .....++|+.++++++++++++++|+|+++++.+++.
T Consensus        24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~--~----~~~y~---~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~   94 (351)
T PRK14807         24 KYKMDANETPFELPEEVIKNIQEIVKSS--Q----VNIYP---DPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIML   94 (351)
T ss_pred             eeEccCCCCCCCCCHHHHHHHHHHhhcC--c----ccCCC---CccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHH
Confidence            3667777776 67899999998877421  1    11111   1234789999999999999999999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l  215 (457)
                      ++.    ++||+|+++.+.|..+...++..   |++++.++.+.++.+|++++++++++ ++++|++++++||||.+.+.
T Consensus        95 ~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~~  167 (351)
T PRK14807         95 AFI----NKGDVVIYPHPSFAMYSVYSKIA---GAVEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIER  167 (351)
T ss_pred             Hhc----CCCCEEEEeCCChHHHHHHHHHc---CCeEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCCH
Confidence            887    89999999999888766555554   99999999887778999999999975 89999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcC--CCccc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALG--KIPVD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g--~~~~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      +++.++|++++.++++|++|.--  ..... ....+..+++.|++|.+|.+|  +|+++.+++.++++......      
T Consensus       168 ~~l~~l~~~~~~~~ivDe~y~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~~~~~~~~~~~~------  241 (351)
T PRK14807        168 EDIIKIIEKSRGIVVVDEAYFEFYGNTIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANENILKYLNLVKSP------  241 (351)
T ss_pred             HHHHHHHHhCCCEEEEeCcchhhcccchHHHhhhCCCEEEEecchHhcccchhceeeeecCHHHHHHHHHccCC------
Confidence            99999999988899999998521  11111 112234588899999888655  99999887666555432211      


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL  370 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  370 (457)
                         ...+.....++..+++.  ..+++..+.++++++++.+.|.+ ++++.+.. +.   .+++.+.++  +...+...+
T Consensus       242 ---~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~r~~l~~~l~~-~~g~~~~~-~~---~~~~~i~~~--~~~~~~~~l  309 (351)
T PRK14807        242 ---YNINSLSQVIALKVLRT--GVLKERVNYILNERERLIKELSK-IPGIKVYP-SK---TNFILVKFK--DADYVYQGL  309 (351)
T ss_pred             ---CCcCHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHh-CCCcEECc-CC---ccEEEEEcC--CHHHHHHHH
Confidence               12333444444444432  24566667778888889899987 77876643 22   334444443  345555555


Q ss_pred             --cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          371 --KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       371 --~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                        +||.+..+...                  ....+++||+++   +.++.+++++.|+++
T Consensus       310 ~~~gV~v~~~~~~------------------~~~~~~iRis~~---~~~~~~~l~~~l~~~  349 (351)
T PRK14807        310 LERGILVRDFSKV------------------EGLEGALRITVS---SCEANDYLINGLKEL  349 (351)
T ss_pred             HHCCEEEEECCCC------------------CCCCCeEEEEcC---CHHHHHHHHHHHHHh
Confidence              58888653210                  011278999998   478889999888764

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=3.1e-26  Score=229.06  Aligned_cols=331  Identities=15%  Similarity=0.122  Sum_probs=228.6

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ++++.++.    ..+|++.+++.+.+.....++.+ ... .....+.+.++++.+++++|.+  .+++.++|++|+..++
T Consensus        47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~-s~~-~~~~~~~~~~le~~la~~~g~~--~~~~~~SG~~An~~ai  122 (406)
T PRK13393         47 VTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGG-TRN-ISGTNHYHVLLEAELADLHGKE--AALLFTSGYVSNWAAL  122 (406)
T ss_pred             EEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcc-ccc-ccCChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHHHHHH
Confidence            45555554    25799999999998764322221 111 1122357889999999999974  3677777788999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEecccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGV  211 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~  211 (457)
                      ..+...  .+++.|+++..+|.++..+++..   |.++..++.+     |++++++.+.    +++++|++++++|++|.
T Consensus       123 ~~l~~~--~~g~~I~~~~~~H~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~  192 (406)
T PRK13393        123 STLGSR--LPGCVILSDELNHASMIEGIRHS---RAEKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSMDGD  192 (406)
T ss_pred             HHhhcC--CCCCEEEEccchhHHHHHHHHHc---CCeEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCCCCc
Confidence            977631  26788899999999999887654   7788777654     7777777664    36789999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCC-ccc-----CC--CCcccEEEeccccccCCCCceEEEEecCCCcccccccc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKI-PVD-----VE--KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~-----~~--~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      +.|+++|.++|+++|+++++|++|+.|.. +..     ..  ...+|+++.|++|.+|..| |+++.+++..+.+.....
T Consensus       193 ~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G-G~~~~~~~~~~~l~~~~~  271 (406)
T PRK13393        193 IAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG-GYITGSAALCDFIRSFAS  271 (406)
T ss_pred             hhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC-ceeeCCHHHHHHHHHhCc
Confidence            99999999999999999999999986542 111     00  1136888899999988776 888877665444433221


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-cc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VE  362 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  362 (457)
                      ++     ...++.++..++++.++++.+.+. ....++.+++.+++++.|.+ + ++.+...    ..+++.+.+.. ..
T Consensus       272 ~~-----~~t~~~~p~~~aa~~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~----~~~i~~v~~~~~~~  339 (406)
T PRK13393        272 GF-----IFTTSLPPAVAAGALASVRHLKAS-SAERERHQDRVARLRARLDK-A-GIPHLPN----PSHIVPVMVGDPVL  339 (406)
T ss_pred             Cc-----eecCccCHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCC----CCCeEEEEeCCHHH
Confidence            11     123456666677777888876554 23346678889999999987 4 5544322    13344343322 12


Q ss_pred             chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       363 ~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ...+...|   +||.+.++...+.                ..+.+.|||+++.++|++|+|+++++|+++++++
T Consensus       340 ~~~l~~~L~~~~Gi~v~~~~~p~~----------------p~g~~~iRis~~~~~t~edid~l~~~l~~~~~~~  397 (406)
T PRK13393        340 CKQISDELLDRYGIYVQPINYPTV----------------PRGTERLRITPSPLHTDADIEHLVQALSEIWARL  397 (406)
T ss_pred             HHHHHHHHHHhCCEEEEeECCCCC----------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence            34555554   3888876432111                1123689999999999999999999999988764

>PLN02656 tyrosine transaminase

Probab=99.96  E-value=2e-26  Score=230.45  Aligned_cols=333  Identities=16%  Similarity=0.165  Sum_probs=231.3

Q ss_pred             CCCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEE
Q 040741           55 AGRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~  123 (457)
                      ..+.+.|..+.+.     ++++.+.+++.+.+.....      .  +|.......++++.++++++      ++++++++
T Consensus        30 ~~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~--~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~  101 (409)
T PLN02656         30 GKRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------N--GYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFI  101 (409)
T ss_pred             CCeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------C--CCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEE
Confidence            3566777777665     6679999999887764210      0  11111345567777777763      46788999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEE
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~  201 (457)
                      |+|+++|+.+++.+++    ++||+|+++++.|+.+...+...   |++++.++.+  .++.+|++++++++++++++++
T Consensus       102 t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~  174 (409)
T PLN02656        102 TSGCTQAIDVALSMLA----RPGANILLPRPGFPIYELCAAFR---HLEVRYVDLLPEKGWEVDLDAVEALADQNTVALV  174 (409)
T ss_pred             eCChHHHHHHHHHHHh----CCCCeEEEeCCCCCcHHHHHHHc---CCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEE
Confidence            9999999999999987    89999999999998887666555   9999999985  2457899999999999999999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c-cc---CCCCcccEEEeccccccCCCC--ceEEE
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P-VD---VEKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~-~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++++||||.+.+   +++|+++|+++|++||+|++++--..   . ..   +.....-+++.|++|.|+.+|  +|+++
T Consensus       175 l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRiG~~i  254 (409)
T PLN02656        175 IINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGWRLGWFV  254 (409)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhccCcceeEEEEE
Confidence            9999999999976   77889999999999999999973211   1 11   112223477889999877666  99999


Q ss_pred             Eec--------CCCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          270 MRR--------RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       270 ~~~--------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                      +.+        +.++++.....       . .+.++.....++..+++. ....+++.+++++++++.+.+.|++ ++++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~  325 (409)
T PLN02656        255 TTDPSGSFRDPKIVERIKKYFD-------I-LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKE-IPCI  325 (409)
T ss_pred             EeCcccccccHHHHHHHHHHHh-------h-hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhh-CCCC
Confidence            852        23333322211       0 123444455555555542 1234777888888999999999988 6654


Q ss_pred             EEeCCCCCcccceEEEEEcc-----c-cchHHHh-cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          341 VVNGSMERRYIGNLNLSFAY-----V-EGESLLM-GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~-~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                      .....+..  +.++.+.++.     . +..++.. .+  +||.+.+|..|.              .     .+++||+++
T Consensus       326 ~~~~~p~g--g~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg--------------~-----~~~iRi~~~  384 (409)
T PLN02656        326 TCPHKPEG--SMAVMVKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVG--------------L-----KNWLRITFA  384 (409)
T ss_pred             cCCcCCCe--EEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcC--------------C-----CCeEEEEeC
Confidence            32222222  2333344431     1 2334333 33  699999986542              1     279999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
Q 040741          412 RFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       412 ~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .  +++++++.+++|++++++..
T Consensus       385 ~--~~e~l~eal~rl~~~~~~~~  405 (409)
T PLN02656        385 A--DPSSLEEALGRIKSFYLRHS  405 (409)
T ss_pred             C--CHHHHHHHHHHHHHHHHHhc
Confidence            5  68999999999999887554

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=2.8e-26  Score=226.15  Aligned_cols=323  Identities=18%  Similarity=0.207  Sum_probs=224.9

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      |+|+.++.    +.++++++++.+++.. ++...+ .+...+...+...++++.++++++.+ +++++++ |++++..++
T Consensus        18 ~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~~i~~~~-G~~~~~~~l   93 (360)
T TIGR00858        18 LLNFSSNDYLGLASHPEVIQAAQQGAEQ-YGAGST-ASRLVSGNSPLHEELEEELAEWKGTE-AALLFSS-GYLANVGVI   93 (360)
T ss_pred             EEecccCCcccCCCCHHHHHHHHHHHHh-cCCCCC-CcCcccCCcHHHHHHHHHHHHHhCCC-CEEEECc-hHHHHHHHH
Confidence            44544443    3558999999998865 222211 11111222356788999999999963 4455555 567776777


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEecccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNEIGV  211 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~  211 (457)
                      .++.    ++|++|++..++|+++...++..   |.+++.++.     +|++++++.+++    ++++|++++++|++|.
T Consensus        94 ~~~~----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~  161 (360)
T TIGR00858        94 SALV----GKGDLILSDALNHASLIDGCRLS---GARVRRYRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMDGD  161 (360)
T ss_pred             HHhC----CCCCEEEEEccccHHHHHHHHhc---CCceEEecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCCCC
Confidence            7776    89999999999999998876655   888887763     488999998864    5789999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCccc---------CCCCcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVD---------VEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~---------~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      ..|+++|.++|+++|+++++|++|+.+..+.+         +...+.|+++.|++|.+|+.| |+++++++..+++....
T Consensus       162 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~~g-G~~~~~~~~~~~~~~~~  240 (360)
T TIGR00858       162 IAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGSYG-AYVAGSQALIDYLINRA  240 (360)
T ss_pred             CcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhccC-cEEEcCHHHHHHHHHhC
Confidence            99999999999999999999999986643221         222357899999999989887 89988776554443221


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-c
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-V  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  361 (457)
                      ..+     ...+..+...++++.++++.... .++..++++++.+++.+.|.+ + ++.+..+    ..+++.+.++. .
T Consensus       241 ~~~-----~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~~~~~~~~  308 (360)
T TIGR00858       241 RTL-----IFSTALPPAVAAAALAALELIQE-EPWRREKLLALIARLRAGLEA-L-GFTLMPS----CTPIVPVIIGDNA  308 (360)
T ss_pred             ccc-----eecCCCCHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHH-c-CCccCCC----CCCEEEEEeCCHH
Confidence            110     01123444555666677765543 467788999999999999998 5 4555432    13344455542 2


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      +..++...|  +||.+.++..+..                ....++|||+++.+++++|+++++++|+
T Consensus       309 ~~~~~~~~l~~~gI~v~~~~~~~~----------------~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       309 SALALAEELQQQGIFVGAIRPPTV----------------PAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             HHHHHHHHHHHCCeeEeeeCCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            345566655  6888876532211                1123689999999999999999999874

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=2.6e-26  Score=230.04  Aligned_cols=323  Identities=16%  Similarity=0.160  Sum_probs=222.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      .+|++++++.+.+... +...+++..+ +...+.+.++++.+++++|.+ + .++.++|++|+..++..+...  .+++.
T Consensus        61 ~~p~v~~a~~~~~~~~-~~~~~~s~~~-~~~~~~~~~Le~~la~~~g~~-~-~i~~~sG~~a~~~~i~~l~~~--~~g~~  134 (410)
T PRK13392         61 QHPDVIGAMVDALDRY-GAGAGGTRNI-SGTSHPHVLLERELADLHGKE-S-ALLFTSGYVSNDAALSTLGKL--LPGCV  134 (410)
T ss_pred             CCHHHHHHHHHHHHHc-CCCCchhhhc-ccChHHHHHHHHHHHHHhCCC-C-EEEECcHHHHHHHHHHHHhcC--CCCCE
Confidence            5799999999988654 2211112111 122245789999999999964 3 555556788988888876521  37889


Q ss_pred             EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc----CCCceEEEEeccccccccccChHHHHHHHHh
Q 040741          149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI----RPDTGLISVMAVNNEIGVIQPMEEIGQICKE  224 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i----~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~  224 (457)
                      |+++..+|.+...+++..   |.++..++.+     |++++++.+    .+++++|++++++||+|.+.|+++|.++|++
T Consensus       135 vi~~~~~h~s~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~l~~i~~l~~~  206 (410)
T PRK13392        135 ILSDALNHASMIEGIRRS---GAEKQVFRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMDGDIAPIEAICDLADR  206 (410)
T ss_pred             EEEehhhhHHHHHHHHHc---CCeEEEEeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCCcccccHHHHHHHHHH
Confidence            999888999988766554   8888777643     455555544    3578999999999999999999999999999


Q ss_pred             cCCcEEEehhhhcCCCccc---C----C-CCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCC
Q 040741          225 FKIPFHTDAAQALGKIPVD---V----E-KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL  296 (457)
Q Consensus       225 ~~v~li~D~a~~~g~~~~~---~----~-~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~  296 (457)
                      ||+++++|++|+.|.....   +    . ...+|+++.|++|.+|..| |+++++++.++.+.....++     ......
T Consensus       207 ~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G-G~~~~~~~~~~~l~~~~~~~-----~~s~~~  280 (410)
T PRK13392        207 YNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG-GYIAASADLIDFVRSFAPGF-----IFTTAL  280 (410)
T ss_pred             cCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc-chhhcCHHHHHHHHHhCcch-----hccCcC
Confidence            9999999999996543111   0    0 1146899999999888776 88888776555444322211     112234


Q ss_pred             ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc---cC
Q 040741          297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL---KE  372 (457)
Q Consensus       297 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l---~~  372 (457)
                      ++..++++.++++.... .....++++++++++.+.|++ + ++.+..+.    .+++.+.+... ...++...|   +|
T Consensus       281 ~~~~~~a~~aaL~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~i~~~~~~~~~~~~~~L~~~~G  353 (410)
T PRK13392        281 PPAVAAGATAAIRHLKT-SQTERDAHQDRVAALKAKLNA-N-GIPVMPSP----SHIVPVMVGDPTLCKAISDRLMSEHG  353 (410)
T ss_pred             CHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            55667777778876543 345567788899999999988 4 66554321    23333444321 234566554   48


Q ss_pred             eEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          373 VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       373 i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      |.+.+......                ..+..+|||+++..+|++|+|+++++|+++.+++.
T Consensus       354 I~v~~~~~p~~----------------~~~~~~lRis~~~~~t~edid~l~~aL~~~~~~~~  399 (410)
T PRK13392        354 IYIQPINYPTV----------------PRGTERLRITPTPLHDDEDIDALVAALVAIWDRLE  399 (410)
T ss_pred             EEEeeeCCCCC----------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHcC
Confidence            88876432110                11236899999999999999999999999877653

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.96  E-value=3.5e-26  Score=228.96  Aligned_cols=331  Identities=15%  Similarity=0.149  Sum_probs=228.9

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ++++.++.    ..+|++.+++.+.+......+ +++ ...+...+.+.++++.+++++|.+ + .++.++|++|+..++
T Consensus        48 ~~~~~s~dylgl~~~p~v~~a~~~~~~~~~~~~-~~s-~~~~g~~~~~~~l~~~la~~~g~~-~-~~~~~sG~~an~~ai  123 (407)
T PRK09064         48 VTVWCSNDYLGMGQHPKVIEAMIEALDRCGAGA-GGT-RNISGTNHYHVELERELADLHGKE-A-ALVFTSGYVSNDATL  123 (407)
T ss_pred             EEEEECCCCcCCCCCHHHHHHHHHHHHHcCCCC-CCc-CcCccCHHHHHHHHHHHHHHhCCC-c-EEEECcHHHHHHHHH
Confidence            44555554    457899999999887642221 111 111223468899999999999963 3 566666888999888


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEecccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGV  211 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~  211 (457)
                      ..+...  .+++.|+.+...|.+....++..   |.++..++.+     |++++++.++    +++++|++++++|++|.
T Consensus       124 ~~l~~~--~~~~~i~~~~~~h~s~~~~~~~~---~~~~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~  193 (407)
T PRK09064        124 STLAKL--IPDCVIFSDELNHASMIEGIRRS---RCEKHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSMDGD  193 (407)
T ss_pred             HHHhCC--CCCCEEEEeCcchHHHHHHHHHc---CCcEEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCCCcc
Confidence            877632  36788888888898888777655   7777666543     7888888775    56889999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCC-cc-----cCCC--CcccEEEeccccccCCCCceEEEEecCCCcccccccc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKI-PV-----DVEK--WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~-----~~~~--~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      +.|+++|.++|++||+++++|++|+.|.. +.     ....  ..+|+++.|++|.+|..| |+++++++.++.+.....
T Consensus       194 ~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G-G~~~~~~~~~~~l~~~~~  272 (407)
T PRK09064        194 IAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVMG-GYIAGSAALVDAVRSYAP  272 (407)
T ss_pred             ccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhccC-ceEecCHHHHHHHHHhCc
Confidence            99999999999999999999999985532 10     1011  146899999999999887 898887765554433222


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-cc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VE  362 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  362 (457)
                      ++     ......++..++++.++++.+... ....++.+++++++.+.|.+ + ++.+.++.    .+++.+.+.. ..
T Consensus       273 ~~-----~~t~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~iv~i~~~~~~~  340 (407)
T PRK09064        273 GF-----IFTTSLPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDA-A-GIPVMPNE----SHIVPVMVGDPEK  340 (407)
T ss_pred             cc-----cccCcCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEeCCHHH
Confidence            11     112244555666666778776543 44567888999999999988 4 66554421    3344444432 12


Q ss_pred             chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       363 ~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ..++...|   +||.+.+......                +.+..++||+++..+|++|+++++++|+++++++
T Consensus       341 ~~~l~~~L~~~~gi~v~~~~~p~~----------------~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~~~  398 (407)
T PRK09064        341 CKKASDMLLEEHGIYVQPINYPTV----------------PRGTERLRITPTPFHTDEMIDHLVEALVEVWARL  398 (407)
T ss_pred             HHHHHHHHHHhCCEEEeeECCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence            34565554   3888865321110                1123689999999999999999999999988754

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.96  E-value=3.2e-26  Score=228.76  Aligned_cols=335  Identities=17%  Similarity=0.167  Sum_probs=233.0

Q ss_pred             CCCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCcEEE
Q 040741           55 AGRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~~  123 (457)
                      +.+.+.|..+.+.     ++++++.+++.+.+.....+        +|.......++++.++++++.      +++++++
T Consensus        30 ~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~--------~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~  101 (403)
T TIGR01265        30 EKPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN--------GYAPSVGALAAREAVAEYLSSDLPGKLTADDVVL  101 (403)
T ss_pred             CCCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC--------CCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEE
Confidence            3566788777653     67799999999887542111        111123466788999999874      5678999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEE
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~  201 (457)
                      |+|+|+|+.+++.++.    ++|++|+++.++|..+...++..   |.+++.++.+  .++.+|++++++++++++++++
T Consensus       102 t~G~t~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  174 (403)
T TIGR01265       102 TSGCSQAIEICIEALA----NPGANILVPRPGFPLYDTRAAFS---GLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIV  174 (403)
T ss_pred             ecChHHHHHHHHHHhC----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEecCCcccCCccCHHHHHHHhCcCccEEE
Confidence            9999999999999998    89999999999998776665544   9999998875  3457999999999999999999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c-cc---CCCCcccEEEeccccccCCCC--ceEEE
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P-VD---VEKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~-~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++++||+|.+.+   +++|.++|+++|+++|+|++++--..   + ..   +.....-+++.|++|.|+.+|  +|+++
T Consensus       175 i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v  254 (403)
T TIGR01265       175 VINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGWRLGWII  254 (403)
T ss_pred             EecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeecccccCCCcceEEEEE
Confidence            9999999999987   78899999999999999999873211   1 11   111112467889999877656  99999


Q ss_pred             Eec--CCCcc-ccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          270 MRR--RPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       270 ~~~--~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      +.+  +.... +.........   . ...++.....++..+++. ....+++..++++++++.+.+.|+. ++++.+..+
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p  329 (403)
T TIGR01265       255 IHDPHGIFRDTVLQGLKNLLQ---R-ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKD-IPGLVCPKP  329 (403)
T ss_pred             EeCchhhhHHHHHHHHHHHhh---h-hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCC
Confidence            853  22111 1111100000   0 112344444555555543 2234777888888899999999988 677664432


Q ss_pred             CCCcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCH
Q 040741          346 MERRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE  416 (457)
Q Consensus       346 ~~~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~  416 (457)
                       ..  ..++.+.++.      .+..++...+   +||.+.+|..+..                   .++|||+++.  ++
T Consensus       330 -~~--g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-------------------~~~iRis~~~--~~  385 (403)
T TIGR01265       330 -EG--AMYLMVKLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL-------------------PNWVRITITV--PE  385 (403)
T ss_pred             -Cc--eeEEEEeccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC-------------------CCeEEEEecC--CH
Confidence             21  3344444432      1345565553   5999998875421                   2799999985  57


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 040741          417 AEVDRAIELTVKQVEKL  433 (457)
Q Consensus       417 edid~~~~~l~~~~~~~  433 (457)
                      +.++..+++|.++++++
T Consensus       386 ~~l~~~l~~l~~~~~~~  402 (403)
T TIGR01265       386 SMLEEACSRIKEFCERH  402 (403)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            88999999998888653

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.96  E-value=4.7e-26  Score=228.10  Aligned_cols=333  Identities=16%  Similarity=0.161  Sum_probs=230.5

Q ss_pred             cCCCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------------C
Q 040741           54 IAGRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------------A  116 (457)
Q Consensus        54 ~~~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------------~  116 (457)
                      ...+.+.|..+.+.     .+++.+.+++.+.+...  .    ..  +|.......++++.++++++            +
T Consensus        31 ~~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~--~----~~--~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~  102 (412)
T PTZ00433         31 SPKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQ--E----CN--GYPPTVGSPEAREAVATYWRNSFVHKESLKSTI  102 (412)
T ss_pred             CCCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcC--C----CC--CCCCCCCcHHHHHHHHHHHHhhccccccccCCC
Confidence            34555777766664     36788899988876531  0    00  11111235567777777765            5


Q ss_pred             CCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcC
Q 040741          117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIR  194 (457)
Q Consensus       117 ~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~  194 (457)
                      +++++++|+|+++++.+++.++.    ++|++|+++.++|..+...++..   |++++.++.+.  ++.+|+++++++++
T Consensus       103 ~~~~i~it~G~~~al~~~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~  175 (412)
T PTZ00433        103 KKDNVVLCSGVSHAILMALTALC----DEGDNILVPAPGFPHYETVCKAY---GIEMRFYNCRPEKDWEADLDEIRRLVD  175 (412)
T ss_pred             ChhhEEEeCChHHHHHHHHHHhc----CCCCEEEEccCCcccHHHHHHHc---CCEEEEEecCccccCcCCHHHHHHHhc
Confidence            67889999999999999999988    89999999999999988776665   99999999863  45789999999999


Q ss_pred             CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c-c---cCCCCcccEEEeccccccCCCC
Q 040741          195 PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P-V---DVEKWNVSLMSLSGHKIYGPKG  264 (457)
Q Consensus       195 ~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~-~---~~~~~~~Di~~~s~~K~~g~~G  264 (457)
                      +++++|++++++||||.+.+   +++|.++|+++|++|++|+++.--..   . .   .+.....-+++.|++|.+|.+|
T Consensus       176 ~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pG  255 (412)
T PTZ00433        176 DRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPG  255 (412)
T ss_pred             cCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCC
Confidence            89999999999999999887   67788999999999999999863211   1 1   1111112377889999887665


Q ss_pred             --ceEEEEe-c-----CCCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          265 --VGALYMR-R-----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       265 --~G~l~~~-~-----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                        +||+++. +     +.++.+.....       . ....+.....++..++.. ....+++..++++++++.+.+.|++
T Consensus       256 lRlG~~i~~~p~~~~~~~~~~~~~~~~-------~-~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~  327 (412)
T PTZ00433        256 WRLGWLLLVDPHGNGGDFLDGMKRLGM-------L-VCGPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGE  327 (412)
T ss_pred             eeEEEEEEeCCcccHHHHHHHHHHHhh-------c-cCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              9999973 2     12222221110       0 113344444444444432 2234777888888999999999987


Q ss_pred             cCCCeEEeCCCCCcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          336 KLDGVVVNGSMERRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                       +.++.+..+ ..  +.++.+.++.      .+..++...+   +||.+.+|..|..                   .+++
T Consensus       328 -~~~~~~~~p-~g--g~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-------------------~~~i  384 (412)
T PTZ00433        328 -CIGLSPTMP-RG--SMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM-------------------PGFT  384 (412)
T ss_pred             -CCCCcccCC-Ce--eEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC-------------------CCeE
Confidence             556554432 11  3334444432      1345565554   4899998875421                   2799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ||+++.  .++++++.+++|.++++..+
T Consensus       385 Ris~~~--~~e~l~~al~~l~~~~~~~~  410 (412)
T PTZ00433        385 RLTISR--PVEVLREAVERIKAFCERHK  410 (412)
T ss_pred             EEEecC--CHHHHHHHHHHHHHHHHHhc
Confidence            999985  48899999999999988654

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.96  E-value=1.1e-26  Score=232.49  Aligned_cols=338  Identities=18%  Similarity=0.237  Sum_probs=234.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      ++++++++++|.+++.+++...+  ++|+++ +..+....+.+++ .++.+++++|++..+++++ |||+|+.+++.++.
T Consensus        25 ~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~~v~~~-sgt~a~~~~l~~l~  102 (402)
T cd00378          25 IASENFTSPAVMEAMGSDLTNKYAEGYPGKR-YYGGCEYVDEIEDLAIERAKKLFGAEYANVQPH-SGSQANLAVYFALL  102 (402)
T ss_pred             eccCCcCCHHHHHHhcccccccccCCCCCCc-ccCCchHHHHHHHHHHHHHHHHhCCCceeeecC-CcHHHHHHHHHHhc
Confidence            56777899999999998875555  566553 2334444444555 6678889999976545544 57899999999997


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHH--HHhcCcEEEEEeCCC---CCCCCHHHHHHhcC-CCceEEEEecccccccccc
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRH--LQQEGFEITYLPVGA---DGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~--~~~~G~~v~~v~~~~---~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~  213 (457)
                          ++||+|+++.++|+++......  ++..|.++..++.+.   ++.+|+++++++++ +++++++++++++  |...
T Consensus       103 ----~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~~~v~~~~~~~--~~~~  176 (402)
T cd00378         103 ----EPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKPKLIVAGASAY--PRPI  176 (402)
T ss_pred             ----CCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCCCEEEecCccc--CCCc
Confidence                8999999999999877544221  334487777776642   58899999999985 6788888877754  5778


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccccc-CCCCceEEEEec-CCCccccccccCCc
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRR-RPRIRVEPLINGGG  286 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~-~~~~~~~~~~~~~~  286 (457)
                      ++++|.++|+++|+++++|++|..|..     +..+.  ++|++++|+||++ |++| |+++.++ +..+++......+ 
T Consensus       177 ~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~--~~dv~~~s~sK~l~G~~g-g~i~~~~~~~~~~l~~~~~~~-  252 (402)
T cd00378         177 DFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLP--GADVVTTTTHKTLRGPRG-GLILTRKGELAKKINSAVFPG-  252 (402)
T ss_pred             CHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCccc--CCcEEEeccccCCCCCCc-eEEEeccHHHHHHHHHHhCcc-
Confidence            999999999999999999999866532     22232  5799999999955 6775 7777766 5555543322111 


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccc
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEG  363 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  363 (457)
                           ..+++....+.++..++..... ++++..++++++++++.+.|.+ + ++.+...+..  ...+.+.++  ..+.
T Consensus       253 -----~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~--~~~v~v~~~~~~~~~  323 (402)
T cd00378         253 -----LQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKE-R-GFKVVSGGTD--NHLVLVDLRPKGITG  323 (402)
T ss_pred             -----ccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEeecCCC--CeEEEEeCCccCCCH
Confidence                 1234555666666666765554 5678888999999999999998 5 7776533322  344445554  2233


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC----CHHHHHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT----TEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~----t~edid~~~~~l~~~~~~~~  434 (457)
                      ..+...|  +||.+..+......             ........+||+++..+    +.+|++++++.|++++++-.
T Consensus       324 ~~~~~~l~~~gI~v~~~~~p~~~-------------~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~  387 (402)
T cd00378         324 KAAEDALEEAGITVNKNTLPWDP-------------SSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE  387 (402)
T ss_pred             HHHHHHHHHcCcEEcCCcCCCCC-------------CCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence            4444444  58888764321110             00123478999987744    68999999999999886544

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.96  E-value=4.1e-26  Score=227.06  Aligned_cols=328  Identities=18%  Similarity=0.191  Sum_probs=227.6

Q ss_pred             CcEEecCCCC---C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQAT---T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      +.-|+|+.++   + ..+|++.+++.+.+... +.+.. .+.......+...++++.++++++. + +.+++++|++++.
T Consensus        38 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~-~-~~i~~~~g~~~~~  113 (385)
T PRK05958         38 GRRMLNFASNDYLGLARHPRLIAAAQQAARRY-GAGSG-GSRLVTGNSPAHEALEEELAEWFGA-E-RALLFSSGYAANL  113 (385)
T ss_pred             CceEEEeeCCCcccCCCCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCC-C-cEEEECcHHHHHH
Confidence            3445565544   2 35789999999998652 22111 1111112235788899999999995 3 3566667888888


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEEEecccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---DTGLISVMAVNNEI  209 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~i~~~~~~~  209 (457)
                      .+++.+.    ++|++|+++.++|+++..++...   |.+++.++..     |++++++++++   .+.++++++++|++
T Consensus       114 ~~l~~~~----~~gd~V~~~~~~~~~~~~~~~~~---g~~~~~~~~~-----d~~~l~~~i~~~~~~~~lvi~~~~~~~~  181 (385)
T PRK05958        114 AVLTALA----GKGDLIVSDKLNHASLIDGARLS---RARVRRYPHN-----DVDALEALLAKWRAGRALIVTESVFSMD  181 (385)
T ss_pred             HHHHHhC----CCCCEEEEeCccCHHHHHHHHhc---CCceEEeCCC-----CHHHHHHHHHhccCCCeEEEEEecccCC
Confidence            7777776    89999999999999998876655   8888887653     88999998865   36788888899999


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEEecCCCccccc
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP  280 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~  280 (457)
                      |...++++|.++|++||+++|+|++|+.|....         .+.....++++.|++|.+|+.| |+++.+++..+.+..
T Consensus       182 G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~~~  260 (385)
T PRK05958        182 GDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGSSG-AAVLGSETLIDYLIN  260 (385)
T ss_pred             CCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhcccCC-cEEEcCHHHHHHHHH
Confidence            999999999999999999999999997653321         1222234588899999889887 888877654443321


Q ss_pred             cccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      .....     ...+..++.+++++.++++..... ++..+++.++.+++.+.|.+ + ++.+..+    ..+++.+.++.
T Consensus       261 ~~~~~-----~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~~~~~~  328 (385)
T PRK05958        261 RARPF-----IFTTALPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRA-L-GFQLMDS----QSAIQPLIVGD  328 (385)
T ss_pred             hCccc-----eecCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCcCCC----CCCEEEEEeCC
Confidence            11100     112234555666666777766543 57788999999999999988 4 4554332    23445555543


Q ss_pred             -ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          361 -VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       361 -~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                       .+..++...|  +||.+.++.....                ..+++++||+++.+++++|+++++++|+++
T Consensus       329 ~~~~~~~~~~l~~~gI~v~~~~~~~~----------------~~~~~~lRis~~~~~~~~~i~~~l~~l~~~  384 (385)
T PRK05958        329 NERALALAAALQEQGFWVGAIRPPTV----------------PAGTSRLRITLTAAHTEADIDRLLEALAEA  384 (385)
T ss_pred             HHHHHHHHHHHHHCCceEecccCCCC----------------CCCCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence             2344566666  6888865321110                112368999999999999999999999875

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.96  E-value=2.1e-26  Score=229.06  Aligned_cols=332  Identities=14%  Similarity=0.124  Sum_probs=228.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--C-CCcEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--S-PKEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~-~~~i~~t~g~  127 (457)
                      .+.+.|..+.+. ..++.+.+++.+.......       .|+  ......++++.+++++    |.  + ++++++|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~Y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~  100 (391)
T PRK07309         30 PGILKLTLGEPDFTTPDHVKEAAKRAIDANQS-------HYT--GMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGA  100 (391)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-------CCC--CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence            456777776666 4567788888877653210       011  1122456666666665    33  2 3679999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCC---CceEEEEe
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRP---DTGLISVM  203 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~---~t~li~i~  203 (457)
                      |+|+++++.++.    ++|+.|++..+.|..+...++..   |.+++.++.+.+ +.+|+++++++++.   ++++++++
T Consensus       101 ~~al~~~~~~~~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~i~l~  173 (391)
T PRK07309        101 TEALSASLTAIL----EPGDKVLLPAPAYPGYEPIVNLV---GAEIVEIDTTENDFVLTPEMLEKAILEQGDKLKAVILN  173 (391)
T ss_pred             HHHHHHHHHHhc----CCCCEEEEeCCCCcchHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhhccCCCeEEEEEE
Confidence            999999999987    89999999999999988777665   999999998654 46899999999864   58899999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC--CcccEEEeccccccCCCC--ceEEEEec
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK--WNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~--~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +++||||.+++   +++|+++|++||+++++|++++....    ...+..  .+..+++.|++|.+|.+|  +|++++++
T Consensus       174 ~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRvG~~v~~~  253 (391)
T PRK07309        174 YPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSKSHAMTGWRIGLIFAPA  253 (391)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChhhccCccceeEEEEeCH
Confidence            99999999987   78889999999999999999874221    111111  123488899999888666  99999988


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++.....       +...+++.....++..+++..........++++++++++.+.|++ . ++.+..+. .  ..
T Consensus       254 ~~~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~p~-g--g~  321 (391)
T PRK07309        254 EFTAQLIKSHQ-------YLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTD-L-GFKIIKPD-G--AF  321 (391)
T ss_pred             HHHHHHHHHHh-------hcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCC-e--eE
Confidence            76666553321       111134444444444444322222345567778888889999988 4 66655432 1  12


Q ss_pred             eEEEEEcc-c--cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          353 NLNLSFAY-V--EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       353 ~~~~~~~~-~--~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      .+.+.++. .  +...+...+   +||.+.+|..+..                 ...++|||+++.  +.++++.++++|
T Consensus       322 ~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~~i~~l  382 (391)
T PRK07309        322 YIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGP-----------------YGEGYVRLSYAA--SMETIKEAMKRL  382 (391)
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHHHHHHH
Confidence            22334432 1  234555443   6999998865422                 123799999985  579999999999


Q ss_pred             HHHHHHHH
Q 040741          427 VKQVEKLR  434 (457)
Q Consensus       427 ~~~~~~~~  434 (457)
                      ++++++++
T Consensus       383 ~~~~~~~~  390 (391)
T PRK07309        383 KEYMEEHA  390 (391)
T ss_pred             HHHHHhhc
Confidence            99987764

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.96  E-value=4.1e-26  Score=227.35  Aligned_cols=319  Identities=19%  Similarity=0.213  Sum_probs=224.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~  171 (457)
                      +.|+....+.+.++|+.++++.|.+.  +++++|||+|+++++.++.    ++||+||++..+|.+....+.. +...|+
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~~~--av~~sSGt~Al~~al~~ll----~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi  129 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGGVG--AIATASGQAALHLAIATLM----GAGSHIVASSALYGGSHNLLHYTLRRFGI  129 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCccHHHHHHHHHHHhhCCe
Confidence            33444445789999999999999875  8999999999999999886    8999999999999988776654 456799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++++     |+++++++|+++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.....+ ..++|+
T Consensus       130 ~v~~vd~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~~~pl-~~GaD~  203 (433)
T PRK08134        130 ETTFVKPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYLLRPF-EHGADL  203 (433)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCCE
Confidence            99999975     899999999999999999999999999999999999999999999999999988765444 678999


Q ss_pred             EEeccccccCCCC--ceEEEEecCC--------CccccccccCCc-c--cc----------------ccccCCCChhHHH
Q 040741          252 MSLSGHKIYGPKG--VGALYMRRRP--------RIRVEPLINGGG-Q--ER----------------GIRSGTLPTPLIV  302 (457)
Q Consensus       252 ~~~s~~K~~g~~G--~G~l~~~~~~--------~~~~~~~~~~~~-~--~~----------------~~~~~t~~~~~~~  302 (457)
                      ++.|.||++|+.|  +|.+++....        ...+.+...+++ .  ..                .......++..++
T Consensus       204 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~  283 (433)
T PRK08134        204 VYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAW  283 (433)
T ss_pred             EEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            9999999888766  5555543211        111222221110 0  00                0000111211111


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---------------CcccceEEEEEccc--cchH
Q 040741          303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---------------RRYIGNLNLSFAYV--EGES  365 (457)
Q Consensus       303 al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~  365 (457)
                      -+..    -.+.++.++++..+++.++.+.|++ .|.+.-+..|.               ..+++++.|.+++-  ....
T Consensus       284 l~~~----gL~tl~~R~~~~~~nA~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~~g~gg~~s~~l~~~~~~~~~  358 (433)
T PRK08134        284 QLLQ----GIETLPLRMERHVANTRKVVAFLAS-HPAVARVAHPELESHPDHALAKRLLPRGAGSVFSFDLKGGRAAGRK  358 (433)
T ss_pred             HHhc----CCCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEecCCHHHHHH
Confidence            1111    1124788889999999999999998 78763322111               23577788887531  2345


Q ss_pred             HHhccc--CeEecccCccC----CCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          366 LLMGLK--EVAVSSGSACT----SASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       366 ~~~~l~--~i~~~~g~~~~----~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ++..|+  .++.+-|...+    +....+    .-..+..|+.+    +.|||+++.    ||+|.+++.|+++++..+.
T Consensus       359 f~~~l~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGl----E~~~dli~dl~~Al~~~~~  430 (433)
T PRK08134        359 FIESLKLFSHLANVGDARSLVIHPASTTHFRMDAAALAAAGIGE----GTIRLSIGL----EDADDLIDDLKRALKAAEK  430 (433)
T ss_pred             HHHhCCcceeccccCCCCceeeCCCccCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhhh
Confidence            666663  44445555433    222211    11234577765    899999997    7899999999999987654


Q ss_pred             c
Q 040741          436 M  436 (457)
Q Consensus       436 ~  436 (457)
                      .
T Consensus       431 ~  431 (433)
T PRK08134        431 A  431 (433)
T ss_pred             c
Confidence            3

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.95  E-value=2.9e-26  Score=227.93  Aligned_cols=325  Identities=17%  Similarity=0.171  Sum_probs=225.0

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPK-EIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~-~i~~t~g~T  128 (457)
                      +.+.|+.+.+. ++++.+.+++.+.+...  ...    .|+  ......++++.+++++    |.  +++ ++++|+|++
T Consensus        32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~  103 (385)
T PRK09276         32 DVISLGIGDPDLPTPDHIIEAMCKAVEDP--ENH----QYP--SYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSK  103 (385)
T ss_pred             CEEEecCCCCCCCCCHHHHHHHHHHHhCC--CCC----CCC--CCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcH
Confidence            44667766655 46778888888877531  101    111  1112445666666665    43  555 599999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +++.+++..++    ++||.|+++++.|+.+...++..   |.+++.++.+.  +..+|++++++.+.+++++|++++++
T Consensus       104 ~~i~~~~~~~~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~  176 (385)
T PRK09276        104 EGIAHIPLAFV----NPGDVVLVPDPGYPVYKIGTIFA---GGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPN  176 (385)
T ss_pred             HHHHHHHHHhC----CCCCEEEEcCCCCcChHHHHHHc---CCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCC
Confidence            99999999888    89999999999999988877666   99999999863  24579999999998899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----Cccc---CCC-CcccEEEeccccccCCCC--ceEEEEecC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      ||||.+.+   +++|+++|++||++|++|+++....    ....   ... .+..+++.|++|.||.+|  +|+++++++
T Consensus       177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~  256 (385)
T PRK09276        177 NPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGWRIGFAVGNAD  256 (385)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcchhheeeeCCHH
Confidence            99999998   5788889999999999999997321    1111   111 234678899999998777  999998877


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      .++++......      .. .+.+.....++..++......+++..++++++++++.+.|++ + ++.+..+. .  ..+
T Consensus       257 l~~~~~~~~~~------~~-~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~-~--~~~  324 (385)
T PRK09276        257 LIAGLGKVKSN------VD-SGVFQAIQEAGIAALNGPQEVVEELRKIYQERRDILVEGLRK-L-GLEVEPPK-A--TFY  324 (385)
T ss_pred             HHHHHHHHHhh------cc-CCCCHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCC-c--ceE
Confidence            66655443211      11 123333344444444333344677888889999999999998 5 66655432 1  222


Q ss_pred             EEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          354 LNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       354 ~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      +.+.++ ..+..++...+   +||.+.+|..|..                 ...+++||+++.  ++++++.++++|.
T Consensus       325 ~~v~~~~~~~~~~l~~~ll~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~l~  383 (385)
T PRK09276        325 VWAPVPKGYTSAEFATLLLDKAGVVVTPGNGFGE-----------------YGEGYFRIALTV--PDERIEEAVERIK  383 (385)
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCEEECCchhhCC-----------------CCCCeEEEEeCC--CHHHHHHHHHHHh
Confidence            344443 23456666654   4899998865421                 112799999974  5777777777664

>PLN02721 threonine aldolase

Probab=99.95  E-value=1.6e-26  Score=227.33  Aligned_cols=322  Identities=18%  Similarity=0.213  Sum_probs=218.3

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      +.|..+.++.+++.+.+++.+...   +.  . .+  ++  .+...++++.+++++|.+.  ++++++||+++.+++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~a~~~~~~---~~--~-~~--~~--~~~~~~l~~~la~~~~~~~--~~~~~~Gs~a~~~~l~~~   75 (353)
T PLN02721          8 VDLRSDTVTKPTDAMRAAMANAEV---DD--D-VL--GY--DPTALRLEEEMAKIFGKEA--ALFVPSGTMGNLISVLVH   75 (353)
T ss_pred             hhhhcccccCCCHHHHHHHHhccC---CC--c-cc--CC--CHHHHHHHHHHHHHhCCce--eEEecCccHHHHHHHHHH
Confidence            455555556677888888865311   11  0 11  12  1347889999999999865  788888999988888877


Q ss_pred             hhhhcC-CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-------CCceEEEEecc-cccc
Q 040741          139 MHFYKD-KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-------PDTGLISVMAV-NNEI  209 (457)
Q Consensus       139 ~~~~~~-~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-------~~t~li~i~~~-~~~~  209 (457)
                      .    + +||+|+++.++|.+.......+...|++++.++.+.++.+|+++++++++       +++++|+++++ +||+
T Consensus        76 ~----~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~  151 (353)
T PLN02721         76 C----DVRGSEVILGDNSHIHLYENGGISTLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCG  151 (353)
T ss_pred             c----cCCCCeEEEcCccceehhcccchhhhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccC
Confidence            6    5 99999999999987776322334559999999988788899999999998       68899999885 5668


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC--CCcccEEEeccccccCCCCceEEEEecCCCcccccc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE--KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPL  281 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~--~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~  281 (457)
                      |.+.|   +++|.++|+++|+++|+|+++.++..   ..+..  ..++|.+++|+||+++++..++++.+++.++.+...
T Consensus       152 G~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~  231 (353)
T PLN02721        152 GRCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRL  231 (353)
T ss_pred             CccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHH
Confidence            88877   78999999999999999999876532   11111  226789999999977654223466666555544333


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-eCCCCCcccceEEEEEcc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV-NGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  360 (457)
                      ....+       +.+......++ .++..+.+.+++ .++..++.+++.+.|++ ++++.+ ...+.   .+++.+.++.
T Consensus       232 ~~~~~-------~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~---~~~~~~~~~~  298 (353)
T PLN02721        232 RKTLG-------GGMRQVGVLAA-AALVALQENVPK-LEDDHKKAKLLAEGLNQ-IKGLRVNVAAVE---TNIVYFDITD  298 (353)
T ss_pred             HHhcC-------CCeehhHHHHH-HHHHHHHHHHHH-HHHHHHHHHHHHHHHHh-CCCcEEecCCcc---ceEEEEEccC
Confidence            22110       11111111111 112122222222 34446678899999988 777754 33222   3455566653


Q ss_pred             ---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          361 ---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       361 ---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                         .+...+...|  +||.+.++.                       ..+||++++.+++++|+++++++|++++..
T Consensus       299 ~~~~~~~~~~~~L~~~gi~v~~~~-----------------------~~~lR~~~~~~~~~~~i~~~~~~l~~~~~~  352 (353)
T PLN02721        299 GSRITAEKLCKSLEEHGVLLMPGN-----------------------SSRIRVVTHHQISDSDVQYTLSCFQQAALT  352 (353)
T ss_pred             CccccHHHHHHHHHhCCcEEecCC-----------------------CceEEEEecCcCCHHHHHHHHHHHHHHhhc
Confidence               3456677666  588877552                       268999999889999999999999987653

>PRK08363 alanine aminotransferase; Validated

Probab=99.95  E-value=4.4e-26  Score=227.55  Aligned_cols=333  Identities=15%  Similarity=0.166  Sum_probs=229.5

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeC
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~  125 (457)
                      .+.+.|..+.+.    ++++.+.+++.+.+.... +      .|+  ......++++.+++++    |  ++++++++|+
T Consensus        30 ~~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~~-~------~Y~--~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~  100 (398)
T PRK08363         30 IKVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEGH-N------YYG--PSEGLPELREAIVKREKRKNGVDITPDDVRVTA  100 (398)
T ss_pred             CCeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcCC-C------CCC--CCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeC
Confidence            356777776663    467889999988775320 0      111  1134566777777776    3  5778899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEE-eCCC-CCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL-PVGA-DGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v-~~~~-~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |+|+|+.+++.+++    ++||.|+++.++|+.+...++..   |..++.+ +.+. ++.+|++++++++++++++++++
T Consensus       101 G~~~al~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~  173 (398)
T PRK08363        101 AVTEALQLIFGALL----DPGDEILIPGPSYPPYTGLVKFY---GGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVI  173 (398)
T ss_pred             CHHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEE
Confidence            99999999999987    89999999999999998777655   8888777 4443 34689999999999999999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc------ccCCCCcccEEEeccccccCCCC--ceEEEE--
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP------VDVEKWNVSLMSLSGHKIYGPKG--VGALYM--  270 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~------~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~--  270 (457)
                      +++||||.+.+   +++|.++|+++|+++++|++|+.....      ..+.....-+++.|++|.|+.+|  +|++++  
T Consensus       174 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~  253 (398)
T PRK08363        174 NPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGWRLGYIYFVD  253 (398)
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchhccCCccceEEEEEEeC
Confidence            99999999988   888999999999999999998742111      11111122466789999876554  899998  


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      +++.++.+.........   .. ...+.....++..++....+.+.+..++++++++++.+.|.+ ++++.+..+.    
T Consensus       254 ~~~~~~~l~~~~~~~~~---~~-~~~s~~~q~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p~----  324 (398)
T PRK08363        254 PEGKLAEVREAIDKLAR---IR-LCPNTPAQFAAIAGLTGPMDYLEEYMKKLKERRDYIYKRLNE-IPGISTTKPQ----  324 (398)
T ss_pred             cHHHHHHHHHHHHHHhc---cc-ccCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCEecCCC----
Confidence            44443343332211000   01 134444444444555433345677788889999999999988 7777664431    


Q ss_pred             cceE-EEEEcc---ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          351 IGNL-NLSFAY---VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       351 ~~~~-~~~~~~---~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                      ++++ .+.++.   .+..+++.. +  +||.+.+|..+..                 ...++|||++.  .+.++++.++
T Consensus       325 g~~~~~~~l~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~-----------------~~~~~iRis~~--~~~~~l~~~l  385 (398)
T PRK08363        325 GAFYIFPRIEEGPWKDDKEFVLDVLHEAHVLFVHGSGFGE-----------------YGAGHFRLVFL--PPVEILEEAM  385 (398)
T ss_pred             eEEEEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEec--CCHHHHHHHH
Confidence            2322 224443   133444333 3  6899998864421                 12379999996  3689999999


Q ss_pred             HHHHHHHHH
Q 040741          424 ELTVKQVEK  432 (457)
Q Consensus       424 ~~l~~~~~~  432 (457)
                      ++|++++++
T Consensus       386 ~~l~~~~~~  394 (398)
T PRK08363        386 DRFEEFMRE  394 (398)
T ss_pred             HHHHHHHHH
Confidence            999988765

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.95  E-value=2.4e-26  Score=228.67  Aligned_cols=328  Identities=15%  Similarity=0.157  Sum_probs=226.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. ++++.+.+++.+.+...    .  ..  +|.......++++.+++++    |  ++++ ++++|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~--~~--~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs  101 (388)
T PRK07366         30 KELIDLSLGSSDLPAPAHALEAIAQSLHDP----S--TH--GYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGS  101 (388)
T ss_pred             CCeEEeCCCCCCCCCCHHHHHHHHHHHhCc----c--cC--CCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCc
Confidence            345777766666 55788999988876421    0  01  1111123456777777766    4  5777 69999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++++.+++.+++    ++||.|++..+.|+.+...++..   |.+++.++.+.+  ..+|++++++.+.+++++|+++++
T Consensus       102 ~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p  174 (388)
T PRK07366        102 QEGTAHLPLAVL----NPGDFALLLDPGYPSHAGGVYLA---GGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYP  174 (388)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCC
Confidence            999999999988    89999999999999998877766   999999998743  457888998888888999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----C-cccC---CCC-cccEEEeccccccCCCC--ceEEEEe
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----I-PVDV---EKW-NVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~-~~~~---~~~-~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      |||||.+.+   +++|+++|++||++||+|+++.--.    . ...+   ... ..-+++.|++|.+|.+|  +|+++++
T Consensus       175 ~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v~~  254 (388)
T PRK07366        175 HNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGFRIGFAIGN  254 (388)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccccCCcchhheehcCC
Confidence            999999988   5567789999999999999987321    1 1111   111 12467889999887555  9999988


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ++.++++........      .++.+ ....++.+++....+.+++.++.+++.++++.+.|++ + ++.+..+ .  ..
T Consensus       255 ~~li~~l~~~~~~~~------~~~~~-~~~~~a~~~l~~~~~~l~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p-~--~g  322 (388)
T PRK07366        255 AQLIQALRQVKAVVD------FNQYR-GILNGAIAALTGPQATVQQTVQIFRQRRDAFINALHQ-I-GWPVPLP-E--AT  322 (388)
T ss_pred             HHHHHHHHHHHhhcc------cCCCH-HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCC-C--ee
Confidence            777666654432111      11212 2222333344322345788888899999999999988 5 5543322 1  13


Q ss_pred             ceEEEEEccc---cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          352 GNLNLSFAYV---EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       352 ~~~~~~~~~~---~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      .++.+.++..   +..++...+   .||.+.+|..+..                 ...++|||+++.  +.+++++++++
T Consensus       323 ~f~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~~l~r  383 (388)
T PRK07366        323 MYVWAKLPEPWQGNSVEFCTQLVAQTGVAASPGSGFGK-----------------SGEGYVRFALVH--DPDILEEAVER  383 (388)
T ss_pred             EEEEEECCcccCCCHHHHHHHHHHhCCEEEeCchHhCc-----------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence            4444455421   245555444   4899998864421                 113799999974  58999999999


Q ss_pred             HHHH
Q 040741          426 TVKQ  429 (457)
Q Consensus       426 l~~~  429 (457)
                      |+++
T Consensus       384 l~~~  387 (388)
T PRK07366        384 IAAF  387 (388)
T ss_pred             HHHh
Confidence            8865

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.95  E-value=3.1e-26  Score=228.19  Aligned_cols=326  Identities=16%  Similarity=0.180  Sum_probs=221.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. +.|+++++++.+.+...    .  ..  +|.......++++.+++++    |  ++++ ++++|+|+
T Consensus        35 ~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~----~--~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~  106 (394)
T PRK05942         35 LDLIDLGMGNPDGAAPQPVIEAAIAALADP----Q--NH--GYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGS  106 (394)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC----C--Cc--cCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccCh
Confidence            345777765554 34566788777765421    0  01  1111123446666666665    5  3566 48999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++|+.+++.+++    ++||+|+++.++|+.+...+...   |.+++.++.+.  ++.+|++++++++++++++|+++++
T Consensus       107 ~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~P  179 (394)
T PRK05942        107 KEGLTHLALAYV----NPGDVVLVPSPAYPAHFRGPLIA---GAQIYPIILKPENDWLIDLSSIPEEVAQQAKILYFNYP  179 (394)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHHc---CCEEEEeecCCccCCccCHHHHHHhccccceEEEEcCC
Confidence            999999999887    89999999999999988776655   99999998873  3468999999999999999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----ccc---CCC-CcccEEEeccccccCCCC--ceEEEEec
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +||||.+.+   +++|.++|+++|+++|+|++++....    ...   +.. .+..+.+.|++|.||.+|  +|++++++
T Consensus       180 ~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~  259 (394)
T PRK05942        180 SNPTTATAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNR  259 (394)
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCH
Confidence            999999998   77899999999999999999863221    111   111 234577889999888666  99999988


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++.......       ..+.+.....++..+++...+.+++.+++++++++++.+.|.+ . ++.+..+ ..  +.
T Consensus       260 ~l~~~l~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~-~~--~~  327 (394)
T PRK05942        260 HIIQGLRTLKTNL-------DYGIFSALQKAAETALQLPDSYLQQVQERYRTRRDFLIQGLGE-L-GWNIPPT-KA--TM  327 (394)
T ss_pred             HHHHHHHHHHhhc-------ccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCC-Ce--ee
Confidence            7766665433211       1123334444455556544445778888899999999999988 4 6665543 11  22


Q ss_pred             eEEEEEcc-ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          353 NLNLSFAY-VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ++.+.++. .+..++... +  +||.+.+|..+..                 ...++|||+++.  +.+.+...++++.
T Consensus       328 f~~~~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~~l~  387 (394)
T PRK05942        328 YLWVPCPVGMGSTDFALNVLQKTGVVVTPGNAFGE-----------------GGEGYVRISLIA--DCDRLGEALDRLK  387 (394)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHCCEEEeCChhhCc-----------------CCCCeEEEEecC--CHHHHHHHHHHHH
Confidence            34444442 344555543 3  6999988764321                 113799999973  3455555554443

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.95  E-value=3.9e-26  Score=223.98  Aligned_cols=312  Identities=17%  Similarity=0.178  Sum_probs=215.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChHHHHHHHHHHhhh
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~T~a~~~al~~~~~  140 (457)
                      +.++++.+++.+.......++..          ....++++.+++++    |  ++++ ++++|+|+++++.+++.+++ 
T Consensus        13 ~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-   81 (350)
T TIGR03537        13 PTPPFIRKALIDAVPEVSQYPSA----------LGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-   81 (350)
T ss_pred             CCCHHHHHHHHHHHhccCCCCCC----------CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-
Confidence            44788888888775432212111          22345555666554    6  4676 89999999999999999887 


Q ss_pred             hhcCCC---CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CC-CCCCHHHHHHhcCCCceEEEEeccccccccccC-
Q 040741          141 FYKDKK---RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-AD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP-  214 (457)
Q Consensus       141 ~~~~~g---~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~-  214 (457)
                         ++|   +.|+++.+.|+.+...++..   |.+++.++.+ .+ ..+|+++++++++++++++++++++||||.+.+ 
T Consensus        82 ---~~g~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~  155 (350)
T TIGR03537        82 ---DPEEDRRRVIFGTPGYPVYERGALFA---GGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPR  155 (350)
T ss_pred             ---CCCCCCceEEEcCCCCcchHHHHHhc---CCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCH
Confidence               665   79999999999999888776   9999999986 33 348999999999989999999999999999999 


Q ss_pred             --hHHHHHHHHhcCCcEEEehhhhc---CCCcccCCC--CcccEEEeccccccCCCC--ceEEEEecCCCccccccccCC
Q 040741          215 --MEEIGQICKEFKIPFHTDAAQAL---GKIPVDVEK--WNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       215 --l~~i~~l~~~~~v~li~D~a~~~---g~~~~~~~~--~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~  285 (457)
                        +++|.++|+++|+++++|++++.   +..+.....  .+..+++.|++|.+|.+|  +|+++.+++..+++.......
T Consensus       156 ~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~~~~~~~~~~~~  235 (350)
T TIGR03537       156 SYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVGIENVLAFHSLSKRSGMTGYRSGFVAGDEKLISFLRKLRANF  235 (350)
T ss_pred             HHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcCcCCEEEEeecccccCCccccceeeecCHHHHHHHHHHHHhh
Confidence              88899999999999999999863   222211111  123477889999887666  899988766655555433211


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccch
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGE  364 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  364 (457)
                      +       ...+.....++..++.. ...+.+.+++++++.+.+.+.|.+ . ++.+..+ ..  +.++.+.++. .+..
T Consensus       236 ~-------~~~~~~~q~~~~~~l~~-~~~~~~~r~~l~~~~~~~~~~l~~-~-g~~~~~~-~g--~~~~~~~~~~~~~~~  302 (350)
T TIGR03537       236 G-------VASPDFVQAAAKAAWSD-DNHVLERRKIFKRKRDLFIEFFNK-V-GLEYLYP-DA--TFYLWVKVPSGIDAK  302 (350)
T ss_pred             c-------cCCCHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCC-Ce--EEEEEEECCCCCCHH
Confidence            1       12222222323233321 224567778888889999999988 4 6655432 11  2223445543 3456


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+...|  +||.+.+|..+..                 ...+++||++.  .++++++++++++++
T Consensus       303 ~l~~~L~~~gv~v~~g~~f~~-----------------~~~~~~Ri~~~--~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       303 DYALRLLENGIVVAPGENFGS-----------------GEEGYVRVALV--PTLEECEEALRLWER  349 (350)
T ss_pred             HHHHHHHHCCEEEcCchhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHhc
Confidence            666666  7999998865421                 11278999986  467888888887764

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.95  E-value=8.7e-26  Score=230.12  Aligned_cols=330  Identities=16%  Similarity=0.146  Sum_probs=225.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+++...|..+++++.+.+.......    .  .|.......++|+.++++++      +++++|++|+|+++|+.+++.
T Consensus        83 ~~~~~~~P~~~~~~~~~~~~~~~~~~----~--~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~  156 (481)
T PTZ00377         83 PSVSSLFPADVVARAKEYLNAIGGGT----G--AYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQ  156 (481)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCcc----c--CcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHH
Confidence            33444667888988877665431111    1  12222456677777777764      567889999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC------CceEEEEeccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP------DTGLISVMAVNNE  208 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~------~t~li~i~~~~~~  208 (457)
                      ++..   ++||.|++..+.|+.+...++..   |.+++.++.+.  ++.+|++++++++++      +++++++++++||
T Consensus       157 ~l~~---~~gD~Vlv~~P~y~~y~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NP  230 (481)
T PTZ00377        157 LLIG---DPSDGVMIPIPQYPLYSAAITLL---GGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNP  230 (481)
T ss_pred             Hhcc---CCCCEEEECCCCchhHHHHHHHc---CCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCC
Confidence            8863   58999999999999998887776   99999999873  347899999999875      7888888899999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc-c-------CCCC---c-ccEEEecccc-ccCCCC--ce
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV-D-------VEKW---N-VSLMSLSGHK-IYGPKG--VG  266 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~-~-------~~~~---~-~Di~~~s~~K-~~g~~G--~G  266 (457)
                      ||.+++   +++|+++|++||++||+|++|.--..    ++ .       ....   + .-+++.|++| ++|.+|  +|
T Consensus       231 TG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG  310 (481)
T PTZ00377        231 TGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGG  310 (481)
T ss_pred             CCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceE
Confidence            999999   78899999999999999999973211    11 1       1110   0 1256779999 577555  89


Q ss_pred             EEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHH
Q 040741          267 ALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI----------AKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       267 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~----------~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      |+++   +++.++++......       . .+++.....++..+++.          ....+.+..++++++++.+.+.|
T Consensus       311 ~~~~~~~p~~li~~l~~~~~~-------~-~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L  382 (481)
T PTZ00377        311 YFELTNIPPEVREQIYKLASI-------N-LCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDEL  382 (481)
T ss_pred             EEEEeCCCHHHHHHHHHHhhe-------e-cCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987   55555555433211       1 13444555555555531          22334555566788899999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccc-------------cchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-------------EGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      .+ ++++.+..+..   +.++.+.+...             +...++.. +  +||.+.+|..+..              
T Consensus       383 ~~-~~g~~~~~p~g---g~fl~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~--------------  444 (481)
T PTZ00377        383 NK-IEGVSCQPVEG---AMYAFPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQ--------------  444 (481)
T ss_pred             hc-CCCcEeecCCe---eEEEEeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCC--------------
Confidence            88 78888765321   22222222211             11223222 2  5999999976532              


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .  ...+++||+++  .+.++++.++++|++++++..
T Consensus       445 ~--~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~~~~  477 (481)
T PTZ00377        445 K--PGTYHFRITIL--PPEEQIEEMVKKIKEFHESFM  477 (481)
T ss_pred             C--CCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHH
Confidence            1  12369999998  568999999999999988654

>PRK07683 aminotransferase A; Validated

Probab=99.95  E-value=4.8e-26  Score=226.26  Aligned_cols=330  Identities=15%  Similarity=0.156  Sum_probs=229.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. +.++.+.+++.+.+.....         .|.......++|+.+++++    |.  +++ ++++|+|+
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~---------~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~   98 (387)
T PRK07683         28 DNLISLTIGQPDFPTPSHVKEAAKRAITENYT---------SYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGA   98 (387)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhcCCC---------CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCh
Confidence            456788777665 4567888998888764211         1111123456677777766    43  666 89999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      ++|+.+++.++.    ++|+.|+++.+.|..+...++..   |+++++++.+.+ ..+|.+++++.++++++++++++++
T Consensus        99 ~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~~p~  171 (387)
T PRK07683         99 SEAIDIAFRTIL----EPGTEVILPAPIYPGYEPIIRLC---GAKPVFIDTRSTGFRLTAEALENAITEKTRCVVLPYPS  171 (387)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCccchHHHHHHc---CCEEEEeecCcccCCCCHHHHHHhcCcCceEEEEeCCC
Confidence            999999999887    89999999999999887777665   999999998744 4578899999999899999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---CcccCCC----CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      ||||.+.+   +++|.++|+++|+++|+|++++...   ....+..    .+..+++.|++|.+|.+|  +|+++++++.
T Consensus       172 NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGlRiG~i~~~~~l  251 (387)
T PRK07683        172 NPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGWRIGFLFAPSYL  251 (387)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeeccccccCccceeEEEEcCHHH
Confidence            99999987   7888999999999999999987432   1111111    234688999999888555  9999998876


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++++.....       +.....+.....++...+......+++.+++++++++.+.+.|.+ . ++.+..+. .  +.++
T Consensus       252 ~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~-~--~~~~  319 (387)
T PRK07683        252 AKHILKVHQ-------YNVTCASSISQYAALEALTAGKDDAKMMRHQYKKRRDYVYNRLIS-M-GLDVEKPT-G--AFYL  319 (387)
T ss_pred             HHHHHHHHH-------hccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC-e--eEEE
Confidence            665543321       111122333333333333322233567777888889999999988 4 55544321 1  2223


Q ss_pred             EEEEcc--ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFAY--VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~~--~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ...++.  .+..++... +  +||.+.+|..+..                 ...+++||+++.  ++++++.++++|.+.
T Consensus       320 ~~~~~~~~~~~~~~~~~ll~~~gI~v~pg~~f~~-----------------~~~~~~Ri~~~~--~~~~~~~al~~l~~~  380 (387)
T PRK07683        320 FPSIGHFTMSSFDFALDLVEEAGLAVVPGSAFSE-----------------YGEGYVRLSYAY--SIETLKEGLDRLEAF  380 (387)
T ss_pred             EEecccCCCCHHHHHHHHHHhCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHH
Confidence            333432  344455543 2  6999999875421                 113799999985  688999999999988


Q ss_pred             HHH
Q 040741          430 VEK  432 (457)
Q Consensus       430 ~~~  432 (457)
                      +++
T Consensus       381 l~~  383 (387)
T PRK07683        381 LQQ  383 (387)
T ss_pred             HHh
Confidence            753

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=8e-26  Score=223.09  Aligned_cols=319  Identities=17%  Similarity=0.153  Sum_probs=228.6

Q ss_pred             cEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           58 PLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        58 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+.|+.+.+. ++++++.+++.+......++|..           ...++++.++++++++++++++|+|+++++.+++.
T Consensus        34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~  102 (369)
T PRK08153         34 RARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVR  102 (369)
T ss_pred             eeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence            3577777666 78899999998876543322211           25689999999999998999999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      +++    ++||.|++..+.|+.+...+...   |.+++.++.+.++ +|++++++.+ +++++++++++++||||.+.+.
T Consensus       103 ~~~----~~gd~vlv~~p~y~~~~~~~~~~---g~~~~~vp~~~~~-~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~  174 (369)
T PRK08153        103 LYV----EPGDPVVTSLGAYPTFNYHVAGF---GGRLVTVPYRDDR-EDLDALLDAARRENAPLVYLANPDNPMGSWHPA  174 (369)
T ss_pred             Hhc----CCCCEEEECCCcchHHHHHHHHc---CCeEEEeeCCCCC-CCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCH
Confidence            888    89999999999999988766655   9999999986554 7899988766 4678999999999999999998


Q ss_pred             HHHHHHHHhc--CCcEEEehhhhcCCC---cccCC-CCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCcc
Q 040741          216 EEIGQICKEF--KIPFHTDAAQALGKI---PVDVE-KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       216 ~~i~~l~~~~--~v~li~D~a~~~g~~---~~~~~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      +++.++++.+  +++||+|++++.-..   ...+. .....+++.|++|.+|.+|  +|+++++++.++++......   
T Consensus       175 ~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~v~~~~~~~~l~~~~~~---  251 (369)
T PRK08153        175 ADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTDDPNVIRMRTFSKAYGLAGARVGYAIGAPGTIKAFDKVRNH---  251 (369)
T ss_pred             HHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhcCCCEEEEecchHhccCcchheeeeecCHHHHHHHHHhhcC---
Confidence            8777776654  899999999863211   11111 1123477889999888665  89999987665555433311   


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccchH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGES  365 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  365 (457)
                            ...+.....++..+++. .+.+++..+..+++++++.+.|++ . ++.+..  ..  ..++.+.+..  .....
T Consensus       252 ------~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~~p--~~--~~f~~~~~~~~~~~a~~  318 (369)
T PRK08153        252 ------FGMNRIAQAAALAALKD-QAYLAEVVGKIAAARDRIAAIARA-N-GLTPLP--SA--TNFVAIDCGRDGAFARA  318 (369)
T ss_pred             ------CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCccCC--Cc--CcEEEEECCCCcccHHH
Confidence                  24555666655555542 223667778888888889888887 4 554332  11  3344444431  22446


Q ss_pred             HHhcc--cCeEec-ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVS-SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l--~~i~~~-~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +...+  +||.+. +|..                    ...+++|++++   +++|+++++++++++++.++
T Consensus       319 l~~~l~~~Gi~v~~p~~~--------------------~~~~~iRis~~---~~~~~~~~~~al~~~~~~~~  367 (369)
T PRK08153        319 VLDGLIARDIFVRMPGVA--------------------PLDRCIRVSCG---PDEELDLFAEALPEALEAAR  367 (369)
T ss_pred             HHHHHHHCCeEEeeCCCC--------------------CCCCeEEEecC---CHHHHHHHHHHHHHHHHHhh
Confidence            66655  688884 3321                    11269999998   58999999999999887554

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.95  E-value=1.1e-25  Score=227.94  Aligned_cols=303  Identities=16%  Similarity=0.209  Sum_probs=221.2

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEe
Q 040741           99 SEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLP  177 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~  177 (457)
                      ..+...++++++++++|++++++++++|||++++.++.++..   .++++|++++++|+++..+++.+ ...|++++.++
T Consensus       110 ~~~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~---~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~  186 (447)
T PRK00451        110 TLQAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRI---TKRKKVLVSGAVHPEYREVLKTYLKGQGIEVVEVP  186 (447)
T ss_pred             HHHHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHh---cCCCEEEEeCccCHHHHHHHHHHHHhCCcEEEEec
Confidence            446777888899999999988899999999999988887753   68899999999999999887753 44699999999


Q ss_pred             CCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEE--ehhhhcCCCcccCCCCcccEEEec
Q 040741          178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT--DAAQALGKIPVDVEKWNVSLMSLS  255 (457)
Q Consensus       178 ~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~--D~a~~~g~~~~~~~~~~~Di~~~s  255 (457)
                      .+.+ .+|++++++++++++++|+++++ |++|.+.|+++|.++|+++|+++++  |.. +.|.... ..++++|++++|
T Consensus       187 ~~~~-~~d~~~l~~~i~~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~~-~~~~~~D~~~~s  262 (447)
T PRK00451        187 YEDG-VTDLEALEAAVDDDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLKP-PGEYGADIVVGE  262 (447)
T ss_pred             CCCC-CCCHHHHHHhcCCCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCCC-cccCCCCEEEEC
Confidence            8877 89999999999999999999998 8899999999999999999999998  644 4554432 356789999998


Q ss_pred             cccc-----cCCCCceEEEEecCCCccccccccCCccc-----------------cccccCCCChhH---HH--HHHHHH
Q 040741          256 GHKI-----YGPKGVGALYMRRRPRIRVEPLINGGGQE-----------------RGIRSGTLPTPL---IV--GFGSAC  308 (457)
Q Consensus       256 ~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~t~~~~~---~~--al~~al  308 (457)
                      .+|+     +|++|+|+++++++....+.+...|+...                 .+...++.+...   +.  +...++
T Consensus       263 ~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l  342 (447)
T PRK00451        263 GQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYM  342 (447)
T ss_pred             CCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHH
Confidence            8774     45557999999988777665443333110                 112223333321   22  222234


Q ss_pred             HHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEec-ccCccCCC
Q 040741          309 EIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVS-SGSACTSA  384 (457)
Q Consensus       309 ~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~-~g~~~~~~  384 (457)
                      +.+ .++++++.+++.++++++.+.|.+ ++++.+...   .....+.+.++ .+..++.+.|  ++|... .+....  
T Consensus       343 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~---~~~~~~~v~~~-~~~~~~~~~L~~~gi~~~~~~~~~~--  415 (447)
T PRK00451        343 SLLGPEGLRELAEQNHQKAHYLAERLAE-IGGVELFDG---PFFNEFVVRLP-KPAEEVNEALLEKGILGGYDLGRYY--  415 (447)
T ss_pred             HHHCHHHHHHHHHHHHHHHHHHHHHHhh-cCCEEecCC---CeEEEEEEecC-CCHHHHHHHHHhcCCCCCccccccc--
Confidence            433 346899999999999999999999 888887622   11122223332 3456777777  444321 111100  


Q ss_pred             CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                                    +.. .+.+|++++.++|++|+++++++|++.+
T Consensus       416 --------------~~~-~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        416 --------------PEL-GNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             --------------CCc-CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                          011 2689999999999999999999998753

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.95  E-value=1.1e-25  Score=225.04  Aligned_cols=319  Identities=17%  Similarity=0.177  Sum_probs=224.9

Q ss_pred             CCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           69 VDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++.+++.+.+... ++.+.+   ....+..+...++++.+++++|.+ +++++|+| ++++..+++++.    ++||
T Consensus        57 ~~~~i~~a~~~~~~~~~~~~~~~---~~~~G~~~l~~~l~~~la~~~g~~-~~i~~tsG-~~a~~~~~~~l~----~~gd  127 (397)
T PRK06939         57 NHPELIAAAKAALDSHGFGMASV---RFICGTQDLHKELEEKLAKFLGTE-DAILYSSC-FDANGGLFETLL----GKED  127 (397)
T ss_pred             CCHHHHHHHHHHHHHcCCCCccc---ccccCCcHHHHHHHHHHHHHhCCC-cEEEEcCh-HHHHHHHHHHhC----CCCC
Confidence            6889999999988652 222111   111122367888999999999975 55666665 888999888887    8999


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccccccccccChHHHHHH
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQPMEEIGQI  221 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~l~~i~~l  221 (457)
                      +|+++++.|+++...++.+   |.+++.++.     .|++++++++++      ++++|++.+++|++|...++++|.++
T Consensus       128 ~vi~~~~~~~~~~~~~~~~---~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~~~~l~~l  199 (397)
T PRK06939        128 AIISDALNHASIIDGVRLC---KAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDL  199 (397)
T ss_pred             EEEEEhhhhHHHHHHHHhc---CCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCCHHHHHHH
Confidence            9999999999998877666   888777754     388888888763      67889988899999999999999999


Q ss_pred             HHhcCCcEEEehhhhcCCCccc------CC--CCcccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccc
Q 040741          222 CKEFKIPFHTDAAQALGKIPVD------VE--KWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIR  292 (457)
Q Consensus       222 ~~~~~v~li~D~a~~~g~~~~~------~~--~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~  292 (457)
                      |++||+++|+|++|+.|.....      ..  ..++|++++|+||.+ |+. +|+++++++.++.+.......     ..
T Consensus       200 a~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~~~~l~~~~~~~-----~~  273 (397)
T PRK06939        200 ADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEVIDWLRQRSRPY-----LF  273 (397)
T ss_pred             HHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHHHHHHHHhCccc-----cc
Confidence            9999999999999976533211      11  124689999999966 565 599999877665554321110     11


Q ss_pred             cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc-
Q 040741          293 SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL-  370 (457)
Q Consensus       293 ~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l-  370 (457)
                      .+++++..++++.++++.+. ...+..++++++++++.+.|.+ + ++.+..+ .   ..++.+.++. .+..++...| 
T Consensus       274 ~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~L~  346 (397)
T PRK06939        274 SNSLAPAIVAASIKVLELLE-ESDELRDRLWENARYFREGMTA-A-GFTLGPG-E---HPIIPVMLGDAKLAQEFADRLL  346 (397)
T ss_pred             cCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC-C---CCEEEEEECCHHHHHHHHHHHH
Confidence            23444555566666776654 3467788899999999999988 4 4544321 1   2333333332 2345666665 


Q ss_pred             -cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          371 -KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       371 -~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                       +||.+.++.+..                ......+||++++.+++++++++++++|+++++++
T Consensus       347 ~~gI~v~~~~~~~----------------~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~  394 (397)
T PRK06939        347 EEGVYVIGFSFPV----------------VPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL  394 (397)
T ss_pred             HCCceEeeeCCCC----------------CCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence             688877432211                01123689999999899999999999999987754

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=4.9e-26  Score=217.79  Aligned_cols=340  Identities=18%  Similarity=0.187  Sum_probs=239.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .+.++.++++.+.+.+.+-.++           +.+.++++++++++|+..  ++.++|||.|+.++++++..   ++||
T Consensus        12 ~i~~~e~~~v~~vl~sg~i~~G-----------~~v~~FE~~~ae~~G~k~--ava~~sgT~AL~laL~al~i---g~GD   75 (374)
T COG0399          12 SIGEEELAAVQEVLKSGWLTGG-----------PFVRRFEQAFAEYLGVKY--AVAVSSGTAALHLALLALAI---GPGD   75 (374)
T ss_pred             CcchHHHHHHHHHHHcCCeecC-----------hHHHHHHHHHHHHhCCCe--EEEecChHHHHHHHHHhcCC---CCCC
Confidence            3678899999999987543321           688999999999999876  99999999999999997764   8999


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK  226 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~  226 (457)
                      +||++..+|.+..+++.+.   |+++++++++. .+.+|++.||++|+++|+.|+..|.   .|...++++|.++|++||
T Consensus        76 eVI~ps~TfvATan~i~~~---Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVhl---~G~~~dm~~i~~la~~~~  149 (374)
T COG0399          76 EVIVPSFTFVATANAVLLV---GAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVHL---AGQPCDMDAIMALAKRHG  149 (374)
T ss_pred             EEEecCCchHHHHHHHHHc---CCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEehh---ccCCCCHHHHHHHHHHcC
Confidence            9999999999999999888   99999999994 4789999999999999999999887   799999999999999999


Q ss_pred             CcEEEehhhhcCCCcccC--CCCc-ccEEEeccccccCCCCceEEEEecCCC-ccccccccCCccc---cccccCCCChh
Q 040741          227 IPFHTDAAQALGKIPVDV--EKWN-VSLMSLSGHKIYGPKGVGALYMRRRPR-IRVEPLINGGGQE---RGIRSGTLPTP  299 (457)
Q Consensus       227 v~li~D~a~~~g~~~~~~--~~~~-~Di~~~s~~K~~g~~G~G~l~~~~~~~-~~~~~~~~~~~~~---~~~~~~t~~~~  299 (457)
                      ++||.|+||++|+..-+-  ..++ +-+++|-.+|.++....|+++.+++.+ ++++.+...|...   .....-.....
T Consensus       150 l~vIEDaAqa~Ga~y~gk~vGt~Gd~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G~N  229 (374)
T COG0399         150 LPVIEDAAQAHGATYKGKKVGSFGDIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELGYN  229 (374)
T ss_pred             CeEEEEcchhccCeecCcccccccceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecccc
Confidence            999999999999875432  1222 334444556865543348888887533 3333333222111   00111011111


Q ss_pred             -HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce--EEEEEcc--ccchHHHhccc--
Q 040741          300 -LIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN--LNLSFAY--VEGESLLMGLK--  371 (457)
Q Consensus       300 -~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~l~--  371 (457)
                       -+..+.+|+.+.+ +.++++.++.+++++++.+.|++ ++++.+...+......+  ..+.++.  .+.+.+...|+  
T Consensus       230 ~rm~~iqAAigl~QL~~l~~~~~~R~~~a~~Y~~~l~~-~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~~L~~~  308 (374)
T COG0399         230 YRLTEIQAAIGLAQLERLDEINERRREIAQIYAEALKG-LPGITLPPEPDGAVHAWHLYTILVDEEGISRDALMESLKEA  308 (374)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHHHHHhC
Confidence             1112333443333 35788899999999999999999 77766655443322222  2223332  34567777773  


Q ss_pred             CeEecccCccCCCCCChhHHHH------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          372 EVAVSSGSACTSASLEPSYVLR------ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       372 ~i~~~~g~~~~~~~~~~~~~l~------~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ||.  ...++.|-...|-|.-.      .+...+....+.+++.+....+.+|++++++.|++++..
T Consensus       309 gi~--~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~~  373 (374)
T COG0399         309 GVG--AVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLGS  373 (374)
T ss_pred             CCC--ceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhcc
Confidence            444  44445543333322111      122233456789999999999999999999999998753

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=1.5e-25  Score=221.00  Aligned_cols=332  Identities=16%  Similarity=0.117  Sum_probs=238.7

Q ss_pred             cEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           58 PLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        58 ~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      .-+++|.++.+    -.|++.++..+.++.+ |...+ ....-.+....+.++|+.||+++|.+.  +++.++|..|+..
T Consensus       102 r~~l~FsSndYLGL~~~p~v~~a~~~ai~~y-G~g~~-gSrl~~G~~~~h~~LE~~LA~f~g~e~--all~sSGy~AN~~  177 (476)
T PLN02955        102 KKLLLFSGNDYLGLSSHPTISNAAANAAKEY-GMGPK-GSALICGYTTYHRLLESSLADLKKKED--CLVCPTGFAANMA  177 (476)
T ss_pred             ceEEEeeccCccCCCCCHHHHHHHHHHHHHc-CCCCC-CcCccccChHHHHHHHHHHHHHHCCCc--EEEECChHHHHHH
Confidence            35777877774    4688999988888764 32211 112222333688899999999999876  8888889999999


Q ss_pred             HHHHhhh----------hhcCCCCEEEEcCCCCcchHHHHHHHHhc-CcEEEEEeCCCCCCCCHHHHHHhcC---CCceE
Q 040741          134 SIKGVMH----------FYKDKKRHVITTQTEHKCVLDSCRHLQQE-GFEITYLPVGADGIVNLDELRAAIR---PDTGL  199 (457)
Q Consensus       134 al~~~~~----------~~~~~g~~vi~~~~~h~~~~~~~~~~~~~-G~~v~~v~~~~~~~~d~~~le~~i~---~~t~l  199 (457)
                      ++.++..          ...++++.|+++...|.|...+++..+.. ++++..++.+     |+++|+++++   .+.++
T Consensus       178 ~i~aL~~~~~~~~~~~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~~~~~  252 (476)
T PLN02955        178 AMVAIGSVASLLAASGKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKMKRKV  252 (476)
T ss_pred             HHHHHhhccccccccccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCCCceE
Confidence            8888731          01156788999999999999999987544 4788888877     8999998874   34678


Q ss_pred             EEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEE
Q 040741          200 ISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYM  270 (457)
Q Consensus       200 i~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~  270 (457)
                      |+++.+.++.|.+.|+++|.++|++||+++++|+||++|....         ++. .++|+++.|++|.+|..| |++++
T Consensus       253 Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~-~di~ii~~TLsKA~G~~G-Gfi~g  330 (476)
T PLN02955        253 VVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCE-ADVDLCVGTLSKAAGCHG-GFIAC  330 (476)
T ss_pred             EEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCC-CCCcEEEEeCccchhccC-ceeec
Confidence            9999999999999999999999999999999999999765422         221 257899999999999886 99999


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      +++.++.+.......     ..++..+++.+++..++++.+..+ +..+++++++.+++++.+     ++.+ .      
T Consensus       331 s~~~~~~l~~~~~~~-----ifStalpp~~aaa~laal~l~~~~-~~~r~~L~~n~~~fr~~~-----G~~~-~------  392 (476)
T PLN02955        331 SKKWKQLIQSRGRSF-----IFSTAIPVPMAAAAYAAVVVARKE-KWRRKAIWERVKEFKALS-----GVDI-S------  392 (476)
T ss_pred             HHHHHHHHHHhCCCC-----eecccccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhc-----CCCC-C------
Confidence            886555554322211     333455666777777888877654 456778888888888732     2221 1      


Q ss_pred             cceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          351 IGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       351 ~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .+++.+.+.. .....+...|  +||.+.+-.+.+.                +.+..++||+++..+|++||++++++|.
T Consensus       393 sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtV----------------P~g~~rLRi~lsA~Ht~edId~lv~~L~  456 (476)
T PLN02955        393 SPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTV----------------PPNSCRLRVTLSAAHTTEDVKKLITALS  456 (476)
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCC----------------CCCCceEEEeeCCCCCHHHHHHHHHHHH
Confidence            3344444432 2223445555  6887765443322                1233689999999999999999999999


Q ss_pred             HHHHHHH
Q 040741          428 KQVEKLR  434 (457)
Q Consensus       428 ~~~~~~~  434 (457)
                      ++.+...
T Consensus       457 ~~~~~~~  463 (476)
T PLN02955        457 SCLDFDN  463 (476)
T ss_pred             HHHhhhc
Confidence            8866543

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.95  E-value=7.1e-26  Score=226.26  Aligned_cols=333  Identities=15%  Similarity=0.118  Sum_probs=230.6

Q ss_pred             CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeC
Q 040741           56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-----ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-----~~~~~i~~t~  125 (457)
                      .+.+.|..+.+.     ++++.+.+++.+.+....        ..+|.......++++.++++++     ++++++++|+
T Consensus        31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~--------~~~Y~~~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~  102 (401)
T TIGR01264        31 KPMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGK--------YNGYAPTVGALSAREAIASYYHNPDGPIEADDVVLCS  102 (401)
T ss_pred             CCeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccC--------CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHEEECc
Confidence            355677766553     567889999888765310        1112112345678888888887     6778899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |+++|+.+++.+++    ++|++|+++.+.|..+...++..   |++++.++.+.  ++.+|++++++++++++++++++
T Consensus       103 G~~~al~~~~~~l~----~~gd~v~i~~P~y~~~~~~~~~~---g~~v~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~~  175 (401)
T TIGR01264       103 GCSHAIEMCIAALA----NAGQNILVPRPGFPLYETLAESM---GIEVKLYNLLPDKSWEIDLKQLESLIDEKTAALIVN  175 (401)
T ss_pred             ChHHHHHHHHHHhC----CCCCEEEEeCCCChhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHHhccCceEEEEc
Confidence            99999999999988    89999999999998887666555   99999988753  46799999999998889999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cc-cc---CCCCcccEEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IP-VD---VEKWNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~-~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||||.+.+   +++|+++|+++|+++++|+++.-..   .. ..   ......-+++.|++|.||.+|  +|++++.
T Consensus       176 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~iv~~  255 (401)
T TIGR01264       176 NPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRWLVPGWRLGWIIIH  255 (401)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccCCCccceEEEEEec
Confidence            99999999987   7788999999999999999997321   11 11   111112377889999877666  9999987


Q ss_pred             cC--CCccc-cccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          272 RR--PRIRV-EPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       272 ~~--~~~~~-~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                      +.  ....+ .....-.     .....++.....++..++.. ..+.+++..++++++++++.+.|++ ++++.+..+ .
T Consensus       256 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~-~~~~~~~~p-~  328 (401)
T TIGR01264       256 DRRGILRDIRDGLVKLS-----QRILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAA-VPGLRPVMP-S  328 (401)
T ss_pred             CcchhHHHHHHHHHHHh-----hccCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHh-CCCCcccCC-C
Confidence            42  11111 1111000     00113344444445455542 2345778888899999999999998 767554332 1


Q ss_pred             CcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          348 RRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       348 ~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .  +.++.+.++.      .+..++...+   +||.+.+|..+..                   .+++||+++.  ++++
T Consensus       329 ~--g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-------------------~~~iRis~~~--~~~~  385 (401)
T TIGR01264       329 G--AMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY-------------------PGFFRVVLTV--PVVM  385 (401)
T ss_pred             e--eeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC-------------------CCeEEEEEcC--CHHH
Confidence            1  3444444431      1344555543   5899988864321                   2799999985  5799


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          419 VDRAIELTVKQVEKL  433 (457)
Q Consensus       419 id~~~~~l~~~~~~~  433 (457)
                      ++..+++|.++++++
T Consensus       386 l~~~l~rl~~~~~~~  400 (401)
T TIGR01264       386 MEEACSRIQEFCERH  400 (401)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999888653

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.95  E-value=2.9e-25  Score=225.28  Aligned_cols=347  Identities=14%  Similarity=0.129  Sum_probs=229.6

Q ss_pred             EEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCc-cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           59 LYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRT-HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        59 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .|+..+.+. ..++.+.+++.+...  +.+.+... .....+..+...++++++++++|.+.. .++.++|+.+...++.
T Consensus        71 ~~~g~G~~~~~~~p~i~~~~~~~~~--~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~~-~l~~~~GA~a~~~~l~  147 (481)
T PRK04366         71 GFYPLGSCTMKYNPKINEKVARLPG--FAELHPLQPEETVQGALELMYELQEWLKEITGMDAV-TLQPAAGAHGELTGLL  147 (481)
T ss_pred             ceecCcccCCCCCHHHHHHHHhCcc--hhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCce-EEEeCcHHHHHHHHHH
Confidence            466666344 778888888887521  11211111 112344558889999999999999742 3443445444433222


Q ss_pred             HhhhhhcCCCC----EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          137 GVMHFYKDKKR----HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       137 ~~~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      .+..+..++|+    +|+++.+.|+++...+...   |++++.++.+.++.+|++++++++++++++|++++++ ++|.+
T Consensus       148 ~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~---G~~vv~v~~~~~~~~D~e~L~~~i~~~t~~V~v~~Pn-~tG~~  223 (481)
T PRK04366        148 MIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMA---GFKVVEIPSNEDGLVDLEALKAAVGEDTAALMLTNPN-TLGLF  223 (481)
T ss_pred             HHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHc---CCEEEEeecCCCCCcCHHHHHhhcccCCeEEEEeCCC-Ccccc
Confidence            21111114554    9999999999999876554   9999999998788999999999999999999999876 89987


Q ss_pred             -cChHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEEEecccccc------CCCCceEEEEecCCCccccccccC
Q 040741          213 -QPMEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLMSLSGHKIY------GPKGVGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       213 -~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~~~s~~K~~------g~~G~G~l~~~~~~~~~~~~~~~~  284 (457)
                       .|+++|+++|+++|+++++|+|+..+.. ..+..++++|++++++||++      |++|+|++++++++..++.+...+
T Consensus       224 ~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v~  303 (481)
T PRK04366        224 ERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVVE  303 (481)
T ss_pred             chHHHHHHHHHHHcCCEEEEEecChhhhcccCCccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCeee
Confidence             5899999999999999999999986532 24566789999999999953      345678999998766655433221


Q ss_pred             C---c---------cccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          285 G---G---------QERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       285 ~---~---------~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      .   .         ..++...++.+...+.++...+.. ..+++.++.++...+++++++.|.+ +..+  .-+  ....
T Consensus       304 ~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~-~~~~--~~~--~~~~  378 (481)
T PRK04366        304 KDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKD-IYDL--PYD--RPCM  378 (481)
T ss_pred             ccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hCcc--cCC--CCee
Confidence            0   0         001233333333222222222222 2345778888889999999999988 5222  211  1111


Q ss_pred             ceEEEEEc-----cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          352 GNLNLSFA-----YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       352 ~~~~~~~~-----~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      ..+.+.+.     +.+..++...|  +||.+..-.                  .+....+.+|+++...+|++|||++++
T Consensus       379 ~~~~~~~~~~~~~g~~~~~v~~~L~~~Gi~~~~~~------------------~p~~~~~~l~is~~e~~t~edid~l~~  440 (481)
T PRK04366        379 HEFVLSGKKLKETGVRTLDIAKRLLDYGFHPPTIY------------------FPLIVPEALMIEPTETESKETLDAFIA  440 (481)
T ss_pred             EEEEEECccccccCCCHHHHHHHHHHCCccCCccc------------------cccccCCeEEEcccCCCCHHHHHHHHH
Confidence            22233322     23456677777  455432100                  011123789999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 040741          425 LTVKQVEKLRE  435 (457)
Q Consensus       425 ~l~~~~~~~~~  435 (457)
                      +|+++.+++.+
T Consensus       441 ~l~~i~~~~~~  451 (481)
T PRK04366        441 AMKQIAEEAKE  451 (481)
T ss_pred             HHHHHHHHHHh
Confidence            99999988764

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=1e-25  Score=225.23  Aligned_cols=335  Identities=13%  Similarity=0.116  Sum_probs=228.7

Q ss_pred             CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEe
Q 040741           56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFT  124 (457)
Q Consensus        56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t  124 (457)
                      .+.|.|..+.+.     +.|+.+.+++.+.+....      ...  |.......++++.+++++      +++++++++|
T Consensus        32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~------~~~--Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it  103 (409)
T PLN00143         32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAK------FNS--YAPTGGILPARRAIADYLSNDLPYQLSPDDVYLT  103 (409)
T ss_pred             CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcC------CCC--CCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEe
Confidence            455777776664     778889999988776320      001  111123455777777776      3577889999


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEE
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISV  202 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i  202 (457)
                      +|+++++.+++.+++    ++|+.|++..+.|+.+...++..   |.+++.++.+  .+..+|+++++++++++++++++
T Consensus       104 ~G~~~al~~~~~~l~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~  176 (409)
T PLN00143        104 LGCKHAAEIIIKVLA----RPEANILLPRPGFPDVETYAIFH---HLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVI  176 (409)
T ss_pred             cChHHHHHHHHHHHc----CCCCEEEEcCCCCcCHHHHHHHc---CCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEE
Confidence            999999999999998    89999999999999988777665   9999999874  34568999999999989999999


Q ss_pred             eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cc-cc---CCCCcccEEEeccccccCCCC--ceEEEE
Q 040741          203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IP-VD---VEKWNVSLMSLSGHKIYGPKG--VGALYM  270 (457)
Q Consensus       203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~-~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~~  270 (457)
                      +++|||||.+.+   +++|+++|++|+++|++|++|.--.   .+ ..   +.....-+++.|++|.|+.+|  +||+++
T Consensus       177 ~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~  256 (409)
T PLN00143        177 INPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVT  256 (409)
T ss_pred             ECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEe
Confidence            999999999998   6778889999999999999997321   11 11   111223478889999877666  999998


Q ss_pred             e-cC-CCccc---cccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          271 R-RR-PRIRV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       271 ~-~~-~~~~~---~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                      . ++ .++.+   .......    .... ..+.....++..+++. ....+++..+++++..+++.+.|.+ +++.....
T Consensus       257 ~~p~~~~~~~~~~~~~~~~~----~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~  330 (409)
T PLN00143        257 CDPSGLLQICEIADSIKKAL----NPAP-FPPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKE-IPCIMCPQ  330 (409)
T ss_pred             eCchhhhhhHHHHHHHHHHH----hccC-CCCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCC
Confidence            4 32 22111   1111000    0001 1233444444444432 2234677788888888888888888 65443222


Q ss_pred             CCCCcccceEEEEEcc-----c-cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          345 SMERRYIGNLNLSFAY-----V-EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~-----~-~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      .++.  ..++.+.++.     . +..++...+   +||.+.+|..+              |.     .+++||+++.  +
T Consensus       331 ~p~g--g~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f--------------~~-----~~~iRi~~~~--~  387 (409)
T PLN00143        331 KAEG--AFFALVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTV--------------GL-----KNWLRITFAV--E  387 (409)
T ss_pred             CCCe--eEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEEeCcccc--------------CC-----CCeEEEEEcC--C
Confidence            2222  3344444432     1 234454333   69999998643              11     2799999984  5


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~  434 (457)
                      .+++++.+++|++++++..
T Consensus       388 ~~~l~~al~rl~~~l~~~~  406 (409)
T PLN00143        388 QSSLEDGLGRLKSFCGRHA  406 (409)
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            8999999999999987654

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=1.2e-25  Score=220.99  Aligned_cols=319  Identities=15%  Similarity=0.126  Sum_probs=220.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+.|+.+.+. ++|+.+++++.+.+.....+|.           ....++++.++++++++++++++|+|+++++.++
T Consensus        20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~~~~~~y~~-----------~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~   88 (356)
T PRK08056         20 DQLLDFSANINPLGMPVSLKRAIIDNLDCAERYPD-----------VEYRHLHQALARHHQVPASWILAGNGETESIFAV   88 (356)
T ss_pred             hhEEEeccccCCCCCCHHHHHHHHHHHHhcccCcC-----------ccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence            456888877665 7889999999887654321111           1367899999999999999999999999999998


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      +.++     .+++ +++..+.|..+...++..   |.+++.++.+.+  ..+| +++++.+.+++++|++++++||||.+
T Consensus        89 ~~~l-----~~g~-viv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~k~v~l~~p~NPTG~~  158 (356)
T PRK08056         89 VSGL-----KPRR-AMIVTPGFAEYRRALQQV---GCEIRRYSLREADGWQLT-DAILEALTPDLDCLFLCTPNNPTGLL  158 (356)
T ss_pred             HHHh-----CCCC-EEEeCCCcHHHHHHHHHc---CCeEEEEecccccCCCcc-HHHHHhccCCCCEEEEeCCcCCCCCC
Confidence            8865     3465 555667777666655544   999999998633  3444 45666777889999999999999999


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc-cCCCCcccEEEeccccccCCCC--ceEEEEec-CCCcccccc
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGKI----PV-DVEKWNVSLMSLSGHKIYGPKG--VGALYMRR-RPRIRVEPL  281 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~-~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~~~~~~~~  281 (457)
                      .+   +++|+++|+++++++++|+++.--..    .. .+...+.++++.|+||.+|.+|  +|++++.+ +.++++...
T Consensus       159 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~v~~~~~~~~~l~~~  238 (356)
T PRK08056        159 PERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFYAIPGLRLGYLVNSDDAAVARMRRQ  238 (356)
T ss_pred             CCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh
Confidence            99   78899999999999999999752111    00 1223346788999999988665  99998853 333333321


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      ..         ..+.+.....++..+++. .....+..++++++++++.+.|++ ++++.+..+ .   .+++.+.++ .
T Consensus       239 ~~---------~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~---~~~~~~~~~-~  302 (356)
T PRK08056        239 QM---------PWSINAFAALAGEVILQD-RAYQQATWQWLAEEGARFYQALCA-LPLLTVWPG-R---ANYLFLRCE-R  302 (356)
T ss_pred             CC---------CCchhHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC-C---CcEEEEEcC-C
Confidence            11         113333333333333321 123556678888999999999988 778766432 1   344444444 2


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +..++...|  +||.+.+|..+..                 ...++|||+++   +.++.++++++|+++++
T Consensus       303 ~~~~~~~~l~~~gI~v~~~~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        303 PDIDLQRALLTQRILIRSCANYPG-----------------LDSRYYRVAIR---SAAENERLLAALRNVLT  354 (356)
T ss_pred             ChHHHHHHHHHCCeEEEECCCCCC-----------------CCCCEEEEEEc---CHHHHHHHHHHHHHHHc
Confidence            345566655  7999998865421                 12369999997   47899999999987643

>PRK07550 hypothetical protein; Provisional

Probab=99.95  E-value=6.3e-26  Score=225.56  Aligned_cols=328  Identities=17%  Similarity=0.152  Sum_probs=227.5

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~  129 (457)
                      +.+.|..+.+. +.++.+.+++.+.....    ..  ..|+  ......++|+.+++++    |  .+++++++|+|+++
T Consensus        30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~Y~--~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~  101 (386)
T PRK07550         30 PLIDLSQAVPGYPPPPELLRALAEAAADP----AA--HLYG--PVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQ  101 (386)
T ss_pred             CeEEeCCCCCCCCCCHHHHHHHHHHHhCc----CC--cCCC--CCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHH
Confidence            45677666655 44677888887766321    10  1111  1123445555555554    4  46788999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      |+.+++.++.    ++||.|++..+.|..+...++..   |++++.++.+.  ++.+|++++++++++++++|++++++|
T Consensus       102 al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~N  174 (386)
T PRK07550        102 AFWAAMVTLA----GAGDEVILPLPWYFNHKMWLDML---GIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNN  174 (386)
T ss_pred             HHHHHHHHhc----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCC
Confidence            9999999987    89999999999998887666554   99999999863  345799999999998999999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccC---CC-CcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDV---EK-WNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~---~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      |+|.+.+   +++|+++|++||++||+|++++...    .+...   .. ....+++.|++|.+|.+|  +|+++.+++.
T Consensus       175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~  254 (386)
T PRK07550        175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPAR  254 (386)
T ss_pred             CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHH
Confidence            9999988   7789999999999999999986321    11111   11 123467889999777444  9999998766


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      +.++.......       ..+++.....++..+++...+.+++.+++++++++++.+.|.+ ++++.+...  .  ..++
T Consensus       255 ~~~~~~~~~~~-------~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~--g--~~~~  322 (386)
T PRK07550        255 IAEIEKFMDTV-------AICAPRIGQIAVAWGLPNLADWRAGNRAEIARRRDAFRAVFAR-LPGWELLAS--G--AYFA  322 (386)
T ss_pred             HHHHHHHHhhc-------ccCCCcHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-CCCceeCCC--c--eEEE
Confidence            55555433211       1234445555555566544445677778888999999999988 556554321  1  2333


Q ss_pred             EEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .+.++  +.+..++...+   .||.+.+|..+..                 ...+++||+++. .++++++.++++|.++
T Consensus       323 ~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        323 YVRHPFPDRPSREVARRLAKEAGILCLPGTMFGP-----------------GQEGYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             EecCCCCCCCHHHHHHHHHHhcCEEEeCchhhCC-----------------CCCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            34444  34566777664   4999998865421                 112799999975 4589999999988765

>PRK07908 hypothetical protein; Provisional

Probab=99.95  E-value=1.4e-25  Score=220.03  Aligned_cols=317  Identities=16%  Similarity=0.167  Sum_probs=221.7

Q ss_pred             cCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           54 IAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        54 ~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ...+.+.|+.+.+. ++++.+++++.+.+.....+|..          ....++++.+++++|++++++++|+|+++++.
T Consensus        20 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~   89 (349)
T PRK07908         20 AGPGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPST----------EDERRARAAVAARHGRTPDEVLLLAGAAEGFA   89 (349)
T ss_pred             CCCCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCc----------cchHHHHHHHHHHhCcChhhEEECCCHHHHHH
Confidence            34677888887765 57888999999887543323221          34678999999999999999999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      +++.  .    +++ .+++..+.|......++   ..|.+++.++.+.++.+|++.+    +++++++++++++||||.+
T Consensus        90 ~~~~--l----~~~-~viv~~P~y~~~~~~~~---~~G~~i~~v~~~~~~~~d~~~l----~~~~~~i~l~np~NPTG~~  155 (349)
T PRK07908         90 LLAR--L----RPR-RAAVVHPSFTEPEAALR---AAGIPVHRVVLDPPFRLDPAAV----PDDADLVVIGNPTNPTSVL  155 (349)
T ss_pred             HHHh--c----CCC-eEEEeCCCChHHHHHHH---HcCCEEEeeccCcccCcChhHh----ccCCCEEEEcCCCCCCCCC
Confidence            8877  3    454 45566666666655444   4599999999886677888754    5678899999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhc--CCCcccCC--CCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQAL--GKIPVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~--g~~~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      .|.++|.++|++ +.++|+|++++-  ......+.  ..+..+++.|+||.+|.+|  +|+++++++.++++.+....+ 
T Consensus       156 ~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~~~~i~i~S~SK~~~l~GlRiG~~~~~~~~~~~~~~~~~~~-  233 (349)
T PRK07908        156 HPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDLPGVLVLRSLTKTWSLAGLRVGYALGAPDVLARLTRGRAHW-  233 (349)
T ss_pred             cCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccCCCEEEEeecccccCCccceeeeeecCHHHHHHHHhcCCCC-
Confidence            999999999975 788999999862  21222221  1223456669999888555  799999887666655443221 


Q ss_pred             cccccccCCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                              ..+.....++...++ .....+++..++++++++++.+.|.+ + ++.+..+..   ..++.+.++.  ...
T Consensus       234 --------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p~~---g~~~~~~~~~--~~~  298 (349)
T PRK07908        234 --------PVGTLQLEAIAACCAPRAVAEAAADAARLAADRAEMVAGLRA-V-GARVVDPAA---APFVLVRVPD--AEL  298 (349)
T ss_pred             --------CccHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHh-C-CcEeccCCC---ceEEEEECCc--HHH
Confidence                    233333443333332 11234677888889999999999998 6 777665322   4444444442  445


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +...+  +||.+.+|..+..                 ...++|||+++   +++++++++++|++.+.
T Consensus       299 ~~~~l~~~gI~v~~g~~f~~-----------------~~~~~vRis~~---~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        299 LRKRLRERGIAVRRGDTFPG-----------------LDPDYLRLAVR---PRAEVPVLVQALAEILK  346 (349)
T ss_pred             HHHHHHhCCEEEEECCCCCC-----------------CCCCeEEEEeC---CCccHHHHHHHHHHHHh
Confidence            55555  6899998865421                 11379999996   57899999999987654

>PRK09082 methionine aminotransferase; Validated

Probab=99.95  E-value=1.1e-25  Score=223.56  Aligned_cols=332  Identities=17%  Similarity=0.108  Sum_probs=232.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PK-EIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~-~i~~t~g~T~a~  131 (457)
                      .+.+.|..+.+. +.++.+.+++.+.+.... +    .|....+..+..+.+.+.+.+++|.+  ++ ++++|+|+++|+
T Consensus        30 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-~----~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al  104 (386)
T PRK09082         30 HGAINLSQGFPDFDGPPYLVEALAYAMAAGH-N----QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEAL  104 (386)
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-C----CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHH
Confidence            456778776555 457888888888765321 0    11111122345666777777777864  33 699999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      .+++.+++    ++|++|++..+.|+++...++.+   |.+++.++.+ .++.+|+++++++++++++++++++++||||
T Consensus       105 ~~~~~~~~----~~gd~Vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG  177 (386)
T PRK09082        105 FAAILALV----RPGDEVIVFDPSYDSYAPAIELA---GGRAVRVALQPPDFRVDWQRFAAAISPRTRLIILNTPHNPSG  177 (386)
T ss_pred             HHHHHHHc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCcccccCCHHHHHHhcCccceEEEEeCCCCCCC
Confidence            99999988    89999999999999998887766   9999999986 4568999999999999999999999999999


Q ss_pred             cccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc---cCCC-CcccEEEeccccccCCCC--ceEEEEecCCCcc
Q 040741          211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV---DVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRIR  277 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~---~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~  277 (457)
                      .+.+   +++|.++|++||+++|+|++++....    ..   .... .+..+++.|++|.+|.+|  +|+++++++.++.
T Consensus       178 ~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l~~~  257 (386)
T PRK09082        178 TVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAALSAE  257 (386)
T ss_pred             cCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHHHHH
Confidence            8865   78889999999999999999863221    11   1111 235688899999887666  8999998776655


Q ss_pred             ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                      +......       ...+.+.....++...+....+.+++..+.++++++++.+.|++  .++.+..+ +.  ..++.+.
T Consensus       258 ~~~~~~~-------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~--~~~~~~~~-~g--~~~~~~~  325 (386)
T PRK09082        258 FRKVHQY-------NTFTVNTPAQLALADYLRAEPEHYLELPAFYQAKRDRFRAALAN--SRFKLLPC-EG--TYFQLVD  325 (386)
T ss_pred             HHHHHhh-------hcCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCC-Ce--eEEEEEe
Confidence            5443311       11134444444444444322334677788889999999999988  35655432 21  2233344


Q ss_pred             Ec---cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          358 FA---YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       358 ~~---~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ++   +.+..++...+   .||.+.+|..+..              . ....+++||+++.  ++++++..+++|++
T Consensus       326 ~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~--------------~-~~~~~~~Ri~~~~--~~~~l~~~~~rl~~  385 (386)
T PRK09082        326 YSAISDLDDVEFCQWLTREHGVAAIPLSVFYA--------------D-PFPHRLVRLCFAK--QEETLDAAAERLCQ  385 (386)
T ss_pred             ccccCCCCHHHHHHHHHHhCCEEEeCcHHhCC--------------C-CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            44   33456666654   4899998864321              0 1223799999986  68888888888764

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.95  E-value=2.8e-25  Score=220.14  Aligned_cols=329  Identities=13%  Similarity=0.147  Sum_probs=215.0

Q ss_pred             CHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           70 DPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        70 ~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      +|++.+++.+.++++. +...++.+ ||.  ...+.++|+.+++++|.+.  .++.++|+.++..++.++.    ++||+
T Consensus        14 ~~~~~~~~~~a~~~~g~~~~~sr~~-yg~--~~~~~~LE~~lA~~~g~e~--al~~~sG~~a~~~~i~~l~----~~GD~   84 (392)
T PLN03227         14 SPTLRQTALESLSHYGCGSCGPRGF-YGT--IDAHLELEQCMAEFLGTES--AILYSDGASTTSSTVAAFA----KRGDL   84 (392)
T ss_pred             CHHHHHHHHHHHHHhCCCCcccccc-cCC--hHHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHHHHHhC----CCCCE
Confidence            4567777777765432 22233332 333  3589999999999999863  5555556666678888887    89999


Q ss_pred             EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-----------CCceEEEEeccccccccccChHH
Q 040741          149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-----------PDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-----------~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      |++++..|++....+...   ++++++++.++  .-|++.+.+.++           +++++|+++.++|++|.+.|+++
T Consensus        85 Vl~~~~~h~s~~~~~~l~---~~~~~~~~~~d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~~l~~  159 (392)
T PLN03227         85 LVVDRGVNEALLVGVSLS---RANVRWFRHND--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLAPLKE  159 (392)
T ss_pred             EEEeccccHHHHHHHHHc---CCeEEEeCCCC--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCcccCHHH
Confidence            999999999998887554   77888777651  113344433442           36889999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCc---------ccCC-CCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIP---------VDVE-KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~---------~~~~-~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      |.++|++||+++|+|++|++|...         +++. ..++|++++|++|.+|+.| |+++++++..+.+.....+.  
T Consensus       160 i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~g~~g-g~v~~~~~~~~~~~~~~~~~--  236 (392)
T PLN03227        160 LVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAFGSVG-GMTVGSEEVVDHQRLSGSGY--  236 (392)
T ss_pred             HHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhhhccC-cEEecCHHHHHHHHHhCcCc--
Confidence            999999999999999999865331         1121 2356999999999888875 88887765544333221111  


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-------CcccceEEEEEcc
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-------RRYIGNLNLSFAY  360 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~  360 (457)
                         ...+..++..+.+...++....+ .+...++.+++.+++++.|++ . ++....+..       ....+++.+.+..
T Consensus       237 ---~~~~~~~p~~~~aa~~al~~~~~-~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~  310 (392)
T PLN03227        237 ---CFSASAPPFLAKADATATAGELA-GPQLLNRLHDSIANLYSTLTN-S-SHPYALKLRNRLVITSDPISPIIYLRLSD  310 (392)
T ss_pred             ---cccCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHh-c-CCccccccccccccCCCCCCCEEEEEeCC
Confidence               12223344445555556654433 367788899999999999975 2 221111100       0113445555532


Q ss_pred             cc----------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          361 VE----------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       361 ~~----------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ..          ...+...+  +|+.+.....+...         .+   +-.....|||+++..+|+||||+++++|++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~---------~~---~~~P~~~iR~~~~~~~t~eei~~~~~~l~~  378 (392)
T PLN03227        311 QEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKK---------FL---QLVPPPCLRVVANASHTREDIDKLLTVLGE  378 (392)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCC---------cC---CCCCCceEEEEecCCCCHHHHHHHHHHHHH
Confidence            11          12444444  57766431111000         00   011237899999999999999999999999


Q ss_pred             HHHHH
Q 040741          429 QVEKL  433 (457)
Q Consensus       429 ~~~~~  433 (457)
                      +++++
T Consensus       379 ~~~~~  383 (392)
T PLN03227        379 AVEAI  383 (392)
T ss_pred             HHHHH
Confidence            99875

>PRK08068 transaminase; Reviewed

Probab=99.95  E-value=1.1e-25  Score=224.01  Aligned_cols=327  Identities=15%  Similarity=0.112  Sum_probs=224.0

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. +.++.+.+++.+.+....      ..  .|.......++++++++++    |  ++++ ++++|+|+
T Consensus        32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~------~~--~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~  103 (389)
T PRK08068         32 HDVINLGQGNPDQPTPEHIVEALQEAAENPA------NH--KYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGG  103 (389)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHhCCC------CC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            345777766555 345778888888765310      01  1111123556777777776    5  5676 79999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++++.+++.+++    ++|+.|+++.++|+.+...++..   |++++.++.+.  +..+|++++++++++++++|+++++
T Consensus       104 ~~~l~~~~~~~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P  176 (389)
T PRK08068        104 KAGLVELPQCLM----NPGDTILVPDPGYPDYLSGVALA---RAQFETMPLIAENNFLPDYTKIPEEVAEKAKLMYLNYP  176 (389)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEeecccccCCCCCHHHHHHhccccceEEEEECC
Confidence            999999989888    89999999999999998877665   99999999874  3467999999999888999999999


Q ss_pred             ccccccccCh---HHHHHHHHhcCCcEEEehhhhcC---C-CcccC---C-CCcccEEEeccccccCCCC--ceEEEEec
Q 040741          206 NNEIGVIQPM---EEIGQICKEFKIPFHTDAAQALG---K-IPVDV---E-KWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       206 ~~~~G~~~~l---~~i~~l~~~~~v~li~D~a~~~g---~-~~~~~---~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +||||.+.+.   ++|+++|++|++++|+|+++..-   . .+...   . ..+..+++.|++|.||.+|  +|++++++
T Consensus       177 ~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~  256 (389)
T PRK08068        177 NNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGWRVAFAVGNE  256 (389)
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCccceeEeEecCH
Confidence            9999999995   67888999999999999999631   1 11111   1 1234578899999888666  99999888


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++.......      .. +.+.....++..++....+.+++.+++++++++.+.+.|++ + ++.+..+ ..  ..
T Consensus       257 ~l~~~l~~~~~~~------~~-~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~L~~-~-g~~~~~~-~g--~~  324 (389)
T PRK08068        257 SVIEAINLLQDHL------FV-SLFGAIQDAAIEALLSDQSCVAELVARYESRRNAFISACRE-I-GWEVDAP-KG--SF  324 (389)
T ss_pred             HHHHHHHHHHhhc------cC-CCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCC-Ce--eE
Confidence            7666654433211      11 22222233333344322345778888899999999999988 4 5554432 11  22


Q ss_pred             eEEEEEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          353 NLNLSFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       353 ~~~~~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ++.+.++. .+..++...+   .||.+.+|..+..                 ...++|||+++.  +++.+..++++|++
T Consensus       325 ~~~v~~~~~~~~~~~~~~l~~~~gi~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~l~~al~~l~~  385 (389)
T PRK08068        325 FAWMPVPKGYTSEQFADLLLEKAHVAVAPGNGFGE-----------------HGEGYVRVGLLT--DEERLREAVERIGK  385 (389)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCEEEecchHhCc-----------------cCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence            23445542 3556676665   4899988864321                 123799999974  45666666666654

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.95  E-value=1.1e-26  Score=228.84  Aligned_cols=301  Identities=16%  Similarity=0.128  Sum_probs=216.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~  178 (457)
                      .+...++++.+++++|.+  +++++++|+.|+.+++. ++    ++||+|+++.+.|.++...+.. +...|+++++++.
T Consensus        46 ~p~~~~le~~la~l~g~~--~~l~~~sG~~al~~~l~-ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~  118 (378)
T TIGR01329        46 NPTRTALESLLAKLDKAD--RAFAFSSGMAALDVITR-LL----NNGDEIIAGDDLYGGTDRLLTQVVPRSGVVVVHVDT  118 (378)
T ss_pred             ChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH-Hh----CCCCEEEEcCCCchHHHHHHHHHHHHcCcEEEEeCC
Confidence            356889999999999984  37777888889887665 55    8999999999999887765543 4566999999986


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                      .     |++++++++++++++|++++++||+|.+.|+++|+++|+++|+++++|++++.+.....+ .+++|++++|++|
T Consensus       119 ~-----d~~~le~~i~~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~~~~l-~~g~Di~v~S~tK  192 (378)
T TIGR01329       119 T-----DLDKVKAALGPKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLLCNPL-ELGADIVYHSATK  192 (378)
T ss_pred             C-----CHHHHHHhcCcCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCcEEEEecce
Confidence            5     899999999999999999999999999999999999999999999999999776543333 4589999999999


Q ss_pred             -ccCCCC--ceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          259 -IYGPKG--VGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       259 -~~g~~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                       +.|+.+  .|+++++++.. +++.+.....+       ...++....-+    ....+.+..++++..+++..+.+.|+
T Consensus       193 ~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~~G-------~~~~~~~a~l~----~~~l~tl~~R~e~~~~na~~la~~L~  261 (378)
T TIGR01329       193 FLAGHSDVMAGVLAVKGEEIAKKVYFLQNSTG-------SGLAPFDCWLL----LRGIKTLAIRIEKQQENARAIAMFLS  261 (378)
T ss_pred             eccCCccceeEEEEeCcHHHHHHHHHHHHhcC-------CcCCHHHHHHH----HccCCCHHHHHHHHHHHHHHHHHHHH
Confidence             556655  79988866433 44444332111       12222211111    11123477888888899999999998


Q ss_pred             hcCCCeE-EeCC-------------CCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccC----CCCCChh----
Q 040741          335 EKLDGVV-VNGS-------------MERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACT----SASLEPS----  389 (457)
Q Consensus       335 ~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~----~~~~~~~----  389 (457)
                      + .|.+. +.-+             ......+++.|.+.+.+ ..++...|  .+++++.|...+    +..+.+.    
T Consensus       262 ~-~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~~~~~~~~~~L~~~~i~~s~G~~~sl~~~p~~~~~~~~~~  340 (378)
T TIGR01329       262 T-HPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSVALSKRLVEATKLFSITVSFGSVNSLISMPCFMSHASIPA  340 (378)
T ss_pred             h-CCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCcCcccccCCCCCCceeeCCCccccccCCH
Confidence            8 66652 2211             11234677778875433 45677776  477888887533    3322221    


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      -.....|+.+    +.|||+++.    ||+|.+++.|++++++.
T Consensus       341 ~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~  376 (378)
T TIGR01329       341 EVREERGLPE----DLVRLSVGI----EDVDDLISDLDIAFVTA  376 (378)
T ss_pred             HHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhc
Confidence            1234566654    899999996    88999999999998753

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.95  E-value=1e-25  Score=224.69  Aligned_cols=331  Identities=15%  Similarity=0.114  Sum_probs=224.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH----hC---CCCC-cEEEeCC
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL----IG---ASPK-EIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~----~g---~~~~-~i~~t~g  126 (457)
                      .+.+.|..+.+. ++++.+.+++.+.+.....++..          ....++++.++++    .|   ++++ ++++|+|
T Consensus        29 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~Y~~~----------~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G   98 (396)
T PRK09147         29 LPPISLSIGEPKHPTPAFIKDALAANLDGLASYPTT----------AGLPALREAIAAWLERRYGLPALDPATQVLPVNG   98 (396)
T ss_pred             CCeEecCCCCCCCCCCHHHHHHHHHHhhhhcCCCCC----------CCCHHHHHHHHHHHHHHhCCCcCCccceEEECCC
Confidence            456777776665 45788888888766433222211          1233455555554    46   5554 7999999


Q ss_pred             hHHHHHHHHHHhhhhhcCC---CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEE
Q 040741          127 ATESNNVSIKGVMHFYKDK---KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~---g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~  201 (457)
                      +++++.++++++.    ++   |+.|+++.+.|..+...++.+   |.+++.+|.+.  ++.+|++++++.+.+++++++
T Consensus        99 ~~~al~~~~~~l~----~~~~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~  171 (396)
T PRK09147         99 SREALFAFAQTVI----DRDGPGPLVVCPNPFYQIYEGAALLA---GAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLF  171 (396)
T ss_pred             hHHHHHHHHHHHc----CCCCCCCEEEEcCCCccchHHHHHhc---CCEEEEeccCccccCccCHHHHHHHHhhccEEEE
Confidence            9999999999998    78   899999999999888877666   99999999863  346899999988888899999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC-----Cccc-------C--CCCcccEEEeccccccCCCC
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK-----IPVD-------V--EKWNVSLMSLSGHKIYGPKG  264 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~-----~~~~-------~--~~~~~Di~~~s~~K~~g~~G  264 (457)
                      +++++||||.+.+   +++|+++|++|+++|++|++++...     .+..       .  ...+.-+++.|++|.+|.+|
T Consensus       172 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G  251 (396)
T PRK09147        172 VCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPG  251 (396)
T ss_pred             EcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCcc
Confidence            9999999999987   6778888999999999999997421     1111       0  01123488999999877665


Q ss_pred             --ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          265 --VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       265 --~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                        +|+++++++.++++......       .....+.....++.+++. ..+.+.+.++.+++.++.+.+.|.+ .  +.+
T Consensus       252 lRiG~~~~~~~l~~~~~~~~~~-------~~~~~~~~~q~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~  320 (396)
T PRK09147        252 LRSGFVAGDAALLKKFLLYRTY-------HGCAMPPAVQAASIAAWN-DEAHVRENRALYREKFDAVTPILAP-V--LDV  320 (396)
T ss_pred             ceeeeecCCHHHHHHHHHHhhh-------cccCCCHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHHHHHHHH-h--cCC
Confidence              99999887766555433210       111334334443333332 1234677778888888888888877 3  332


Q ss_pred             eCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          343 NGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .. +.  .+.++.+.++ .+..++...+   +||.+.+|..+....         .  ......+++||+++.  +++++
T Consensus       321 ~~-p~--~g~f~~~~~~-~~~~~~~~~ll~~~gv~v~pg~~f~~~~---------~--~~~~~~~~iRi~~~~--~~~~l  383 (396)
T PRK09147        321 QL-PD--AGFYLWAKVP-GDDTEFARRLYADYNVTVLPGSYLAREA---------H--GVNPGAGRVRIALVA--PLAEC  383 (396)
T ss_pred             CC-CC--eeEEEEEECC-CCHHHHHHHHHHhCCEEEeCCccccccc---------c--CCCCCCCeEEEEecC--CHHHH
Confidence            22 11  1344444444 3455665554   599999987543200         0  011234799999985  57889


Q ss_pred             HHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVE  431 (457)
Q Consensus       420 d~~~~~l~~~~~  431 (457)
                      ++++++|+++++
T Consensus       384 ~~~l~rl~~~~~  395 (396)
T PRK09147        384 VEAAERIVDFCR  395 (396)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988763

>PRK09265 aminotransferase AlaT; Validated

Probab=99.95  E-value=2.9e-25  Score=221.98  Aligned_cols=335  Identities=15%  Similarity=0.140  Sum_probs=224.1

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeC
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~  125 (457)
                      .+.+.|+.+.+.    +.++++.+++.+.......++.          .....++++.+++++      +++++++++|+
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~----------~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~  102 (404)
T PRK09265         33 HKILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSD----------SKGLFSARKAIMQYYQQKGIPDVDVDDIYIGN  102 (404)
T ss_pred             CCeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCC----------CCCcHHHHHHHHHHHhccCCCCCCcccEEEeC
Confidence            356788776553    3678888888876543221111          123457888888887      67888999999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |+++++.+++.++.    ++||+|+++.++|..+...++..   |.+++.++.+.  ++.+|++++++++++++++|+++
T Consensus       103 G~~~~l~~~~~~~~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~  175 (404)
T PRK09265        103 GVSELIVMAMQALL----NNGDEVLVPAPDYPLWTAAVSLS---GGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVII  175 (404)
T ss_pred             ChHHHHHHHHHHhC----CCCCEEEEeCCCCcChHHHHHHc---CCEEEEEecccccCCCCCHHHHHHhccccceEEEEE
Confidence            99999999999887    89999999999999988877665   88888887653  45689999999999899999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCC--c-ccEEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKW--N-VSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~--~-~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||||.+.+   +++|.++|+++|+++++|++++--.    ....+...  + .-+++.|++|.+|.+|  +|++++.
T Consensus       176 ~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~v~~  255 (404)
T PRK09265        176 NPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLSKAYRVAGFRVGWMVLS  255 (404)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecchhhccCcccceEEEEEe
Confidence            99999999999   8889999999999999999986321    11111111  1 2356688999887666  8999974


Q ss_pred             c-C-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          272 R-R-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       272 ~-~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                      . . ..+.+........    ....+.+.....++..++.....  .+.+..+++.++++.+.+.|++ ++++.+..+. 
T Consensus       256 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~L~~-~~~~~~~~p~-  329 (404)
T PRK09265        256 GPKKHAKGYIEGLDMLA----SMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRDRAWELLNA-IPGVSCVKPK-  329 (404)
T ss_pred             CchHHHHHHHHHHHHHh----ccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCCC-
Confidence            2 2 1111111110000    00113444444545555532111  1122224566778888888887 7776655432 


Q ss_pred             CcccceEEEEEccc-----cchH-HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          348 RRYIGNLNLSFAYV-----EGES-LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       348 ~~~~~~~~~~~~~~-----~~~~-~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .  +.++.+.++..     +..+ +...+  +||.+.+|..+..                 ...+++||++.  .+.|++
T Consensus       330 ~--g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~-----------------~~~~~~Ri~~~--~~~e~l  388 (404)
T PRK09265        330 G--ALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNW-----------------PEPDHFRIVTL--PRVDDL  388 (404)
T ss_pred             c--ceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCC-----------------CCCCeEEEEeC--CCHHHH
Confidence            1  33444445421     2223 33333  6999998865421                 11379999995  578999


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKLR  434 (457)
Q Consensus       420 d~~~~~l~~~~~~~~  434 (457)
                      +.++++|+++++..+
T Consensus       389 ~~~l~rl~~~l~~~~  403 (404)
T PRK09265        389 EEAIGRIGRFLSGYR  403 (404)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999887543

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.95  E-value=2e-25  Score=222.85  Aligned_cols=333  Identities=14%  Similarity=0.089  Sum_probs=231.2

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESNNV  133 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~~~  133 (457)
                      +.+.|..+.+. +.++.+.+++.+.+.+..   .  .|....+..+..+.+.+.+++.+|.  +++++++|+|+++|+.+
T Consensus        34 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~---~--~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~  108 (402)
T PRK06107         34 SIVDLTVGEPDFDTPDHIKQAAVAAIERGE---T--KYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFL  108 (402)
T ss_pred             CEEEcCCCCCCCCCCHHHHHHHHHHHHcCC---C--CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHH
Confidence            44677766666 456888888888775321   0  1111112224556666677777676  56789999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++.++.    ++|+.|+++.+.|..+...+...   |..++.++.+.  ++.+|+++++++++++++++++++++||||.
T Consensus       109 ~~~~~~----~~gd~vl~~~p~y~~y~~~~~~~---~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~  181 (402)
T PRK06107        109 ALMATL----EAGDEVIIPAPYWVSYPDMVLAN---DGTPVIVACPEEQGFKLTPEALEAAITPRTRWLILNAPSNPTGA  181 (402)
T ss_pred             HHHHhc----CCCCEEEEecCCCcCHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHhhcCcCceEEEEECCCCCCCc
Confidence            998877    89999999999998887766554   77777787752  3468999999999989999999999999999


Q ss_pred             ccC---hHHHHHHHHhc-CCcEEEehhhhcC---CCc-ccCCC-----CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          212 IQP---MEEIGQICKEF-KIPFHTDAAQALG---KIP-VDVEK-----WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       212 ~~~---l~~i~~l~~~~-~v~li~D~a~~~g---~~~-~~~~~-----~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      +.+   +++|+++|+++ ++++|+|++++.-   ..+ ..+..     .+.-+++.|++|.||.+|  +|+++++++.++
T Consensus       182 ~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~~~~  261 (402)
T PRK06107        182 VYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPADLIA  261 (402)
T ss_pred             CcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHHHHH
Confidence            987   56778889998 9999999998631   111 11111     123577889999888666  799999887666


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++......       ....++.....++..++......+++..+.++++++.+.+.|++ ++++.+..+ +.  +.++.+
T Consensus       262 ~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~g~~~~~p-~g--g~~~~~  330 (402)
T PRK06107        262 AINKLQSQ-------SSSCPSSISQAAAAAALNGDQSFVTESVAVYKQRRDYALALLNA-IPGLSCLVP-DG--AFYLYV  330 (402)
T ss_pred             HHHHHHHh-------cccCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCCcccCC-Cc--ceEEee
Confidence            55543321       11244555555555555322234677788889999999999988 777766543 22  222223


Q ss_pred             EEcc------------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          357 SFAY------------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       357 ~~~~------------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      .++.            .+..++...+   +||.+.+|..+              |.     .+++||+++.  +.|++++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~F--------------g~-----~~~iRis~~~--~~e~l~~  389 (402)
T PRK06107        331 NCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAY--------------GL-----SPYFRLSIAT--SLETLEE  389 (402)
T ss_pred             ecccccccccccccCCCCHHHHHHHHHHhCCEEEeCcccc--------------CC-----CCeEEEEeCC--CHHHHHH
Confidence            3311            1234555443   59999998644              21     1699999995  6899999


Q ss_pred             HHHHHHHHHHHH
Q 040741          422 AIELTVKQVEKL  433 (457)
Q Consensus       422 ~~~~l~~~~~~~  433 (457)
                      ++++|.+.++++
T Consensus       390 ~l~~l~~~l~~~  401 (402)
T PRK06107        390 ACARIERAVAAL  401 (402)
T ss_pred             HHHHHHHHHHhc
Confidence            999999988765

>PRK12414 putative aminotransferase; Provisional

Probab=99.95  E-value=3.2e-25  Score=220.05  Aligned_cols=331  Identities=17%  Similarity=0.093  Sum_probs=228.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~t~g~T~a~  131 (457)
                      .+.+.|+.+.+. ++++.+.+++.+.+....    . .|....+..+..+.+++.+++++|++  + +++++|+|+++++
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al  103 (384)
T PRK12414         29 HDALNLSQGAPNFAPDPALVEGVARAMRDGH----N-QYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGL  103 (384)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHHhCC----C-CcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHH
Confidence            456888877666 457888998888765311    0 11111122356677777888888874  3 5799999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      .+++.+++    ++||+|+++.++|..+...++..   |.+++.++.+. ++.+|++++++++++++++|++++++||||
T Consensus       104 ~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~i~~p~NPTG  176 (384)
T PRK12414        104 YAAISALV----HPGDEVIYFEPSFDSYAPIVRLQ---GATPVAIKLSPEDFRVNWDEVAAAITPRTRMIIVNTPHNPSA  176 (384)
T ss_pred             HHHHHHhc----CCCCEEEEeCCCccchHHHHHHc---CCEEEEEecCccccccCHHHHHhhcCcccEEEEEcCCCCCCC
Confidence            99999988    89999999999998887776665   99999999874 457899999999998999999999999999


Q ss_pred             cccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cc-cCC---C-CcccEEEeccccccCCCC--ceEEEEecCCCcc
Q 040741          211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PV-DVE---K-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRIR  277 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~-~~~---~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~  277 (457)
                      .+++   +++|+++|++||+++++|++|.....   +. .+.   . .+..+++.|++|.+|.+|  +||++++++.+++
T Consensus       177 ~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRiG~~v~~~~l~~~  256 (384)
T PRK12414        177 TVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGWRVGYCLAPAELMDE  256 (384)
T ss_pred             cCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccceEEEEecCHHHHHH
Confidence            9876   77888999999999999999973211   11 111   1 123488999999888666  8999998876665


Q ss_pred             ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                      +.......       ....+.....++..+++.. ....+..+.++++++.+.+.|++ . ++.+..+. .  +.++.+.
T Consensus       257 l~~~~~~~-------~~~~s~~~q~a~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~-g--g~~~~~~  323 (384)
T PRK12414        257 IRKVHQFM-------VFSADTPMQHAFAEALAEP-ASYLGLGAFYQRKRDLLARELAG-S-RFELLPSE-G--SFFMLAR  323 (384)
T ss_pred             HHHHHhhe-------ecCCCcHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCC-c--ceEEEEc
Confidence            54433210       1133444444444444321 12345677788899999999998 4 56654321 1  1222233


Q ss_pred             Ecc---ccchHHH-hcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          358 FAY---VEGESLL-MGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       358 ~~~---~~~~~~~-~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ++.   ....++. ..+  +||.+.+|..|...               ....++|||+++.  ++++++..+++|.+
T Consensus       324 ~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRis~~~--~~~~~~~~~~rl~~  383 (384)
T PRK12414        324 FRHFSDESDSDFVLRLIRDARVATIPLSAFYTD---------------GTDTGLIRLSFSK--DDATLVEGARRLCS  383 (384)
T ss_pred             ccccCCCCHHHHHHHHHHhCCEEEecchhhcCC---------------CCCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence            432   1233444 333  69999998755321               1113799999995  57888888888753

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.95  E-value=1.9e-25  Score=207.30  Aligned_cols=325  Identities=17%  Similarity=0.229  Sum_probs=249.7

Q ss_pred             CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           68 PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      +.+|++++|+.+..+.. +|+|        +..++....+..+.++..+.+  ++.++|++|--.++.++++.+.    +
T Consensus        38 ~~pp~i~~Al~~rvdhGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~T----~  105 (388)
T COG1168          38 PTPPEIIEALRERVDHGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRALT----K  105 (388)
T ss_pred             CCCHHHHHHHHHHHhcCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHhC----c
Confidence            67899999999998743 4443        345568888999999988874  5569999999999999999999    9


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC--CCCHHHHHHhcCCC-ceEEEEeccccccccccC---hHH
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG--IVNLDELRAAIRPD-TGLISVMAVNNEIGVIQP---MEE  217 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~--~~d~~~le~~i~~~-t~li~i~~~~~~~G~~~~---l~~  217 (457)
                      +||.|++..+.|+.+...+..-   |-++...|.. .++  .+|+++||+++.+. .+++++|+||||+|.+-.   |.+
T Consensus       106 ~gd~Vvi~tPvY~PF~~~i~~n---~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~Grvwt~eeL~~  182 (388)
T COG1168         106 PGDGVVIQTPVYPPFYNAIKLN---GRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTGRVWTKEELRK  182 (388)
T ss_pred             CCCeeEecCCCchHHHHHHhhc---CcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCCccccHHHHHH
Confidence            9999999999999999888766   8888888876 444  56999999988654 699999999999999965   888


Q ss_pred             HHHHHHhcCCcEEEehhhh----cCCC--ccc-CCCC--cccEEEeccccccCCCC--ceEEEEecCC-CccccccccCC
Q 040741          218 IGQICKEFKIPFHTDAAQA----LGKI--PVD-VEKW--NVSLMSLSGHKIYGPKG--VGALYMRRRP-RIRVEPLINGG  285 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~----~g~~--~~~-~~~~--~~Di~~~s~~K~~g~~G--~G~l~~~~~~-~~~~~~~~~~~  285 (457)
                      |.+||++||+.||.|+.|+    .|..  ++. +...  +..+.+.|.+|.|...|  ++.++..++. +.+....+.. 
T Consensus       183 i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~n~~lr~~~~~~l~~-  261 (388)
T COG1168         183 IAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIISNRELRAKFLKRLKR-  261 (388)
T ss_pred             HHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEecCHHHHHHHHHHHHH-
Confidence            9999999999999999997    2322  221 2221  34577888899887665  6777766643 2333322221 


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                           ...+.+|..++.|..+|-+.....+++..+.++.+.+++.+.+.+.+|++++.. +++.+..++.++--+.++..
T Consensus       262 -----~~~~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~~-p~gTYL~WLD~r~l~l~d~~  335 (388)
T COG1168         262 -----NGLHGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKHLPGVKVTE-PQGTYLAWLDCRELGLDDSE  335 (388)
T ss_pred             -----hcCCCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec-CCCceeeeeeccccCCChHH
Confidence                 112467888888888888888888999999999999999999999899999987 44555555555444455545


Q ss_pred             HHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       366 ~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +...+   .+|++..|..+..                 .+.+.+|+.+.  ++++-+++++++|+.+++.+
T Consensus       336 l~~~ll~~akVal~~G~~FG~-----------------~g~gf~RlN~a--cpr~~L~eal~ri~~al~~~  387 (388)
T COG1168         336 LAEFLLEEAKVALSPGSTFGE-----------------EGSGFVRLNFA--CPRAILEEALERLKRALKKR  387 (388)
T ss_pred             HHHHHHHhhcEeccCCCccCc-----------------CCCceEEEecC--CCHHHHHHHHHHHHHHHhcc
Confidence            54444   6899998875432                 23489999987  47899999999999887653

>PLN02452 phosphoserine transaminase

Probab=99.95  E-value=1.4e-25  Score=218.12  Aligned_cols=337  Identities=18%  Similarity=0.169  Sum_probs=246.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCC--CccchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS--RTHLFGWESEVAVETARSQIADLIGASPK-E-IIFTSGATESNNVS  134 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~-i~~t~g~T~a~~~a  134 (457)
                      +|+-.+|+..+|++|++++.+.+.++.+...+  -....+..+.+.+.++++.|+++++.+.+ + +++++|||.++.++
T Consensus         8 ~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~   87 (365)
T PLN02452          8 VFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAI   87 (365)
T ss_pred             eEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHH
Confidence            67888899999999999999986543221111  01122556678999999999999998543 3 56668899999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC---CCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG---IVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~---~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      +.++.    .+++++++-.....+-. +++.++..|...+.......+   .+|+++++  .+++.+.|.+++..+.+|+
T Consensus        88 ~~nl~----~~~~~~l~~~~G~fg~r-~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~hnETstGv  160 (365)
T PLN02452         88 PLNLC----KPGDKADFVVTGSWSKK-AAKEAKKYCKTNVIASGKDEKYTKIPSVSEWE--LTPDAKFVHICANETIHGV  160 (365)
T ss_pred             HHhcC----CCCCeEEEEECCHHHHH-HHHHHHHhCCCcEEEecCCCCCCCCCChHHcC--CCCCCcEEEECCCCCCCcE
Confidence            99998    67787766554444433 345556667654444323222   56777653  2456789999999999999


Q ss_pred             c-cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC---c-
Q 040741          212 I-QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG---G-  286 (457)
Q Consensus       212 ~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~---~-  286 (457)
                      . .|++++.      ++++++|+++++|+.++++.++++|+  +|.||.+||+|+|+++++++++++..+.....   . 
T Consensus       161 ~~~~~~~i~------~~~lvVDa~Ss~g~~pidv~~~~v~~--~saqK~lGP~Gl~~v~vr~~~l~~~~~~~~~~~~~~~  232 (365)
T PLN02452        161 EFKDYPDVG------NVPLVADMSSNFLSKPVDVSKYGVIY--AGAQKNVGPSGVTIVIIRKDLIGNARPITPGMLDYKI  232 (365)
T ss_pred             ecCcccccC------CCeEEEECCccccCcccCHHHcCEEE--EecccccCCCCeEEEEEcHHHHhhcccCCCchhhHHH
Confidence            5 7788775      38999999999999999999888755  69999889999999999998877654332211   1 


Q ss_pred             -cccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CCCCCcccceEEEEEcccc
Q 040741          287 -QERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVN-GSMERRYIGNLNLSFAYVE  362 (457)
Q Consensus       287 -~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  362 (457)
                       .......+|||+..++++..+++++.+  +++.+.++.+++++++++.|++ .+++... .+++.+...++.|.+++.+
T Consensus       233 ~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~-~~G~y~~~~~~~~rs~~~vsF~~~~~~  311 (365)
T PLN02452        233 HAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDE-SNGFYVCPVEKSVRSLMNVPFTLGGSE  311 (365)
T ss_pred             HHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChHHhCCeEEEEEcCCch
Confidence             112334579999999999999999886  5999999999999999999998 7777211 1122344556666665432


Q ss_pred             -chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          363 -GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       363 -~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                       ..++...+  +|+....|...                     -+.+|+++-..++.++++.+++.|+++.++
T Consensus       312 ~~~~f~~~~~~~g~~~~~G~r~---------------------~gg~R~s~yna~~~~~v~~L~~~m~~f~~~  363 (365)
T PLN02452        312 LEAEFVKEAAKAGMVQLKGHRS---------------------VGGMRASIYNAMPLAGVEKLVAFMKDFQAK  363 (365)
T ss_pred             hHHHHHHHHHHCCCcccCCccc---------------------cCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence             33455555  57766665421                     134999999999999999999999998764

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.95  E-value=4.6e-26  Score=225.42  Aligned_cols=306  Identities=16%  Similarity=0.169  Sum_probs=219.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v  173 (457)
                      |++..++...++++.+++++|.+.  .+++++|+.|+.+++.++.    ++|++|+++.+.|.+....+... ...|+++
T Consensus        55 y~r~~~pt~~~Le~~lA~l~G~~~--al~~~sG~~Ai~~~l~al~----~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi~~  128 (386)
T PRK06767         55 YSRLGNPTVKLFEERMAVLEGGEE--ALAFGSGMAAISATLIGFL----KAGDHIICSNGLYGCTYGFLEVLEEKFMITH  128 (386)
T ss_pred             ccCCCCcchHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHHHhhcCeEE
Confidence            343344678899999999999754  7778888999999998887    89999999999998887766543 4457777


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      .+++..     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+....++ ..++|+++
T Consensus       129 ~~~~~~-----d~~~l~~~i~~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~pl-~~g~Div~  202 (386)
T PRK06767        129 SFCDME-----TEADIENKIRPNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQRPL-ELGCDAVV  202 (386)
T ss_pred             EEeCCC-----CHHHHHHhhCcCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hcCCcEEE
Confidence            777543     899999999999999999999999999999999999999999999999999865443333 35789999


Q ss_pred             eccccccCCCC---ceEEEEecCCCcccc-ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYGPKG---VGALYMRRRPRIRVE-PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       254 ~s~~K~~g~~G---~G~l~~~~~~~~~~~-~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      .|++|+++..|   .|+++++++.+.++. ......       .+..++...+.+..++    ..+..++++.++++.++
T Consensus       203 ~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~~~-------g~~~~~~~a~l~~~~L----~tl~~r~~~~~~~a~~l  271 (386)
T PRK06767        203 HSATKYIGGHGDVVAGVTICKTRALAEKIRPMRKDI-------GGIMAPFDAWLLLRGL----KTLAVRMDRHCDNAEKI  271 (386)
T ss_pred             ecCcceecCCCCceeEEEEeChHHHHHHHHHHHHHh-------CCCCCHHHHHHHHcCC----CcHHHHHHHHHHHHHHH
Confidence            99999776544   588988876554432 221111       1123322222221111    23567778889999999


Q ss_pred             HHHHhhcCCCeEEeCCCC--------CcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCC----CCCh----h
Q 040741          330 LNGIKEKLDGVVVNGSME--------RRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSA----SLEP----S  389 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~----~~~~----~  389 (457)
                      .+.|++ .|++..+..|.        ...++++.|.+++.  +...+...|  .++.++-|...+..    ...+    .
T Consensus       272 a~~L~~-~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~  350 (386)
T PRK06767        272 VSFLKN-HDAVEGVWYPEGELASRQMKRGGGVISFSIKGGKEETQAFINDLHFITIAVSLGDTETLIQHPATMTHAAIPA  350 (386)
T ss_pred             HHHHHc-CCCccEEECCCcHHHHHhCCCCCceEEEEEcCCHHHHHHHHHhCCccEEecCCCCcCccccCCCccccccCCH
Confidence            999999 88886443221        12467788887632  345677777  46777777654322    1111    1


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      -.....|+.+    +.|||+++.    ||+|.+++.|+++++.
T Consensus       351 ~~~~~~gi~~----~l~R~svGl----E~~~dl~~dl~~al~~  385 (386)
T PRK06767        351 ELRQEMGIYD----NLIRLSVGL----ESWEDIVSDLEQALKK  385 (386)
T ss_pred             HHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            1223456554    899999996    7888999999988864

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.95  E-value=3.4e-26  Score=225.43  Aligned_cols=306  Identities=17%  Similarity=0.161  Sum_probs=220.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+...++++.+++++|.+.  +++++||++|+.+++.++.    ++|++|+++.+.|.+....+. .+...|+
T Consensus        32 ~~y~r~~~p~~~~le~~la~l~g~~~--a~~~~sG~~Ai~~~l~~l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~  105 (369)
T cd00614          32 YIYSRIGNPTVDALEKKLAALEGGEA--ALAFSSGMAAISTVLLALL----KAGDHVVASDDLYGGTYRLFERLLPKLGI  105 (369)
T ss_pred             ceeECCCChhHHHHHHHHHHHHCCCC--EEEEcCHHHHHHHHHHHHc----CCCCEEEECCCCcchHHHHHHHHHhhcCe
Confidence            44555556889999999999999754  8888999999999999988    899999999999988876554 3356699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++.+++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+... ....+++|+
T Consensus       106 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~~-~~~~~g~Di  179 (369)
T cd00614         106 EVTFVDPD-----DPEALEAAIKPETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQ-RPLELGADI  179 (369)
T ss_pred             EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhcC-ChhhhCCcE
Confidence            99998866     799999999999999999999999999999999999999999999999999876542 223457899


Q ss_pred             EEeccccccCCCC---ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|++|+.|   +|+++.++ +..+++.......       .+..++.....+..++    +.+..++++..++++
T Consensus       180 vv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~~-------g~~~~p~~a~~~l~~l----~tl~~r~~~~~~na~  248 (369)
T cd00614         180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLAL-------GTILSPFDAWLLLRGL----KTLPLRMERHSENAL  248 (369)
T ss_pred             EEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHhh-------CCCCCHHHHHHHHcCC----CCHHHHHHHHHHHHH
Confidence            9999999765433   68898876 5555554333211       1233433333222222    345667888899999


Q ss_pred             HHHHHHhhcCCCeEEeCCC--------------CCcccceEEEEEcc--ccchHHHhccc--CeEecccCccC----CCC
Q 040741          328 RLLNGIKEKLDGVVVNGSM--------------ERRYIGNLNLSFAY--VEGESLLMGLK--EVAVSSGSACT----SAS  385 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~~l~--~i~~~~g~~~~----~~~  385 (457)
                      ++.+.|++ .|++..+-.+              ....++++.|.+.+  .....++..|+  .++.+-|...+    +..
T Consensus       249 ~la~~L~~-~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~  327 (369)
T cd00614         249 KVAEFLEK-HPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGLEAAKKFLNALKLFSLAVSLGGVESLVEHPAS  327 (369)
T ss_pred             HHHHHHHc-CCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHcCCcceEcccCCCCceeeeCCcc
Confidence            99999998 7765322111              12347777777763  12345555553  44555565433    222


Q ss_pred             CChh----HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          386 LEPS----YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       386 ~~~~----~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ..+.    -.....|+++    +.||++++.    ||+|.+++.|++++
T Consensus       328 ~~~~~~~~~~~~~~g~~~----~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         328 MTHSQLPPEERAAAGITP----GLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             cccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence            2221    1233556654    899999997    78888999988875

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.95  E-value=4.9e-26  Score=225.57  Aligned_cols=338  Identities=15%  Similarity=0.140  Sum_probs=231.2

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ..+||++.....+.++++.+...       +.+.  .+.|++...+...++++.+++++|+++  .+.+++|+.|+..++
T Consensus        29 ~~pi~~~~~~~~~~~~~~~~~~~-------~~~~--~~~y~r~~~p~~~~Le~~lA~l~G~~~--~~~~~sG~~Ai~~~l   97 (398)
T PRK07504         29 SEALFLTQGFVYDTAEAAEARFK-------GEDP--GFIYSRYSNPTVDMFEKRMCALEGAED--ARATASGMAAVTAAI   97 (398)
T ss_pred             cCCeECCCCccCCCHHHHHHHhc-------cCcC--CceeecCCCchHHHHHHHHHHHhCCCe--eeEecCHHHHHHHHH
Confidence            46799988776665555443211       1111  233333334678899999999999976  556788999998888


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      .++.    ++||+|+++.+.|.+....+.. +...|++++.++.     +|+++++++++++|++|++++++||+|.+.|
T Consensus        98 ~~~l----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd~-----~d~e~l~~ai~~~tklV~lesp~NptG~v~d  168 (398)
T PRK07504         98 LCQV----KAGDHVVAARALFGSCRYVVETLLPRYGIESTLVDG-----LDLDNWEKAVRPNTKVFFLESPTNPTLEVID  168 (398)
T ss_pred             HHHh----CCCCEEEEcCCchhHHHHHHHHHHhhcCeEEEEECC-----CCHHHHHHhcCcCceEEEEECCCCCCcEecC
Confidence            8777    8999999999999887665543 3456999988862     5899999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC--c-eEEEEecCCCcc-ccccccCCccccc
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG--V-GALYMRRRPRIR-VEPLINGGGQERG  290 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G--~-G~l~~~~~~~~~-~~~~~~~~~~~~~  290 (457)
                      +++|.++|+++|+++++|++++.+... .....++|+++.|++|++|..|  + |+++.+++.+.+ +.......     
T Consensus       169 l~~I~~la~~~gi~lvvD~a~a~~~~~-~~~~~gaDivv~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~~~-----  242 (398)
T PRK07504        169 IAAVAKIANQAGAKLVVDNVFATPLFQ-KPLELGAHIVVYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFRHT-----  242 (398)
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccC-CchhhCCCEEEeeccccccCCccceEEEEEeCcHHHHHHHHHHHHHh-----
Confidence            999999999999999999999876543 2234578999999999776443  4 566665543332 22111111     


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCC--CCC-----------cccceEEE
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGS--MER-----------RYIGNLNL  356 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~--~~~-----------~~~~~~~~  356 (457)
                        ...++...++.+...+    +.+..+.++..+++.++.+.|++ .|++. ++-+  +..           ..++++.|
T Consensus       243 --g~~~s~~~A~~~l~~L----~tl~~R~~~~~~na~~la~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~  315 (398)
T PRK07504        243 --GPSLSPFNAWTLLKGL----ETLPVRVRQQTESAAAIADFLAG-HPKVARVIYPGRADHPQADIIAKQMTGGSTLVAF  315 (398)
T ss_pred             --CCCCCHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHc-CCCccEEECCCCCCCccHHHHHHhCCCCccEEEE
Confidence              1133333333332232    23567777788999999999998 77764 2211  111           24678888


Q ss_pred             EEccc--cchHHHhccc--CeEecccCccC----CCCCC----hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          357 SFAYV--EGESLLMGLK--EVAVSSGSACT----SASLE----PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       357 ~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~~----~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      .+.+-  ....++..|+  .++++-|...+    +....    +.-..+..|+.+    +.|||+++.    ||.|.+++
T Consensus       316 ~~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~  387 (398)
T PRK07504        316 ELKGGKEAAFRFLNALKIVRISNNLGDAKSLITHPATTTHKNLSPEARAELGISE----GFLRLSAGL----EDTDDLIE  387 (398)
T ss_pred             EeCCCHHHHHHHHHhCCcceecccCCCCCeeeeCCCCCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHH
Confidence            88531  1235566663  55555565433    22222    122345677765    899999997    78888999


Q ss_pred             HHHHHHHHHH
Q 040741          425 LTVKQVEKLR  434 (457)
Q Consensus       425 ~l~~~~~~~~  434 (457)
                      .|++++++.+
T Consensus       388 dl~~al~~~~  397 (398)
T PRK07504        388 DLAAALKKVR  397 (398)
T ss_pred             HHHHHHHhhh
Confidence            9998887654

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.95  E-value=4.2e-25  Score=235.00  Aligned_cols=308  Identities=15%  Similarity=0.125  Sum_probs=229.1

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChH----HHHHHHHHHhhhhhcCCCC----EEEEcCCCCcchHHHHHHHHhc
Q 040741           98 ESEVAVETARSQIADLIGASPKEIIFTSGAT----ESNNVSIKGVMHFYKDKKR----HVITTQTEHKCVLDSCRHLQQE  169 (457)
Q Consensus        98 ~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T----~a~~~al~~~~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~  169 (457)
                      +..+.+.++++++++++|+  +++.|++++|    ++++++++++..   .+|+    +||++..+|.++...+...   
T Consensus       565 g~~~~~~~~r~~la~i~g~--~~v~f~pnaga~ge~a~~~vi~~~~~---~~Gd~~r~~vli~~~aH~sn~a~a~~~---  636 (993)
T PLN02414        565 GYQEMFEDLGDLLCEITGF--DSFSLQPNAGAAGEYAGLMVIRAYHL---SRGDHHRNVCIIPVSAHGTNPASAAMC---  636 (993)
T ss_pred             HHHHHHHHHHHHHHHHhCC--CeEEEcCCCcHHHHHHHHHHHHHHHh---ccCCCCCCEEEeCCCcCccCHHHHHHC---
Confidence            4457899999999999999  4599999999    899999998863   3366    8999999999999887664   


Q ss_pred             CcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCC-CcccCC
Q 040741          170 GFEITYLPVGADGIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK-IPVDVE  245 (457)
Q Consensus       170 G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~-~~~~~~  245 (457)
                      |+++++++++.+|.+|+++|++++++   ++++|++++++|.+|...|+++|+++||++|+++++|+|+..+. ...++.
T Consensus       637 G~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l~~p~  716 (993)
T PLN02414        637 GMKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGLTSPG  716 (993)
T ss_pred             CCEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCcCCcc
Confidence            99999999998999999999999984   78999999999999999999999999999999999999999887 344566


Q ss_pred             CCcccEEEecccc-cc-----CCCCceEEEEecCCCccccccccC--Cccccccc---cCCCCh---hHHHHHHHHHHHH
Q 040741          246 KWNVSLMSLSGHK-IY-----GPKGVGALYMRRRPRIRVEPLING--GGQERGIR---SGTLPT---PLIVGFGSACEIA  311 (457)
Q Consensus       246 ~~~~Di~~~s~~K-~~-----g~~G~G~l~~~~~~~~~~~~~~~~--~~~~~~~~---~~t~~~---~~~~al~~al~~~  311 (457)
                      ++++|++++|.|| ++     |++|+|++++++.+...+.....+  .+..++..   .|+.+.   .....+..|..++
T Consensus       717 ~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~yi  796 (993)
T PLN02414        717 FIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYTYI  796 (993)
T ss_pred             ccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHHHH
Confidence            8899999999999 55     355699999997544333221111  01111111   244333   2334444555554


Q ss_pred             H----HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc------cccchHHHhcc--cCeEecccC
Q 040741          312 K----KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA------YVEGESLLMGL--KEVAVSSGS  379 (457)
Q Consensus       312 ~----~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l--~~i~~~~g~  379 (457)
                      .    +++.+..++...+++|+++.|.+ ..++...++.+ .+..-+.+.+.      +++..++...|  .||....-+
T Consensus       797 ~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~-~~~hEfv~~~~~l~~~~g~~~~di~krL~d~Gihapt~~  874 (993)
T PLN02414        797 AMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNG-TCAHEFIIDLRPFKNTAGIEPEDVAKRLMDYGFHAPTMS  874 (993)
T ss_pred             HHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCC-CeeeeEEEeccccccccCCCHHHHHHHHHHcCcEEeeec
Confidence            3    34777788999999999999988 55555444322 22222333333      23446677776  455432110


Q ss_pred             ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          380 ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       380 ~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                     +  +   ..+.+|++++.+.+++|+|+++++|+...++..+
T Consensus       875 ---------------~--p---v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~  910 (993)
T PLN02414        875 ---------------W--P---VPGTLMIEPTESESKAELDRFCDALISIREEIAD  910 (993)
T ss_pred             ---------------c--c---cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHH
Confidence                           1  0   1389999999999999999999999999988875

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.95  E-value=1.6e-25  Score=209.89  Aligned_cols=267  Identities=19%  Similarity=0.245  Sum_probs=205.1

Q ss_pred             ecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC---CCCcEEEeCChHHHHHHHHH
Q 040741           61 LDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA---SPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        61 l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~~i~~t~g~T~a~~~al~  136 (457)
                      |.-+-++ +.|+-+.+++.+......-+    .+..+++..+....+++.++++.|.   ..++|++|.|+.+++..+++
T Consensus        36 LgqGfp~~~~P~fv~ea~~~~~~~~~~~----qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~  111 (420)
T KOG0257|consen   36 LGQGFPDFPPPKFVTEAAKNAAKEPSTN----QYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALL  111 (420)
T ss_pred             ccCCCCCCCCcHHHHHHHHHHhccchhc----cccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHH
Confidence            5555555 78888999999987653222    3444566668889999999998875   34579999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--------CCCCCCHHHHHHhcCCCceEEEEeccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--------ADGIVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--------~~~~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      +++    ++||+||+.++.|.++......+   |.++++++..        .++.+|++++|.+++++|++|+++.||||
T Consensus       112 ~l~----~~GDeVii~eP~fd~Y~~~~~ma---G~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t~kTk~Ii~ntPhNP  184 (420)
T KOG0257|consen  112 GLL----NPGDEVIVFEPFFDCYIPQVVMA---GGTPVFVPLKPKEGNVSSSDWTLDPEELESKITEKTKAIILNTPHNP  184 (420)
T ss_pred             HHc----CCCCEEEEecCcchhhhhHHhhc---CCcceeeccccccccccCccccCChHHHHhhccCCccEEEEeCCCCC
Confidence            999    99999999999999999998887   9999888876        45789999999999999999999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhc----CC--Ccc--cCCCCcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQAL----GK--IPV--DVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPR  275 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~----g~--~~~--~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~  275 (457)
                      +|.+++   |++|+++|++||+++|.|++|..    |.  ..+  ....+...+-++|++|.||..|  +||++..+.+.
T Consensus       185 tGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGWrlGW~igp~~L~  264 (420)
T KOG0257|consen  185 TGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGWRLGWAIGPKHLY  264 (420)
T ss_pred             cCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeeeeeeeeechHHhh
Confidence            999988   88999999999999999999864    21  111  1233456788999999998777  99999955444


Q ss_pred             ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-------h-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-------E-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-------~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                      ....+....      +.. +.+.+...|..+|+.....       + ...+.+.++++++.+.+.|.+ + ++.+.++..
T Consensus       265 ~~~~~vh~~------~~~-~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~-l-g~~v~~p~g  335 (420)
T KOG0257|consen  265 SALFPVHQN------FVF-TCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEE-L-GLKVTGPEG  335 (420)
T ss_pred             hhHHHHhhc------ccc-ccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CCccccCCC
Confidence            444433321      222 2333333334344443331       2 344888999999999999999 5 898887543

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.95  E-value=3.7e-25  Score=220.21  Aligned_cols=320  Identities=16%  Similarity=0.128  Sum_probs=222.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      +.++.+.+++.+.+... +...+ .+....+..+...++++++++++|.+ +.++++ +|++++..++.++.    ++|+
T Consensus        47 ~~~~~~~~a~~~~~~~~-~~~~~-~~~~~~g~~~l~~~l~~~l~~~~g~~-~~i~~~-sG~~a~~~a~~~~~----~~gd  118 (385)
T TIGR01825        47 ADHPRLKEAAAQAIQQY-GVGAG-AVRTIAGTLRLHEELEEKLAKFKKTE-AALVFQ-SGFNTNQGVLSALL----RKGD  118 (385)
T ss_pred             CCCHHHHHHHHHHHHHc-CCCCC-ccCcccCCcHHHHHHHHHHHHHhCCC-cEEEEC-cHHHHHHHHHHHhC----CCCC
Confidence            47889999999987642 11110 11111223468889999999999964 345555 55788888888887    8999


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHHHH
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQICK  223 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l~~  223 (457)
                      .|+++.+.|+++..++...   |.++..++     .+|++++++.++    +++++|++++++|++|.+.|+++|.++|+
T Consensus       119 ~vi~~~~~~~~~~~~~~~~---g~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~~~~i~~l~~  190 (385)
T TIGR01825       119 IVLSDELNHASIIDGLRLT---KATKKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAPLPEIVELAE  190 (385)
T ss_pred             EEEEEccccHHHHHHHHhc---CCceEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccCHHHHHHHHH
Confidence            9999999999988766554   77776654     368888888765    36889999999999999999999999999


Q ss_pred             hcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccC
Q 040741          224 EFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSG  294 (457)
Q Consensus       224 ~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (457)
                      +||+++|+|++|+.+..+         +++. .+.|+++.|++|.+|..| |+++.+++..+.+......+     ...+
T Consensus       191 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~s~sK~~~~~g-G~~~~~~~~~~~~~~~~~~~-----~~~~  263 (385)
T TIGR01825       191 RYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE-DKVDIQVGTLSKAIGVVG-GYAAGHKELIEYLKNRARPF-----LFST  263 (385)
T ss_pred             HhCCEEEEECcccccCcCCCCCccHhhcCCC-cCCcEEEEeccHHhhcCC-CEEecCHHHHHHHHHhCccc-----cccC
Confidence            999999999999765432         2222 467899999999888776 88888776555543221110     1112


Q ss_pred             CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--c
Q 040741          295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--K  371 (457)
Q Consensus       295 t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~  371 (457)
                      ..++..++++.++++...+. .+..++..++++++.+.|.+ + ++.+..+.    .+.+.+.+.. .+..++...|  +
T Consensus       264 ~~~~~~~~a~~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~  336 (385)
T TIGR01825       264 AQPPAVVAALAAAVDELQRS-PELMERLWDNTRFFKAGLGK-L-GYDTGGSE----TPITPVVIGDEKAAQEFSRRLFDE  336 (385)
T ss_pred             CCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCCCCCCC----CCEEEEEECCHHHHHHHHHHHHHC
Confidence            34556666777777665432 35677778889999999988 4 66655432    1233333331 1234565555  5


Q ss_pred             CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          372 EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       372 ~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||.+.++.+...                ..+..+||++++..+++||+++++++|+++++++
T Consensus       337 gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~~  382 (385)
T TIGR01825       337 GIFAQSIVFPTV----------------PRGTARIRNIPTAEHTKDDLDQALDAYEKVGKEL  382 (385)
T ss_pred             CcEEcccCCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHHHHHHh
Confidence            787754322110                1223689999999999999999999999988654

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.95  E-value=7.6e-26  Score=222.39  Aligned_cols=313  Identities=19%  Similarity=0.170  Sum_probs=215.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      +...++++.+++++|.+  ++++++|||+|+++++.++..   ++|++|+++.++|.++..++...   |+++++++++.
T Consensus        18 ~~~~~~~~~la~~~~~~--~~~~~~sgt~al~~~l~~l~~---~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~   89 (352)
T cd00616          18 PKVREFEKAFAEYLGVK--YAVAVSSGTAALHLALRALGI---GPGDEVIVPSFTFVATANAILLL---GATPVFVDIDP   89 (352)
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC---CCCCEEEeCCcchHHHHHHHHHc---CCeEEEEecCC
Confidence            57889999999999974  589999999999999998842   78999999999999998877655   99999999986


Q ss_pred             -CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC-CCcccEEEeccc-
Q 040741          181 -DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE-KWNVSLMSLSGH-  257 (457)
Q Consensus       181 -~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~-~~~~Di~~~s~~-  257 (457)
                       ++.+|++++++++++++++|++++   ++|...|+++|.++|+++|+++|+|++|++|....+.. ....|+.++|++ 
T Consensus        90 ~~~~~d~~~l~~~i~~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~~~d~~~~S~~~  166 (352)
T cd00616          90 DTYNIDPELIEAAITPRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGTFGDAGAFSFHP  166 (352)
T ss_pred             CcCCcCHHHHHHhcCcCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEcccCcceeEEcCCC
Confidence             688999999999999999998865   58999999999999999999999999999887643210 112477777765 


Q ss_pred             -cccCCCCceEEEEec-CCCccccccccCCccccc--cccCCCCh-hHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHH
Q 040741          258 -KIYGPKGVGALYMRR-RPRIRVEPLINGGGQERG--IRSGTLPT-PLIVGFGSACEI-AKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       258 -K~~g~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~t~~~-~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~  331 (457)
                       |+++.+..|+++.++ +..+++.+...++.....  +...+... ..+..+.+++.. ..+.+++..++.+++++++++
T Consensus       167 ~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~~~~  246 (352)
T cd00616         167 TKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQLEKLDEIIARRREIAERYKE  246 (352)
T ss_pred             CCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             977533347777764 444444443322211100  00001000 001111112211 123467888888999999999


Q ss_pred             HHhhcCCCeEEeCCCCC--cccceEEEEEc---cccchHHHhcc--cCeEecccCccCCCCCChhHHH----H--HcCCC
Q 040741          332 GIKEKLDGVVVNGSMER--RYIGNLNLSFA---YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVL----R--ALGVD  398 (457)
Q Consensus       332 ~l~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l----~--~~g~~  398 (457)
                      .|.+ ++++.++.++..  ..+..+.+.++   +.+..++...|  +||.  .+..|.+....+.+..    .  .+...
T Consensus       247 ~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a  323 (352)
T cd00616         247 LLAD-LPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIE--TRVHYPPLHHQPPYKKLLGYPPGDLPNA  323 (352)
T ss_pred             HhcC-CCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCC--eeeecCccccCHhhhhccCCCcCCChHH
Confidence            9999 899988765432  23445555665   45667888877  4553  3455554333321110    0  00001


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .....+.||+++..++|++||++++++|+
T Consensus       324 ~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         324 EDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             HHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence            11234799999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.95  E-value=1.4e-25  Score=221.74  Aligned_cols=334  Identities=19%  Similarity=0.182  Sum_probs=231.2

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK  146 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g  146 (457)
                      .++++..+++.+.+.+.+-.       .    .+...++|+.+++++|.+  ++++++|||+|+.+++.++ .    ++|
T Consensus        11 ~~~~~e~~~~~~~l~~~~~~-------~----g~~~~~le~~la~~~g~~--~~v~~~sgt~al~lal~al~~----~~G   73 (379)
T PRK11658         11 AMGDEELAAVKEVLRSGWIT-------T----GPKNQALEQAFCQLTGNQ--HAIAVSSATAGMHITLMALGI----GPG   73 (379)
T ss_pred             CCCHHHHHHHHHHHHcCCcc-------C----CHhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHcCC----CCC
Confidence            35677788888887642211       1    156889999999999986  4899999999999999988 5    799


Q ss_pred             CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741          147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF  225 (457)
Q Consensus       147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~  225 (457)
                      |+||++.++|.++..++...   |++++.++++.+ +.+|+++++++++++|++|+..+   ++|...|+++|.++|+++
T Consensus        74 d~Viv~~~~~~~~~~~~~~~---G~~~v~vd~~~~~~~~d~~~l~~~i~~~tkav~~~~---~~G~~~d~~~i~~~a~~~  147 (379)
T PRK11658         74 DEVITPSLTWVSTLNMIVLL---GATPVMVDVDRDTLMVTPEAIEAAITPRTKAIIPVH---YAGAPADLDAIRAIGERY  147 (379)
T ss_pred             CEEEECCCcHHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcccCCeEEEEeC---CCCCcCCHHHHHHHHHHc
Confidence            99999999999998777655   999999999854 46899999999999999887444   589999999999999999


Q ss_pred             CCcEEEehhhhcCCCcc--cCCCCcccEEEecccc-ccCCCCceEEEEe-cCCCccccccccCCcccc------------
Q 040741          226 KIPFHTDAAQALGKIPV--DVEKWNVSLMSLSGHK-IYGPKGVGALYMR-RRPRIRVEPLINGGGQER------------  289 (457)
Q Consensus       226 ~v~li~D~a~~~g~~~~--~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~------------  289 (457)
                      |+++|+|++|++|....  .+...+.++++++.+| +.++.| |+++.+ ++..++++....++....            
T Consensus       148 gi~vi~D~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~  226 (379)
T PRK11658        148 GIPVIEDAAHAVGTYYKGRHIGARGTAIFSFHAIKNITCAEG-GLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQ  226 (379)
T ss_pred             CCeEEEECCCccCCeECCeecCCCCCEEEeCCCCCcCcccCc-eEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCc
Confidence            99999999999887643  2445566888888889 444554 777765 345555554433221100            


Q ss_pred             --ccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cccceEEEEEc----c
Q 040741          290 --GIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--RYIGNLNLSFA----Y  360 (457)
Q Consensus       290 --~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~----~  360 (457)
                        .+..|+..  -+..+.+|+.+.+. .++++.++.+++++++.+.|.+ ++...+..+...  .......+.+.    +
T Consensus       227 ~~~~~~G~n~--~~~~l~AAl~~~ql~~l~~~~~~r~~~a~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (379)
T PRK11658        227 AEVLTPGYKY--NLADINAAIALVQLAKLEALNARRREIAARYLQALAD-LPFQPLSLPAWPHQHAWHLFIIRVDEERCG  303 (379)
T ss_pred             ceeecccccc--CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCcCCCCCCceeEEEEEEEECCcccc
Confidence              00112110  12344555555543 5889999999999999999988 764433332211  11223333442    2


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHH----HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLR----ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~----~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+.+++...|  +||.+  +..|.+....|-|.-.    .+...+....+.|.+.+....++||++++++.|++++
T Consensus       304 ~~r~~~~~~L~~~gI~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  377 (379)
T PRK11658        304 ISRDALMEALKERGIGT--GLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIA  377 (379)
T ss_pred             CCHHHHHHHHHHCCCCC--cccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHH
Confidence            3456777777  46553  3444444444432110    1112223346788899898899999999999999875

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.95  E-value=4.1e-26  Score=211.53  Aligned_cols=322  Identities=20%  Similarity=0.240  Sum_probs=221.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      ++|..+..+...|+++++|.+.-..         ....|+.++...++++.+++++|.  ..++|+++||+||.+++.++
T Consensus         2 ~~f~SDn~~g~~~~m~eam~~a~~~---------~~~~YG~D~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~   70 (342)
T COG2008           2 IDFRSDNVAGPTPEMREALAAANAV---------GDDVYGEDPTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAH   70 (342)
T ss_pred             CccccCccCCCCHHHHHHHHhcccc---------CCCCCCCCHHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHh
Confidence            5677777778889999999987531         122445558999999999999998  44999999999999999999


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC------ceEEEEeccccccccc
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD------TGLISVMAVNNEIGVI  212 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~------t~li~i~~~~~~~G~~  212 (457)
                      +    +|+..||+.+..|....++.-.....+.....+....+|.+++++|++.|+++      +.+++.++.++..|.+
T Consensus        71 ~----~~~~~vi~~~~aHi~~~E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtV  146 (342)
T COG2008          71 C----QPGESVICHETAHIYTDECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTV  146 (342)
T ss_pred             c----CCCCeEEEeccccceecccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCcee
Confidence            9    89999999999999998864433233444545554578999999999988642      5677777777788999


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCC---CcccCCC--CcccEEEeccccccCCCCceEEEEecCCCcccccc--c
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGK---IPVDVEK--WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPL--I  282 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~~~~--~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~--~  282 (457)
                      +|   |++|.++||++|+.||+|+|.-+.+   ...+...  .++|+++++++|.+|.++..+++++++..++....  +
T Consensus       147 y~l~el~~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~  226 (342)
T COG2008         147 YPLDELEAISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKR  226 (342)
T ss_pred             cCHHHHHHHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHH
Confidence            99   4567788999999999999975322   1122222  37999999999977766546777776665554322  3


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      .|++.         .-..+.++ ..+.++++. +.....+.++++++|.+.|.+ .+|+.+..+++   .+++++.++..
T Consensus       227 ~Ggl~---------~k~r~laA-~~~~~l~~~~~~~~~~Han~mA~~La~~~~~-~~G~~~~~~~~---tN~vf~~l~~~  292 (342)
T COG2008         227 AGGLM---------RKARFLAA-QGLYALEDDVWRLAADHANAMAARLAEGLEA-KPGVKLAFPVE---TNMVFVRLPES  292 (342)
T ss_pred             hcccH---------hhhhHHHH-HHHHHHhccHHHHHHHHHHHHHHHHHHhhhh-cCCceeccCCc---ccEEEEECChH
Confidence            33322         11112222 123334444 333444455669999999997 78999987533   56666666532


Q ss_pred             cchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCC-CeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAH-TSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       362 ~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~-~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ..+.+.  ..+.....|..-                   ..+ ..+||.+++.+++||||.++..++.++
T Consensus       293 ~i~~l~--~~~~~~~~~~~~-------------------~~~~~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         293 AIEALR--LAGALFYRGVLI-------------------GAHGEIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             HHHHHH--hhchhheeeeec-------------------cCCCceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            111111  122222111100                   011 379999999999999999999988764

>PRK09148 aminotransferase; Validated

Probab=99.95  E-value=2.2e-25  Score=222.56  Aligned_cols=335  Identities=15%  Similarity=0.101  Sum_probs=226.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. ++++.+.+++.+.+...    .  ...|+  ......++++.+++++    |  ++++ ++++|+|+
T Consensus        30 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~----~--~~~Y~--~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~  101 (405)
T PRK09148         30 ADIIDLGMGNPDLPTPQHIVDKLCETAQDP----R--THRYS--ASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGS  101 (405)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHcCc----c--cCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCCh
Confidence            455777776665 45788888887765321    1  01111  1123445666666655    5  4566 79999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC--CCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG--IVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~--~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      ++++.+++.+++    ++||.|++..++|+.+...+...   |.+++.++.+.++  ..+++++.+...++++++++++|
T Consensus       102 ~~al~~~~~~l~----~~gd~Vl~~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~~l~~~~~~~~~~~~~v~l~~P  174 (405)
T PRK09148        102 KEGFANMAQAIT----APGDVILCPNPSYPIHAFGFIMA---GGVIRSVPAEPDEEFFPALERAVRHSIPKPIALIVNYP  174 (405)
T ss_pred             HHHHHHHHHHhc----CCCCEEEEcCCCCcccHHHHHhc---CCEEEEEeCCCCCCCccCHHHHHhhccccceEEEEeCC
Confidence            999999999998    89999999999999988777665   9999999986443  23444444444578899999999


Q ss_pred             ccccccccCh---HHHHHHHHhcCCcEEEehhhhcCC---Ccc-c---CCC-CcccEEEeccccccCCCC--ceEEEEec
Q 040741          206 NNEIGVIQPM---EEIGQICKEFKIPFHTDAAQALGK---IPV-D---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       206 ~~~~G~~~~l---~~i~~l~~~~~v~li~D~a~~~g~---~~~-~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +||||.+.+.   ++|.++|++|+++|++|++|+...   .+. .   +.. .+..+++.|++|.+|.+|  +||+++++
T Consensus       175 ~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR~G~~v~~~  254 (405)
T PRK09148        175 SNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWRMGFAVGNE  254 (405)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchheeeeeCCH
Confidence            9999999995   678889999999999999997321   111 1   111 133467899999888666  99999887


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++......       ...+.+.+...++..+++...+.+++.+++++++++++.+.|++ . ++.+..+ ..  +.
T Consensus       255 ~~i~~l~~~~~~-------~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-~~~~~~p-~~--g~  322 (405)
T PRK09148        255 RLIAALTRVKSY-------LDYGAFTPIQVAATAALNGPQDCIAEMRELYKKRRDVLVESFGR-A-GWDIPPP-AA--SM  322 (405)
T ss_pred             HHHHHHHHHHHH-------hccCCChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCccCCC-Ce--eE
Confidence            766655443211       11133344444444444322334677888889999999999988 4 5544322 11  33


Q ss_pred             eEEEEEccc----cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          353 NLNLSFAYV----EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       353 ~~~~~~~~~----~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      ++.+.++..    +..++...+   +||.+.+|..+..                 ...+++||+++  .+.++++.++++
T Consensus       323 f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~-----------------~~~~~~Ri~~~--~~~~~l~~al~~  383 (405)
T PRK09148        323 FAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGE-----------------HGDGYVRIALV--ENEQRIRQAARN  383 (405)
T ss_pred             EEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEec--CCHHHHHHHHHH
Confidence            444444421    234555543   5999999864321                 11379999997  468999999999


Q ss_pred             HHHHHHHHHhc
Q 040741          426 TVKQVEKLREM  436 (457)
Q Consensus       426 l~~~~~~~~~~  436 (457)
                      |.++++++.+.
T Consensus       384 l~~~l~~~~~~  394 (405)
T PRK09148        384 IKRFLSSADET  394 (405)
T ss_pred             HHHHHHHHHHH
Confidence            99999877653

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.95  E-value=1e-25  Score=226.22  Aligned_cols=342  Identities=18%  Similarity=0.211  Sum_probs=230.9

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      .+.+.|.. +.+++++++++++..++...+  +++.+ .+..+....+..++ +++.+++++|+++.+++++ +||.|+.
T Consensus        25 ~~~~~l~~-~~n~~~~~v~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~~la~~~g~~~~~i~~~-sgt~al~  101 (416)
T PRK00011         25 EEHIELIA-SENFVSPAVMEAQGSVLTNKYAEGYPGK-RYYGGCEYVDVVEQLAIDRAKELFGAEYANVQPH-SGSQANA  101 (416)
T ss_pred             hcCeeeec-ccCcCCHHHHHHHhchhhcccccCCCCc-cccccchHHHHHHHHHHHHHHHHhCCCceeeecC-CchHHHH
Confidence            34455554 455689999999988875544  34443 23334334445554 6779999999987656554 5788999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH--HHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR--HLQQEGFEITYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVNNE  208 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~--~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~~~  208 (457)
                      +++.++.    ++||+|+++.++|.++.....  .+...|++++.++++ .++.+|++++++++++ ++++|++++.  .
T Consensus       102 ~~l~~l~----~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~k~v~~~~~--~  175 (416)
T PRK00011        102 AVYFALL----KPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALEHKPKLIIAGAS--A  175 (416)
T ss_pred             HHHHHhc----CCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHhcCCCEEEECCC--c
Confidence            9999987    899999999999986543211  122346788888887 4578999999999975 7888887643  3


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccccc-CCCCceEEEEe-cCCCcccccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMR-RRPRIRVEPL  281 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~-~~~~~~~~~~  281 (457)
                      +|...|+++|.++|+++|+++|+|++|+.|..     +..+.  ++|++++|+||++ |+.| |+++.+ ++..+++...
T Consensus       176 ~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~--~~di~~~S~~K~l~g~~g-g~i~~~~~~~~~~l~~~  252 (416)
T PRK00011        176 YSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVP--HADVVTTTTHKTLRGPRG-GLILTNDEELAKKINSA  252 (416)
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCC--CCcEEEecCCcCCCCCCc-eEEEeCCHHHHHHHHHH
Confidence            57778999999999999999999999987654     22333  6799999999954 6775 788875 3554444332


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ...+      ..+++....++++..++.... +++++..++.+++++++++.|.+ + ++.+...  ....+.+.+.+..
T Consensus       253 ~~~~------~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~--~~~~~~~~i~~~~  322 (416)
T PRK00011        253 VFPG------IQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAE-R-GFRVVSG--GTDNHLVLVDLRS  322 (416)
T ss_pred             hCcc------ccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeeeec--CCCCeEEEEeCcc
Confidence            2211      123444555566555554433 35788899999999999999998 4 7776531  1123444455532


Q ss_pred             c--cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHHHHHH
Q 040741          361 V--EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       361 ~--~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~edid~~~~~l~~~~~~  432 (457)
                      .  +...+...|  +||.+..+.....  .           .+......+|++...    .++.+|+++++++|+++++.
T Consensus       323 ~~~~~~~~~~~L~~~GI~v~~~~~p~~--~-----------~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~  389 (416)
T PRK00011        323 KGLTGKEAEAALEEANITVNKNAVPFD--P-----------RSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN  389 (416)
T ss_pred             cCCCHHHHHHHHHHcCcEEccCcCCCC--C-----------CCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence            2  345566666  5888764431110  0           011122568986533    45799999999999998775

>PLN02263 serine decarboxylase

Probab=99.95  E-value=1.3e-24  Score=214.12  Aligned_cols=333  Identities=14%  Similarity=0.114  Sum_probs=240.6

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK--EIIFTSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~--~i~~t~g~T~a~~~  133 (457)
                      +...+|+++.+.-.+...+.-+..+..+..|+|... ..|+..+.+.-.++.+++++++|.+++  ..++|+|||+||..
T Consensus        89 ~~~~~~gYp~n~~~d~s~l~~~l~~~~nN~Gdp~~~-s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~  167 (470)
T PLN02263         89 RTKHHLGYPYNLDFDYGALGQLQHFSINNLGDPFIE-SNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLH  167 (470)
T ss_pred             cccceeCCCCcccCChhhHHHHHHhhccCCCCcccc-CCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHH
Confidence            445689887777776667777777776667776652 223335667888899999999999764  38999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC---ceEEEEeccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD---TGLISVMAVNNEIG  210 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~---t~li~i~~~~~~~G  210 (457)
                      ++.+.+..+  ++..++++...|.|+.++++++   |++++.||.+.++.+|+++|+++|.++   +.+|+.+...+++|
T Consensus       168 Al~aARe~~--~~~vvy~S~~aH~Sv~KAa~ll---gi~~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~G  242 (470)
T PLN02263        168 GILVGREVF--PDGILYASRESHYSVFKAARMY---RMECVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKG  242 (470)
T ss_pred             HHHHHHhhc--CCcEEEEcCCccHHHHHHHHhc---CCcceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCc
Confidence            999988642  3457889999999999999998   999999999999999999999999754   46777888999999


Q ss_pred             cccChHHHHHHHHhcCC-----cEEEehhhhcCCCc-------ccCCCCcccEEEeccccc-cCCCCceEEEEecCCCcc
Q 040741          211 VIQPMEEIGQICKEFKI-----PFHTDAAQALGKIP-------VDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIR  277 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v-----~li~D~a~~~g~~~-------~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~  277 (457)
                      .+.|+++|.++|+++|+     ++|+|+|++....|       +++.. .+|.+++++||+ +.|.++|+++++++....
T Consensus       243 AiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~-~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~  321 (470)
T PLN02263        243 AVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKK-PIGSVSVSGHKFVGCPMPCGVQITRMEHINV  321 (470)
T ss_pred             CCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCc-CccEEEECCccccCCCcCEEEEEEehhhHhh
Confidence            99999999999999997     99999999765443       23322 389999999995 558899999999764422


Q ss_pred             cc---ccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          278 VE---PLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       278 ~~---~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      +.   .++....  . --.|+-+....+.+-.+++. ..+++.++.++..++++++.+.|++ . ++.+..++.   .+.
T Consensus       322 ~~~~~~Yl~~~d--~-ti~gSR~g~~al~lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~-~-g~~~~~~p~---s~~  393 (470)
T PLN02263        322 LSSNVEYLASRD--A-TIMGSRNGHAPIFLWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLRE-A-GISAMLNEL---SST  393 (470)
T ss_pred             hccChHhhCCCC--C-CcCCCCCcHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHh-C-CCeEEeCCC---ceE
Confidence            21   1111110  0 01122222222333334443 3457999999999999999999999 5 665555432   233


Q ss_pred             EEEEEccccchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                        +.|.......   ..+|-.+..                        ..+.+++++...++++.+|.+++.|++..+.
T Consensus       394 --V~f~~p~~~~---~~~gW~L~~------------------------~~~~~Hivvmphv~~~~id~fi~DL~~~~~~  443 (470)
T PLN02263        394 --VVFERPKDEE---FVRRWQLAC------------------------QGNIAHVVVMPSVTIEKLDYFLKELVEKRST  443 (470)
T ss_pred             --EEEecCchHH---hhcceEEcc------------------------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHhh
Confidence              3343222111   113433321                        0157999999988899999999999988764

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=1.9e-25  Score=222.63  Aligned_cols=329  Identities=14%  Similarity=0.130  Sum_probs=224.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh--------CCCCC-cEEEeC
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI--------GASPK-EIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~--------g~~~~-~i~~t~  125 (457)
                      .+.+.|+.+.+. .+++.+.+++.+.+.....++..          ....++++.+++++        |++++ ++++|+
T Consensus        28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~----------~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~   97 (393)
T TIGR03538        28 KPPIALSIGEPKHPTPAFVLEALRENLHGLSTYPTT----------KGLPELRQAIARWLERRFDLPTGVDPERHVLPVN   97 (393)
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCCC----------CCCHHHHHHHHHHHHHhhCCcccCCCCceEEECC
Confidence            456777776666 56788899988876433222211          12445666666665        35664 799999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCE--EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEE
Q 040741          126 GATESNNVSIKGVMHFYKDKKRH--VITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~--vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~  201 (457)
                      |+++++.+++.+++    ++|+.  |+++.+.|+.+...++..   |.+++.++++.+  ..+|++++++++.+++++|+
T Consensus        98 Ga~~al~~~~~~l~----~~gd~~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~  170 (393)
T TIGR03538        98 GTREALFAFAQAVI----NPGQAPLVVMPNPFYQIYEGAALLA---GAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLF  170 (393)
T ss_pred             CcHHHHHHHHHHHc----CCCCcceEEecCCCCcchHHHHHhc---CCeEEEeeccccCCCCCCHHHHHHHHhhcceEEE
Confidence            99999999999988    78886  999999999888776655   999999998633  46799999999888899999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-----ccc----CC-----CCcccEEEeccccccCCCC
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-----PVD----VE-----KWNVSLMSLSGHKIYGPKG  264 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~----~~-----~~~~Di~~~s~~K~~g~~G  264 (457)
                      +++++||||.+.+   +++|+++|++|+++|++|+++.....     +..    ..     ....-+++.|++|.|+.+|
T Consensus       171 l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~G  250 (393)
T TIGR03538       171 VCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPG  250 (393)
T ss_pred             EeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCcc
Confidence            9999999999998   77888999999999999999973211     111    00     1123478899999776555


Q ss_pred             --ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          265 --VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       265 --~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                        +|+++.+++.++++.....       ....+.+.....++..++.. .+.+++..+++++.++.+.+.|.+ .  +.+
T Consensus       251 lRvG~~i~~~~l~~~~~~~~~-------~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~--~~~  319 (393)
T TIGR03538       251 LRSGFVAGDAEILKAFLRYRT-------YHGCAMPIPTQLASIAAWND-EQHVRENRALYREKFAAVLEILGQ-V--LDL  319 (393)
T ss_pred             cceEEEecCHHHHHHHHHHHH-------hhccCcCHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHh-h--Ccc
Confidence              9999988766555543221       01113343444433334321 234677788888888889888887 3  222


Q ss_pred             eCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          343 NGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .. +..  +.++.+.++ .+..++...+   +||.+.+|..+.....           ......+++||+++.  +++++
T Consensus       320 ~~-p~g--g~f~~~~~~-~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-----------~~~~~~~~~Ris~~~--~~~~l  382 (393)
T TIGR03538       320 EL-PDA--GFYLWPKVP-GDDEAFARALYEEENVTVLPGRFLAREAE-----------GVNPGEGRVRIALVA--PLEEC  382 (393)
T ss_pred             cC-CCe--eEEEEEECC-CCHHHHHHHHHHHCCEEEeCCcccccccc-----------CCCCCCCEEEEEecC--CHHHH
Confidence            22 111  334444444 3456666554   5999999986532100           001223799999986  57899


Q ss_pred             HHHHHHHHHH
Q 040741          420 DRAIELTVKQ  429 (457)
Q Consensus       420 d~~~~~l~~~  429 (457)
                      +.++++|.+.
T Consensus       383 ~~~l~~l~~~  392 (393)
T TIGR03538       383 VEAAERIRSF  392 (393)
T ss_pred             HHHHHHHHHh
Confidence            9999888764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.95  E-value=1e-25  Score=227.12  Aligned_cols=290  Identities=14%  Similarity=0.149  Sum_probs=210.4

Q ss_pred             HHHHHHHHHHHhCC---CCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741          103 VETARSQIADLIGA---SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG  179 (457)
Q Consensus       103 ~~~~~~~la~~~g~---~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~  179 (457)
                      ..++++.++++++.   ++++|++|+|+++++.+++.+++    ++||.|++..+.|+.+...++..   |++++.++.+
T Consensus       123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~----~pgd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~  195 (431)
T PRK15481        123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHL----LPGDSVAVEDPCFLSSINMLRYA---GFSASPVSVD  195 (431)
T ss_pred             CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCeEEeeccC
Confidence            45677788887762   24589999999999999999998    89999999999999998887766   9999999987


Q ss_pred             CCCCCCHHHHHHhcCCCceEEEEe-ccccccccccChH---HHHHHHHhc-CCcEEEehhhhcCCC-c-cc-CC-CCccc
Q 040741          180 ADGIVNLDELRAAIRPDTGLISVM-AVNNEIGVIQPME---EIGQICKEF-KIPFHTDAAQALGKI-P-VD-VE-KWNVS  250 (457)
Q Consensus       180 ~~~~~d~~~le~~i~~~t~li~i~-~~~~~~G~~~~l~---~i~~l~~~~-~v~li~D~a~~~g~~-~-~~-~~-~~~~D  250 (457)
                      .++ +|++++++++++++++++++ ++|||||.+.+.+   +|.++|+++ +++|++|++++--.. + .. +. ..+..
T Consensus       196 ~~g-~~~~~l~~~~~~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~v  274 (431)
T PRK15481        196 AEG-MQPEKLERALAQGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSSPYHSVIPQTTQRW  274 (431)
T ss_pred             CCC-CCHHHHHHHHhcCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccCCCCCCCcCCCCCE
Confidence            655 89999999998888887776 9999999999965   899999999 999999999873211 0 11 11 12345


Q ss_pred             EEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALH  326 (457)
Q Consensus       251 i~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~  326 (457)
                      +++.||+|.|| +|  +||++.+++..+++.......       ....+.....++..+++..  .+.+.+..+.+++.+
T Consensus       275 i~~~SfSK~~~-~GlRiG~~i~~~~~~~~~~~~~~~~-------~~~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~~r  346 (431)
T PRK15481        275 ALIRSVSKALG-PDLRLAFVASDSATSARLRLRLNSG-------TQWVSHLLQDLVYACLTDPEYQARLAQARLFYAQRR  346 (431)
T ss_pred             EEEeeeccccC-CCceeEEEeCCHHHHHHHHHHHhcc-------ccCCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            88899999888 45  999998876665554322111       1134555555555555432  223677888899999


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                      +.+.+.|.+ . ++.+..+ ..  +.++.+.++. +..++...+  +||.+.+|..+..              .  ...+
T Consensus       347 ~~~~~~L~~-~-~~~~~~p-~g--g~f~~~~l~~-~~~~~~~~l~~~gV~v~pg~~f~~--------------~--~~~~  404 (431)
T PRK15481        347 QKLARALQQ-Y-GIAIPSP-GD--GLNLWLPLDT-DSQATALTLAKSGWLVREGEAFGV--------------S--APSH  404 (431)
T ss_pred             HHHHHHHHH-c-CCccccC-CC--eEEEEEECCC-CHHHHHHHHHHCCcEEecCCcccc--------------C--CCCC
Confidence            999999988 4 5544222 11  3334444432 345565555  7999999875532              1  1126


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++||+++.. +.++++.++++|.++++
T Consensus       405 ~iRis~~~~-~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        405 GLRITLSTL-NDAEINRLAADLHQALN  430 (431)
T ss_pred             eEEEEcCCC-ChHHHHHHHHHHHHHhc
Confidence            899999874 58999999999998875

>PRK03321 putative aminotransferase; Provisional

Probab=99.95  E-value=1.5e-25  Score=220.19  Aligned_cols=314  Identities=17%  Similarity=0.149  Sum_probs=225.2

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      +.+.|+.+.+. ++++.+.+++.+.......+|.           ....++++.++++++++++++++++|+++++..++
T Consensus        23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----------~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~   91 (352)
T PRK03321         23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPD-----------MGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLV   91 (352)
T ss_pred             cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHH
Confidence            56888888777 4778999999988754322221           24678999999999998889999999999999988


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      ..+.    ++|++|+++.+.|..+...++..   |.+++.++.+.++.+|+++++++++++++++++++++||+|.+.|.
T Consensus        92 ~~~~----~~gd~Vli~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~  164 (352)
T PRK03321         92 QATA----GPGDEVIFAWRSFEAYPILVQVA---GATPVQVPLTPDHTHDLDAMAAAITDRTRLIFVCNPNNPTGTVVTP  164 (352)
T ss_pred             HHhc----CCCCEEEeCCCCHHHHHHHHHHc---CCEEEEccCCCCCCCCHHHHHHhhccCCCEEEEeCCCCCcCCCcCH
Confidence            8877    89999999888877665554444   9999999988667889999999999899999999999999999999


Q ss_pred             HHHHHHHHh--cCCcEEEehhhhcCCC----c--cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccC
Q 040741          216 EEIGQICKE--FKIPFHTDAAQALGKI----P--VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       216 ~~i~~l~~~--~~v~li~D~a~~~g~~----~--~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~  284 (457)
                      +++.++|+.  +++++++|+++.....    +  +. ....+.-+++.|++|.+|.+|  +|+++++++.++.+..... 
T Consensus       165 ~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~v~~~~~~~~~~~~~~-  243 (352)
T PRK03321        165 AELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGYAVGHPEVIAALRKVAV-  243 (352)
T ss_pred             HHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhhhcCCHHHHHHHHHhcC-
Confidence            999999987  5999999999973211    1  11 111123467779999888666  8999998776666554321 


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                              ..+.+.....++.+++... +.+.+..++..+.++++.+.|.+ . ++.+.. +.   +.++.+.+. .+..
T Consensus       244 --------~~~~s~~~q~~a~~~l~~~-~~~~~~~~~~~~~r~~~~~~L~~-~-~~~~~~-~~---g~~i~i~l~-~~~~  307 (352)
T PRK03321        244 --------PFSVNSLAQAAAIASLAAE-DELLERVDAVVAERDRVRAALRA-A-GWTVPP-SQ---ANFVWLPLG-ERTA  307 (352)
T ss_pred             --------CCCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCccCC-CC---CCEEEEeCC-CCHH
Confidence                    1244555555444555422 23344445555566778888887 4 554432 11   333444443 2345


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++...|  +||.+.+   |                    ....|||+++   +.++.++++++++++++
T Consensus       308 ~~~~~l~~~gI~v~~---~--------------------~~~~iRi~~~---~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        308 DFAAAAAEAGVVVRP---F--------------------AGEGVRVTIG---APEENDAFLRAARAWRA  350 (352)
T ss_pred             HHHHHHHHCCEEEEc---c--------------------CCCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence            566665  6887753   1                    1146999986   58999999999998754

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=1.8e-25  Score=219.55  Aligned_cols=311  Identities=14%  Similarity=0.108  Sum_probs=221.5

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~  172 (457)
                      .|++...+....+++.+|++.|.  +++++++||++|+.+++.++.    ++||+|+++.+.|.+....+.. ....|++
T Consensus        46 ~Y~R~~npt~~~Le~~lA~leg~--e~ivvt~gg~~Ai~~~l~all----~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi~  119 (388)
T PRK08861         46 DYTRSGNPNRGLLEQTLSELESG--KGAVVTNCGTSALNLWVSALL----GPDDLIVAPHDCYGGTYRLFNTRANKGDFK  119 (388)
T ss_pred             cccCCCCchHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCchHHHHHHHHHHHhcCCeE
Confidence            34555557888999999999996  459999999999999999987    8999999999999876665533 3445788


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++.     .|+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.....+ +.++|++
T Consensus       120 v~~vd~-----~d~e~l~~~i~~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~~pl-~~GaDiv  193 (388)
T PRK08861        120 VQFVDQ-----SDAAALDAALAKKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQKPL-ELGADFV  193 (388)
T ss_pred             EEEECC-----CCHHHHHHhcCcCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccCCCc-ccCCCEE
Confidence            888863     3899999999999999999999999999999999999999999999999999876543222 4589999


Q ss_pred             Eecccccc-CCCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIY-GPKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~-g~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|+||++ |+.+  .|+++.+++ ..+++......       .....++....-+...    .+.+.-++++..+++..
T Consensus       194 v~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~~-------~G~~~~p~~a~l~~rg----l~Tl~lR~~~~~~~a~~  262 (388)
T PRK08861        194 IHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGNC-------IGATGTPFDSYMTLRG----IRTLGARMRVHEESAQQ  262 (388)
T ss_pred             EeecceeccCCCcceeEEEEecHHHHHHHHHHHHhc-------cCCCCChHHHHHHHhc----CCCHHHHHHHHHHHHHH
Confidence            99999954 5544  577776543 22223222211       1123333333322211    22467788888999999


Q ss_pred             HHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCCC
Q 040741          329 LLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SASL  386 (457)
Q Consensus       329 l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~  386 (457)
                      +.+.|++ .|.+. |+-+  ++           ...++++.|.+.+-  ....++..|+  .+++.-|...+    +..+
T Consensus       263 ~a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~  341 (388)
T PRK08861        263 ILAYLQT-QSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAGSFEQLKVFVKALALFSLAESLGGVESLICHPASM  341 (388)
T ss_pred             HHHHHHh-CCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCCCHHHHHHHHhcCCcceEccCCCCCcceeeCCCcc
Confidence            9999998 78763 2221  11           23577888887631  1235556653  55566665433    2222


Q ss_pred             Ch----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          387 EP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       387 ~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      .+    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++++.+.
T Consensus       342 ~h~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dli~Dl~~al~~~~~~  387 (388)
T PRK08861        342 THRAMGEEALAEAGVSQ----QLLRLSVGL----EDAQDLIADLDQAFAKAAEA  387 (388)
T ss_pred             cccccCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHHHhc
Confidence            21    12234567665    899999997    88999999999999887654

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.95  E-value=3.9e-26  Score=225.94  Aligned_cols=310  Identities=14%  Similarity=0.095  Sum_probs=220.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+.+.++++.++++.|.+.  ++++++|++|+.+++.+++    ++||+|+++.+.|.+....+. .+...|+
T Consensus        56 ~~y~r~~~p~~~~le~~lA~l~g~~~--~i~~ssG~~Ai~~~l~all----~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi  129 (398)
T PRK08249         56 HIYSRNTNPTVQAFEEKVRILEGAEA--ATAFSTGMAAISNTLYTFL----KPGDRVVSIKDTYGGTNKIFTEFLPRMGV  129 (398)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCCe--EEEeCChHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHHHhhCCe
Confidence            45566666899999999999999754  7888888999999999887    899999999999988766554 3455699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++.     .|+++++++|+++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.... ....++|+
T Consensus       130 ~v~~vd~-----~d~e~l~~~i~~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~~-~l~~~~Di  203 (398)
T PRK08249        130 DVTLCET-----GDHEQIEAEIAKGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQN-PLALGADL  203 (398)
T ss_pred             EEEEcCC-----CCHHHHHHhcCCCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccCC-chhhCCCE
Confidence            9888764     48999999999999999999999999999999999999999999999999998654322 22357899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++.|++|++|+.|   .|+++.+++..+++......       .....+......+...++    .+..++++..+++..
T Consensus       204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~~-------~g~~~s~~~a~l~l~~l~----tL~~R~~~~~~na~~  272 (398)
T PRK08249        204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYREI-------NGATMDPMSAYLILRGMK----TLKLRVRQQQESAMA  272 (398)
T ss_pred             EeccCceecCCCCCceEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhCcc----hHHHHHHHHHHHHHH
Confidence            9999999776533   47777665554544433221       112344333333323332    356667788889999


Q ss_pred             HHHHHhhcCCCeEEe-CC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCCC
Q 040741          329 LLNGIKEKLDGVVVN-GS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SASL  386 (457)
Q Consensus       329 l~~~l~~~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~  386 (457)
                      +.+.|++ .|.+.-+ -+  +.           ...++++.|.+.+-  ....++..|+  .++++-|...+    +...
T Consensus       273 la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~  351 (398)
T PRK08249        273 LAKYLQT-HPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGMDTVKRLLPKLRYAHRAANLGAVETIYGPARTT  351 (398)
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHhCCcceEccCCCCCCceeeCCccc
Confidence            9999988 7776422 11  11           13577787887531  1235666664  45555565433    2222


Q ss_pred             Ch----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          387 EP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       387 ~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .+    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++.+.
T Consensus       352 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~~  395 (398)
T PRK08249        352 SHVENTLEERAALGIPE----GLVRISVGI----EDTEDLIADLEQAFAHLE  395 (398)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence            11    11233456654    899999996    789999999999988654

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.95  E-value=2.1e-25  Score=218.90  Aligned_cols=306  Identities=15%  Similarity=0.102  Sum_probs=220.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|++...+....+|+.++++.|.+  ++++++||++|+..++.++.    ++||+|+++++.|++....+. .++..|++
T Consensus        43 ~Y~r~gnPt~~~lE~~lA~l~g~~--~~~~~~sG~~Ai~~al~all----~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~  116 (377)
T TIGR01324        43 TYGRRGTLTHFALQDAMCELEGGA--GCYLYPSGLAAVTNSILAFV----KAGDHVLMVDSAYEPTRYFCDIVLKRMGVD  116 (377)
T ss_pred             cccCCCCccHHHHHHHHHHHhCCC--cEEEECcHHHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHHHHhcCcE
Confidence            344444567889999999999975  49999999999999999997    899999999999887765443 34556888


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +.+++.+     +.++++++++++|++|++++++|++|.+.|+++|+++|+++|+++++|++|+.|... ...++++|++
T Consensus       117 v~~~d~~-----~~e~l~~~i~~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~-~pl~~gaDiv  190 (377)
T TIGR01324       117 ITYYDPL-----IGEDIATLIQPNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLF-KPLEHGVDIS  190 (377)
T ss_pred             EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-CccccCceEE
Confidence            8888643     338899999999999999999999999999999999999999999999999988663 3445789999


Q ss_pred             EeccccccC-CCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYG-PKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       253 ~~s~~K~~g-~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +.|++|++| +.+  .|+++.+++..+++.....       ....+.++.....+...++    .+..++++..+++..+
T Consensus       191 v~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~~~-------~~G~~l~p~~a~~~~rgl~----tl~~R~~~~~~~a~~l  259 (377)
T TIGR01324       191 IQAGTKYLVGHSDIMIGTVVANARTWDQLREHSY-------LMGQMVDADDAYTTLRGLR----TLGVRLKQHQESSLAI  259 (377)
T ss_pred             EecCceeccCCCCceEEEEEeCHHHHHHHHHHHH-------HhCCCCCHHHHHHHHhhhh----hHHHHHHHHHHHHHHH
Confidence            999999654 433  5888887654444432211       1112445544443333332    4566788888888899


Q ss_pred             HHHHhhcCCCe-EEeCCC-------------CCcccceEEEEEcccc---chHHHhcc--cCeEecccCccCCCC-----
Q 040741          330 LNGIKEKLDGV-VVNGSM-------------ERRYIGNLNLSFAYVE---GESLLMGL--KEVAVSSGSACTSAS-----  385 (457)
Q Consensus       330 ~~~l~~~~~~~-~~~~~~-------------~~~~~~~~~~~~~~~~---~~~~~~~l--~~i~~~~g~~~~~~~-----  385 (457)
                      .+.|++ .|.+ +++-+.             ....++++.|.+++.+   ...++..|  .+++++-|...+...     
T Consensus       260 a~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~l~~~~~~~slG~~~sl~~~~~~~  338 (377)
T TIGR01324       260 AKWLSE-QPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLTQKQVHAFLDHLQLFGLGYSWGGYESLALCNQPE  338 (377)
T ss_pred             HHHHHh-CCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEeccCCCccceeecCCCC
Confidence            999988 6766 333221             1134677778876422   34566666  367777776544321     


Q ss_pred             CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       386 ~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.+ ......|+.+    +.|||+++.    ||.|.+++.|+++++.
T Consensus       339 ~~~-~~~~~~~~~~----~liR~svGl----E~~~dl~~dl~~al~~  376 (377)
T TIGR01324       339 LGH-RPNIKRNLEG----PLIRVHIGL----ENVDDLKADLKAGFEA  376 (377)
T ss_pred             CCH-HHHHhccCCC----CEEEEEeCC----CCHHHHHHHHHHHHhc
Confidence            222 1223344433    799999997    7888888888888764

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK07777 aminotransferase; Validated

Probab=99.95  E-value=6.1e-25  Score=218.54  Aligned_cols=334  Identities=19%  Similarity=0.162  Sum_probs=224.3

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCChHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PK-EIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~-~i~~t~g~T~a~~  132 (457)
                      +.+.|..+.+. +.++.+.+++.+.+....   .  .|....+..+..+.+.+.+.+..|.+  ++ ++++|+|+|+|+.
T Consensus        25 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~---~--~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~   99 (387)
T PRK07777         25 GAVNLGQGFPDEDGPPEMLEAAQEAIAGGV---N--QYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIA   99 (387)
T ss_pred             CeEEccCCCCCCCCCHHHHHHHHHHHhcCC---C--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHH
Confidence            44666655544 345667777776654311   0  11111111223333333444445653  44 6999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC---CCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD---GIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~---~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +++.++.    ++||+|++..+.|+.+..++...   |.+++.++.+++   +.+|++++++++++++++|++++++|||
T Consensus       100 ~~~~~~~----~~gd~vli~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPt  172 (387)
T PRK07777        100 AAVLGLV----EPGDEVLLIEPYYDSYAAVIAMA---GAHRVPVPLVPDGRGFALDLDALRAAVTPRTRALIVNSPHNPT  172 (387)
T ss_pred             HHHHHhc----CCCCEEEEeCCCchhhHHHHHHC---CCEEEEeecCCccCCCcCCHHHHHHhcCcccEEEEEcCCCCCC
Confidence            9999887    89999999999998887766655   999998888643   4589999999999899999999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCC----C--ccc-CCC-CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGK----I--PVD-VEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~--~~~-~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      |.+.+   +++|.++|++|++++++|++++...    .  ++. ... .+.++++.|++|.||.+|  +|+++++++.++
T Consensus       173 G~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l~~  252 (387)
T PRK07777        173 GTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPLIA  252 (387)
T ss_pred             CccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHHHH
Confidence            99986   7789999999999999999986421    1  111 111 246789999999888556  799998876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++.......       ....+.+...++..++......+++..+.++++++++.+.|.+ . ++.+..+. .  ..++.+
T Consensus       253 ~~~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~-g--~~~~~~  320 (387)
T PRK07777        253 AVRAAKQYL-------TYVGGAPFQPAVAHALDHEDAWVAALRDSLQAKRDRLAAGLAE-A-GFEVHDSA-G--TYFLCA  320 (387)
T ss_pred             HHHHHHhhc-------ccCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-C-CCCccCCC-c--ceEEEe
Confidence            544322110       1122333333444444333344677788899999999999988 4 55554332 1  222333


Q ss_pred             EEc---cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          357 SFA---YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       357 ~~~---~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .++   ..++.++...|   .||.+.+|..+..              ......+++||+++.  ++++++..+++|.++.
T Consensus       321 ~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~--------------~~~~~~~~~Ri~~~~--~~~~l~~~l~~l~~~~  384 (387)
T PRK07777        321 DPRPLGYDDGTEFCRALPERVGVAAIPMSVFYD--------------PADAWNHLVRFAFCK--RDDTLDEAIRRLRALR  384 (387)
T ss_pred             cccccCCCCHHHHHHHHHHhCCEEEeCchHhCC--------------CCcCCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            332   12456777766   4899999875432              111223789999985  6899999999888754

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.95  E-value=1.2e-25  Score=219.93  Aligned_cols=313  Identities=14%  Similarity=0.135  Sum_probs=224.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+....+++.++++-|.+.  +++++||+.|+++++.++.    ++||+|+++...|.+....++ .+++.|+
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~~~--a~~~~SGmaAi~~~~~~ll----~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi  127 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGGAG--CALYPCGAAAVANAILAFV----EQGDHVLMTGTAYEPTQDFCSKILSKLGV  127 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCe--EEEEhHHHHHHHHHHHHHc----CCCCEEEEeCCCcHHHHHHHHHHHHhcCc
Confidence            45566666889999999999998764  8888889999999999987    899999999999988887764 4566799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC--CcEEEehhhhcCCCcccCCCCcc
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK--IPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~--v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      ++.+++..     |.++++++|+++|++|+++++.||+|.+.|+++|+++||+++  +++++|.+++.|.. +++.++++
T Consensus       128 ~v~~vd~~-----d~~~l~~~l~~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-~~pl~~Ga  201 (395)
T PRK08114        128 TTTWFDPL-----IGADIAKLIQPNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-FKALDFGI  201 (395)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-cCHHHcCC
Confidence            99998854     789999999999999999999999999999999999999984  99999999999876 88888999


Q ss_pred             cEEEecccc-ccCCC--CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHK-IYGPK--GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K-~~g~~--G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++.|.|| +.|+.  ++|+++.+++..+++......       .....++....-+...    .+.+.-++++..+++
T Consensus       202 Divv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~~~-------~G~~~~p~~a~l~~rg----l~TL~lR~~~~~~na  270 (395)
T PRK08114        202 DISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENSYL-------MGQMVDADTAYMTSRG----LRTLGVRLRQHEESS  270 (395)
T ss_pred             cEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHHHh-------ccCCCCHHHHHHHHcC----CCcHHHHHHHHHHHH
Confidence            999999999 56654  578777665433333221111       1113333333322111    124678889999999


Q ss_pred             HHHHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc----cchHHHhccc--CeEecccCccCCCCC
Q 040741          327 DRLLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV----EGESLLMGLK--EVAVSSGSACTSASL  386 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~----~~~~~~~~l~--~i~~~~g~~~~~~~~  386 (457)
                      ..+.+.|++ .|.+. |+-+  ++           ...++++.|.+++.    ....++..|+  .++++-|...+....
T Consensus       271 ~~va~~L~~-hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~SlGg~~SLi~~  349 (395)
T PRK08114        271 LKVAEWLAE-HPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAYSWGGFESLILA  349 (395)
T ss_pred             HHHHHHHHc-CCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeecccCCccceecc
Confidence            999999999 78764 3322  11           23577888887631    1234555553  556666665443321


Q ss_pred             ChhHHHHHcCCC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EPSYVLRALGVD--EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~~~~l~~~g~~--~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ..........-.  ....++.||++++.    ||+|.+++.|+++++.+
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~~~  394 (395)
T PRK08114        350 NQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFARI  394 (395)
T ss_pred             CCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            000111111100  01233899999996    78899999999988753

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.95  E-value=7e-25  Score=212.27  Aligned_cols=321  Identities=18%  Similarity=0.201  Sum_probs=247.4

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~t~g~T~a~~~a  134 (457)
                      +.+.|+.+.+. ++|+.+.+++.+......-+|+.           ...++++.++++.| .++++|+.++|+++.+..+
T Consensus        23 ~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l   91 (356)
T COG0079          23 GIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPENVLVGNGSDELIELL   91 (356)
T ss_pred             cceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHH
Confidence            56788887777 56689999998887654444442           57789999999999 7888899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +++++    .+||.|++..++|..+...++..   |++++.++... +..|++.+.+++++++++|++++||||||...+
T Consensus        92 ~~~~~----~~gd~vl~~~Ptf~~Y~~~a~~~---g~~~~~v~~~~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~  163 (356)
T COG0079          92 VRAFV----EPGDTVLIPEPTFSMYEIAAQLA---GAEVVKVPLKE-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLP  163 (356)
T ss_pred             HHHhh----cCCCEEEEcCCChHHHHHHHHhc---CCeEEEecccc-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            99999    89999999999999888777766   99999999887 889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhc--CCcEEEehhhhcCCCc--ccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCcc
Q 040741          215 MEEIGQICKEF--KIPFHTDAAQALGKIP--VDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       215 l~~i~~l~~~~--~v~li~D~a~~~g~~~--~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      .++|.+++...  +.++++|+|+.=...+  ... ...+.-+++-||+|.||.+|  +|+.+.+++.++.+.....-|  
T Consensus       164 ~~~l~~l~~~~~~~~~vVvDEAY~eF~~~~~~~l~~~~~nlivlRTfSKa~gLAGlRlGy~ia~~~~i~~l~~vr~p~--  241 (356)
T COG0079         164 REELRALLEALPEGGLVVIDEAYIEFSPESSLELLKYPPNLIVLRTFSKAFGLAGLRVGYAIANPELIAALNKVRPPF--  241 (356)
T ss_pred             HHHHHHHHHhCCCCcEEEEeCchhhcCCchhhhhccCCCCEEEEEecHHhhhcchhceeeccCCHHHHHHHHHhcCCC--
Confidence            88888877754  8899999999732221  111 12222477889999998776  999999988777776655432  


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLL  367 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (457)
                             ..+.+...+..++++.- +.+++..++..+.++++.+.|++ ++...++.+.    .+++.+.++......+.
T Consensus       242 -------~v~~~a~~aa~aal~~~-~~~~~~~~~~~~~r~rl~~~l~~-~~~~~v~pS~----aNFvlv~~~~~~~~~l~  308 (356)
T COG0079         242 -------NVSSPALAAAIAALRDA-DYLEESVERIREERERLYAALKA-LGLFGVFPSQ----ANFVLVRVPDAEAAALA  308 (356)
T ss_pred             -------CCCHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHHHHHHHh-CCCCeecCCC----CcEEEEECCCccHHHHH
Confidence                   45666666666666544 56888999999999999999999 6523254432    56666666531233566


Q ss_pred             hcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          368 MGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       368 ~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..|  +||.++.-..                  .....+++||+++   ++|+-++++++|.++++.
T Consensus       309 ~~L~~~giivR~~~~------------------~~~~~~~lRitvg---t~een~~ll~AL~~~~~~  354 (356)
T COG0079         309 EALLKKGILVRDCSS------------------VGLLPGYLRITVG---TPEENDRLLAALREVLKG  354 (356)
T ss_pred             HHHHHCCEEEEeCCC------------------CCCCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence            666  6888875421                  1122379999999   488889999999988764

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.95  E-value=4.2e-25  Score=220.30  Aligned_cols=328  Identities=16%  Similarity=0.131  Sum_probs=225.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C---CCCC-cEEEeCC
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G---ASPK-EIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~-~i~~t~g  126 (457)
                      .+.+.|..+.+. .+++.+.+++.+.+...    .  ...|+   .....++++.+++++    |   ++++ +|++|+|
T Consensus        44 ~~~i~L~~g~p~~~~~~~~~~~l~~~~~~~----~--~~~Y~---~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~G  114 (410)
T PRK06290         44 MELIDMGVGEPDEMADESVVEVLCEEAKKP----E--NRGYA---DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIG  114 (410)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC----C--CCCCC---CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccC
Confidence            345777776666 46677888887765321    0  01111   023456666666664    4   5565 6999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEec
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      +++++.+++.++.    ++|+.|+++.+.|+.+...++..   |.+++.++.+.  ++.+|++++++++.+++++|++++
T Consensus       115 s~~al~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~n  187 (410)
T PRK06290        115 SKPALAMLPSCFI----NPGDVTLMTVPGYPVTGTHTKYY---GGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNY  187 (410)
T ss_pred             HHHHHHHHHHHhC----CCCCEEEEeCCCCccHHHHHHHc---CCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEEC
Confidence            9999999999988    89999999999999988777666   99999999874  346799999999988999999999


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cccc---CC-CCcccEEEeccccccCCCC--ceEEEEec
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVD---VE-KWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~---~~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      ++||||.+++   +++|.++|++||++|++|++|....   .+..   .. ..+.++++.|++|.+|.+|  +|++++++
T Consensus       188 P~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~GlRiG~ii~~~  267 (410)
T PRK06290        188 PNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNE  267 (410)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCchhheEeEEeCH
Confidence            9999999999   5778888999999999999997432   1111   11 1245799999999887666  89999987


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++.......      .. ..+.+...++..+++. .+.+++..++++++++++.+.|++ + ++.+..+. .  ..
T Consensus       268 ~l~~~l~~~~~~~------~~-~~~~~~q~aa~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~p~-g--~f  334 (410)
T PRK06290        268 LIVKAFATVKDNN------DS-GQFIAIQKAGIYALDH-PEITEKIREKYSRRLDKLVKILNE-V-GFKAEMPG-G--TF  334 (410)
T ss_pred             HHHHHHHHHHhcc------cc-CCcHHHHHHHHHHhhC-cHHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCC-e--ee
Confidence            7665554333211      11 2222233333334332 123567788888999999999998 5 66654321 1  22


Q ss_pred             eEEEEEcc--------ccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC-CCHHHHH
Q 040741          353 NLNLSFAY--------VEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF-TTEAEVD  420 (457)
Q Consensus       353 ~~~~~~~~--------~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~-~t~edid  420 (457)
                      ++.+.++.        .+..++...|  + ++.+.+|..+                     ++++||+++.. .++|+.+
T Consensus       335 ~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~---------------------~~~lRi~~~~~~~~~~~~~  393 (410)
T PRK06290        335 YLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDA---------------------GHFLRFSVTFEAKDEEEED  393 (410)
T ss_pred             EEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccc---------------------cCeEEEEEEcccccccchh
Confidence            22334432        1345666666  3 4555554321                     16899999753 4688999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          421 RAIELTVKQVEKL  433 (457)
Q Consensus       421 ~~~~~l~~~~~~~  433 (457)
                      +++++|++.+.++
T Consensus       394 ~~~~~l~~~~~~~  406 (410)
T PRK06290        394 RILEEIKRRLSDV  406 (410)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999888764

>PRK05968 hypothetical protein; Provisional

Probab=99.95  E-value=1.5e-25  Score=221.68  Aligned_cols=308  Identities=13%  Similarity=0.095  Sum_probs=221.6

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|+....+.+.++++.+++++|.+.  .+++++|+.|+.+++.++.    ++||+|+++.+.|.+....+. .+...|++
T Consensus        56 ~Y~r~~~p~~~~le~~lA~l~g~~~--av~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~  129 (389)
T PRK05968         56 IYSRGDNPTVRAFEEMLAKLEGAED--ARGFASGMAAISSTVLSFV----EPGDRIVAVRHVYPDAFRLFETILKRMGVE  129 (389)
T ss_pred             cccCCCChhHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCce
Confidence            3444445779999999999999864  5667888999999998887    899999999999988765443 44566999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++.+     |++++++++ ++|++|+++++.|+++.+.++++|.++|+++|+++++|++++.+..... ...++|++
T Consensus       130 v~~vd~~-----d~~~l~~~i-~~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~p-~~~g~Div  202 (389)
T PRK05968        130 VDYVDGR-----DEEAVAKAL-PGAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQRP-ITLGVDLV  202 (389)
T ss_pred             EEEeCCC-----CHHHHHHhc-ccCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccCc-hhcCCcEE
Confidence            9999755     899999998 6789999999999999999999999999999999999999987643222 23578999


Q ss_pred             EeccccccC-CCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYG-PKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       253 ~~s~~K~~g-~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +.|++|+++ +.+  .|+++.+++..++++.....+      ..+..+......+..++    +.+..+.++..++++++
T Consensus       203 v~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~------~g~~~~~~~A~~~l~~L----~tl~~r~~~~~~~a~~l  272 (389)
T PRK05968        203 IHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPY------LGAKLSPFEAWLLLRGL----RTLPLRMKAHEASALEI  272 (389)
T ss_pred             EeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHh------CCCCCChHHHHHHHccc----CcHHHHHHHHHHHHHHH
Confidence            999999654 433  588887776555554322100      01133332222222222    24677788888889999


Q ss_pred             HHHHhhcCCCeEEeCCCC---------CcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCC---CCC-----hh
Q 040741          330 LNGIKEKLDGVVVNGSME---------RRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSA---SLE-----PS  389 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~---~~~-----~~  389 (457)
                      .+.|++ .|++..+..+.         ..+++++.|.+. +.+..++...|  .+++++.|..|+..   +..     +.
T Consensus       273 a~~L~~-~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~~~~~~f~~~L~~~~~~~s~G~~~slv~p~~~~~~~~~~~  351 (389)
T PRK05968        273 ARRLKA-HPVVERVCHPALANHPPAGLSGTSGLFSFIFREGIDVRAFADALKLFRLGVSWGGHESLVVPAEVVLQQKAQP  351 (389)
T ss_pred             HHHHHh-CCCccEEECCCCCCChHHhCCCCceEEEEEECCHHHHHHHHHhCCccEEecCCCCCCceeeeCcccccccCCH
Confidence            999998 88885543221         134567778875 33455677777  57888889888732   211     12


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      -..+..|+++    +.||++++.    |+.+.+++.|++++++.
T Consensus       352 ~~~~~~gi~~----~liR~SvGl----E~~~dl~~dl~~al~~~  387 (389)
T PRK05968        352 NSAARFGVSP----RSVRLHVGL----EGTEALWADLEQALAAA  387 (389)
T ss_pred             HHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHHh
Confidence            2344667654    899999997    66777777777777643

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.95  E-value=7.5e-25  Score=218.21  Aligned_cols=330  Identities=16%  Similarity=0.153  Sum_probs=222.0

Q ss_pred             cEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCChHHH
Q 040741           58 PLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGATES  130 (457)
Q Consensus        58 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~T~a  130 (457)
                      .+.|..+.+. ++++.+.+++.+.+.......    ..  |.......++++.++++++      ++++++++|+|++++
T Consensus        35 ~~~l~~g~p~~~~~~~v~~a~~~~~~~~~~~~----~~--y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~a  108 (394)
T PRK06836         35 VFDFSLGNPSVPPPAAVKEALRELAEEEDPGL----HG--YMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGA  108 (394)
T ss_pred             eEEecCcCCCCCCCHHHHHHHHHHHhcCCcCc----cc--CCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHH
Confidence            3556554443 457888998888775321111    11  1112346667777777764      568889999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +..++.+++    .+|+.|+++.+.|..+...++..   |.++++++.+.+ +.+|+++++++++++++++++++++||+
T Consensus       109 l~~~~~~l~----~~gd~Vli~~p~~~~~~~~~~~~---g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~p~NPt  181 (394)
T PRK06836        109 LNVALKAIL----NPGDEVIVFAPYFVEYRFYVDNH---GGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINSPNNPT  181 (394)
T ss_pred             HHHHHHHhc----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeCCCCCC
Confidence            999999987    89999999999998887665544   999999998765 6799999999999999999999999999


Q ss_pred             ccccC---hHHHHHHHHh------cCCcEEEehhhhcCCC---c-cc-CCCCcccEEEeccccccCCCC--ceEEEEecC
Q 040741          210 GVIQP---MEEIGQICKE------FKIPFHTDAAQALGKI---P-VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~------~~v~li~D~a~~~g~~---~-~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      |.++|   +++|+++|++      ||+++++|+++..-..   + .. ....+..+++.|++|.+|.+|  +|+++++++
T Consensus       182 G~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~~~~~  261 (394)
T PRK06836        182 GVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGYIAVNPE  261 (394)
T ss_pred             CcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEEEecCHH
Confidence            99998   5667778998      8999999999863211   1 11 112234688899999887555  999999865


Q ss_pred             CCcc--ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          274 PRIR--VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       274 ~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ..+.  +...........+  ....+.....++...+   .+.  ...+++++.++.+.+.|++ + ++.+..+. .  +
T Consensus       262 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l---~~~--~~~~~~~~~r~~l~~~L~~-~-g~~~~~~~-g--g  329 (394)
T PRK06836        262 MEDADDLVAALVFANRILG--FVNAPALMQRVVAKCL---DAT--VDVSIYKRNRDLLYDGLTE-L-GFECVKPQ-G--A  329 (394)
T ss_pred             HhhhHHHHHHHHHHhhccc--cccCCHHHHHHHHHHh---CCh--HHHHHHHHHHHHHHHHHHh-C-CCEeecCC-c--e
Confidence            4321  1111100000000  0122222223222222   221  2345677788888888888 5 56554321 1  2


Q ss_pred             ceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          352 GNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .++.+.++..+..++...+  +||.+.+|..+..                   .+++||+++  .++++++..+++|+++
T Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~gv~v~~g~~f~~-------------------~~~iRi~~~--~~~~~~~~~i~~l~~~  388 (394)
T PRK06836        330 FYLFPKSPEEDDVAFCEKAKKHNLLLVPGSGFGC-------------------PGYFRLSYC--VDTETIERSLPAFEKL  388 (394)
T ss_pred             EEEEEeCCCCCHHHHHHHHHhCCEEEECchhcCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence            2333334433556666555  6899998864421                   279999998  4799999999999999


Q ss_pred             HHHH
Q 040741          430 VEKL  433 (457)
Q Consensus       430 ~~~~  433 (457)
                      +++.
T Consensus       389 l~~~  392 (394)
T PRK06836        389 AKEY  392 (394)
T ss_pred             HHHh
Confidence            8765

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.95  E-value=5e-25  Score=220.11  Aligned_cols=331  Identities=16%  Similarity=0.162  Sum_probs=221.1

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~T  128 (457)
                      +.+.|..+.+. +.++.+++++.+.....  .    .  .+|.......++|+.+++++    |  ++++ ++++|+|++
T Consensus        34 ~~~~l~~g~p~~~~~~~~~~~~~~~~~~~--~----~--~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~  105 (403)
T PRK08636         34 DIIDFSMGNPDGPTPQHIIDKLCESAQKP--K----T--HGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSK  105 (403)
T ss_pred             CEEEcCCcCCCCCCCHHHHHHHHHHhcCC--c----c--CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChH
Confidence            44556554444 34666777776654321  0    0  11111123445555555554    6  4566 699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHH----HHHhcC---CCceE
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDE----LRAAIR---PDTGL  199 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~----le~~i~---~~t~l  199 (457)
                      +|+.+++.+++    ++||.|++.++.|+.+...+...   |.+++.++.+  .+..+|++.    ++++++   +++++
T Consensus       106 ~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~  178 (403)
T PRK08636        106 EGYVHLVQAIT----NPGDVAIVPDPAYPIHSQAFILA---GGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKY  178 (403)
T ss_pred             HHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHhc---CCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceE
Confidence            99999999998    89999999999999998877766   9999999875  335688764    466664   57889


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc---cCCCC-cccEEEeccccccCCCC--ce
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV---DVEKW-NVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~---~~~~~-~~Di~~~s~~K~~g~~G--~G  266 (457)
                      +++++++||||.+++   +++|+++|++|+++||+|++++....    ..   .+... +..+++.|++|.+|.+|  +|
T Consensus       179 i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG  258 (403)
T PRK08636        179 VVVNFPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVG  258 (403)
T ss_pred             EEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceee
Confidence            999999999999998   56788899999999999999873211    11   12111 23355789999887555  99


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +++.+++++.++......      ...+...+.+. ++..++......+++..+.++++++.+.+.|++ . ++.+..+ 
T Consensus       259 ~iv~~~~li~~~~~~~~~------~~~~~~~~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~p-  328 (403)
T PRK08636        259 FVVGNKKLVGALKKIKSW------LDYGMFTPIQV-AATIALDGDQSCVEEIRETYRKRRDVLIESFAN-A-GWELQKP-  328 (403)
T ss_pred             eeeCCHHHHHHHHHHHHH------hcccCChHHHH-HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccCC-
Confidence            999887766655443211      01122233333 232343322334677788888889999999988 4 5554332 


Q ss_pred             CCcccceEEEEEcc----ccchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          347 ERRYIGNLNLSFAY----VEGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       347 ~~~~~~~~~~~~~~----~~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      ..  +.++.+.++.    .+..++... +  .||.+.+|..+..                 ...+++||+++  .+.+++
T Consensus       329 ~~--g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~-----------------~~~~~iRi~~~--~~~~~l  387 (403)
T PRK08636        329 RA--SMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGE-----------------YGDEYVRIALI--ENENRI  387 (403)
T ss_pred             Cc--ceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCc-----------------CCCCeEEEEec--CCHHHH
Confidence            11  3344455542    234566654 3  5899998865421                 11379999997  478999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      ++.+++|+++++.+
T Consensus       388 ~~~~~rl~~~l~~~  401 (403)
T PRK08636        388 RQAARNIKKFLKEL  401 (403)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998764

>PLN02242 methionine gamma-lyase

Probab=99.94  E-value=1.5e-25  Score=222.65  Aligned_cols=312  Identities=17%  Similarity=0.165  Sum_probs=222.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH--HhcC
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL--QQEG  170 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G  170 (457)
                      +.|+....+.+.++++.+++++|.+.  +++++||++|+.+++.+++    ++||+|+++.+.|+.+...+...  +..|
T Consensus        68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~~--~l~~~sG~~Ai~~al~al~----~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G  141 (418)
T PLN02242         68 YIYSRHFNPTVLNLGRQMAALEGTEA--AYCTASGMSAISSVLLQLC----SSGGHVVASNTLYGGTHALLAHFLPRKCN  141 (418)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHh----CCCCEEEEcCCcHHHHHHHHHHhhhhccC
Confidence            44555566899999999999999876  8899999999999999998    89999999999888776654321  2358


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      .++++++..     |++++++++++ ++++|++++++||+|.+.++++|.++|+++|+++++|++++...  ++...++.
T Consensus       142 ~~~~~~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~--~~~~~~g~  214 (418)
T PLN02242        142 ITTTFVDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMV--LSPARLGA  214 (418)
T ss_pred             ceEEEcCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccC--CCHHHcCC
Confidence            888887754     89999999998 49999999999999999999999999999999999999996443  23345578


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++.|++|.+++.|   +|+++.+++.+.++.....+.    ....|....+..+ +..+..  ...+..++++..+++
T Consensus       215 divv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~----~~~~g~~~~~~~A-~l~~~~--l~tl~~r~~~~~~~a  287 (418)
T PLN02242        215 DVVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGA----LMLLGPTMNPKVA-FELSER--LPHLSLRMKEHCRRA  287 (418)
T ss_pred             cEEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhh----hhccCCCCCHHHH-HHHHcC--CCcHHHHHHHHHHHH
Confidence            999999999776544   588888876655554432210    0112222222222 222221  124566778899999


Q ss_pred             HHHHHHHhhcCCCeEEeCCC--C--------------CcccceEEEEEcccc-chHHHhccc------CeEecccCccCC
Q 040741          327 DRLLNGIKEKLDGVVVNGSM--E--------------RRYIGNLNLSFAYVE-GESLLMGLK------EVAVSSGSACTS  383 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~--~--------------~~~~~~~~~~~~~~~-~~~~~~~l~------~i~~~~g~~~~~  383 (457)
                      +++.+.|++ ++ +.++-+.  +              ...++++.|.+.+.+ ...++..++      .+++.-|...+.
T Consensus       288 ~~la~~L~~-~~-~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~~~~~~~~~~~slG~~~sl  365 (418)
T PLN02242        288 MEYAKRMKE-LG-LKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTEERANRLMRYLQNSTQFGFMAVSLGYYETL  365 (418)
T ss_pred             HHHHHHHHh-CC-CEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCHHHHHHHHHHhhcccccceeeecCCCCCce
Confidence            999999999 64 5565321  1              235677777775321 335566665      456666665432


Q ss_pred             C----CCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHH-HHHHHHHHHHHHHHHHH
Q 040741          384 A----SLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEA-EVDRAIELTVKQVEKLR  434 (457)
Q Consensus       384 ~----~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~e-did~~~~~l~~~~~~~~  434 (457)
                      .    ...+    .-.....|+++    +.|||+++.    | |+|.+++.|++++++++
T Consensus       366 ~~~p~~~~~~~~~~~~~~~~gi~~----~liRlsvGl----E~~~~dli~dl~~al~~~~  417 (418)
T PLN02242        366 MSCSGSSTSSELDPEEKAAAGISP----GLVRMSVGY----TGTLEQRWSQFEKALSAMK  417 (418)
T ss_pred             eeCCCccccccCCHHHHHhcCCCC----CeEEEEecC----CCCHHHHHHHHHHHHHHhh
Confidence            2    1111    11223466654    899999997    7 49999999999998765

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.94  E-value=1.9e-25  Score=220.84  Aligned_cols=309  Identities=18%  Similarity=0.189  Sum_probs=219.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~  172 (457)
                      .|++...+...++++.+++++|.+.  +++++||+.|+.+++.++.    ++|++|+++.+.|.+....... +...|++
T Consensus        52 ~y~r~~~p~~~~le~~lA~l~g~~~--av~~~sG~~Ai~~~l~al~----~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~~  125 (391)
T TIGR01328        52 IYSRLGNPTVSNLEGRIAFLEGTEA--AVATSSGMGAIAATLLTIL----KAGDHLISDECLYGCTFALLEHALTKFGIQ  125 (391)
T ss_pred             ceeCCCCchHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEecCcchHHHHHHHHHHhcCCeE
Confidence            3444445678899999999999876  8899999999999998887    8999999999999877665543 3556999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++.+     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... ..+.|++
T Consensus       126 ~~~vd~~-----d~e~l~~~i~~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~~~-~~g~Div  199 (391)
T TIGR01328       126 VDFINMA-----IPEEVKAHIKDNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTNPV-ALGVDVV  199 (391)
T ss_pred             EEEECCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCCch-hcCCCEE
Confidence            9999876     899999999999999999999999999999999999999999999999999876543222 3578999


Q ss_pred             EeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       253 ~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +.|++|++|..|   .|+++.+++.+++++......     ...+..+....+.+...+    +.+..++++..+++.++
T Consensus       200 v~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~-----~~g~~l~~~~a~l~l~~L----~tl~~r~~~~~~na~~l  270 (391)
T TIGR01328       200 VHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKD-----MTGSVISPFDAWLILRGL----KTLNIRMKRHSENAMKV  270 (391)
T ss_pred             EccccccccCCCCceEEEEEcCHHHHHHHHHHHHHh-----CCCCCCCcHHHHHHHhCc----CcHHHHHHHHHHHHHHH
Confidence            999999776544   578877766555444211100     001133322222222222    24566788889999999


Q ss_pred             HHHHhhcCCCeEEeCCC---C-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCCCC
Q 040741          330 LNGIKEKLDGVVVNGSM---E-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SASLE  387 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~~  387 (457)
                      .+.|++ .|++..+-.|   +           ...++++.|.+++-  ....++..|+  .++.+-|...+    +....
T Consensus       271 a~~L~~-~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~  349 (391)
T TIGR01328       271 AEYLKS-HPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGFAGAKKLLNNLKLIRLAVSLGDAETLIQHPASMT  349 (391)
T ss_pred             HHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCHHHHHHHHHhCCcceEecCCCCCcccCcCCCccc
Confidence            999998 7876432111   1           12467788887631  1345556664  44555565433    22221


Q ss_pred             h----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          388 P----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       388 ~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++.
T Consensus       350 ~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~  390 (391)
T TIGR01328       350 HAVVPKEEREAAGITD----GMIRLSVGL----EDADDLIADLKQALDA  390 (391)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHhh
Confidence            1    11233556554    899999997    7899999999998875

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1e-24  Score=215.51  Aligned_cols=318  Identities=18%  Similarity=0.135  Sum_probs=221.7

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+.|+.+.+. .+++.+.+++.+.......+|..          .. .++++.+++++|++++++++|+|+++++.++
T Consensus        36 ~~~i~l~~~~~~~~~~~~~~~al~~~~~~~~~Y~~~----------~g-~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~  104 (371)
T PRK05166         36 PRIAKLGSNENPLGPSPAVRRAFADIAELLRLYPDP----------QG-RALREAIAARTGVPADRIILGNGSEDLIAVI  104 (371)
T ss_pred             cceEEcCCCCCCCCCCHHHHHHHHHHHHHhhcCCCC----------cH-HHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            356777776555 56788888887754432222211          12 3799999999999988999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +.++.    ++||+|++..++|+.+...++..   |.+++.++.+.++.+|+++++++++++++++++++++||||.+.+
T Consensus       105 ~~~~~----~~gd~vli~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~  177 (371)
T PRK05166        105 CRAVL----RPGDRVVTLYPSFPLHEDYPTMM---GARVERVTVTPDLGFDLDALCAAVARAPRMLMFSNPSNPVGSWLT  177 (371)
T ss_pred             HHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCeEEEeecCCCCCCCHHHHHHhhhcCCCEEEEeCCCCCCCCCCC
Confidence            99887    89999999999998776665554   999999999877789999999999989999999999999999999


Q ss_pred             hHHHHHHHHh--cCCcEEEehhhhcCCC----c--cc-CCCC-cccEEEeccccccCCCC--ceEEEEe-cCCCcccccc
Q 040741          215 MEEIGQICKE--FKIPFHTDAAQALGKI----P--VD-VEKW-NVSLMSLSGHKIYGPKG--VGALYMR-RRPRIRVEPL  281 (457)
Q Consensus       215 l~~i~~l~~~--~~v~li~D~a~~~g~~----~--~~-~~~~-~~Di~~~s~~K~~g~~G--~G~l~~~-~~~~~~~~~~  281 (457)
                      .+++.++++.  .++++++|+++.-...    +  .. .... ...+++.|++|.||.+|  +|++++. ++..+.+...
T Consensus       178 ~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l~~~~~~~  257 (371)
T PRK05166        178 ADQLARVLDATPPETLIVVDEAYAEYAAGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPELVGLLDRV  257 (371)
T ss_pred             HHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcccHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHHHHHHHHh
Confidence            7777666654  3789999999863221    1  01 1111 23478899999888555  8998864 4443433322


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      ...         ...+.....++.+++.. .+.+++..+.++++++++.+.|++ . ++.+.. +.   +.++.+.++ .
T Consensus       258 ~~~---------~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~p-~~---g~fl~~~~~-~  320 (371)
T PRK05166        258 RTP---------FNVNGAAQAAALAALDD-EEHLAKGVALALAERERLKKELAE-M-GYRIAP-SR---ANFLFFDAR-R  320 (371)
T ss_pred             ccC---------CCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-cCeeCC-Cc---CCEEEEeCC-C
Confidence            211         12343333333344432 234677778888888999999998 5 665432 22   334444433 2


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +..++...+  +||.+.+|...              +     ..++|||+++.   .++.+++++.|++.+
T Consensus       321 ~~~~l~~~l~~~gi~v~p~~~~--------------~-----~~~~iRi~~~~---~~~~~~l~~~l~~i~  369 (371)
T PRK05166        321 PASAVAEALLRQGVIVKPWKQP--------------G-----FETFIRVSIGS---PEENDHFVAALDKVL  369 (371)
T ss_pred             CHHHHHHHHHHCCeEEecCCCC--------------C-----CCCeEEEEcCC---HHHHHHHHHHHHHHh
Confidence            445666665  68988876421              1     13799999984   677888888887654

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.94  E-value=2.5e-25  Score=219.75  Aligned_cols=300  Identities=14%  Similarity=0.149  Sum_probs=211.1

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEe
Q 040741           99 SEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLP  177 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~  177 (457)
                      ..+...++++.+++++|++.  +++++||++|+.+++.++.    ++|++|+++...|.+...... .+...|.++++++
T Consensus        52 ~~p~~~~le~~la~l~g~~~--~~~~~sG~~Ai~~al~al~----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~v~~v~  125 (380)
T TIGR01325        52 ANPTVAAFEERIAALEGAER--AVATATGMSAIQAALMTLL----QAGDHVVASRSLFGSTVGFISEILPRFGIEVSFVD  125 (380)
T ss_pred             CCchHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEecCCcchHHHHHHHHHHHhCCEEEEEC
Confidence            34678899999999999854  8899999999999999887    899999999988887655443 3456699999998


Q ss_pred             CCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccc
Q 040741          178 VGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGH  257 (457)
Q Consensus       178 ~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~  257 (457)
                      .+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+..... ...++|+++.|++
T Consensus       126 ~~-----d~~~l~~~i~~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~~p-l~~g~Divv~S~s  199 (380)
T TIGR01325       126 PT-----DLNAWEAAVKPNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQQP-LKLGADVVVYSAT  199 (380)
T ss_pred             CC-----CHHHHHHhcCCCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCc-hhhCCCEEEeecc
Confidence            65     89999999999999999999999999999999999999999999999999975432222 2457899999999


Q ss_pred             cccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          258 KIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       258 K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      |++++.|   .|+++.+++..+++.......       .++.++.....+...    .+.+..++++..+++.++.+.|+
T Consensus       200 K~l~g~g~~~gG~vv~~~~~~~~l~~~~~~~-------g~~~~p~~a~~~l~~----l~tl~~r~~~~~~~a~~la~~L~  268 (380)
T TIGR01325       200 KHIDGQGRVMGGVIAGSEELMAEVAVYLRHT-------GPAMSPFNAWVLLKG----LETLSLRMQKQFDSALAIAEWLQ  268 (380)
T ss_pred             ceecCCCCeEEEEEEeCHHHHHHHHHHHHhh-------CCCCCHHHHHHHHhc----cCcHHHHHHHHHHHHHHHHHHHH
Confidence            9776543   377777766555544332211       112232222222222    23456678888889999999998


Q ss_pred             hcCCCeEEeCCC---C-----------CcccceEEEEEccc-cchHHHhccc--CeEecccCccC----CCCCChh----
Q 040741          335 EKLDGVVVNGSM---E-----------RRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSACT----SASLEPS----  389 (457)
Q Consensus       335 ~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~~~----  389 (457)
                      + .|++.-+-.|   .           ...++++.|.+.+. ....++..|+  .+++.-|...+    +....+.    
T Consensus       269 ~-~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~~~~~~  347 (380)
T TIGR01325       269 A-QPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADRAAAWKVLDAVELVSITNNLGDAKSTITHPATTTHGRMQP  347 (380)
T ss_pred             c-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEcccCCCCCeeeeCCCccCcccCCH
Confidence            8 7776432111   1           23567787887621 1345666664  44555554332    2222111    


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      -.....|+.+    +.|||+++.    ||.|.+++.|++++
T Consensus       348 ~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al  380 (380)
T TIGR01325       348 EERAAAGIGD----GLVRLSVGL----EDVDDLIADLKRAL  380 (380)
T ss_pred             HHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHhhC
Confidence            1223566654    899999997    78888888887753

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.94  E-value=2.3e-25  Score=218.40  Aligned_cols=291  Identities=23%  Similarity=0.248  Sum_probs=215.7

Q ss_pred             HHHHHHHHHHHHHhCCC------CCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEE
Q 040741          101 VAVETARSQIADLIGAS------PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT  174 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~------~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~  174 (457)
                      ....++++.++++++..      ++++++++|+|+++..++.++.    ++|++|+++.+.|.++..+++..   |.+++
T Consensus        36 ~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~---~~~~~  108 (350)
T cd00609          36 PGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALL----NPGDEVLVPDPTYPGYEAAARLA---GAEVV  108 (350)
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEE
Confidence            45666777777777654      5679999999999999999887    78999999999999999887776   99999


Q ss_pred             EEeCCCCCCCCH--HHHHHhcCCCceEEEEeccccccccccChHHH---HHHHHhcCCcEEEehhhhcCCCc-------c
Q 040741          175 YLPVGADGIVNL--DELRAAIRPDTGLISVMAVNNEIGVIQPMEEI---GQICKEFKIPFHTDAAQALGKIP-------V  242 (457)
Q Consensus       175 ~v~~~~~~~~d~--~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i---~~l~~~~~v~li~D~a~~~g~~~-------~  242 (457)
                      .++.+.++..+.  +.+++.+.+++++|++++++|++|.+.|++++   .++|+++|+++|+|++++.+...       .
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~~~~~  188 (350)
T cd00609         109 PVPLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPPPALA  188 (350)
T ss_pred             EEecccccCCccCHHHHHhhcCccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccccccc
Confidence            999987776665  67777888899999999999999999986554   58999999999999999864321       2


Q ss_pred             cCCCCcccEEEeccccccC--CCCceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHH
Q 040741          243 DVEKWNVSLMSLSGHKIYG--PKGVGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDH  319 (457)
Q Consensus       243 ~~~~~~~Di~~~s~~K~~g--~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~  319 (457)
                      .....+.|+++.|++|.++  +.++|++++++ +..+.+.....       ...++++.....++..+++...+++++..
T Consensus       189 ~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  261 (350)
T cd00609         189 LLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLP-------YTTSGPSTLSQAAAAAALDDGEEHLEELR  261 (350)
T ss_pred             CcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHH-------hcccCCChHHHHHHHHHHhCcHHHHHHHH
Confidence            2344568999999999765  33589999987 44444443221       22346677777777777776545678888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741          320 KRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       320 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      ++++++++++.+.|.+ .+...+.. +  ..+..+.+.++.. ....+...+  .||.+..+..+..             
T Consensus       262 ~~~~~~~~~l~~~L~~-~~~~~~~~-~--~~g~~~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~~~~-------------  324 (350)
T cd00609         262 ERYRRRRDALLEALKE-LGPLVVVK-P--SGGFFLWLDLPEGDDEEFLERLLLEAGVVVRPGSAFGE-------------  324 (350)
T ss_pred             HHHHHHHHHHHHHHHh-cCCccccC-C--CccEEEEEecCCCChHHHHHHHHHhCCEEEeccccccc-------------
Confidence            9999999999999998 55544311 1  2234444444433 233344444  4888876654321             


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                          ....+|||+++..  ++|+++++++|++
T Consensus       325 ----~~~~~iRi~~~~~--~~~i~~~~~al~~  350 (350)
T cd00609         325 ----GGEGFVRLSFATP--EEELEEALERLAE  350 (350)
T ss_pred             ----CCCCeEEEEeeCC--HHHHHHHHHHhhC
Confidence                2337999999987  9999999998863

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=2.5e-25  Score=218.05  Aligned_cols=281  Identities=16%  Similarity=0.176  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD  181 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~  181 (457)
                      ..++++++++++|+++++|++|+|+++++.+++.++.    ++| +.|++..++|..+...++..   |++++.++.+.+
T Consensus        59 ~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~----~~g~~~vli~~P~y~~y~~~~~~~---G~~~~~v~~~~~  131 (351)
T PRK01688         59 PKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVEIRTVPTLDN  131 (351)
T ss_pred             hHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc----CCCCCEEEEcCCCHHHHHHHHHHc---CCEEEEeecCCC
Confidence            4688999999999999999999999999999999887    776 89999999998877666555   999999999877


Q ss_pred             CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc--CCcEEEehhhhcCCCcc---c-CCCCcccEEEec
Q 040741          182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF--KIPFHTDAAQALGKIPV---D-VEKWNVSLMSLS  255 (457)
Q Consensus       182 ~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~---~-~~~~~~Di~~~s  255 (457)
                      +.+|++++++++ +++++|++++++||||.+.+.+++.++++..  ++++++|++|.-.....   + +..+..-+++.|
T Consensus       132 ~~~d~~~l~~~~-~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s~~~~~~~~~n~iv~rS  210 (351)
T PRK01688        132 WQLDLPAIADNL-DGVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLVILRT  210 (351)
T ss_pred             CCCCHHHHHHhc-cCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCChHHHHhhCCCEEEEec
Confidence            889999999988 5899999999999999999977776666532  68899999986332110   1 122234578889


Q ss_pred             cccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       256 ~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~  332 (457)
                      +||.||.+|  +|+++++++.++.+......+         ..+.....++.++++.. .+.+.+..+.+++.++++.+.
T Consensus       211 fSK~~glaGlRiGy~i~~~~~i~~l~~~~~~~---------~v~~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~  281 (351)
T PRK01688        211 LSKAFALAGLRCGFTLANEEVINLLLKVIAPY---------PLSTPVADIAAQALSPQGIAAMRERVAEINANRQWLIAA  281 (351)
T ss_pred             chHhhcCHHHHHhHHhCCHHHHHHHHhccCCC---------CCCHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            999998777  799999887766655443221         23333333333344321 234566677778888999999


Q ss_pred             HhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          333 IKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      |++ ++++..+.+..   .+++.+.+.  +...+...|  +||.++.+..+.             |.     .+++||++
T Consensus       282 L~~-~~~~~~~~ps~---~nfi~~~~~--~~~~l~~~L~~~gi~vr~~~~~~-------------~~-----~~~iRis~  337 (351)
T PRK01688        282 LKE-IPCVEQVFDSE---TNYILARFT--ASSAVFKSLWDQGIILRDQNKQP-------------GL-----SNCLRITI  337 (351)
T ss_pred             HHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEEECCCcC-------------CC-----CCeEEEeC
Confidence            988 77764232221   444455543  456666655  688887643211             11     27999999


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTV  427 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~  427 (457)
                      +   +++|+++++++|+
T Consensus       338 ~---~~~e~~~l~~al~  351 (351)
T PRK01688        338 G---TREECQRVIDALR  351 (351)
T ss_pred             C---CHHHHHHHHHhhC
Confidence            8   5899999998873

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.94  E-value=1.5e-25  Score=219.08  Aligned_cols=309  Identities=19%  Similarity=0.182  Sum_probs=207.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCC
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      +..+++.+++++.+......        .  +...+...++++.+++++|  ++++++++|||+++.+++.++.    ++
T Consensus         7 ~~~~~~~v~~a~~~~~~~~~--------~--~~~~~~~~~l~~~~a~~~g--~~~~~~~~~gt~a~~~~~~~l~----~~   70 (338)
T cd06502           7 VTGPTPEMLEAMAAANVGDD--------V--YGEDPTTAKLEARAAELFG--KEAALFVPSGTAANQLALAAHT----QP   70 (338)
T ss_pred             CCCCCHHHHHHHHhcccCCc--------c--cCCCHHHHHHHHHHHHHhC--CCeEEEecCchHHHHHHHHHhc----CC
Confidence            34678999999988653210        1  1122578899999999999  4569999999999999999887    89


Q ss_pred             CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-------CceEEEEeccccccccc---cCh
Q 040741          146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-------DTGLISVMAVNNEIGVI---QPM  215 (457)
Q Consensus       146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-------~t~li~i~~~~~~~G~~---~~l  215 (457)
                      |+.|+++.++|.+...........|.+++.++.+. +.+|++++++++++       ++++|++++++|+ |.+   .++
T Consensus        71 gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~~~~~l  148 (338)
T cd06502          71 GGSVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVYPLDEL  148 (338)
T ss_pred             CCeEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-ccccCHHHH
Confidence            99999999999887653222223499999998764 67999999999975       7899999999997 544   347


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCC-----CcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGK-----IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~-----~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      ++|+++|+++|+++|+|+||..+.     ..+.....++|+++.|+||++|.+|.++++.+++.++++.+....++.   
T Consensus       149 ~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~---  225 (338)
T cd06502         149 KAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGG---  225 (338)
T ss_pred             HHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCC---
Confidence            789999999999999999985331     121111236789999999988866645556676666665543321110   


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHh
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLM  368 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  368 (457)
                        ..+.+.....+...+++.  ..+.+..++..++++++.+.|++ ++ +.+..    ...+++.+.++...  ...+..
T Consensus       226 --~~~~~~~~~~a~~~~L~~--~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~----~~~~~~~v~~~~~~~~~~~l~~  295 (338)
T cd06502         226 --GMRQSGFLAAAGLAALEN--DLWLRRLRHDHEMARRLAEALEE-LG-GLESE----VQTNIVLLDPVEANAVFVELSK  295 (338)
T ss_pred             --ChhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHh-cC-CCccc----ccCCeEEEecCCccHHHHHHHH
Confidence              001222222222223321  13456668888889999999998 54 33322    12444445443211  112332


Q ss_pred             cc-----cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          369 GL-----KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       369 ~l-----~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+     +|+.+...                       ..+.|||+++..++++|++++++++++
T Consensus       296 ~l~~~~~~gi~~~~~-----------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         296 EAIERRGEGVLFYAW-----------------------GEGGVRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             HHHHhhhCCEEEEec-----------------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence            22     35554321                       117899999999999999999998865

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=9.1e-25  Score=214.91  Aligned_cols=314  Identities=14%  Similarity=0.099  Sum_probs=219.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+.|+.+.+. .+++.+.+++.+......++|.           ....++++.++++++++++++++|+|+++++.++
T Consensus        30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~   98 (357)
T PRK14809         30 DDLVKLSSNENPHGPSPAAVEAIREAAERVHSYPK-----------ASHADLTAALADRWDVSPEQVWLANGGDGALDYL   98 (357)
T ss_pred             cceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCC-----------CCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence            456788877665 6778889998887654322222           1245899999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++++.    ++|+.|+++.+.|..+.......   |..++.++.+.  +..+|++++++.+ +++++|++++++||||.+
T Consensus        99 ~~~~~----~~gd~V~v~~P~y~~~~~~~~~~---g~~~~~~~l~~~~~~~~~~~~~~~~~-~~~k~i~l~~p~NPTG~~  170 (357)
T PRK14809         99 ARAML----DPGDTVLVPDPGFAYYGMSARYH---HGEVREYPVSKADDFEQTADTVLDAY-DGERIVYLTSPHNPTGSE  170 (357)
T ss_pred             HHHhc----CCCCEEEEeCCChHHHHHHHHHc---CCeEEEEecccCcCCCcCHHHHHHhh-cCCcEEEEeCCCCCCCcC
Confidence            99888    89999999999988776655444   88998888753  3467788887765 467899999999999999


Q ss_pred             cChHHHHHHHHhc--CCcEEEehhhhcCCCc---cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccC
Q 040741          213 QPMEEIGQICKEF--KIPFHTDAAQALGKIP---VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       213 ~~l~~i~~l~~~~--~v~li~D~a~~~g~~~---~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~  284 (457)
                      .+.+++.++++..  +++||+|+++..-...   .. ....+.-+++.|++|.+|.+|  +|+++++++.++++..... 
T Consensus       171 ~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~~~~~~~~~~~~~~~~-  249 (357)
T PRK14809        171 IPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYAVVPEEWADAYARVNT-  249 (357)
T ss_pred             CCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheeeecCHHHHHHHHHhCC-
Confidence            9987777776654  7899999999732211   11 111223477889999888655  8999998876666544321 


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                              ....+.....++..++.. .+.+++..+.+++.++++.+.|.. . .   .. +   .+.++.+.+.  +..
T Consensus       250 --------~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-~---~~-~---~g~f~~~~~~--~~~  309 (357)
T PRK14809        250 --------PFAASELACRAGLAALDD-DEHVERTVETARWAREYIREELDA-P-T---WE-S---AGNFVLAEVG--DAS  309 (357)
T ss_pred             --------CCCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHhcC-c-c---CC-C---CCCEEEEECC--CHH
Confidence                    113344444444344432 223566667777777777777755 2 1   11 1   1334444432  455


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++...+  +||.+.+|..+..                   .++|||+++   +.+++++++++|+++++
T Consensus       310 ~~~~~l~~~gv~v~~g~~f~~-------------------~~~iRls~~---~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        310 AVAEAAQERGVIVRDCTSFGL-------------------PECIRITCG---TREETERAVEVLNEVLA  356 (357)
T ss_pred             HHHHHHHHCCEEEEECccCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence            666655  6999998865421                   169999986   47899999999998764

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.1e-24  Score=215.26  Aligned_cols=319  Identities=17%  Similarity=0.168  Sum_probs=224.3

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T~  129 (457)
                      ..+.|+.+.+. ++++.+.+++.+.+......    ...|.   .....++++.+++++      ++++++|++|+|+++
T Consensus        27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~----~~~Y~---~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~   99 (368)
T PRK03317         27 VPVRLNTNENPYPPSPALVADIAEAVAEAAAG----LNRYP---DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNE   99 (368)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhhhhh----hccCC---CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHH
Confidence            34778777766 68899999999886532111    01111   123466778888887      467889999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNE  208 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~  208 (457)
                      ++.+++.+++    ++|+.|++..+.|+.+...++..   |.+++.++.+.++.+|+++++++++ .++++|++++++||
T Consensus       100 ~l~~~~~~~~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NP  172 (368)
T PRK03317        100 ILQQLLQAFG----GPGRTALGFVPSYSMHPIIARGT---HTEWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNP  172 (368)
T ss_pred             HHHHHHHHhc----CCCCEEEEeCCChHHHHHHHHhc---CCeeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCC
Confidence            9999999998    89999999999998888776654   8888888776667789999999987 46788999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCC---c--ccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCccccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---P--VDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEP  280 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~--~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~  280 (457)
                      +|.+.+.+++.++++.+++++|+|++|+....   +  ... ......+++.|++|.+|.+|  +|+++++++.++++..
T Consensus       173 tG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRiG~~~~~~~~~~~l~~  252 (368)
T PRK03317        173 TGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRLGYLAAAPAVVDALRL  252 (368)
T ss_pred             CCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhhhhhhCCHHHHHHHHh
Confidence            99999999999999999999999999974211   1  111 11122366779999887555  8999998776665543


Q ss_pred             cccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ....         ...+.....++..+++.. +.+.+..++++++++.+.+.|++ . ++.+..+ .   .+++.+ ...
T Consensus       253 ~~~~---------~~~s~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---~~~~~~-~~~  315 (368)
T PRK03317        253 VRLP---------YHLSAVTQAAARAALRHA-DELLASVAALRAERDRVVAWLRE-L-GLRVAPS-D---ANFVLF-GRF  315 (368)
T ss_pred             cCCC---------CCCCHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCEeCCC-C---CcEEEE-ecc
Confidence            2211         134445555555555543 23444556677888888888888 4 6665442 1   222222 121


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .+...+...+  +||.+.+..                 .     .+++||+++   +.+++++++++++++++
T Consensus       316 ~~~~~~~~~l~~~Gv~v~~~~-----------------~-----~~~iRi~~~---~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        316 ADRHAVWQGLLDRGVLIRDVG-----------------I-----PGWLRVTIG---TPEENDAFLAALAEVLA  363 (368)
T ss_pred             CCHHHHHHHHHHCCEEEEeCC-----------------C-----CCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence            2345555555  688876421                 1     179999986   57899999999998875

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.94  E-value=5.6e-25  Score=217.10  Aligned_cols=345  Identities=17%  Similarity=0.167  Sum_probs=238.4

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ...|-| .++.+.+++.+++++...+.+.|  |.|+.+.|......++...-+.++..++||++..++-.-+ |+.|+..
T Consensus        49 ~~~l~L-iasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~lf~a~~anvqp~S-g~~An~~  126 (493)
T PRK13580         49 RSSLKL-IASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKELFGAEHAYVQPHS-GADANLV  126 (493)
T ss_pred             hcCceE-ecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHHhCCCcccccCCC-cHHHHHH
Confidence            343444 45667899999999999988866  5666544332223334444478888999999876666555 7778999


Q ss_pred             HHHHhhhhhcCC-------------------------------CCEEEEcCCCCcchHHH---HHHHHhcCcEEEEEeCC
Q 040741          134 SIKGVMHFYKDK-------------------------------KRHVITTQTEHKCVLDS---CRHLQQEGFEITYLPVG  179 (457)
Q Consensus       134 al~~~~~~~~~~-------------------------------g~~vi~~~~~h~~~~~~---~~~~~~~G~~v~~v~~~  179 (457)
                      ++.+++    +|                               ||+|+..+..|......   .... ...+++...+++
T Consensus       127 v~~all----~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n~~-~~~~~~~~y~vd  201 (493)
T PRK13580        127 AFWAIL----AHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPNIS-GKMFHQRSYGVD  201 (493)
T ss_pred             HHHHHh----cccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccchh-hheeeeEecccC
Confidence            999988    44                               78998776665443221   1111 112566667777


Q ss_pred             -CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC------CCcccEE
Q 040741          180 -ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE------KWNVSLM  252 (457)
Q Consensus       180 -~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~------~~~~Di~  252 (457)
                       .++.+|++++++.+++++.+|++++.++. |...|+++|.++|++||+++++|+||++|.+..+..      ..++|++
T Consensus       202 ~~~g~iD~d~l~~~~~~~~plvii~g~S~~-~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~v  280 (493)
T PRK13580        202 PDTGLLDYDEIAALAREFKPLILVAGYSAY-PRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIV  280 (493)
T ss_pred             cccCccCHHHHHHHHhhcCCEEEEeCcccc-CCCcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEE
Confidence             56889999999999999999999999887 558899999999999999999999999987764431      1268999


Q ss_pred             Eecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHH
Q 040741          253 SLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLL  330 (457)
Q Consensus       253 ~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~  330 (457)
                      ++|+|| ++||.| |+++++++..+.+....       .+..+++.++.+++...++..+.. +.....+++.+++++|+
T Consensus       281 tgT~hKaL~GP~G-G~I~~~~~l~~~L~~a~-------P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~Na~~La  352 (493)
T PRK13580        281 TTTTHKTLRGPRG-GLVLAKKEYADAVDKGC-------PLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVDNARALA  352 (493)
T ss_pred             EeCChhhccCCCe-EEEEecHHHHHHHhhCC-------CcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            999999 558986 99999887655552111       122335555567766667776653 35678999999999999


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      +.|.+  .|+.+.....  -..++.+.+...  ....+...|  .||.+..-...+.+             ...+....|
T Consensus       353 ~~L~~--~G~~vv~ggT--dshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp-------------~g~~~~srL  415 (493)
T PRK13580        353 EGFLK--RGARLVTGGT--DNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDP-------------NGAWYTSGI  415 (493)
T ss_pred             HHHHh--cCCCccCCCC--CCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCC-------------CCCCCCceE
Confidence            99998  4777653211  134555555432  223444455  57776543221110             001224789


Q ss_pred             EEecCCC----CCHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRF----TTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       407 Ri~~~~~----~t~edid~~~~~l~~~~~~~  433 (457)
                      ||+.+..    ++++|++++++.|.++++..
T Consensus       416 RIg~~A~ttrg~teedi~~iad~l~~~l~~~  446 (493)
T PRK13580        416 RLGTPALTTLGMGSDEMDEVAELIVKVLSNT  446 (493)
T ss_pred             EeccchhhhcCCCHHHHHHHHHHHHHHHHhh
Confidence            9998884    46999999999999988754

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=1.4e-24  Score=214.70  Aligned_cols=320  Identities=16%  Similarity=0.114  Sum_probs=218.5

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEEeCCh
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--------ASPKEIIFTSGA  127 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~~t~g~  127 (457)
                      +.+.|+.+.+. ++++.+.+++.+.+.....  .   ..|.   .....++++.++++++        +++++|++|+|+
T Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~Y~---~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga  100 (374)
T PRK02610         29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIE--S---NRYP---DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGS  100 (374)
T ss_pred             ceeEecCCCCCCCCCHHHHHHHHHHHhhccc--c---cCCC---CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCCh
Confidence            45778877776 6889999999887653110  0   0111   1245678888888887        778899999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCC-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcC----CCceEEE
Q 040741          128 TESNNVSIKGVMHFYKDKKR-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIR----PDTGLIS  201 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~----~~t~li~  201 (457)
                      ++++..++.+++    .+++ .|++..+.|..+...++..   |.+++.++.+. ++.+|+++++++++    .++++|+
T Consensus       101 ~~al~~~~~~~~----~~g~~~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~  173 (374)
T PRK02610        101 DELIRSLLIATC----LGGEGSILVAEPTFSMYGILAQTL---GIPVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVF  173 (374)
T ss_pred             HHHHHHHHHHHc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEE
Confidence            999998888776    5664 8999999999888877666   99999999864 46799999999886    4789999


Q ss_pred             EeccccccccccChHHHHHHHHh-cCCcEEEehhhhcCCCc---ccCCCCcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741          202 VMAVNNEIGVIQPMEEIGQICKE-FKIPFHTDAAQALGKIP---VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPR  275 (457)
Q Consensus       202 i~~~~~~~G~~~~l~~i~~l~~~-~~v~li~D~a~~~g~~~---~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~  275 (457)
                      +++++||||.+.+.+++.++.+- ++++||+|+++.-....   ..+.....-+++.|++|.+|.+|  +|+++.+++.+
T Consensus       174 l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~GlRiG~~v~~~~l~  253 (374)
T PRK02610        174 VVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAHRVGYAIGHPELI  253 (374)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCcccceeeeecCHHHH
Confidence            99999999999997666555431 48999999998632111   11111122377889999887666  99999887766


Q ss_pred             ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                      +++......+         ..+.....++..+++......+.+. +..+.++.+.+.|.+ ++++.+..  ..  ..++.
T Consensus       254 ~~l~~~~~~~---------~~~~~~q~a~~~~l~~~~~~~~~~~-~~~~~r~~l~~~L~~-~~~~~~~p--~~--g~f~~  318 (374)
T PRK02610        254 AVLEKVRLPY---------NLPSFSQLAAQLALEHRQELLAAIP-EILQERDRLYQALQE-LPQLRVWP--SA--ANFLY  318 (374)
T ss_pred             HHHHHhcCCC---------CCCHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHHHHHHh-CCCcEeCC--Cc--ceEEE
Confidence            6554433211         2344444444455543322233333 334446677788877 77766532  11  34445


Q ss_pred             EEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          356 LSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       356 ~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.++. .+...+...+  +||.+..+                        .+++||+++.   .+++++++++|+++++.
T Consensus       319 ~~l~~~~~~~~~~~~l~~~gi~v~~~------------------------~~~lRls~~~---~~~~~~~l~~l~~~l~~  371 (374)
T PRK02610        319 LRLSQDAALAALHQALKAQGTLVRHT------------------------GGGLRITIGT---PEENQRTLERLQAALTQ  371 (374)
T ss_pred             EeCCCCCCHHHHHHHHHHCCEEEEeC------------------------CCeEEEeCCC---HHHHHHHHHHHHHHHhh
Confidence            55543 3456666665  58777532                        1689999874   57889999999988754


Q ss_pred             H
Q 040741          433 L  433 (457)
Q Consensus       433 ~  433 (457)
                      +
T Consensus       372 ~  372 (374)
T PRK02610        372 L  372 (374)
T ss_pred             c
Confidence            3

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.94  E-value=2.7e-24  Score=216.25  Aligned_cols=343  Identities=14%  Similarity=0.149  Sum_probs=233.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccC--CCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEE---eCChHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYG--NPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIF---TSGATESNNVSIK  136 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~---t~g~T~a~~~al~  136 (457)
                      .++.+.+++.+++++...+.+.|+  .|.++.+. |....+.+++ ++++..++|+.+.+...+   ..+|+.||..++.
T Consensus        40 iasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~-G~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~  118 (475)
T PLN03226         40 IASENFTSRAVMEALGSCLTNKYSEGLPGARYYG-GNEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYT  118 (475)
T ss_pred             ecCCccCCHHHHHHHhhHHhccccCCCCCCcCcC-CChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHH
Confidence            356778999999999999976664  55553332 3333333333 556788888987665544   4779999999999


Q ss_pred             HhhhhhcCCCCEEEEcCC------CCcchHHHHHHHHhcCc--EEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccc
Q 040741          137 GVMHFYKDKKRHVITTQT------EHKCVLDSCRHLQQEGF--EITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVN  206 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~------~h~~~~~~~~~~~~~G~--~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~  206 (457)
                      +++    ++||.|+..+.      .|.+....++.. ..+.  ++..+.++ .+|.+|+++|++++. .++++|++.  .
T Consensus       119 aL~----~pgD~Il~~d~~~gGhl~H~~~~~g~~~s-~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~~pklIv~~--~  191 (475)
T PLN03226        119 ALL----QPHDRIMGLDLPHGGHLSHGYQTDGKKIS-ATSIYFESMPYRLDESTGLIDYDKLEKKAMLFRPKLIIAG--A  191 (475)
T ss_pred             HhC----CCCCEEEECCCCcCcchhhhhhhcccccc-cceEEEEeeeeeecCCCCCcCHHHHHHHHhhcCCeEEEEe--c
Confidence            999    89999998553      333322222211 1121  12233444 568899999999886 467766552  2


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC---CcccEEEeccccc-cCCCCceEEEEecCCCcccccc-
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK---WNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPL-  281 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~---~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~-  281 (457)
                      +.+|...|+++|.++|+++|+++++|+||++|....+...   .++|++++|+||+ .||.| |+++++++....+.+. 
T Consensus       192 S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~~~~~~~~~~~~g~  270 (475)
T PLN03226        192 SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIFFRKGPKPPKGQGE  270 (475)
T ss_pred             CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEEEchhhcccccCCC
Confidence            3478999999999999999999999999999887654321   2689999999995 58998 8888887644222111 


Q ss_pred             --------ccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          282 --------INGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       282 --------~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                              ........ ...+++++..++++.++++++.. +++++.++..++++++++.|.+  .|+.++.....  ..
T Consensus       271 ~~~~d~~~~i~~a~~~-~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~--~G~~l~~~~t~--~h  345 (475)
T PLN03226        271 GAVYDYEDKINFAVFP-GLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS--KGYKLVTGGTD--NH  345 (475)
T ss_pred             ccHHHHHHHhccccCC-ccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh--CCCEEEcCCCC--CC
Confidence                    00000001 13456888899999999999875 5788899999999999999999  68888864332  34


Q ss_pred             eEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe----cCCCCCHHHHHHHHH
Q 040741          353 NLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG----IGRFTTEAEVDRAIE  424 (457)
Q Consensus       353 ~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~----~~~~~t~edid~~~~  424 (457)
                      ++.+.+.  ++++.++...|  .+|.+..+.....              ........||++    .++.++++|++++++
T Consensus       346 i~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~--------------~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~  411 (475)
T PLN03226        346 LVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGD--------------SSALVPGGVRIGTPAMTSRGLVEKDFEKVAE  411 (475)
T ss_pred             EEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCC--------------cccCCCCCcccCcHHHHHCCCCHHHHHHHHH
Confidence            4445543  45565565555  5777765431100              012233678884    445567899999999


Q ss_pred             HHHHHHHHH
Q 040741          425 LTVKQVEKL  433 (457)
Q Consensus       425 ~l~~~~~~~  433 (457)
                      .|.++++..
T Consensus       412 ~i~~~~~~~  420 (475)
T PLN03226        412 FLHRAVTIA  420 (475)
T ss_pred             HHHHHHHHh
Confidence            999999854

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.94  E-value=5e-25  Score=216.16  Aligned_cols=309  Identities=14%  Similarity=0.118  Sum_probs=216.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++...+....+|+.++++.+.+  ++++++||++|+..++.+++    ++||+|+++++.|.+....+. .+...|+++
T Consensus        55 Y~r~~npt~~~Le~~iA~le~~~--~~~~~~sG~~Ai~~~l~all----~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~v  128 (394)
T PRK09028         55 YGRRGTPTHFAFQAAIVELEGGA--GTALYPSGAAAISNALLSFL----KAGDHLLMVDSCYEPTRDLCDKILKGFGIET  128 (394)
T ss_pred             ecCCCCchHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHhhhhcceEE
Confidence            34333456778999999998865  49999999999999999987    899999999999977776443 345568898


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      .+++.+     |.++++++++++|++|++++++||+|.+.|+++|+++||++|+++++|++++.+. .....++|+|+++
T Consensus       129 ~~v~~~-----~~e~l~~~l~~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~-~~~Pl~~GaDivv  202 (394)
T PRK09028        129 TYYDPM-----IGEGIRELIRPNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPI-NSRPFEMGVDISI  202 (394)
T ss_pred             EEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccc-cCCccccCceEEE
Confidence            887644     5688999999999999999999999999999999999999999999999999874 3444567899999


Q ss_pred             ecccccc-CCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          254 LSGHKIY-GPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       254 ~s~~K~~-g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      .|.+|++ |+.+  .|+++.+++..+++.....       ....+.++..+.-+...+    ..+.-++++..+++..+.
T Consensus       203 ~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~-------~~G~~~~p~~a~l~~rgl----~TL~lR~~~~~~na~~la  271 (394)
T PRK09028        203 QAATKYIVGHSDVMLGTATANEKHWDQLREHSY-------LMGQCTSPDDVYLAMRGL----RTLGVRLAQHEKNALKVA  271 (394)
T ss_pred             EeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH-------hcCCCCCHHHHHHHHccc----CcHHHHHHHHHHHHHHHH
Confidence            9999965 4432  5666555433333322211       111244444444332222    247888899999999999


Q ss_pred             HHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc---cchHHHhccc--CeEecccCccCCC----CCC
Q 040741          331 NGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV---EGESLLMGLK--EVAVSSGSACTSA----SLE  387 (457)
Q Consensus       331 ~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~---~~~~~~~~l~--~i~~~~g~~~~~~----~~~  387 (457)
                      +.|++ .|.+. ++-+  +.           ...++++.|.+++-   ....++..|+  .++++-|...+..    +..
T Consensus       272 ~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~  350 (394)
T PRK09028        272 NWLAT-RPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGDPKAVTALVEGMQHFKMGFSWGGFESLILGVFGIN  350 (394)
T ss_pred             HHHhc-CCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCCHHHHHHHHHhCCcceEecccCCCcceeECCCCcC
Confidence            99999 77763 3221  11           13577888888621   2245666664  5556666543321    111


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .....+..|+.    ++.|||+++.    ||.|.+++.|+++++..+.
T Consensus       351 ~~~~~~~~~~~----~~liR~svGl----Ed~~dLi~Dl~~Al~~~~~  390 (394)
T PRK09028        351 KLRTATNWDFS----KPLIRLHIGL----EDVDDLIADLEAGFERYNA  390 (394)
T ss_pred             ccCchhhhcCC----CCeEEEEeCc----CCHHHHHHHHHHHHHHHHH
Confidence            00011223333    3799999997    7888889999988887653

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.94  E-value=2.1e-25  Score=220.73  Aligned_cols=306  Identities=15%  Similarity=0.145  Sum_probs=207.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|+....+...++++.++++.|.+.  .+++++|+.|+.+++. +.    ++||+|+++.+.|++....+. .++..|++
T Consensus        47 ~y~r~~~p~~~~le~~lA~l~g~~~--~v~~~sG~~ai~~~l~-~l----~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~  119 (390)
T PRK08064         47 DYSRSGNPTREALEDIIAELEGGTK--GFAFASGMAAISTAFL-LL----SKGDHVLISEDVYGGTYRMITEVLSRFGIE  119 (390)
T ss_pred             cccCCCChhHHHHHHHHHHHhCCCC--eEEECCHHHHHHHHHH-Hh----CCCCEEEEccCccchHHHHHHHHHHHcCCE
Confidence            3444555788999999999999874  5566778889887775 55    789999999999997765543 44667999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++..     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... ++++|++
T Consensus       120 v~~v~~~-----d~~~l~~~l~~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~~~-~~g~Div  193 (390)
T PRK08064        120 HTFVDMT-----NLEEVAQNIKPNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQKPL-DLGADVV  193 (390)
T ss_pred             EEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCcccccCch-hhCCcEE
Confidence            9999875     799999999999999999999999999999999999999999999999999876542222 4578999


Q ss_pred             Eecccccc-CCCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIY-GPKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~-g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|+||++ |+.|  .|++++++ +..+++.+....++.       ..++.....   ++. ....+..++++..+++..
T Consensus       194 v~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g~-------~~~~~~a~l---~~~-gl~tl~~R~~~~~~~a~~  262 (390)
T PRK08064        194 LHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFGA-------VLGVQDCWL---VLR-GLKTLHVRLEHSSETANK  262 (390)
T ss_pred             EeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcCC-------CCCHHHHHH---HHc-ccCcHHHHHHHHHHHHHH
Confidence            99999965 5655  48888764 344555544433221       222222221   111 112366788888888888


Q ss_pred             HHHHHhhcCCCe-EEeCC-------------CCCcccceEEEEEcccc-chHHHhccc--CeEecccCccC----CCCCC
Q 040741          329 LLNGIKEKLDGV-VVNGS-------------MERRYIGNLNLSFAYVE-GESLLMGLK--EVAVSSGSACT----SASLE  387 (457)
Q Consensus       329 l~~~l~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~----~~~~~  387 (457)
                      +.+.|++ .|.+ +++-+             .....++++.|.+.+.+ ...+++.++  .++++.|...+    +..+.
T Consensus       263 la~~L~~-~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~  341 (390)
T PRK08064        263 IALYLQE-HPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQSEEAVRQFVSHVKLPVFAVSLGAVESILSYPAKMS  341 (390)
T ss_pred             HHHHHhc-CCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECCHHHHHHHHHhCCcceEcccCCCCcceeECCcccc
Confidence            9898888 6654 22211             11235677777775422 223444442  34677775433    11111


Q ss_pred             ----hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          388 ----PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       388 ----~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                          +.......|+.+    +.||+|++...+++.|+.+.++|++
T Consensus       342 h~~~~~~~~~~~gi~~----~liR~SvGle~~~dli~dl~~Al~~  382 (390)
T PRK08064        342 HAAMPKEERDERGITD----GLLRLSVGLENVDDLIADFEQALSY  382 (390)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHHh
Confidence                122233455543    8999999985555555554444443

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.94  E-value=1.8e-24  Score=195.44  Aligned_cols=354  Identities=19%  Similarity=0.227  Sum_probs=268.1

Q ss_pred             eecccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccch-hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           48 TLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLF-GWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        48 ~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      .++.+...++.|||+-++-+..|..+.....+.....|+.-.-+.+.. ...+.+.-+.+-.+++-++|+.+.+++.+.+
T Consensus        22 lr~~f~lp~~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdklApLiGA~~~Evvv~dt  101 (407)
T COG3844          22 LRDRFALPGGVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKLAPLIGARAGEVVVTDT  101 (407)
T ss_pred             hHhhccCCCCeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHhhhhhcCCCCceEEeCC
Confidence            445566778999999999998886666666665555454333223321 1234467778899999999999999999998


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      .+--++-.+.+....  .+|+.||+++. ++++-...+.-+ ...|..     .+-.+.+.+.++++++++++.+|++++
T Consensus       102 ts~nl~k~L~aalr~--~~~r~vIv~E~~~fpTdly~a~g~~~~~~~~-----~~~~~~~~P~~~~~~~~dd~AvV~L~~  174 (407)
T COG3844         102 TSINLFKVLAAALRP--QEGRRVIVSEGDNFPTDLYIAEGLADLLGIG-----YDLEGVIAPRALEEAITDDVAVVLLSH  174 (407)
T ss_pred             cchHHHHHHHHHhcc--CCCceEEeecCCCCCcchhhhcchhhhhccc-----ccceeeeChHHHHHhhccceEEEEecc
Confidence            887776666655532  45788877664 455555443321 111221     223344577899999999999999999


Q ss_pred             cccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc--cCCCCceEEEEecCCCccccccc
Q 040741          205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI--YGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~--~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      +++.||...++.+|-.+++++|+++..|-||+.|.+|.++...++|+-+.|.+|+  .||.+.+++++.++..++..+..
T Consensus       175 V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~l  254 (407)
T COG3844         175 VNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPL  254 (407)
T ss_pred             ccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeecccCCCeeeeeeceeccCCCCCceeEEecccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999994  46777999999999888877777


Q ss_pred             cCCcc----------------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCC--CeEEe
Q 040741          283 NGGGQ----------------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLD--GVVVN  343 (457)
Q Consensus       283 ~~~~~----------------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~  343 (457)
                      .||..                .++|..|++++..++++..+++.+.+ .+.+.+++...+.+++.+.++..-+  ++++.
T Consensus       255 sgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~  334 (407)
T COG3844         255 SGWWGHARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYYGLTLV  334 (407)
T ss_pred             ccccCCCCcchhhhccCcCccccceeeCCcchhhhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEe
Confidence            66532                24667889999999999999998876 5899999999999999999887433  67777


Q ss_pred             CCCC-CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHH
Q 040741          344 GSME-RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEV  419 (457)
Q Consensus       344 ~~~~-~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edi  419 (457)
                      .+.+ ..++.-+  ++....+.++++.|  +||...                       ....+.|||+++. |++.+||
T Consensus       335 tPr~~~~rGsqv--S~~hp~~~~V~qaLi~rGVigD-----------------------~R~P~vlRfgftPlY~~~~DV  389 (407)
T COG3844         335 TPRAHEERGSQV--SLYHPHGYQVMQALIDRGVIGD-----------------------FREPDVLRFGFTPLYVSFVDV  389 (407)
T ss_pred             ccchhhhcccee--eEecCcHHHHHHHHHHcCcccc-----------------------ccCCCeeeecCccceechhHH
Confidence            6643 2334444  44445678888887  565431                       1223899999976 6899999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      =..++.|.++++.+
T Consensus       390 w~AV~~L~evL~t~  403 (407)
T COG3844         390 WDAVDALEEVLDTL  403 (407)
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998765

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.94  E-value=6.5e-25  Score=216.70  Aligned_cols=285  Identities=20%  Similarity=0.260  Sum_probs=213.4

Q ss_pred             HHHHHHHHHHHHHhC------CCCC-cEEEeCChHHHHHHHHHHh-hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741          101 VAVETARSQIADLIG------ASPK-EIIFTSGATESNNVSIKGV-MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus       101 ~~~~~~~~~la~~~g------~~~~-~i~~t~g~T~a~~~al~~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      ....++++.++++++      .+++ ++++++|+.+++..++..+ .    ++++.|+++.+.|+.+...++..   |.+
T Consensus        44 ~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~~----~~~~~vlv~~P~y~~~~~~~~~~---g~~  116 (363)
T PF00155_consen   44 QGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLKI----NPGDTVLVPDPCYPSYIEAARLL---GAE  116 (363)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHHS----STTSEEEEEESSSTHHHHHHHHT---TSE
T ss_pred             hhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcccc----cccccceecCCcccccccccccc---Cce
Confidence            467889999999998      6677 7999998888888877777 4    78999999999999999888777   999


Q ss_pred             EEEEeCC--CCCCCCHHHHHHhcCC------CceEEEEeccccccccccChHH---HHHHHHhcCCcEEEehhhhcCCCc
Q 040741          173 ITYLPVG--ADGIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQPMEE---IGQICKEFKIPFHTDAAQALGKIP  241 (457)
Q Consensus       173 v~~v~~~--~~~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~l~~---i~~l~~~~~v~li~D~a~~~g~~~  241 (457)
                      ++.++.+  .++.+|++++++.+++      ++++|++++++||||...+.++   |+++|++||+++++|++|+.....
T Consensus       117 ~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~~~  196 (363)
T PF00155_consen  117 VIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLIFG  196 (363)
T ss_dssp             EEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGBSS
T ss_pred             eeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccccC
Confidence            9998864  6778999999999987      6789999999999999998555   555599999999999999854332


Q ss_pred             --------ccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH
Q 040741          242 --------VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA  311 (457)
Q Consensus       242 --------~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~  311 (457)
                              ..+......+++.|++|.+|.+|  +|+++++++.++.+......+         ..+.....++..++...
T Consensus       197 ~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~~~l~~~  267 (363)
T PF00155_consen  197 DPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGLRVGYIVAPPELIERLRRFQRSG---------LSSSPMQAAAAAALSDP  267 (363)
T ss_dssp             SSHTHHHHGHHTTTSTEEEEEESTTTTTSGGGTEEEEEEEHHHHHHHHHHHHHT---------TSSHHHHHHHHHHHHHH
T ss_pred             CCccCcccccccccccceeeeeccccccccccccccccchhhhhhhhhhccccc---------cccchhhHHHHHhhhcc
Confidence                    11222222588999999888666  899999876655555433221         22444444444444333


Q ss_pred             H---HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--c-CeEecccCccCCCC
Q 040741          312 K---KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--K-EVAVSSGSACTSAS  385 (457)
Q Consensus       312 ~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~i~~~~g~~~~~~~  385 (457)
                      .   +.+++..++++++++++.+.|++ . ++.+..++.   +.++...+...+..++.+.|  + ||.+.+|..+..  
T Consensus       268 ~~~~~~~~~~~~~l~~~~~~l~~~L~~-~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~~~--  340 (363)
T PF00155_consen  268 ELVEKWLEELRERLRENRDLLREALEE-I-GITVLPPEA---GFFLWVRLDPNDAEELAQELLEEYGILVRPGSYFGV--  340 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TSEEEHHSB---SSEEEEEESHHHHHHHHHHHHHHHTEEEEEGGGGTS--
T ss_pred             cccccccccchhhHHHHHHHHHHHHHH-h-hhheeeccC---ccEEEEEcccchHHHHHHHHHHhCCEEEEecCCCCC--
Confidence            3   26788999999999999999999 5 888776432   33333444433456777766  4 999999875432  


Q ss_pred             CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       386 ~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                                       .++|||++ ...++|++++++++|
T Consensus       341 -----------------~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  341 -----------------PGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             -----------------TTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             -----------------CCEEEEEe-ccCCHHHHHHHHhhC
Confidence                             38999999 567899999999876

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=6.9e-25  Score=215.41  Aligned_cols=280  Identities=17%  Similarity=0.170  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD  181 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~  181 (457)
                      ..++++.+++++|+++++|++|+|+++++.+++.++.    ++| ++|++..+.|..+...++..   |.+++.++.+.+
T Consensus        62 ~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~----~~g~d~vlv~~P~y~~y~~~~~~~---g~~v~~v~~~~~  134 (354)
T PRK04635         62 PPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC----EPGQDSIACFGPTYGMYAISAETF---NVGVKALPLTAD  134 (354)
T ss_pred             HHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEEecCCC
Confidence            4678999999999999999999999999999999988    777 89999999998777655554   999999999877


Q ss_pred             CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc-CCcEEEehhhhcCCCcc---cC-CCCcccEEEecc
Q 040741          182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF-KIPFHTDAAQALGKIPV---DV-EKWNVSLMSLSG  256 (457)
Q Consensus       182 ~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~-~v~li~D~a~~~g~~~~---~~-~~~~~Di~~~s~  256 (457)
                      +.+|++.+++ + +++++|++++++||||.+.+.+++.++++.. +++|++|++|.-.....   +. .....-+++.|+
T Consensus       135 ~~~~~~~l~~-~-~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s~~~~~~~~~~~iv~~S~  212 (354)
T PRK04635        135 YQLPLDYIEQ-L-DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYSVADLLASYPNLVVLRTL  212 (354)
T ss_pred             CCCCHHHHHh-c-cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcchHHHHhhCCCEEEEech
Confidence            7889998874 4 6899999999999999999999999998764 79999999986332111   11 111223678899


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      ||.+|.+|  +|+++++++.++.+......+         ..+.+...++.+++... .+.+.+..+++++.++++.+.|
T Consensus       213 SK~~~l~GlRlG~~i~~~~~~~~l~~~~~~~---------~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L  283 (354)
T PRK04635        213 SKAFALAGARCGFTLANEELIEILMRVIAPY---------PVPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAAL  283 (354)
T ss_pred             HHHhhhhHHHHhhhhCCHHHHHHHHhhcCCC---------CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888666  899999887666554432211         23333333333333211 1234556667788889999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                      ++ ++++.+..+ .   .+++.+.++  +...+...+  +||.++.+.   .                ....+++||+++
T Consensus       284 ~~-~~~~~~~~~-~---g~f~~~~~~--~~~~~~~~l~~~gv~v~~~~---~----------------~~~~~~lRis~~  337 (354)
T PRK04635        284 SM-YGGAKVLEG-N---GNYVLAKFD--DVDAVFKALWDAGIVARAYK---D----------------PRLANCIRFSFS  337 (354)
T ss_pred             Hh-CCCceECCC-C---CcEEEEECC--CHHHHHHHHHHCCEEEEECC---C----------------CCCCCeEEEEeC
Confidence            98 766666543 2   334444444  345555555  688886431   0                011379999986


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 040741          412 RFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       412 ~~~t~edid~~~~~l~~~  429 (457)
                         +.+|+++++++|++.
T Consensus       338 ---~~e~~~~l~~al~~~  352 (354)
T PRK04635        338 ---NRAETDKLIGLIRNQ  352 (354)
T ss_pred             ---CHHHHHHHHHHHHHh
Confidence               589999999999753

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.94  E-value=7.7e-25  Score=217.36  Aligned_cols=309  Identities=15%  Similarity=0.163  Sum_probs=219.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++...+...++++.++++.|.+  ++++++||+.|+.+++.++.    ++|++|+++.+.|++...... .+...|+++
T Consensus        58 Y~r~~~p~~~~Le~~iA~~~g~~--~~l~~~sG~~Ai~~al~~ll----~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v  131 (400)
T PRK06234         58 YSRLGNPTSTEVENKLALLEGGE--AAVVAASGMGAISSSLWSAL----KAGDHVVASDTLYGCTFALLNHGLTRYGVEV  131 (400)
T ss_pred             ccCCCCccHHHHHHHHHHHhCCC--cEEEEcCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHhhCCeEE
Confidence            34334467889999999999975  48999999999999998887    899999999999988776543 345669999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++..     |+++++++++++|++|++++++||+|.+.|+++|.++|+++  |+++++|++++.+...... ..+.|+
T Consensus       132 ~~vd~~-----d~e~l~~~i~~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~~~l-~~g~Di  205 (400)
T PRK06234        132 TFVDTS-----NLEEVRNALKANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQRPL-QLGADV  205 (400)
T ss_pred             EEECCC-----CHHHHHHHhccCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcCCch-hhCCcE
Confidence            999865     89999999999999999999999999999999999999997  9999999999876543222 347899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++.|++|++++.|   .|+++++++..++++.....     .......++.....+...+    +.++.++++..+++.+
T Consensus       206 vv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~-----~~~g~~l~p~~a~l~~~~l----~tl~~r~~~~~~na~~  276 (400)
T PRK06234        206 VVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIK-----DMTGSVIGPFEAFLIIRGM----KTLQIRMEKHCKNAMK  276 (400)
T ss_pred             EEeeccccccCCCCceeEEEEecHHHHHHHHHHHHH-----HhcCCCCCHHHHHHHHhcc----CcHHHHHHHHHHHHHH
Confidence            9999999776544   59999887654444321100     0111233333333222222    2456777788889999


Q ss_pred             HHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCC----CC
Q 040741          329 LLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSA----SL  386 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~----~~  386 (457)
                      +.+.|++ .|.+.-+-.+.              ...++++.|.+++-  ....+...|  .+++.+-|...+..    ..
T Consensus       277 ~a~~L~~-~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~  355 (400)
T PRK06234        277 VAKFLES-HPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGVEEGKVVMNNVKLATLAVSLGDAETLIQHPASM  355 (400)
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhCCcceEeccCCCCCceecCCccC
Confidence            9999998 67663221111              13467777777531  124566666  36666667654322    11


Q ss_pred             Ch----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+    .-.....|+.+    +.|||+++.    ||.+.+++.|+++++.+
T Consensus       356 ~~~~~~~~~~~~~gi~~----~l~R~svGl----E~~~dl~~dl~~al~~~  398 (400)
T PRK06234        356 THSPYTAEERKEAGISD----GLVRLSVGL----EDVDDIIADLKQALDLI  398 (400)
T ss_pred             CCCCCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHHHHH
Confidence            11    11234566654    899999997    78888888888888754

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=3.4e-24  Score=210.32  Aligned_cols=315  Identities=16%  Similarity=0.137  Sum_probs=222.0

Q ss_pred             cEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           58 PLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        58 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+.|+.+.+. .+++.+.+++.+.+.....+|.           ....++|+.++++++++++++++|+|+++++.+++.
T Consensus        21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~Y~~-----------~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~   89 (354)
T PRK06358         21 ILDFSANINPLGVPESLKQAITENLDKLVEYPD-----------PDYLELRKRIASFEQLDLENVILGNGATELIFNIVK   89 (354)
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHHHhhhcCCC-----------ccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHH
Confidence            4566665444 5688999999887654322221           235789999999999999999999999999999888


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ++.     + +.|++..+.|+.+...++..   |.+++.++.+.+  ..+| +++++.+..+++++++++++||||.+.+
T Consensus        90 ~~~-----~-~~v~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d-~~~~~~~~~~~~~v~~~~P~NPtG~~~~  159 (354)
T PRK06358         90 VTK-----P-KKVLILAPTFAEYERALKAF---DAEIEYAELTEETNFAAN-EIVLEEIKEEIDLVFLCNPNNPTGQLIS  159 (354)
T ss_pred             HhC-----C-CcEEEecCChHHHHHHHHHc---CCeeEEEeCccccCCCcc-HHHHHhhccCCCEEEEeCCCCCCCCccC
Confidence            742     3 47889999998887766555   999999998643  3678 6666677778999999999999999998


Q ss_pred             ---hHHHHHHHHhcCCcEEEehhhhcCCC---c---c-cCCCCcccEEEeccccccCCCC--ceEEEEec-CCCcccccc
Q 040741          215 ---MEEIGQICKEFKIPFHTDAAQALGKI---P---V-DVEKWNVSLMSLSGHKIYGPKG--VGALYMRR-RPRIRVEPL  281 (457)
Q Consensus       215 ---l~~i~~l~~~~~v~li~D~a~~~g~~---~---~-~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~~~~~~~~  281 (457)
                         +++|.++|++|++++++|+++.--..   +   + .....+.-+++.|++|.+|.+|  +||+++.+ ...+++...
T Consensus       160 ~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~~~~~~~~  239 (354)
T PRK06358        160 KEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNLAEKLLQM  239 (354)
T ss_pred             HHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHHHHHHHHh
Confidence               77888899999999999999863211   0   1 1112223478899999888555  99998853 444444332


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      ..         ..+.+.....++..+++. ...+++..+.+++.++++.+.|++ ++++.+..+ .   ++++.+.++  
T Consensus       240 ~~---------~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~-~---g~f~~~~~~--  302 (354)
T PRK06358        240 RE---------PWSINTFADLAGQTLLDD-KEYIKKTIQWIKEEKDFLYNGLSE-FKGIKVYKP-S---VNFIFFKLE--  302 (354)
T ss_pred             CC---------CCcchHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHhc-CCCcEEcCC-c---ceEEEEEcC--
Confidence            21         123444444444444431 123567778888899999999988 777766543 2   344444443  


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +...+...+  +||.+.+|..+..                 ...++|||+++   ++++.++++++|++++
T Consensus       303 ~~~~~~~~l~~~gI~v~~~~~f~~-----------------~~~~~iRls~~---~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        303 KPIDLRKELLKKGILIRSCSNYRG-----------------LDENYYRVAVK---SREDNKKLLKALEVIL  353 (354)
T ss_pred             chHHHHHHHHHCCeEEEECCCCCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence            345666655  7999998865411                 12378999998   4899999999998765

>PRK06460 hypothetical protein; Provisional

Probab=99.94  E-value=1e-24  Score=214.67  Aligned_cols=309  Identities=14%  Similarity=0.118  Sum_probs=210.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~  171 (457)
                      +.|+....+...++++.++++.|.++  .+..++|++|+..++.++.    ++||+|+++.+.|...... ...++..|.
T Consensus        37 ~~y~r~~~p~~~~L~~~lA~l~g~~~--~v~~~sG~~ai~~~l~al~----~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~  110 (376)
T PRK06460         37 YRYSREANPTVLELTKKIVELENAEM--GVAFSSGMGAISTTALALL----KPGNSVLVHRDMFGRSYRFFTDYLKNWGV  110 (376)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHh----CCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence            45566666889999999999999865  3444667899999999887    8999999988776544332 234455699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      +++.++.+     +.+.+++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.. ......+.|+
T Consensus       111 ~v~~~~~~-----~~~~l~~~~~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-~~~l~~~~di  184 (376)
T PRK06460        111 NVDASNPG-----SDNIIEKAKSKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-QKPLELGADI  184 (376)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-CChhhcCCCE
Confidence            99888765     33456666778999999999999999999999999999999999999999986522 1112346899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++.|++|++++.+   +|+++.+++.++++.......+       .+.++.....   +++ ..+.++.++++..+++++
T Consensus       185 vv~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g-------~~~~~~~a~~---~l~-~~~~l~~r~~~~~~n~~~  253 (376)
T PRK06460        185 VVHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLG-------TSLDPHAAYL---TLR-GIKTLKIRMDVINRNAEQ  253 (376)
T ss_pred             EEeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcC-------CCCCHHHHHH---HHh-chhhHHHHHHHHHHHHHH
Confidence            9999999765432   7888887766555543332111       1222222111   111 123467788889999999


Q ss_pred             HHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCCC
Q 040741          329 LLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SASL  386 (457)
Q Consensus       329 l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~  386 (457)
                      +.+.|++ .|.+. ++-+  +.           ...++++.|.+.+-  ....++..|+  .++++-|...+    +...
T Consensus       254 l~~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~~~~~~~~~~l~~~~~~~s~Gg~~sl~~~p~~~  332 (376)
T PRK06460        254 IAEFLEG-HPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQESALKVMKSLKLIIPAQTLGGVNSVISHPATM  332 (376)
T ss_pred             HHHHHHc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcHHHHHHHHHhCCcceeccCCCCCceEEeCcccc
Confidence            9999998 67763 2221  11           23577887887531  2345555553  34444453322    2111


Q ss_pred             Ch----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+    .-.....|+.+    +.|||+++.    ||.|.+++.|+++++.+
T Consensus       333 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~  375 (376)
T PRK06460        333 SHRTLSLEERKIVGITD----SLLRLSVGI----EDVNDLIEDLDRALSTL  375 (376)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            11    12233456654    899999996    78999999999988754

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=1.4e-24  Score=216.17  Aligned_cols=316  Identities=15%  Similarity=0.170  Sum_probs=214.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHH-HHHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSC-RHLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~G~  171 (457)
                      +.|+....+....+++.++++.|.+  ..+++++|+.|+.+++.++.    ++||+||++...|.+....+ ..++..|+
T Consensus        61 ~~Y~r~~~pt~~~le~~la~l~g~~--~~v~fsSG~~Ai~~al~~ll----~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi  134 (437)
T PRK05613         61 PIYSRLTNPTVEALENRIASLEGGV--HAVAFASGQAAETAAILNLA----GAGDHIVTSPRLYGGTETLFLVTLNRLGI  134 (437)
T ss_pred             ceeeCccChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhc----CCCCEEEECCCccHHHHHHHHHHHHhcCe
Confidence            3445555578999999999999985  36666777799999898887    89999999999999885433 34566799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++ +.   .|+++++++++++|++|+++++.|++|.+.|+++|+++|+++|+++++|++++.|.. ....++++|+
T Consensus       135 ~v~~vd-~~---~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~-~~p~~~GaDi  209 (437)
T PRK05613        135 EVTFVE-NP---DDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAAL-VRPLELGADV  209 (437)
T ss_pred             EEEEEC-CC---CCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCccccc-cChHHhCCCE
Confidence            999998 32   289999999999999999999999999999999999999999999999999988765 3444668999


Q ss_pred             EEeccccccCCCC--ceEEEE-ecCCCcc-------ccccccC------------Ccc----------ccccccCCCChh
Q 040741          252 MSLSGHKIYGPKG--VGALYM-RRRPRIR-------VEPLING------------GGQ----------ERGIRSGTLPTP  299 (457)
Q Consensus       252 ~~~s~~K~~g~~G--~G~l~~-~~~~~~~-------~~~~~~~------------~~~----------~~~~~~~t~~~~  299 (457)
                      +++|+||++|+.|  +|.+++ +++....       +.+....            .+.          ......++.++.
T Consensus       210 vv~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~  289 (437)
T PRK05613        210 VVASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARAGLLRDTGATLSPF  289 (437)
T ss_pred             EEeeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHHHHHHhcCCCCCHH
Confidence            9999999877654  344444 3321100       0000000            000          000001122222


Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCC--CC------------CcccceEEEEEcc--cc
Q 040741          300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGS--ME------------RRYIGNLNLSFAY--VE  362 (457)
Q Consensus       300 ~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~--~~------------~~~~~~~~~~~~~--~~  362 (457)
                      .+.-+...    .+.+.-++++..+++.++.+.|++ .|.+. ++-+  +.            ...++++.|.+.+  ..
T Consensus       290 ~a~l~~rg----l~TL~lR~~~~~~nA~~lA~~L~~-hp~V~~V~yPgl~~~p~~~~~~~~~~~g~gg~~sf~l~~~~~~  364 (437)
T PRK05613        290 NAWVTAQG----LDTLSLRLERHNENAIKVAEFLNN-HEKVAKVNFAGLKDSPWYATKEKLGLKYTGSVLSFDIKGGKDE  364 (437)
T ss_pred             HHHHHHcc----cCcHHHHHHHHHHHHHHHHHHHHc-CCCcceEECCCCCCCccHHHHHHhcCCCCceEEEEEecCCHHH
Confidence            22211111    124788889999999999999999 88763 2221  11            1246677777753  11


Q ss_pred             chHHHhccc--CeEecccCcc----CCCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          363 GESLLMGLK--EVAVSSGSAC----TSASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       363 ~~~~~~~l~--~i~~~~g~~~----~~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ...++..|+  .++..-|...    .+....+    .-..+..|+.+    +.|||+++.    ||+|.+++.|++++++
T Consensus       365 ~~~f~~~l~l~~~~~slG~~~sLv~~p~~~~h~~~~~~~~~~~Gi~~----~liRlsvGl----E~~~dLi~Dl~~Al~~  436 (437)
T PRK05613        365 AWAFIDALKLHSNLANIGDVRSLVVHPATTTHSQSDEAGLARAGITQ----ATVRLSVGI----EDIDDIIADLEGGFAA  436 (437)
T ss_pred             HHHHHHhCCcceEccCCCCCchhhcCCCccCCccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            335566663  4444445432    2332222    22345677765    899999996    7888899999988864

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.94  E-value=1.9e-24  Score=214.24  Aligned_cols=308  Identities=11%  Similarity=0.068  Sum_probs=215.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v  173 (457)
                      |+....+...++++.++++.|.+.  .+++++|++|+.+++.++.    ++||+|++..+.|.+.....+. +...|.++
T Consensus        54 y~R~~~p~~~~Le~~lA~l~g~~~--~v~~~sG~~Ai~~~l~all----~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~~v  127 (405)
T PRK08776         54 YTRSGNPTRDLLGEALAELEGGAG--GVITATGMGAINLVLNALL----QPGDTLVVPHDAYGGSWRLFNALAKKGHFAL  127 (405)
T ss_pred             ccCCCChHHHHHHHHHHHHhCCCc--eEEEcCHHHHHHHHHHHHh----CCCCEEEEccCCchHHHHHHHHHHHhcCcEE
Confidence            344444677889999999999753  6777778999999999987    8999999999999886654443 34558888


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      +.++..     |+++++++++++|++|++++++||+|.+.++++|.++|+++|+++++|++++.+.....+ .+++|+++
T Consensus       128 ~~v~~~-----d~~~l~~~i~~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~~~pl-~~gaDivv  201 (405)
T PRK08776        128 ITADLT-----DPRSLADALAQSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPALQKPL-EFGADLVL  201 (405)
T ss_pred             EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccccCCcc-cccCCEEE
Confidence            887653     899999999999999999999999999999999999999999999999999876532222 46789999


Q ss_pred             eccccccC-CCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYG-PKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       254 ~s~~K~~g-~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      .|.+|+++ +.+  .|+++.+++ ..+++.......       ....++.....+..    ..+.++.++++..+++..+
T Consensus       202 ~S~tK~l~g~~~~~~G~vv~~~~~l~~~l~~~~~~~-------g~~~s~~~a~l~~~----gl~tl~~r~~~~~~na~~l  270 (405)
T PRK08776        202 HSTTKYINGHSDVVGGAVVARDAELHQQLVWWANAL-------GLTGSPFDAFLTLR----GLRTLDARLRVHQENADAI  270 (405)
T ss_pred             ecCceeecCCCCceEEEEEeCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHh----hhCcHHHHHHHHHHHHHHH
Confidence            99999665 443  577776543 323332211111       11233333332222    2235678888999999999


Q ss_pred             HHHHhhcCCCeEEeCCC---C-----------CcccceEEEEEccc-c-chHHHhccc--CeEecccCccC----CCCCC
Q 040741          330 LNGIKEKLDGVVVNGSM---E-----------RRYIGNLNLSFAYV-E-GESLLMGLK--EVAVSSGSACT----SASLE  387 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~----~~~~~  387 (457)
                      .+.|++ .|.+.-+..|   .           ...++++.|.+++- + ...+++.|+  .++.+-|...+    +....
T Consensus       271 a~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~p~~~~  349 (405)
T PRK08776        271 AALLDG-HAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGEAAVRAFVDGLRYFTLAESLGGVESLIAHPASMT  349 (405)
T ss_pred             HHHHHc-CCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCHHHHHHHHHhCCcceEccCCCCCceEEECCcccc
Confidence            999998 7876432211   1           23577888888631 1 235666663  44555565432    22222


Q ss_pred             h----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          388 P----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       388 ~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++++.
T Consensus       350 h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~al~~~~  392 (405)
T PRK08776        350 HAAMTAEARAAAGISD----GLLRLSVGI----ESAEDLLIDLRAGLARAE  392 (405)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHhH
Confidence            1    12234567665    899999997    788888888888887653

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=1.3e-24  Score=216.77  Aligned_cols=315  Identities=14%  Similarity=0.157  Sum_probs=217.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |+....+....+++.++++.|.+.  .++++||+.|+.+++.++.    ++||+|+++.+.|++....+. .++..|+++
T Consensus        58 y~r~~~p~~~~Le~~lA~leg~~~--al~~~sG~~Ai~~al~~ll----~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv~v  131 (431)
T PRK08248         58 YTRIMNPTTDVFEKRIAALEGGIG--ALAVSSGQAAITYSILNIA----SAGDEIVSSSSLYGGTYNLFAHTLPKLGITV  131 (431)
T ss_pred             eECCCCchHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEccCchhhHHHHHHHHHHhCCEEE
Confidence            344445678889999999999754  8999999999999999887    899999999999987766554 356679999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ++++..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+....++ ++++|+++
T Consensus       132 ~~vd~~-----d~e~l~~ai~~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~~~pl-~~gaDivv  205 (431)
T PRK08248        132 KFVDPS-----DPENFEAAITDKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYLLRPI-EHGADIVV  205 (431)
T ss_pred             EEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccccCChh-HcCCCEEE
Confidence            999864     899999999999999999999999999999999999999999999999999865433333 57899999


Q ss_pred             eccccccCCCC--ceEEEEecCCCc-c-------cccc---c------c--CCc----c----ccccccCCCChhHHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPRI-R-------VEPL---I------N--GGG----Q----ERGIRSGTLPTPLIVGF  304 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~~-~-------~~~~---~------~--~~~----~----~~~~~~~t~~~~~~~al  304 (457)
                      .|++|++|+.|  +|.+++.+.... .       +...   .      .  +..    .    .........++..+.-+
T Consensus       206 ~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~  285 (431)
T PRK08248        206 HSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSFLL  285 (431)
T ss_pred             EcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence            99999887665  666666432111 0       0000   0      0  000    0    00000112222211111


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-eCC--CC------------CcccceEEEEEccc--cchHHH
Q 040741          305 GSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV-NGS--ME------------RRYIGNLNLSFAYV--EGESLL  367 (457)
Q Consensus       305 ~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~--~~------------~~~~~~~~~~~~~~--~~~~~~  367 (457)
                      ...    .+.+..++++..+++.++.+.|++ .|.+.- +-+  +.            ...++++.|.+.+-  ....++
T Consensus       286 ~rg----l~tl~~R~~~~~~nA~~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~  360 (431)
T PRK08248        286 LQG----LETLHLRMERHSENALAVAKFLEE-HEAVEWVSYPGLPSHPSYELAKKYLPKGQGAILTFGIKGGVEAGKKLI  360 (431)
T ss_pred             hcC----cCcHHHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHH
Confidence            110    123668889999999999999999 887642 221  11            23467777887531  123555


Q ss_pred             hccc--CeEecccCccC----CCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          368 MGLK--EVAVSSGSACT----SASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       368 ~~l~--~i~~~~g~~~~----~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ..|+  .++++-|...+    +....+    .-..+..|+.+    +.|||+++.    ||+|.+++.|+++++..+
T Consensus       361 ~~l~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----Ed~~dL~~Dl~~Al~~~~  429 (431)
T PRK08248        361 DSVKLFSHLANVGDSKSLIIHPASTTHQQLSEEEQLAAGVTP----GLVRLSVGT----EAIDDILDDLRQAIRQSQ  429 (431)
T ss_pred             HhCCcceeccccCCCCeeeeCCCcCccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence            6653  44555565433    222221    11234567765    899999996    889999999999988654

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.94  E-value=1.5e-24  Score=215.30  Aligned_cols=313  Identities=14%  Similarity=0.134  Sum_probs=216.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|++...+.+.++++.++++.|+++  .++++||+.|+.+++.++.    ++||+|+++.+.|........ .+...|++
T Consensus        58 ~y~r~~~p~~~~le~~lA~l~g~~~--~i~~~sG~~Al~~~l~~ll----~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~~  131 (403)
T PRK07503         58 FYSRISNPTLALLEQRMASLEGGEA--AVALASGMGAITATLWTLL----RPGDEVIVDQTLYGCTFAFLHHGLGEFGVT  131 (403)
T ss_pred             eeeCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHc----CCCCEEEEccCccchHHHHHHHHHhhCCEE
Confidence            3444445678999999999999865  6788889999999998887    899999999998877655443 34556999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++.+     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.....+ ..++|++
T Consensus       132 v~~vd~~-----d~~~l~~~i~~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~~~l-~~g~Di~  205 (403)
T PRK07503        132 VRHVDLT-----DPAALKAAISDKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQRPL-ELGADLV  205 (403)
T ss_pred             EEEeCCC-----CHHHHHHhcCccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEE
Confidence            9999875     899999999999999999999999999999999999999999999999999866432222 3578999


Q ss_pred             EeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       253 ~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +.|++|++|+.|   +|+++.+++..++++.....     ......++....+.+...+    +.+..+.++..+++..+
T Consensus       206 v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~-----~~~g~~~s~~~a~l~l~~L----~tl~~r~~~~~~na~~~  276 (403)
T PRK07503        206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLK-----DMTGAVMSPFDAFLLMRGL----KTLALRMDRHCASAQAV  276 (403)
T ss_pred             EccccccccCCCceeEEEEEcCHHHHHHHHhhhHH-----hCcCCCCCHHHHHHHHcCc----chHHHHHHHHHHHHHHH
Confidence            999999777644   68888766554444321100     0111233333332222222    24566667777889999


Q ss_pred             HHHHhhcCCCeEEe-CC--CC-----------CcccceEEEEEcc-c-cchHHHhccc--CeEecccCccC----CCCCC
Q 040741          330 LNGIKEKLDGVVVN-GS--ME-----------RRYIGNLNLSFAY-V-EGESLLMGLK--EVAVSSGSACT----SASLE  387 (457)
Q Consensus       330 ~~~l~~~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~-~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~  387 (457)
                      .+.|++ .|.+..+ -+  +.           ...++++.|.+++ . ....+...++  ..+..-|...+    +.++.
T Consensus       277 a~~L~~-~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~~~~l~l~~~~~slG~~~sl~~~~~~~~  355 (403)
T PRK07503        277 AEWLAR-HPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELKGGIAAGRRFMNALQLFARAVSLGDAESLAQHPASMT  355 (403)
T ss_pred             HHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEECCCHHHHHHHHHhCCcceeecccCCCCccCcCCCCCc
Confidence            999988 7776432 11  11           1246677777653 1 1234555553  33334444322    22221


Q ss_pred             h----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          388 P----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       388 ~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      +    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++...+.
T Consensus       356 h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~Al~~~~~~  400 (403)
T PRK07503        356 HSTYTPEERAEHGISE----GLVRLSVGL----EDVADILADLAQALDACAVA  400 (403)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEEec----CCHHHHHHHHHHHHHHHHHh
Confidence            1    11234566665    899999997    78888999999998876543

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.94  E-value=6.2e-25  Score=216.59  Aligned_cols=307  Identities=14%  Similarity=0.093  Sum_probs=215.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      +.|++...+.+.++|+.+++++|.+  ++++++||+.|+..++.++.    ++||+|+++.+.|.+....++.+...|++
T Consensus        45 ~~y~r~~np~~~~lE~~lA~l~g~~--~~l~~~sG~~Ai~~~l~~ll----~~GD~Vlv~~~~y~~~~~~~~~~~~~g~~  118 (385)
T PRK08574         45 LKYSREENPTLRPLEEALAKLEGGV--DALAFNSGMAAISTLFFSLL----KAGDRVVLPMEAYGTTLRLLKSLEKFGVK  118 (385)
T ss_pred             ceEECCCCccHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHhhccCcE
Confidence            3445555578899999999999975  37888999999999999887    89999999999999998877665566888


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      +++++      +|++++++++++ ++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... ..++|+
T Consensus       119 v~~~~------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~~l-~~GaDi  191 (385)
T PRK08574        119 VVLAY------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYRPL-RHGADF  191 (385)
T ss_pred             EEEEC------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCChh-hhCCcE
Confidence            87764      368999999998 8999999999999999999999999999999999999999877542222 457899


Q ss_pred             EEeccccccC-CCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYG-PKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g-~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|+++ +.+  .|++++++ +..+++......       .....++...+.+...+    +.+..++++..+++.
T Consensus       192 vv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~-------~g~~~~p~~a~l~l~~l----~tL~~R~~~~~~na~  260 (385)
T PRK08574        192 VVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRR-------LGTIMQPFEAYLVLRGL----KTLEVRFERQCRNAM  260 (385)
T ss_pred             EEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHccc----CcHHHHHHHHHHHHH
Confidence            9999999665 432  37566543 333333322211       11133333222222222    236677788888999


Q ss_pred             HHHHHHhhcCCCeE-EeCC--CC-------------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----C
Q 040741          328 RLLNGIKEKLDGVV-VNGS--ME-------------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----S  383 (457)
Q Consensus       328 ~l~~~l~~~~~~~~-~~~~--~~-------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~  383 (457)
                      ++.+.|++ .|.+. |+-+  ++             ..+++++.|.+++-  ....+++.|+  .++++-|...+    +
T Consensus       261 ~la~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~l~l~~~~~s~G~~~sl~~~~  339 (385)
T PRK08574        261 AIAEFLSE-HPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGRDAVLKFLRSLKLIKPSPSLGGVESLATYP  339 (385)
T ss_pred             HHHHHHHc-CCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCHHHHHHHHHcCCcceEccCCCCCcceeeCC
Confidence            99999988 77763 3221  11             12567777887631  1245566663  44555565432    2


Q ss_pred             CCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          384 ASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       384 ~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ....+    .-..+..|+.+    +.|||+++.    ||+|.+++.|++++++
T Consensus       340 ~~~~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~al~~  384 (385)
T PRK08574        340 VKSAASPIPEEDRKALGITE----DLVRLSVGL----EDVEDLIEDLDQALGS  384 (385)
T ss_pred             CcCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            22222    11234566664    899999997    7888899999888864

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.94  E-value=7.6e-24  Score=214.41  Aligned_cols=257  Identities=16%  Similarity=0.204  Sum_probs=190.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCC-----------C--CcEEEeCChHHHHHHHHHHhhhhhc----------------
Q 040741           93 HLFGWESEVAVETARSQIADLIGAS-----------P--KEIIFTSGATESNNVSIKGVMHFYK----------------  143 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~-----------~--~~i~~t~g~T~a~~~al~~~~~~~~----------------  143 (457)
                      +..+....+.-..+.++++++++..           +  ...+||+|||+|+..++.+.+....                
T Consensus       121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~  200 (522)
T TIGR03799       121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA  200 (522)
T ss_pred             eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence            3334444566667888888888521           1  2379999999999999988765321                


Q ss_pred             ------CCCCEEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEe--ccccc
Q 040741          144 ------DKKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELRAAIR----PDTGLISVM--AVNNE  208 (457)
Q Consensus       144 ------~~g~~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~--~~~~~  208 (457)
                            .++..|++++.+|.|+..+++.+   |+   +++.+|++.+|.+|+++|+++|+    .+++.++++  ..++.
T Consensus       201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~l---glg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~  277 (522)
T TIGR03799       201 ALKHYGYDGLAILVSERGHYSLGKAADVL---GIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTE  277 (522)
T ss_pred             hhhhccCCceEEEECCCchHHHHHHHHHc---CCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcC
Confidence                  12457899999999999998888   65   89999999999999999999986    455555555  55668


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCCC-cccEEEecccc-ccCCCCceEEEEecCCC-ccccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEKW-NVSLMSLSGHK-IYGPKGVGALYMRRRPR-IRVEP  280 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~~-~~Di~~~s~~K-~~g~~G~G~l~~~~~~~-~~~~~  280 (457)
                      +|.+.|+++|+++|+++|+++|+|+|++.+....+     +... ++|++++++|| +++|.|+|+++++++.. ..+.+
T Consensus       278 tGaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~  357 (522)
T TIGR03799       278 TGNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEH  357 (522)
T ss_pred             CCCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhcc
Confidence            99999999999999999999999999997765443     3333 68999999999 78899999999987422 22222


Q ss_pred             ---ccc-CCc---cccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          281 ---LIN-GGG---QERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       281 ---~~~-~~~---~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                         ++. .++   ....+. ++-+... ..+..+++.+. .+++++.++..++++++.+.|.+ .|+++++.++.   .+
T Consensus       358 ~~~Yl~~~~~~d~~~~~le-gsR~~~a-l~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~-~~~~el~~~p~---l~  431 (522)
T TIGR03799       358 HAEYILRKGSKDLGSHTLE-GSRPGMA-MLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQ-QPDFELVTEPE---LC  431 (522)
T ss_pred             CcchhcCCCCCccccceee-cCcchHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhh-CCCeEEecCCC---cc
Confidence               111 011   011233 2333333 34667777664 47999999999999999999999 89999998643   45


Q ss_pred             eEEEEE
Q 040741          353 NLNLSF  358 (457)
Q Consensus       353 ~~~~~~  358 (457)
                      ++.|.+
T Consensus       432 iv~Fr~  437 (522)
T TIGR03799       432 LLTYRY  437 (522)
T ss_pred             EEEEEE
Confidence            666665

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.94  E-value=2.6e-24  Score=214.13  Aligned_cols=318  Identities=15%  Similarity=0.158  Sum_probs=219.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v  173 (457)
                      |+....+....+++.++++.|.+.  .+++++|+.|+.+++.+++    ++|++|+++...|.+....+.. +...|+++
T Consensus        63 Ysr~~~p~~~~Le~~lA~l~g~~~--av~~sSG~aAi~~al~all----~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi~v  136 (436)
T PRK07812         63 YTRIMNPTQDVVEQRIAALEGGVA--ALLLASGQAAETFAILNLA----GAGDHIVSSPRLYGGTYNLFHYTLPKLGIEV  136 (436)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHh----CCCCEEEEeCCcchHHHHHHHHHhhcCeEEE
Confidence            444444678899999999999876  8999999999999999988    8999999999999887765543 35568888


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ++++ +.   .|+++++++++++|++|++++++||+|.+.|+++|.++||++|+++++|++++.+.... ..++++|+++
T Consensus       137 ~~vd-d~---~d~e~l~~ai~~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~~~-pl~~GaDivv  211 (436)
T PRK07812        137 SFVE-DP---DDLDAWRAAVRPNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYLIR-PLEHGADIVV  211 (436)
T ss_pred             EEEC-CC---CCHHHHHHhCCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccCC-chhcCCCEEE
Confidence            8885 22   28999999999999999999999999999999999999999999999999998765533 3356899999


Q ss_pred             eccccccCCCC--ceEEEEecCCCccccccccCCcc-------------------------ccccccCCCChhHHHHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQ-------------------------ERGIRSGTLPTPLIVGFGS  306 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~t~~~~~~~al~~  306 (457)
                      .|+||++|+.|  +|.+++.........+.......                         .........++..++-+..
T Consensus       212 ~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~l~~r  291 (436)
T PRK07812        212 HSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQLLRDLGSAISPFNAFLIAQ  291 (436)
T ss_pred             EecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHhc
Confidence            99999877665  55555543321110000000000                         0000001122211111110


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-eCC--CC------------CcccceEEEEEccc--cchHHHhc
Q 040741          307 ACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV-NGS--ME------------RRYIGNLNLSFAYV--EGESLLMG  369 (457)
Q Consensus       307 al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~--~~------------~~~~~~~~~~~~~~--~~~~~~~~  369 (457)
                          -...+..++++..+++.++.+.|++ .|.+.- +-+  +.            ..+++++.|.+.+-  ....++..
T Consensus       292 ----gl~tL~~R~~~~~~nA~~la~~L~~-~p~v~~V~yPgl~s~p~~~~~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~  366 (436)
T PRK07812        292 ----GLETLSLRIERHVANAQRVAEFLEA-RDEVASVNYAGLPSSPWYERAKRLAPKGTGAVLSFELAGGVEAGKAFVNA  366 (436)
T ss_pred             ----CcCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHh
Confidence                1124788899999999999999999 887632 222  11            23577788887531  13456666


Q ss_pred             cc--CeEecccCc----cCCCCCChh----HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          370 LK--EVAVSSGSA----CTSASLEPS----YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       370 l~--~i~~~~g~~----~~~~~~~~~----~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      |+  .++.+-|..    |.+....+.    -..+..|+.+    +.|||+++.    ||+|.+++.|+++++..+.-
T Consensus       367 l~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~~~gi~~----~liRlSvGl----Ed~~dli~dl~~Al~~~~~~  435 (436)
T PRK07812        367 LTLHSHVANIGDVRSLVIHPASTTHSQLTPEEQLATGVTP----GLVRLAVGI----EGIDDILADLEAGFAAAKAF  435 (436)
T ss_pred             CCcceEecccCCCcceeeCCCCCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhhcc
Confidence            64  444444543    223332221    1234567765    899999997    88999999999999887753

>PRK08175 aminotransferase; Validated

Probab=99.94  E-value=3.4e-24  Score=213.62  Aligned_cols=331  Identities=17%  Similarity=0.172  Sum_probs=223.7

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~-~i~~t~g~  127 (457)
                      .+.+.|+.+.+. ..++.+.+++.+.+...  ..    .  +|.......++++.+++++    |  ++++ ++++|+|+
T Consensus        29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~--~~----~--~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~  100 (395)
T PRK08175         29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRP--DT----H--GYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGS  100 (395)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC--Cc----C--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCc
Confidence            344666655444 34566777777665321  11    1  1111123455666666654    4  3565 79999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEec
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---PDTGLISVMA  204 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~  204 (457)
                      ++++.+++..++    ++|++|+++++.|+.+...++..   |.+++.++.+.++ .+.++++++++   +++++|++++
T Consensus       101 ~~~l~~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~  172 (395)
T PRK08175        101 KEGLAHLMLATL----DHGDTVLVPNPSYPIHIYGAVIA---GAQVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGF  172 (395)
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHHc---CCeEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeC
Confidence            999999988887    89999999999999988777665   9999999987543 25788888776   4789999999


Q ss_pred             cccccccccCh---HHHHHHHHhcCCcEEEehhhhcCC----Cccc---CCC-CcccEEEeccccccCCCC--ceEEEEe
Q 040741          205 VNNEIGVIQPM---EEIGQICKEFKIPFHTDAAQALGK----IPVD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       205 ~~~~~G~~~~l---~~i~~l~~~~~v~li~D~a~~~g~----~~~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      ++||+|.+.+.   ++|+++|++||+++|+|++++-..    ....   ... .+..+++.|++|.||.+|  +|+++.+
T Consensus       173 p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~  252 (395)
T PRK08175        173 PSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGN  252 (395)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCC
Confidence            99999999996   789999999999999999986321    1111   111 134467899999887666  8999988


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ++.++++.......       ..+.+.+...++..++......+++.+++++++++++.+.|++ . ++.+..+ ..  .
T Consensus       253 ~~l~~~~~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~p-~~--g  320 (395)
T PRK08175        253 PELVSALARIKSYH-------DYGTFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHE-A-GWMVEMP-KA--S  320 (395)
T ss_pred             HHHHHHHHHHHhhc-------ccCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCC-CE--E
Confidence            77666554332211       1123333334344455433334777888888999999999998 5 5554332 11  3


Q ss_pred             ceEEEEEccc----cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          352 GNLNLSFAYV----EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       352 ~~~~~~~~~~----~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      .++.+.++..    +..++...+   .||.+.+|..+..                 ...+++||++.  .+.+.++.+++
T Consensus       321 ~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~-----------------~~~~~lRis~~--~~~~~~~~al~  381 (395)
T PRK08175        321 MYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD-----------------YGDTHVRFALI--ENRDRIRQAIR  381 (395)
T ss_pred             EEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc-----------------CCCCeEEEEeC--CCHHHHHHHHH
Confidence            4444554421    245665543   5999988864321                 12368999996  46899999999


Q ss_pred             HHHHHHHHH
Q 040741          425 LTVKQVEKL  433 (457)
Q Consensus       425 ~l~~~~~~~  433 (457)
                      +|.+++++.
T Consensus       382 ~l~~~l~~~  390 (395)
T PRK08175        382 GIKAMFRAD  390 (395)
T ss_pred             HHHHHHHhc
Confidence            999888754

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=1.6e-24  Score=217.67  Aligned_cols=349  Identities=13%  Similarity=0.137  Sum_probs=232.6

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhh-ccC--CCCCCccchhhhHHHHHHHHHHHHHHHhC--------CCCCcE
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLS-RYG--NPHSRTHLFGWESEVAVETARSQIADLIG--------ASPKEI  121 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~--~p~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i  121 (457)
                      .+..+.|.|+.+.+..+.+.+.+.+.+.... .+.  +.....+...|.......++++.+|++++        ++++++
T Consensus        44 ~np~g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~I  123 (447)
T PLN02607         44 HNPSGVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRI  123 (447)
T ss_pred             cCCCceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHe
Confidence            4567789999999889888888888775431 000  00000000011112345667777777664        577889


Q ss_pred             EEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC----
Q 040741          122 IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP----  195 (457)
Q Consensus       122 ~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~----  195 (457)
                      ++|+|+|+|+.+++.+++    ++||.|+++.+.|+.+...+..  ..|.+++.++.+.  +..+|++++++++++    
T Consensus       124 vit~G~t~al~~l~~~l~----~pGD~Vlv~~P~Y~~f~~~~~~--~~g~~vv~v~~~~~~~f~~~~~~le~a~~~a~~~  197 (447)
T PLN02607        124 VLTAGATAANELLTFILA----DPGDALLVPTPYYPGFDRDLRW--RTGVKIVPIHCDSSNNFQVTPQALEAAYQEAEAA  197 (447)
T ss_pred             EEcCChHHHHHHHHHHhC----CCCCEEEEcCCCCcchHHHHHh--cCCcEEEEEeCCCCCCCcCCHHHHHHHHHHHHHh
Confidence            999999999999999988    8999999999999998765542  2488999988763  245899999998864    


Q ss_pred             --CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cc-cC-------C--C-CcccEEEecc
Q 040741          196 --DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PV-DV-------E--K-WNVSLMSLSG  256 (457)
Q Consensus       196 --~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~-~~-------~--~-~~~Di~~~s~  256 (457)
                        +++++++++++||+|.+++   +++|.++|++|++++|+|++|+....   ++ .+       .  . .+.-+++.|+
T Consensus       198 ~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~  277 (447)
T PLN02607        198 NIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSL  277 (447)
T ss_pred             CCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcc
Confidence              6889999999999999998   77889999999999999999974211   11 10       0  1 1223677899


Q ss_pred             ccccCCCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~l~  330 (457)
                      +|.||.+|  +|+++..+ .++..+....         ..+..+......+...++.   ....+...++++++.++.+.
T Consensus       278 SK~fg~~GlRvG~ivs~n~~l~~~~~~~~---------~~~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~  348 (447)
T PLN02607        278 SKDLGLPGFRVGTIYSYNDKVVTTARRMS---------SFTLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIV  348 (447)
T ss_pred             hhcCCCCcceEEEEEEcCHHHHHHHHHHh---------hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            99887665  89999843 2322222111         0112233333333333321   12235667778888888899


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEccc------c-chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAYV------E-GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +.|++ . ++.+..+ ..  +.++.+.++..      + ..++...+   .||.+.+|..|...                
T Consensus       349 ~~L~~-~-gi~~~~~-~a--g~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~----------------  407 (447)
T PLN02607        349 QGLRR-A-GIECLKG-NA--GLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCS----------------  407 (447)
T ss_pred             HHHHh-C-CCCcccC-Ce--eEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCC----------------
Confidence            99988 3 5554332 11  33344444321      1 12444444   48999999765421                


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChh
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPL  439 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~  439 (457)
                       ..+++||+++. .++++++.++++|.+++++-+..|-+
T Consensus       408 -~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~~~~~~~~~  444 (447)
T PLN02607        408 -EPGWFRVCFAN-MSEDTLEVALKRIHRFMDRRKTASSQ  444 (447)
T ss_pred             -CCCEEEEEecc-CCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence             12899999996 45899999999999999887766543

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.94  E-value=1.3e-24  Score=215.48  Aligned_cols=304  Identities=13%  Similarity=0.115  Sum_probs=215.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++...+...++++.++++.|.+  +++++++|+.|+..++.++.    ++||+|+++...|.+...... .+...|+++
T Consensus        64 Y~r~~~p~~~~le~~lA~l~g~~--~al~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~v  137 (403)
T PRK07810         64 YSRYGNPTVSMFEERLRLIEGAE--ACFATASGMSAVFTALGALL----GAGDRLVAARSLFGSCFVVCNEILPRWGVET  137 (403)
T ss_pred             eeCCCCchHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHHHHh----CCCCEEEEccCCcchHHHHHHHHHHHcCcEE
Confidence            34344467889999999999976  48999999999999998887    899999999888866655443 456679999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ++++..     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+..... ...++|+++
T Consensus       138 ~~vd~~-----d~~~l~~ai~~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~~-~~~gaDivv  211 (403)
T PRK07810        138 VFVDGE-----DLSQWEEALSVPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQRG-LPLGADVVV  211 (403)
T ss_pred             EEECCC-----CHHHHHHhcCcCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCCh-hhcCCcEEE
Confidence            999854     89999999999999999999999999999999999999999999999999987654322 245789999


Q ss_pred             eccccccCCCC---ceEEEEecCCCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYGPKG---VGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       254 ~s~~K~~g~~G---~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      .|++|++++.|   .|+++.+++.+. ++.......       ...+++...+.+...+    +.+..++++..+++.++
T Consensus       212 ~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~~~-------g~~~s~~~a~l~l~~L----~tl~~R~~~~~~~a~~~  280 (403)
T PRK07810        212 YSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRHT-------GPALSAFNAWVLLKGL----ETLALRVRHSNASALRI  280 (403)
T ss_pred             ccCCceecCCcCceeEEEEeChHHHHHHHHHHHHHh-------CCCCCHHHHHHHHhcc----CcHHHHHHHHHHHHHHH
Confidence            99999776544   488887765433 232222111       1134444333333232    34677888888899999


Q ss_pred             HHHHhhcCCCeEEeC-C--CC-----------CcccceEEEEEccc---c---chHHHhccc--CeEecccCccC----C
Q 040741          330 LNGIKEKLDGVVVNG-S--ME-----------RRYIGNLNLSFAYV---E---GESLLMGLK--EVAVSSGSACT----S  383 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~-~--~~-----------~~~~~~~~~~~~~~---~---~~~~~~~l~--~i~~~~g~~~~----~  383 (457)
                      .+.|++ .|.+.-+- +  +.           ...++++.|.+.+.   +   ..+++..|+  .+++.-|...+    +
T Consensus       281 a~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p  359 (403)
T PRK07810        281 AEFLEG-HPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVIDISNNLGDAKSLITHP  359 (403)
T ss_pred             HHHHhc-CCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceEEeccCCCCcceeeCC
Confidence            999998 77764322 1  11           13467788887531   1   235666553  44555554433    2


Q ss_pred             CCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          384 ASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       384 ~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ....+    .-.....|+.+    +.+||+++.    |+++.+++.|++++
T Consensus       360 ~~~~h~~~~~~~~~~~gi~~----~lvR~svGl----E~~~dli~dl~~Al  402 (403)
T PRK07810        360 ATTTHRAMGPEGRAAIGLGD----GVVRLSVGL----EDTDDLIADLDRAL  402 (403)
T ss_pred             CccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHhh
Confidence            21111    11233566654    799999997    78888888888765

>PLN02880 tyrosine decarboxylase

Probab=99.94  E-value=3.4e-24  Score=216.59  Aligned_cols=349  Identities=15%  Similarity=0.136  Sum_probs=233.7

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-------cEEEeCCh
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-------EIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-------~i~~t~g~  127 (457)
                      ..++-|+.+-..++.++.++--+....   + |+...++..+......-.++.+++++++|.+..       ..++|+||
T Consensus        80 ~~hP~f~~~~~~~~~~~~~lad~l~~~---~-n~~~~~~~~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsgg  155 (490)
T PLN02880         80 WQSPNYFAYYPSNSSVAGFLGEMLSAG---L-NIVGFSWITSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTA  155 (490)
T ss_pred             CCCCCeeEeccCCCcHHHHHHHHHHHh---h-ccCCcccccCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCcc
Confidence            355678887666666665555444333   3 222223333444556777799999999999753       38999999


Q ss_pred             HHHHHHHHHHhhhhhcC-------CCCEEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCC--CCCCCHHHHHHhcCC
Q 040741          128 TESNNVSIKGVMHFYKD-------KKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGA--DGIVNLDELRAAIRP  195 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~-------~g~~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~--~~~~d~~~le~~i~~  195 (457)
                      |+|+..++.+.+....+       ++-.|++++..|.++.++++.+   |+   .++.||++.  ++.+|+++|+++|.+
T Consensus       156 s~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~l---Glg~~~v~~Vp~d~~~~~~md~~~L~~~i~~  232 (490)
T PLN02880        156 SEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIA---GIHPENCRLLKTDSSTNYALAPELLSEAIST  232 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHc---CCCHHHEEEeecCCCcCCcCCHHHHHHHHHH
Confidence            99999999887743211       2335667888999999999998   66   578888874  578999999999964


Q ss_pred             C------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-----cCCC-CcccEEEecccc-ccCC
Q 040741          196 D------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-----DVEK-WNVSLMSLSGHK-IYGP  262 (457)
Q Consensus       196 ~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~~~~-~~~Di~~~s~~K-~~g~  262 (457)
                      +      +.+|+.+...+.+|.+.|+++|+++|++||+++|+|+|++.+....     .+.. ..+|.+++++|| ++.|
T Consensus       233 ~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P  312 (490)
T PLN02880        233 DLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTN  312 (490)
T ss_pred             HHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCC
Confidence            2      5678888888999999999999999999999999999999875532     1232 258999999999 5679


Q ss_pred             CCceEEEEecCCCccccccccCCcc-------c---cccccCCCCh---hHHHHHHHHHHH-HHHhhHHHHHHHHHHHHH
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQ-------E---RGIRSGTLPT---PLIVGFGSACEI-AKKEMDYDHKRITALHDR  328 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~t~~~---~~~~al~~al~~-~~~~~~~~~~~~~~~~~~  328 (457)
                      .|+|++++++.. ....+....+.+       .   ..+...+...   .....+-..++. ..+++.++.++.-+++++
T Consensus       313 ~~~g~llvr~~~-~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~  391 (490)
T PLN02880        313 FDCSLLWVKDRN-ALIQSLSTNPEFLKNKASQANSVVDYKDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKE  391 (490)
T ss_pred             ccEEEEEEeCHH-HHHHHHccCHHHhcCccccccCCCChhccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence            999999999631 111111111100       0   0000001100   001122222322 234577777777799999


Q ss_pred             HHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--c-------hHHHhcc--c-CeEecccCccCCCCCChhHHHHHcC
Q 040741          329 LLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--G-------ESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      +.+.|.+ .++++++.+++   .+++.|.++...  .       ..+...|  . .+.+...                  
T Consensus       392 ~~~~l~~-~~~~el~~~~~---~~iv~Fr~~~~~~~~~~~~~~n~~l~~~l~~~g~~~v~~t------------------  449 (490)
T PLN02880        392 FEQLVAQ-DSRFEVVTPRI---FSLVCFRLVPPKNNEDNGNKLNHDLLDAVNSSGKIFISHT------------------  449 (490)
T ss_pred             HHHHHhc-CCCEEEecCCc---eEEEEEEEeCCCCChhhHHHHHHHHHHHHHhCCCEEEEEE------------------
Confidence            9999998 89999988654   556677765321  1       1233333  1 2222211                  


Q ss_pred             CCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 040741          397 VDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~  435 (457)
                        .-.++.++|+++... ++++|++.+++.|.+..+++.+
T Consensus       450 --~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~~~~~  487 (490)
T PLN02880        450 --VLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEASKLLG  487 (490)
T ss_pred             --EECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence              112347999998665 5579999999999999888754

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.94  E-value=3.5e-24  Score=215.13  Aligned_cols=307  Identities=16%  Similarity=0.118  Sum_probs=212.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ..+.++++.++++++.+  ++++|+|||+|+.+++.+++    ++|| |+++++.|.++...+...   |.+++.++++.
T Consensus        78 ~g~~~Lreaia~~~~~~--~vv~t~ggt~A~~~~~~all----~pGD-Vii~~p~~~~~~~~i~~~---G~~~v~v~~~~  147 (460)
T PRK13238         78 RSYYRLEDAVKDIFGYP--YTIPTHQGRAAEQILFPVLI----KKGD-VVPSNYHFDTTRAHIELN---GATAVDLVIDE  147 (460)
T ss_pred             CCHHHHHHHHHHHhCCC--cEEECCCHHHHHHHHHHHhC----CCCC-EEccCCcccchHHHHHHc---CCEEEEEeccc
Confidence            46788999999999975  49999999999999999988    8999 989888888777666655   99999998852


Q ss_pred             ----------CCCCCHHHHHHhcCC----CceEEEEeccccccc-cccC---hHHHHHHHHhcCCcEEEehhhhcCC---
Q 040741          181 ----------DGIVNLDELRAAIRP----DTGLISVMAVNNEIG-VIQP---MEEIGQICKEFKIPFHTDAAQALGK---  239 (457)
Q Consensus       181 ----------~~~~d~~~le~~i~~----~t~li~i~~~~~~~G-~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---  239 (457)
                                .|.+|+++|+++|++    ++++|++++++|++| .+++   +++|.++|++||+++|.|+++..+.   
T Consensus       148 ~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f  227 (460)
T PRK13238        148 ALDTGSRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYF  227 (460)
T ss_pred             cccccccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhh
Confidence                      245999999999984    799999999999997 6766   6789999999999999999885421   


Q ss_pred             --------CcccCCC------CcccEEEecccc-ccCCCCceEEEEec-CCCccccccccCCccccccccCCCChhHHHH
Q 040741          240 --------IPVDVEK------WNVSLMSLSGHK-IYGPKGVGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVG  303 (457)
Q Consensus       240 --------~~~~~~~------~~~Di~~~s~~K-~~g~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a  303 (457)
                              ....+..      ...|++++|++| .+++.| |+++.++ ++.++++.......  ....++..+...+.|
T Consensus       228 ~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l~~~~~~~~~~~~--g~~t~~g~~~~~~~A  304 (460)
T PRK13238        228 IKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDLFTECRTLCILYE--GFPTYGGLAGRDMEA  304 (460)
T ss_pred             hhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHHHHHhhhcccccC--CcccccCcHHHHHHH
Confidence                    1111111      137999999999 677876 8888884 45555544432110  012344555555666


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---------cchHHHhcc---c
Q 040741          304 FGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---------EGESLLMGL---K  371 (457)
Q Consensus       304 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l---~  371 (457)
                      +..++....+  +...+...++++++.+.|.+  .|+.+..+.. .  ..+.+.+...         .+.+++..|   .
T Consensus       305 la~~l~e~~~--~~~~~~~~~~~~~l~~~L~~--~G~~~~~p~G-g--~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~  377 (460)
T PRK13238        305 LAVGLYEGMD--EDYLAYRIGQVEYLGEGLEE--AGVPIQTPAG-G--HAVFVDAGKFLPHIPAEQFPAQALACELYLEA  377 (460)
T ss_pred             HHhhHHHhhC--hHHHHHHHHHHHHHHHHHHH--CCCCeEccCC-c--eEEEEEchhcCCCCCCCCCchHHHHHHHHHHc
Confidence            6666654333  22233334457889999988  4888776432 2  2233433321         245666666   5


Q ss_pred             CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHH
Q 040741          372 EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       372 ~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||.+.+++.+..+.-.+      .|.........+||++.. .-|.+++|+++++|++..++-
T Consensus       378 GV~~~~~~~f~~~~~~~------~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~  434 (460)
T PRK13238        378 GIRGVEIGSLLLGRDPK------TGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKENR  434 (460)
T ss_pred             CeeeecccceecccCCC------CccccCCccceEEEecccccCCHHHHHHHHHHHHHHHHhH
Confidence            89988877654322110      111011124899999987 347899999999999877543

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=6.2e-24  Score=215.77  Aligned_cols=341  Identities=15%  Similarity=0.123  Sum_probs=225.2

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhh-------ccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--------CCCC
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLS-------RYGNPHSRTHLFGWESEVAVETARSQIADLIG--------ASPK  119 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~-------~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~  119 (457)
                      ..+.|.|+.+.+..+.+.+.+.+.+....       ....+..    ..|.......++++.+|++++        ++++
T Consensus        45 p~g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe  120 (496)
T PLN02376         45 PHGIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDI----ANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE  120 (496)
T ss_pred             CCceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchh----hccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh
Confidence            45779999988877666666666654332       0001111    111111234556666666654        6788


Q ss_pred             cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhc----
Q 040741          120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAI----  193 (457)
Q Consensus       120 ~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i----  193 (457)
                      +|++|+|+++|+.+++.+++    ++||.|+++.+.|+.+...+..  ..|++++.++++  .++.+|++++++++    
T Consensus       121 ~Ivit~Ga~~al~~l~~~l~----~pGD~Vlv~~P~Y~~~~~~~~~--~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~  194 (496)
T PLN02376        121 RVVMSGGATGANETIMFCLA----DPGDVFLIPSPYYAAFDRDLRW--RTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQ  194 (496)
T ss_pred             hEEEccchHHHHHHHHHHhC----CCCCEEEECCCCccchHHHHHh--hCCCEEEEEeCCCCccCcCCHHHHHHHHHHHH
Confidence            99999999999999999998    8999999999999999876542  239999999985  34578999987653    


Q ss_pred             --CCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----Cccc---C-CC-----Cccc--EEE
Q 040741          194 --RPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVD---V-EK-----WNVS--LMS  253 (457)
Q Consensus       194 --~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~---~-~~-----~~~D--i~~  253 (457)
                        ..++++|++++++||||.+++   +++|+++|++|+++||+|++|+...    ....   + ..     .+.+  +++
T Consensus       195 ~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv  274 (496)
T PLN02376        195 ESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIV  274 (496)
T ss_pred             hcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEE
Confidence              246788999999999999999   6678889999999999999997421    1111   1 00     0123  456


Q ss_pred             eccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDR  328 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~  328 (457)
                      .|++|.||.+|  +|+++..++.+........        ..+..+.....++...++.   ....+.+..+++++.++.
T Consensus       275 ~S~SK~~glpGlRvG~li~~~~~l~~~~~~~~--------~~~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~  346 (496)
T PLN02376        275 YSLSKDMGLPGFRVGIVYSFNDSVVSCARKMS--------SFGLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKV  346 (496)
T ss_pred             EeccccCCCCcceEEEEEECCHHHHHHHHHHh--------hcCCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHH
Confidence            89999887555  9999986443322211111        1123344444444444421   122355667778888888


Q ss_pred             HHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-cc-------chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          329 LLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VE-------GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      +.+.|++ . ++.+..+ +.  +.++.+.++. ..       ..++...+   .||.+.+|..|...             
T Consensus       347 l~~~L~~-~-gi~~~~~-~a--G~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~-------------  408 (496)
T PLN02376        347 FTTGIKK-A-DIACLTS-NA--GLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCT-------------  408 (496)
T ss_pred             HHHHHHH-C-CCcccCC-Cc--eEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCC-------------
Confidence            9999988 3 6555432 21  2333444432 11       13444444   48999999765321             


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                          ..+++||+++. .+++.++..+++|++++++.++.
T Consensus       409 ----~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~~~~~~  442 (496)
T PLN02376        409 ----EPGWFRICFAN-MDDDTLHVALGRIQDFVSKNKNK  442 (496)
T ss_pred             ----CCCEEEEEeeC-CCHHHHHHHHHHHHHHHHHhhhc
Confidence                12799999986 35799999999999999866543

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.94  E-value=6.7e-25  Score=216.92  Aligned_cols=304  Identities=16%  Similarity=0.137  Sum_probs=211.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      ++...+...++++.++++.|.+.  .+.+++|++|+.+++.++.    ++||+|+++.+.|.+....+.. +...|++++
T Consensus        56 ~r~~~p~~~~Le~~lA~~~g~~~--~i~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi~~~  129 (388)
T PRK07811         56 ARTGNPTRTALEEQLAALEGGAY--GRAFSSGMAATDCLLRAVL----RPGDHIVIPNDAYGGTFRLIDKVFTRWGVEYT  129 (388)
T ss_pred             cCCCCccHHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchHHHHHHHHhCcCCCeEEE
Confidence            33344678899999999999875  5666778999999999997    8999999999999877655443 344588888


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      +++..     |++++++++++++++|++++++||+|.+.++++|.++|+++|+++++|++++.+...... ..++|++++
T Consensus       130 ~~d~~-----d~e~l~~~i~~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~~p~-~~gaDivv~  203 (388)
T PRK07811        130 PVDLS-----DLDAVRAAITPRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQQPL-ALGADVVVH  203 (388)
T ss_pred             EeCCC-----CHHHHHHhcCcCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccCCch-hhCCcEEEe
Confidence            87753     899999999999999999999999999999999999999999999999999877543222 357899999


Q ss_pred             ccccccCCC-C--ceEEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          255 SGHKIYGPK-G--VGALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       255 s~~K~~g~~-G--~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      |++|++++. +  .|+++++++. .+++.......+       ...++.....+...    .+.+..++++..+++..+.
T Consensus       204 S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g-------~~~s~~~a~l~~~~----L~tl~~R~~~~~~na~~la  272 (388)
T PRK07811        204 STTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAG-------AVPGPFDAYLTLRG----LKTLAVRMDRHSENAEAVA  272 (388)
T ss_pred             cCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcC-------CCCCHHHHHHHHhc----cCcHHHHHHHHHHHHHHHH
Confidence            999976643 2  5888876542 233332221111       12222221111111    1246777888889999999


Q ss_pred             HHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCCCCh
Q 040741          331 NGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SASLEP  388 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~~~~  388 (457)
                      +.|++ .|++.-+--|.              ..+++++.|.+++-  ....++..|+  .++.+-|...+    +....+
T Consensus       273 ~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~~~  351 (388)
T PRK07811        273 EFLAG-HPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGEEAARDFCARTKVFTLAESLGGVESLIEHPSAMTH  351 (388)
T ss_pred             HHHHh-CCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCHHHHHHHHHhCCcceeeccCCCCcceEeCCcccCc
Confidence            99998 88764321111              13577888888631  2345555553  45555565432    211111


Q ss_pred             hH-HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          389 SY-VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       389 ~~-~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .. ..+..|+.+    +.|||+++.    ||.+.+++.|+++++
T Consensus       352 ~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~  387 (388)
T PRK07811        352 ASTAGSQLEVPD----DLVRLSVGI----EDVADLLADLEQALG  387 (388)
T ss_pred             ccCCHhhcCCCC----CEEEEEeCC----CCHHHHHHHHHHHhh
Confidence            11 112345544    899999997    788888888888875

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.94  E-value=9.5e-24  Score=207.88  Aligned_cols=318  Identities=15%  Similarity=0.111  Sum_probs=220.9

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ++.+.|+.+.+. ++++.+.+++.+.+.....+|.           ....++++.++++++++++++++|+|+++++.++
T Consensus        22 ~~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~-----------~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~   90 (360)
T PRK07392         22 DAILDFSASINPLGPPESVIAAIQSALSALRHYPD-----------PDYRELRLALAQHHQLPPEWILPGNGAAELLTWA   90 (360)
T ss_pred             ccEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC-----------cCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHH
Confidence            355788866554 6788999998877654322211           1235899999999999999999999999999998


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCC-----CCHHHHHHhcCCCceEEEEecccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI-----VNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~-----~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +.++.     +++.|++..+.|..+...++..   |.+++.++.+.++.     .|++++++.. .++++++++++||||
T Consensus        91 ~~~l~-----~g~~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~nP~NPT  161 (360)
T PRK07392         91 GRELA-----QLRAVYLITPAFGDYRRALRAF---GATVKELPLPLDQPSPGLTLRLQTLPPQL-TPNDGLLLNNPHNPT  161 (360)
T ss_pred             HHHhC-----CCCeEEEECCCcHHHHHHHHHc---CCeEEEEecccccCCcccccCHHHHHHhc-cCCCEEEEeCCCCCC
Confidence            88754     4679999999999998887766   99999999874432     4677776654 467899999999999


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCc------cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccc
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIP------VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEP  280 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~------~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~  280 (457)
                      |.+.+.++|.++++++++ +++|+++.--...      .. +.....-+++.|++|.||.+|  +|+++++++.++++..
T Consensus       162 G~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlRiG~~v~~~~~~~~~~~  240 (360)
T PRK07392        162 GKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLRLGYAIAHPDRLQRWQQ  240 (360)
T ss_pred             CCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchheeeeeCCHHHHHHHHh
Confidence            999999999999999986 6669998632111      11 112223478889999887555  9999998766555432


Q ss_pred             cccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ...         ..+.+.....++..+++. ....+...+.++++++++.+.|++ ++++.+..  ..  ..++.+.++.
T Consensus       241 ~~~---------~~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~--~~--~~fl~~~~~~  305 (360)
T PRK07392        241 WRD---------PWPVNGLAAAAAIAALAD-RDFQQQTWAWLPPAREALFQGLAS-LPGLTPLP--SA--ANFLLVQSQG  305 (360)
T ss_pred             hCC---------CCCCCHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECC--CC--CCEEEEEcCC
Confidence            221         124555555555555542 122344556778888889999988 78877643  11  3444444442


Q ss_pred             ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                       +..++...+   .||.+.+|..+..                 ...++|||+++.   .++.+++.+.+++.+
T Consensus       306 -~~~~l~~~ll~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~---~~~~~~l~~al~~~~  357 (360)
T PRK07392        306 -SALQLQEKLLQQHRILIRDCLSFPE-----------------LGDRYFRVAVRT---EAENQRLLEALAAIL  357 (360)
T ss_pred             -CHHHHHHHHHhhCCEEEEeCCCCCC-----------------CCCCEEEEEeCC---HHHHHHHHHHHHHHh
Confidence             445665553   5899998865421                 123799999985   555666666666544

>PLN02271 serine hydroxymethyltransferase

Probab=99.93  E-value=7e-24  Score=209.83  Aligned_cols=341  Identities=13%  Similarity=0.180  Sum_probs=240.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHH-HHHHHHHHHHhCCCC----CcEEEeCChHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAV-ETARSQIADLIGASP----KEIIFTSGATESNNVSI  135 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~~~la~~~g~~~----~~i~~t~g~T~a~~~al  135 (457)
                      .++.+.+++.+++++...+.+.|  |.|..+.| .|....+.+ .-+.++..++||+++    .++..- ||+.|+..++
T Consensus       154 IASEN~~S~av~~algS~ltnkYaEG~pG~Ryy-~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~  231 (586)
T PLN02271        154 IASENFVCRAVMEALGSHLTNKYSEGMPGARYY-TGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVY  231 (586)
T ss_pred             ccccccCCHHHHHHhcCcccccCCCCCCCCcCC-CCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHH
Confidence            45566899999999999998876  46665433 343433344 446788888999876    454444 7899999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHH------HHHhcCcEEE--EEeCC-CCCCCCHHHHHH-hcCCCceEEEEecc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR------HLQQEGFEIT--YLPVG-ADGIVNLDELRA-AIRPDTGLISVMAV  205 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~------~~~~~G~~v~--~v~~~-~~~~~d~~~le~-~i~~~t~li~i~~~  205 (457)
                      .+++    +|||.|+..+.+|.+......      .+...|..+.  .++++ .+|.+|++++++ +...++++|++.+.
T Consensus       232 ~ALl----~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~~rPKLII~g~S  307 (586)
T PLN02271        232 TGLL----LPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGS  307 (586)
T ss_pred             HHhc----CCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhhcCCeEEEECch
Confidence            9998    999999999988888776532      1122354444  44464 678999999998 77889999999887


Q ss_pred             ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC---CCcccEEEecccc-ccCCCCceEEEEecCCCcccccc
Q 040741          206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE---KWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL  281 (457)
Q Consensus       206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~---~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~  281 (457)
                      .++  ...|+++|+++|+++|+++++|++|..|.++.+..   ..++|++++|.|| +.||.| |+++.+++........
T Consensus       308 ayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I~~r~~~~~~~~g~  384 (586)
T PLN02271        308 SYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GIIFYRKGPKLRKQGM  384 (586)
T ss_pred             hcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEEEecccccccccCC
Confidence            776  77899999999999999999999999998865432   2258999999999 679998 8888876543333222


Q ss_pred             ccCCccc---------------cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          282 INGGGQE---------------RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       282 ~~~~~~~---------------~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      ..+++..               -++..|+++.. ++++..+++.+.. ++....+++.++++.|.+.|.+  .|+.++..
T Consensus       385 ~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~-IAalAvalkea~~~efk~Ya~QVv~NAkaLA~~L~~--~G~~vv~g  461 (586)
T PLN02271        385 LLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNH-IAALAIALKQVATPEYKAYMQQVKKNAQALASALLR--RKCRLVTG  461 (586)
T ss_pred             ccccccccccHHHHHHhhcccCCccccChhHHH-HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHH--CCCeEeeC
Confidence            2222211               12334455544 8888888887764 5789999999999999999998  58888764


Q ss_pred             CCCcccceEEEEEc--cccchHHHhccc--CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC----CHH
Q 040741          346 MERRYIGNLNLSFA--YVEGESLLMGLK--EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT----TEA  417 (457)
Q Consensus       346 ~~~~~~~~~~~~~~--~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~----t~e  417 (457)
                      ...  ...+.+.+.  +.++......|+  +|.+........              ......+.|||+....+    .++
T Consensus       462 gTd--nHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d--------------~~~~~psGiRiGT~alT~rG~~e~  525 (586)
T PLN02271        462 GTD--NHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGD--------------NGTISPGGVRIGTPAMTSRGCLES  525 (586)
T ss_pred             CCC--cceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCC--------------CCCCCCCcccccCHHHHhcCCCcH
Confidence            333  233334443  345666555553  555533211100              11233478999976654    468


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQVE  431 (457)
Q Consensus       418 did~~~~~l~~~~~  431 (457)
                      |++++.+.|.++++
T Consensus       526 d~~~iA~~i~~~~~  539 (586)
T PLN02271        526 DFETIADFLLRAAQ  539 (586)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999887

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.93  E-value=2.2e-24  Score=212.54  Aligned_cols=305  Identities=12%  Similarity=0.090  Sum_probs=214.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      ++..++...++++.++++.|.  +++++++||++|+.+++.++.    ++||+|+++.+.|.+....+.. ....|.++.
T Consensus        46 ~R~~~p~~~~le~~lA~l~g~--~~v~~~~gg~~Ai~~~l~all----~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~v~  119 (382)
T TIGR02080        46 SRSGNPTRDLLQQALAELEGG--AGAVVTNTGMSAIHLVTTALL----GPDDLLVAPHDCYGGTYRLLNALAKKGCFRVL  119 (382)
T ss_pred             cCCCCchHHHHHHHHHHHhCC--CcEEEEcCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhcCeEEE
Confidence            333446788999999999995  459999999999999999987    8999999999999877665544 344567887


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      .++.     .|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... ..++|+++.
T Consensus       120 ~~d~-----~d~~~l~~ai~~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~~pl-~~gaDivv~  193 (382)
T TIGR02080       120 FVDQ-----GDEQALRAALAQKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQNPL-ALGADLVLH  193 (382)
T ss_pred             EECC-----CCHHHHHHhcCcCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccCCch-hhCCCEEEe
Confidence            7753     2899999999999999999999999999999999999999999999999999866432222 347899999


Q ss_pred             cccccc-CCCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          255 SGHKIY-GPKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       255 s~~K~~-g~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      |++|++ |+.+  .|++++++. ..+++.......       ..+.++.....+...+    +.+..++++..+++..+.
T Consensus       194 S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~~~-------g~~~sp~~a~l~lr~l----~tl~~R~~~~~~na~~~a  262 (382)
T TIGR02080       194 SCTKYLNGHSDVIAGAVIAKDPQVAEELAWWANNL-------GVTGGAFDSYLTLRGL----RTLVARMRLQQRNAQAIV  262 (382)
T ss_pred             ecceeccCCCCceeEEEEeCCHHHHHHHHHHHHcc-------CCCCCHHHHHHHHccc----chHHHHHHHHHHHHHHHH
Confidence            999955 4555  687777543 333333222111       1133333333222222    245666788889999999


Q ss_pred             HHHhhcCCCeEE-eCC--CC-----------CcccceEEEEEccc-c-chHHHhccc--CeEecccCccC----CCCCCh
Q 040741          331 NGIKEKLDGVVV-NGS--ME-----------RRYIGNLNLSFAYV-E-GESLLMGLK--EVAVSSGSACT----SASLEP  388 (457)
Q Consensus       331 ~~l~~~~~~~~~-~~~--~~-----------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~----~~~~~~  388 (457)
                      +.|++ .|.+.- +-+  +.           ...++++.|.+++- + ...++..|+  .++++-|...+    +....+
T Consensus       263 ~~L~~-~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~~  341 (382)
T TIGR02080       263 EYLQT-QPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGEQTVRRFLGGLSLFTLAESLGGVESLIAHPATMTH  341 (382)
T ss_pred             HHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcHHHHHHHHHcCCcceEeccCCCCcceeECCCccCc
Confidence            99998 777642 221  11           23577888888631 1 235566663  55666665432    222211


Q ss_pred             ----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          389 ----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       389 ----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                          .-.....|+.+    +.|||+++.    ||+|.+++.|++++++
T Consensus       342 ~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dl~~dl~~al~~  381 (382)
T TIGR02080       342 AAMGPEARAEAGISD----TLLRLSVGL----EDADDLIADLEQGLRA  381 (382)
T ss_pred             ccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                12234567665    899999996    7888899999888763

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PRK06855 aminotransferase; Validated

Probab=99.93  E-value=4e-24  Score=215.07  Aligned_cols=333  Identities=15%  Similarity=0.164  Sum_probs=216.5

Q ss_pred             cEEecCCCC----CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741           58 PLYLDMQAT----TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA  127 (457)
Q Consensus        58 ~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~  127 (457)
                      .++|..+.+    -++|+.+.+++.+.+...    .    .++|.......++|+.+++++    |  +++++|++|+|+
T Consensus        34 ~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~----~----~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~  105 (433)
T PRK06855         34 ITWENIGDPIAKGEKIPDWMKEIVAELVMDD----K----SYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGL  105 (433)
T ss_pred             ccccccCCCcccCCCCCHHHHHHHHHHhhcC----C----CCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcH
Confidence            355554444    267788888888876431    0    111222234456666666665    4  567889999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcC--CCceEEEEe
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIR--PDTGLISVM  203 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~--~~t~li~i~  203 (457)
                      ++|+.+++. ++    ++||.|++..+.|+.+.....  ...|++++.++.+.  +..+|+++|+++++  +++++++++
T Consensus       106 ~~al~~~~~-l~----~~Gd~Vlv~~P~Y~~~~~~~~--~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~  178 (433)
T PRK06855        106 GDAIAKIYG-LL----RREARVIGPSPAYSTHSSAEA--AHAGYPPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLI  178 (433)
T ss_pred             HHHHHHHHH-hc----CCCCeEEEeCCCCchHHHHHH--HhcCCeEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEE
Confidence            999998874 66    799999999999998654322  22388888888763  34689999999996  467888999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----ccc---CCCCcccEEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVD---VEKWNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||||.+.+   +++|+++|++||++||+|++|+--..    ...   +...+..+++.|++|.++.+|  +||+++.
T Consensus       179 ~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p  258 (433)
T PRK06855        179 NPDNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVY  258 (433)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEe
Confidence            99999999998   56788889999999999999863211    111   111112478899999877555  9999984


Q ss_pred             cCC----CccccccccCCccccccccCCCChhHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          272 RRP----RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI--AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       272 ~~~----~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      +..    +.++.......   ..... .++.....++..+++.  ..+.+++.++.++++++.+.+.|.+ ++++.+..+
T Consensus       259 ~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~-~~~~~~~~p  333 (433)
T PRK06855        259 NADKDEVFKKYINSILNA---KMIEV-CSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKD-VPGLKVNRT  333 (433)
T ss_pred             CCchhhHHHHHHHHHHHh---hcccc-CCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCCeeccCC
Confidence            311    01111111000   00111 2344444444445432  1334777888889999999999988 777665432


Q ss_pred             CCCcccceEEEEEccc----------------------------cchHHHhcc---cCeEecccCccCCCCCChhHHHHH
Q 040741          346 MERRYIGNLNLSFAYV----------------------------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRA  394 (457)
Q Consensus       346 ~~~~~~~~~~~~~~~~----------------------------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~  394 (457)
                       +.  +.++.+.++..                            ++.++...+   .||.+.+|..+..           
T Consensus       334 -~g--g~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~-----------  399 (433)
T PRK06855        334 -NG--AFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCT-----------  399 (433)
T ss_pred             -Ce--eEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCC-----------
Confidence             22  22333333321                            123344332   6999999976532           


Q ss_pred             cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       395 ~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                             ....+||+++. .+.++++..+++|.+++++
T Consensus       400 -------~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~  429 (433)
T PRK06855        400 -------ELNGFRVTLLE-RDEEKFEWIYQTLAEKIEE  429 (433)
T ss_pred             -------CCCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence                   01459999987 4689999999999999875

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.93  E-value=4.6e-24  Score=207.49  Aligned_cols=326  Identities=14%  Similarity=0.070  Sum_probs=237.5

Q ss_pred             CCCCCCHH-HHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHHHHHHHhhhh
Q 040741           65 ATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE--IIFTSGATESNNVSIKGVMHF  141 (457)
Q Consensus        65 ~~~~~~~~-v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--i~~t~g~T~a~~~al~~~~~~  141 (457)
                      |+..+.|. .++++.+..-   +.+|     .+..+.+.+.++++.|.++++.+.+.  +++++|||.++++++.++.. 
T Consensus        10 gp~~~~~~~~~~~~~~~~~---~~~H-----Rs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~~-   80 (374)
T TIGR01365        10 GPCAKRPGWSIEELKNAPL---GRSH-----RSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSMLG-   80 (374)
T ss_pred             CccCCCchhhHHHHhhhhc---ccCc-----CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcCC-
Confidence            44445555 6666665432   2222     25677799999999999999974332  67799999999999999883 


Q ss_pred             hcCCCCEEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741          142 YKDKKRHVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ  220 (457)
Q Consensus       142 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~  220 (457)
                        ++|+++++..  ..+-....+.++..|+ ++..++.+.+..+|+++++.    +. -|+++|..+.||+..|++++..
T Consensus        81 --~~g~~vLv~g--~FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~----~~-~v~~vhnETSTGv~npv~~i~~  151 (374)
T TIGR01365        81 --CRGVDVLAWE--SFGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF----KN-DVVFTWNGTTSGVRVPNGDFIP  151 (374)
T ss_pred             --CCCCeEEEEC--HHHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC----CC-CEEEecCCCchheecccccccc
Confidence              3788888754  3333323355566799 58888888888899999973    12 2678999999999999976663


Q ss_pred             HHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc--------ccCCcc----
Q 040741          221 ICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL--------INGGGQ----  287 (457)
Q Consensus       221 l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~--------~~~~~~----  287 (457)
                      .+  +++++++|++.++|+.+++++.  +|+++.+.+| +.+|+|+++++++++..++....        +.....    
T Consensus       152 ~~--~~~lliVDavSs~g~~~l~~d~--iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~~~~~~~~~  227 (374)
T TIGR01365       152 AD--REGLTICDATSAAFAQDLDYHK--LDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIFRLTKGGKL  227 (374)
T ss_pred             cc--CCCcEEEEccchhcCCCCChhH--CcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhhccccccch
Confidence            22  5899999999999999999884  9999999999 55688999999999877654321        111000    


Q ss_pred             ----ccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCcccceEEEEEcc
Q 040741          288 ----ERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRYIGNLNLSFAY  360 (457)
Q Consensus       288 ----~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~  360 (457)
                          ..+....||++..+.++..+++.+++  +++.+.++++++++.+++++++ +..+.++.. +..+.+.++.+.++.
T Consensus       228 ~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~-lg~l~~~~~~~~~rS~tvt~v~~~~  306 (374)
T TIGR01365       228 NKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAK-NNWIHFLAETPEIRSNTSVCLKVVD  306 (374)
T ss_pred             hhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCChhhcCCCeEEEEeCC
Confidence                11334557777777777777877665  5999999999999999999999 644777653 334556666666633


Q ss_pred             --c-----c-----chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          361 --V-----E-----GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       361 --~-----~-----~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                        +     +     ..++...+  +||.+.+|...                   ..+..+||+....++.+||+.+++.|
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~-------------------~~~~~fRIg~~G~i~~~di~~l~~~l  367 (374)
T TIGR01365       307 PAIDALDEDAQADFAKELISTLEKEGVAYDIGSYR-------------------DAPSGLRIWCGATVEKSDLECLCPWL  367 (374)
T ss_pred             ccccccccchhhHHHHHHHHHHHHCCEEEeccccc-------------------cCCCceEEecCCcCCHHHHHHHHHHH
Confidence              2     1     34555555  68888766421                   12378999999999999999999999


Q ss_pred             HHHHHH
Q 040741          427 VKQVEK  432 (457)
Q Consensus       427 ~~~~~~  432 (457)
                      .-+.++
T Consensus       368 ~~~~~~  373 (374)
T TIGR01365       368 DWAFAL  373 (374)
T ss_pred             HHHHhc
Confidence            877653

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>PLN02590 probable tyrosine decarboxylase

Probab=99.93  E-value=2.4e-23  Score=210.41  Aligned_cols=349  Identities=15%  Similarity=0.135  Sum_probs=235.5

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-------KEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-------~~i~~t~g~T  128 (457)
                      .++-|+.+-..+..++.++-.+.....    |+....+..+....+.-..+.+++++++|.++       ...+|++|||
T Consensus       129 ~hP~f~a~~~~~~~~~~~lgd~l~sa~----n~~~~~~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgS  204 (539)
T PLN02590        129 QSPSYFAYYASSTSVAGFLGEMLNAGL----SVVGFTWLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGC  204 (539)
T ss_pred             CCCCeeEeccCCCcHHHHHHHHHHHhc----ccccCCcccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchH
Confidence            566788886666666666555444332    22222444455566777789999999999975       3489999999


Q ss_pred             HHHHHHHHHhhhhhc-------CCCCEEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCC--CCCCCCHHHHHHhcCCC
Q 040741          129 ESNNVSIKGVMHFYK-------DKKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVG--ADGIVNLDELRAAIRPD  196 (457)
Q Consensus       129 ~a~~~al~~~~~~~~-------~~g~~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~--~~~~~d~~~le~~i~~~  196 (457)
                      +|+..++.+.+....       .++-.|++++..|.|+.++++.+   |+   +++.||++  .++.+|+++|+++|+++
T Consensus       205 eAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~il---Glg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d  281 (539)
T PLN02590        205 EAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIG---GIHEENIRLLKTDSSTNYGMPPESLEEAISHD  281 (539)
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHc---CCCcccEEEEeCCCCCCCcCCHHHHHHHHHHH
Confidence            999999888764321       12235667888999999999998   65   68888887  45799999999999653


Q ss_pred             ------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCC-CcccEEEeccccc-cCCC
Q 040741          197 ------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEK-WNVSLMSLSGHKI-YGPK  263 (457)
Q Consensus       197 ------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~-~~~Di~~~s~~K~-~g~~  263 (457)
                            +.+|+.+...+.+|.+.|+++|+++|++||+++|+|+|++.......     +.. ..+|.+++++||+ +.|.
T Consensus       282 ~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~  361 (539)
T PLN02590        282 LAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ  361 (539)
T ss_pred             HhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc
Confidence                  56888888989999999999999999999999999999987654321     111 1479999999995 6688


Q ss_pred             CceEEEEecCCC--ccc---cccccCC----ccccccccCCCCh---hHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHH
Q 040741          264 GVGALYMRRRPR--IRV---EPLINGG----GQERGIRSGTLPT---PLIVGFGSACEI-AKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       264 G~G~l~~~~~~~--~~~---~~~~~~~----~~~~~~~~~t~~~---~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~  330 (457)
                      +||+++++++..  ..+   .+++...    +....+...++..   .....+-.+++. ..+++.++.++.-++++++.
T Consensus       362 ~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~  441 (539)
T PLN02590        362 TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYKDWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFE  441 (539)
T ss_pred             CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCccccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999997521  111   1111100    0000000001110   122223334443 34579999999999999999


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEccc--cc---h----HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAYV--EG---E----SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~----~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      +.|++ .++++++.++.   .+++.|++...  +.   .    .+...+  .|.+..+.                   ..
T Consensus       442 ~~l~~-~~~fel~~~~~---l~iVcFr~~~~~~~~~~~~~ln~~l~~~l~~~G~~~vs~-------------------t~  498 (539)
T PLN02590        442 DYVAQ-DPSFEVVTTRY---FSLVCFRLAPVDGDEDQCNERNRELLAAVNSTGKIFISH-------------------TA  498 (539)
T ss_pred             HHHhc-CCCeEEecCCc---eEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCEEEEe-------------------eE
Confidence            99999 89999987643   56666666431  11   2    222232  23222111                   11


Q ss_pred             cCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       400 ~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      -.+...||+++ +..++++||+.+++.|.+..+++.
T Consensus       499 ~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~~~  534 (539)
T PLN02590        499 LSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHASKFT  534 (539)
T ss_pred             ECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            12346899997 556889999999999999877653

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.93  E-value=3.2e-24  Score=211.41  Aligned_cols=308  Identities=13%  Similarity=0.081  Sum_probs=217.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~  172 (457)
                      .|++..++....+++++|++.|.+  ++++++||++|+.+++.++.    ++||+|+++.+.|++....+... ...|.+
T Consensus        45 ~Y~R~~~pt~~~L~~~lA~l~g~~--~~i~~~sg~~Ai~~~l~~l~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi~  118 (386)
T PRK08045         45 DYSRRGNPTRDVVQRALAELEGGA--GAVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYR  118 (386)
T ss_pred             eeeCCCCccHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHc----CCCCEEEEcCCCcHHHHHHHHHHHhhCCeE
Confidence            344444567889999999999964  49999999999999999888    89999999999999766554433 344667


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +.+++.     .|++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+..... ...++|++
T Consensus       119 v~~vd~-----~d~e~l~~~l~~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~~~p-l~~gaDiv  192 (386)
T PRK08045        119 VLFVDQ-----GDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPALQNP-LALGADLV  192 (386)
T ss_pred             EEEeCC-----CCHHHHHHhcccCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCCc-hhhCCCEE
Confidence            777652     489999999999999999999999999999999999999999999999999987654322 24578999


Q ss_pred             Eecccccc-CCCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIY-GPKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~-g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|++|++ |+.+  .|+++.++ +..+++......       ...+.++.....+..++    +.+..++++..+++..
T Consensus       193 v~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~-------~g~~~~p~~~~l~~rgl----~tl~~R~~~~~~na~~  261 (386)
T PRK08045        193 LHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN-------IGVTGGAFDSYLLLRGL----RTLVPRMELAQRNAQA  261 (386)
T ss_pred             EeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhh----ccHHHHHHHHHHHHHH
Confidence            99999955 5554  67777643 332333211111       11234444333333333    2478888999999999


Q ss_pred             HHHHHhhcCCCeEEe-CC--CC-----------CcccceEEEEEccc-c-chHHHhccc--CeEecccCccC----CCCC
Q 040741          329 LLNGIKEKLDGVVVN-GS--ME-----------RRYIGNLNLSFAYV-E-GESLLMGLK--EVAVSSGSACT----SASL  386 (457)
Q Consensus       329 l~~~l~~~~~~~~~~-~~--~~-----------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~~----~~~~  386 (457)
                      +.+.|++ .|.+.-+ -+  +.           ...++++.|.+++- + ...++..|+  .++++-|...+    +...
T Consensus       262 la~~L~~-~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~~~~~  340 (386)
T PRK08045        262 IVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAATM  340 (386)
T ss_pred             HHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcHHHHHHHHHhccceeEeccCCCCceeEeCCCCc
Confidence            9999999 7876432 11  11           13577888888631 1 245666664  44555565432    2222


Q ss_pred             Ch----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++..
T Consensus       341 ~~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~~~  383 (386)
T PRK08045        341 THAGMAPEARAAAGISE----TLLRISTGI----EDGEDLIADLENGFRAA  383 (386)
T ss_pred             ccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHHHHHh
Confidence            11    11233566664    899999997    78888888888888754

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.93  E-value=4.5e-24  Score=212.96  Aligned_cols=337  Identities=15%  Similarity=0.184  Sum_probs=221.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHH----HHHHHhCCCCCcE-EEeCChHHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARS----QIADLIGASPKEI-IFTSGATESNNVSIKG  137 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~la~~~g~~~~~i-~~t~g~T~a~~~al~~  137 (457)
                      +++.+.++|++++++...+.+.|+....++..++ + .+.+.++++    .+++++|.+.  + ++++||+.|+..++.+
T Consensus        34 ~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~-G-~~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A~~~~l~a  109 (416)
T PRK13034         34 IASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYG-G-CEFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQANGAVYLA  109 (416)
T ss_pred             cccccCCCHHHHHHhcchhhcCCCCCCCCCcccC-C-ChHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHHHHHHHHH
Confidence            4566788999999999997555553222222221 1 255677777    9999999874  5 5678999999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcch-HHHHHHHHhcCcEE--EEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccccccccc
Q 040741          138 VMHFYKDKKRHVITTQTEHKCV-LDSCRHLQQEGFEI--TYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~-~~~~~~~~~~G~~v--~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~  212 (457)
                      +.    ++||+|+++...|.+. ...++.. ..+...  ..++++ .++.+|++++++.++. ++++|+++..  .+|..
T Consensus       110 l~----~~GD~Vl~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~klVi~~~~--~~g~~  182 (416)
T PRK13034        110 LL----KPGDTILGMSLSHGGHLTHGAKVS-LSGKWYNAVQYGVDRLTGLIDYDEVEELAKEHKPKLIIAGFS--AYPRE  182 (416)
T ss_pred             hc----CCCCEEEEcCccceeeeecCCcce-eccceeeeEEcccccccCCcCHHHHHHHHhhcCCeEEEECCC--ccccc
Confidence            98    8999999999999883 3222211 012222  345554 3466899999998853 6788877543  36888


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC---CcccEEEecccccc-CCCCceEEEEecCCC-ccccccccCCcc
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK---WNVSLMSLSGHKIY-GPKGVGALYMRRRPR-IRVEPLINGGGQ  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~---~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~-~~~~~~~~~~~~  287 (457)
                      .|+++|.++|++||+++++|+||++|....+...   .++|++++|+||++ ||.| |+++.+++.. .+++.....+  
T Consensus       183 ~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~~~~~~~~~~~~--  259 (416)
T PRK13034        183 LDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEIAKKINSAVFPG--  259 (416)
T ss_pred             cCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHHHHHHHhhcCCc--
Confidence            8999999999999999999999998866433211   25899999999966 6776 7777665432 2233322111  


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccch
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGE  364 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  364 (457)
                         .. +.+.++..+++..++.... .+..+..++..++++++++.|.+ . |+.+..+. . -.+.+.+.+..  ....
T Consensus       260 ---~~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~-~-G~~~~~~~-~-~t~i~~v~~~~~~~~~~  331 (416)
T PRK13034        260 ---LQ-GGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKE-R-GYDLVSGG-T-DNHLLLVDLRPKGLSGK  331 (416)
T ss_pred             ---cc-CCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH-c-CCEeccCC-C-CCcEEEEEcCCCCCCHH
Confidence               11 1233444454444444443 23456679999999999999998 5 88776421 1 13444555542  2334


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .+...|  +||.+..-....             ...+......||++++.    .++++||+++++.|++++....
T Consensus       332 ~~~~~L~~~GI~v~~~~~p~-------------~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~~~  394 (416)
T PRK13034        332 DAEQALERAGITVNKNTVPG-------------DTESPFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDDLG  394 (416)
T ss_pred             HHHHHHHhCCcEEeccCCCC-------------CCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhcCC
Confidence            444555  477665311000             00111123689999887    5679999999999999987543

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.93  E-value=1.1e-23  Score=199.16  Aligned_cols=338  Identities=17%  Similarity=0.173  Sum_probs=231.0

Q ss_pred             cccccCCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE
Q 040741           50 KGVRIAGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF  123 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~  123 (457)
                      ..+....+.-|||+.+.-      ..+|.+.+++.+...+.+--+       ..-..+...++.+.|++..+ ..+.++|
T Consensus        34 ~~v~D~~G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~s-------n~~~~~~~~~la~~L~~~s~-~~d~vff  105 (404)
T COG4992          34 AYVWDQQGREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVS-------NLFYNEPQAELAEKLVELSP-FADRVFF  105 (404)
T ss_pred             cEEECCCCCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcc-------cccCChHHHHHHHHHHhhCc-cccEEEE
Confidence            344556677789866543      578999999999988764211       11223677888899999987 5667999


Q ss_pred             eCChHHHHHHHHHHhhhhhc-CCCCEEEEcCCCCcchHHHHHHH-H----hcCc-----EEEEEeCCCCCCCCHHHHHHh
Q 040741          124 TSGATESNNVSIKGVMHFYK-DKKRHVITTQTEHKCVLDSCRHL-Q----QEGF-----EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~-~~g~~vi~~~~~h~~~~~~~~~~-~----~~G~-----~v~~v~~~~~~~~d~~~le~~  192 (457)
                      ++|||||++.|++..+.+.. ..+.+||.....|.+.....-.+ .    +.++     .++++|.+     |+++++++
T Consensus       106 ~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~a  180 (404)
T COG4992         106 CNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAA  180 (404)
T ss_pred             cCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHH
Confidence            99999999999999887654 22446666555544443332222 1    1122     13334433     99999999


Q ss_pred             cCCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cc--cCCCCcccEEEecccc-ccCC
Q 040741          193 IRPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PV--DVEKWNVSLMSLSGHK-IYGP  262 (457)
Q Consensus       193 i~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~--~~~~~~~Di~~~s~~K-~~g~  262 (457)
                      |+++|..|+++.++...|++.|    ++++.++|++||+++|.|++|.. |..  .+  ......+||++..  | +.|.
T Consensus       181 i~~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tla--K~LgGG  258 (404)
T COG4992         181 IDEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLA--KALGGG  258 (404)
T ss_pred             hccCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEee--ccccCC
Confidence            9999999999999999999977    88999999999999999999964 211  11  1122347999887  9 5555


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                      ..+|+++.++.....+.+-.+|...       -.|+..+++..++++.+.+  +...++.+++.+++.+.|.+....+.+
T Consensus       259 ~PigA~la~~~~~~~~~~G~HgSTf-------GGNpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~~~~~  329 (404)
T COG4992         259 FPIGAMLATEEIASAFTPGDHGSTF-------GGNPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKRRYPL  329 (404)
T ss_pred             ccceeeEEchhhhhcCCCCcccCCC-------CcCHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence            5699999985444555555544221       3466677777778888876  666777777777887777762111111


Q ss_pred             eCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          343 NGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      +. .....+-++-+.+... ...++...+  +|+.+....                       .+.|||.++..+++|||
T Consensus       330 v~-~vRG~GLmiGiel~~~~~a~~~~~~~~~~gvL~~~a~-----------------------~~ViR~~PpL~i~~eei  385 (404)
T COG4992         330 VK-EVRGRGLMIGIELKEPYRARDIVRALREEGVLVLPAG-----------------------PNVIRFLPPLVITEEEI  385 (404)
T ss_pred             ee-eeecceeEEEEEecCcccHHHHHHHHHHCCeEEecCC-----------------------CCeEEecCCccCCHHHH
Confidence            11 1122244444555432 245666666  576664321                       27999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 040741          420 DRAIELTVKQVEKLRE  435 (457)
Q Consensus       420 d~~~~~l~~~~~~~~~  435 (457)
                      |.++++++++++....
T Consensus       386 ~~~~~~l~~~l~~~~~  401 (404)
T COG4992         386 DEALDALERALAAASA  401 (404)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            9999999999987643

>PRK05939 hypothetical protein; Provisional

Probab=99.93  E-value=3.2e-24  Score=212.00  Aligned_cols=314  Identities=17%  Similarity=0.151  Sum_probs=213.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      +.|++...+....+++.++++.|.+.  .+.+++|+.|+..++.++.    ++||+|+++...|++.......+...|++
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~~~--~v~~ssG~~Ai~~~l~all----~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~  112 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGGVG--TVCFATGMAAIAAVFLTLL----RAGDHLVSSQFLFGNTNSLFGTLRGLGVE  112 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCCe--EEEeCCHHHHHHHHHHHHc----CCCCEEEECCCccccHHHHHHHHHhcCCE
Confidence            34444445789999999999999865  6677778999999999887    89999999999998876655556667999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++..     |+++++++++++|++|++++++||+|.+.|+++|+++|+++|+++++|++++.+. .++....++|++
T Consensus       113 v~~v~~~-----d~e~l~~~l~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~-~~~~~~~gaDiv  186 (397)
T PRK05939        113 VTMVDAT-----DVQNVAAAIRPNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW-LFRPKDVGASLV  186 (397)
T ss_pred             EEEECCC-----CHHHHHHhCCCCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc-ccCccccCCEEE
Confidence            9999864     8999999999999999999999999999999999999999999999999998764 345556689999


Q ss_pred             EeccccccCCCC--ceEEEEecCCCcc-----ccccccCCc-----c--cc----ccccCCCChhHHHHHHHHHHHHHHh
Q 040741          253 SLSGHKIYGPKG--VGALYMRRRPRIR-----VEPLINGGG-----Q--ER----GIRSGTLPTPLIVGFGSACEIAKKE  314 (457)
Q Consensus       253 ~~s~~K~~g~~G--~G~l~~~~~~~~~-----~~~~~~~~~-----~--~~----~~~~~t~~~~~~~al~~al~~~~~~  314 (457)
                      +.|++|++++.|  +|.+++.+.....     +........     .  .+    ....+..++.....+..    -.+.
T Consensus       187 v~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~r----gl~t  262 (397)
T PRK05939        187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKKGLRDMGATLSSEAAHRIAI----GAET  262 (397)
T ss_pred             EecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHHHHHhcCCCCCHHHHHHHHc----CcCc
Confidence            999999776544  4555554322111     000000000     0  00    00111222222221111    1134


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc-cchHHHhccc--CeEecc
Q 040741          315 MDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV-EGESLLMGLK--EVAVSS  377 (457)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~  377 (457)
                      +.-++++..+++..+.+.|++ .|.+.-+.-|.              ...++++.|.+.+. +...++..++  ..+.+-
T Consensus       263 l~~R~~~~~~na~~la~~L~~-~p~V~~V~yP~l~~~p~~~~~~~~~~g~g~l~sf~~~~~~~~~~f~~~l~l~~~~~s~  341 (397)
T PRK05939        263 LALRVDRSCSNALALAQFLEA-HPKVARVYYPGLASHPQHARATELFRHYGGLLSFELADGIDCFDFLNRLKLVIKATHL  341 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCchHHHHHHhccCCceEEEEEeCCHHHHHHHHHhCCcceEccCC
Confidence            677788888899999999998 77653221111              24577787887632 2234555553  344444


Q ss_pred             cCccC----CCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          378 GSACT----SASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       378 g~~~~----~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      |...+    +....+    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++
T Consensus       342 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~----~lvR~svGl----Ed~~dLi~dl~~Al~  395 (397)
T PRK05939        342 GDTRTLVIPVAPTIYYEMGAERRASMGIAD----SLIRVSVGI----EDEADLIADFEQALD  395 (397)
T ss_pred             CCCCeeeecCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHHh
Confidence            54432    221111    11223556654    899999997    788999999998886

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.93  E-value=4.2e-24  Score=216.27  Aligned_cols=342  Identities=13%  Similarity=0.123  Sum_probs=223.3

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhh-ccCCCC--CCccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEE
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLS-RYGNPH--SRTHLFGWESEVAVETARSQIADLIG--------ASPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~p~--~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~~  123 (457)
                      ..+.|.|+.+.+..+.+.+.+.+...... ......  .......|.......++++.++++++        +++++|++
T Consensus        37 p~g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iii  116 (468)
T PLN02450         37 PSGIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVL  116 (468)
T ss_pred             CCeeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEE
Confidence            35678998877776665555554433210 000000  00000011111234456777777663        57888999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC------
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP------  195 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~------  195 (457)
                      |+|+++++.+++.+++    ++||.|+++.+.|+.+...+..  ..|++++.++.+  .+..+|++++++++.+      
T Consensus       117 t~Ga~~al~~l~~~l~----~pGd~Vlv~~P~Y~~~~~~~~~--~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~  190 (468)
T PLN02450        117 TAGATSANETLMFCLA----EPGDAFLLPTPYYPGFDRDLKW--RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNL  190 (468)
T ss_pred             ccChHHHHHHHHHHhC----CCCCEEEECCCCCCchHHHHhh--cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCC
Confidence            9999999999999998    8999999999999998776552  239999999875  3456788999988753      


Q ss_pred             CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhc---CCCcc----cC---------CCCcccEEEecc
Q 040741          196 DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQAL---GKIPV----DV---------EKWNVSLMSLSG  256 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~---g~~~~----~~---------~~~~~Di~~~s~  256 (457)
                      ++++|++++++||||.+++   +++|.++|++|+++||+|++++.   ...++    ..         ...+.-+++.|+
T Consensus       191 ~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~  270 (468)
T PLN02450        191 KVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSL  270 (468)
T ss_pred             CeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEec
Confidence            6889999999999999998   66788889999999999999973   21111    11         012334788899


Q ss_pred             ccccCCCC--ceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA---KKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~---~~~~~~~~~~~~~~~~~l~  330 (457)
                      +|.||.+|  +|++++.++.+ ..+....         ..+..+.....++..+++..   ...+.+.++++++.++.+.
T Consensus       271 SK~~~l~GlRiG~li~~~~~l~~~~~~~~---------~~~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~  341 (468)
T PLN02450        271 SKDLGLPGFRVGAIYSNDEMVVSAATKMS---------SFGLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLV  341 (468)
T ss_pred             cccCCCCCccEEEEEECCHHHHHHHHHHh---------hcCCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            99877555  99999875432 2222111         11233444444444444321   1235677788889999999


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccc------hHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEG------ESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +.|++ + ++.+..+. .  +.++.+.++. .+.      .++...+   .||.+.+|..|...                
T Consensus       342 ~~L~~-~-gi~~~~~~-~--g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~----------------  400 (468)
T PLN02450        342 SGLEA-A-GIKCLKSN-A--GLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCT----------------  400 (468)
T ss_pred             HHHHH-c-CCcccCCC-c--eEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCC----------------
Confidence            99988 5 66554321 1  2234444431 111      2333333   59999999765321                


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                       ..+++||+++. .++++++.++++|++++++..
T Consensus       401 -~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~~~~  432 (468)
T PLN02450        401 -EPGWFRVCFAN-MSEETLDLAMKRLKSFVESDS  432 (468)
T ss_pred             -CCCEEEEEecC-CCHHHHHHHHHHHHHHHHhcc
Confidence             12799999996 457999999999999986544

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.93  E-value=2.3e-24  Score=213.25  Aligned_cols=309  Identities=11%  Similarity=0.049  Sum_probs=214.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+.+.++++.++++.|.+  ++++++||++|+.+++.+++    ++||+||++.+.|.++...+. .+...|+
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g~~--~~l~~~sgt~Ai~~~l~al~----~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi  130 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEGGR--HALLQPSGLAAISLVYFGLV----KAGDDVLIPDNAYGPNRDHGEWLARDFGI  130 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCC--eEEEeccHHHHHHHHHHHHh----CCCCEEEEecCCcccHHHHHHHHHHhcCe
Confidence            3455555678899999999999975  59999999999999999997    899999999999998886553 3456699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++..     +.++++++++++|++|++++++||+|.+.++++|.++|+++|+++++|++++.+.. ......++|+
T Consensus       131 ~v~~vd~~-----~~~~l~~~i~~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~-~~~l~~GaDi  204 (394)
T PRK07050        131 TVRFYDPL-----IGAGIADLIQPNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLA-FKPFEHGVDI  204 (394)
T ss_pred             EEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccc-cCHHHcCCeE
Confidence            99988754     56789999999999999999999999999999999999999999999999988754 2333457899


Q ss_pred             EEeccccccC-CCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYG-PKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g-~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|+++ ..+  .|++++++ +..++++.....       ..++.++.....   ++.. ...+..++++..+++.
T Consensus       205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~-------~G~~~~~~~a~l---~lr~-l~tl~~Rl~~~~~~a~  273 (394)
T PRK07050        205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMR-------LGIGVSADDCSL---VLRG-LPSLQVRLAAHDRSAL  273 (394)
T ss_pred             EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHH---HHcC-CCcHHHHHHHHHHHHH
Confidence            9999999654 332  57777654 333333322211       111333222211   1111 2245667788888888


Q ss_pred             HHHHHHhhcCCCeEEeCCC--------------CCcccceEEEEEcc----ccchHHHhccc--CeEecccCccCCCC-C
Q 040741          328 RLLNGIKEKLDGVVVNGSM--------------ERRYIGNLNLSFAY----VEGESLLMGLK--EVAVSSGSACTSAS-L  386 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~l~--~i~~~~g~~~~~~~-~  386 (457)
                      ++.+.|++ .|.+..+-.+              ....++++.|.+..    .+...++..|+  +++++-|...+... .
T Consensus       274 ~la~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~  352 (394)
T PRK07050        274 EVAEWLKA-RPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSWGGACSLAMPY  352 (394)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeeccccCCccceEeeC
Confidence            99999988 6765432211              11245666666653    12345666663  66677776655331 0


Q ss_pred             Chh-HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EPS-YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~~-~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .++ ..+...+    ..++.|||+++.    ||+|.+++.|+++++..
T Consensus       353 ~~~~~~~~~~~----~~~~~iR~svGl----E~~~dl~~dl~~al~~~  392 (394)
T PRK07050        353 DVASMRTAKWP----HRGTLVRLYIGL----EDEADLIADLEQALEAA  392 (394)
T ss_pred             cccccchhhcC----CCCCEEEEEeCc----CCHHHHHHHHHHHHHHh
Confidence            000 1112222    334899999997    78888888888888753

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.93  E-value=1.8e-23  Score=201.06  Aligned_cols=335  Identities=14%  Similarity=0.069  Sum_probs=240.6

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccC---CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYG---NPHSRTHLFGWESEVAVETARSQIADLIGASPK-E-IIFTSGATESNNVS  134 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~-i~~t~g~T~a~~~a  134 (457)
                      |.-.+|+..+|++|++++.+.+.+..+   .... .+..+..+.+.+.++++.|+++++.+.+ + +++++|||.++.++
T Consensus         6 ~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~e-isHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~   84 (364)
T PRK12462          6 LNFSGGPGALPDTVLEQVRQAVVELPETGLSVLG-MSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMI   84 (364)
T ss_pred             ceecCCCcCCCHHHHHHHHHHHhcccccCccccc-cccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHH
Confidence            556778889999999999988876443   1111 2223567779999999999999999543 3 55566699999999


Q ss_pred             HHHhhhhhcCCCCEEE-EcCCCCcchHHHHHHHHhcCcEEEEEeC----CCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          135 IKGVMHFYKDKKRHVI-TTQTEHKCVLDSCRHLQQEGFEITYLPV----GADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi-~~~~~h~~~~~~~~~~~~~G~~v~~v~~----~~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +.+++    .+++.++ +-...+.+.. +.+.++..| ++..+..    +.+..++++++  .++++.+.|.+++..+.+
T Consensus        85 ~~Nll----~~g~~~~~~~~tG~fg~r-~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~~d~~~v~~t~NETst  156 (364)
T PRK12462         85 PMNFS----RPGAAAPEYVTTGYWSRK-AIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWDARAPFRHYVSNETVE  156 (364)
T ss_pred             HHHcC----CCCCcEEEEEeCCHHHHH-HHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccCCCCcEEEEccCCCCc
Confidence            99998    7787543 2223333332 244555556 5555542    22345666665  345677899999999999


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCcccccccc---CCc
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN---GGG  286 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~---~~~  286 (457)
                      |+..|     ++.+.+++++++|.+.++++.+++++++  |+++.+.+|.+||+|+++++++++++++..+...   .+.
T Consensus       157 Gv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~--dvi~agsQKnlgP~Gltvvivs~~al~~~~~~~p~~ldy~  229 (364)
T PRK12462        157 GLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY--GMVYAHAQKNLGPAGVTVAIIRRALLERVPDTLPPMLDFR  229 (364)
T ss_pred             eEecC-----cccccCCCeEEEEcCchhhCCCCChHHc--cEEEeeccccCCCCceEEEEECHHHHhhccccCCchhhHH
Confidence            99997     3334469999999999999999999986  9999999998889999999999998876554322   110


Q ss_pred             --cccccccCCCChhHHHHHHHHHHHHH-H--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CCCCCcccceEEEEEcc
Q 040741          287 --QERGIRSGTLPTPLIVGFGSACEIAK-K--EMDYDHKRITALHDRLLNGIKEKLDGVVVN-GSMERRYIGNLNLSFAY  360 (457)
Q Consensus       287 --~~~~~~~~t~~~~~~~al~~al~~~~-~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~  360 (457)
                        ...+..+.||++..++++..+++++. +  +++.+.++.+++++.+++.+.+ .+++-.. .+++.+...++.|.+..
T Consensus       230 ~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~-~~~~~~~~~~~~~RS~mnv~f~~~~  308 (364)
T PRK12462        230 THVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDA-LNEVIDCHAHRAARSTMNVAFRFRQ  308 (364)
T ss_pred             HHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHh-CCCcccCCCChhhcCcceEEEEcCC
Confidence              11233456999999999999999985 4  6999999999999999999999 7755443 44455555555555443


Q ss_pred             cc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          361 VE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       361 ~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+ ..+++...  +|+.-..|.                     ..-+.+|+++-..++.|+++.|++.|+++-++
T Consensus       309 ~~l~~~f~~~a~~~gl~~lkGh---------------------r~vgg~Ras~yna~~~e~v~~L~~fm~~f~~~  362 (364)
T PRK12462        309 PRLDTLFKEQSTEAGFCGLSGH---------------------RSIGGIRASLYNAVSEQAVSRLCAFLKDFAIR  362 (364)
T ss_pred             HHHHHHHHHHHHHCCCccccCC---------------------cccCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence            21 12333333  354433332                     11267999999999999999999999998765

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.93  E-value=9.6e-24  Score=209.91  Aligned_cols=292  Identities=21%  Similarity=0.260  Sum_probs=225.5

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~a  134 (457)
                      +...++-..+++.+++.+.+++..++....+++...     ......-+++..+++++++++ .....||+|||+|+.++
T Consensus        61 ~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~~~-----p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~la  135 (460)
T COG0076          61 HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDES-----PAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLA  135 (460)
T ss_pred             CcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcccC-----hhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHH
Confidence            344556666777889999999999998776665542     244467777899999999995 34599999999999999


Q ss_pred             HHHhhhhhcC-C---------CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceE--EE
Q 040741          135 IKGVMHFYKD-K---------KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGL--IS  201 (457)
Q Consensus       135 l~~~~~~~~~-~---------g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~l--i~  201 (457)
                      +.+....+.+ .         ...|+++...|+|+.++++++   |+.+..++... +..+|+++++++|++++..  |+
T Consensus       136 l~aar~~~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~l---G~~~~~v~~~~~~~~id~~~l~~~i~~~t~~g~vV  212 (460)
T COG0076         136 LLAARERWRKRALAESGKPGGKPNIVCSETAHFSFEKAARYL---GLGLRRVPTVPTDYRIDVDALEEAIDENTIGGVVV  212 (460)
T ss_pred             HHHHHHHHHHHhhhcccccCCCCeEEecCcchhHHHHHHHHh---CCCceeEEeccCccccCHHHHHHHHHhhccCceEE
Confidence            9988865531 1         237999999999999999999   99999888886 7899999999999999887  88


Q ss_pred             EeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-------cCCCCcccEEEecccc-ccCCCCceEEEEecC
Q 040741          202 VMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-------DVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR  273 (457)
Q Consensus       202 i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-------~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~  273 (457)
                      .....+++|.+.|+++|.++|++|++++|+|+|.+....++       ++.-.++|.+++++|| .+.|.|+|+++++++
T Consensus       213 ~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~  292 (460)
T COG0076         213 GTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDE  292 (460)
T ss_pred             EEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECH
Confidence            88899999999999999999999999999999998765543       2222368999999999 577999999999997


Q ss_pred             -CCccc---cccccCC-ccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          274 -PRIRV---EPLINGG-GQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       274 -~~~~~---~~~~~~~-~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                       ...+.   .....++ ........++.+....+++...+..+ .+++.++.++..++++++.+.|++ .+.+.+..++ 
T Consensus       293 e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~-~~~~e~~~~p-  370 (460)
T COG0076         293 EALRRILIFADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEK-LGDFELVNEP-  370 (460)
T ss_pred             HHhhhhhhcccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHh-CCCcEeecCC-
Confidence             33322   1222222 11111122344444555555555555 578999999999999999999999 7789998865 


Q ss_pred             CcccceEEEEEc
Q 040741          348 RRYIGNLNLSFA  359 (457)
Q Consensus       348 ~~~~~~~~~~~~  359 (457)
                        ..+.+.|..+
T Consensus       371 --~l~~V~fr~~  380 (460)
T COG0076         371 --ELPIVAFRLK  380 (460)
T ss_pred             --ccceEEEEcC
Confidence              3566666663

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.93  E-value=1.5e-23  Score=206.35  Aligned_cols=332  Identities=17%  Similarity=0.144  Sum_probs=219.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++.++++.+.+.+.+        ..+.  .+...++++++++++|.+  ++++|+|||+|+.+++.++..   ++||
T Consensus         8 ~~~~~e~~a~~~~~~~~~--------~~~~--g~~~~~~e~~la~~~g~~--~~v~~~sgt~aL~~~l~al~~---~pGd   72 (376)
T TIGR02379         8 PVTGQELEYIAEAISEGK--------LSGD--GPFSRRCETWLENRTGTK--KALLTPSCTAALEMAALLLDI---QPGD   72 (376)
T ss_pred             CCCHHHHHHHHHHHHcCC--------ccCC--cHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC---CCcC
Confidence            467778899998886522        1111  257889999999999875  499999999999999888722   8999


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK  226 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~  226 (457)
                      +||++.++|.+...++...   |+++++++++.+ +.+|++++++++++++++|++.   +++|...++++|.++|++||
T Consensus        73 ~Viv~~~t~~~~~~~~~~~---G~~~v~vd~d~~~~~~d~~~le~~i~~~tk~Iip~---~~~G~~~d~~~I~~la~~~~  146 (376)
T TIGR02379        73 EVIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIESAITHRTKAIVPV---HYAGVACDMDTIMALANKHQ  146 (376)
T ss_pred             EEEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEEEe---CCCCCccCHHHHHHHHHHCC
Confidence            9999999999998877655   999999999865 5799999999999999998744   46899999999999999999


Q ss_pred             CcEEEehhhhcCCCcccCCCCc--ccEEEeccc--ccc--CCCCceEEEEe-cCCCccccccccCCcccc-cc-------
Q 040741          227 IPFHTDAAQALGKIPVDVEKWN--VSLMSLSGH--KIY--GPKGVGALYMR-RRPRIRVEPLINGGGQER-GI-------  291 (457)
Q Consensus       227 v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~--K~~--g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~-~~-------  291 (457)
                      ++||+|++|+.|.. .+....+  .|+.++|+|  |.+  |+.| |+++.+ ++..++++.....+.... ..       
T Consensus       147 i~vIeDaa~~~g~~-~~~~~~g~~~~~~~fSf~~~K~l~~g~~g-G~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  224 (376)
T TIGR02379       147 LFVIEDAAQGVMST-YKGRALGSIGHLGTFSFHETKNYTSGGEG-GALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY  224 (376)
T ss_pred             CEEEEECccccCCc-cCCcccCCCCCEEEEeCCCCCcCcccCCc-eEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence            99999999998864 2222222  266777765  433  3455 777766 455566665544321100 00       


Q ss_pred             ---ccCC-CChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCC--C-eEEeCCCCCcccc--eEEEEEcc-
Q 040741          292 ---RSGT-LPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLD--G-VVVNGSMERRYIG--NLNLSFAY-  360 (457)
Q Consensus       292 ---~~~t-~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~~~~~~~~~~~~--~~~~~~~~-  360 (457)
                         ..|. .....+.   +|+-.. .+.+++..++.+++++++.+.|.+ ++  + ..+...++.....  ...+.++. 
T Consensus       225 ~~~~~g~n~~~~~~~---Aa~g~~qL~~l~~~~~~r~~~~~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  300 (376)
T TIGR02379       225 TWRDIGSSYLPSELQ---AAYLWAQLEQADRINQDRLATWQLYQDALKP-LEEKGIIELPSIPNGCQHNAHMFYIKLKDE  300 (376)
T ss_pred             eeeeecccCCccHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-CCcCCeeeCCCCCCCCeeeeEEEEEEECCc
Confidence               0011 0111111   222211 234677777888888888888877 54  2 3333222222122  22233322 


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC-------CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV-------DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~-------~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+.+++...|  +||....+.  .+....|-+  +.++.       .+....+.|.+.+....+++|++++++.|++++
T Consensus       301 ~~r~~l~~~L~~~gI~~~~~~--~p~~~~~~~--~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~~~  375 (376)
T TIGR02379       301 DDRNELIKYLKEQEIMAVFHY--VPLHSSPAG--RYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICDYL  375 (376)
T ss_pred             CCHHHHHHHHHHCCCCccccC--cCCCcchhH--HhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            2457777777  576655432  233333322  11211       112235789999999999999999999999864

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.93  E-value=1.1e-24  Score=214.53  Aligned_cols=307  Identities=15%  Similarity=0.134  Sum_probs=211.4

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|++...+....+++.++++.|.+.  .+++++|+.|+.+++ .+.    ++|++|+++++.|++....+. .+...|++
T Consensus        43 ~y~r~~~p~~~~Le~~la~l~g~~~--al~~~SG~~Al~~~l-~~l----~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi~  115 (380)
T PRK06176         43 EYSRSGNPTRFALEELIADLEGGVK--GFAFASGLAGIHAVF-SLF----QSGDHVLLGDDVYGGTFRLFDKVLVKNGLS  115 (380)
T ss_pred             cccCCCChhHHHHHHHHHHHhCCCC--EEEECCHHHHHHHHH-HHc----CCCCEEEEcCCChhHHHHHHHHHHHhcCeE
Confidence            3444555788999999999999765  678888999998655 455    799999999999887765544 34566999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... .+++|++
T Consensus       116 v~~vd~~-----d~e~l~~ai~~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~~p~-~~gaDiv  189 (380)
T PRK06176        116 CTIIDTS-----DLSQIKKAIKPNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQNPL-LLGADIV  189 (380)
T ss_pred             EEEcCCC-----CHHHHHHhcCcCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccCCcc-ccCCCEE
Confidence            9888754     899999999999999999999999999999999999999999999999999865433222 4689999


Q ss_pred             EeccccccC-CCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYG-PKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~g-~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++|++|+++ +..  .|+++.+++ ..+++.......+       ...++.....+..    ....+..++++..+++.+
T Consensus       190 v~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G-------~~~~~~~~~l~~~----gl~tl~~R~~~~~~~a~~  258 (380)
T PRK06176        190 VHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIG-------GVLGPQDSWLLQR----GIKTLGLRMEAHQKNALC  258 (380)
T ss_pred             EecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhc-------CCCCHHHHHHHHh----ccCcHHHHHHHHHHHHHH
Confidence            999999665 432  577776543 2233322221111       1222222211111    112356777788888889


Q ss_pred             HHHHHhhcCCCeEEeCCC--------------CCcccceEEEEEccc-cchHHHhccc--CeEecccCcc----CCCCCC
Q 040741          329 LLNGIKEKLDGVVVNGSM--------------ERRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSAC----TSASLE  387 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~----~~~~~~  387 (457)
                      +.+.|++ .|.+.-+-.+              ...+++++.|.+... ....++..|+  .++++-|...    .+....
T Consensus       259 la~~L~~-~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~~~~~~~s~G~~~sl~~~p~~~~  337 (380)
T PRK06176        259 VAEFLEK-HPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKNDSEAVAFVESLKLFILGESLGGVESLVGIPAFMT  337 (380)
T ss_pred             HHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCHHHHHHHHHcCCcceEccCCCCCCceeeCCcccc
Confidence            9999988 7776432111              113467778887532 1234555553  4555556542    222221


Q ss_pred             h----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          388 P----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       388 ~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +    .-.....|+.+    +.||++++.    ||+|.+++.|+++++++
T Consensus       338 ~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dli~dl~~Al~~~  379 (380)
T PRK06176        338 HACIPKEQREAAGIRD----GLVRLSVGI----EHEQDLLEDLEQAFAKI  379 (380)
T ss_pred             cccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHhhc
Confidence            1    11234567665    899999996    78999999999988754

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.93  E-value=3.6e-24  Score=197.85  Aligned_cols=325  Identities=15%  Similarity=0.154  Sum_probs=243.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .-.|+|++||.+.+..+.+..+......  +......++|+.||++-+.+. .++|++ .--|+...+..+.+.  -||+
T Consensus       185 s~Hp~V~~A~~~tl~~hG~GAGGTRNIs--G~s~~hv~LE~eLA~LHqK~a-ALlFsS-CfVANDstLftLak~--lpgc  258 (570)
T KOG1360|consen  185 SRHPEVLDAMHDTLDRHGAGAGGTRNIS--GHSKHHVRLEAELADLHQKEA-ALLFSS-CFVANDSTLFTLAKK--LPGC  258 (570)
T ss_pred             cCChHHHHHHHHHHHHcCCCcCCccccC--CCCchhhhHHHHHHHHhcCcc-eeeeee-eeeccchHHHHHHHH--CCCc
Confidence            3468899999999987643322222222  233678899999999999765 255554 666788888877753  5899


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccccccccChHHHHHHHH
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNEIGVIQPMEEIGQICK  223 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~~~~l~~i~~l~~  223 (457)
                      +|+.+..+|.+.+..++..   +..-..+..+     |++.|++++..    -+++|.++.++++.|.+.|+++|+++++
T Consensus       259 ei~SD~gNHASMI~GIrns---~v~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhSM~GavcpleelcDvah  330 (570)
T KOG1360|consen  259 EIFSDEGNHASMIQGIRNS---RVPKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCPLEELCDVAH  330 (570)
T ss_pred             EEeccccchHHHHHHhhhc---CCcceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCCHHHHHHHHH
Confidence            9999999999999999887   7666666666     88999888853    4789999999999999999999999999


Q ss_pred             hcCCcEEEehhhhcCCCcc---cCC-----CCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          224 EFKIPFHTDAAQALGKIPV---DVE-----KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       224 ~~~v~li~D~a~~~g~~~~---~~~-----~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      +||.+.++|++|++|-...   .+.     -..+||+++++.|.||.-| |++...+.+++-++.+..|.     +...+
T Consensus       331 ~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG-GYIAat~~LvDmiRSyAaGF-----IFTTS  404 (570)
T KOG1360|consen  331 KYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG-GYIAATRKLVDMIRSYAAGF-----IFTTS  404 (570)
T ss_pred             HhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc-ceehhhhhHHHHHHHhcCce-----EEecC
Confidence            9999999999998764421   111     1257999999999999997 99999999888888777664     33446


Q ss_pred             CChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc---
Q 040741          296 LPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL---  370 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l---  370 (457)
                      .|+..+.++..++++... +-...+...+++.+++++.|.+  .|+.+...+..    ++-+.+.+.. ..++.+.|   
T Consensus       405 LPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~--~GiPVi~~pSH----IiPv~vgda~l~~~~sd~Li~~  478 (570)
T KOG1360|consen  405 LPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLME--LGIPVIPNPSH----IIPVRVGDAALAKQASDILISK  478 (570)
T ss_pred             CChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH--cCCcccCCCcc----eeeeeccCHHHHHHHHHHHHHh
Confidence            777788888888888765 3566777788899999999998  58877765533    2223332211 11222222   


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .+|++..-.+.+.                ..+...+||.++..+|.+.++.+++.|.++++++.
T Consensus       479 h~iYvQaINyPTV----------------~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~  526 (570)
T KOG1360|consen  479 HNIYVQAINYPTV----------------ARGTERLRIAPTPHHTPQMMNILVNALLDVWNEVG  526 (570)
T ss_pred             cCeEEEeccCCcc----------------cccceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            6787765433322                23457999999999999999999999999998764

>PRK10534 L-threonine aldolase; Provisional

Probab=99.93  E-value=6e-24  Score=207.21  Aligned_cols=310  Identities=17%  Similarity=0.201  Sum_probs=205.7

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      |.|..+.++.++|.+.+++.+.....        ..  |...+...++++.+++++|.++  +++++||++++.+++.++
T Consensus         2 ~~~~~~~~~~p~~~~~~a~~~~~~~~--------~~--Y~~~~~~~~L~~~la~~~g~~~--~~v~~~g~~a~~~~l~~~   69 (333)
T PRK10534          2 IDLRSDTVTRPSRAMLEAMMAAPVGD--------DV--YGDDPTVNALQDYAAELSGKEA--ALFLPTGTQANLVALLSH   69 (333)
T ss_pred             cccccccCCCCCHHHHHHHHhccCCC--------cc--cCCCHHHHHHHHHHHHHhCCCe--EEEeCchHHHHHHHHHHh
Confidence            45566666678899999987654322        11  1123678899999999999876  678889999998888887


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHH--HHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccccccc
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDS--CRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEIG  210 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~--~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~G  210 (457)
                      .    ++|++|+++.+.|.....+  +...  .+.+++.++.+.++.+|++++++++++      ++++|++++++  +|
T Consensus        70 ~----~~gd~vi~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G  141 (333)
T PRK10534         70 C----ERGEEYIVGQAAHNYLYEAGGAAVL--GSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH--NG  141 (333)
T ss_pred             c----CCCCeeEEechhhhhHhcCCchHHh--cCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC--CC
Confidence            7    8999999988777544332  2222  246778888777788999999999976      58899998655  59


Q ss_pred             cccChH---HHHHHHHhcCCcEEEehhhhcCCC---cccCC--CCcccEEEeccccccCCCCce-EEEEecCCCcccccc
Q 040741          211 VIQPME---EIGQICKEFKIPFHTDAAQALGKI---PVDVE--KWNVSLMSLSGHKIYGPKGVG-ALYMRRRPRIRVEPL  281 (457)
Q Consensus       211 ~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~---~~~~~--~~~~Di~~~s~~K~~g~~G~G-~l~~~~~~~~~~~~~  281 (457)
                      .+.|.+   +|.++|++|++++++|+|+.++..   .....  ....|.++.|+||.||.. +| +++.+++.++++...
T Consensus       142 ~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~-~G~~~~~~~~~i~~~~~~  220 (333)
T PRK10534        142 KVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTP-VGSLLVGNRDYIKRARRW  220 (333)
T ss_pred             eecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCc-ccceEEcCHHHHHHHHHH
Confidence            999865   456789999999999999875421   11110  012466677899988865 56 677777666655443


Q ss_pred             ccCCccccccccCCCCh--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          282 INGGGQERGIRSGTLPT--PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~--~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      ...++       +..+.  ....+...+++    ...+..++..+.++++.+.|.+ + ++.+..+    ..+++.+.++
T Consensus       221 ~~~~~-------~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~----~~nfv~~~~~  283 (333)
T PRK10534        221 RKMTG-------GGMRQAGILAAAGLYALK----HNVARLQEDHDNAAWLAEQLRE-A-GADVMRQ----DTNMLFVRVG  283 (333)
T ss_pred             HHHhC-------CchhhHHHHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHh-C-CCccCCC----CceEEEEECC
Confidence            32110       01111  11222222222    1123333455567889999998 4 7766542    1445555554


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ..+...+...|  +||.+.++                         ..+|++....+|+|++++++++|++++.
T Consensus       284 ~~~~~~~~~~l~~~gi~v~~~-------------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        284 EEQAAALGEYMRERNVLINAS-------------------------PIVRLVTHLDVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             chhHHHHHHHHHHcCeeecCC-------------------------ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence            32334555555  68887654                         3578887666789999999999987654

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.93  E-value=1.3e-23  Score=208.28  Aligned_cols=337  Identities=16%  Similarity=0.129  Sum_probs=223.9

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++.++++.+.+.+.+       .  .+  .+...++|+.+++++|.+.  .++++|||+|+.+++.++..   ++||
T Consensus         7 ~~~~~~~~~v~~~~~~~~-------~--~~--g~~~~~le~~la~~~g~~~--~v~~~sgt~al~~~l~al~~---~~Gd   70 (380)
T TIGR03588         7 SIDQDDIDAVVEVLKSDF-------L--TQ--GPTVPAFEEALAEYVGAKY--AVAFNSATSALHIACLALGV---GPGD   70 (380)
T ss_pred             CCCHHHHHHHHHHHhcCC-------c--cC--ChhHHHHHHHHHHHHCCCe--EEEEcCHHHHHHHHHHHcCC---CCCC
Confidence            456777888888776421       1  11  1457889999999999853  67777899999999998832   7899


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHHH
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQIC  222 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l~  222 (457)
                      +|+++.++|.+...++...   |+++++++++ .++.+|+++++++++    +++++|++.+   ++|...++++|.++|
T Consensus        71 ~Viv~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~~~~i~~l~  144 (380)
T TIGR03588        71 RVWTTPITFVATANCALYC---GAKVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVDMQAIAALA  144 (380)
T ss_pred             EEEeCCcchHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCCHHHHHHHH
Confidence            9999999999988776655   9999999996 467799999999998    7888888655   489999999999999


Q ss_pred             HhcCCcEEEehhhhcCCCcccCCCCcc----cEEEeccc--cccCCCCceEEEEecC-CCccccccccCCccc-c-----
Q 040741          223 KEFKIPFHTDAAQALGKIPVDVEKWNV----SLMSLSGH--KIYGPKGVGALYMRRR-PRIRVEPLINGGGQE-R-----  289 (457)
Q Consensus       223 ~~~~v~li~D~a~~~g~~~~~~~~~~~----Di~~~s~~--K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~-~-----  289 (457)
                      ++||+++|+|++|++|.. ++....+.    |+.++|+|  |+++.+..|+++.+++ ..++++....++... .     
T Consensus       145 ~~~~~~lI~D~a~a~g~~-~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~  223 (380)
T TIGR03588       145 KKHGLKIIEDASHALGAE-YGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEK  223 (380)
T ss_pred             HHcCCEEEEECCCcccCc-cCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCcccccc
Confidence            999999999999999875 44444445    99999987  7665433476666543 334444332221100 0     


Q ss_pred             ------ccccCCCChh-HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cccceEEEEEc
Q 040741          290 ------GIRSGTLPTP-LIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--RYIGNLNLSFA  359 (457)
Q Consensus       290 ------~~~~~t~~~~-~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~  359 (457)
                            .+..+..... .+..+.+++... .+.++++.++.+++++++.+.|.+ ++++.+...+..  .......+.+.
T Consensus       224 ~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~i~~~  302 (380)
T TIGR03588       224 QDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKLDRFVAKRREIAARYDRLLKD-LPYFTPLTIPLGSKSAWHLYPILLD  302 (380)
T ss_pred             cccCcceeeeeccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCCCCCCCCEeEEEEEEEEEC
Confidence                  0000111000 011112222211 234788889999999999999999 887765543211  11222233343


Q ss_pred             c---ccchHHHhcc--cCeEecccCccCCCCCChhHHH--H--HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          360 Y---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVL--R--ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       360 ~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l--~--~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .   .+.+++...|  +||.++...  .+....|-+.-  .  .+...+....+.|++.+....+++|++++++.|++++
T Consensus       303 ~~~~~~r~~l~~~L~~~gI~~~~~~--~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~~  380 (380)
T TIGR03588       303 QEFGCTRKEVFEALRAAGIGVQVHY--IPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKVL  380 (380)
T ss_pred             CcCCCCHHHHHHHHHHCCCCcccCC--cccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence            1   3567777777  577766443  22222221110  0  0111122345899999999999999999999998763

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.9e-23  Score=203.58  Aligned_cols=309  Identities=16%  Similarity=0.147  Sum_probs=211.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ...++|+.+.+. +.++.+++++.+.+....   .   ..|.   .....++++.+++++|++++++++|+|+++++.++
T Consensus        18 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~Y~---~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~   88 (337)
T PRK03967         18 NYRIWLDKNENPFDLPEELKEEIFEELKRVP---F---NRYP---HITSDPLREAIAEFYGLDAENIAVGNGSDELISYL   88 (337)
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHhhcCc---c---ccCC---CCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHH
Confidence            356899988877 678999999988764310   0   0111   12457899999999999999999999999999876


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +..+      +|++|++..+.|+.+...++..   |.+++.++.+.++.+|++++++++ ++++++++++++||||.+.+
T Consensus        89 ~~~~------~gd~V~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~~-~~~~~v~~~~P~NPtG~~~~  158 (337)
T PRK03967         89 VKLF------EGKHIVITPPTFGMYSFYAKLN---GIPVIDVPLKEDFTIDGERIAEKA-KNASAVFICSPNNPTGNLQP  158 (337)
T ss_pred             HHHh------CCCeEEEeCCChHHHHHHHHHc---CCeEEEeecCCCCCcCHHHHHHhc-cCCCEEEEeCCCCCCCCCCC
Confidence            6543      5899999999998766555544   999999998877789999999875 57788889999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCC-c-cc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCcccc
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKI-P-VD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQER  289 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~-~-~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~  289 (457)
                      .++|.++++ +++++++|+++.-... . .. ......-+++.|++|.||.+|  +|+++++++.++++......     
T Consensus       159 ~~~l~~i~~-~~~~ii~De~y~~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~~~i~~~~~~~~~-----  232 (337)
T PRK03967        159 EEEILKVLE-TGKPVVLDEAYAEFSGKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANEEIIDALYRIKPP-----  232 (337)
T ss_pred             HHHHHHHHh-cCCEEEEECchhhhcccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCHHHHHHHHhhcCC-----
Confidence            999999995 7999999999973211 1 01 111123477889999888555  99999987766655443321     


Q ss_pred             ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhc
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMG  369 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (457)
                          ...+.....++..+++.. +.+.+..++..+.++.+.+.|.+ .    ..  +..  ..++.+.++      +...
T Consensus       233 ----~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~r~~l~~~L~~-~----~~--~~~--~~~~~~~~~------~~~~  292 (337)
T PRK03967        233 ----FSLNILTMKIVRLALDHY-DLIEERIDYIIKERERVRRELGE-Y----AY--PSD--ANFLLLKLD------AYDY  292 (337)
T ss_pred             ----CCCCHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHhcc-C----cC--CCC--CcEEEEhHH------HHHH
Confidence                133444444444444321 23344445556666677777766 2    11  111  233322221      3333


Q ss_pred             c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          370 L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       370 l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      |  +||.++.+..                    ...+++||+++   +.++.++++++|+++.+.
T Consensus       293 l~~~gi~v~~~~~--------------------~~~~~~Ri~~~---~~~~~~~l~~~l~~~~~~  334 (337)
T PRK03967        293 LLENGIVVRKLSG--------------------RLEGHIRVTVG---KREENDEFIKALKEIKEG  334 (337)
T ss_pred             HHHCCEEEEeCCC--------------------CCCCeEEEecC---CHHHHHHHHHHHHHHHHh
Confidence            3  6888875321                    11279999988   478888888888876654

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.93  E-value=7.9e-24  Score=208.12  Aligned_cols=305  Identities=16%  Similarity=0.141  Sum_probs=208.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++..++...++++.++++.|++.  .++++||++|+.+++ .+.    ++|++|++..+.|++...... .+...|+
T Consensus        44 ~~y~r~~~pt~~~le~~la~l~g~~~--~~~~~sG~~ai~~~~-~ll----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~  116 (366)
T PRK08247         44 FDYSRTGNPTRGVLEQAIADLEGGDQ--GFACSSGMAAIQLVM-SLF----RSGDELIVSSDLYGGTYRLFEEHWKKWNV  116 (366)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHH-HHh----CCCCEEEEecCCcCcHHHHHHHHhhccCc
Confidence            34455555788999999999999976  688888999998765 565    789999999999988765444 3455699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++..     |++++++++++++++|++++++||+|.+.++++|.++|+++|+++++|++++.+...... ..+.|+
T Consensus       117 ~v~~vd~~-----d~~~l~~~i~~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~~p~-~~g~di  190 (366)
T PRK08247        117 RFVYVNTA-----SLKAIEQAITPNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQRPL-EEGADI  190 (366)
T ss_pred             eEEEECCC-----CHHHHHHhcccCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccCch-hcCCcE
Confidence            99998764     899999999999999999999999999999999999999999999999999655332222 347899


Q ss_pred             EEeccccccCC-CC--ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGP-KG--VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~-~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|++++ .+  .|+++.+ ++...++.......       ....++.....+..++    +.+..++++.+++++
T Consensus       191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~-------g~~~s~~~a~l~~~~l----~tl~~r~~~~~~~a~  259 (366)
T PRK08247        191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA-------GAVLSPFDSWLLIRGM----KTLALRMRQHEENAK  259 (366)
T ss_pred             EEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhc-------CCCCChHHHHHHHhcc----CcHHHHHHHHHHHHH
Confidence            99999996654 22  5777775 33333333222211       1123332222222222    245667777899999


Q ss_pred             HHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-chHHHhccc--CeEecccCcc----CCCCCC----hhHHHHHcC
Q 040741          328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGLK--EVAVSSGSAC----TSASLE----PSYVLRALG  396 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~----~~~~~~----~~~~l~~~g  396 (457)
                      .+.+.|++ .|++..+..+.  .++++.|.+...+ ...++..++  .++.+-|...    .|....    +.......|
T Consensus       260 ~l~~~L~~-~p~v~~v~~P~--~gg~~sf~~~~~~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~~~~~~~~~~~r~~~g  336 (366)
T PRK08247        260 AIAAFLNE-QPGVTDVLYPG--RGGMLSFRLQDEEWVNPFLKSLKLITFAESLGGVESFITYPATQTHADIPEEIRIANG  336 (366)
T ss_pred             HHHHHHHh-CCCeeEEecCC--cCcEEEEEECCHHHHHHHHHcCCcceEccCCCCCceEEECCcccccccCCHHHHHhcC
Confidence            99999999 78876432221  2556666654211 123444442  3333333221    122111    122333456


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.+    +.+||+++.    |+++.+++.|++++++
T Consensus       337 i~~----~~~R~svGl----E~~~dl~~dl~~al~~  364 (366)
T PRK08247        337 VCN----RLLRFSVGI----ENVEDLIADLKQAFKQ  364 (366)
T ss_pred             CCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence            654    899999996    7888899999998875

>PRK05839 hypothetical protein; Provisional

Probab=99.93  E-value=5.6e-23  Score=203.22  Aligned_cols=324  Identities=14%  Similarity=0.058  Sum_probs=208.1

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNV  133 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~  133 (457)
                      +.+.|+.+.+. +.++.+.+++.+.......+|..      .+..+..+.+.+.+++..|  +++++|++|+|+++++.+
T Consensus        25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~~------~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~   98 (374)
T PRK05839         25 KGLDLTIGEPQFETPKFIQDALKNNAHLLNKYPKS------AGEESLREAQRGFFKRRFKIELKENELIPTFGTREVLFN   98 (374)
T ss_pred             CeEEcCCCCCCCCCCHHHHHHHHHHhhccCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHH
Confidence            66777776665 56777888877654322111111      1112344445555556556  578899999999999988


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++..++.  .++|+.|+++.+.|+.+...++..   |++++.++.+.+  ..+|+++.  .+ +++++|+++++|||||.
T Consensus        99 ~~~~~~~--~~~gd~vlv~~P~y~~~~~~~~~~---g~~v~~v~~~~~~~~~~d~~~~--~~-~~~k~v~i~nP~NPTG~  170 (374)
T PRK05839         99 FPQFVLF--DKQNPTIAYPNPFYQIYEGAAIAS---RAKVLLMPLTKENDFTPSLNEK--EL-QEVDLVILNSPNNPTGR  170 (374)
T ss_pred             HHHHHhc--CCCCCEEEECCCCchhhHHHHHhc---CCEEEEeecccccCCcCCcchh--hh-ccccEEEEeCCCCCcCc
Confidence            8777641  047899999999999998887665   999999998743  34444433  23 46899999999999999


Q ss_pred             ccC---hHHHHHHHHhcCCcEEEehhhhcCCC--cc-c---------CCCCcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          212 IQP---MEEIGQICKEFKIPFHTDAAQALGKI--PV-D---------VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       212 ~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--~~-~---------~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      +.+   +++|+++|+++|++|++|++++--..  +. .         ....+.-+++.|++|.||.+|  +|+++.+++.
T Consensus       171 ~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~ii~~~~~  250 (374)
T PRK05839        171 TLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGLRSGFIAGDASI  250 (374)
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEeccccccCCccceeEEEecCHHH
Confidence            988   66788889999999999999873211  11 1         011234478899999877665  9999998766


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      ++++.......       ....+.....++..++.. .+.+++..++++++++.+.+.|..     .   .+..  ..++
T Consensus       251 ~~~~~~~~~~~-------~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-----~---~p~g--g~fi  312 (374)
T PRK05839        251 LKKYKAYRTYL-------GCASPLPLQKAAAVAWLD-DEHAEFFRNIYAKNLKLAREILGI-----T---IPPA--TFYV  312 (374)
T ss_pred             HHHHHHHHhhc-------CCCCChHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHhcCC-----C---CCCe--eEEE
Confidence            55554332110       112333333333333321 233566667777777666654422     1   1111  2333


Q ss_pred             EEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          355 NLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .+.++  +..++...+   +||.+.+|..+..              . ....+++||+++.  +.++++.++++|.++++
T Consensus       313 ~~~~~--~~~~~~~~l~~~~gi~v~pg~~f~~--------------~-~~~~~~iRis~~~--~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        313 WLPVD--NDEEFTKKLYQNEGIKVLPGSFLGR--------------N-GIGKGYVRIALVY--DTPKLEKALEIIKTYLE  373 (374)
T ss_pred             EEeCC--ChHHHHHHHHHHCCEEEeCchhhCC--------------C-CCCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence            33333  455666655   5899998864321              1 1123899999975  58999999999988764

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.93  E-value=1.8e-23  Score=209.41  Aligned_cols=334  Identities=16%  Similarity=0.132  Sum_probs=216.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T  128 (457)
                      .+.+.|+.+.+. ++++.+.+++.+.+.+...++.    ..+|.......++|+.+++++      ++++++|++|+|++
T Consensus        34 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~  109 (409)
T PRK07590         34 AKIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAET----FRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAK  109 (409)
T ss_pred             CceEEecCcCCCCCCCHHHHHHHHHHHhcccccCC----ccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHH
Confidence            345777776666 5678889999888764311100    111222234567778888775      67888999999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-----------EEEEeCCCCCCCCHHHHHHhcCCCc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-----------ITYLPVGADGIVNLDELRAAIRPDT  197 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-----------v~~v~~~~~~~~d~~~le~~i~~~t  197 (457)
                      +++.++ ..+.    .+||+|++..+.|+.+...++..   |.+           ++.++.+.++.+.++ ++   .+++
T Consensus       110 ~al~~l-~~~~----~~gd~V~v~~P~Y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~d-~~---~~~~  177 (409)
T PRK07590        110 CDTGNI-LDIF----GPDNTIAVTDPVYPVYVDTNVMA---GRTGEANEDGRYSGIVYLPCTAENNFVPE-LP---EEKV  177 (409)
T ss_pred             HHHHHH-HHhc----CCCCEEEEeCCCCcchHHHHHHc---CCcccccccccccceeEeecccccCCccc-Cc---ccCc
Confidence            999874 4454    79999999999999999888777   775           888887643322222 11   2578


Q ss_pred             eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----CCcccC---CCC-cccEEEeccccccCCCC--
Q 040741          198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----KIPVDV---EKW-NVSLMSLSGHKIYGPKG--  264 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~~~~~~---~~~-~~Di~~~s~~K~~g~~G--  264 (457)
                      ++|++++++||||.+.+   +++|+++|++||++|++|++|+--    ..+..+   ... +.-+++.|++|.+|.+|  
T Consensus       178 k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~pGlR  257 (409)
T PRK07590        178 DIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTAGFTGTR  257 (409)
T ss_pred             eEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCccccCCcCce
Confidence            99999999999999998   567888899999999999998732    111111   111 23467889999887555  


Q ss_pred             ceEEEEecCCCcccccc-----ccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          265 VGALYMRRRPRIRVEPL-----INGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       265 ~G~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                      +|+++++++.++++...     ...............+.....++..++.. ....+++.++.++++++++.+.|++ . 
T Consensus       258 iG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-  335 (409)
T PRK07590        258 CAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLES-A-  335 (409)
T ss_pred             eEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHh-c-
Confidence            99999987765522100     00000000000113344444444444431 2234677788888999999999998 4 


Q ss_pred             CeEEeCCCCCcccceEEEEEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          339 GVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                      ++.+..+..   ..++.+.++. .+..++...+   .||.+.+|..+..                 ...+++||++.  .
T Consensus       336 ~~~~~~~~g---~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~--~  393 (409)
T PRK07590        336 GFEVYGGVN---APYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGP-----------------SGEGYFRLSAF--G  393 (409)
T ss_pred             CCceecCCc---ceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCC-----------------CCCCEEEEEcc--C
Confidence            565543211   3345555543 3445666544   4899988864421                 12379999963  4


Q ss_pred             CHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQ  429 (457)
Q Consensus       415 t~edid~~~~~l~~~  429 (457)
                      ++++++.++++|.++
T Consensus       394 ~~~~l~~~l~rl~~~  408 (409)
T PRK07590        394 SRENVLEAMERIKKA  408 (409)
T ss_pred             CHHHHHHHHHHHHhh
Confidence            689999999998765

>PLN02231 alanine transaminase

Probab=99.93  E-value=7.8e-23  Score=208.92  Aligned_cols=327  Identities=15%  Similarity=0.139  Sum_probs=217.3

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhhh
Q 040741           67 TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        67 ~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~a~~~al~~~~~  140 (457)
                      ..+|.++++...+.+.+..+.   ...  .|.......++|+.+++++    |  +++++|++|+|+++|+.+++.+++.
T Consensus       139 ~~fp~~~i~~a~~~l~~~~~~---~~~--~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~  213 (534)
T PLN02231        139 GLFSADAIERAWQILDQIPGR---ATG--AYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIR  213 (534)
T ss_pred             ccCCHHHHHHHHHHHHhcCCc---ccc--CcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhcc
Confidence            346666776666665543221   011  1222345667777777766    4  4678899999999999999998872


Q ss_pred             hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC------CceEEEEeccccccccc
Q 040741          141 FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP------DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       141 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~  212 (457)
                         .+||.|++..+.|+.+...+...   |.+++.++.+.  ++.+|+++|++++++      +++++++++++||||.+
T Consensus       214 ---~~gd~Vli~~P~Y~~y~~~~~~~---g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~v  287 (534)
T PLN02231        214 ---SEKDGILCPIPQYPLYSASIALH---GGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQV  287 (534)
T ss_pred             ---CCCCEEEEeCCCChhHHHHHHHc---CCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcC
Confidence               47999999999999998887766   99999998874  357999999999865      68889999999999999


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc-cCCC---------Cc-ccEEEecccc-ccCCCC--ceEEEE-
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGKI----PV-DVEK---------WN-VSLMSLSGHK-IYGPKG--VGALYM-  270 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~-~~~~---------~~-~Di~~~s~~K-~~g~~G--~G~l~~-  270 (457)
                      ++   +++|+++|++||++||+|++|.--..    ++ .+..         .+ .-+.+.|++| ++|.+|  +||+.+ 
T Consensus       288 ls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~  367 (534)
T PLN02231        288 LAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVT  367 (534)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEe
Confidence            87   67889999999999999999873211    11 1110         01 1255669999 566444  899987 


Q ss_pred             --ecCCCccccccccCCccccccccCCCChhHHHHHHHHHH-------HH---HHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          271 --RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-------IA---KKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       271 --~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-------~~---~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                        +++.++.+.....       .. .+.+.....++..+++       ..   .++.+++.+.++++++.+.+.|.+ ++
T Consensus       368 ~~~~~l~~~l~k~~~-------~~-~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~-~~  438 (534)
T PLN02231        368 GFTSDVREQIYKVAS-------VN-LCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNS-LE  438 (534)
T ss_pred             cCCHHHHHHHHHHHh-------hh-cCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Confidence              3444444433221       11 1334444443333442       11   123445678899999999999998 78


Q ss_pred             CeEEeCCCCCcccceEE--EEEcc--c---------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          339 GVVVNGSMERRYIGNLN--LSFAY--V---------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~--~~~~~--~---------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      ++.+..+ +.  ..+++  +.++.  .         .+..+...|   .||++.+|..|..                ..+
T Consensus       439 gi~~~~p-~G--gfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~----------------~~g  499 (534)
T PLN02231        439 GVTCNKA-EG--AMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQ----------------VPG  499 (534)
T ss_pred             CceecCC-Ce--eeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCC----------------CCC
Confidence            8887653 22  11111  12121  0         011222323   5999999976532                112


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ..++|+++.  .++++++..+++|.++++++.
T Consensus       500 ~~~~Rit~~--~~~e~l~eal~RL~~~~~~~~  529 (534)
T PLN02231        500 TWHFRCTIL--PQEDKIPAIVSRLTEFHKSFM  529 (534)
T ss_pred             CCeEEEEeC--CCHHHHHHHHHHHHHHHHHHH
Confidence            357999985  578999999999999888763

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.92  E-value=2.4e-23  Score=207.94  Aligned_cols=308  Identities=14%  Similarity=0.148  Sum_probs=211.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~  178 (457)
                      .+....+++.++++.|.+.  .+++++|+.|+.+++.++.    ++|++||++...|.+....... +...|+++++++.
T Consensus        62 ~p~~~~le~~lA~l~g~~~--al~~~SG~~Ai~~al~all----~pGd~VIv~~~~y~~t~~~~~~~~~~~G~~v~~vd~  135 (427)
T PRK05994         62 NPTNAVLEERVAALEGGTA--ALAVASGHAAQFLVFHTLL----QPGDEFIAARKLYGGSINQFGHAFKSFGWQVRWADA  135 (427)
T ss_pred             CccHHHHHHHHHHHhCCCc--EEEEcCHHHHHHHHHHHHh----CCCCEEEEecCcchhHHHHHHHHHHhcCcEEEEECC
Confidence            4567889999999999875  8899999999999999987    8999999999999887665443 4566999999986


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                      +     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+... .....++|+++.|++|
T Consensus       136 ~-----d~~~l~~ai~~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~~-~pl~~gaDivv~S~tK  209 (427)
T PRK05994        136 D-----DPASFERAITPRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYLI-RPIEHGADIVVHSLTK  209 (427)
T ss_pred             C-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCccccccC-CccccCCcEEEEcCcc
Confidence            5     899999999999999999999999999999999999999999999999999876543 3335689999999999


Q ss_pred             ccCCCC--ceEEEEecCCCcc----ccccccC----C-c--c------------c----cccccCCCChhHHHHHHHHHH
Q 040741          259 IYGPKG--VGALYMRRRPRIR----VEPLING----G-G--Q------------E----RGIRSGTLPTPLIVGFGSACE  309 (457)
Q Consensus       259 ~~g~~G--~G~l~~~~~~~~~----~~~~~~~----~-~--~------------~----~~~~~~t~~~~~~~al~~al~  309 (457)
                      ++|+.|  +|.+++.......    ..+.+..    . +  .            .    ........++..++-+..   
T Consensus       210 ~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~---  286 (427)
T PRK05994        210 FLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFLILT---  286 (427)
T ss_pred             ccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHHHHc---
Confidence            776543  5555553221110    0000000    0 0  0            0    000011111111111111   


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC---C------------CcccceEEEEEccc--cchHHHhccc-
Q 040741          310 IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM---E------------RRYIGNLNLSFAYV--EGESLLMGLK-  371 (457)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~--~~~~~~~~l~-  371 (457)
                       -.+.++.++++..+++.++.+.|++ .|.+.-+-.|   .            ..+++++.|.+.+-  ....++..|+ 
T Consensus       287 -~l~tL~~r~~~~~~~a~~la~~L~~-~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~~sf~l~~~~~~~~~~~~~l~l  364 (427)
T PRK05994        287 -GIETLPLRMQRHSDNALAVAEWLKG-HPKVSWVNYAGLPDDPYHALAQKYSPKGAGAVFTFGLKGGYEAGVKLVSSLKL  364 (427)
T ss_pred             -CcccHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhcCCCceEEEEEEecCCHHHHHHHHHhCCc
Confidence             1124788889999999999999998 7876432111   1            23466777777531  1235555553 


Q ss_pred             -CeEecccCccC----CCCCChhH----HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          372 -EVAVSSGSACT----SASLEPSY----VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       372 -~i~~~~g~~~~----~~~~~~~~----~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                       .++++-|...+    +....+..    ..+..|+.+    +.|||+++.    ||.|.+++.|++++++
T Consensus       365 ~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~----~liRlsvGl----E~~~dli~dl~~Al~~  426 (427)
T PRK05994        365 FSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGP----DVVRLSIGI----EDVDDIIADLEQALAK  426 (427)
T ss_pred             ceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCC----CcEEEEecc----CCHHHHHHHHHHHHhh
Confidence             55555665433    22222211    223466654    799999997    7888889988888763

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=1.4e-23  Score=205.46  Aligned_cols=307  Identities=13%  Similarity=0.083  Sum_probs=214.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHH-HHHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSC-RHLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~G~~  172 (457)
                      .|+....+....+++.++.+-+.+.  .+++++|++|+..++.++.    ++||+||++.+.|+++...+ ..++..|++
T Consensus        57 ~YsR~gnPt~~~Le~~la~le~~~~--~v~~sSG~aAi~~~l~all----~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~  130 (395)
T PRK05967         57 TYGTRGTPTTDALCKAIDALEGSAG--TILVPSGLAAVTVPFLGFL----SPGDHALIVDSVYYPTRHFCDTMLKRLGVE  130 (395)
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCCC--EEEECcHHHHHHHHHHHhc----CCCCEEEEccCCcHHHHHHHHHHHHhcCeE
Confidence            3444455788889999999887543  6777779999999999998    89999999999999987655 345677999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +.+++.+     +.++++++++++|++|++++++||++.+.|+++|+++|+++|+++++|++++.+. .....++|+|++
T Consensus       131 v~~vd~~-----~~e~l~~al~~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~-~~~pl~~GaDiv  204 (395)
T PRK05967        131 VEYYDPE-----IGAGIAKLMRPNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPL-YFRPLDFGVDIS  204 (395)
T ss_pred             EEEeCCC-----CHHHHHHhcCcCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCce-ecChhHcCCCEE
Confidence            9998654     4688999999999999999999999999999999999999999999999998653 234455789999


Q ss_pred             EeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       253 ~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +.|.+|++++-|   .|+++.+++..+++.....       ....+.++..+..+...    .+.+.-++++..+++..+
T Consensus       205 v~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~-------~~G~~~~p~da~l~~rg----l~Tl~lR~~~~~~na~~l  273 (395)
T PRK05967        205 IHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG-------TLGLCAGPDDTYQILRG----LRTMGIRLEHHRKSALEI  273 (395)
T ss_pred             EEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHcC----cccHHHHHHHHHHHHHHH
Confidence            999999755433   5766665543333322111       11124444443322222    224677888889999999


Q ss_pred             HHHHhhcCCCeE-EeCCC--C-----------CcccceEEEEEccc------cchHHHhccc--CeEecccCccCCCC--
Q 040741          330 LNGIKEKLDGVV-VNGSM--E-----------RRYIGNLNLSFAYV------EGESLLMGLK--EVAVSSGSACTSAS--  385 (457)
Q Consensus       330 ~~~l~~~~~~~~-~~~~~--~-----------~~~~~~~~~~~~~~------~~~~~~~~l~--~i~~~~g~~~~~~~--  385 (457)
                      .+.|++ .|.+. |+-+.  .           ...++++.|.+++-      ....++..|+  .++++-|...+...  
T Consensus       274 A~~L~~-hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~slG~~~sLi~~~  352 (395)
T PRK05967        274 ARWLEG-RPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGYSWGGYESLALHV  352 (395)
T ss_pred             HHHHHh-CCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEccCCCCcceeeeeC
Confidence            999998 77762 32221  1           13467777887521      1235666664  45555565443221  


Q ss_pred             -CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          386 -LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       386 -~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                       +.+.. ....|+.    ++.|||+++.    ||.|.+++.|+++++.+
T Consensus       353 ~~~~~~-~~~~~~~----~~liRlSvGl----Ed~~dLi~Dl~~Al~~~  392 (395)
T PRK05967        353 KLGDRT-VAKAPYA----GPVIRLQIGL----EDVPDLKADLERGFAAA  392 (395)
T ss_pred             CCChhH-hhhccCC----CCeEEEEecc----CCHHHHHHHHHHHHHhh
Confidence             11111 1122333    3799999997    78888999999888754

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.92  E-value=1.1e-22  Score=204.81  Aligned_cols=299  Identities=17%  Similarity=0.220  Sum_probs=212.4

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEE
Q 040741          102 AVETARSQIADLI----G--ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY  175 (457)
Q Consensus       102 ~~~~~~~~la~~~----g--~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~  175 (457)
                      ...++++.+++++    |  +++++|++|+|+++|++++++.+.    ++||.|++.+++|.....+.+..   |++++.
T Consensus       133 G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~----~pGd~v~vE~PtY~~~~~~~~~~---g~~~~~  205 (459)
T COG1167         133 GLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLL----DPGDTVLVEDPTYPGALQALEAL---GARVIP  205 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhC----CCCCEEEEcCCCcHHHHHHHHHc---CCcEEe
Confidence            4445555555554    4  467789999999999999999999    89999999888888877776665   999999


Q ss_pred             EeCCCCCCCCHHHHHHhcCC-Cce-EEEEeccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCC----c---cc
Q 040741          176 LPVGADGIVNLDELRAAIRP-DTG-LISVMAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKI----P---VD  243 (457)
Q Consensus       176 v~~~~~~~~d~~~le~~i~~-~t~-li~i~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~----~---~~  243 (457)
                      ||++.+| +|+++|++++.. +++ +++++..+||||..++++   +|.++|++||++||+|+.++.-..    +   ..
T Consensus       206 vp~d~~G-~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~~l~~  284 (459)
T COG1167         206 VPVDEDG-IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPPPLKA  284 (459)
T ss_pred             cCCCCCC-CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCCChHh
Confidence            9999666 799999999976 344 556788999999999965   699999999999999999974221    1   12


Q ss_pred             CCCCcccEEEeccccccCCC-CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHH--HHHHhhHHHHH
Q 040741          244 VEKWNVSLMSLSGHKIYGPK-GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE--IAKKEMDYDHK  320 (457)
Q Consensus       244 ~~~~~~Di~~~s~~K~~g~~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~--~~~~~~~~~~~  320 (457)
                      .+..+.-++++||||...|. ++||+++.++.++++.......      .. .++.....++..-+.  .+...+.++++
T Consensus       285 ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~~~~~~~~k~~~------~~-~~s~~~Q~~la~~l~~G~~~~hl~~lR~  357 (459)
T COG1167         285 LDAPGRVIYLGSFSKTLAPGLRLGYVVAPPELIEKLLRLKQAA------DL-GPSSLSQAALAAFLLSGHYDRHLRRLRR  357 (459)
T ss_pred             hCCCCCEEEEeeehhhcccccceeeeeCCHHHHHHHHHHHHHh------cC-CCChHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            22335668999999965543 6999999987776665443221      11 233333233322222  23445889999


Q ss_pred             HHHHHHHHHHHHHhhcCC-CeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecc-cCccCCCCCChhHHHHHc
Q 040741          321 RITALHDRLLNGIKEKLD-GVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSS-GSACTSASLEPSYVLRAL  395 (457)
Q Consensus       321 ~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~-g~~~~~~~~~~~~~l~~~  395 (457)
                      .+++.++.+.+.|++..+ .+.+..+ ..  +..+.+.++. .+...+....  +|+.+.+ |..+...           
T Consensus       358 ~y~~rr~~l~~~L~~~~~~~~~~~~p-~g--G~flwl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~-----------  423 (459)
T COG1167         358 EYARRRDALLEALAEYLPELATWTRP-EG--GLFLWLELPEGIDARELLAAALEKGVVVTPLGSAFSAD-----------  423 (459)
T ss_pred             HHHHHHHHHHHHHHHhCCCCeeeecC-Cc--eEEEEEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCC-----------
Confidence            999999999999999445 4444443 21  2233334432 3444555544  6888888 7655431           


Q ss_pred             CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          396 GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       396 g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                         . ...+.+||+++... .+++++.++.|.+++++..
T Consensus       424 ---~-~~~~~~Rl~~s~~~-~e~i~~gi~~l~~~~~~~~  457 (459)
T COG1167         424 ---G-DPRNGLRLSFSSPS-EEEIEEGIKRLAALLREAA  457 (459)
T ss_pred             ---C-CCCCeEEEEcCCCC-HHHHHHHHHHHHHHHHHHh
Confidence               1 13469999999854 8999999999999988764

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.92  E-value=2.6e-23  Score=205.17  Aligned_cols=310  Identities=15%  Similarity=0.122  Sum_probs=204.8

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCChH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G---ASPKEIIFTSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~i~~t~g~T  128 (457)
                      +.+.|..+.+. +.++.+.+++.+.... .+++.      .    ....++++.+++++    |   ++++++++|+|++
T Consensus        28 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~~Y~~------~----~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~   96 (364)
T PRK07865         28 GIVDLSVGTPVDPVPPVIQEALAAAADA-PGYPT------T----AGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSK   96 (364)
T ss_pred             CEEEcCCCCCCCCCCHHHHHHHHHHHhh-CCCCC------c----cCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChH
Confidence            44666665543 4467778887665421 11111      1    12334555555555    4   5688999999999


Q ss_pred             HHHHHHHHHh-hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          129 ESNNVSIKGV-MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       129 ~a~~~al~~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      +++.+++..+ +    ++|+.|+++.+.|+.+..+++..   |+++..++       ++++++   ..++++|++++++|
T Consensus        97 ~~i~~~~~~l~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~-------~~~~l~---~~~~~~v~~~~p~N  159 (364)
T PRK07865         97 ELVAWLPTLLGL----GPGDVVVIPELAYPTYEVGARLA---GATVVRAD-------SLTELG---PQRPALIWLNSPSN  159 (364)
T ss_pred             HHHHHHHHHHcC----CCCCEEEECCCCcccHHHHHHhc---CCEEEecC-------ChhhCC---cccceEEEEcCCCC
Confidence            9999877776 5    79999999999999998887766   99888774       233332   25788999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---ccc-CC------CCcccEEEeccccccCCCC--ceEEEEec
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVD-VE------KWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~-~~------~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      |||.+.+   +++|.++|+++|+++++|++|+....   +.. ..      ..+..+++.|++|.+|.+|  +|+++.++
T Consensus       160 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~  239 (364)
T PRK07865        160 PTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDP  239 (364)
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCH
Confidence            9999988   56788889999999999999974211   111 00      1124588999999887555  89999887


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.+.++.......       ....+.....++..++.. .+.+++.++.++++++.+.+.|++ . ++.+..+..   +.
T Consensus       240 ~~~~~~~~~~~~~-------~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~  306 (364)
T PRK07865        240 ALVAELLEVRKHA-------GMMVPAPVQAAMVAALGD-DAHVREQRERYARRRAVLRPALEA-A-GFRVDHSEA---GL  306 (364)
T ss_pred             HHHHHHHHHHHhc-------CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCCc---cE
Confidence            7666554332111       113444444444444432 234667778888889999999988 4 665543321   22


Q ss_pred             eEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          353 NLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       353 ~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ++.+.+. .+...+...+  +||.+.+|..+..                 ...+++||+++.  +++++++++++|+
T Consensus       307 ~~~~~~~-~~~~~~~~~l~~~gv~v~pg~~f~~-----------------~~~~~iRi~~~~--~~~~~~~~~~~l~  363 (364)
T PRK07865        307 YLWATRG-EDCWDTVAWLAERGILVAPGDFYGP-----------------AGAQHVRVALTA--TDERIAAAVERLA  363 (364)
T ss_pred             EEEEeCC-CCHHHHHHHHHHCCEEEeCccccCc-----------------CCCCEEEEEecC--CHHHHHHHHHHhh
Confidence            2333332 3334555555  6999988764321                 113799999985  5899999998875

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.92  E-value=2.3e-23  Score=205.12  Aligned_cols=304  Identities=17%  Similarity=0.144  Sum_probs=209.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHH-HHHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSC-RHLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~G~~  172 (457)
                      .|+...++...++++.++++.|.+.  .+++++|+.++.+++ .+.    ++||+|+++.+.|.+..... +.+...|++
T Consensus        43 ~y~r~~~p~~~~Le~~lA~l~g~~~--~~~~~sG~aai~~~~-~~l----~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~~  115 (377)
T PRK07671         43 EYSRTGNPTRAALEELIAVLEGGHA--GFAFGSGMAAITAVM-MLF----SSGDHVILTDDVYGGTYRVMTKVLNRFGIE  115 (377)
T ss_pred             CcCCCCChHHHHHHHHHHHHhCCCc--eEEeCCHHHHHHHHH-HHh----CCCCEEEECCCccchHHHHHHHHHhcCCeE
Confidence            3444455788999999999999865  677788888877654 455    78999999999998665543 344566999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++..     |+++++++++++|++|++++++||+|.+.++++|.++|+++|+++++|++++.+.... ...+++|++
T Consensus       116 v~~v~~~-----d~~~l~~ai~~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~~-p~~~g~Div  189 (377)
T PRK07671        116 HTFVDTS-----NLEEVEEAIRPNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQS-PISLGADIV  189 (377)
T ss_pred             EEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccCC-hhhhCCeEE
Confidence            9998754     8999999999999999999999999999999999999999999999999997543322 224578999


Q ss_pred             EeccccccC-CCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYG-PKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~g-~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|++|++| +.+  .|+++++++ ..+++.......       .+..++.....+...    ...+..++++..+++.+
T Consensus       190 v~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~~-------g~~~~~~~a~l~~~~----l~tl~~R~~~~~~na~~  258 (377)
T PRK07671        190 LHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNST-------GGILGPQDSWLLLRG----LKTLGIRMEEHETNSRA  258 (377)
T ss_pred             EecCcccccCCccceeEEEEeCcHHHHHHHHHHHHhh-------cCCCCHHHHHHHHcC----cChHHHHHHHHHHHHHH
Confidence            999999765 432  466766543 333333222111       123333332222111    12366788888899999


Q ss_pred             HHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc-cchHHHhccc--CeEecccCccC----CCCCC
Q 040741          329 LLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSACT----SASLE  387 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~  387 (457)
                      +.+.|++ .|++.-+-.+.              ...++++.|.+.+. ....++..|+  .++++-|...+    +....
T Consensus       259 la~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~f~~~l~l~~~~~s~G~~~sl~~~~~~~~  337 (377)
T PRK07671        259 IAEFLNN-HPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDVGSEETANKVLERLQYFTLAESLGAVESLISIPSQMT  337 (377)
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEeCCHHHHHHHHHhCCcceEccCCCCCCeEeECCCccc
Confidence            9999998 77763332111              23467777777321 1234555553  55666666533    22221


Q ss_pred             hh----HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          388 PS----YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       388 ~~----~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.    -.....|+.+    +.|||+++.    ||.+.+++.|++++
T Consensus       338 ~~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al  376 (377)
T PRK07671        338 HASIPADRRKELGITD----GLIRISVGI----EDGEDLIEDLAQAL  376 (377)
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHh
Confidence            11    1234566665    899999997    78888888888876

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=99.92  E-value=2e-22  Score=201.30  Aligned_cols=327  Identities=16%  Similarity=0.159  Sum_probs=215.3

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T  128 (457)
                      .+.-|+|+.+.      ++.+|++.+++.+.+.... ...   ..+.   .+...++.+.++++++.+ +++++|++||+
T Consensus        41 dg~~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~~-~~~---~~~~---~~~~~~la~~l~~~~~~~~~~~v~~~~sgs  113 (398)
T PRK03244         41 DGKEYLDLLGGIAVNALGHAHPAVVEAVTRQLATLG-HVS---NLFA---TEPQIALAERLVELLGAPEGGRVFFCNSGA  113 (398)
T ss_pred             CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcc-Ccc---CccC---CHHHHHHHHHHHHhCCCCCCCEEEEeCchH
Confidence            34457887652      2347999999999887532 111   1111   134468999999999864 46899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHHhc---------CcEEEEEeCCCCCCCCHHHHHHhcCCCce
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQQE---------GFEITYLPVGADGIVNLDELRAAIRPDTG  198 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~~~---------G~~v~~v~~~~~~~~d~~~le~~i~~~t~  198 (457)
                      +|+..+++.+...  + ++.|+. ....|.....+.......         +.++..++.     .|+++++++++++++
T Consensus       114 ea~~~al~~~~~~--g-~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~  185 (398)
T PRK03244        114 EANEAAFKLARLT--G-RTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDDDTA  185 (398)
T ss_pred             HHHHHHHHHHHHH--C-CCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcCCeE
Confidence            9999999977641  2 244544 444555544443332100         112233332     389999999988899


Q ss_pred             EEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cc--cCCCCcccEEEeccccccC-CCCceEE
Q 040741          199 LISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PV--DVEKWNVSLMSLSGHKIYG-PKGVGAL  268 (457)
Q Consensus       199 li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~--~~~~~~~Di~~~s~~K~~g-~~G~G~l  268 (457)
                      +|+++.++|++|.+.|    +++|.++|++||+++|+|++++. |..  .+  ......+|++++  +|.+| +-++|++
T Consensus       186 aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~--sK~l~~G~~ig~~  263 (398)
T PRK03244        186 AVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTL--AKGLGGGLPIGAC  263 (398)
T ss_pred             EEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEE--chhhhCCcccEEE
Confidence            9999999999999988    88999999999999999999862 211  11  222334787655  59655 2348999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER  348 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  348 (457)
                      +++++..+.+.....+      ... ..++..+.+..++++.+.+  +...++.+++.+++++.|++ +. ..+.... .
T Consensus       264 ~~~~~~~~~~~~~~~~------~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~v-~  331 (398)
T PRK03244        264 LAFGPAADLLTPGLHG------STF-GGNPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGIEA-LG-HPLVDHV-R  331 (398)
T ss_pred             EEcHHHHhhccCCCCc------CCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHh-cC-CCceeeE-e
Confidence            9988765554432211      111 3455666666677776654  35667888888999999987 42 2111111 1


Q ss_pred             cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          349 RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      ..+.++.+.++......+...+  +|+.+.+..                       .+.|||+++..++++||++++++|
T Consensus       332 g~g~~~~i~~~~~~~~~~~~~l~~~Gv~~~~~~-----------------------~~~iR~~p~~~~t~~~i~~~~~~l  388 (398)
T PRK03244        332 GRGLLLGIVLTAPVAKAVEAAAREAGFLVNAVA-----------------------PDVIRLAPPLIITDAQVDAFVAAL  388 (398)
T ss_pred             eccEEEEEEEeccHHHHHHHHHHHCCeEEeecC-----------------------CCEEEEECCCcCCHHHHHHHHHHH
Confidence            1345555555432334555555  677775421                       168999999999999999999999


Q ss_pred             HHHHHHHH
Q 040741          427 VKQVEKLR  434 (457)
Q Consensus       427 ~~~~~~~~  434 (457)
                      ++++++++
T Consensus       389 ~~~l~~~~  396 (398)
T PRK03244        389 PAILDAAA  396 (398)
T ss_pred             HHHHHhcc
Confidence            99998765

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.92  E-value=1.8e-23  Score=208.35  Aligned_cols=316  Identities=14%  Similarity=0.146  Sum_probs=212.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~  172 (457)
                      .|+....+...++++.++++.|.+.  .+++++|++|+.+++.++.    ++|++|++..+.|.+....+.. +...|++
T Consensus        51 ~y~r~~~pt~~~Le~~lA~l~g~~~--~l~~ssG~~Ai~~al~al~----~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi~  124 (425)
T PRK06084         51 IYTRIMNPTNDVLEQRVAALEGGVG--ALAVASGMAAITYAIQTIA----EAGDNIVSVAKLYGGTYNLLAHTLPRIGIE  124 (425)
T ss_pred             cccCCCCchHHHHHHHHHHHhCCCc--eeEehhHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHhcccceeE
Confidence            3444445678899999999999754  7889999999999999988    8999999999988866655443 2334778


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +.+++..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+... .....++|++
T Consensus       125 v~~~d~~-----d~e~le~ai~~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~~-~p~~~gaDiv  198 (425)
T PRK06084        125 TRFAAHD-----DIAALEALIDERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVLC-RPFEHGADIV  198 (425)
T ss_pred             EEEECCC-----CHHHHHHHhccCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCCEE
Confidence            8777643     899999999999999999999999999999999999999999999999999976543 2235689999


Q ss_pred             EeccccccCCCC--ceEEEEecCCCc--ccccc---c-------cCCcccc----------------ccccCCCChhHHH
Q 040741          253 SLSGHKIYGPKG--VGALYMRRRPRI--RVEPL---I-------NGGGQER----------------GIRSGTLPTPLIV  302 (457)
Q Consensus       253 ~~s~~K~~g~~G--~G~l~~~~~~~~--~~~~~---~-------~~~~~~~----------------~~~~~t~~~~~~~  302 (457)
                      +.|++|++|..|  +|.+++..+...  .....   +       .+....+                .......++..+.
T Consensus       199 v~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~  278 (425)
T PRK06084        199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAF  278 (425)
T ss_pred             EECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence            999999766433  344444322111  11000   0       0000000                0000112211111


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CC--CC-----------Cc-ccceEEEEEccc--cchH
Q 040741          303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN-GS--ME-----------RR-YIGNLNLSFAYV--EGES  365 (457)
Q Consensus       303 al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~--~~-----------~~-~~~~~~~~~~~~--~~~~  365 (457)
                      .+..    -.+.+..++++..+++.++.+.|++ .|.+.-+ -+  +.           .. +++++.|.+.+.  ....
T Consensus       279 l~lr----gl~tl~~R~~~~~~na~~la~~L~~-~p~v~~V~yP~l~~~p~~~~~~~~~~g~~gg~~s~~~~~~~~~~~~  353 (425)
T PRK06084        279 LILQ----GLETLALRMERHTENALKVARYLQQ-HPQVAWVKYAGLPDHPEHELARRYMGGKPASILSFGIKGGQAAGAR  353 (425)
T ss_pred             HHHc----CcCcHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCcccHHHHHHhCCCCcceEEEEEecCCHHHHHH
Confidence            1111    1124788889999999999999999 8876432 21  11           12 466777777532  1235


Q ss_pred             HHhccc--CeEecccCccC----CCCCChh----HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGLK--EVAVSSGSACT----SASLEPS----YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l~--~i~~~~g~~~~----~~~~~~~----~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++..|+  .++++-|...+    +..+.+.    -..+..|+++    +.|||+++.    ||.|.+++.|+++++..+
T Consensus       354 f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~----~liR~svGl----Ed~~dLi~dl~~Al~~~~  424 (425)
T PRK06084        354 FIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSR----DMVRLSIGI----EHIDDIIADLAQALDASK  424 (425)
T ss_pred             HHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHHhhh
Confidence            666664  44555565433    3222221    1234567665    899999996    889999999999987654

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.92  E-value=3.5e-23  Score=206.77  Aligned_cols=335  Identities=18%  Similarity=0.132  Sum_probs=215.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh---CCCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI---GASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~---g~~~~~i~~t~g~T~a~  131 (457)
                      .+.+.|+.+.+. ++++.+.+++.+.+.+......    ..+|.......++++.+++++   +++++++++|+|+++++
T Consensus        33 ~~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~Y~p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al  108 (402)
T TIGR03542        33 ADIIRLGIGDTTQPLPASVIEAFHNAVDELASEET----FRGYGPEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDV  108 (402)
T ss_pred             CCeEEcCCCCCCCCCCHHHHHHHHHHHhccccccc----ccCCCCCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHH
Confidence            456778777665 5788899999988764321100    011222245677888888876   67888999999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCc-----------EEEEEeCCCCCCCCHHHHHHhcCCCceEE
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF-----------EITYLPVGADGIVNLDELRAAIRPDTGLI  200 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~-----------~v~~v~~~~~~~~d~~~le~~i~~~t~li  200 (457)
                      .++ ..+.    .+|+.|++..+.|..+...++..   |+           +++.++.+..+.++++ +++  ..++++|
T Consensus       109 ~~l-~~l~----~~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~--~~~~~~i  177 (402)
T TIGR03542       109 FRL-QSLF----GSDNTVAVQDPVYPAYVDSNVMA---GRAGVLDDDGRYSKITYLPCTKENNFIPD-LPE--EPKIDII  177 (402)
T ss_pred             HHH-HHhc----CCCCEEEEeCCCCcchHHHHHHc---CCccccccccccceEEEeecchhhCCCCC-ccc--cCCceEE
Confidence            875 4555    68999999999999998877666   88           8888887633222222 111  2578899


Q ss_pred             EEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccC---CC-CcccEEEeccccccCCCC--ceE
Q 040741          201 SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDV---EK-WNVSLMSLSGHKIYGPKG--VGA  267 (457)
Q Consensus       201 ~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~---~~-~~~Di~~~s~~K~~g~~G--~G~  267 (457)
                      ++++++||||.+.+   +++|+++|++||++||+|+++.-..    .+..+   .. .+..+++.|++|.+|.+|  +|+
T Consensus       178 ~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGlRiG~  257 (402)
T TIGR03542       178 YLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGVRLGW  257 (402)
T ss_pred             EEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCccccCCCCcceEE
Confidence            99999999999999   7789999999999999999997321    11111   11 123467889999888666  899


Q ss_pred             EEEecCCCcccccc-ccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          268 LYMRRRPRIRVEPL-INGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       268 l~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      ++++++.+...... ...+.........+.+.....++..++.. ....+.+..+.++++++++.+.|++ . ++.+..+
T Consensus       258 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~  335 (402)
T TIGR03542       258 TVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEA-A-GFKVYGG  335 (402)
T ss_pred             EEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHh-c-CceecCC
Confidence            99987654111000 00000000001112333333333333321 1112445567778888889999988 4 5655432


Q ss_pred             CCCcccceEEEEEcc-ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          346 MERRYIGNLNLSFAY-VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       346 ~~~~~~~~~~~~~~~-~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      .   ...++.+.++. .+..++...+   .||.+.+|..+..                 ...+++||++..  ++++++.
T Consensus       336 ~---~~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~l~~  393 (402)
T TIGR03542       336 E---HAPYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGP-----------------SGEGFVRFSAFG--KRENIVE  393 (402)
T ss_pred             C---ceeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEecC--CHHHHHH
Confidence            1   13455555543 3455666654   4899998864321                 113799999754  6899999


Q ss_pred             HHHHHHHH
Q 040741          422 AIELTVKQ  429 (457)
Q Consensus       422 ~~~~l~~~  429 (457)
                      ++++|+++
T Consensus       394 ~l~~l~~~  401 (402)
T TIGR03542       394 ACERIKEA  401 (402)
T ss_pred             HHHHHHhh
Confidence            99988765

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.92  E-value=2.6e-23  Score=202.17  Aligned_cols=270  Identities=18%  Similarity=0.178  Sum_probs=193.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG  182 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~  182 (457)
                      ..++++++++++|.+++++++|+|+++++.++... .    .+| .|++..+.|..+...++.   .|.+++.++     
T Consensus        49 ~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~-l----~~g-~vl~~~p~y~~~~~~~~~---~g~~~~~~~-----  114 (330)
T TIGR01140        49 YDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRL-L----APG-RVLVLAPTYSEYARAWRA---AGHEVVELP-----  114 (330)
T ss_pred             HHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHH-h----CCC-eEEEeCCCcHHHHHHHHH---cCCEEEEeC-----
Confidence            48899999999999888999999999999886554 4    466 688888888887766554   499998887     


Q ss_pred             CCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcccC----CCCcccEEEec
Q 040741          183 IVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPVDV----EKWNVSLMSLS  255 (457)
Q Consensus       183 ~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~~----~~~~~Di~~~s  255 (457)
                        |+++++++++ +++++++++++||+|.+.+   +++|+++|+++|+++++|+++.......++    ...+.++++.|
T Consensus       115 --d~~~l~~~~~-~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~i~~~S  191 (330)
T TIGR01140       115 --DLDRLPAALE-ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDASLAPQAARFPGLVVLRS  191 (330)
T ss_pred             --CHHHHHhhcc-cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccchhhHhccCCCEEEEEe
Confidence              7899999984 6778999999999999999   667888899999999999999633222111    12245789999


Q ss_pred             cccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       256 ~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      ++|.+|.+|  +|+++++++.+.++......         .+.+.....++...++. .+..+...++++++.+.+.+.|
T Consensus       192 ~SK~~g~~G~R~G~i~~~~~~~~~l~~~~~~---------~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L  261 (330)
T TIGR01140       192 LTKFFGLAGLRLGFVVAHPALLARLREALGP---------WTVNGPARAAGRAALAD-TAWQAATRARLAAERARLAALL  261 (330)
T ss_pred             cchhhcCchhhhhheeCCHHHHHHHHhcCCC---------CCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHH
Confidence            999888666  79999988766665544321         13344444434333331 1124677888899999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                      ++ ++.+++.+.    ...++.+.++  +..++.+.|  +||.+.+|..+.                 ....++|||+++
T Consensus       262 ~~-~~~~~~~~~----~~~f~~~~~~--~~~~l~~~l~~~gi~v~pg~~f~-----------------~~~~~~iRi~~~  317 (330)
T TIGR01140       262 AR-LGGLEVVGG----TALFLLVRTP--DAAALHEALARRGILIRDFDNFP-----------------GLDPRYLRFALP  317 (330)
T ss_pred             Hh-CCCceECCC----CCeEEEEEcC--CHHHHHHHHHHCCEEEEECCCCC-----------------CCCCCEEEEEec
Confidence            99 766665432    1333333333  455666666  699999987541                 112369999997


Q ss_pred             CCCCHHHHHHHHHHH
Q 040741          412 RFTTEAEVDRAIELT  426 (457)
Q Consensus       412 ~~~t~edid~~~~~l  426 (457)
                      .  ..++ ++++++|
T Consensus       318 ~--~~~~-~~~~~~l  329 (330)
T TIGR01140       318 T--DEEN-DRLEEAL  329 (330)
T ss_pred             C--HHHH-HHHHHhh
Confidence            5  3355 7777765

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=4.9e-23  Score=202.80  Aligned_cols=285  Identities=17%  Similarity=0.181  Sum_probs=200.6

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--  179 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--  179 (457)
                      ..++++.+++++|++++++++|+|+++++.+++.++.    .+| +.|+++.+.|..+...++..   |.+++.++.+  
T Consensus        61 ~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~----~~g~~~vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~  133 (364)
T PRK04781         61 PPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC----VPGRDAVLVTPPVFGMYAVCARLQ---NAPLVEVPLVDG  133 (364)
T ss_pred             HHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc----CCCCCeEEEcCCChHHHHHHHHHc---CCEEEEEecCCC
Confidence            4689999999999999999999999999999999887    777 78999988877665544444   9999999974  


Q ss_pred             CCC-CCCHHHHHHh-cCCCceEEEEeccccccccccChHHHHHHHHh--cCCcEEEehhhhcCCCc---cc-CCCCcccE
Q 040741          180 ADG-IVNLDELRAA-IRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQALGKIP---VD-VEKWNVSL  251 (457)
Q Consensus       180 ~~~-~~d~~~le~~-i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~---~~-~~~~~~Di  251 (457)
                      .++ .+|+++++++ .++++++|++++++||||.+.+.+++.++++.  ++++||+|+++.-....   .. ....+.-+
T Consensus       134 ~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~~~~~~~~~~~~~~~vi  213 (364)
T PRK04781        134 ADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFSDVPSAVGLLARYDNLA  213 (364)
T ss_pred             ccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhcCCcchHHHHhhCCCEE
Confidence            233 5788887654 46789999999999999999998888877764  47999999998732211   11 11223347


Q ss_pred             EEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDR  328 (457)
Q Consensus       252 ~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~  328 (457)
                      ++.|++|.||.+|  +|+++++++.++++......+         ..+.....++..+++.. .+...+..+++++.++.
T Consensus       214 ~~~SfSK~~gl~GlRvGy~v~~~~l~~~l~~~~~~~---------~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~  284 (364)
T PRK04781        214 VLRTLSKAHALAAARIGSLIANAELIAVLRRCQAPY---------PVPTPCAALAEQALSAPALAVTARRVAEVRAERER  284 (364)
T ss_pred             EEecChhhcccccceeeeeeCCHHHHHHHHhccCCC---------CCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            8899999888555  999999887766655443211         23333333333344322 12344555677888899


Q ss_pred             HHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          329 LLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      +.+.|++ ++++....+..   +.++.+.++  +...+...+  +||.+.++..+.                  ...+++
T Consensus       285 l~~~L~~-~~~~~~~~p~~---g~f~~~~~~--~~~~~~~~l~~~gI~v~~~~~~~------------------~~~~~~  340 (364)
T PRK04781        285 LHAALAQ-LPGVRRVYPSQ---GNFLLVRFD--DAEAAFQALLAAGVVVRDQRAAP------------------RLSDAL  340 (364)
T ss_pred             HHHHHHh-CCCCCeECCCC---CcEEEEEcC--CHHHHHHHHHHCCeEEeeCCCCC------------------CCCCeE
Confidence            9999988 77764222221   444445544  345555555  799998875321                  113799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ||+++.   .++.++++++|++..
T Consensus       341 Ris~~~---~~~~~~l~~al~~~~  361 (364)
T PRK04781        341 RITLGT---PEQNDRVLAALQRTQ  361 (364)
T ss_pred             EEeCCC---HHHHHHHHHHHHHHH
Confidence            999984   899999999988643

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.92  E-value=5.8e-23  Score=189.36  Aligned_cols=342  Identities=16%  Similarity=0.146  Sum_probs=235.6

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      .+||-.   ++..-+...++...+--+..||..      .+...+....+|++++.+-|--.  .+.++||..|+..++.
T Consensus        27 ~PIyqt---Tsy~F~d~~haa~lF~l~~~G~iY------sRi~NPT~~vlE~RiAaLEGG~a--a~a~aSG~AA~~~ai~   95 (426)
T COG2873          27 VPIYQT---TSYVFDDTDHAAALFGLKEPGNIY------TRIMNPTTDVLEERIAALEGGVA--ALAVASGQAAITYAIL   95 (426)
T ss_pred             cceeee---eeeecCCHHHHHHHhCCCcCCcee------eeccCchHHHHHHHHHHhhcchh--hhhhccchHHHHHHHH
Confidence            345543   333333344555555545555533      34455788899999999988644  7888999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      .++    ++||+|+.+..-|.+......+. ++.|+++++++.+     |+++++++|+++|++|+++...||.+.+.++
T Consensus        96 ~la----~aGD~iVss~~LYGGT~~lf~~tl~~~Gi~v~fvd~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Di  166 (426)
T COG2873          96 NLA----GAGDNIVSSSKLYGGTYNLFSHTLKRLGIEVRFVDPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDI  166 (426)
T ss_pred             Hhc----cCCCeeEeeccccCchHHHHHHHHHhcCcEEEEeCCC-----CHHHHHHHhCcccceEEEEeccCCCccccCH
Confidence            999    89999999999999999888765 7889999999877     8999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccc-c----------ccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRV-E----------PLI  282 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~-~----------~~~  282 (457)
                      +.|+++||++|+++++|.+.+.+.+ +..-+.++|+++-|.+|+.|.-|  +|-+++.....+.- .          +.+
T Consensus       167 e~ia~iAh~~gvpliVDNT~atpyl-~rP~~hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~~~rfP~~~~p~p~Y  245 (426)
T COG2873         167 EAIAEIAHRHGVPLIVDNTFATPYL-CRPIEHGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTANGRFPEFTTPDPSY  245 (426)
T ss_pred             HHHHHHHHHcCCcEEEecCCCccee-cchhhcCCCEEEEeecccccCCccccceEEEeCCccccccCCCCcccCCCCccc
Confidence            9999999999999999999887743 34445689999999999776544  66666665444332 1          111


Q ss_pred             cCCcccccc--------------c--cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          283 NGGGQERGI--------------R--SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       283 ~~~~~~~~~--------------~--~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +|-.+...+              +  ..+.++.....+..    ..+.+.=++++.-+++.++.+.|++ .|.+..+.-+
T Consensus       246 hGl~~~~~~g~~af~~~~r~~~lRDlGa~lsPfnAfl~lq----GlETL~LRmerH~~NA~~vA~~L~~-HpkV~~V~Yp  320 (426)
T COG2873         246 HGLVYTETFGNAAFIIKARVQLLRDLGATLSPFNAFLLLQ----GLETLSLRMERHCENALKVAEFLEN-HPKVAWVNYP  320 (426)
T ss_pred             cceehhhhcccHHHHHHHHHHHHHhcccccCcHHHHHHHh----chhhhHHHHHHHHHhHHHHHHHHhc-CCCeeeeecC
Confidence            111000000              0  01111111111111    1123677788899999999999999 8887665432


Q ss_pred             C---------------CcccceEEEEEccc--cchHHHhc------ccCeEecccCccCCCCCChhH----HHHHcCCCc
Q 040741          347 E---------------RRYIGNLNLSFAYV--EGESLLMG------LKEVAVSSGSACTSASLEPSY----VLRALGVDE  399 (457)
Q Consensus       347 ~---------------~~~~~~~~~~~~~~--~~~~~~~~------l~~i~~~~g~~~~~~~~~~~~----~l~~~g~~~  399 (457)
                      .               ...+.++.|.+++-  .+..++..      +.+|.=.......|++..++.    ...+.|+.+
T Consensus       321 gL~~~~~h~la~kyl~~g~g~vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~~aGv~~  400 (426)
T COG2873         321 GLASHPYHALAKKYLPKGAGAVLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPASTTHRQLSEEEQAAAGVTP  400 (426)
T ss_pred             CCCCCcchhHHHhhccCCCceEEEEEecChHHHHHHHHHHHHHHHhhccccccceeEecCcccchhcCCHHHHHhcCCCC
Confidence            1               12356666666542  11333333      345444333444454443322    355677776


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                          +.||+|++.    ||++.++..|+++++.
T Consensus       401 ----~~IRlSVGI----Ed~~DiiaDl~qAl~~  425 (426)
T COG2873         401 ----DLIRLSVGI----EDIDDIIADLEQALEA  425 (426)
T ss_pred             ----CcEEEEecc----CCHHHHHHHHHHHHhc
Confidence                899999996    8999999999988764

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.92  E-value=2.2e-23  Score=202.64  Aligned_cols=303  Identities=15%  Similarity=0.135  Sum_probs=206.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      -||+.....    ++.++..+.+..+.|            ..+.+.++++.+|+++|.+++++++++||++|+..++.++
T Consensus        28 ~ylgl~~~~----~~~~~~~~~~~~~~g------------~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al   91 (346)
T TIGR03576        28 DLTGLAGGF----KIDEEDLELLETYVG------------PAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILAL   91 (346)
T ss_pred             ccccCCCCh----hHHHHHHHHHHHhcC------------CHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHh
Confidence            477665544    455555555543311            1278999999999999998888999999999999999999


Q ss_pred             hhhhcCCCCEEEEc---CCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc---
Q 040741          139 MHFYKDKKRHVITT---QTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI---  212 (457)
Q Consensus       139 ~~~~~~~g~~vi~~---~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~---  212 (457)
                      .    ++|++|+++   .+.|+++...++..   |+++...       .|+++++.  .+++++|+++. .+++|.+   
T Consensus        92 ~----~~gd~Vli~~~d~p~~~s~~~~~~l~---ga~~~~~-------~~l~~l~~--~~~~~lIiitg-~s~~G~v~~~  154 (346)
T TIGR03576        92 E----PPGRKVVHYLPEKPAHPSIPRSCKLA---GAEYFES-------DELSELKK--IDGTSLVVITG-STMDLKVVSE  154 (346)
T ss_pred             C----CCCCEEEECCCCCCCchhHHHHHHHc---CCEEecc-------CCHHHHhh--CcCceEEEEEC-CCCCCcccCH
Confidence            8    899999864   56899988888776   8775332       25666543  35678888865 5788988   


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcc-c---CCCCcccEEEecccccc-CCCCceEEEEecCCCccccccccCCcc
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPV-D---VEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQ  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-~---~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~  287 (457)
                      .++++|+++|+++|+++++|+||+.+.... +   ....+.|+++.|++|.+ |+. +|+++++++.++.+......+. 
T Consensus       155 ~~L~~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~li~~l~~~~~~~~-  232 (346)
T TIGR03576       155 EDLKRVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKELVDKIKSVGEQFG-  232 (346)
T ss_pred             HHHHHHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHHHHHHHHhhcCcc-
Confidence            569999999999999999999999764321 1   11235689999999955 777 5999999877766655443221 


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH-
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL-  366 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  366 (457)
                           . +.+++.+.++.++++...  .+...+.++++.+.+.+.+.+ +   .+..++    .+++.+.++..+..++ 
T Consensus       233 -----~-s~~~~~~~aa~~aL~~~~--~~~~~~~l~~r~~~~~~~l~~-~---~~~~~~----~~f~~~~~~~~~~~~~~  296 (346)
T TIGR03576       233 -----L-EAQAPLLAAVVRALEEFE--LSRIRDAFKRKEEVYLRLFDK-L---NVERTP----TGFVIKGVEEEKLIEIG  296 (346)
T ss_pred             -----c-CccHHHHHHHHHHHhhcc--HHHHHHHHHHHHHHHHHHHHh-C---CCCcCC----CeEEEEeCCCCCHHHHH
Confidence                 1 345666666677776532  245566777777777777765 3   222221    2344455443222233 


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC-CHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIELTVKQV  430 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~-t~edid~~~~~l~~~~  430 (457)
                      ...|  +||.+.++..+.                  ...+++||+++... ++.+.++++++|++.+
T Consensus       297 ~~ll~~~gV~v~~~~~f~------------------~~~~~vRis~~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       297 LDLLRNYGIITITAVGMP------------------GASKTLRFDLAAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             HHHHHhCCEEEeCCcccC------------------CCCCeEEEEEecChHHhcCHHHHHHHHHhcc
Confidence            3333  689998865321                  11379999998522 2227999999998764

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.92  E-value=3.7e-22  Score=213.77  Aligned_cols=350  Identities=13%  Similarity=0.171  Sum_probs=230.0

Q ss_pred             ccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCcc-chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC-hH
Q 040741           51 GVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTH-LFGWESEVAVETARSQIADLIGASPKEIIFTSG-AT  128 (457)
Q Consensus        51 ~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g-~T  128 (457)
                      +......+|.|+. .+....+.+...+...-.  +.+-+.... ....+..+...++++++++++|.+.  +.+..+ |+
T Consensus       494 n~~~~~~~i~lGs-ct~~~~p~~~~~~~~~~~--f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d~--~sl~~~~ga  568 (954)
T PRK05367        494 DLALDRSMIPLGS-CTMKLNAAAEMIPITWPE--FANLHPFAPAEQAAGYRELIDQLEAWLAEITGYDA--VSLQPNAGA  568 (954)
T ss_pred             CcCcccceeeCCc-CCCcCCHHHHHHHHhCcc--ccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCCC--EEECccHHH
Confidence            3333566677777 555667666666554421  222121111 2223455889999999999999863  666665 55


Q ss_pred             HHHHHHHHHhhhhhcCCC----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEE
Q 040741          129 ESNNVSIKGVMHFYKDKK----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---DTGLIS  201 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~  201 (457)
                      .|+..++.++..++..+|    +.|+++...|+++..++..+   |++++.++++.+|.+|+++|++++++   ++..|+
T Consensus       569 ~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~---G~~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~  645 (954)
T PRK05367        569 QGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA---GMKVVVVACDENGNIDLDDLRAKAEEHADNLAAIM  645 (954)
T ss_pred             HHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC---CCEEEEECCCCCCCcCHHHHHHHHhccCCCeEEEE
Confidence            566566655554433444    46999999999998877655   99999999998899999999999976   356777


Q ss_pred             Eeccccccccc-cChHHHHHHHHhcCCcEEEehhhhcCCCccc-CCCCcccEEEecccccc------CCCCceEEEEecC
Q 040741          202 VMAVNNEIGVI-QPMEEIGQICKEFKIPFHTDAAQALGKIPVD-VEKWNVSLMSLSGHKIY------GPKGVGALYMRRR  273 (457)
Q Consensus       202 i~~~~~~~G~~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~~~~~~Di~~~s~~K~~------g~~G~G~l~~~~~  273 (457)
                      +..+++. |.+ .|+++|+++||++|+++++|+|+..+...+. ...+++|++++++||+|      |++|+|++++++.
T Consensus       646 it~pst~-G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~  724 (954)
T PRK05367        646 ITYPSTH-GVFEETIREICEIVHEHGGQVYLDGANMNAQVGLARPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAH  724 (954)
T ss_pred             EEcCCCC-eeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCChhhcCCCEEEecCcccCCCCcCCCCCceEEEeeccc
Confidence            7777664 554 7899999999999999999999986644443 34678999999999963      4666889999853


Q ss_pred             CCccccccccCCccccccc---cCCCChh---HHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Q 040741          274 PRIRVEPLINGGGQERGIR---SGTLPTP---LIVGFGSACEIA----KKEMDYDHKRITALHDRLLNGIKEKLDGVVVN  343 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~---~~t~~~~---~~~al~~al~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  343 (457)
                          +.+.+.|+.......   .|+....   ....+..+..++    .+++.+..++...+++|+.+.|.+ ...+...
T Consensus       725 ----l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~-~~~~~~~  799 (954)
T PRK05367        725 ----LAPFLPGHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKD-HYPVLYT  799 (954)
T ss_pred             ----ccccCCCCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-hcCcccc
Confidence                344444432111000   1222211   112222233332    235777777777999999999988 4333333


Q ss_pred             CCCCCcccceEEEEEc------cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          344 GSMERRYIGNLNLSFA------YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~------~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      ++. .....-..+.+.      +++..++...|  .|+....-+               +.     ..+.++|++...++
T Consensus       800 ~~~-~~~~~e~i~~~~~~~~~~g~~~~di~krL~d~G~~~~t~~---------------~p-----v~~~l~i~ptE~~s  858 (954)
T PRK05367        800 GAN-GRVAHECILDLRPLKESTGITVDDIAKRLIDYGFHAPTMS---------------FP-----VAGTLMVEPTESES  858 (954)
T ss_pred             CCC-CCcccceEEEeecccccCCCCHHHHHHHHHHCCCeEeecC---------------Cc-----cCCEEEEEeeecCC
Confidence            322 122222334442      23446777777  455443211               00     13789999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHh
Q 040741          416 EAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~~  435 (457)
                      ++|+|+++++|+...+++.+
T Consensus       859 ~~elDr~~~al~~i~~e~~~  878 (954)
T PRK05367        859 KAELDRFCDAMIAIRAEIDE  878 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988765

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.92  E-value=7.9e-23  Score=204.16  Aligned_cols=311  Identities=14%  Similarity=0.148  Sum_probs=208.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++...+...++++.++++.|.+.  +++++||++|+..++.++.    ++|++|+++.+.|++...... .+...|+++
T Consensus        51 ysr~~~p~~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~~l~----~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v  124 (418)
T TIGR01326        51 YSRLMNPTTDVLEQRIAALEGGVA--ALAVASGQAAITYAILNLA----QAGDNIVSSSYLYGGTYNLFKHTLKRLGIEV  124 (418)
T ss_pred             eECCCChhHHHHHHHHHHHhCCCe--EEEEccHHHHHHHHHHHHh----CCCCEEEEECCCcHHHHHHHHHHHHHcCcEE
Confidence            344445678899999999999754  8999999999999999888    899999999998877655543 345669999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ++++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++++|++++.+.. ......++|+++
T Consensus       125 ~~v~~~-----d~~~l~~~l~~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-~~~l~~g~Divv  198 (418)
T TIGR01326       125 RFVDPD-----DPEEFEKAIDENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-CRPIDHGADIVV  198 (418)
T ss_pred             EEECCC-----CHHHHHHhcCcCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-CCchhcCCeEEE
Confidence            999854     89999999999999999999999999999999999999999999999999986632 222345789999


Q ss_pred             eccccccCCCC--ceEEEEecCCCcccccccc--C---Cccc-----------------c----ccccCCCChhHHHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPRIRVEPLIN--G---GGQE-----------------R----GIRSGTLPTPLIVGFG  305 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~--~---~~~~-----------------~----~~~~~t~~~~~~~al~  305 (457)
                      .|++|++|+.|  +|+++++++..........  +   ..+.                 +    .......++....-+ 
T Consensus       199 ~S~sK~l~g~G~~lGg~v~~~~~~~~~~~~~~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~G~~~~p~~a~~~-  277 (418)
T TIGR01326       199 HSATKYIGGHGTAIGGVIVDGGKFDWANGRFPLFTTPDPSYHGLVFTETFGNPAFIVKARVQLLRDLGAALSPFNAFLL-  277 (418)
T ss_pred             ECccccccCCccceEEEEEecccccccccccccccCCCCccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHH-
Confidence            99999877655  7887776532211100000  0   0000                 0    000001111111100 


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC---C------------CcccceEEEEEccc-c-chHHHh
Q 040741          306 SACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM---E------------RRYIGNLNLSFAYV-E-GESLLM  368 (457)
Q Consensus       306 ~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~-~-~~~~~~  368 (457)
                        +. -...+..++++..+++..+.+.|.+ .|++..+--|   .            ...++++.|.+++- + ...++.
T Consensus       278 --~~-~l~tl~~R~~~~~~~a~~la~~L~~-~~~V~~V~yP~l~~~~~~~~~~~~~~~g~g~~~s~~l~~~~~~~~~f~~  353 (418)
T TIGR01326       278 --LQ-GLETLSLRMERHVENALKVAEFLEA-HPKVAWVNYPGLASHPHHALAKKYLPKGFGAVLSFEIKGGREAGKKFID  353 (418)
T ss_pred             --HC-CcccHHHHHHHHHHHHHHHHHHHHh-CCCccEEECCCCCCCccHHHHHHhccCCCcceEEEEecCCHHHHHHHHH
Confidence              00 0113555667777788889999988 7776433111   1            23567777777532 1 245666


Q ss_pred             ccc--CeEecccCccC----CCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          369 GLK--EVAVSSGSACT----SASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       369 ~l~--~i~~~~g~~~~----~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .|+  .++++-|...+    +..+.+    .-.....|+++    +.|||+++.    ||++.+++.|++++
T Consensus       354 ~l~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~Al  417 (418)
T TIGR01326       354 ALKLASHLANVGDAKSLVIHPASTTHQQLSEEEQLKAGVTP----GLIRLSVGI----ENIDDIIADLEQAL  417 (418)
T ss_pred             hCCcceeccccCCCCceeeCCCCCCcccCCHHHHHhcCCCC----CeEEEEecC----CCHHHHHHHHHHhh
Confidence            664  44444454322    222211    11234566665    899999997    78888888888876

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.92  E-value=4.5e-23  Score=204.05  Aligned_cols=309  Identities=14%  Similarity=0.124  Sum_probs=212.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~  178 (457)
                      .+.+..+|+.++++.|.+.  ++.++||+.|+.+++.+++    ++||+||++.+.|.+....+.. +...|+++++++.
T Consensus        60 nPtv~~lE~~la~leg~~~--av~~~SG~aAi~~al~all----~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~  133 (432)
T PRK06702         60 NPTLAAFEQKLAELEGGVG--AVATASGQAAIMLAVLNIC----SSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNP  133 (432)
T ss_pred             CcHHHHHHHHHHHHhCCCc--EEEECCHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECC
Confidence            3678999999999999865  8999999999999999987    8999999999999988877554 3667999999965


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                      .    +|+++++++|+++|++|++++++||++.+.++++|+++|+++|+++++|++.+.+.. ..+.+.++|+++.|.+|
T Consensus       134 ~----~d~~~l~~~I~~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-~~pl~~GADIvv~S~TK  208 (432)
T PRK06702        134 N----LTADEIVALANDKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-CQAFEHGANIIVHSTTK  208 (432)
T ss_pred             C----CCHHHHHHhCCcCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-CChhhcCCCEEEEcccc
Confidence            3    689999999999999999999999999999999999999999999999999864422 22335689999999999


Q ss_pred             ccCC-C-C-ceEEEEecCC----------Ccccccccc-----CCc----c--cc----ccccCCCChhHHHHHHHHHHH
Q 040741          259 IYGP-K-G-VGALYMRRRP----------RIRVEPLIN-----GGG----Q--ER----GIRSGTLPTPLIVGFGSACEI  310 (457)
Q Consensus       259 ~~g~-~-G-~G~l~~~~~~----------~~~~~~~~~-----~~~----~--~~----~~~~~t~~~~~~~al~~al~~  310 (457)
                      +.|. . + .|+++.....          ...-.....     ..+    .  .+    .....+.++....-+...+  
T Consensus       209 y~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~sp~~a~l~~rgL--  286 (432)
T PRK06702        209 YIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQLLRDYGNCMSPFNAYISNIGL--  286 (432)
T ss_pred             ccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHHHHHHccCCCCHHHHHHHHhcc--
Confidence            6543 2 2 3444432210          000000000     000    0  00    0011233333333222222  


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC---C------------CcccceEEEEEccc--cchHHHhccc--
Q 040741          311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM---E------------RRYIGNLNLSFAYV--EGESLLMGLK--  371 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~------------~~~~~~~~~~~~~~--~~~~~~~~l~--  371 (457)
                        +.++.++++..+++..+.+.|++ .|.+..+..|   .            ...++++.|.+++-  ....++..|+  
T Consensus       287 --~Tl~lR~~r~~~Na~~la~~L~~-~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~~sf~l~~~~~~~~~f~~~l~l~  363 (432)
T PRK06702        287 --ETLHLRMERHSENALAVAKWLAD-HERIEWVNYPGLDSNENYSLAQKYLKKGASGVLTFGIKGGLEAAKEFIANVKLA  363 (432)
T ss_pred             --CcHHHHHHHHHHHHHHHHHHHHh-CCCcceEECCCCCCCccHHHHHHhCcCCCceEEEEEecCCHHHHHHHHHhCccc
Confidence              24678888889999999999999 7876433222   1            13467788887631  1235556553  


Q ss_pred             CeEecccCccC----CCCCChh----HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          372 EVAVSSGSACT----SASLEPS----YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       372 ~i~~~~g~~~~----~~~~~~~----~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+++.-|..-+    |....++    -..+..|+.+    +.|||+++.    ||+|.+++.|+++++-
T Consensus       364 ~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~----~liRlSvGl----Ed~eDLi~Dl~~Al~~  424 (432)
T PRK06702        364 TLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTS----DLIRLSVGI----EDVSDIIADLEAALVG  424 (432)
T ss_pred             eeccccCCCCcceECCCCCCcccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhc
Confidence            45555554322    2222221    1233566654    899999996    8899999999998864

>PLN02509 cystathionine beta-lyase

Probab=99.92  E-value=3.1e-23  Score=207.08  Aligned_cols=304  Identities=16%  Similarity=0.112  Sum_probs=210.3

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |+....+....++++++++.|.+.  +++++||+.|+.+++ .+.    ++||+||++.+.|.++...+. .+...|+++
T Consensus       127 Y~r~gnpt~~aLE~~lA~leg~e~--ai~~~SG~aAi~~il-~ll----~~GD~VI~~~~~y~~t~~ll~~~l~~~G~~v  199 (464)
T PLN02509        127 YTRSGNPTRDALESLLAKLDKADR--AFCFTSGMAALSAVT-HLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVV  199 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCE--EEEeCcHHHHHHHHH-HHh----CCCCEEEEcCCchhhHHHHHHHHHHHCCeEE
Confidence            333334678899999999998653  677788888876544 455    899999999999988765543 335569999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ++++..     |+++++++++++|++|++++++||+|.+.|+++|.++|+++|+++++|++++.+...... ..++|+++
T Consensus       200 ~~vd~~-----d~e~l~~ai~~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~pl-~~gaDivv  273 (464)
T PLN02509        200 KRVNTT-----NLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVM  273 (464)
T ss_pred             EEeCCC-----CHHHHHHhCCcCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCChh-hcCCcEEE
Confidence            888643     799999999999999999999999999999999999999999999999999877543222 35789999


Q ss_pred             eccccccC-CCC--ceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYG-PKG--VGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       254 ~s~~K~~g-~~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +|++|+++ +.+  .|+++++++.. .++.......       .+..++..++.+...+    +.++.++++.++++.++
T Consensus       274 ~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~-------g~~l~p~~A~l~lr~L----~tL~~R~~r~~~nA~~l  342 (464)
T PLN02509        274 HSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSE-------GSGLAPFDCWLCLRGI----KTMALRIEKQQENARKI  342 (464)
T ss_pred             ecCcccccCCCccceeEEEeccHHHHHHHHHHHHhc-------CCCcCHHHHHHHHhhh----hhHHHHHHHHHHHHHHH
Confidence            99999554 444  68888765432 2222111111       1123333322222222    34677888999999999


Q ss_pred             HHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEcccc-chHHHhccc--CeEecccCccC----CCCCCh
Q 040741          330 LNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYVE-GESLLMGLK--EVAVSSGSACT----SASLEP  388 (457)
Q Consensus       330 ~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~----~~~~~~  388 (457)
                      .+.|++ .|.+. ++-+  ++           ...++++.|.+.+.+ ...++..|+  .++++-|...+    +....+
T Consensus       343 a~~L~~-~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~~~~~~f~~~l~l~~~a~slG~~~SLi~~p~~~sh  421 (464)
T PLN02509        343 AMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSH  421 (464)
T ss_pred             HHHHhc-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCHHHHHHHHHcCCcceEcccCCCCCceeeCCccccc
Confidence            999998 78763 3321  11           134677777763211 235566664  55556665433    221211


Q ss_pred             ----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          389 ----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       389 ----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                          .-..+..|+++    +.||++++.    ||+|.+++.|+++++
T Consensus       422 ~~~~~~~~~~~Gi~~----~liRlSvGl----E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        422 ASIPAEVREARGLTE----DLVRISAGI----EDVDDLISDLDIAFR  460 (464)
T ss_pred             ccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHc
Confidence                12334566654    899999997    788889999988875

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.92  E-value=3.6e-23  Score=201.29  Aligned_cols=278  Identities=14%  Similarity=0.107  Sum_probs=195.5

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC
Q 040741          102 AVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD  181 (457)
Q Consensus       102 ~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~  181 (457)
                      ...++++.+++++|.++++|++|+|+++++.+++. +.    ++++ |++..+.|+.+...++..   |++++.+|.+..
T Consensus        41 ~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~-~~----~~~~-vv~~~P~y~~y~~~~~~~---G~~v~~vp~~~~  111 (332)
T PRK06425         41 SYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLS-YI----NVGN-IIIVEPNFNEYKGYAFTH---GIRISALPFNLI  111 (332)
T ss_pred             CHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHH-Hh----CCCc-EEEeCCChHHHHHHHHHc---CCeEEEEeCCcc
Confidence            46789999999999999999999999999999886 44    5665 555588888888777666   999999998743


Q ss_pred             CCCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----c-cc-CCCCcccEE
Q 040741          182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----P-VD-VEKWNVSLM  252 (457)
Q Consensus       182 ~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~-~~-~~~~~~Di~  252 (457)
                       ..|.+.+++   .++++|++++++||||.+.+   +++|.++|++++++|++|+++.--..    + .. ....+.-++
T Consensus       112 -~~~~~~l~~---~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~  187 (332)
T PRK06425        112 -NNNPEILNN---YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVII  187 (332)
T ss_pred             -cCcHHHHhh---cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEE
Confidence             346655543   47889999999999999998   56677788999999999999873221    1 01 112234578


Q ss_pred             EeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       253 ~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      +.|++|.+|.+|  +|+++++++.++++......+         +.+......+ ... .....+++..+.+++.++++.
T Consensus       188 ~~SfSK~~~l~GlRiGy~v~~~~li~~l~~~~~~~---------~~~~~~~~~l-~~~-~~~~~~~~~~~~~~~~r~~l~  256 (332)
T PRK06425        188 GRSLTKILGIPSLRIGYIATDDYNMKISRKITEPW---------SVCDPAIDFI-RSI-DLDYVAKHSLDIMENERSYLI  256 (332)
T ss_pred             EeecHHhcCCchhhheeeecCHHHHHHHHHcCCCC---------ccCHHHHHHH-HHh-hhHHHHHHHHHHHHHHHHHHH
Confidence            889999988666  899999877666554432111         2222221111 111 111234567888889999999


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      +.|++ + ++.+..++.   ++++.+.++  +..++...+  +||.+.+|..+..                 .+.++|||
T Consensus       257 ~~L~~-~-g~~~~~~~~---g~f~~~~~~--~~~~~~~~l~~~gi~v~~~~~f~~-----------------~~~~~iRi  312 (332)
T PRK06425        257 NNLEA-M-GFRAAGDPS---ANFITFMIP--DAHDFYSYLLKNGILVRLLDDYEC-----------------LGEQYIRI  312 (332)
T ss_pred             HHHHH-C-CCEECCCCC---ceEEEEEcC--CHHHHHHHHHHCCeEEEECCCCCC-----------------CCCCEEEE
Confidence            99998 5 666643222   344445544  456666655  7999998864321                 11379999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +++.   .++.++++++|++++
T Consensus       313 s~~~---~~~~~~l~~al~~~~  331 (332)
T PRK06425        313 AIRR---RSFNIKLVNALRNFL  331 (332)
T ss_pred             EeCC---HHHHHHHHHHHHHHh
Confidence            9984   899999999998764

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.92  E-value=5.3e-23  Score=200.15  Aligned_cols=304  Identities=17%  Similarity=0.140  Sum_probs=214.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG---ASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~i~~t~g~T~a~  131 (457)
                      .+.+.|+.+.+. ++|+.+++++.+.+....      .+.|.   .....++++.++++++   ++++++++|+|+++++
T Consensus        19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~------~~~Y~---~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i   89 (335)
T PRK14808         19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDT------LRIYY---DSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (335)
T ss_pred             CceeEecCCCCCCCCCHHHHHHHHHHhhhhh------hhcCC---CCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHH
Confidence            466888887766 678999999988764210      00011   1236678999999998   7888999999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      .+++.++        +.|++..++|+.+...++.+   |.+++.++.+.++.++...    + ..+++++++++|||||.
T Consensus        90 ~~~~~~~--------d~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~----~-~~~~~i~i~nP~NPTG~  153 (335)
T PRK14808         90 YVMMLMF--------DRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVN----V-GEGDVVFIPNPNNPTGH  153 (335)
T ss_pred             HHHHHHh--------CcEEECCCCHHHHHHHHHHc---CCeEEEecCCCcCCCChhH----c-cCCCEEEEeCCCCCCCC
Confidence            9988765        46999999999998888777   9999999988766554332    2 35689999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCC--Cccc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGK--IPVD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~--~~~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      +.+.+++.+++ +++++|++|+++.--.  .... ......-+++.|++|.+|.+|  +|+++++++.++++......  
T Consensus       154 ~~s~~~l~~l~-~~~~~ii~DE~Y~~f~~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~v~~~~~~~~l~~~~~~--  230 (335)
T PRK14808        154 VFEREEIERIL-KTGAFVALDEAYYEFHGESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYVVSSEKFIDAYNRVRLP--  230 (335)
T ss_pred             CcCHHHHHHHH-hcCCEEEEECchhhhcCCchHHHHHhCCCEEEEEechhhccCcccceEEEEeCHHHHHHHHHhcCC--
Confidence            99999999998 5799999999986321  1111 112233578889999888665  89999987766655433311  


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                             ...+.....++..+++. .+.+.+..+...+.++++.+.|++ . ++.+..+ +   ++++.+.++..+...+
T Consensus       231 -------~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~-~---g~f~~~~l~~~~~~~~  296 (335)
T PRK14808        231 -------FNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDS-R---GNFVFIFMEKEEKERL  296 (335)
T ss_pred             -------CCCCHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEECCC-C---CeEEEEeCCCccHHHH
Confidence                   12334444444455542 223455566777778888899988 4 6665543 2   4555555554444566


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ...+  +||.++.   |                     .+++||+++.   .++.++++++|++
T Consensus       297 ~~~l~~~Gi~V~~---~---------------------~~~~Risi~~---~~~~~~~~~~l~~  333 (335)
T PRK14808        297 LEHLRAKNIAVRS---F---------------------REGVRITIGK---REENDMILKELEV  333 (335)
T ss_pred             HHHHHHCCeEEEE---C---------------------CCCeEEecCC---HHHHHHHHHHHHh
Confidence            6665  6888862   1                     1579999985   7899999998875

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.92  E-value=2.3e-23  Score=204.95  Aligned_cols=332  Identities=20%  Similarity=0.200  Sum_probs=220.5

Q ss_pred             CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEE
Q 040741           70 DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHV  149 (457)
Q Consensus        70 ~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~v  149 (457)
                      .++.++++.+.+.+.+-...          .+.+.++|+.+++++|.+.  ++.++|||.|+.+++.++..   ++|++|
T Consensus         4 ~~e~~~~v~~~l~s~~~~~~----------g~~~~~fE~~~a~~~g~~~--~~~~~sgt~Al~~al~~l~~---~~gdeV   68 (363)
T PF01041_consen    4 TEEEIDAVLEVLRSGWLSTY----------GPYVEEFEKEFAEYFGVKY--AVAVSSGTSALHLALRALGL---GPGDEV   68 (363)
T ss_dssp             HHHHHHHHHHHHHHTCCSSS----------SHHHHHHHHHHHHHHTSSE--EEEESSHHHHHHHHHHHTTG---GTTSEE
T ss_pred             CHHHHHHHHHHHHhCCccCC----------CHHHHHHHHHHHHHhCCCe--EEEeCChhHHHHHHHHhcCC---CcCceE
Confidence            46778888888876432110          1689999999999999754  99999999999999999876   799999


Q ss_pred             EEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCc
Q 040741          150 ITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIP  228 (457)
Q Consensus       150 i~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~  228 (457)
                      |++..++.++..++..+   |+++++++++ .++.+|+++++++|+++|+.|++.|.   .|...++++|.++|+++|++
T Consensus        69 i~p~~t~~~~~~ai~~~---G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~h~---~G~~~d~~~i~~~~~~~~i~  142 (363)
T PF01041_consen   69 IVPAYTFPATASAILWA---GAEPVFVDIDPETLNIDPEALEKAITPKTKAILVVHL---FGNPADMDAIRAIARKHGIP  142 (363)
T ss_dssp             EEESSS-THHHHHHHHT---T-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE-G---GGB---HHHHHHHHHHTT-E
T ss_pred             ecCCCcchHHHHHHHHh---ccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEecC---CCCcccHHHHHHHHHHcCCc
Confidence            99999999999999888   9999999999 77899999999999999999999887   79999999999999999999


Q ss_pred             EEEehhhhcCCCccc--CCCCcccEEEeccc--cccCCCCceEEEEecCCC-ccccccccCCcc---ccccccCC-CChh
Q 040741          229 FHTDAAQALGKIPVD--VEKWNVSLMSLSGH--KIYGPKGVGALYMRRRPR-IRVEPLINGGGQ---ERGIRSGT-LPTP  299 (457)
Q Consensus       229 li~D~a~~~g~~~~~--~~~~~~Di~~~s~~--K~~g~~G~G~l~~~~~~~-~~~~~~~~~~~~---~~~~~~~t-~~~~  299 (457)
                      ||.|+||++|+..-+  +... -|+.++||+  |.+.....|+++++++.. ++++.+...+..   ...+.... +...
T Consensus       143 lIeD~a~a~g~~~~g~~~G~~-gd~~~fSf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n  221 (363)
T PF01041_consen  143 LIEDAAQAFGARYKGRPVGSF-GDIAIFSFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYN  221 (363)
T ss_dssp             EEEE-TTTTT-EETTEETTSS-SSEEEEESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B
T ss_pred             EEEccccccCceeCCEeccCC-CCceEecCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcc
Confidence            999999999875432  2222 377777775  765433359999887532 333333222211   01111111 0000


Q ss_pred             -HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc---ccceEEEEEccc---cchHHHhcc-
Q 040741          300 -LIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR---YIGNLNLSFAYV---EGESLLMGL-  370 (457)
Q Consensus       300 -~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~l-  370 (457)
                       -+..+.+|+-..+ +.+++..++.+++++++.+.|.+ ++++.....+...   ....+.+.++..   +.+.+...| 
T Consensus       222 ~rm~~~~AAigl~QL~~L~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~  300 (363)
T PF01041_consen  222 FRMSELQAAIGLAQLKRLDEIIARRRENAQRYREALAG-IPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALR  300 (363)
T ss_dssp             -B-BHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTT-GTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCCcccccccccccccccccccccccccccchHHHHHHHHH
Confidence             1111222332222 35788888999999999999999 8988665543322   233344555532   456777777 


Q ss_pred             -cCeEecccCccCCCCCChhHHHHH--------cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          371 -KEVAVSSGSACTSASLEPSYVLRA--------LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       371 -~~i~~~~g~~~~~~~~~~~~~l~~--------~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                       +||.+..... .+....|.  .+.        +...+....+.|.+.+....+.+|+++++++|+
T Consensus       301 ~~GI~~~~~~~-~pl~~~~~--~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  301 ARGIETRPHYP-KPLHRQPV--YRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             HTTBEEBCSTS-SCGGGSGG--GTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             HCCCccccccc-CchhhhHH--HHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence             6887776541 11111111  111        111112345799999999999999999999875

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=99.92  E-value=2.6e-22  Score=200.06  Aligned_cols=324  Identities=19%  Similarity=0.216  Sum_probs=213.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+....-. .+  .    -..+...+++++++++.+.  +.++|+++||
T Consensus        37 ~~G~~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~~~-~~--~----~~~~~~~~l~~~l~~~~~~--~~~~~~~SGs  107 (396)
T PRK04073         37 PEGNRYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLT-SR--A----FHSDQLGPWYEKVAKLTGK--DMVLPMNTGA  107 (396)
T ss_pred             CCCCEEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcccc-cc--c----cCCHHHHHHHHHHHhcCCC--CeEEEcCChH
Confidence            345568887433      247899999999998753211 10  0    1125667889999998875  3599999999


Q ss_pred             HHHHHHHHHhhhhhc------CCCCEEEEc-CCCCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHHHHHh
Q 040741          129 ESNNVSIKGVMHFYK------DKKRHVITT-QTEHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~~------~~g~~vi~~-~~~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      +|++.+++....+..      ..+++|++. ...|.....+.......+.         .+..++.+     |+++++++
T Consensus       108 eA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~  182 (396)
T PRK04073        108 EAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAA  182 (396)
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHh
Confidence            999999998765421      123455554 5567777666544321111         12223322     88999999


Q ss_pred             cCCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccCCC
Q 040741          193 IRPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYGPK  263 (457)
Q Consensus       193 i~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g~~  263 (457)
                      +++++++|++++++|++|.+.|    +++|.++|++||+++|+|++|+ +|..    ..+.....+|++++  +|.+|..
T Consensus       183 i~~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~--sK~lg~g  260 (396)
T PRK04073        183 ITPNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKLFACDWDNVTPDMYIL--GKALGGG  260 (396)
T ss_pred             cccCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEe--cccccCC
Confidence            9989999999999999999987    8899999999999999999997 3321    11222335787765  5966543


Q ss_pred             --CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          264 --GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       264 --G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                        .+|+++++++..+.+.....+      ... ..++..+++..++++.+.+  +...++.+++.+++.+.|++ +.. .
T Consensus       261 g~~ig~~~~~~~i~~~~~~~~~~------~t~-~~~~~~~aaa~aaL~~~~~--~~l~~~~~~~~~~l~~~L~~-l~~-~  329 (396)
T PRK04073        261 VFPISCVAANRDILGVFTPGSHG------STF-GGNPLACAVSIAALEVLEE--EKLPERSLELGEYFKEQLKE-IDN-P  329 (396)
T ss_pred             CCcceEEEEcHHHHhhhcCCCCC------CCC-CCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHh-hcC-C
Confidence              389999988766555432111      111 3455666666678877654  34557777888999998887 421 1


Q ss_pred             EeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          342 VNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .+.+. ...+.++.+.+. .+...+...|  +||.+.+.                       ..++|||+++..+++||+
T Consensus       330 ~i~~~-~~~g~~~~~~~~-~~~~~~~~~l~~~Gv~~~~~-----------------------~~~~iRi~p~l~~t~e~i  384 (396)
T PRK04073        330 MIKEV-RGRGLFIGVELN-EPARPYCEALKEEGLLCKET-----------------------HETVIRFAPPLVITKEEL  384 (396)
T ss_pred             cccce-ecceEEEEEEec-chHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECCcccCHHHH
Confidence            11111 112344444443 2344555555  57766421                       126899999999999999


Q ss_pred             HHHHHHHHHHH
Q 040741          420 DRAIELTVKQV  430 (457)
Q Consensus       420 d~~~~~l~~~~  430 (457)
                      |+++++|++++
T Consensus       385 ~~~~~~l~~~l  395 (396)
T PRK04073        385 DWAFEKIKAVL  395 (396)
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>PRK07505 hypothetical protein; Provisional

Probab=99.92  E-value=4.1e-22  Score=199.10  Aligned_cols=336  Identities=12%  Similarity=0.116  Sum_probs=212.0

Q ss_pred             CCCcEEecCCCCCCC----CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           55 AGRPLYLDMQATTPV----DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~----~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      ..+.-|+|+.+...+    +|++.+++.+++.. +++.++.... +....+...++++.|+++++.   +.++.++|++|
T Consensus        43 ~~g~~~ld~~s~~~lgl~~~p~v~~A~~~~l~~-~g~~~~~~~~-~~~~~~~~~~l~~~la~~~~~---~~~~~~sG~~a  117 (402)
T PRK07505         43 ADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKR-TGSLHLSSSR-TRVRSQILKDLEEALSELFGA---SVLTFTSCSAA  117 (402)
T ss_pred             cCCceEEEeecCCccCCCCCHHHHHHHHHHHHH-hCCCCCCccc-hhhhhHHHHHHHHHHHHHhCC---CEEEECChHHH
Confidence            345568888776654    89999999999975 3321111111 112346889999999999997   36666677889


Q ss_pred             HHHHHHHhhhh-hc-CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccc
Q 040741          131 NNVSIKGVMHF-YK-DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       131 ~~~al~~~~~~-~~-~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      +..+++.+... +. ++++.|+....+|++......... .+.+++.++.+     |++++++++++++++++++.++|+
T Consensus       118 ~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~~v~~~~~~-----d~~~l~~~~~~~~~~~vl~~p~~~  191 (402)
T PRK07505        118 HLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DETEVETIDHN-----DLDALEDICKTNKTVAYVADGVYS  191 (402)
T ss_pred             HHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCCeEEEeCCC-----CHHHHHHHHhcCCCEEEEEecccc
Confidence            98888764421 11 234456666788887654333222 35677777764     899999999888888888899999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCC-----ccc---CC--CCcccEEEeccccccCCCCceEEEE-ecCCCcc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVD---VE--KWNVSLMSLSGHKIYGPKGVGALYM-RRRPRIR  277 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~---~~--~~~~Di~~~s~~K~~g~~G~G~l~~-~~~~~~~  277 (457)
                      +|.+.|+++|.++|++||+++|+|++|+.+..     ...   ..  ..+..+++.|++|.+|..| |++++ +++..+.
T Consensus       192 ~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~G-g~~~~~~~~~~~~  270 (402)
T PRK07505        192 MGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGASG-GVIMLGDAEQIEL  270 (402)
T ss_pred             cCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhccC-eEEEeCCHHHHHH
Confidence            99999999999999999999999999864211     111   11  1234577789999888665 77765 4344344


Q ss_pred             ccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      +......+     ...+++++..++++.++++...+ .+.+..++++++.+.+...+..  +   +   ... ...+..+
T Consensus       271 ~~~~~~~~-----t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~---~---~g~-~~~i~~~  336 (402)
T PRK07505        271 ILRYAGPL-----AFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPT--E---Q---SGS-FLPIRLI  336 (402)
T ss_pred             HHHhCCCc-----eeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHh--c---C---CCC-CCCEEEE
Confidence            43322111     12345666777777777775543 3555555555555444333222  1   0   111 1111122


Q ss_pred             EEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          357 SFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       357 ~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+... ....+...|  +||.+.+......                ....++|||+++..+++||+++++++|++++++
T Consensus       337 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~p~~----------------~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~  399 (402)
T PRK07505        337 YIGDEDTAIKAAKQLLDRGFYTSPVFFPVV----------------AKGRAGLRIMFRASHTNDEIKRLCSLLKEILDE  399 (402)
T ss_pred             EeCCHHHHHHHHHHHHHCCCeEeeecCCCC----------------CCCCceEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            22211 234555555  6888875421100                012268999999999999999999999988754

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.92  E-value=7.9e-23  Score=201.05  Aligned_cols=308  Identities=16%  Similarity=0.112  Sum_probs=201.8

Q ss_pred             cEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-------CCCCCcEEEeCChHH
Q 040741           58 PLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-------GASPKEIIFTSGATE  129 (457)
Q Consensus        58 ~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-------g~~~~~i~~t~g~T~  129 (457)
                      .+.|..+.+. ++++.+.+++.+... ...++..          ....++++.+++++       |++++++++|+|+++
T Consensus        23 ~i~l~~~~p~~~~~~~~~~~~~~~~~-~~~Y~~~----------~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~   91 (357)
T TIGR03539        23 IVDLSVGTPVDPVPPLIRAALAAAAD-APGYPQT----------WGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKE   91 (357)
T ss_pred             eEEccCCCCCCCCCHHHHHHHHHHHh-hCCCCcc----------cCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHH
Confidence            3455544333 557778888776543 1111111          12334455555554       466889999999999


Q ss_pred             HHHHHHHHh-hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccc
Q 040741          130 SNNVSIKGV-MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       130 a~~~al~~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      ++.+++..+ .    ++||.|+++.+.|+++...++..   |++++.++       |++.++   .+++++|++++++||
T Consensus        92 ~i~~~~~~l~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~-------~~~~l~---~~~~~~v~~~~p~NP  154 (357)
T TIGR03539        92 LVAWLPTLLGL----GPGDTVVIPELAYPTYEVGALLA---GATPVAAD-------DPTELD---PVGPDLIWLNSPGNP  154 (357)
T ss_pred             HHHHHHHHHcC----CCCCEEEECCCCcHHHHHHHHhc---CCEEeccC-------ChhhcC---ccCccEEEEeCCCCC
Confidence            999988877 5    89999999999999888776655   88887764       333332   357899999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcCC---Cccc-CC------CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVD-VE------KWNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~-~~------~~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      ||.+.+   +++|.++|+++|+++|+|+++..-.   .+.. +.      .....+++.|++|.+|.+|  +|+++++++
T Consensus       155 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~~  234 (357)
T TIGR03539       155 TGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDPA  234 (357)
T ss_pred             cCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCHH
Confidence            999998   6678899999999999999986311   1111 10      1123488889999887666  799998776


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      .+.++.......       ...++.....++..+++. ...+.+..++++++++.+.+.|++ . ++.+..+ ..  +.+
T Consensus       235 ~~~~~~~~~~~~-------~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~L~~-~-g~~~~~p-~~--~~~  301 (357)
T TIGR03539       235 LVAELLTVRKHA-------GLMVPAPVQAAMVAALGD-DGHVAEQKARYAARRAQLKPALEK-A-GFRIDHS-EA--GLY  301 (357)
T ss_pred             HHHHHHHHHhhc-------ccCCCHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHH-c-CCCCcCC-Cc--cEE
Confidence            655554332211       123454555555455532 234667778888888999999988 4 5554432 11  222


Q ss_pred             EEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      +.+..+ .+..++...|  +||.+.+|..+..                 ..+++|||+++.  +.+++++++++|
T Consensus       302 ~~~~~~-~~~~~~~~~l~~~gV~v~pg~~f~~-----------------~~~~~iRis~~~--~~~~i~~~~~~l  356 (357)
T TIGR03539       302 LWATRG-EDAWDTVDRLAELGILVAPGDFYGP-----------------AGSQHVRVALTA--TDERIAAAVARL  356 (357)
T ss_pred             EEEECC-CCHHHHHHHHHhCCEEECCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHhh
Confidence            222222 2344565555  6899988764321                 123799999986  578999888775

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PLN02672 methionine S-methyltransferase

Probab=99.92  E-value=3.3e-22  Score=213.37  Aligned_cols=326  Identities=12%  Similarity=0.098  Sum_probs=227.0

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC---cEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK---EIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---~i~~t~g~T~a~  131 (457)
                      .+.|.|+.+.+. ++|+.+.+++.+.+...  +     +..++  .+....+.+++++..|.+.+   ++++++|+++++
T Consensus       697 ~~vI~LsinE~d~ppPp~V~eAi~eal~~~--~-----~s~g~--pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL  767 (1082)
T PLN02672        697 SSLIHMDVDESFLPVPSAVKASIFESFVRQ--N-----ISESE--TDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALF  767 (1082)
T ss_pred             CCEEEEeCCCCCCCCCHHHHHHHHHHHhhc--C-----CCCCC--hHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHH
Confidence            466899988777 78899999998876431  1     11111  23567888999999888654   799999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC-CceEEEEeccc-c
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP-DTGLISVMAVN-N  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~-~t~li~i~~~~-~  207 (457)
                      .+++.++.    ++||.|+++.+.|+.+...++..   |.+++.++.+.  +..+|++++++++++ .+++|++++++ |
T Consensus       768 ~lll~aLl----~pGD~VLVp~PtY~~Y~~~a~~~---Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhN  840 (1082)
T PLN02672        768 NKLVLCCV----QEGGTLCFPAGSNGTYVSAAKFL---KANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTIN  840 (1082)
T ss_pred             HHHHHHHc----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCC
Confidence            99999998    89999999999999999888776   99999999863  457889999999976 35678888886 9


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhc----CCC--cccCC----CC------cccEEEeccccccCCCC--ce
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQAL----GKI--PVDVE----KW------NVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~----g~~--~~~~~----~~------~~Di~~~s~~K~~g~~G--~G  266 (457)
                      |||.+++   +++|+++|++||++||+|++|+-    +..  ..++.    ..      ..-+++.|++|.|+.+|  +|
T Consensus       841 PTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGLRIG  920 (1082)
T PLN02672        841 PTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGHEFG  920 (1082)
T ss_pred             CcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHHHhe
Confidence            9999988   67788899999999999999962    111  00010    00      12356779999777666  99


Q ss_pred             EEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          267 ALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-------KKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       267 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                      |++++++ .++++......         ..+......++.+++...       .+.+.+.++.++++++++.+.|++ . 
T Consensus       921 ylIap~~eLi~~l~~~~~~---------s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~-~-  989 (1082)
T PLN02672        921 FLALNDSVLIDAFHSAPGL---------SRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEA-C-  989 (1082)
T ss_pred             eEEeCCHHHHHHHHHhhhh---------cCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-C-
Confidence            9998654 45555432110         011112222222233211       234567777889999999999998 4 


Q ss_pred             CeEEeCCCCCcccceEEEEEc------------------cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          339 GVVVNGSMERRYIGNLNLSFA------------------YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      ++.+..+. .  ..++.+.++                  +.+..++...|   .||.+.+|..+.              .
T Consensus       990 Gi~v~~Pe-G--GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG--------------~ 1052 (1082)
T PLN02672        990 GWDVLEPQ-G--GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG--------------I 1052 (1082)
T ss_pred             CCeEecCC-c--EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccC--------------C
Confidence            66665432 1  111111111                  12345566655   389999986431              1


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                           .+++||+++.  +++++++++++|+++.+.
T Consensus      1053 -----~g~~RIsfa~--~~e~LeeALerL~kf~~~ 1080 (1082)
T PLN02672       1053 -----PGYCRFSFAL--EDSEFDRALKAIARFKEL 1080 (1082)
T ss_pred             -----CCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                 2799999985  788999999999986653

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=99.92  E-value=3.2e-22  Score=199.99  Aligned_cols=324  Identities=17%  Similarity=0.182  Sum_probs=213.4

Q ss_pred             CcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.      +...|++.+++.+.+.... ...+      .-..+...+++++++++++.+  .++|++|||+|
T Consensus        40 g~~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~~-~~~~------~~~~~~~~~l~~~l~~~~~~~--~~~~~~SGs~A  110 (401)
T PRK00854         40 GNRYLDCLSAYSAVNQGHCHPKILAAMVEQAGRLT-LTSR------AFRNDQLAPLYEELAALTGSH--KVLPMNSGAEA  110 (401)
T ss_pred             CCEEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc-cccc------ccCCHHHHHHHHHHHhhCCCC--EEEEeCCcHHH
Confidence            3346775332      2348999999999987631 1110      011257888999999999864  59999999999


Q ss_pred             HHHHHHHhhhhh----c--CCCCEEEE-cCCCCcchHHHHHHHH---------hcCcEEEEEeCCCCCCCCHHHHHHhcC
Q 040741          131 NNVSIKGVMHFY----K--DKKRHVIT-TQTEHKCVLDSCRHLQ---------QEGFEITYLPVGADGIVNLDELRAAIR  194 (457)
Q Consensus       131 ~~~al~~~~~~~----~--~~g~~vi~-~~~~h~~~~~~~~~~~---------~~G~~v~~v~~~~~~~~d~~~le~~i~  194 (457)
                      ++.+++.+..+.    +  ..+++||+ ....|.+...+.....         .....+..++.     .|++++++++.
T Consensus       111 ~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~i~  185 (401)
T PRK00854        111 VETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPF-----GDAEALEAAIT  185 (401)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCC-----CCHHHHHHHhC
Confidence            999999886431    0  12245555 4455665544332110         00122333432     38999999999


Q ss_pred             CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcccEEEeccccccCCC--
Q 040741          195 PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVSLMSLSGHKIYGPK--  263 (457)
Q Consensus       195 ~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~Di~~~s~~K~~g~~--  263 (457)
                      +++++|++++++|++|.+.|    +++|.++|++||+++|+|++|+ +|...  +  ......+|+++++  |.++..  
T Consensus       186 ~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~--K~l~gg~~  263 (401)
T PRK00854        186 PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIG--KALSGGFY  263 (401)
T ss_pred             CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHhHHhhcCCCCCEEEec--ccccCCcc
Confidence            99999999999999999997    9999999999999999999998 55432  1  1122346888775  954322  


Q ss_pred             CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Q 040741          264 GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN  343 (457)
Q Consensus       264 G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  343 (457)
                      .+|+++++++..+.+.....+      ... ..++..+++..++++.+.+  ....++.+++.+++.+.|++ +.. ...
T Consensus       264 ~ig~v~~~~~~~~~l~~~~~~------~t~-~~~~~~~aa~~a~L~~l~~--~~~~~~~~~~~~~l~~~L~~-~~~-~~~  332 (401)
T PRK00854        264 PVSAVLSNSEVLGVLKPGQHG------STF-GGNPLACAVARAALKVLTE--EGMIENAAEMGAYFLEGLRS-IRS-NIV  332 (401)
T ss_pred             CeEEEEEcHHHHhcccCCCCC------CCC-CcCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHh-hcc-Cce
Confidence            379999988766655432211      111 2466667777778877654  34678888899999999987 432 111


Q ss_pred             CCCCCcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          344 GSMERRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      ... ...+.++.+.+..  .+..++...|  +||.+...                       ..++|||+++..++++||
T Consensus       333 ~~~-~g~g~~~~i~~~~~~~~~~~~~~~L~~~GV~v~~~-----------------------~~~~lR~~p~~~~t~e~i  388 (401)
T PRK00854        333 REV-RGRGLMLAVELEPEAGGARQYCEALKERGLLAKDT-----------------------HDHTIRLAPPLVITREQV  388 (401)
T ss_pred             EEE-eccceEEEEEEecCchhHHHHHHHHHHCCeEEecC-----------------------CCCEEEEeCCcccCHHHH
Confidence            111 1123444444422  1234565555  57766421                       126999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVE  431 (457)
Q Consensus       420 d~~~~~l~~~~~  431 (457)
                      |+++++|++++.
T Consensus       389 ~~~i~~l~~~l~  400 (401)
T PRK00854        389 DWALEQIAKVLA  400 (401)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>PRK04311 selenocysteine synthase; Provisional

Probab=99.92  E-value=4.4e-22  Score=198.77  Aligned_cols=339  Identities=15%  Similarity=0.150  Sum_probs=225.8

Q ss_pred             ceecccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           47 ITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        47 ~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ...+.+.+..+.+|+++.+.+++++++++++.+++.+. .+... ....+. ..+.+..+++.+++++|++.  ++++++
T Consensus        76 ~~lr~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~~-~~le~-~l~~g~-~g~r~~~~e~~lA~l~Gae~--a~vv~s  150 (464)
T PRK04311         76 PSLRPVINATGVVLHTNLGRALLSEAAIEAVTEAARGY-SNLEY-DLATGK-RGSRDRALAALLCALTGAED--ALVVNN  150 (464)
T ss_pred             CCCcceecCCccEEeccCCCCCCCHHHHHHHHHHHhcc-ccccc-chhhcc-cchHHHHHHHHHHHHhCCCe--EEEECC
Confidence            34477788888899999999999999999999998653 22111 011111 12457789999999999874  888899


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHH---HHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEe
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLD---SCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~---~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      ++.|+.+++.++     .+|++||+++.+|.....   ....+...|+++++++.+  +..++++++++|+++|++|+++
T Consensus       151 gtaAl~l~l~~l-----~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~~~TklV~~v  223 (464)
T PRK04311        151 NAAAVLLALNAL-----AAGKEVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAINENTALLLKV  223 (464)
T ss_pred             HHHHHHHHHHHh-----CCCCEEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcCccCeEEEEE
Confidence            999999888653     589999999887763321   122345669999998764  3357999999999999999999


Q ss_pred             ccccc--cc--cccChHHHHHHHHhcCCcEEEehhhhc---------CCCcc--cCCCCcccEEEeccccccCCCCceEE
Q 040741          204 AVNNE--IG--VIQPMEEIGQICKEFKIPFHTDAAQAL---------GKIPV--DVEKWNVSLMSLSGHKIYGPKGVGAL  268 (457)
Q Consensus       204 ~~~~~--~G--~~~~l~~i~~l~~~~~v~li~D~a~~~---------g~~~~--~~~~~~~Di~~~s~~K~~g~~G~G~l  268 (457)
                      +++|+  +|  ...|+++|+++||+||+++++|.+++.         +..+.  +..+.++|++++|++|++|++..|++
T Consensus       224 h~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i  303 (464)
T PRK04311        224 HTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGII  303 (464)
T ss_pred             cCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEE
Confidence            99997  34  568999999999999999999996432         12221  12236899999999996654457999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHhhc
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK------------EMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~------------~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      +++++.+++++....+    +.+   ...-..+.++.+++.....            .+....++..++++.+.+.|+. 
T Consensus       304 ~g~~~li~~l~~~~~~----r~l---r~dk~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~-  375 (464)
T PRK04311        304 VGKKELIARLKKHPLK----RAL---RVDKLTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKA-  375 (464)
T ss_pred             EEcHHHHHHHhhchhH----HHH---hcchHHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHh-
Confidence            9998776655421111    111   2233345555555543321            1344456777788888888877 


Q ss_pred             CC--C--eEEeCC---------CCCcccceEEEEEc--cccchHHHhcccC----eEecccCccCCCCCChhHHHHHcCC
Q 040741          337 LD--G--VVVNGS---------MERRYIGNLNLSFA--YVEGESLLMGLKE----VAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       337 ~~--~--~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~l~~----i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      .+  +  +.+...         +.... +...+.+.  ..+..++...|+.    |..+                     
T Consensus       376 ~~~~~~~~~~~~~~~~~gggs~p~~~~-~~~~v~~~~~~~~~~~l~~~lr~~~~~i~~r---------------------  433 (464)
T PRK04311        376 ALGAAFAVEVVPSFSQVGGGSLPVDRL-PSAAVTLTPKDRSLEALAARLRLLPPPVIGR---------------------  433 (464)
T ss_pred             ccCCCeeEEEEEccCccCCCCCcCCCC-CeEEEEEeCCCCCHHHHHHHHhcCCCCEEEE---------------------
Confidence            43  2  344422         11111 22233343  3455677777642    3222                     


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                         ..++.+.+-+-. ..++|++.+++++++.+.
T Consensus       434 ---~~~~~~~ld~r~-~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        434 ---IEDGRLLLDLRT-LEEEDEERLAAALLEALN  463 (464)
T ss_pred             ---EECCEEEEEeCc-CCHHHHHHHHHHHHHHhh
Confidence               112566666544 457899999999988754

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.92  E-value=4.4e-23  Score=201.78  Aligned_cols=300  Identities=16%  Similarity=0.123  Sum_probs=204.2

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc-CcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE-GFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~-G~~  172 (457)
                      .|++...+...+++++++++.|.+  +++.++||++|+.+++. +.    ++||+||++...|.+....+...... +..
T Consensus        47 ~Y~R~~~p~~~~le~~lA~leg~~--~~v~~~sG~aAi~~~l~-~l----~~GD~VI~~~~~yg~~~~~~~~~~~~~~~~  119 (364)
T PRK07269         47 DYTRTKNPTRAKLEETLAAIESAD--YALATSSGMSAIVLAFS-VF----PVGSKVVAVRDLYGGSFRWFNQQEKEGRFH  119 (364)
T ss_pred             ceeCCCCccHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHH-Hh----CCCCEEEEecCCcCchHHHHHHHHhcCcEE
Confidence            344444578889999999999865  49999999999999884 55    79999999998888776544433222 333


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +.+       ..|+++++++++++|++|++++++||+|.+.++++|+++|+++|+++++|++++.+... .....++|++
T Consensus       120 ~~~-------~~d~~~l~~~i~~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~~-~pl~~gaDiv  191 (364)
T PRK07269        120 FTY-------ANTEEELIAAIEEDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIYQ-RPIELGADIV  191 (364)
T ss_pred             EEe-------cCCHHHHHHhcCcCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-CchhhCCcEE
Confidence            222       14899999999999999999999999999999999999999999999999998655432 2234579999


Q ss_pred             EeccccccCC-CC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGP-KG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~g~-~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|++|+++. ..  .|+++++++ ..+++......       .....++...+-+...+    +.++.++++..+++.+
T Consensus       192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~-------~G~~~s~~~a~l~~~~L----~tL~~r~~~~~~na~~  260 (364)
T PRK07269        192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNT-------TGAVLSPFDSYLLMRGL----KTLSLRMERSTANAQE  260 (364)
T ss_pred             EecCceeccCCCcccceEEEeCcHHHHHHHHHHHHH-------hCCCCCHHHHHHHHcCC----CcHHHHHHHHHHHHHH
Confidence            9999996654 32  588777543 33333321111       01133333333222222    2478888899999999


Q ss_pred             HHHHHhhcCCCeE-EeCCCCCcccceEEEEEccc-cchHHHhccc--CeEecccCccC----CCCCC----hhHHHHHcC
Q 040741          329 LLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSACT----SASLE----PSYVLRALG  396 (457)
Q Consensus       329 l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~----~~~~l~~~g  396 (457)
                      +.+.|++ .|.+. ++-++   .++++.|.+... ....+...++  .++.+-|...+    |....    +......+|
T Consensus       261 ~a~~L~~-~p~v~~v~ypg---~gg~~sf~~~~~~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r~~~G  336 (364)
T PRK07269        261 VVAFLKK-SPAVKEVLYTG---KGGMISFKVADETRIPHILNSLKVFTFAESLGGVESLITYPTTQTHADIPAEVRHSYG  336 (364)
T ss_pred             HHHHHHh-CCCccEEeCCC---cCcEEEEEECCHHHHHHHHHhCCcceEccCCCCcCeEeeCCcccccccCCHHHHHhcC
Confidence            9999998 78753 33222   367777776431 1224444442  34444444322    22111    123344677


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +.+    +.|||+++.    ||++.+++.|+++++
T Consensus       337 i~~----~liRlsvGl----E~~~dli~dl~~al~  363 (364)
T PRK07269        337 LTD----DLLRLSIGI----EDARDLIADLKQALE  363 (364)
T ss_pred             CCC----CeEEEEecc----CCHHHHHHHHHHHhc
Confidence            765    899999996    788889998888764

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=99.92  E-value=4.7e-22  Score=197.92  Aligned_cols=327  Identities=17%  Similarity=0.184  Sum_probs=207.9

Q ss_pred             CCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+      -+...|++.+++.+.+.........      + ..+...++.++|+++.+.  ++++|++||++
T Consensus        29 dG~~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~------~-~~~~~~~la~~l~~~~~~--~~v~~~~sGse   99 (389)
T PRK01278         29 DGERYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNL------Y-RIPEQERLAERLVENSFA--DKVFFTNSGAE   99 (389)
T ss_pred             CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccc------c-CChHHHHHHHHHHhhCCC--CEEEEcCCcHH
Confidence            3445788755      2357899999999998753222110      1 125667888999998754  46999999999


Q ss_pred             HHHHHHHHhhhhhcCCCC----EEEEcCCCCcchHHHHHHHHhcCcEEEEE----eCCCC----CCCCHHHHHHhcCCCc
Q 040741          130 SNNVSIKGVMHFYKDKKR----HVITTQTEHKCVLDSCRHLQQEGFEITYL----PVGAD----GIVNLDELRAAIRPDT  197 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v----~~~~~----~~~d~~~le~~i~~~t  197 (457)
                      |++.+++.+..+...+|+    +||+.+..|.+....+..+   +....+.    +...+    ...|++++++++++++
T Consensus       100 A~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~  176 (389)
T PRK01278        100 AVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAA---GGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITPNT  176 (389)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhc---cCChhhcccCCCCCCCceEeCCCCHHHHHHhhCCCe
Confidence            999999988654334454    7877776666655544433   1111111    11111    1258999999999899


Q ss_pred             eEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC-CCceE
Q 040741          198 GLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP-KGVGA  267 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~-~G~G~  267 (457)
                      ++|+++.+++++|...    .+++|.++|++||+++|+|++|+ +|..  .+  ......+|++  +++|.+++ ..+|+
T Consensus       177 ~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~  254 (389)
T PRK01278        177 AAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGA  254 (389)
T ss_pred             EEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCcceeecccCCCCCEE--EEehhccCCcceEE
Confidence            9999999999888543    38999999999999999999997 3221  11  1112345765  55696552 23899


Q ss_pred             EEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh---cCCCeEEeC
Q 040741          268 LYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE---KLDGVVVNG  344 (457)
Q Consensus       268 l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~  344 (457)
                      ++++++..+.+.....+      ... +.++..++++.++++.+++  ....++.+++.+++++.|++   ..+++  ..
T Consensus       255 ~~~~~~~~~~~~~~~~~------~t~-~~~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~  323 (389)
T PRK01278        255 CLATEEAAKGMTPGTHG------STY-GGNPLAMAVGNAVLDVILA--PGFLDNVQRMGLYLKQKLEGLVDRFPDV--IE  323 (389)
T ss_pred             EEEcHHHHhccCCCCCC------CCC-CccHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhhCCCc--ee
Confidence            99987765555432221      111 3566667777777877654  23344455555555555443   13322  11


Q ss_pred             CCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          345 SMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                      .. ...+.++.+.+. .+..++...+  +||.+.++.                       .+.|||+++..+++++++++
T Consensus       324 ~v-~g~G~~~~i~~~-~~~~~~~~~l~~~GV~~~p~~-----------------------~~~lR~~p~~~~~~~~i~~~  378 (389)
T PRK01278        324 EV-RGKGLLLGLKCV-VPNRDLVQALRDEGLLTVGAG-----------------------DNVVRLLPPLIITEEEIDEA  378 (389)
T ss_pred             eE-ecccEEEEEEEe-cCHHHHHHHHHHCCeEEeecC-----------------------CCEEEEeCCcccCHHHHHHH
Confidence            11 111233333332 2345566555  588776542                       27899999988899999999


Q ss_pred             HHHHHHHHHH
Q 040741          423 IELTVKQVEK  432 (457)
Q Consensus       423 ~~~l~~~~~~  432 (457)
                      +++|++++++
T Consensus       379 l~~l~~~l~~  388 (389)
T PRK01278        379 LERLERAAES  388 (389)
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.92  E-value=1.1e-22  Score=204.22  Aligned_cols=307  Identities=18%  Similarity=0.158  Sum_probs=195.8

Q ss_pred             HHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhhhhhc-CCCCEEEE-cCCCCcchHHHHHHHH-hcCcEE
Q 040741          103 VETARSQIADLI----G--ASPKEIIFTSGATESNNVSIKGVMHFYK-DKKRHVIT-TQTEHKCVLDSCRHLQ-QEGFEI  173 (457)
Q Consensus       103 ~~~~~~~la~~~----g--~~~~~i~~t~g~T~a~~~al~~~~~~~~-~~g~~vi~-~~~~h~~~~~~~~~~~-~~G~~v  173 (457)
                      ..++++.+++++    |  +++++|++|+|+++|+.+++.++..... ++|+.|++ ..++|+.+...+.... ..+..+
T Consensus        76 ~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~  155 (416)
T PRK09440         76 KDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRP  155 (416)
T ss_pred             CHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeeccc
Confidence            456666666665    3  6788999999999999999998872000 25889999 6999998877554221 012222


Q ss_pred             EEEeCCC---CCCCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc---cC
Q 040741          174 TYLPVGA---DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV---DV  244 (457)
Q Consensus       174 ~~v~~~~---~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~---~~  244 (457)
                      ..++++.   +..+|+++++  ++++++++++++++||||.+.+   +++|+++|++||++||+|++|+......   +.
T Consensus       156 ~~~~~~~~~~~~~~d~~~l~--~~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~  233 (416)
T PRK09440        156 NIELLPEGQFKYHVDFEHLH--IDEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFPGIIFSEA  233 (416)
T ss_pred             ccccccccccccCCCHHHcc--cCCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCCCcchhhc
Confidence            2333332   2468999987  4677899999999999999998   6678889999999999999996321111   11


Q ss_pred             CC--CcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHH-
Q 040741          245 EK--WNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDY-  317 (457)
Q Consensus       245 ~~--~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~-  317 (457)
                      ..  .+.-+++.|++|. +.+|  +|+++++++.++++......       ...+.+.....++..+++..  ...+.+ 
T Consensus       234 ~~~~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l~~~~~~~~~~-------~~~~~s~~~q~~~~~~l~~~~~~~~~~~~  305 (416)
T PRK09440        234 TPLWNPNIILCMSLSKL-GLPGVRCGIVIADEEIIEALSNMNGI-------ISLAPGRLGPAIAAEMIESGDLLRLSETV  305 (416)
T ss_pred             CccccCCeEEEeccccc-CCCcceEEEEeCCHHHHHHHHHHHHH-------hccCCCcHHHHHHHHHhccchHHHHHHHH
Confidence            11  1234778899995 5444  99999887766655443321       11234444444444444321  111222 


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCC--eEEeCCCCCcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741          318 DHKRITALHDRLLNGIKEKLDG--VVVNGSMERRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       318 ~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      ..+.++++.+.+.+.|.+.+++  +.+..+ +.  ..++.+.++.  .+..++...+  +||.+.+|..+.+.       
T Consensus       306 ~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p-~g--g~fiw~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~-------  375 (416)
T PRK09440        306 IRPFYRQKVQLAIALLRRYLPDEPCLIHKP-EG--AIFLWLWFKDLPITTEELYQRLKARGVLVVPGHYFFPG-------  375 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCeEEecC-CC--ceEEEEECCCCCCCHHHHHHHHHHCCEEEechHhhCCC-------
Confidence            4555667777777777763333  443332 21  3344445543  3455666655  69999998765321       


Q ss_pred             HHHcCCCcc--CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          392 LRALGVDED--MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       392 l~~~g~~~~--~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                           ....  ...+++||+++.  +.++++.++++|++++++..+.
T Consensus       376 -----~~~~~~~~~~~iRis~~~--~~~~l~~~i~~l~~~~~~~~~~  415 (416)
T PRK09440        376 -----LDEDWPHAHQCIRMNYVQ--DDEEIEKGIAILAEEVEKAYAE  415 (416)
T ss_pred             -----CccccCCcCceEEEEecC--CHHHHHHHHHHHHHHHHHHhhc
Confidence                 0000  013689999984  6899999999999999876543

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.91  E-value=1e-22  Score=198.93  Aligned_cols=308  Identities=18%  Similarity=0.169  Sum_probs=215.3

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G  170 (457)
                      .+.|++...+....+++.|+++-|.+.  ++++++|..|+..++.+++    ++|++|++....|......++. +...|
T Consensus        46 ~~~Y~R~gnPt~~~le~~la~Le~g~~--a~~~~SGmaAi~~~l~~ll----~~Gd~iv~~~~~Y~~t~~~~~~~l~~~g  119 (386)
T PF01053_consen   46 GYIYSRYGNPTVRALEQRLAALEGGED--ALLFSSGMAAISAALLALL----KPGDHIVASDDLYGGTYRLLEELLPRFG  119 (386)
T ss_dssp             SCSBTTTC-HHHHHHHHHHHHHHT-SE--EEEESSHHHHHHHHHHHHS-----TTBEEEEESSSSHHHHHHHHHCHHHTT
T ss_pred             CcceeccccccHHHHHHHHHHhhcccc--eeeccchHHHHHHHHHhhc----ccCCceEecCCccCcchhhhhhhhcccC
Confidence            356677777899999999999999854  8889999999999999998    8999999999999998887774 56779


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      +++.+++..     |+++++++++++|++|+++.+.||+..+.|+++|+++||++| +++++|.+.+.+.. .+.-.+|+
T Consensus       120 v~v~~~d~~-----d~~~l~~~l~~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-~~pL~~Ga  193 (386)
T PF01053_consen  120 VEVTFVDPT-----DLEALEAALRPNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-QNPLELGA  193 (386)
T ss_dssp             SEEEEESTT-----SHHHHHHHHCTTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-C-GGGGT-
T ss_pred             cEEEEeCch-----hHHHHHhhccccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-eccCcCCc
Confidence            999999875     899999999999999999999999999999999999999998 99999999987632 34445689


Q ss_pred             cEEEeccccccCCCC---ceEEEEec--CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRR--RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~--~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      |+++.|.+|++++.+   .|++++++  +...+++.....       ...+.++..+..+..    -...+.-++++..+
T Consensus       194 Divv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~-------~G~~~~p~da~ll~r----gl~Tl~~R~~~~~~  262 (386)
T PF01053_consen  194 DIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRL-------LGATLSPFDAWLLLR----GLRTLPLRMERQNE  262 (386)
T ss_dssp             SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHH-------HT-B--HHHHHHHHH----HHTTHHHHHHHHHH
T ss_pred             eEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhh-------cCccchHHHHHHHhc----CCCcHHHHHHHHHH
Confidence            999999999776544   68888765  233333322211       111333333332222    22357888899999


Q ss_pred             HHHHHHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----
Q 040741          325 LHDRLLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----  382 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----  382 (457)
                      ++.++.+.|++ .|.+. |.-+  +.           ...++++.|.+++.  ....+...|+  .++.+-|...+    
T Consensus       263 nA~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SLi~~  341 (386)
T PF01053_consen  263 NAEALAEFLEE-HPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGEEAARRFLDALKLFSIAPSLGGVESLISH  341 (386)
T ss_dssp             HHHHHHHHHHT-STTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHHHHHHHHHHH-SSSEESSS-SSSS-EEEE
T ss_pred             HHHHHHHHHHh-CCCCCeEEEcccccccceeeeeecccccCceeEEEeccchhhhHhHHhhhhhHhhhhhcCCccccccc
Confidence            99999999999 78774 3322  11           13457777887653  2345666664  34445555422    


Q ss_pred             CCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          383 SASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       383 ~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +....+    .-..+..|+++    +.||++++.    ||+|.+++.|+++++
T Consensus       342 p~~~~h~~~~~e~~~~~Gi~~----~liRlSvGl----Ed~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  342 PASTSHRSLSPEERAEAGISD----GLIRLSVGL----EDPDDLIADLEQALE  386 (386)
T ss_dssp             TTCTTTTTSCHHHHHHTTS-T----TEEEEE--S----S-HHHHHHHHHHHHH
T ss_pred             ccchhhccCChhhhhccCCCC----CeeEEEecc----CCHHHHHHHHHHhcC
Confidence            222211    22356778776    899999997    889999999998875

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.91  E-value=3.1e-22  Score=197.82  Aligned_cols=334  Identities=17%  Similarity=0.136  Sum_probs=218.6

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++.++++.+.+.+.+-        ++.  .+..+++++.+++++|.+  ++++++|||.|+.+++.++..   ++|+
T Consensus         8 ~~~~~~~~~~~~~l~~~~~--------~g~--~~~~~~~e~~la~~~g~~--~~v~~~sgt~al~~~l~~~~~---~~Gd   72 (375)
T PRK11706          8 PVVGTELDYIQQAMSSGKL--------CGD--GGFTRRCQQWLEQRFGSA--KVLLTPSCTAALEMAALLLDI---QPGD   72 (375)
T ss_pred             CCCHHHHHHHHHHHHcCCc--------cCC--CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHhCC---CCCC
Confidence            3456667888887764321        111  156788999999999975  599999999999998876632   7899


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK  226 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~  226 (457)
                      +||++.++|+++..++...   |+++++++++.+ +.+|++++++++++++++|++++   ++|...++++|.++|+++|
T Consensus        73 ~Viv~~~t~~~~~~~~~~~---G~~~v~~d~d~~~~~~d~~~le~~i~~~tk~i~~~~---~~G~~~~~~~i~~la~~~~  146 (375)
T PRK11706         73 EVIMPSYTFVSTANAFVLR---GAKIVFVDIRPDTMNIDETLIEAAITPKTRAIVPVH---YAGVACEMDTIMALAKKHN  146 (375)
T ss_pred             EEEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhcCCCCeEEEEeC---CCCCccCHHHHHHHHHHcC
Confidence            9999999999999887766   999999999865 47899999999999999888764   5899999999999999999


Q ss_pred             CcEEEehhhhcCCCcccCCCC--cccEEEeccc--cccCCCCceEEEEec-CCCccccccccCCccccc-----------
Q 040741          227 IPFHTDAAQALGKIPVDVEKW--NVSLMSLSGH--KIYGPKGVGALYMRR-RPRIRVEPLINGGGQERG-----------  290 (457)
Q Consensus       227 v~li~D~a~~~g~~~~~~~~~--~~Di~~~s~~--K~~g~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~-----------  290 (457)
                      +++|+|++|++|... +....  ..|+-++|+|  |.+++...|++++++ +..+++......+.....           
T Consensus       147 i~vIeD~a~a~g~~~-~~~~~g~~~~~~~~Sf~~~K~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  225 (375)
T PRK11706        147 LFVVEDAAQGVMSTY-KGRALGTIGHIGCFSFHETKNYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTW  225 (375)
T ss_pred             CEEEEECcccccccc-CCeeeecCcCEEEEeCCCCccccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCccee
Confidence            999999999988642 11111  2477777777  977654235555543 444444444332210000           


Q ss_pred             cccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCC---eEEeCCCCCc--ccceEEEEEc-cccc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDG---VVVNGSMERR--YIGNLNLSFA-YVEG  363 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~--~~~~~~~~~~-~~~~  363 (457)
                      ...|.....  ..+.+++-..+ +.+++..++.+++.+++.+.|.+ +++   +.+...+...  ....+.+.+. ..+.
T Consensus       226 ~~~g~~~~~--~~~~aa~~~~ql~~l~~~~~~R~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  302 (375)
T PRK11706        226 VDIGSSYLP--SELQAAYLWAQLEAADRINQRRLALWQRYYDALAP-LAEAGRIELPSIPDDCKHNAHMFYIKLRDLEDR  302 (375)
T ss_pred             eecccccCc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCeeecCCCCCCCceeeEEEEEEECCcCCH
Confidence            011121111  11122222221 24677788888888999999887 652   4433212111  1122223332 2345


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcC-------CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG-------VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g-------~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .++...|  +||.++...  .+....|  ..+.++       ..+....+.|.+.+....+.+|++++++.|++++
T Consensus       303 ~~l~~~L~~~gI~~~~~~--~p~~~~~--~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        303 SALINFLKEAGIMAVFHY--IPLHSSP--AGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             HHHHHHHHHCCCCccccC--CccCcch--hhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence            6777777  577765432  2222222  122221       1223456789999998899999999999999864

>PRK07049 methionine gamma-lyase; Validated

Probab=99.91  E-value=1.2e-22  Score=202.77  Aligned_cols=306  Identities=15%  Similarity=0.112  Sum_probs=213.7

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++..++....+++.+|++.|.+  ++++++||+.|+.+++.+++    ++||+|++..+.|..+...+. .++..|+++
T Consensus        77 y~R~~~Pt~~~Le~~lA~leg~~--~~iv~~sG~~Ai~~~l~al~----~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi~~  150 (427)
T PRK07049         77 YSRFNHPNSEIVEDRLAVYEGAE--SAALFSSGMSAIATTLLAFV----RPGDVILHSQPLYGGTETLLAKTFRNFGVGA  150 (427)
T ss_pred             ccCCCCcCHHHHHHHHHHHhCCC--cEEEEccHHHHHHHHHHHHh----CCCCEEEEcCCCcccHHHHHHHHHHhcCcEE
Confidence            34444567789999999999965  48999999999999999998    899999999999999877643 345669887


Q ss_pred             EEEeCCCCCCCCHHHHHHhcC-----CCceEEEEeccccccccccChHHHHHHHHh------cCCcEEEehhhhcCCCcc
Q 040741          174 TYLPVGADGIVNLDELRAAIR-----PDTGLISVMAVNNEIGVIQPMEEIGQICKE------FKIPFHTDAAQALGKIPV  242 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~-----~~t~li~i~~~~~~~G~~~~l~~i~~l~~~------~~v~li~D~a~~~g~~~~  242 (457)
                      +.++..    .|++++++++.     +++++|++++++||+|.+.++++|.+++++      +++++++|+++...... 
T Consensus       151 v~~~~~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~~-  225 (427)
T PRK07049        151 VGFADG----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVFQ-  225 (427)
T ss_pred             EEEeCC----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCccccccC-
Confidence            666521    46777776663     578999999999999999999999999988      89999999997643221 


Q ss_pred             cCCCCcccEEEeccccccC-CCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHH
Q 040741          243 DVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDH  319 (457)
Q Consensus       243 ~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~  319 (457)
                      .....+.|+++.|++|.+| ..|  +|+++.+++..+++......       ..++.++.....+...++    .+..++
T Consensus       226 ~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~-------~g~~ls~~~a~l~~r~L~----tl~~R~  294 (427)
T PRK07049        226 KPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSA-------IGTQLDPHSCWMLGRSLE----TLVLRM  294 (427)
T ss_pred             CccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHcCCC----hHHHHH
Confidence            1224468999999999666 344  79988776655555433221       112455555554444433    456667


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEE-eCC----CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccC
Q 040741          320 KRITALHDRLLNGIKEKLDGVVV-NGS----ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGS  379 (457)
Q Consensus       320 ~~~~~~~~~l~~~l~~~~~~~~~-~~~----~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~  379 (457)
                      ++..+++..+.+.|++ .|++.- +-+    +.           ...++++.|.+.+.  ....++..|+  .++++-|.
T Consensus       295 ~~~~~~a~~la~~L~~-~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~~~~~~f~~~l~l~~~~~slG~  373 (427)
T PRK07049        295 ERANRNARAVAEFLRD-HPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQAAAFRFLNALQIFKLAVSLGG  373 (427)
T ss_pred             HHHHHHHHHHHHHHHh-CCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCHHHHHHHHHcCcccEEcccCCC
Confidence            7778899999999998 777633 211    11           13467777887531  1235556653  45555565


Q ss_pred             ccCC----CCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          380 ACTS----ASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       380 ~~~~----~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ..+.    ..+.+    .-.....|+.+    +.|||+++.    ||+|.+++.|+++++
T Consensus       374 ~~sli~~~~~~~h~~~~~~~~~~~gi~~----~liR~svGl----E~~~dl~~dl~~al~  425 (427)
T PRK07049        374 TESLASHPASMTHSGVPADVRERIGVLE----STIRLSIGI----EHPDDLIADLAQALD  425 (427)
T ss_pred             CCceeeCCCccccccCCHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHHh
Confidence            4332    22111    11233566665    899999997    788889999998886

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.91  E-value=2.2e-22  Score=199.42  Aligned_cols=304  Identities=17%  Similarity=0.166  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++.+++++|.+  ++++|+|||+|+.+++.++.    ++||.| ++.+.|.++...+...   |++++.++++.
T Consensus        53 ~g~~~Leeaia~~~g~~--~vv~t~~Gt~Al~la~~al~----~pGD~V-~~~~~f~~~~~~i~~~---Ga~pv~v~i~~  122 (431)
T cd00617          53 KSFYDLEDAVQDLFGFK--HIIPTHQGRGAENILFSILL----KPGRTV-PSNMHFDTTRGHIEAN---GAVPVDLVIDE  122 (431)
T ss_pred             CCHHHHHHHHHHHHCCC--eEEEcCCHHHHHHHHHHHhC----CCCCEE-ccCCcccchHHHHHhC---CCEeEEEeccc
Confidence            45679999999999986  49999999999999999998    899987 5777777777766666   99999999862


Q ss_pred             ----------CCCCCHHHHHHhcCCC----ceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhcCC---
Q 040741          181 ----------DGIVNLDELRAAIRPD----TGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQALGK---  239 (457)
Q Consensus       181 ----------~~~~d~~~le~~i~~~----t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---  239 (457)
                                .|.+|+++|+++|+++    +++|+++.++|++ |.+++   +++|.++|++||++||.|+|+..+.   
T Consensus       123 ~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~  202 (431)
T cd00617         123 AHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYF  202 (431)
T ss_pred             ccccccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhh
Confidence                      3559999999999876    7899999999997 88886   5678999999999999999987531   


Q ss_pred             --------CcccCCC------CcccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHHH
Q 040741          240 --------IPVDVEK------WNVSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVG  303 (457)
Q Consensus       240 --------~~~~~~~------~~~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a  303 (457)
                              ....+.+      ...|.+++|++| ..++.| |+++++++ +.++++....  ..+....+|..+...+.+
T Consensus       203 i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~~~~~~~~~--~~~~~~~~gG~~~r~~~A  279 (431)
T cd00617         203 IKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELYEEARQRVV--LYEGFVTYGGMAGRDMEA  279 (431)
T ss_pred             hhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHHHHHHHhcc--ccCCccccccccHHHHHH
Confidence                    1111111      136899999999 556665 89999874 5555543211  011112334555556655


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc---------ccchHHHhcc---c
Q 040741          304 FGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY---------VEGESLLMGL---K  371 (457)
Q Consensus       304 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l---~  371 (457)
                      +..+++...+ .+. .++..+.++++.+.|.+ . |+.+..+. .  ...+.+..+.         .++.++...|   .
T Consensus       280 ~A~gL~e~~~-~~~-l~~~~~~r~~l~~~L~~-~-G~~v~~P~-G--gh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~  352 (431)
T cd00617         280 LAQGLREAVE-EDY-LRHRVEQVRYLGDRLDE-A-GVPIVEPA-G--GHAVFIDAREFLPHIPQEQFPAQALAAELYLEA  352 (431)
T ss_pred             HHHHHHhccc-HHH-HHHHHHHHHHHHHHHHH-C-CCCccCCC-c--ceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHc
Confidence            5445543211 122 33333355888899988 3 77666532 2  2333344331         1255666555   4


Q ss_pred             CeEecc-cCccCCCCCChhHHHHHcCCCccC------CCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhcC
Q 040741          372 EVAVSS-GSACTSASLEPSYVLRALGVDEDM------AHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       372 ~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~------~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~~~~  437 (457)
                      ||.+.. |....             |.++.-      .-..+|+++.+ .-|.+++|++++++.+..++-....
T Consensus       353 gV~~~~~g~~~~-------------~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~~~  413 (431)
T cd00617         353 GVRAVELGIFSA-------------GRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYERREDIR  413 (431)
T ss_pred             CeeEEeecceec-------------ccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHhhHhhCC
Confidence            676433 43211             111111      23789999987 4589999999999999998754433

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.91  E-value=9.9e-22  Score=195.73  Aligned_cols=270  Identities=16%  Similarity=0.191  Sum_probs=187.4

Q ss_pred             ceecccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           47 ITLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        47 ~~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ...+.+.+..+.+|+++.+.+++++++++++.+++... ++... ....+. ....+..+++.+++++|+++  .+++++
T Consensus        71 ~~lr~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~y-~~l~~-~l~~g~-~g~r~~~le~~lA~l~gae~--alvv~s  145 (454)
T TIGR00474        71 PSLRRVINATGVVLHTNLGRAPLAEEAIEAVTDAARGY-SNLEY-DLETGK-RGSRYSHVEGLLCELTGAED--ALVVNN  145 (454)
T ss_pred             ccccceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhcc-cchhc-cccccc-cchHHHHHHHHHHHHhCCCc--EEEECC
Confidence            44566777788899999999999999999999998753 33221 011111 12467889999999999976  677888


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchH---HHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEe
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVL---DSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~---~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      ++.|+.+++.+ +    .+|++||+++.+|..+.   .....+...|+++++++.+  +..|+++++++|+++|++|+++
T Consensus       146 g~aAi~l~l~~-l----~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~~~T~lv~~~  218 (454)
T TIGR00474       146 NAAAVLLALNT-L----AKGKEVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAITENTALLLKV  218 (454)
T ss_pred             HHHHHHHHHHH-h----CCcCEEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcCcCCEEEEEE
Confidence            99999888854 4    68999999998864321   1123345669999998764  3358999999999999999999


Q ss_pred             ccccc--cc--cccChHHHHHHHHhcCCcEEEehhhhc---------CCCcc--cCCCCcccEEEeccccccCCCCceEE
Q 040741          204 AVNNE--IG--VIQPMEEIGQICKEFKIPFHTDAAQAL---------GKIPV--DVEKWNVSLMSLSGHKIYGPKGVGAL  268 (457)
Q Consensus       204 ~~~~~--~G--~~~~l~~i~~l~~~~~v~li~D~a~~~---------g~~~~--~~~~~~~Di~~~s~~K~~g~~G~G~l  268 (457)
                      +++|+  .|  .+.|+++|+++||+||+++++|.+.+.         +..|.  +..+.++|++++|++|++|++..|++
T Consensus       219 h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i  298 (454)
T TIGR00474       219 HTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGII  298 (454)
T ss_pred             ccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEE
Confidence            99997  36  578999999999999999999986331         22222  33456899999999996653347999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHhh
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK------------EMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~------------~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      +++++.++++.....    .+.+   ...-..++++.+++.....            .+....++..+++..+.+.|++
T Consensus       299 ~g~~~~i~~l~~~~l----~r~l---r~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~  370 (454)
T TIGR00474       299 VGKKELIERLKKNPL----TRAL---RVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKA  370 (454)
T ss_pred             EECHHHHHhhhhchh----HHHH---hhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHh
Confidence            998876554432111    1111   1122233344444433221            1334455666777788887776

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.91  E-value=4.7e-22  Score=211.90  Aligned_cols=329  Identities=13%  Similarity=0.111  Sum_probs=238.9

Q ss_pred             CCcEEecCCCCCC----CCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           56 GRPLYLDMQATTP----VDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        56 ~~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      .+.+|+++.+.++    .|+.+++++.+...-+-. .|.  ......+..+...+++.++++++|++++++.++.++|.+
T Consensus       100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~~~TaytPY--qaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d~aTAa  177 (993)
T PLN02414        100 KNKVFKSYIGMGYYNTHVPPVILRNILENPGWYTQYTPY--QAEIAQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAA  177 (993)
T ss_pred             cCCccccccCCCCCCccCCHHHHHHHHhChHHHhhcCCC--chHHHHHHHHHHHHHHHHHHHHhCCChhhEeecCChHHH
Confidence            4556888888887    888888888887542111 122  122234455788999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      .+.++++... .++++++|++++..|+++...++. ++..|++++.++.+..   |      ...+.+..+ +.+..|.+
T Consensus       178 aea~~~a~~~-~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~~~v~~v-lvq~P~~~  246 (993)
T PLN02414        178 AEAMAMCNNI-LKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSSGDVCGV-LVQYPATD  246 (993)
T ss_pred             HHHHHHHHhc-ccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------cccCceEEE-EEecCCCC
Confidence            9998887753 112458899999999999988764 4667999999987531   1      112222222 34444559


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-cCCCCcccEEEeccccccCCCC-----ceEEEEecCCCcccccccc
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-DVEKWNVSLMSLSGHKIYGPKG-----VGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-~~~~~~~Di~~~s~~K~~g~~G-----~G~l~~~~~~~~~~~~~~~  283 (457)
                      |.+.|+++|+++||++|+++++ +++.++...+ ++.++|+|+++++.|||++|.|     .|+++++++....+...+.
T Consensus       247 G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~PgriV  325 (993)
T PLN02414        247 GEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRII  325 (993)
T ss_pred             eEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCccc
Confidence            9999999999999999999999 8888777766 4778899999999999864443     8999999976544433344


Q ss_pred             CCc-----------------cccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          284 GGG-----------------QERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       284 ~~~-----------------~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                      |++                 +..++..+|.|+....++.+++..+      ..+++++.+++.+++.++.+.|.+  +++
T Consensus       326 G~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~--~G~  403 (993)
T PLN02414        326 GVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKK--LGF  403 (993)
T ss_pred             CcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhh--cCC
Confidence            431                 1223457799987777766666433      146889999999999999999987  577


Q ss_pred             EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .+..+   .....+.+.++  +..++...|  +||.++..                       ..+.+|+|+..++|++|
T Consensus       404 ~~~~~---~~f~~vt~~~~--~~~~v~~~L~~~gI~l~~~-----------------------~~~~lrvs~~e~~T~ed  455 (993)
T PLN02414        404 QVQSL---PFFDTVKVKCS--DADAIADAAAKVGINLRVV-----------------------DANTVTVSFDETTTLED  455 (993)
T ss_pred             ccCCC---CCcCeEEEecC--CHHHHHHHHHHCCCeeEEe-----------------------cCCeEEEEeeccCCHHH
Confidence            77654   22445555543  346666666  56655321                       02679999999999999


Q ss_pred             HHHHHHHHHH
Q 040741          419 VDRAIELTVK  428 (457)
Q Consensus       419 id~~~~~l~~  428 (457)
                      ||.++++|..
T Consensus       456 Id~L~~~l~~  465 (993)
T PLN02414        456 VDKLFKVFAG  465 (993)
T ss_pred             HHHHHHHHcc
Confidence            9999999963

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.91  E-value=6e-22  Score=198.17  Aligned_cols=341  Identities=15%  Similarity=0.167  Sum_probs=221.7

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh-----h
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF-----Y  142 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~-----~  142 (457)
                      .++++.++++.+.+.+.+       ...|    +...++++.+++++|.+  ++++++|||+|+.+++.++...     .
T Consensus        41 ~~~~~~~~a~~~~~~~~~-------~~~G----~~~~~fe~~lA~~~g~~--~~v~~~sGt~al~~aL~al~~~~~~~~~  107 (438)
T PRK15407         41 VIDAKELQNLVDASLDFW-------LTTG----RFNDAFEKKLAEFLGVR--YALLVNSGSSANLLAFSALTSPKLGDRA  107 (438)
T ss_pred             CCCHHHHHHHHHHHHhCc-------ccCC----hhHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHHHhhccccccC
Confidence            455555666666554311       1112    45778999999999985  4999999999999999876310     1


Q ss_pred             cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHH
Q 040741          143 KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQI  221 (457)
Q Consensus       143 ~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l  221 (457)
                      .++|++||++.++|.++..++...   |++++.++++ .++.+|++++++++++++++|+++++   .|...++++|.++
T Consensus       108 ~~pGd~VIv~~~t~~a~~~~v~~~---G~~pv~vdvd~~~~~id~~~le~~i~~~tkaVi~~~~---~G~p~dl~~I~~l  181 (438)
T PRK15407        108 LKPGDEVITVAAGFPTTVNPIIQN---GLVPVFVDVELPTYNIDASLLEAAVSPKTKAIMIAHT---LGNPFDLAAVKAF  181 (438)
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHHcCcCCeEEEEeCC---CCChhhHHHHHHH
Confidence            178999999999999998887766   9999999987 46779999999999999999999875   7888999999999


Q ss_pred             HHhcCCcEEEehhhhcCCCccc--CCCCcccEEEeccc--c-ccCCCCceEEEEecCCCccccccccCCccc--------
Q 040741          222 CKEFKIPFHTDAAQALGKIPVD--VEKWNVSLMSLSGH--K-IYGPKGVGALYMRRRPRIRVEPLINGGGQE--------  288 (457)
Q Consensus       222 ~~~~~v~li~D~a~~~g~~~~~--~~~~~~Di~~~s~~--K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~--------  288 (457)
                      |+++|++||+|++|++|+..-+  ...++ |+.++||+  | +....| |+++++++.+.+....+..++..        
T Consensus       182 a~~~gi~vIeDaa~a~G~~~~g~~~G~~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~  259 (438)
T PRK15407        182 CDKHNLWLIEDNCDALGSTYDGRMTGTFG-DIATLSFYPAHHITMGEG-GAVFTNDPLLKKIIESFRDWGRDCWCAPGCD  259 (438)
T ss_pred             HHHCCCEEEEECccchhhhcCCeeeeccC-ceEEEeCCCCCCccccCc-eEEEECCHHHHHHHHHHHHhCcccccccccc
Confidence            9999999999999999977543  22333 77777775  5 433445 99998876443322222222110        


Q ss_pred             -------------------cccccCCCChh-HHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEeCCC
Q 040741          289 -------------------RGIRSGTLPTP-LIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDG-VVVNGSM  346 (457)
Q Consensus       289 -------------------~~~~~~t~~~~-~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~  346 (457)
                                         ..+........ -+.-+.+|+...+ +.++++.++.+++++++.+.|.+ +++ +.+...+
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l~~~~~~R~~~a~~y~~~L~~-~~~~~~~~~~~  338 (438)
T PRK15407        260 NTCGKRFGWQLGELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKLPGFIEARKANFAYLKEGLAS-LEDFLILPEAT  338 (438)
T ss_pred             cccccccccccccccccccccccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCcCC
Confidence                               00000000000 0112223333322 35788888999999999999988 775 3333222


Q ss_pred             CCcccceEEEEE--cc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHH------HcCCCccCCCCeEEEecCCC
Q 040741          347 ERRYIGNLNLSF--AY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLR------ALGVDEDMAHTSIRFGIGRF  413 (457)
Q Consensus       347 ~~~~~~~~~~~~--~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~------~~g~~~~~~~~~iRi~~~~~  413 (457)
                      ....+.+..+.+  ..   .+.+++...|  +||....... .+....|-+.-.      .+...+....+.|-+.+...
T Consensus       339 ~~~~~~~~~~~i~~~~~~~~~Rd~l~~~L~~~GI~~~~~~~-~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~  417 (438)
T PRK15407        339 PNSDPSWFGFPITVKEDAGFTRVELVKYLEENKIGTRLLFA-GNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPG  417 (438)
T ss_pred             CCCeeEEEEEEEEECCcCCCCHHHHHHHHHHCCCCccccCC-CccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCC
Confidence            222233323322  21   2356777777  5765543221 011122221110      11112223467888888888


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q 040741          414 TTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       414 ~t~edid~~~~~l~~~~~  431 (457)
                      .+++|+++++++++++++
T Consensus       418 l~~~~v~~i~~~i~~~~~  435 (438)
T PRK15407        418 LTEEMLDYVIEKIEEFFG  435 (438)
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            899999999999999875

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=99.91  E-value=7.8e-22  Score=198.18  Aligned_cols=330  Identities=15%  Similarity=0.142  Sum_probs=215.9

Q ss_pred             CcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.      +..+|++.+++.+.+......+.      +....+...++++.++++++.+.++++|++||++|
T Consensus        35 G~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea  108 (413)
T cd00610          35 GNRYLDFLSGIGVLNLGHNHPEVVEALKEQLAKLTHFSL------GFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEA  108 (413)
T ss_pred             CCEEEEcCccHHhhccCCCCHHHHHHHHHHHHhCcCccC------cccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHH
Confidence            3457776552      13789999999999864211111      11123678899999999999777789999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCC-CcchHHHHHHHHhc---------CcEEEEEeCCCC------CCCCHHHHHHhcC
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTE-HKCVLDSCRHLQQE---------GFEITYLPVGAD------GIVNLDELRAAIR  194 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~-h~~~~~~~~~~~~~---------G~~v~~v~~~~~------~~~d~~~le~~i~  194 (457)
                      +..+++.+..+  .++++|++.+.. |.+...........         +.++..++.+..      ...|+++++++++
T Consensus       109 ~~~al~~~~~~--~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~  186 (413)
T cd00610         109 VEAALKLARAY--TGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALE  186 (413)
T ss_pred             HHHHHHHHHHH--cCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHh
Confidence            99999987633  456777776654 54444443332110         123555655421      2348899999987


Q ss_pred             C---CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcC-CC----cccCCCCcccEEEeccccccCC
Q 040741          195 P---DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALG-KI----PVDVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       195 ~---~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g-~~----~~~~~~~~~Di~~~s~~K~~g~  262 (457)
                      +   ++++|+++.+++++|.+.|    +++|.++|++||+++|+|++|+.. ..    ..+.....+|++  +++|.+|+
T Consensus       187 ~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~  264 (413)
T cd00610         187 EHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGG  264 (413)
T ss_pred             cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccC
Confidence            6   5788889999888999887    999999999999999999999732 11    111122245765  45596553


Q ss_pred             -CCceEEEEecCCCccc--cccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          263 -KGVGALYMRRRPRIRV--EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       263 -~G~G~l~~~~~~~~~~--~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                       .++|+++++++..+.+  .....       ....+.++..++++.++++.+..  +...++.+++.+++++.|+. +..
T Consensus       265 g~~~g~~~~~~~~~~~~~~~~~~~-------~~t~~~~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~-~~~  334 (413)
T cd00610         265 GLPLGAVLGREEIMDAFPAGPGLH-------GGTFGGNPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRE-LAE  334 (413)
T ss_pred             ccccEEEEEcHHHHHhhccCCCCC-------CCCCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HHh
Confidence             3489999887655554  11111       11224455666677777877765  46677888888888888776 321


Q ss_pred             e-EEeCCCCCcccceEEEEEccc---------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          340 V-VVNGSMERRYIGNLNLSFAYV---------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       340 ~-~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      . .+.... ...+.++.+.+...         ....+...+  +||.+.++.                       .+.+|
T Consensus       335 ~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~~~~-----------------------~~~lR  390 (413)
T cd00610         335 KHPLVGDV-RGRGLMIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSG-----------------------GNVIR  390 (413)
T ss_pred             hCCcEEEe-ecCceEEEEEEecCCCcCCcchHHHHHHHHHHHHCCeEEeecC-----------------------CCEEE
Confidence            0 111111 11245555555422         223455444  577776542                       26899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~~  430 (457)
                      |+++..++++||+++++++++++
T Consensus       391 ~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         391 LLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             EECCCcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.91  E-value=5.4e-22  Score=207.42  Aligned_cols=312  Identities=12%  Similarity=0.129  Sum_probs=209.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeC-ChHHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhcC
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTS-GATESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQEG  170 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~-g~T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~G  170 (457)
                      ..+..+.+.++++++++++|.+.  +.+.+ +|+.|...+++++..++.    ..+++|+++...|.++...+..   .|
T Consensus       538 sQG~lq~i~elq~~l~eLtGmd~--~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpasa~~---~G  612 (954)
T PRK12566        538 AEGYRAMIDELEAWLCAITGFDA--ICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPASAQM---AG  612 (954)
T ss_pred             hcCHHHHHHHHHHHHHHHHCCCe--EeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHHHHH---CC
Confidence            34455899999999999999976  56666 577777788888775443    2357889999999888765444   49


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-CCC
Q 040741          171 FEITYLPVGADGIVNLDELRAAIR---PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-VEK  246 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~~~  246 (457)
                      ++++.++.+.+|.+|+++|+++++   ++++.|++.++++-.+...|+++|+++||++|+++++|+++..+...+. +.+
T Consensus       613 ieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~l~~Pg~  692 (954)
T PRK12566        613 MRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVGLARPAD  692 (954)
T ss_pred             CEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccCCCChhh
Confidence            999999999899999999999997   6777788888776554546699999999999999999999998777665 477


Q ss_pred             CcccEEEecccccc-CCCCceEEEEec-CCCccccccccCCcc----ccccccCCCC---hhHHHHHHHHHHHHHH-h--
Q 040741          247 WNVSLMSLSGHKIY-GPKGVGALYMRR-RPRIRVEPLINGGGQ----ERGIRSGTLP---TPLIVGFGSACEIAKK-E--  314 (457)
Q Consensus       247 ~~~Di~~~s~~K~~-g~~G~G~l~~~~-~~~~~~~~~~~~~~~----~~~~~~~t~~---~~~~~al~~al~~~~~-~--  314 (457)
                      +|+|++++++||+| +|.|.|..++.. ...+.+.+.+.++..    ..+-+.++.+   .....-+..|..++.. +  
T Consensus       693 ~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~lG~e  772 (954)
T PRK12566        693 IGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMMGPQ  772 (954)
T ss_pred             cCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHHCHH
Confidence            89999999999954 465555555554 333444444433210    0101122222   1121223334444433 3  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc------cccchHHHhcc--cCeEecccCccCCCCC
Q 040741          315 MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA------YVEGESLLMGL--KEVAVSSGSACTSASL  386 (457)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l--~~i~~~~g~~~~~~~~  386 (457)
                      +.+..+....+++|+.+.|.+ ..++.. .+.+..+..-..+.+.      +.+..++..+|  .||....-.       
T Consensus       773 Lk~aa~~ailnAnYla~rL~~-~~~v~~-~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~d~Gihapt~~-------  843 (954)
T PRK12566        773 LADASEVAILSANYLANQLGG-AFPVLY-RGRNERVAHECILDLRPLKAQTGISEEDVAKRLMDYGFHAPTMS-------  843 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHhHh-hCCCCc-CCCCCCeeeEEEEEccccccccCCCHHHHHHHHHHCCcEEeEEe-------
Confidence            344444446789999999977 444433 2222221222223322      23446677776  454432110       


Q ss_pred             ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       387 ~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                              +.     ..+.+||++..+++++|||+++++|+...++++
T Consensus       844 --------fP-----v~~~LmIepTE~eskeEIDrf~eAL~~I~~e~~  878 (954)
T PRK12566        844 --------FP-----VPGTLMVEPTESESKAELDRFVEAMLSIRAEIG  878 (954)
T ss_pred             --------ec-----cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHH
Confidence                    01     137999999999999999999999999998864

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.91  E-value=2.9e-21  Score=203.32  Aligned_cols=348  Identities=11%  Similarity=0.074  Sum_probs=229.2

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccc-hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHL-FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      .++..++.+-..+.+.+.+.....++.. .+..... ...+..+...++++++++++|.+. .-+..++|+.|...++++
T Consensus       488 ~fi~lGsctmk~na~v~~l~~s~~ef~t-~hPyqPe~~sqG~lq~i~elq~~l~eltGmd~-~Sl~p~aGA~gE~agL~a  565 (939)
T TIGR00461       488 SMIPLGSCTMKLNATAEMMPITWPEFSN-IHPFQPSNQVEGYQELIAQLEKWLCSITGFDA-ISLQPNSGAQGEYAGLRV  565 (939)
T ss_pred             cCCCCccCCCccCHHHHHHHhcchhhcC-cCCCCchHHhHHHHHHHHHHHHHHHHHHCCCC-cccCCchHHHHHHHHHHH
Confidence            4556666664334444444332222222 1211111 233455899999999999999984 355666677777667777


Q ss_pred             hhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEeccccccc
Q 040741          138 VMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---PDTGLISVMAVNNEIG  210 (457)
Q Consensus       138 ~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~~~~~~G  210 (457)
                      +..++.    .+++.|+++...|.++..++..+   |++++.++++.+|.+|+++|+++++   +++++|++++++| +|
T Consensus       566 iR~y~~~rge~~R~~vlip~saHgtnPasa~~~---G~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G  641 (939)
T TIGR00461       566 IRSYHESRGENHRNICLIPVSAHGTNPASAAMA---GMQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HG  641 (939)
T ss_pred             HHHHHHhcCCCCCCEEEEEccccCcCHHHHHHC---CCEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cc
Confidence            765432    23467999999999998776665   9999999999899999999999997   4899999999988 79


Q ss_pred             cccC-hHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEEEecccc-cc-----CCCCceEEEEecCCCccccccc
Q 040741          211 VIQP-MEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLMSLSGHK-IY-----GPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       211 ~~~~-l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~~~s~~K-~~-----g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      .+.| +++|+++||++|.++++|+|+..+.. .....++++|++++|.|| ++     |++|+|++++++.+...+....
T Consensus       642 ~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l~~Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~  721 (939)
T TIGR00461       642 VFEPTIQHACDIVHSFGGQVYLDGANMNAQVGLTSPGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHD  721 (939)
T ss_pred             eecccHHHHHHHHHHcCCEEEEEecChhhCCCCCCccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCc
Confidence            9987 99999999999999999999977443 334567899999999999 65     5677899999975332222110


Q ss_pred             cC-------CccccccccC--CCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCccc
Q 040741          283 NG-------GGQERGIRSG--TLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRYI  351 (457)
Q Consensus       283 ~~-------~~~~~~~~~~--t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~  351 (457)
                      .+       ..+..+..+.  +-+...+......+.. ..+++.+..+..-.+++|+.+.|.+ .  +.+.-+ ....+.
T Consensus       722 v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~-~--~~~l~~~~~~~~~  798 (939)
T TIGR00461       722 VVSMITGIGGSKSIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD-H--YPILFVGTLKHVA  798 (939)
T ss_pred             ccccccCCCCccccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc-c--CcccccCCCCcee
Confidence            00       0111011111  1111111111112222 2356888899999999999999987 3  233322 122233


Q ss_pred             ceEEEEEc------cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          352 GNLNLSFA------YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       352 ~~~~~~~~------~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                      .-+.+.++      ++...++..+|  +|+..-.-+               +.     ..+.+-|.+....+++|||+++
T Consensus       799 hEfv~~~~~~~~~~g~~~~dIakrL~d~G~hapt~~---------------~p-----v~g~lmiepTE~eskeelD~f~  858 (939)
T TIGR00461       799 HECILDLRPLKAKTGIEAIDVAKRLQDYGFHAPTLS---------------FP-----VPGTLMVEPTESESLEELDRFC  858 (939)
T ss_pred             EEEEEeccchhhhcCCCHHHHHHHHHhCCeeccccC---------------Cc-----cCCeEEEEeeccCCHHHHHHHH
Confidence            44455554      24556777777  455432100               00     1146667777778999999999


Q ss_pred             HHHHHHHHHHHh
Q 040741          424 ELTVKQVEKLRE  435 (457)
Q Consensus       424 ~~l~~~~~~~~~  435 (457)
                      ++|.+..+++++
T Consensus       859 ~al~~I~~e~~~  870 (939)
T TIGR00461       859 DAMIAIKEEINA  870 (939)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888765

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=99.91  E-value=5.1e-21  Score=190.52  Aligned_cols=328  Identities=14%  Similarity=0.180  Sum_probs=212.0

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +..+|++.+++.+.+.........      + ..+...+++++|+++++.+  .++|++||++
T Consensus        33 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~------~-~~~~~~~la~~L~~~~~~~--~~~f~~SGse  103 (397)
T TIGR03246        33 QGKEYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIGNG------Y-TNEPVLRLAKKLVDATFAD--KVFFCNSGAE  103 (397)
T ss_pred             CCCEEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccccCc------c-CCHHHHHHHHHHHhhCCCC--EEEEeCCcHH
Confidence            34457777552      256899999999998753211111      1 1256778999999998754  6999999999


Q ss_pred             HHHHHHHHhhhhhc-----CCCCEEEEcCCCCcchHHHHHHHHhc---------CcEEEEEeCCCCCCCCHHHHHHhcCC
Q 040741          130 SNNVSIKGVMHFYK-----DKKRHVITTQTEHKCVLDSCRHLQQE---------GFEITYLPVGADGIVNLDELRAAIRP  195 (457)
Q Consensus       130 a~~~al~~~~~~~~-----~~g~~vi~~~~~h~~~~~~~~~~~~~---------G~~v~~v~~~~~~~~d~~~le~~i~~  195 (457)
                      |++.+++....+..     ++.+.|......|.+...+.......         ...+..++.+     |++++++++.+
T Consensus       104 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  178 (397)
T TIGR03246       104 ANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISD  178 (397)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhcc
Confidence            99999998765431     23344555666788777655433110         0122333333     89999999988


Q ss_pred             CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCC--CCcccEEEeccccccC-CCCc
Q 040741          196 DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVE--KWNVSLMSLSGHKIYG-PKGV  265 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~--~~~~Di~~~s~~K~~g-~~G~  265 (457)
                      ++++|+++.++++.|.+.|    +++|.++|++||+++|+|++|. +|...  ....  ...+|+++  ++|.+| ...+
T Consensus       179 ~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t--~~K~lggG~pi  256 (397)
T TIGR03246       179 KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDILT--SAKALGGGFPI  256 (397)
T ss_pred             CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccchhhhhcCCCCCEEE--eehhhhCCcce
Confidence            8999999998888886643    8999999999999999999984 22111  1111  22467775  559543 2338


Q ss_pred             eEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEeC
Q 040741          266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG-VVVNG  344 (457)
Q Consensus       266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~  344 (457)
                      |+++++++..+.+.....+      ... ..++..+++..++++.+.+  +.+.++.+++.+++++.|++ +.. +.++.
T Consensus       257 gav~~~~~i~~~~~~~~~~------~t~-~~~p~~~aaa~a~l~~~~~--~~l~~~~~~~~~~l~~~L~~-l~~~~~~~~  326 (397)
T TIGR03246       257 GAMLTTTEIAAHLKVGTHG------TTY-GGNPLACAVAGKVLDLVNT--PELLAGVKQRHDLFVDGLEK-INARYNVFS  326 (397)
T ss_pred             eEEEEcHHHHHhccCCCcC------CCC-CCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhcCCCeE
Confidence            9999987765555432111      112 2455666667777877654  56778888888899888877 321 11111


Q ss_pred             CCCCcccceEEEEEcc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          345 SMERRYIGNLNLSFAY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      +. ...+.++.+.+..   .....+...+  +|+.+.+.                       +.+.|||+++..++++||
T Consensus       327 ~v-rg~G~~~~i~~~~~~~~~~~~~~~~l~~~Gv~~~~~-----------------------g~~~lR~~p~~~~t~~~i  382 (397)
T TIGR03246       327 EI-RGKGLLIGAVLTEAYQGKAKQFVNAAAEEGVIALIA-----------------------GPNVVRFAPSLVISDDDI  382 (397)
T ss_pred             ee-ecCceEEEEEEcCchhhHHHHHHHHHHHCCeEEeec-----------------------CCCEEEEeCCCCCCHHHH
Confidence            11 1123333344321   1233444444  56665421                       126899999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      |+++++|+++++++
T Consensus       383 ~~~~~~l~~~l~~~  396 (397)
T TIGR03246       383 DEGLARFERAIEQV  396 (397)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999988753

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK08354 putative aminotransferase; Provisional

Probab=99.90  E-value=4e-21  Score=185.23  Aligned_cols=295  Identities=12%  Similarity=0.014  Sum_probs=186.8

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      .+.+.|+.+-+...|+.+.+++.+.+......        .     ....++++++++.|.   ++++|+|+++++.+++
T Consensus         8 ~~~i~l~~~~np~~p~~~~~a~~~~~~~~~~y--------p-----~~~~l~~~ia~~~~~---~I~vt~G~~~al~~~~   71 (311)
T PRK08354          8 EGLIDFSASVNPYPPEWLDEMFERAKEISGRY--------T-----YYEWLEEEFSKLFGE---PIVITAGITEALYLIG   71 (311)
T ss_pred             cceeEecCCCCCCCCHHHHHHHHHHHHHhhcC--------C-----ChHHHHHHHHHHHCC---CEEECCCHHHHHHHHH
Confidence            35677777655555788888888775432111        1     134678999999983   5999999999998776


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC-
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP-  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~-  214 (457)
                      . +.    .+|+.|++..++|+.+...++..   |.+++.++      +|++.++++++ +++++++++|+||||.+.+ 
T Consensus        72 ~-~~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~-~~~~vi~~~P~NPTG~~~~~  136 (311)
T PRK08354         72 I-LA----LRDRKVIIPRHTYGEYERVARFF---AARIIKGP------NDPEKLEELVE-RNSVVFFCNPNNPDGKFYNF  136 (311)
T ss_pred             H-hh----CCCCeEEEeCCCcHHHHHHHHHc---CCEEeecC------CCHHHHHHhhc-CCCEEEEecCCCCCCCccCH
Confidence            4 33    47999999999999999888776   98887653      57899998887 5678889999999999998 


Q ss_pred             --hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccc
Q 040741          215 --MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       215 --l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                        +++|.++|+++|+++|+|+++.-....-........+++.|++|.||.+|  +|++++   ..+.+......      
T Consensus       137 ~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~~~~~vi~~~S~SK~~~l~GlRiG~~v~---~~~~l~~~~~~------  207 (311)
T PRK08354        137 KELKPLLDAVEDRNALLILDEAFIDFVKKPESPEGENIIKLRTFTKSYGLPGIRVGYVKG---FEEAFRSVRMP------  207 (311)
T ss_pred             HHHHHHHHHhhhcCcEEEEeCcchhccccccccCCCcEEEEeccHhhcCCccceeeeeee---hHHHHHHcCCC------
Confidence              56677788999999999999963221111111334688899999888666  899987   22333322211      


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL  370 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  370 (457)
                         ...+.....++...++...+.+.+.++...+..    +.+.+ ..   .. +++   .+++.+.+  .+..++...+
T Consensus       208 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~-~l---~~-~~~---~~~~~~~~--~~~~~~~~~l  270 (311)
T PRK08354        208 ---WSIGSTGYAFLEFLIEDDFEHLRKTMPLIWREK----ERFEK-AL---YV-KSD---ANFFIKDV--GDAEKFVEFL  270 (311)
T ss_pred             ---ccCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHH-hc---CC-CCC---CcEEEEEC--CCHHHHHHHH
Confidence               122333332222222210011122222222222    22322 11   11 111   33333332  2445566655


Q ss_pred             --cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          371 --KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       371 --~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                        +||.+.+|..+.              .     .++|||+++.   .++.+++++++++.
T Consensus       271 ~~~gv~v~~g~~f~--------------~-----~~~iRi~~~~---~~~~~~l~~al~~~  309 (311)
T PRK08354        271 KRNGILVRDCTSFG--------------L-----PGYIRFSVRD---REENEKLIRALREW  309 (311)
T ss_pred             HHCCeEEEecccCC--------------C-----CCeEEEEeCC---HHHHHHHHHHHHHh
Confidence              699999886431              1     2799999984   67788888777753

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.90  E-value=2.4e-22  Score=197.30  Aligned_cols=297  Identities=15%  Similarity=0.123  Sum_probs=195.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE
Q 040741           95 FGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI  173 (457)
Q Consensus        95 ~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v  173 (457)
                      |++...+...++++.++++.+   ++++++++|+.|+.+++.++.    ++||+|+++.+.|..+...++ .+...|+++
T Consensus        45 y~ry~~p~~~~Le~~lA~l~~---~~~v~~~sG~~Ai~~~l~all----~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~~v  117 (366)
T PRK07582         45 YGRASNPTWRALEAALGELEG---AEALVFPSGMAAITAVLRALL----RPGDTVVVPADGYYQVRALAREYLAPLGVTV  117 (366)
T ss_pred             eECCCCccHHHHHHHHHHHcC---CCEEEECCHHHHHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHHHhcCeEEE
Confidence            333444678899999999992   347778888999999998887    899999999988877766554 345569999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhh--cCCCcccCCCCcccE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA--LGKIPVDVEKWNVSL  251 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~--~g~~~~~~~~~~~Di  251 (457)
                      ++++.+.++     .   .+.+++++|++++++||+|.+.|+++|.++|+++|+++++|++++  .+..+++   .++|+
T Consensus       118 ~~v~~~~~~-----~---~~~~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~~~p~~---~g~Di  186 (366)
T PRK07582        118 REAPTAGMA-----E---AALAGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLGQRPLE---LGADL  186 (366)
T ss_pred             EEECCCChH-----H---HhccCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccccCchh---cCCcE
Confidence            999876321     1   334689999999999999999999999999999999999999985  3444443   46899


Q ss_pred             EEecccccc-CCCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIY-GPKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~-g~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|++ |+.|  +|+++.++ +..+++......       ...++++.....+...+    ..++.++++..+++.
T Consensus       187 vv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~~-------~g~~~~~~~a~l~~r~l----~tl~~R~~~~~~na~  255 (366)
T PRK07582        187 VVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRLL-------AGAIPGPFEAWLAHRSL----GTLGLRFARQCANAL  255 (366)
T ss_pred             EEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHHH-------hCCCCCHHHHHHHHhcc----ccHHHHHHHHHHHHH
Confidence            999999955 6666  58888753 333333322211       11233433333222222    235677788889999


Q ss_pred             HHHHHHhhcCCCeEEeC---CCCC-----------cccceEEEEEcccc-chHHHhccc--CeEecccCccCCCCCChhH
Q 040741          328 RLLNGIKEKLDGVVVNG---SMER-----------RYIGNLNLSFAYVE-GESLLMGLK--EVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~~~~~~~~~~~  390 (457)
                      .+.+.|++ .|.+.-+.   -+..           ..++++.|.+...+ ...++..++  .++++-|...+..  +.. 
T Consensus       256 ~la~~L~~-~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~--~~~-  331 (366)
T PRK07582        256 AVAELLAG-HPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELADAAAAERFVAASRLVVAATSFGGVHTSA--DRR-  331 (366)
T ss_pred             HHHHHHHh-CCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCCHHHHHHHHHhCCcceecccCCCccchh--hhH-
Confidence            99999998 78764322   1111           25778888885321 123344442  2334444433321  110 


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                        ...+  .....+.||++++..    +.+.+++.|+++++.
T Consensus       332 --~~~~--~~~~~~liR~svGlE----~~~dli~dl~~al~~  365 (366)
T PRK07582        332 --ARWG--DAVPEGFVRLSCGIE----DTDDLVADLERALDA  365 (366)
T ss_pred             --HHcC--CCCCCCeEEEEeccC----CHHHHHHHHHHHHhh
Confidence              1122  112348999999984    555555666655543

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.90  E-value=5.3e-23  Score=196.51  Aligned_cols=219  Identities=16%  Similarity=0.168  Sum_probs=173.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ..+.++++.+|+++|++. .+++++|+|.++.+++.+++    ++|++|+++++.|+++..++...   |.++++++.+.
T Consensus        59 g~i~~~~~~~A~~~ga~~-~~~~~~Gst~a~~~~l~al~----~~gd~Vlv~~~~h~s~~~~~~~~---g~~~~~v~~~~  130 (294)
T cd00615          59 GPIKEAQELAARAFGAKH-TFFLVNGTSSSNKAVILAVC----GPGDKILIDRNCHKSVINGLVLS---GAVPVYLKPER  130 (294)
T ss_pred             hHHHHHHHHHHHHhCCCC-EEEEcCcHHHHHHHHHHHcC----CCCCEEEEeCCchHHHHHHHHHC---CCEEEEecCcc
Confidence            578999999999999863 34459999999999999988    89999999999999999887765   99999998753


Q ss_pred             C------CCCCHHHHHHhcC--CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhc-----CCCcccCCCC
Q 040741          181 D------GIVNLDELRAAIR--PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL-----GKIPVDVEKW  247 (457)
Q Consensus       181 ~------~~~d~~~le~~i~--~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~-----g~~~~~~~~~  247 (457)
                      +      +.+|+++++++++  +++++++++++ |++|.+.|+++|+++|+++|+++++|+||+.     +..+......
T Consensus       131 ~~~~~~~~~i~~~~l~~~l~~~~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~  209 (294)
T cd00615         131 NPYYGIAGGIPPETFKKALIEHPDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMA  209 (294)
T ss_pred             CcccCcCCCCCHHHHHHHHHhCCCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhc
Confidence            2      3789999999996  46888989887 6799999999999999999999999999985     2334344456


Q ss_pred             cccEEEecccccc-CCCCceEEEEecCCCc--cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          248 NVSLMSLSGHKIY-GPKGVGALYMRRRPRI--RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       248 ~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      ++|+++.|+||.+ |+.+.|++.++++...  ++....      ..+..++++...++++..++.++..+-.+..++..+
T Consensus       210 ~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~~~~------~~~~ttsps~~~~asl~~a~~~~~~~g~~~~~~~~~  283 (294)
T cd00615         210 GADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVNEAL------NLHQSTSPSYLILASLDVARAMMALEGKELVEELIE  283 (294)
T ss_pred             CCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHHHHH------HHHCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            8999999999954 5666677777654222  111111      113456888899999999988876555667888888


Q ss_pred             HHHHHHHHHh
Q 040741          325 LHDRLLNGIK  334 (457)
Q Consensus       325 ~~~~l~~~l~  334 (457)
                      +.+++++.|.
T Consensus       284 ~~~~~r~~l~  293 (294)
T cd00615         284 LALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHh
Confidence            8888888775

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=99.90  E-value=1.9e-21  Score=194.47  Aligned_cols=327  Identities=17%  Similarity=0.226  Sum_probs=210.2

Q ss_pred             CcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.      +..+|++.+++.+.+.... ...+   .+   ..+...++++.++++++.+  .++|++|||+|
T Consensus        30 g~~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~~-~~~~---~~---~~~~~~~~~~~l~~~~~~~--~~~~~~SGs~A  100 (400)
T PTZ00125         30 GKKYYDFLSAYSAVNQGHCHPKILAALINQAQKLT-LTSR---AF---YNDVLGLAEKYITDLFGYD--KVLPMNSGAEA  100 (400)
T ss_pred             CCEEEEcccCHhhccCCcCCHHHHHHHHHHHHhcc-cccc---cc---cCHHHHHHHHHHHhCCCCC--EEEEeCCcHHH
Confidence            3457777543      1368999999999976431 1111   01   1257788999999998864  59999999999


Q ss_pred             HHHHHHHhhhhh-c-----CCCCEEEEcC-CCCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHHHHHhcC
Q 040741          131 NNVSIKGVMHFY-K-----DKKRHVITTQ-TEHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDELRAAIR  194 (457)
Q Consensus       131 ~~~al~~~~~~~-~-----~~g~~vi~~~-~~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~le~~i~  194 (457)
                      ++.+++.+..+. .     ..+++|++.+ ..|......+........         .+..++     ..|+++++++++
T Consensus       101 ~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~le~~l~  175 (400)
T PTZ00125        101 GETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVD-----YNDVEALEKLLQ  175 (400)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcCCcchhccCCCCCCCceEeC-----CCCHHHHHHHhC
Confidence            999999775321 0     1245565544 556666555543311000         111222     238999999996


Q ss_pred             -CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccC-C-
Q 040741          195 -PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYG-P-  262 (457)
Q Consensus       195 -~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g-~-  262 (457)
                       +++++|+++.++|++|.+.|    +++|.++|++||+++|+|++++ +|..    ..+.....+|++++|  |.++ + 
T Consensus       176 ~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~s--K~l~~g~  253 (400)
T PTZ00125        176 DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLG--KALSGGL  253 (400)
T ss_pred             CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhHHHhcCCCCCEEEEc--ccccCCC
Confidence             67899999999999999998    9999999999999999999986 4321    122223346877655  9544 3 


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG  339 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~  339 (457)
                      .++|+++++++..+.+.....+.      .. ..++....+..++++.+.++  ...++.+++.+++++.|.+.   .+.
T Consensus       254 ~~ig~v~~~~~~~~~~~~~~~~~------t~-~~~~~~~~aa~~~l~~i~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~  324 (400)
T PTZ00125        254 YPISAVLANDDVMLVIKPGEHGS------TY-GGNPLACAVAVEALEVLKEE--KLAENAQRLGEVFRDGLKELLKKSPW  324 (400)
T ss_pred             cCcEEEEEcHHHHhhccCCCCCC------CC-CcCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            25899999987666554322111      11 33455566666677776542  34455666677777776651   122


Q ss_pred             eEEeCCCCCcccceEEEEEcc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          340 VVVNGSMERRYIGNLNLSFAY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                      +....    ..+.++.+.++.   ....++...+  +||.+.++.                       .+.|||+++..+
T Consensus       325 ~~~~~----~~g~~~~v~~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~  377 (400)
T PTZ00125        325 VKEIR----GKGLLNAIVFDHSDGVNAWDLCLKLKENGLLAKPTH-----------------------DNIIRFAPPLVI  377 (400)
T ss_pred             eEEEe----cccEEEEEEEccCcchHHHHHHHHHHHCCeEEeecC-----------------------CCEEEEECCccC
Confidence            21111    123344444442   1234455555  577765431                       278999999889


Q ss_pred             CHHHHHHHHHHHHHHHHHHHh
Q 040741          415 TEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       415 t~edid~~~~~l~~~~~~~~~  435 (457)
                      +++++++++++|.++++++.+
T Consensus       378 ~~~~i~~~l~~l~~~l~~~~~  398 (400)
T PTZ00125        378 TKEQLDQALEIIKKVLKSFDS  398 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999987753

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.90  E-value=8.7e-22  Score=173.62  Aligned_cols=347  Identities=13%  Similarity=0.172  Sum_probs=229.4

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      .++|.+|--..+ .+++++.+|+.++...+-  ..-.  .........+.+..+.+.+++|+|++.  +-+|.|+.+|=.
T Consensus        15 r~~iNv~PiQrGGiLt~eArkal~E~gDGYSvCD~C~--~Grldei~kPpI~~F~~dlaeFlg~D~--~R~t~GARe~Kf   90 (382)
T COG1103          15 RGFINVNPIQRGGILTEEARKALLEWGDGYSVCDFCL--EGRLDEITKPPIKDFLEDLAEFLGMDE--VRVTAGAREAKF   90 (382)
T ss_pred             cCccccChhhccCcCCHHHHHHHHHhcCCcchhhhhc--cCccccccCCcHHHHHHHHHHHhCCce--eeecccchhhHH
Confidence            466677654444 789999999999875421  0100  011112233567788888999999976  999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC----C---CceEEEEe
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR----P---DTGLISVM  203 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~----~---~t~li~i~  203 (457)
                      +++.+++    ++||-|+++...|.+..-++...   |.++..+|..  ++..++++...+.|+    +   .+.+..++
T Consensus        91 avMhal~----~~gd~vV~D~~aHYttyvAAEra---gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallT  163 (382)
T COG1103          91 AVMHALC----KEGDWVVVDSLAHYTTYVAAERA---GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLT  163 (382)
T ss_pred             HHHHHhc----cCCCEEEEcCcchHHHHHHHHhc---CCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEe
Confidence            9999999    89999999999999999887666   9999999854  455788887777664    2   36899999


Q ss_pred             ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccc
Q 040741          204 AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       204 ~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      ++....|.+.+.+.++++|++||+++++.+|++.|.+|++....++|++++|+|| +-+...+|++.++.+..+.+-...
T Consensus       164 h~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpvs~ke~g~DFiVgSGHKsmAAs~PiGvl~~~eE~ae~V~r~S  243 (382)
T COG1103         164 HVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPVSGKEIGADFIVGSGHKSMAASAPIGVLAMSEEWAEIVLRRS  243 (382)
T ss_pred             ccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccccccccCCCEEEecCccchhccCCeeEEeehhHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999999999999999 444455999999987554432221


Q ss_pred             cC-Ccc-ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          283 NG-GGQ-ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       283 ~~-~~~-~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      .- +.. +.....-|.-...++-+-+++-...+.+. ..+.-.+.++++.+.+++ +.|+...|..- .....+.|.-+.
T Consensus       244 g~~~~~KEvellGCT~rGapivTlmASfP~V~eRVk-rWdeEv~kaR~fv~elEk-igg~~qlG~rP-k~HdLm~Fetp~  320 (382)
T COG1103         244 GRAFPKKEVELLGCTVRGAPIVTLMASFPHVVERVK-RWDEEVEKARWFVAELEK-IGGVKQLGERP-KNHDLMKFETPV  320 (382)
T ss_pred             ccccccceeeeecccccCchHHHHHhcCHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhhHHHhCCCC-cccceeeecCch
Confidence            00 000 00000111111122222223323222222 223334567888899999 88787766432 223333343332


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .  ..+...-  ++..+..             -|+.-   |+.+. ...++.+++-. .+.|+++++++++++++++.
T Consensus       321 f--~eIakk~~r~gyFlY~-------------ELK~RgI~GI~~G-~Tk~~K~svyG-l~~Eqve~V~~afkeI~eky  381 (382)
T COG1103         321 F--HEIAKKHKRKGYFLYE-------------ELKKRGIHGIQPG-QTKYFKLSVYG-LSWEQVEYVVDAFKEIAEKY  381 (382)
T ss_pred             H--HHHHHhCcCCceeeHH-------------HHHhcCccccccC-ceeEEEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence            1  1111111  1111100             11111   11111 12577777654 46899999999999998764

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.90  E-value=2.7e-22  Score=198.12  Aligned_cols=311  Identities=17%  Similarity=0.164  Sum_probs=205.8

Q ss_pred             HHHHHHHHHHHHHHhCCCC-CcEEEeCChH-HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEe
Q 040741          100 EVAVETARSQIADLIGASP-KEIIFTSGAT-ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP  177 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~-~~i~~t~g~T-~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~  177 (457)
                      .....++++.+++++|++. ..++++++|| .++.+++.++... +.+++.||+++..|.+...++..+   |+++++++
T Consensus       104 ~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~-~~~gd~VI~p~~th~S~~kAi~~~---G~~pv~Vd  179 (444)
T TIGR03531       104 YKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK-RPKAKYVIWPRIDQKSCIKAISTA---GFEPRVIE  179 (444)
T ss_pred             HHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc-CCCCCEEEEECcChHHHHHHHHHc---CCeEEEee
Confidence            4678889999999999863 3499999999 6888888876621 125899999999999999999888   99999999


Q ss_pred             C--C-CCCCCCHHHHHHhcCC---CceEEEEeccc-cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-----cCC
Q 040741          178 V--G-ADGIVNLDELRAAIRP---DTGLISVMAVN-NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-----DVE  245 (457)
Q Consensus       178 ~--~-~~~~~d~~~le~~i~~---~t~li~i~~~~-~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~~~  245 (457)
                      .  + .++.+|+++|+++|++   ++.++++..++ +..|...|+++|.++|++||+++|+|+||+.+....     ...
T Consensus       180 ~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~~g~  259 (444)
T TIGR03531       180 TVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELINKAI  259 (444)
T ss_pred             eeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhhccc
Confidence            5  3 5578999999999986   34454444443 334578999999999999999999999999765331     111


Q ss_pred             CC-cccEEEeccccccC-CCCceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Q 040741          246 KW-NVSLMSLSGHKIYG-PKGVGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI  322 (457)
Q Consensus       246 ~~-~~Di~~~s~~K~~g-~~G~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~  322 (457)
                      .. .+|++++|+||.+. |.+.|++++++ +..+++.....+.         ..+.+...++..++....++++++.++.
T Consensus       260 ~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~y~g~---------~~~s~~~~~~~~ll~~G~~g~~~li~~~  330 (444)
T TIGR03531       260 KVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKSYPGR---------ASASPSLDVLITLLSLGSKGYLELLKER  330 (444)
T ss_pred             cccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHhccCC---------CCChHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            12 36999999999655 55567776744 3444444332221         1222334444455555566789999999


Q ss_pred             HHHHHHHHHHHhhcCC---CeEEeCCCCCcccceEEEEEc---cccchHHHhcc--cCe----EecccCccCCCCCChhH
Q 040741          323 TALHDRLLNGIKEKLD---GVVVNGSMERRYIGNLNLSFA---YVEGESLLMGL--KEV----AVSSGSACTSASLEPSY  390 (457)
Q Consensus       323 ~~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l--~~i----~~~~g~~~~~~~~~~~~  390 (457)
                      .++++++.+.|.+ +.   +-++...+.+  +.-+.+++.   ..+...+-..|  ++|    .+.+|..-    .-..+
T Consensus       331 ~~~a~~l~~~L~~-l~~~~~~~~~~~~~n--~is~~~~~~~~~~~~~~~~g~~l~~~~v~g~r~v~~~~~~----~~~~~  403 (444)
T TIGR03531       331 KEMYKYLKELLQK-LAERHGERLLDTPEN--PISSAMTLSTLKGKDPTMLGSMLYSRRVTGPRVVTNGDSK----TVGGC  403 (444)
T ss_pred             HHHHHHHHHHHHH-HHHhhCcEeecCCCC--ceeEEEecccccccCHHHHHHHHHhCCCCCceeecCCCce----EECCE
Confidence            9999999888876 32   3344433332  333334443   22334444444  221    12223200    00011


Q ss_pred             HHHHcCCC-ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVD-EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       391 ~l~~~g~~-~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+..+|.+ +.....++-++....++++|||.++++|++++
T Consensus       404 ~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~~  444 (444)
T TIGR03531       404 EFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKSL  444 (444)
T ss_pred             EeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhcC
Confidence            22333332 22345688888888899999999999998763

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=99.90  E-value=6.6e-21  Score=189.22  Aligned_cols=322  Identities=17%  Similarity=0.195  Sum_probs=209.1

Q ss_pred             EEecCCC---CC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           59 LYLDMQA---TT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        59 i~l~~~~---~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      -|+|+.+   +.   +.+|.+.+++.+.+.... ...   ..+   ..+...++++.+++++|.+  ++++++||++|+.
T Consensus        28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~---~~~---~~~~~~~l~~~la~~~g~~--~~~~~~sg~~a~~   98 (379)
T TIGR00707        28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV-HVS---NLY---YTEPQEELAEKLVEHSGAD--RVFFCNSGAEANE   98 (379)
T ss_pred             EEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc-ccc---ccc---CCHHHHHHHHHHHhhCCCC--EEEEeCCcHHHHH
Confidence            4666655   22   456999999999887532 111   111   2367889999999999975  6999999999999


Q ss_pred             HHHHHhhhhhcC---CCCEEEEcCCCCcchHHHHHHHHhcCcEEE----EEeCCCCC----CCCHHHHHHhcCCCceEEE
Q 040741          133 VSIKGVMHFYKD---KKRHVITTQTEHKCVLDSCRHLQQEGFEIT----YLPVGADG----IVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       133 ~al~~~~~~~~~---~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~----~v~~~~~~----~~d~~~le~~i~~~t~li~  201 (457)
                      ++++.+..+..+   ++++|++..+.|......+...   +....    ..+...+.    ..|++++++.+++++++|+
T Consensus        99 ~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~  175 (379)
T TIGR00707        99 AALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSA---TGQPKYQKGFEPLVPGFSYAPYNDIESLKKAIDDETAAVI  175 (379)
T ss_pred             HHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHh---cCChhhhccCCCCCCCceeeCCCCHHHHHHHhhhCeeEEE
Confidence            999876533221   3688888777765554444433   22111    11111111    1289999999988899999


Q ss_pred             Eecccccccccc-C---hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccCC-CCceEEEEe
Q 040741          202 VMAVNNEIGVIQ-P---MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYGP-KGVGALYMR  271 (457)
Q Consensus       202 i~~~~~~~G~~~-~---l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g~-~G~G~l~~~  271 (457)
                      ++++++++|... +   +++|.++|+++++++++|++++ ++..    +........|++  +++|.+++ .++|+++++
T Consensus       176 ~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~~  253 (379)
T TIGR00707       176 VEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLAK  253 (379)
T ss_pred             EEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEEc
Confidence            998888888653 3   8899999999999999999997 3321    111112245665  46797663 248999998


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ++.++.+.....+.      . ...++..+.++.++++.+..  ....++.+++.+++++.|.+ + +...........+
T Consensus       254 ~~~~~~~~~~~~~~------~-~~~~~~~~~aa~aaL~~~~~--~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~g  322 (379)
T TIGR00707       254 EEVAEAFTPGDHGS------T-FGGNPLACAAALAVLEVIEK--ERLLENVKEKGDYFKERLEE-L-GKNYPNKEVRGKG  322 (379)
T ss_pred             HHHHhhhcCCCCCC------C-CCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-H-HhhCCCCccccCc
Confidence            87666655432111      1 13466667777777776643  34667777788888877766 3 1111001111123


Q ss_pred             ceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          352 GNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .++.+.++. +...+...|  +||.+.++.                       .+++||+++..++++++++++++|+++
T Consensus       323 ~~~~~~~~~-~~~~~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~t~~~i~~~~~~l~~~  378 (379)
T TIGR00707       323 LMLGIELEA-PCKDIVKKALEKGLLVNCAG-----------------------PKVLRFLPPLIITKEEIDEAVSALEEA  378 (379)
T ss_pred             eEEEEEecC-cHHHHHHHHHHCCcEEeeCC-----------------------CCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence            444555542 345566556  688776531                       168999999888999999999999875

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.90  E-value=2.9e-21  Score=206.91  Aligned_cols=291  Identities=13%  Similarity=0.100  Sum_probs=218.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      ..+..+.+.++++++++++|++++++.++.++|.+.+.+++++.. .++++++|++++..|+++...++. ++..|++++
T Consensus       116 sQG~Leal~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~  194 (954)
T PRK05367        116 SQGRLEALLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKRV-SKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV  194 (954)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhhh-ccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence            445568888999999999999999999999999999988887753 112248999999999999988764 467799999


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      .++.+.+    ++      ++++..+ +.+..|.+|.+.|+++|+++||++|+++++|+.+.......++.++|+|++++
T Consensus       195 ~~~~~~d----~~------~~~~~~v-lvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~~pge~GaDi~vg  263 (954)
T PRK05367        195 VGDAAKA----LD------HDDVFGV-LLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLTPPGEMGADIAVG  263 (954)
T ss_pred             EecCccC----CC------cccEEEE-EEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCCChhhcCCCEEEe
Confidence            9987642    11      2344444 44445679999999999999999999999999885555555778899999999


Q ss_pred             ccccc-----cCCCCceEEEEecCCCccccccccCCc-----------------cccccccCCCChhHHHHHHHHHHH--
Q 040741          255 SGHKI-----YGPKGVGALYMRRRPRIRVEPLINGGG-----------------QERGIRSGTLPTPLIVGFGSACEI--  310 (457)
Q Consensus       255 s~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~t~~~~~~~al~~al~~--  310 (457)
                      ++||+     ||.+|.|++++++++..++.+.+.|+.                 ++.++..+|.|+....++.+.+..  
T Consensus       264 s~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a~~a~~y  343 (954)
T PRK05367        264 SAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLAVMASMY  343 (954)
T ss_pred             eCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence            99998     666679999999987777766655532                 112455678777654444333322  


Q ss_pred             ---H-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCC
Q 040741          311 ---A-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSA  384 (457)
Q Consensus       311 ---~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~  384 (457)
                         + ..+++++.++...++.++.+.|.+  +++.+..+   .+...+.+.+. .+..++...|  +||.+..       
T Consensus       344 ~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~--~G~~~~~~---~~f~~~~~~~~-~~~~~i~~~l~~~gi~~~~-------  410 (954)
T PRK05367        344 AVYHGPEGLKAIARRVHRLAAILAAGLRA--LGLEVVHD---SFFDTLTVEVG-GDAAAVLARALAAGINLRR-------  410 (954)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHh--cCcccCCC---CCCCeEEEeCC-CCHHHHHHHHHHCCceecc-------
Confidence               2 347999999999999999999977  67777543   22345555543 3556777666  5665521       


Q ss_pred             CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                                      ...+.+|+++..++|++|||.+++++.
T Consensus       411 ----------------~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        411 ----------------VDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             ----------------ccCCEEEEEecccCCHHHHHHHHHHHc
Confidence                            112689999999999999999999997

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.90  E-value=1.6e-21  Score=196.64  Aligned_cols=291  Identities=12%  Similarity=0.056  Sum_probs=185.5

Q ss_pred             CcEEEeCChHHHHHHHHHHhhh-hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC
Q 040741          119 KEIIFTSGATESNNVSIKGVMH-FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP  195 (457)
Q Consensus       119 ~~i~~t~g~T~a~~~al~~~~~-~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~  195 (457)
                      ++|++|+|+++|+..++.++.. .+.++||+|++..+.|+.+...++.. ..|..++.++.+  .++.+|++++++++++
T Consensus       162 ~~I~vT~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~-g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~  240 (527)
T PRK09275        162 FDLFAVEGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELP-RYDLEVVHINADEENEWQYPDSELEKLRDP  240 (527)
T ss_pred             CeEEEeCCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHc-CCCeEEEEeecCcccCCCCCHHHHHhhcCC
Confidence            3799999999999999887310 01189999999999999998876655 123455555543  3467899999999999


Q ss_pred             CceEEEEeccccccccccC---hHHHHHHHHh--cCCcEEEehhhhcCCCc-ccCC--CCcccEEEeccccccCCCC--c
Q 040741          196 DTGLISVMAVNNEIGVIQP---MEEIGQICKE--FKIPFHTDAAQALGKIP-VDVE--KWNVSLMSLSGHKIYGPKG--V  265 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~---l~~i~~l~~~--~~v~li~D~a~~~g~~~-~~~~--~~~~Di~~~s~~K~~g~~G--~  265 (457)
                      ++++|++++|+||||.+++   +++|+++|++  ++++||+|++|+--... ..+.  .....+++.|++|.||.+|  +
T Consensus       241 ~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~~~~~~I~v~SfSK~f~mtG~Rl  320 (527)
T PRK09275        241 SIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAVLPYNTILVYSFSKYFGATGWRL  320 (527)
T ss_pred             CCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHhCCCCEEEEeehhhhccCcHhHH
Confidence            9999999999999999998   7778888965  49999999999732211 1111  1124588889999988776  8


Q ss_pred             eEEEEecC-----CCcccc--------cccc----C--------------CccccccccCCCChhHHH-H---HHHHHHH
Q 040741          266 GALYMRRR-----PRIRVE--------PLIN----G--------------GGQERGIRSGTLPTPLIV-G---FGSACEI  310 (457)
Q Consensus       266 G~l~~~~~-----~~~~~~--------~~~~----~--------------~~~~~~~~~~t~~~~~~~-a---l~~al~~  310 (457)
                      |+++++++     .+.++.        ..+.    .              .........+.+.+.+.+ +   +.++++.
T Consensus       321 G~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~  400 (527)
T PRK09275        321 GVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE  400 (527)
T ss_pred             hhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC
Confidence            99998875     222220        0000    0              000001122233333333 2   2222332


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----------------ccchHHHhcc---
Q 040741          311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----------------VEGESLLMGL---  370 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l---  370 (457)
                      .....+...+.++++++.+.+.|..   .+... ++..  ..++.+.+..                 .++.+++..|   
T Consensus       401 ~~~~~~~~~~~~~~Rr~~l~~~Lg~---~~~~~-~p~g--~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e  474 (527)
T PRK09275        401 EDAYKKAMKDIIRRRYKALYEGLGL---PEPED-PNNA--AYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEE  474 (527)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHcCC---CCcCC-CCCe--eEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhc
Confidence            2233566777777777777666621   11111 1222  1122222221                 1345555555   


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .+|++.+|..+..                  .++++||++.. .+++++..+.++|.+++++..+
T Consensus       475 ~gV~v~PG~~Fg~------------------~~~~vRis~a~-~~~~~~~~~~~rl~~~l~~y~~  520 (527)
T PRK09275        475 TGVVLLPGGGFGG------------------PEWSVRVSLAN-LNEEDYAKIGKAIRKLLDEYYE  520 (527)
T ss_pred             CCEEEeCchhhCC------------------CCCeEEEEEec-CCHHHHHHHHHHHHHHHHHHHH
Confidence            5899999975532                  12789999974 3689999999999999987754

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.90  E-value=1.9e-21  Score=181.45  Aligned_cols=338  Identities=19%  Similarity=0.247  Sum_probs=239.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      .++-+..++.|++|+...+++.|  |.|+.|-| .|....+.++. +.++..++||++..++.-.| |+.||..++.++.
T Consensus        32 IASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyY-gGce~VD~vE~laierak~LFga~~anVQPhS-Gs~AN~av~~All  109 (413)
T COG0112          32 IASENFTSPAVMEAQGSDLTNKYAEGYPGKRYY-GGCEYVDEVEELAIERAKKLFGAEYANVQPHS-GSQANQAVYLALL  109 (413)
T ss_pred             eeccccCCHHHHHHHhhhhhhccccCCCCcccc-CCCeeHHHHHHHHHHHHHHHhCCCccccCCCC-chHHHHHHHHHHc
Confidence            34566889999999999999877  57776444 34444455555 78888999999877776665 6778999999999


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccccccccCh
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l  215 (457)
                          +|||.|+-.+..|.+.+.........|  ++++..+++ +++.+|.|++++.+. .++++|+.-.-  -+-...|+
T Consensus       110 ----~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~S--aY~r~id~  183 (413)
T COG0112         110 ----QPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGS--AYSRPIDF  183 (413)
T ss_pred             ----CCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECcc--ccccccCH
Confidence                999999988888777665431111112  567777888 668999999999775 57888877443  34467889


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCC-----CcccCCCCcccEEEecccc-ccCCCCceEEEEec-CCCccccccccCCccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGK-----IPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRR-RPRIRVEPLINGGGQE  288 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~-----~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~-~~~~~~~~~~~~~~~~  288 (457)
                      ++++++|++.|.++++|.||-.|-     .+-++.  .+|+++.|.|| +.||.| |+++.++ ++.+++.....-+.+ 
T Consensus       184 ~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~--~AdvVTtTTHKTlrGPrG-G~Il~~~eel~kkin~aVFPg~q-  259 (413)
T COG0112         184 KRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLP--HADVVTTTTHKTLRGPRG-GIILTNDEELAKKINSAVFPGLQ-  259 (413)
T ss_pred             HHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCC--ccceEeCCcccCCCCCCc-eEEEeccHHHHHHhhhhcCCccC-
Confidence            999999999999999999996542     232232  38999999999 889997 9999886 455555543322211 


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGES  365 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  365 (457)
                           |.|-...+++...|++...+ +++...+++.++++.+.+.|.+  .|+.+++.-..  ...+.+.+.  +.++.+
T Consensus       260 -----ggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~--~G~~vvsGgTd--nHl~lVDl~~~~~~Gk~  330 (413)
T COG0112         260 -----GGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE--RGFKVVSGGTD--NHLVLVDLRSKGLTGKK  330 (413)
T ss_pred             -----CChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH--cCCeEecCCcc--ceEEEEEcccCCCCHHH
Confidence                 34555667777777777665 5889999999999999999999  68888864333  333444443  445666


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC----CHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT----TEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~----t~edid~~~~~l~~~~~~~~  434 (457)
                      ....|  .||.+.-.....-.             ........|||+....+    .++|++++.+.|.++++..+
T Consensus       331 ae~~L~~~~It~NKN~iP~D~-------------~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~  392 (413)
T COG0112         331 AEAALERAGITVNKNAIPFDP-------------ESPFVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK  392 (413)
T ss_pred             HHHHHHHcCEeeccCCCCCCC-------------CCCCCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence            65566  36655443221110             11234578999976654    47899999999888887655

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.89  E-value=2.3e-21  Score=193.33  Aligned_cols=322  Identities=15%  Similarity=0.072  Sum_probs=203.9

Q ss_pred             CcEEecCCCC---C-CCC--HHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcE--E
Q 040741           57 RPLYLDMQAT---T-PVD--PRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEI--I  122 (457)
Q Consensus        57 ~~i~l~~~~~---~-~~~--~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i--~  122 (457)
                      +.|.|..+.+   . ..|  +.+.+++.+.....    .  .  .+|.......++|+.+++++.      ++++++  +
T Consensus        27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~----~--~--~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~   98 (396)
T PRK09257         27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE----T--T--KNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATV   98 (396)
T ss_pred             CcEecceeeEECCCCCEeccHHHHHHHHHhcccc----c--C--CCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEE
Confidence            4566666532   1 223  67777777665321    0  0  112222345677777777652      256666  9


Q ss_pred             EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-C-CCCCCCHHHHHHhcC---CCc
Q 040741          123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-G-ADGIVNLDELRAAIR---PDT  197 (457)
Q Consensus       123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~le~~i~---~~t  197 (457)
                      +|+|+++|+.+++..+...  ++||.|++.++.|+.+...++..   |++++.++. + +++.+|+++++++++   +++
T Consensus        99 iT~Ga~~al~~~~~~l~~~--~pGd~Vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~  173 (396)
T PRK09257         99 QTPGGTGALRVGADFLKRA--FPDAKVWVSDPTWPNHRAIFEAA---GLEVKTYPYYDAATKGLDFDAMLADLSQAPAGD  173 (396)
T ss_pred             ecCCccHHHHHHHHHHHHh--CCCCeEEECCCCcccHHHHHHHc---CCcEEEEeccccccCccCHHHHHHHHHhCCCCC
Confidence            9999999999998765311  79999999999999999888776   999999987 2 346799999999875   446


Q ss_pred             eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----c---cCCC-CcccEEEeccccccCCCC-
Q 040741          198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----V---DVEK-WNVSLMSLSGHKIYGPKG-  264 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~---~~~~-~~~Di~~~s~~K~~g~~G-  264 (457)
                      .+++++++|||||.+.+   +++|+++|++||+++++|+++.--...     .   .+.. ...-+++.|++|.++++| 
T Consensus       174 ~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl  253 (396)
T PRK09257        174 VVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGE  253 (396)
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccc
Confidence            78888999999999988   677889999999999999998632211     0   0111 123477899999888765 


Q ss_pred             -ceEEEE--ec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          265 -VGALYM--RR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI------AKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       265 -~G~l~~--~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                       +||+++  .+ +...++...+...   .......++.....++...+..      ..+.+++.+++++++++.+.+.|+
T Consensus       254 RiG~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~  330 (396)
T PRK09257        254 RVGALSVVAEDAEEADRVLSQLKAT---IRTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALK  330 (396)
T ss_pred             cceeEEEEeCCHHHHHHHHHHHHHH---hhhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             899984  21 2111221111000   0001123333333333333322      133467788889999999999998


Q ss_pred             hcCC---CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe
Q 040741          335 EKLD---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG  409 (457)
Q Consensus       335 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~  409 (457)
                      + ..   ++.+..+     .+.+.+++. .+.+.+...+  .||.+.+.                         +  ||+
T Consensus       331 ~-~~~~~~~~~~~p-----~gg~~~w~~-l~~~~~~~l~~~~~V~~~p~-------------------------~--ri~  376 (396)
T PRK09257        331 A-KGPSRDFDFIAR-----QRGMFSYSG-LTPEQVDRLREEFGVYAVGS-------------------------G--RIN  376 (396)
T ss_pred             h-cCCCCCcccccc-----cceEEEecC-CCHHHHHHHHHcCCEEEcCC-------------------------C--eEE
Confidence            8 42   2444332     122233443 3323322222  47766420                         2  899


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 040741          410 IGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       410 ~~~~~t~edid~~~~~l~~~  429 (457)
                      ++. .++++|++++++|+++
T Consensus       377 ~~~-~~~~~i~~~~~~i~~~  395 (396)
T PRK09257        377 VAG-LNESNIDYVAEAIAAV  395 (396)
T ss_pred             Eee-CCHHHHHHHHHHHHhh
Confidence            865 5689999999999875

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.89  E-value=5e-21  Score=184.50  Aligned_cols=311  Identities=15%  Similarity=0.150  Sum_probs=223.7

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G  170 (457)
                      .+.|++...+....+++.++++-|.+.  ++.+++|..|+..++.++.    ++||+|++++..|.+...-+... .+.|
T Consensus        54 ~~~Y~R~~nPT~~~lE~~~a~LEg~~~--~~afsSGmaAI~~~~l~ll----~~GD~vl~~~~~YG~t~~~~~~~l~~~g  127 (396)
T COG0626          54 GYDYSRTGNPTRDALEEALAELEGGED--AFAFSSGMAAISTALLALL----KAGDHVLLPDDLYGGTYRLFEKILQKFG  127 (396)
T ss_pred             CcccccCCCccHHHHHHHHHHhhCCCc--EEEecCcHHHHHHHHHHhc----CCCCEEEecCCccchHHHHHHHHHHhcC
Confidence            344555556788899999999998765  8999999999999999998    89999999999888887776644 6779


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      +++.+++..     |.+++++++. ++|++|+++.|.||+-.+.|+++|+++|+++|+++++|.+.+.+..- ..-+.|+
T Consensus       128 i~~~~~d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~q-~PL~~Ga  201 (396)
T COG0626         128 VEVTFVDPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVLQ-RPLELGA  201 (396)
T ss_pred             eEEEEECCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCccccccc-ChhhcCC
Confidence            999999865     5666777776 59999999999999999999999999999999999999999876442 2334579


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCcc-ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      |+++-|.+|++|.-.   .|+++.+++.+.. +......      .....+++....-+...+    ..+.-++++..++
T Consensus       202 DIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~------~~G~~l~p~dA~l~lRGl----kTL~~Rm~~~~~n  271 (396)
T COG0626         202 DIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRA------NTGAVLSPFDAWLLLRGL----RTLALRMERHNEN  271 (396)
T ss_pred             CEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHh------hcCCCCCHHHHHHHHhcc----chHHHHHHHHHHH
Confidence            999999999665332   4656655543322 2111110      011133333333222222    3467888899999


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEcc-ccchHHHhccc--CeEecccCccCCCC---
Q 040741          326 HDRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAY-VEGESLLMGLK--EVAVSSGSACTSAS---  385 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~~~~l~--~i~~~~g~~~~~~~---  385 (457)
                      +..+.+.|++ .|.++-+-.|.              ...++++.|.+.+ ....+++..|+  .++.+-|...+...   
T Consensus       272 A~~IA~~L~~-~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~~~~~f~~~L~l~~~a~SlGgveSLi~~pa  350 (396)
T COG0626         272 ALKIAEFLAD-HPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEEAAKKFLDSLKLFKLAESLGGVESLISHPA  350 (396)
T ss_pred             HHHHHHHHhc-CCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChHHHHHHHHhCCccEEeccCCCccccccccc
Confidence            9999999999 77775332221              1267888888875 44556777774  55666676543222   


Q ss_pred             -CC----hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          386 -LE----PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       386 -~~----~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                       +.    |.-.....|+.+    +.||++++.    ||++.+++.|+++++.+
T Consensus       351 ~~th~~~~~~~r~~~Gi~~----~LvRlSVGl----Ed~eDLi~Dl~~Al~~~  395 (396)
T COG0626         351 TMTHASIPLEERAKAGITD----GLVRLSVGL----EDVEDLIADLEQALAKA  395 (396)
T ss_pred             ccCcccCCHhHHHhcCCCC----CeEEEEecC----CCHHHHHHHHHHHHHhh
Confidence             21    122445677776    899999997    89999999999998764

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.89  E-value=3.2e-21  Score=187.85  Aligned_cols=272  Identities=16%  Similarity=0.085  Sum_probs=190.0

Q ss_pred             HHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC
Q 040741          104 ETARSQIADLIGAS-PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG  182 (457)
Q Consensus       104 ~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~  182 (457)
                      .++++.+++++|++ ++++++|+|+++++.++.. +.    ++|+ |++..+.|+.+...++..   |.+++.++.+.  
T Consensus        56 ~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~~----~~g~-v~v~~P~y~~y~~~~~~~---g~~~~~v~~~~--  124 (339)
T PRK06959         56 DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-LL----PRGR-VGIAPLAYSEYAPAFARH---GHRVVPLDEAA--  124 (339)
T ss_pred             HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-hc----CCCe-EEEcCCCcHHHHHHHHHC---CCEEEeecccc--
Confidence            78999999999996 4799999999999986543 44    5676 888889998888877666   99998887652  


Q ss_pred             CCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHH---HHhcCCcEEEehhhhcCCCccc---CCCCcccEEEecc
Q 040741          183 IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQI---CKEFKIPFHTDAAQALGKIPVD---VEKWNVSLMSLSG  256 (457)
Q Consensus       183 ~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l---~~~~~v~li~D~a~~~g~~~~~---~~~~~~Di~~~s~  256 (457)
                          +.    +.+.++++++++||||||.+.+.+++.++   |++++.++++|+++.-......   ......-+++.|+
T Consensus       125 ----~~----~~~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s~~~~~~~~~vi~l~Sf  196 (339)
T PRK06959        125 ----DT----LPAALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAASLAAHTDRPGLVVLRSV  196 (339)
T ss_pred             ----hh----ccccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCcccchhccCCCCEEEEecC
Confidence                22    23345689999999999999996665554   6678999999999874321111   1111223788899


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      +|.||.+|  +|+++++++.++++......+         ..+.....++.++++. .+..++..+++++.++++.+.|+
T Consensus       197 SK~~gl~GlRiGy~v~~~~li~~l~~~~~~~---------~vs~~~q~a~~~~L~~-~~~~~~~~~~~~~~r~~l~~~L~  266 (339)
T PRK06959        197 GKFFGLAGVRAGFVLAAPALLAALRDALGAW---------TVSGPARHAVRAAFAD-AAWQAAMRERLAADGARLAALLR  266 (339)
T ss_pred             hhhcCCcchheEEEecCHHHHHHHHHhcCCC---------CCcHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888666  899999887766665443221         2344444444445532 22356777888899999999999


Q ss_pred             hcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC
Q 040741          335 EKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR  412 (457)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~  412 (457)
                      + + ++.+..     .+.++.+.++  +...+...|  +||.++.   |..                   .++|||+++.
T Consensus       267 ~-~-g~~~~~-----~~~f~~~~~~--~~~~l~~~l~~~GI~vr~---~~~-------------------~~~lRisi~~  315 (339)
T PRK06959        267 A-H-GFAVHA-----TPLFSWTDDP--RAAALHAALARRGIWTRY---FAP-------------------PPSVRFGLPA  315 (339)
T ss_pred             H-C-CCCccC-----cceEEEEeCC--CHHHHHHHHHhCCeEEEE---CCC-------------------CCeEEEECCC
Confidence            8 4 555432     1233333332  445666666  6888852   211                   1689999853


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcC
Q 040741          413 FTTEAEVDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       413 ~~t~edid~~~~~l~~~~~~~~~~~  437 (457)
                        +.+|.++++++|+++++.+...|
T Consensus       316 --~~~e~~~l~~al~~~~~~~~~~~  338 (339)
T PRK06959        316 --DEAEWQRLEDALAECVPTLAAAS  338 (339)
T ss_pred             --CHHHHHHHHHHHHHHHHHHhhcc
Confidence              57899999999999998887654

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=99.89  E-value=1.5e-20  Score=187.86  Aligned_cols=328  Identities=16%  Similarity=0.199  Sum_probs=209.4

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +..+|++.+++.+.+.......   . .  + ..+...++++.|+++.+.  +.++|++||++
T Consensus        38 dG~~~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~-~--~-~~~~~~~l~~~l~~~~~~--~~~~~~~sGse  108 (403)
T PRK05093         38 QGKEYIDFAGGIAVTALGHCHPALVKALKEQGEKLWHIS---N-V--F-TNEPALRLAKKLIDATFA--ERVFFANSGAE  108 (403)
T ss_pred             CCCEEEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCccc---C-c--c-CCHHHHHHHHHHHhhCCC--CEEEEeCchHH
Confidence            44557887553      3578999999999987532111   1 0  1 113456899999998765  35999999999


Q ss_pred             HHHHHHHHhhhhhc-----CCCCEEEEcCCCCcchHHHHHHHHh----cC-----cEEEEEeCCCCCCCCHHHHHHhcCC
Q 040741          130 SNNVSIKGVMHFYK-----DKKRHVITTQTEHKCVLDSCRHLQQ----EG-----FEITYLPVGADGIVNLDELRAAIRP  195 (457)
Q Consensus       130 a~~~al~~~~~~~~-----~~g~~vi~~~~~h~~~~~~~~~~~~----~G-----~~v~~v~~~~~~~~d~~~le~~i~~  195 (457)
                      |+..+++....+..     ++...|.+....|.....+......    .|     .++..++.+     |++++++.+.+
T Consensus       109 A~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  183 (403)
T PRK05093        109 ANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDD  183 (403)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcC
Confidence            99999997654431     2334455666678777655443210    01     123333333     89999999988


Q ss_pred             CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--ccc--CCCCcccEEEeccccccCC-CCc
Q 040741          196 DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVD--VEKWNVSLMSLSGHKIYGP-KGV  265 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~--~~~~~~Di~~~s~~K~~g~-~G~  265 (457)
                      ++++|+++.++++.|...|    +++|.++|++||+++|+|++|+ ++..  ...  .....+|+.  |++|.+|+ -.+
T Consensus       184 ~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~--s~sK~l~~G~ri  261 (403)
T PRK05093        184 HTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPI  261 (403)
T ss_pred             CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCCEE--EecccccCCcce
Confidence            8999999976655565544    8999999999999999999987 2211  111  112246755  55696652 239


Q ss_pred             eEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeC
Q 040741          266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD-GVVVNG  344 (457)
Q Consensus       266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~  344 (457)
                      |+++++++..+.+.....+      ... ..++..++++.++++.+..  ....++++++.+++.+.|++ +. .+.+..
T Consensus       262 g~vv~~~~i~~~l~~~~~~------~t~-~~~~~~~~aa~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~  331 (403)
T PRK05093        262 GAMLTTAEIASHFKVGTHG------STY-GGNPLACAVAEAVFDIINT--PEVLEGVKARRQRFVDGLQK-INQKYGVFS  331 (403)
T ss_pred             EEEEEcHHHHhhcCCCCCC------CCC-CCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhhCCCeE
Confidence            9999988766665543221      112 3455566666677777644  45567788888888888877 31 111111


Q ss_pred             CCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          345 SMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .. ...+.++.+.+...   ...++...+  +||.+.++.                       .+.+||+++..+++++|
T Consensus       332 ~~-~~~G~~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------------~~~lRl~~~~~~~~~~i  387 (403)
T PRK05093        332 EI-RGMGLLIGAELKPQYKGRARDFLNAAAEEGVMVLVAG-----------------------PDVLRFAPSLVIEEADI  387 (403)
T ss_pred             eE-eeCceEEEEEecCcchhHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHH
Confidence            10 01133333444211   234555554  577765321                       26899999999899999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      ++++++|+++++++
T Consensus       388 ~~~~~~l~~~l~~~  401 (403)
T PRK05093        388 DEGLARFEKAVAKV  401 (403)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.89  E-value=8.7e-21  Score=185.71  Aligned_cols=290  Identities=18%  Similarity=0.259  Sum_probs=194.6

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-------CcEEEeCChHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-------KEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-------~~i~~t~g~T~  129 (457)
                      ++-|+.+-.+++.+..++..+.....+.  |.  ..+..+....+.-.++.+++++++|.+.       ...+||+|||+
T Consensus        39 ~P~~~~~~~~~~~~~~i~~~~l~~~~n~--n~--~~~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~  114 (373)
T PF00282_consen   39 HPRFFGFVPGGPSPASILADLLASALNQ--NG--FTWEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTE  114 (373)
T ss_dssp             STTBESSSHT--CHHHHHHHHHHHHHT---BT--TSTTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHH
T ss_pred             ChhHhhhccCCccHHHHHHHHHHhhhcc--cc--cccccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchH
Confidence            3457777666666666655554443322  21  1333445556777789999999999971       34899999999


Q ss_pred             HHHHHHHHhhhhhcC----------CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---C
Q 040741          130 SNNVSIKGVMHFYKD----------KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---D  196 (457)
Q Consensus       130 a~~~al~~~~~~~~~----------~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~  196 (457)
                      |+..++.+.+..+..          ++..|++++..|.++..++..+   |+.++.||+++++.+|+++|+++|..   +
T Consensus       115 anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~l---Glg~~~I~~~~~~~md~~~L~~~l~~~~~~  191 (373)
T PF00282_consen  115 ANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARIL---GLGVRKIPTDEDGRMDIEALEKALEKDIAN  191 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHT---TSEEEEE-BBTTSSB-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhccee---eeEEEEecCCcchhhhHHHhhhhhcccccc
Confidence            999999887644321          2346788888999999999998   99999999999999999999998853   2


Q ss_pred             ---ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc------ccCCCCcccEEEeccccc-cCCCCce
Q 040741          197 ---TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP------VDVEKWNVSLMSLSGHKI-YGPKGVG  266 (457)
Q Consensus       197 ---t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~------~~~~~~~~Di~~~s~~K~-~g~~G~G  266 (457)
                         +-+|+.+...+.+|.+.|+++|+++|+++++++|+|+|++.....      ....-..+|.+++++||+ +.|.++|
T Consensus       192 g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~  271 (373)
T PF00282_consen  192 GKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCG  271 (373)
T ss_dssp             TEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-E
T ss_pred             cccceeeeccCCCcccccccCHHHHhhhccccceeeeecccccccccccccccccccccccccccccchhhhhcCCccce
Confidence               336778888889999999999999999999999999999864331      111112589999999995 4588999


Q ss_pred             EEEEecCCCc-cc---c-ccccCCc----ccc-cccc---CCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHH
Q 040741          267 ALYMRRRPRI-RV---E-PLINGGG----QER-GIRS---GTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       267 ~l~~~~~~~~-~~---~-~~~~~~~----~~~-~~~~---~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~~~~l~~~  332 (457)
                      +++++++..- ..   . +++....    ... ....   ++- -.....+-.+++ +..+++.+..++..++++++.+.
T Consensus       272 ~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~~~tl~~SR-~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~  350 (373)
T PF00282_consen  272 VLLVRDKSDLRDAFSINADYLGNDDRESDESYDYGDYTLQGSR-RFRALKLWATLKSLGREGYRERIRRCIELARYLADR  350 (373)
T ss_dssp             EEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEEEGSSSSSG-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEeecccchHHHhccChhhhcccccccccccccccccccccc-cchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999986321 11   1 1111000    000 0000   111 122233333444 34567999999999999999999


Q ss_pred             HhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          333 IKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       333 l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      |++ .+++++..++.   .+++.|++
T Consensus       351 l~~-~~~~el~~~~~---~~~vcFr~  372 (373)
T PF00282_consen  351 LRK-DPRFELVNEPD---LNIVCFRY  372 (373)
T ss_dssp             HHT-STTEEESSTTS---SSEEEEEE
T ss_pred             HHh-CCCEEEEcCCC---ceEEEEEe
Confidence            999 89999987543   55566654

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.89  E-value=6.3e-21  Score=192.12  Aligned_cols=344  Identities=13%  Similarity=0.072  Sum_probs=209.6

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHH-HHHHHHhC---CCCC--cEEEeCChH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETAR-SQIADLIG---ASPK--EIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~-~~la~~~g---~~~~--~i~~t~g~T  128 (457)
                      .+.+.|..+.+...+++.++++.+.... .|..|.+        ..+..+++. +.+.+..+   .+++  ++++|+|++
T Consensus        94 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~Y~~p~g--------~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat  165 (521)
T TIGR03801        94 RDIISYVIDQLGFDPDAFLYEMCDGIIGDNYPVPDR--------MLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGT  165 (521)
T ss_pred             HHHHhhcCCCCCCCCCHHHHHHHHHhhcCCCCCCCC--------CHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHH
Confidence            3446666666664466667777776432 1111111        112333322 33344333   2333  799999999


Q ss_pred             HHHHHHHHHhhh-hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--C-----CCCCHHHHHHhcCCCceEE
Q 040741          129 ESNNVSIKGVMH-FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--D-----GIVNLDELRAAIRPDTGLI  200 (457)
Q Consensus       129 ~a~~~al~~~~~-~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~-----~~~d~~~le~~i~~~t~li  200 (457)
                      +|+..++.++.. ...++||+|++..+.|+.+...+... ..|.+++.++.+.  +     +.+|++++++++++++++|
T Consensus       166 ~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~-~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~~~kai  244 (521)
T TIGR03801       166 AAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELP-RYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDPSIKAL  244 (521)
T ss_pred             HHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHh-cCCcEEEEeecccccccccccCCCCHHHHHHhcCCCCcEE
Confidence            999998887310 01189999999999999988876653 2367777777652  1     5689999999999999999


Q ss_pred             EEeccccccccccC---hHHHHHHHHhc--CCcEEEehhhhcCCCc-ccCCC--CcccEEEeccccccCCCC--ceEEEE
Q 040741          201 SVMAVNNEIGVIQP---MEEIGQICKEF--KIPFHTDAAQALGKIP-VDVEK--WNVSLMSLSGHKIYGPKG--VGALYM  270 (457)
Q Consensus       201 ~i~~~~~~~G~~~~---l~~i~~l~~~~--~v~li~D~a~~~g~~~-~~~~~--~~~Di~~~s~~K~~g~~G--~G~l~~  270 (457)
                      ++++|+||||.+.+   +++|+++|++|  +++||+|++++--... ..+..  ...-+++.|++|.||.+|  +|++++
T Consensus       245 ~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~sl~~~~~~~vI~v~SfSK~fg~~G~RlG~i~~  324 (521)
T TIGR03801       245 FVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVDDFRSLFAELPYNTIGVYSFSKYFGATGWRLGTIAL  324 (521)
T ss_pred             EEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcccccchhhhCCCCEEEEEcchhhccCchhhhhhhhc
Confidence            99999999999998   77788889987  9999999999732211 11111  123578889999888766  999998


Q ss_pred             ecC-----CCccc--------cccccC------------------CccccccccCCCChhHHH--H---HHHHHHHHHHh
Q 040741          271 RRR-----PRIRV--------EPLING------------------GGQERGIRSGTLPTPLIV--G---FGSACEIAKKE  314 (457)
Q Consensus       271 ~~~-----~~~~~--------~~~~~~------------------~~~~~~~~~~t~~~~~~~--a---l~~al~~~~~~  314 (457)
                      +++     ++..+        ...+..                  .........|. +.++..  +   +.++++.....
T Consensus       325 ~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~-s~p~Q~q~al~a~~all~~~~~y  403 (521)
T TIGR03801       325 HKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGL-STPQQVQMALFSLFALMDKENAY  403 (521)
T ss_pred             CchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCC-CcHHHHHHHHHHHHHHhccchhH
Confidence            764     11111        000000                  00000112222 333322  2   22222222223


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CCCCCcccceEEEEEccc-----------------cchHHHhcc---cCe
Q 040741          315 MDYDHKRITALHDRLLNGIKEKLDGVVVN-GSMERRYIGNLNLSFAYV-----------------EGESLLMGL---KEV  373 (457)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~l---~~i  373 (457)
                      .+...+.++++++.+.+.|     ++.+. .++..  ..++.+.+...                 ++.+++..|   .||
T Consensus       404 ~~~~~~~~~~R~~~l~~~L-----g~~~~~~~~~g--~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV  476 (521)
T TIGR03801       404 KAETKDICRRREKLLFRGL-----GLPLQEDPNDV--AYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI  476 (521)
T ss_pred             HHHHHHHHHHHHHHHHHhc-----CCCCcCCCCCe--EEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence            5666667777777776665     22211 11221  22233333311                 344566656   589


Q ss_pred             EecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          374 AVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       374 ~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .+.+|..+..              .    ++++||++.. .++++++++.++|++++++..+
T Consensus       477 ~v~PG~~Fg~--------------~----~~~vRisla~-l~~~~~~~~~~rl~~~~~~~~~  519 (521)
T TIGR03801       477 VLLPGGGFGG--------------P----EWSVRVSLAN-LNEYDYAEIGRAIRKILDEYYE  519 (521)
T ss_pred             EEeCchhcCC--------------C----CCeEEEEecC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999975432              1    2689999964 4688999999999999987653

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.89  E-value=4.9e-21  Score=191.39  Aligned_cols=328  Identities=14%  Similarity=0.032  Sum_probs=204.6

Q ss_pred             CcEEecCCCC--CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEE--EeCC
Q 040741           57 RPLYLDMQAT--TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEII--FTSG  126 (457)
Q Consensus        57 ~~i~l~~~~~--~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~--~t~g  126 (457)
                      +.+.|..+.+  ...+..+.+++.+.+........  ..  +|.......++|+.+++++.      +++++++  .|.|
T Consensus        30 ~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~--~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G  105 (404)
T PTZ00376         30 SKVNLGIGAYRDENGKPYVLESVRKAEKIIAEKNL--DK--EYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALS  105 (404)
T ss_pred             ccEecccceeECCCCCEehhhHHHHHHHHhccccC--CC--CCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccC
Confidence            4466665543  13333445555555432211100  11  22222456678888888652      3566787  4899


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC---CCceEEE
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR---PDTGLIS  201 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~---~~t~li~  201 (457)
                      ++.|+.+++..+..+ .++||.|++.++.|+.+...++.+   |++++.++..  .++.+|++.++++++   +++++++
T Consensus       106 ~~~al~~~~~~l~~~-~~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~  181 (404)
T PTZ00376        106 GTGALRLGFEFLKRF-LPAGTTVYVSNPTWPNHVNIFKSA---GLNVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLL  181 (404)
T ss_pred             cchHHHHHHHHHHHh-cCCCCEEEEcCCCchhHHHHHHHc---CCceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEE
Confidence            999998887643211 189999999999999998887776   9999999983  346789999999884   4567888


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCC-CcccEEEeccccccCCCC--ce
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEK-WNVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~-~~~Di~~~s~~K~~g~~G--~G  266 (457)
                      ++++|||||.+.+   +++|+++|++|+++|++|+++.--...         ..... ...-+++.|+||.+|.+|  +|
T Consensus       182 ~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG  261 (404)
T PTZ00376        182 HACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIG  261 (404)
T ss_pred             eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccc
Confidence            9999999999988   667888899999999999998632111         01111 113478889999888555  99


Q ss_pred             EEE---EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741          267 ALY---MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       267 ~l~---~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                      |++   .+++..+++...+...   .....+..+.....++..+++..      .+.+.+..++++++++.+.+.|.+ +
T Consensus       262 ~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~  337 (404)
T PTZ00376        262 ALHIVCANKEEAANVLSQLKLI---IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKA-L  337 (404)
T ss_pred             eEEEEeCCHHHHHHHHHHHHHH---HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            984   3443322222111000   00011233433444444444321      122456667888899999999988 4


Q ss_pred             C---CeEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          338 D---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       338 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                      .   ++.+..+     .+.+.+++. . ..++...|   .||.+.+|                         +  ||+++
T Consensus       338 ~~~~~~~~~~p-----~gg~f~~~~-~-~~~~~~~L~~~~~v~v~p~-------------------------~--Ris~~  383 (404)
T PTZ00376        338 GSPGDWEHIIN-----QIGMFSFTG-L-TKEQVERLIEKYHIYLLDN-------------------------G--RISVA  383 (404)
T ss_pred             CCCCccccccc-----CceEEEecC-C-CHHHHHHHHHhCCEeecCC-------------------------C--eEEEe
Confidence            2   1222222     122233333 2 23455555   37776543                         2  89986


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 040741          412 RFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       412 ~~~t~edid~~~~~l~~~~~  431 (457)
                      . .+.+++++++++|++++.
T Consensus       384 ~-~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        384 G-LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             c-cCHHhHHHHHHHHHHHHh
Confidence            4 578999999999998875

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=99.89  E-value=7.6e-20  Score=182.69  Aligned_cols=327  Identities=16%  Similarity=0.184  Sum_probs=204.7

Q ss_pred             CcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.      ++-.|++.+++.+.+...... .   ..   ...+...++.++++++.+.  ++++|++||++|
T Consensus        38 g~~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~~~-~---~~---~~~~~~~~la~~l~~~~~~--~~v~~~~gg~eA  108 (396)
T PRK02627         38 GKEYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLIHT-S---NL---YYIEPQEELAEKLVELSGM--DKVFFCNSGAEA  108 (396)
T ss_pred             CCEEEECCccHHhccCCCCCHHHHHHHHHHHhhcccc-c---cc---cCCHHHHHHHHHHHhhcCC--CEEEECCCcHHH
Confidence            3346776542      233589999999988653211 0   11   1135777888999998775  579999999999


Q ss_pred             HHHHHHHhhhhhcCC---CCEEEEcCCCCcchHHHHHHHHhcCcEE---EEEeCCCCC----CCCHHHHHHhcCCCceEE
Q 040741          131 NNVSIKGVMHFYKDK---KRHVITTQTEHKCVLDSCRHLQQEGFEI---TYLPVGADG----IVNLDELRAAIRPDTGLI  200 (457)
Q Consensus       131 ~~~al~~~~~~~~~~---g~~vi~~~~~h~~~~~~~~~~~~~G~~v---~~v~~~~~~----~~d~~~le~~i~~~t~li  200 (457)
                      +.++++.+..+....   +++|++....|.........+  .+...   .+.+...+.    ..|++++++++++++++|
T Consensus       109 ~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v  186 (396)
T PRK02627        109 NEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSA--TGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITDKTAAV  186 (396)
T ss_pred             HHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHh--cCCccccccCCCCCCCceEeCCCCHHHHHHhcCCCeEEE
Confidence            999999776432211   266776665554443332222  12111   111111111    128999999999899999


Q ss_pred             EEecccccccc-ccC---hHHHHHHHHhcCCcEEEehhhh-cCCC--ccc--CCCCcccEEEeccccccCC-CCceEEEE
Q 040741          201 SVMAVNNEIGV-IQP---MEEIGQICKEFKIPFHTDAAQA-LGKI--PVD--VEKWNVSLMSLSGHKIYGP-KGVGALYM  270 (457)
Q Consensus       201 ~i~~~~~~~G~-~~~---l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~--~~~~~~Di~~~s~~K~~g~-~G~G~l~~  270 (457)
                      +++++++++|. ..|   +++|.++|++||+++|+|++++ ++..  ...  .....+|+++  ++|.+|+ -.+|++++
T Consensus       187 ii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t--~sK~~~~G~rig~~~~  264 (396)
T PRK02627        187 MLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKLFAYQHYGIEPDIMT--LAKGLGGGVPIGAVLA  264 (396)
T ss_pred             EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCceeeehhcCCCCCEEE--EcchhhCCcccEEEEE
Confidence            99999999995 433   8899999999999999999987 3321  111  1122457654  6696663 24899999


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEEeCCCC
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGVVVNGSME  347 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  347 (457)
                      +++..+.+......       .....++..++++.++++....  +...++.+++.+++++.|.+.   ++.+....   
T Consensus       265 ~~~~~~~~~~~~~~-------~t~~~~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---  332 (396)
T PRK02627        265 KEKVADVFTPGDHG-------STFGGNPLACAAALAVIEIIEE--EGLLENAAEVGEYLRAKLRELLEKYPGIKEVR---  332 (396)
T ss_pred             cHHHHhccCCCCCC-------CCCCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeec---
Confidence            87765555432111       1113455666666677776554  334455555666665555441   22222111   


Q ss_pred             CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          348 RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                       ..+.++.+.+. .+...+...+  +||.+.++.                       .+++||+++..++++++++++++
T Consensus       333 -~~g~~~~i~~~-~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~lRi~~~~~~~~~~i~~~~~~  387 (396)
T PRK02627        333 -GLGLMIGIELD-RPAAEIVKKALEKGLLINVTG-----------------------DNVLRLLPPLIISKEEIDEAVDR  387 (396)
T ss_pred             -cCcEEEEEEec-CcHHHHHHHHHHCCeEEeecC-----------------------CCEEEEECCcccCHHHHHHHHHH
Confidence             12344444442 3445566555  588776532                       16899999888899999999999


Q ss_pred             HHHHHHHH
Q 040741          426 TVKQVEKL  433 (457)
Q Consensus       426 l~~~~~~~  433 (457)
                      |+++++++
T Consensus       388 l~~~l~~~  395 (396)
T PRK02627        388 LEEVLKEL  395 (396)
T ss_pred             HHHHHHhh
Confidence            99988754

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.88  E-value=1e-20  Score=183.81  Aligned_cols=267  Identities=15%  Similarity=0.063  Sum_probs=185.5

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCC
Q 040741          104 ETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI  183 (457)
Q Consensus       104 ~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~  183 (457)
                      .++++.+++++|.  +++++|+|+++++.+++  ..    .+|++|++..+.|+.+...++..   |.+++.++.+    
T Consensus        52 ~~Lr~~ia~~~~~--~~I~it~Gs~~al~~~~--~~----~~gd~v~v~~P~y~~~~~~~~~~---g~~~~~v~~~----  116 (330)
T PRK05664         52 DGLEAAARAYYGA--PQLLPVAGSQAAIQALP--RL----RAPGRVGVLSPCYAEHAHAWRRA---GHQVRELDEA----  116 (330)
T ss_pred             HHHHHHHHHHhCC--CCEEECcCHHHHHHHHH--Hc----cCCCEEEEcCCChHHHHHHHHHc---CCeEEEechh----
Confidence            5789999999985  47999999999998864  23    68999999999999998887776   9999988753    


Q ss_pred             CCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--c-ccCCCCcccEEEeccc
Q 040741          184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--P-VDVEKWNVSLMSLSGH  257 (457)
Q Consensus       184 ~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--~-~~~~~~~~Di~~~s~~  257 (457)
                          +++++++ +++++++++|+||||.+.+   +++|+++|+++|++||+|+++.-...  + ......+.-+++.|++
T Consensus       117 ----~~~~~~~-~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~~~~~~~~~vi~~~SfS  191 (330)
T PRK05664        117 ----EVEAALD-SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHSLAACAHRPGLIVLRSFG  191 (330)
T ss_pred             ----hHhhhhc-CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCcccccccccCCCEEEEeecc
Confidence                4555554 6778889999999999998   55566677899999999999863321  1 1222222347889999


Q ss_pred             cccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          258 KIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       258 K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      |.+|.+|  +||++++++.++++......         ...+.....++..++... ...++.+++++++++++.+.|++
T Consensus       192 K~~gl~GlRiG~~v~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~r~~l~~~L~~  261 (330)
T PRK05664        192 KFFGLAGARLGFVLAEPALLRALAELLGP---------WTVSGPTRWLAQAALADT-PWQRRQRERLLAASQRLAALLRR  261 (330)
T ss_pred             ccccCCCcceEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            9888655  99999987766655443221         123334444444455321 23466778888889999999988


Q ss_pred             cCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741          336 KLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF  413 (457)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~  413 (457)
                       + ++...    .....  .++++..+...+...+  +||.+..   +.                   ..++|||+++. 
T Consensus       262 -~-~~~~~----~~~~~--f~~~~~~~~~~~~~~l~~~gi~v~~---f~-------------------~~~~iRis~~~-  310 (330)
T PRK05664        262 -H-GLTPA----GGCAL--FQWVRTEDAAALHEFLARRGILTRL---FE-------------------QPASLRFGLPA-  310 (330)
T ss_pred             -C-CCccc----CCcce--EEEEecCCHHHHHHHHHHCCeEEEE---CC-------------------CCCeEEEECCC-
Confidence             4 43221    11122  3333333456666666  6888852   11                   11699999985 


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 040741          414 TTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       414 ~t~edid~~~~~l~~~~~~  432 (457)
                       +.++.+++.++|++..++
T Consensus       311 -~~~~~~~l~~al~~~~~~  328 (330)
T PRK05664        311 -DEADWARLDQALLAYRKE  328 (330)
T ss_pred             -CHHHHHHHHHHHHHHHhh
Confidence             578888888888766543

>PRK08637 hypothetical protein; Provisional

Probab=99.88  E-value=6.7e-21  Score=189.45  Aligned_cols=297  Identities=16%  Similarity=0.094  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHh-----CCCC---CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741          101 VAVETARSQIADLI-----GASP---KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus       101 ~~~~~~~~~la~~~-----g~~~---~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      ....++++.+++++     ...+   +++++|+|+++++.+++.++.    ++||.|++..+.|+.+...+..  ..|.+
T Consensus        44 ~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~----~~gd~Vlv~~P~y~~~~~~~~~--~~g~~  117 (388)
T PRK08637         44 QGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFV----DQGDTVLLPDHNWGNYKLTFNT--RRGAE  117 (388)
T ss_pred             CCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHHH--hcCCE
Confidence            34566777777655     2222   468999999999999999988    8999999999999998875432  13999


Q ss_pred             EEEEeCC-CCCCCCHHHHHHhcC----CCceEEEEeccccccccccC---hHHHHHHHHh-----cCCcEEEehhhhcCC
Q 040741          173 ITYLPVG-ADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQP---MEEIGQICKE-----FKIPFHTDAAQALGK  239 (457)
Q Consensus       173 v~~v~~~-~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~-----~~v~li~D~a~~~g~  239 (457)
                      ++.++.. +++.+|+++++++++    +.+.+++++++|||||.+.+   +++|+++|++     |+++||+|+++.--.
T Consensus       118 vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~~l~  197 (388)
T PRK08637        118 IVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYFGLF  197 (388)
T ss_pred             EEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccchhcc
Confidence            9999983 455689999999876    55677888899999999988   5667777765     899999999986321


Q ss_pred             ----Cccc----C-CCC-ccc-EEEeccccccCCCC--ceEEEEec------CCCccccccccCCccccccccCCCChhH
Q 040741          240 ----IPVD----V-EKW-NVS-LMSLSGHKIYGPKG--VGALYMRR------RPRIRVEPLINGGGQERGIRSGTLPTPL  300 (457)
Q Consensus       240 ----~~~~----~-~~~-~~D-i~~~s~~K~~g~~G--~G~l~~~~------~~~~~~~~~~~~~~~~~~~~~~t~~~~~  300 (457)
                          ....    . ... ++. +.+.|++|.|+.+|  +||+++..      +..+++........   .......+...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~s~~~  274 (388)
T PRK08637        198 YEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLI---RSNISNGPHPS  274 (388)
T ss_pred             cCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHHHHHHHHHHHHHh---hcccCCCCcHH
Confidence                1101    0 111 121 22348999766555  99998753      33333322110000   00111334444


Q ss_pred             HHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccchHHHhcc---cC
Q 040741          301 IVGFGSACEI--AKKEMDYDHKRITALHDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KE  372 (457)
Q Consensus       301 ~~al~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~  372 (457)
                      ..++..+++.  ....+.+.+..+++..+.+.+.|.+ .   +++.+..+. .  +.++.+.++..+..++...+   +|
T Consensus       275 q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~-~~~~~~~~~~~~~-~--g~~~~~~l~~~~~~~l~~~l~~~~g  350 (388)
T PRK08637        275 QSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYD-GKYDDAWQAYPFN-S--GYFMCLKLKGVDAEELRVHLLEKYG  350 (388)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCccccccc-c--eEEEEecCChHHHHHHHHHHhhhcc
Confidence            4444445431  1223445555667777777777766 3   134444321 1  22333344433456666665   37


Q ss_pred             eEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          373 VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       373 i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      |.+...                       .++++||+++. .+.++++.++++|.++++.++
T Consensus       351 v~~~~~-----------------------~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~~  388 (388)
T PRK08637        351 IGTIAL-----------------------NETDLRIAFSC-VEEEDIPELFDSIYKAIKDLR  388 (388)
T ss_pred             eEEEec-----------------------cCCceEEEeec-CCHHHHHHHHHHHHHHHHhcC
Confidence            766421                       12689999987 568999999999999998653

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.88  E-value=6.7e-21  Score=169.85  Aligned_cols=317  Identities=17%  Similarity=0.172  Sum_probs=222.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      -.|++.++-.+.++++...+.+.....|+.  +.+..+++.+|+|-+-++  .++.+++-.|+..++.++.    .|.+.
T Consensus        82 shPeii~a~~~aleeyGaGlssvrfIcGtq--~iHk~LE~kiAqfh~rED--~ilypscfdANag~feail----~pedA  153 (417)
T KOG1359|consen   82 SHPEIINAGQKALEEYGAGLSSVRFICGTQ--DIHKLLESKIAQFHGRED--TILYPSCFDANAGAFEAIL----TPEDA  153 (417)
T ss_pred             CChHHHHHHHHHHHHhCCCccceeEEecch--HHHHHHHHHHHHHhCCCc--eEEeccccccchHHHHHhc----Chhhh
Confidence            357888888888876544455434444444  789999999999999765  8888999999988888888    89999


Q ss_pred             EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc----CCCceEEEEeccccccccccChHHHHHHHHh
Q 040741          149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI----RPDTGLISVMAVNNEIGVIQPMEEIGQICKE  224 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i----~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~  224 (457)
                      |+.+..+|.+..+.++.+++.            +.+|+-+++..+    +-+-++|....+.++-|-+.|+++|.+++++
T Consensus       154 vfSDeLNhASIIdGirLckry------------~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaPl~ei~~La~k  221 (417)
T KOG1359|consen  154 VFSDELNHASIIDGIRLCKRY------------RHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAPLEEISQLAKK  221 (417)
T ss_pred             hhccccccchhhhhhHHHhhh------------ccchhHHHHHHHHHhhhheEEEEEecceeccCCCcccHHHHHHHHHh
Confidence            999999999999999988532            234555555433    4466899999999999999999999999999


Q ss_pred             cCCcEEEehhhhcCCCcc-------cCC-CCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          225 FKIPFHTDAAQALGKIPV-------DVE-KWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       225 ~~v~li~D~a~~~g~~~~-------~~~-~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ||.++++|++|+-|....       .+. ...+|++..++.|..| ..| |+..++++++.-++.....+     +.+.+
T Consensus       222 YgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttgp~~li~llrqr~Rpy-----lFSns  295 (417)
T KOG1359|consen  222 YGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTGPKPLISLLRQRSRPY-----LFSNS  295 (417)
T ss_pred             cCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccCChhHHHHHHhcCCce-----eecCC
Confidence            999999999998543311       111 1258999999999554 665 99998877654333221111     22334


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cC
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KE  372 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~  372 (457)
                      .++.......+++...+. -.....+.+.+.+++++..+.  .|+.+-+..    .++..+.+.+. -...+.+.|  +|
T Consensus       296 lppavV~~a~ka~dllm~-s~~~i~~~~a~~qrfr~~me~--aGftIsg~~----hPI~pv~lGda~lA~~~ad~lLk~G  368 (417)
T KOG1359|consen  296 LPPAVVGMAAKAYDLLMV-SSKEIQSRQANTQRFREFMEA--AGFTISGAS----HPICPVMLGDARLASKMADELLKRG  368 (417)
T ss_pred             CChhhhhhhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHh--cCceecCCC----CCccceecccHHHHHHHHHHHHhcC
Confidence            554444444455555443 256677788888899888877  799988743    22222222211 122333333  68


Q ss_pred             eEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          373 VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       373 i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      |.+..-+....                +.+.-+||+-++..+|+||||++++++.++.+.++
T Consensus       369 i~Vigfs~PvV----------------P~gkariRVqiSAaHt~edid~~i~Af~~vgr~~~  414 (417)
T KOG1359|consen  369 IYVIGFSYPVV----------------PKGKARIRVQISAAHTEEDIDRLIEAFSEVGRFLN  414 (417)
T ss_pred             ceEEeecCCcC----------------CCCceEEEEEEehhcCHHHHHHHHHHHHHHHHhhc
Confidence            77764333221                22346899999999999999999999999987654

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.88  E-value=5.2e-21  Score=187.44  Aligned_cols=302  Identities=14%  Similarity=0.148  Sum_probs=204.3

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHH-HHHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSC-RHLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~-~~~~~~G~  171 (457)
                      +.|++...+...++++.++++.|.+.  ++.+++|+.|+.+++.++.    ++||+||++...|....... ..+...|+
T Consensus        56 ~~Y~r~~~P~~~~lE~~la~leg~~~--av~~sSG~aAi~~al~all----~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi  129 (384)
T PRK06434         56 YIYTRWGNPTVQAFEEKYAVLENAEH--ALSFSSGMGAITSAILSLI----KKGKRILSISDLYGQTFYFFNKVLKTLGI  129 (384)
T ss_pred             cceeCCCChhHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHh----CCCCEEEEecCccchHHHHHHHHHHhcCc
Confidence            34444455889999999999999865  8899999999999999987    89999999877666666544 34456699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCccc
Q 040741          172 EITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVS  250 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~D  250 (457)
                      ++++++++....++       +++ ++++|+++++.||++.+.|+++|.++|++++  +++|++++.+... ..-..++|
T Consensus       130 ~v~fvd~~~~~~~~-------l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~~-~pl~~gaD  199 (384)
T PRK06434        130 HVDYIDTDRLNSLD-------FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYNQ-NPLDLGAD  199 (384)
T ss_pred             EEEEECCCChhhee-------ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCcccC-CchhcCCC
Confidence            99999987322222       333 6899999999999999999999999999998  5679998655331 12245799


Q ss_pred             EEEeccccccC-CCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHH
Q 040741          251 LMSLSGHKIYG-PKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITAL  325 (457)
Q Consensus       251 i~~~s~~K~~g-~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~  325 (457)
                      ++++|.+|+++ +.+  .|+++.+++ ..+++.......+       ...+...     +++-. -.+.++.++++..++
T Consensus       200 ivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G-------~~~~~~~-----A~l~~~gL~tL~~R~~r~~~~  267 (384)
T PRK06434        200 VVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLG-------SNPDPIQ-----AYLALRGLKTLGLRMEKHNKN  267 (384)
T ss_pred             EEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcC-------CCCCHHH-----HHHHHhCCCcHHHHHHHHHHH
Confidence            99999999654 443  577766543 2233332211111       1222211     11111 112478888999999


Q ss_pred             HHHHHHHHhhcCCCeE-EeCCC-------CCcccceEEEEEccc-cchHHHhccc--CeEecccCccC----CCCCChh-
Q 040741          326 HDRLLNGIKEKLDGVV-VNGSM-------ERRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSACT----SASLEPS-  389 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~-~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~----~~~~~~~-  389 (457)
                      +..+.+.|++ .|.+. |+-+.       -...++++.|.+.+. ....++..|+  .++++-|...+    +....+. 
T Consensus       268 a~~~a~~L~~-~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~~~~~~f~~~l~l~~~~~slG~~~sl~~~p~~~~h~~  346 (384)
T PRK06434        268 GMELARFLRD-SKKISNVYYPDTEIGKKVLRGFGGMLSFELRSMEDVHKFIRNLEIPMVAASLGGVESLITLPVETSHSS  346 (384)
T ss_pred             HHHHHHHHHc-CCCccEEECCChHHHHHhcCCCCceEEEEECCHHHHHHHHHhCCcceEccCCCCCCeeeECCCcccccc
Confidence            9999999999 77763 22211       124577888888642 2235555554  45555565422    2222111 


Q ss_pred             ---HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          390 ---YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       390 ---~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                         -.....|+.+    +.|||+++.    ||++.+++.|+++++
T Consensus       347 ~~~e~~~~~gi~~----~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        347 LSPEERERLGISD----NLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             CCHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHhc
Confidence               1234567665    899999997    788889999888875

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=99.88  E-value=7.1e-20  Score=181.47  Aligned_cols=329  Identities=16%  Similarity=0.153  Sum_probs=206.2

Q ss_pred             CCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+      -+...|++.+++.+.+.... ++..   .   ...+...++.+.+.+..+.  +.++|++||++
T Consensus        34 dG~~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~-~~~~---~---~~~~~~~~la~~l~~~~~~--~~v~f~~SGse  104 (395)
T PRK03715         34 NGKRYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI-NPSP---A---FYNEPMAKLAGLLTQHSCF--DKVFFANSGAE  104 (395)
T ss_pred             CCCEEEECCcChhhccCCCCCHHHHHHHHHHHHhcc-cccc---c---ccCHHHHHHHHHHhhccCC--CEEEEeCCcHH
Confidence            3456788754      23557999999999986532 1111   0   1113444555555554433  46999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC----CCCCHHHHHHhcCCCceEEE
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD----GIVNLDELRAAIRPDTGLIS  201 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~----~~~d~~~le~~i~~~t~li~  201 (457)
                      |++.+++.+..+..    ++.+.|......|.+...++......+.+..+.|...+    ...|++++++.+.+++++|+
T Consensus       105 A~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~aavi  184 (395)
T PRK03715        105 ANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITDKTVAVM  184 (395)
T ss_pred             HHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCCCceEEE
Confidence            99999998875421    12234455666788877776554221111111111111    12488999999988899999


Q ss_pred             EeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCCcccEEEecccccc-CCCCceEEEEe
Q 040741          202 VMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKWNVSLMSLSGHKIY-GPKGVGALYMR  271 (457)
Q Consensus       202 i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~  271 (457)
                      ++.+++..|.+.|    +++|.++|++||+++|+|++++ +|...    .......+|+++++  |.+ |...+|+++++
T Consensus       185 ~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~g--K~lg~G~p~~av~~~  262 (395)
T PRK03715        185 LEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLG--KGIGGGVPLAALLAK  262 (395)
T ss_pred             EeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhhcCCCCceeeeh--hhhhCCcceEEEEEc
Confidence            9999999999887    9999999999999999999987 22211    11112247887665  943 33347888888


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC---CCeEEeCCCCC
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL---DGVVVNGSMER  348 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~  348 (457)
                      ++... +.+...+      ..+ ..++..+++..++++.+++  +...++.+++.+++++.|++ +   .++.   + ..
T Consensus       263 ~~i~~-~~~~~~~------~T~-~g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~-l~~~~~i~---~-vr  327 (395)
T PRK03715        263 AEVAV-FEAGDQG------GTY-NGNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLLE-LSEERGLE---G-ER  327 (395)
T ss_pred             ccccc-ccCCCcC------CCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHH-HhhcCCcC---e-EE
Confidence            76532 1111111      111 3456667777778888765  56777888888888888775 2   1221   1 11


Q ss_pred             cccceEEEEEccccchHHHhcc-----cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          349 RYIGNLNLSFAYVEGESLLMGL-----KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l-----~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                      ..+.++.+.+.......+...+     +|+.+...                       ....|||.++..+|++|||+++
T Consensus       328 G~Glm~~i~l~~~~~~~~~~~~~~~~~~Gi~~~~~-----------------------~~~~lR~~p~l~~t~~ei~~~~  384 (395)
T PRK03715        328 GEGLLRALLLGKDIGPQIVEKARDMQPDGLLLNAP-----------------------RPNLLRFMPALNVTTEEIDQMI  384 (395)
T ss_pred             cceeEEEEEecCchHHHHHHHHHhccCCCEEEeec-----------------------CCCEEEEeCCcccCHHHHHHHH
Confidence            2244455555422122222222     26655311                       1168999999999999999999


Q ss_pred             HHHHHHHHHH
Q 040741          424 ELTVKQVEKL  433 (457)
Q Consensus       424 ~~l~~~~~~~  433 (457)
                      ++|+++++++
T Consensus       385 ~~l~~~l~~~  394 (395)
T PRK03715        385 AMLRSVLDKL  394 (395)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=99.88  E-value=2.8e-20  Score=185.79  Aligned_cols=323  Identities=17%  Similarity=0.207  Sum_probs=213.0

Q ss_pred             CcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.-      ..+|++.+++.+.+.... ...   ..  + ..+...++++++++++|.+  .++|+++|++|
T Consensus        36 g~~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~~-~~~---~~--~-~~~~~~~l~~~l~~~~~~~--~~~~~~SGs~A  106 (401)
T TIGR01885        36 GKRYLDFLSAYSAVNQGHCHPKIVKALTEQAQKLT-LSS---RA--F-YNDVFGEFAEYVTKLFGYD--KVLPMNTGAEA  106 (401)
T ss_pred             CCEEEEcccCHhhccCCCCCHHHHHHHHHHHHhcc-ccc---cc--c-CCHHHHHHHHHHHhhcCCC--EEEEeCccHHH
Confidence            33477775532      248999999999987531 111   11  1 2367788999999999864  59999999999


Q ss_pred             HHHHHHHhhhhhc------CCCCEEEEcCCC-CcchHHHHHHHHh------cC---cEEEEEeCCCCCCCCHHHHHHhcC
Q 040741          131 NNVSIKGVMHFYK------DKKRHVITTQTE-HKCVLDSCRHLQQ------EG---FEITYLPVGADGIVNLDELRAAIR  194 (457)
Q Consensus       131 ~~~al~~~~~~~~------~~g~~vi~~~~~-h~~~~~~~~~~~~------~G---~~v~~v~~~~~~~~d~~~le~~i~  194 (457)
                      +..+++.+..+..      ..++.|+..... |.+...++.....      .|   ..+..++.+     |+++++++++
T Consensus       107 ~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~  181 (401)
T TIGR01885       107 VETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALE  181 (401)
T ss_pred             HHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHH
Confidence            9999998764321      235677777766 4455665543311      11   122333332     7899998885


Q ss_pred             ---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCC--Cc--ccCCCCcccEEEeccccccCC
Q 040741          195 ---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGK--IP--VDVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       195 ---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~--~~--~~~~~~~~Di~~~s~~K~~g~  262 (457)
                         ++...|+++.+++++|.+.|    +++|.++|++||+++|+|++|. +|.  ..  .....+.+|++++|  |.++.
T Consensus       182 ~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~g--K~l~~  259 (401)
T TIGR01885       182 DHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLG--KALSG  259 (401)
T ss_pred             hcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHHhhcCCCCCEEEee--ccccC
Confidence               45678889999999999988    9999999999999999999985 321  11  11223457887665  95443


Q ss_pred             --CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          263 --KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       263 --~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                        ..+|+++.+++..+.+.....+      ... +.++..++++.++++.+.++  ...++.+++.+++++.|++ +. .
T Consensus       260 g~~~ig~v~~~~~i~~~~~~~~~~------~t~-~~~p~~~~aa~a~L~~i~~~--~l~~~~~~~~~~~~~~L~~-l~-~  328 (401)
T TIGR01885       260 GVYPVSAVLADDDVMLTIKPGEHG------STY-GGNPLACAVAVAALEVLEEE--KLAENAEKLGEIFRDQLKK-LP-K  328 (401)
T ss_pred             CCCCcEEEEEcHHHHhhccCCCCC------CCC-CCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHh-cc-C
Confidence              2388899887655554432111      111 34566677777788877652  4557788889999999988 53 1


Q ss_pred             EEeCCCCCcccceEEEEEccc----cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          341 VVNGSMERRYIGNLNLSFAYV----EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                      .++.+. ...+.+..+.+...    ....+...|  +||.+.++.                       .+.+||+++..+
T Consensus       329 ~~~~~~-~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~-----------------------~~~lRi~p~l~~  384 (401)
T TIGR01885       329 PIITEV-RGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTH-----------------------GNIIRLAPPLVI  384 (401)
T ss_pred             CceeEE-eecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecC-----------------------CCEEEEeCCccC
Confidence            222111 11244444445322    234555555  577764321                       278999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQV  430 (457)
Q Consensus       415 t~edid~~~~~l~~~~  430 (457)
                      +++||++++++|++++
T Consensus       385 t~~~i~~~l~~l~~~l  400 (401)
T TIGR01885       385 TEEQLDEGLEIIKKVI  400 (401)
T ss_pred             CHHHHHHHHHHHHHHh
Confidence            9999999999999876

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=99.88  E-value=7.3e-20  Score=181.49  Aligned_cols=319  Identities=18%  Similarity=0.205  Sum_probs=200.5

Q ss_pred             CcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+.      +..+|++.+++.+.+...... ..   .   ...+...++.+.+++..+.  +.++|++||++|
T Consensus        28 G~~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~---~---~~~~~~~~la~~l~~~~~~--~~~~~~~sG~~a   98 (377)
T PRK02936         28 GKTYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWHV-SN---L---FTNSLQEEVASLLAENSAG--DLVFFCNSGAEA   98 (377)
T ss_pred             CCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcccc-cc---c---cCCHHHHHHHHHHHhcCCC--CEEEEeCCcHHH
Confidence            3457776554      357899999999998763211 10   0   0124555566666665553  359999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEE-EcCCCCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHHHHHhcCCCceEE
Q 040741          131 NNVSIKGVMHFYKDKKRHVI-TTQTEHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDELRAAIRPDTGLI  200 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi-~~~~~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~le~~i~~~t~li  200 (457)
                      ++.+++.... + ..++.|+ .....|.+.............         .+..++.+     |++++++.+.+++++|
T Consensus        99 ~~~A~~~a~~-~-~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~~i  171 (377)
T PRK02936         99 NEAALKLARK-H-TGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNEEVAAV  171 (377)
T ss_pred             HHHHHHHHHH-h-cCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccCCeEEE
Confidence            9999996542 2 2234454 455677777666543311111         12223322     7999999999899999


Q ss_pred             EEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccC--CCCcccEEEeccccccCCC-CceEEEE
Q 040741          201 SVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDV--EKWNVSLMSLSGHKIYGPK-GVGALYM  270 (457)
Q Consensus       201 ~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~--~~~~~Di~~~s~~K~~g~~-G~G~l~~  270 (457)
                      +++.++++.|...+    +++|.++|++||+++|+|++|. +|..  .+..  ....+|++  +++|.+|+. .+|+++.
T Consensus       172 i~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~  249 (377)
T PRK02936        172 MLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIG  249 (377)
T ss_pred             EEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEE
Confidence            99999998887743    9999999999999999999986 2211  1111  12235765  567976631 2799998


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEEeCCCC
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGVVVNGSME  347 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  347 (457)
                      +++..+.+......      ... ..++..++++.++++....  +...++.+++.+++++.|.+.   ++.+..+.   
T Consensus       250 ~~~~~~~~~~~~~~------~t~-~~~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~---  317 (377)
T PRK02936        250 KKELGTAFGPGSHG------STF-GGNPLAMAAAKEVLQVIKQ--PSFLEEVQEKGEYFLQKLQEELEHLECVKNIR---  317 (377)
T ss_pred             cHHHHhhccCCCCC------CCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEe---
Confidence            87765555432211      111 3566677777778877643  344456666666666666552   33322111   


Q ss_pred             CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          348 RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                       ..+.++.+.+.. +...+...+  +||.+.++.                       .+.|||+++..++++++++++++
T Consensus       318 -~~g~~~~i~~~~-~~~~~~~~l~~~gv~v~~~g-----------------------~~~lRi~p~~~~~~~~i~~~i~~  372 (377)
T PRK02936        318 -GKGLMIGIECTE-EVAPVIEQLREEGLLVLSAG-----------------------PNVIRLLPPLVVTKEELDQAVYL  372 (377)
T ss_pred             -ecceEEEEEecc-hHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcccCHHHHHHHHHH
Confidence             113344455542 234455444  577765421                       26899999888999999999999


Q ss_pred             HHHHH
Q 040741          426 TVKQV  430 (457)
Q Consensus       426 l~~~~  430 (457)
                      |++++
T Consensus       373 l~~~~  377 (377)
T PRK02936        373 LKKVL  377 (377)
T ss_pred             HHHhC
Confidence            98753

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=99.88  E-value=9.9e-20  Score=181.81  Aligned_cols=330  Identities=14%  Similarity=0.160  Sum_probs=207.8

Q ss_pred             CCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+      -+...|++.+|+.+.+........      ++ ..+...++.+.|+++++.  +.++|++||++
T Consensus        37 dG~~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~------~~-~~~~~~~la~~l~~~~~~--~~v~~~~sGse  107 (406)
T PRK12381         37 QGKEYIDFAGGIAVNALGHAHPALREALNEQASKFWHTGN------GY-TNEPVLRLAKKLIDATFA--DRVFFCNSGAE  107 (406)
T ss_pred             CCCEEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccccC------cc-CCHHHHHHHHHHHhhCCC--CeEEEcCCcHH
Confidence            4445788755      235689999999999875322111      11 124567899999998865  46999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEE-cCCCCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHHHHHhcCC
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVIT-TQTEHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDELRAAIRP  195 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~-~~~~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~le~~i~~  195 (457)
                      |++.+++....+..    ..+..|+. ....|.....+.........         .+..++     ..|++++++.+++
T Consensus       108 A~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~  182 (406)
T PRK12381        108 ANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAA-----YNDLNSASALIDD  182 (406)
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcCCcccccCCCCCCCCeeEeC-----CCCHHHHHHhccC
Confidence            99999998765431    13455655 44556665544433211101         112222     2389999999988


Q ss_pred             CceEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--ccc--CCCCcccEEEeccccccC-CCCc
Q 040741          196 DTGLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PVD--VEKWNVSLMSLSGHKIYG-PKGV  265 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~--~~~~~~Di~~~s~~K~~g-~~G~  265 (457)
                      ++++|+++.++...|.+.    .+++|.++|++||+++|+|++|. +|..  .+.  .....+|++  +++|.+| .-.+
T Consensus       183 ~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~--t~sK~l~gG~~i  260 (406)
T PRK12381        183 QTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDVL--TTAKALGGGFPI  260 (406)
T ss_pred             CeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCcchhhhHhhCCCCCEE--EehhhhhCCCce
Confidence            899999987655455443    28899999999999999999984 3221  111  112246765  6669554 2338


Q ss_pred             eEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeC
Q 040741          266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD-GVVVNG  344 (457)
Q Consensus       266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~  344 (457)
                      |+++++++..+.+.....+      .. ...++..+++..++++.+.+  +...++.+++.+++.+.|++ +. .+.+..
T Consensus       261 g~~~~~~~~~~~~~~~~~~------~t-~~~~pl~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L~~-l~~~~~~~~  330 (406)
T PRK12381        261 GAMLTTEKCASVMTVGTHG------TT-YGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNT-INARYGLFS  330 (406)
T ss_pred             EEEEEcHHHHhhcCCCCCC------CC-CCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHH-HHhhCCCEE
Confidence            9999988766655432211      11 13456667767777777654  45778888888888888877 31 111111


Q ss_pred             CCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          345 SMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      +. ...+.++.+.+...   ....+...+  +||.+...                       +.+.|||+++..++++||
T Consensus       331 ~v-rg~Gl~~~~~l~~~~~~~~~~~~~~l~~~Gv~v~~~-----------------------g~~~lRl~p~~~~t~~~i  386 (406)
T PRK12381        331 EI-RGLGLLIGCVLNAEYAGKAKQISQEAAKAGVMVLIA-----------------------GPNVVRFAPALNISEEEI  386 (406)
T ss_pred             EE-ecCeEEEEEEecCchhhHHHHHHHHHHHCCcEEeeC-----------------------CCCEEEEeCCccCCHHHH
Confidence            11 11133333333321   123444444  57776421                       116899999998999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q 040741          420 DRAIELTVKQVEKLRE  435 (457)
Q Consensus       420 d~~~~~l~~~~~~~~~  435 (457)
                      |+++++|+++++++..
T Consensus       387 ~~~~~~l~~~l~~~~~  402 (406)
T PRK12381        387 TTGLDRFARACERFVS  402 (406)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999987643

>PLN02624 ornithine-delta-aminotransferase

Probab=99.87  E-value=5.7e-20  Score=186.13  Aligned_cols=325  Identities=14%  Similarity=0.143  Sum_probs=204.6

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +...|++.+++.+.+.+.. ...+   .   -..+...++.+.|+++++.+  .++|+++|++
T Consensus        73 dG~~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~-~~~~---~---~~~~~~~~la~~L~~~~~~~--~~~f~~SGse  143 (474)
T PLN02624         73 EGKKYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLT-LSSR---A---FYNDKFPEFAEYLTSMFGYD--MVLPMNTGAE  143 (474)
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhcC-Cccc---c---cCCHHHHHHHHHHHhhcCCC--eEEEeCChHH
Confidence            44467887543      2458999999999997642 1111   0   11256778999999998754  5999999999


Q ss_pred             HHHHHHHHhhhhh-cC---C-C-CEEEEcCC-CCcchHHHHHHHHhc----Cc-----EEEEEeCCCCCCCCHHHHHHhc
Q 040741          130 SNNVSIKGVMHFY-KD---K-K-RHVITTQT-EHKCVLDSCRHLQQE----GF-----EITYLPVGADGIVNLDELRAAI  193 (457)
Q Consensus       130 a~~~al~~~~~~~-~~---~-g-~~vi~~~~-~h~~~~~~~~~~~~~----G~-----~v~~v~~~~~~~~d~~~le~~i  193 (457)
                      |++.|++....+. ..   + + ..|+.... .|.....+.......    ++     .+..++.+     |++.+++.+
T Consensus       144 A~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l  218 (474)
T PLN02624        144 GVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIF  218 (474)
T ss_pred             HHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHH
Confidence            9999999665431 11   1 2 34555444 455444443321100    10     12233322     789999888


Q ss_pred             C---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccC
Q 040741          194 R---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYG  261 (457)
Q Consensus       194 ~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g  261 (457)
                      +   +++++|+++.+++++|.+.|    +++|.++|++||+++|+|++|. +|..    ..+.....+|++++|  |.+|
T Consensus       219 ~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~ls--K~lg  296 (474)
T PLN02624        219 EEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILG--KALG  296 (474)
T ss_pred             HhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEec--cccc
Confidence            5   45789999999999999988    9999999999999999999997 3311    112233457888765  9554


Q ss_pred             C--CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741          262 P--KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---  336 (457)
Q Consensus       262 ~--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---  336 (457)
                      .  ..+|+++++++....+.+...+      ... ..++..+++..++++.+.+  ..+.++..++.+++++.|.+.   
T Consensus       297 gG~~pigav~~~~~i~~~~~~~~~~------~T~-~g~pl~~aaa~aaLe~l~~--~~l~~~~~~~~~~l~~~L~~l~~~  367 (474)
T PLN02624        297 GGVIPVSAVLADKDVMLCIKPGEHG------STF-GGNPLASAVAMAALQVVQD--EKLAERSAKLGQELRDQLQKIQKQ  367 (474)
T ss_pred             CCCCcceeeeecHHHHhHhccCCcC------CCC-CCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHHHHh
Confidence            3  2489999887655444332211      111 3566667777778877654  234455556666666655441   


Q ss_pred             CCC-eEEeCCCCCcccceEEEEEccc-----cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          337 LDG-VVVNGSMERRYIGNLNLSFAYV-----EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       337 ~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      ++. +..+.    ..+.++.+.+...     ...++...|  +||.+.++.                       .+.|||
T Consensus       368 ~~~~i~~vr----g~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~-----------------------~~~lR~  420 (474)
T PLN02624        368 FPKLIKEVR----GRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTH-----------------------DTIIRL  420 (474)
T ss_pred             CCCceEEEE----eeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCC-----------------------CCEEEE
Confidence            332 21111    1133334444321     123444444  577765431                       278999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +++..++++||++++++|+++++.
T Consensus       421 ~p~l~~t~e~id~~l~~L~~~l~~  444 (474)
T PLN02624        421 APPLSISEDELQECSKALSDVLEH  444 (474)
T ss_pred             ECCccCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988754

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.87  E-value=9.3e-20  Score=182.87  Aligned_cols=339  Identities=15%  Similarity=0.138  Sum_probs=211.0

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|||+.+.      +..+|++.+++.+.+...... ..    .++ ..+...++.+.|.++++...+.+.|+++|++
T Consensus        40 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~----~~~-~~~~~~~la~~l~~~~p~~~~~v~f~~sGse  113 (423)
T PRK05964         40 DGRELIDAISSWWVATHGHNHPYIDQAIREQLDRLDHV-IF----AGF-THEPAERLAQRLVALTPGGLDHVFFSDSGSV  113 (423)
T ss_pred             CCCEEEEcchhHHhccCCCCCHHHHHHHHHHHhhCCCc-cc----ccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcHH
Confidence            45568887543      356899999999998753211 00    011 1245567888888887533456999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHH-HhcC---------cEEEEEeCCCC--CCCCHHHHHHhc
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHL-QQEG---------FEITYLPVGAD--GIVNLDELRAAI  193 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~-~~~G---------~~v~~v~~~~~--~~~d~~~le~~i  193 (457)
                      |++.|++..+.+..    ..+.+||.....|.+.......+ ....         ..+..++.+.+  ...+++++++.+
T Consensus       114 A~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l  193 (423)
T PRK05964        114 AVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALL  193 (423)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHH
Confidence            99999998775531    12456766555554444333322 1100         11233333321  112278888888


Q ss_pred             C---CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEecccccc
Q 040741          194 R---PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       194 ~---~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~  260 (457)
                      .   ++...|+++. ++...|...+    +++|.++|++||+++|+|++|. +|..  .+  ......+|+++++  |.+
T Consensus       194 ~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~--K~l  271 (423)
T PRK05964        194 EKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLS--KGL  271 (423)
T ss_pred             HhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeee--hhh
Confidence            4   4567888887 5777887775    8999999999999999999985 4321  11  2222357887655  954


Q ss_pred             -CC-CCceEEEEecCCCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          261 -GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       261 -g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                       |+ .++|+++.+++..+.+.... .+.  .....+  ..++..+++..++++.+++  +...++.+++.+++++.|++ 
T Consensus       272 ~gG~~p~~av~~~~~i~~~~~~~~-~~~--~~~~~~T~~~np~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~~-  345 (423)
T PRK05964        272 TGGYLPLAATLCTAEIFEAFYSDD-RAK--AFMHSPSYTANPLACAAANASLDLFED--EPVLERVAALSAGLAEGLEP-  345 (423)
T ss_pred             hcCcccceEEEEcHHHHHhhhcCC-ccc--ccccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHh-
Confidence             33 35899998877655543210 000  001112  3567777778788887765  35667888888888888876 


Q ss_pred             CCCeEEeCCCCCcccceEEEEEcccc----chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          337 LDGVVVNGSMERRYIGNLNLSFAYVE----GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      +.....+.+ ....+.++.+.+...+    ...+...+  +||.+.+.                        .+.|||++
T Consensus       346 l~~~~~i~~-vrg~Gl~~~i~l~~~~~~~~~~~l~~~l~~~Gv~v~~~------------------------~~~lR~~p  400 (423)
T PRK05964        346 FRDLPGVAD-VRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPL------------------------GNTIYLMP  400 (423)
T ss_pred             hccCCCeEE-eecccEEEEEEeccCcchhHHHHHHHHHHHCCeEEEec------------------------CCEEEEeC
Confidence            422211111 1122444555664322    23444444  57766431                        15899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +..+|++|||+++++++++++++
T Consensus       401 ~l~~t~edId~~v~~l~~al~~~  423 (423)
T PRK05964        401 PYIITAEELDRITDAIVEVADEL  423 (423)
T ss_pred             CcccCHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999998764

>PLN02368 alanine transaminase

Probab=99.87  E-value=5.4e-20  Score=182.55  Aligned_cols=228  Identities=16%  Similarity=0.177  Sum_probs=167.6

Q ss_pred             HHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEE
Q 040741          102 AVETARSQIADLI----G--ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY  175 (457)
Q Consensus       102 ~~~~~~~~la~~~----g--~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~  175 (457)
                      ...++|+.+++++    |  +++++|++|+|+++++.+++.++..   ++||.|++..+.|+.+...++..   |.+++.
T Consensus       108 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~---~pGd~Vli~~P~Y~~y~~~~~~~---g~~~v~  181 (407)
T PLN02368        108 GLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIR---GEKDGVLVPVPQYPLYSATISLL---GGTLVP  181 (407)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcC---CCCCEEEEeCCCCccHHHHHHHc---CCEEEE
Confidence            3445666666665    6  4678899999999999999988762   58999999999999999888776   999999


Q ss_pred             EeCCC--CCCCCHHHHHHhcCC------CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----
Q 040741          176 LPVGA--DGIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----  240 (457)
Q Consensus       176 v~~~~--~~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----  240 (457)
                      ++.+.  ++.+|++++++++++      +++++++++++||||.+++   +++|+++|++||++||+|++|.--..    
T Consensus       182 v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~y~~~~  261 (407)
T PLN02368        182 YYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNIYQDER  261 (407)
T ss_pred             EecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCC
Confidence            98864  357899999999874      6899999999999999988   66788889999999999999864221    


Q ss_pred             cc-c-------CC----CCcccEEEecccccc-CCCC--ceEEEE---ecCCCccccccccCCccccccccCCCChhHHH
Q 040741          241 PV-D-------VE----KWNVSLMSLSGHKIY-GPKG--VGALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIV  302 (457)
Q Consensus       241 ~~-~-------~~----~~~~Di~~~s~~K~~-g~~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  302 (457)
                      +. .       +.    ..+.-+++.|+||.| |.+|  +||+++   +++.++++.....       .. .+++.....
T Consensus       262 ~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~~-------~~-~~~~~~~Q~  333 (407)
T PLN02368        262 PFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVAS-------IA-LSPNVSGQI  333 (407)
T ss_pred             CcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHhc-------cc-CCCCcHHHH
Confidence            11 1       10    112347788999976 6555  899985   4444444433211       11 134555555


Q ss_pred             HHHHHHHH----------HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          303 GFGSACEI----------AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       303 al~~al~~----------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                      ++.++++.          ..+++.++.+.++++++.+.+.|.+ ++++.+..
T Consensus       334 aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~-~~g~~~~~  384 (407)
T PLN02368        334 FMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNS-CKNVVCNF  384 (407)
T ss_pred             HHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCeEeCC
Confidence            55566642          1223456778889999999999999 88987755

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=99.87  E-value=5.3e-19  Score=175.09  Aligned_cols=323  Identities=16%  Similarity=0.169  Sum_probs=201.7

Q ss_pred             CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHH
Q 040741           56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~  129 (457)
                      .+.-|+|+.+..     ...|++.+++.+.+.....++.           ....++++.+++.+...++ .++|++|||+
T Consensus        27 dg~~~lD~~s~~~~~~lG~~p~v~~a~~~~~~~~~~~~~-----------~~~~~~~~~la~~l~~~~~~~~~~~~SGse   95 (375)
T PRK04260         27 DGKKYLDFSSGIGVTNLGFHPQVQQALQKQAGLIWHSPN-----------LYLNSLQEEVAQKLIGDKDYLAFFCNSGAE   95 (375)
T ss_pred             CCCEEEECCCCcccccCCCCHHHHHHHHHHHHhcCcccC-----------ccCCHHHHHHHHHHhcCcCCEEEEcCccHH
Confidence            344577776541     2388999999999876433321           1234566677776543334 3789999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHHhc----CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec
Q 040741          130 SNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQQE----GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~~~----G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      |+..+++.+..+  .++++|++ ...+|.+...+.......    +..+........-..|++.+++++++++++|++++
T Consensus        96 A~~~Al~~ar~~--~~~~~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~~~~a~vi~e~  173 (375)
T PRK04260         96 ANEAAIKIARKA--TGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVNKNTAAVMLEL  173 (375)
T ss_pred             HHHHHHHHHHHh--cCCCeEEEECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcCCCeEEEEECC
Confidence            999999987643  23455555 566787777765443110    11000000000012489999999988889999999


Q ss_pred             cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--ccc--CCCCcccEEEeccccccCC-CCceEEEEecCC
Q 040741          205 VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVD--VEKWNVSLMSLSGHKIYGP-KGVGALYMRRRP  274 (457)
Q Consensus       205 ~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~--~~~~~~Di~~~s~~K~~g~-~G~G~l~~~~~~  274 (457)
                      +++++|.+.+    ++++.++|+++|+++++|++|. +|..  ...  .....+|++  |++|.+|+ -.+|+++++++.
T Consensus       174 v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~  251 (375)
T PRK04260        174 VQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSL  251 (375)
T ss_pred             eECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHH
Confidence            9999998866    8999999999999999999985 2211  111  122346765  66796653 238999999876


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      .+.+......       .....++..++++.++++....  .+++..+..+.+++.+.+.+.+ .+.+..+..    .+.
T Consensus       252 ~~~~~~~~~~-------~t~~~~~~~~~aa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~----~g~  319 (375)
T PRK04260        252 GGAFGYGSHG-------STFGGNKLSMAAASATLDIMLTAGFLEQALENGNYLQEQLQKALQD-KETVTTVRG----LGY  319 (375)
T ss_pred             HhhcCCCCCC-------CCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEEec----cce
Confidence            5554322111       1123455566666667766653  2444455555555555555555 333222211    244


Q ss_pred             eEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          353 NLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       353 ~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ++.+.+. .+...+...+  +||.+.+.                       ..+.+||+++..++++|+++++++++++
T Consensus       320 ~~~~~~~-~~~~~~~~~l~~~Gi~v~~~-----------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        320 MIGIETT-ADLSQLVEAARDKGLIVLTA-----------------------GTNVIRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             EEEEEec-CcHHHHHHHHHhCCCEEecC-----------------------CCCEEEEcCCCccCHHHHHHHHHHHHHh
Confidence            4445542 3345666665  67776432                       1168999999999999999999999875

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=99.87  E-value=7.2e-19  Score=171.67  Aligned_cols=338  Identities=14%  Similarity=0.143  Sum_probs=219.8

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~  127 (457)
                      ..+-.|||+.+.      +..+|.|.+|+.+++....-. +. .+    ...+...++.+.|.+++.. ..+.++|+++|
T Consensus        53 vdG~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~h~-~~-~~----~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sG  126 (447)
T COG0160          53 VDGNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLNHT-HT-RD----LYYEPYVELAEKLTALAPGSGLKKVFFGNSG  126 (447)
T ss_pred             CCCCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhhcc-cC-Cc----ccchhHHHHHHHHHHhCCcccCCeEEecCCc
Confidence            456678888772      257899999999998765311 11 11    1115667777888887776 45679999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHH-----hcC-----cEEEEEeCCCC--C----------CCC
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-----QEG-----FEITYLPVGAD--G----------IVN  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~-----~~G-----~~v~~v~~~~~--~----------~~d  185 (457)
                      |+|+++|++....+. ++...|......|.....+.....     ..|     -.+..+|-+..  +          .-.
T Consensus       127 aeA~E~AiKiAr~~T-gr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~  205 (447)
T COG0160         127 AEAVEAAIKIARAYT-GRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDA  205 (447)
T ss_pred             HHHHHHHHHHHHHHh-CCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHH
Confidence            999999999777543 444455556666777766655431     111     12455554411  1          112


Q ss_pred             HHHHHHhcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--ccc
Q 040741          186 LDELRAAIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVS  250 (457)
Q Consensus       186 ~~~le~~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~D  250 (457)
                      .+.+++.+.      .+.+.++++.++...|.+.|    ++++.++|++||+++|+|++|.....   .+.+..+  .+|
T Consensus       206 ~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PD  285 (447)
T COG0160         206 LEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPD  285 (447)
T ss_pred             HHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCC
Confidence            344555442      24789999999999999877    89999999999999999999973211   2223322  489


Q ss_pred             EEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          251 LMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       251 i~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +++++  | +.|.-.+|+++.+++..+ ..+...++.       ...|+..+++..+.++.+++  +.+.++..++.+++
T Consensus       286 ivt~a--K~ig~G~Pl~avv~r~ei~~-~~~g~~~~T-------f~GNpva~Aaa~AvL~vie~--e~L~~~a~~~G~~l  353 (447)
T COG0160         286 IVTLA--KSLGGGLPLSAVVGRAEIMD-WPPGGHGGT-------FGGNPVACAAALAVLDVIEE--ENLLERAAELGEYL  353 (447)
T ss_pred             EEEec--ccccCCCceeEEeccHHhcc-cCCcccCCC-------CCcCHHHHHHHHHHHHHHHH--ccHHHHHHHHHHHH
Confidence            99888  9 444444899999987655 333333221       24566677777778887776  47778888888888


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEccc-----cc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-----EG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      ++.|.+....+.++++. ...+-++.+.+...     ..    ..+...+  +|+.+....                 . 
T Consensus       354 ~~~L~~l~~~~~~IgdV-RG~Glm~giE~v~d~~t~~p~~~~~~~i~~~~~~~Glil~~~G-----------------~-  414 (447)
T COG0160         354 RDRLEELQEKHPLIGDV-RGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCG-----------------P-  414 (447)
T ss_pred             HHHHHHHHhhcCceecc-cccceEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCEEeccC-----------------C-
Confidence            88876522233344432 22344555555321     11    1223332  565543211                 1 


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                         ..+.|||.+....++|++|.+++.|++++++.
T Consensus       415 ---~~nviRi~PPL~is~e~~d~~l~il~~al~~~  446 (447)
T COG0160         415 ---HGNVLRILPPLTISDEELDEGLDILEEALKEA  446 (447)
T ss_pred             ---CCcEEEEeCCcccCHHHHHHHHHHHHHHHHhh
Confidence               12899999999999999999999999999864

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.86  E-value=2.4e-20  Score=177.28  Aligned_cols=302  Identities=15%  Similarity=0.140  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~  178 (457)
                      .+....+++.++++-|+..  ++..++|..|+..++..+.    ..+++++.....|......++.+ ...|.+..+++.
T Consensus        76 nPt~~~le~~iaal~ga~~--~l~fsSGmaA~~~al~~L~----~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~vd~  149 (409)
T KOG0053|consen   76 NPTRDVLESGIAALEGAAH--ALLFSSGMAAITVALLHLL----PAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFVDV  149 (409)
T ss_pred             CCchHHHHHHHHHHhCCce--EEEecccHHHHHHHHHHhc----CCCCcEEEeCCCcccHHHHHHHHHHHhCceeeeech
Confidence            4677789999999999865  8888889999999999999    89999999999999988877754 567999999988


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                      +     |++.+++++++++++|.++.|.||+..+.++++|+++||++|+++++|.+.+.+ .-.+.-.+|+||++-|.+|
T Consensus       150 ~-----~~~~~~~~i~~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p-~~~~pL~lGADIV~hSaTK  223 (409)
T KOG0053|consen  150 D-----DLKKILKAIKENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSP-YNQDPLPLGADIVVHSATK  223 (409)
T ss_pred             h-----hHHHHHHhhccCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcc-cccChhhcCCCEEEEeeee
Confidence            8     899999999999999999999999999999999999999999999999998876 3445566789999999999


Q ss_pred             ccCCCC---ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          259 IYGPKG---VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       259 ~~g~~G---~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      ++|.-.   .|.++++ .+...++......       ..+++++..+.-+...++    .+.-++++..+++..+...|+
T Consensus       224 yi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~-------lg~~~~p~~~~ll~Rglk----tl~lRi~~~~ena~~~A~~Le  292 (409)
T KOG0053|consen  224 YIGGHSDVIGGSVVLNSEELASRLKFLQED-------LGWCEDPFDLFLLSRGLK----TLHLRINKHSENALKIALLLE  292 (409)
T ss_pred             eecCCcceeeeEEecCcHHHHHHHHHHHHH-------hcCCCCHHHHHHHhcCcc----hhhhhHHHHHHHHHHHHHHhh
Confidence            766433   5777776 3333333333321       122555444443322221    244555666677777777887


Q ss_pred             hcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccCCCCC-------Chh
Q 040741          335 EKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACTSASL-------EPS  389 (457)
Q Consensus       335 ~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~-------~~~  389 (457)
                      . .|.++ ++-+  +.           ....+.+.+...+.  ...++...|+  -.+.+-|...+..+.       .+.
T Consensus       293 ~-~~~v~kv~YPgL~Shp~h~~~~~~~~g~~G~l~~~~~~~~~~a~kf~~~LK~~~~a~SlG~~eSL~~~p~~mth~~~~  371 (409)
T KOG0053|consen  293 A-HPKVKKVYYPGLPSHPNHELAKRQKKGGYGGLSSVIFGNEEHAKKFYDALKLFTKAPSLGGNESLAEPPAIMTHASEL  371 (409)
T ss_pred             h-CCceeEEEcCCCCCCccHHHHHhhhcCCcceEEEEEcCCHHHHHHHHHhhhhhhcccCcCccchhhcchhhhccCCCH
Confidence            7 56665 2221  10           11123233333322  2234555553  244455554332211       122


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      -...+.|+++    +.||+|++.    |++|.+++.+.++++.+
T Consensus       372 e~~~~~Gi~~----~LVRvSVGi----Ed~~dL~~d~~~Al~~~  407 (409)
T KOG0053|consen  372 EEREKFGIDP----NLVRVSVGI----EDIEDLIKDFQQALEKA  407 (409)
T ss_pred             HHHHhcCCCC----CcEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            2344677776    899999995    89999999999988765

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.86  E-value=1.4e-18  Score=177.58  Aligned_cols=363  Identities=15%  Similarity=0.123  Sum_probs=238.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      -|+.+-.+.+.++.++-.+...+.    |+....+..+..+...-.++-+++++++|.+.....||+|||+||..++...
T Consensus        85 ry~ghm~~~~~~paila~~~a~~~----N~n~~~~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~A  160 (608)
T TIGR03811        85 RYWGHMNSETLMPAILAYNYAMLW----NGNNVAYESSPATSQMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYA  160 (608)
T ss_pred             ceEEECcCCCCHHHHHHHHHHHHh----CCCCCccccCchHHHHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHH
Confidence            578777777777777766555543    3333344445566677788999999999998767899999999999988877


Q ss_pred             hhhhc------C--C---------------------------------------------C-CEEEEcCCCCcchHHHHH
Q 040741          139 MHFYK------D--K---------------------------------------------K-RHVITTQTEHKCVLDSCR  164 (457)
Q Consensus       139 ~~~~~------~--~---------------------------------------------g-~~vi~~~~~h~~~~~~~~  164 (457)
                      +....      .  +                                             . -.+++++..|.|+.+++.
T Consensus       161 R~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~  240 (608)
T TIGR03811       161 RNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAAD  240 (608)
T ss_pred             HHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhhccccccccccceEEEECCCccHHHHHHHH
Confidence            64210      0  0                                             0 058889989999999999


Q ss_pred             HHHhcCc---EEEEEeCCCCCCCCHHHHHHhcCCC------ceEEEEeccccccccccChHHHHHHH---HhcCC--cEE
Q 040741          165 HLQQEGF---EITYLPVGADGIVNLDELRAAIRPD------TGLISVMAVNNEIGVIQPMEEIGQIC---KEFKI--PFH  230 (457)
Q Consensus       165 ~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~---~~~~v--~li  230 (457)
                      .+   |+   +++.||++.++++|+++|+++|++.      +-+|+.+...+.+|.+.|+++|+++|   +++|+  ++|
T Consensus       241 il---GlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lH  317 (608)
T TIGR03811       241 II---GIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLH  317 (608)
T ss_pred             Hc---CCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEe
Confidence            99   66   6899999999999999999988632      34577788888999999999999999   67888  699


Q ss_pred             EehhhhcCCC--ccc--------------------C---------------CC-CcccEEEecccc-ccCCCCceEEEEe
Q 040741          231 TDAAQALGKI--PVD--------------------V---------------EK-WNVSLMSLSGHK-IYGPKGVGALYMR  271 (457)
Q Consensus       231 ~D~a~~~g~~--~~~--------------------~---------------~~-~~~Di~~~s~~K-~~g~~G~G~l~~~  271 (457)
                      +|+|++....  -.+                    +               .. ..+|.+++.+|| .|-|.++|+++++
T Consensus       318 VDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~R  397 (608)
T TIGR03811       318 VDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQ  397 (608)
T ss_pred             eeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEe
Confidence            9999986321  000                    0               00 258999999999 5678899999999


Q ss_pred             cCCCccc----cccccCCccc------cccccCCCChhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhhcC-
Q 040741          272 RRPRIRV----EPLINGGGQE------RGIRSGTLPTPLIVGFGSACEIA---KKEMDYDHKRITALHDRLLNGIKEKL-  337 (457)
Q Consensus       272 ~~~~~~~----~~~~~~~~~~------~~~~~~t~~~~~~~al~~al~~~---~~~~~~~~~~~~~~~~~l~~~l~~~~-  337 (457)
                      +......    .++....+..      .....|+.+....+++-.+++.+   .+++.++.++.-++++++.+.|.+ . 
T Consensus       398 d~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~legSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~-~~  476 (608)
T TIGR03811       398 DIRMRDVISYFATYVFEKGADIPALLGAYILEGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNN-LE  476 (608)
T ss_pred             CHHHHHHHhcCcchhccccccCcccccccceecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-cc
Confidence            8632111    1222110000      00112232223344455566654   567999999999999999999987 3 


Q ss_pred             -----CCeEE--eCCCCCcccceEEEEEccc--cc----hHHHhcc-c------------CeEecccCccCCCC-CChhH
Q 040741          338 -----DGVVV--NGSMERRYIGNLNLSFAYV--EG----ESLLMGL-K------------EVAVSSGSACTSAS-LEPSY  390 (457)
Q Consensus       338 -----~~~~~--~~~~~~~~~~~~~~~~~~~--~~----~~~~~~l-~------------~i~~~~g~~~~~~~-~~~~~  390 (457)
                           +.+.+  ..+++   .+++.|.+...  +.    .++...+ +            .+.++...++.... -.|..
T Consensus       477 ~~~~~~~~el~~~~~pd---lniV~Fr~~~~g~~~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~~  553 (608)
T TIGR03811       477 FKVGDKEIEVHPLTKPD---FNMVDYVFNEKGNDDLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPFA  553 (608)
T ss_pred             cccCCCCeeEEecCCCC---cceEEEEEecCCCccHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHHH
Confidence                 33444  33332   56677776422  11    1222222 1            12222222221110 12233


Q ss_pred             HHHHcCCCcc-----CCCCeEEEecCC--CCCHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDED-----MAHTSIRFGIGR--FTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       391 ~l~~~g~~~~-----~~~~~iRi~~~~--~~t~edid~~~~~l~~~~~~  432 (457)
                      ..+.+|+.++     ..-..+|-++..  .++.+.++.+++.|++++.+
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~lr~~~m~p~~~~~~~~~~~~~~~~~~~~~  602 (608)
T TIGR03811       554 FVNSLGFSDEEWQRAGKVTILRASVMTPYMNDKENFDEYAPKIKAAMQE  602 (608)
T ss_pred             HHHHcCCChhhhccCCceEEEEEEecCcccCChhhHHHHHHHHHHHHHH
Confidence            4566787744     344578888643  35568899999998888754

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=99.86  E-value=3.9e-19  Score=178.68  Aligned_cols=339  Identities=17%  Similarity=0.176  Sum_probs=214.0

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+....-..   .    +...+...++.+.|++++..+.+.++|++|||
T Consensus        79 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~~~~---~----~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  151 (459)
T PRK11522         79 TQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHS---Q----ELLDPLRAMLAKTLAALTPGKLKYSFFCNSGT  151 (459)
T ss_pred             CCCCEEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCcccc---c----ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCch
Confidence            445568887554      3578999999999987542111   0    11135667788888888765445799999999


Q ss_pred             HHHHHHHHHhhhhhcCC-CCEEEEcCC-CCcchHHHHHHHHhcCcEEEEEeCCCC----CCCCHHHHHHhcC------CC
Q 040741          129 ESNNVSIKGVMHFYKDK-KRHVITTQT-EHKCVLDSCRHLQQEGFEITYLPVGAD----GIVNLDELRAAIR------PD  196 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~-g~~vi~~~~-~h~~~~~~~~~~~~~G~~v~~v~~~~~----~~~d~~~le~~i~------~~  196 (457)
                      +|++.|++....+..++ +..||.... .|.....+............+.+..++    ...|+++++++++      ++
T Consensus       152 EAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  231 (459)
T PRK11522        152 ESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDD  231 (459)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCc
Confidence            99999999877654333 345666554 555554443332111111001111000    0127788888775      35


Q ss_pred             ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccC--CCCcccEEEeccccccC-C-CCc
Q 040741          197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDV--EKWNVSLMSLSGHKIYG-P-KGV  265 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~--~~~~~Di~~~s~~K~~g-~-~G~  265 (457)
                      ...|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|...  +..  ....+|+++++  |.+| . ..+
T Consensus       232 iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~lggG~~Pi  309 (459)
T PRK11522        232 VAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLA--KALGGGVMPI  309 (459)
T ss_pred             EEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEec--hhhhCCCccc
Confidence            678999999999999888    9999999999999999999985 33221  111  12247888655  9544 2 248


Q ss_pred             eEEEEecCCCccccccccCCccccccccCCC--ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCe
Q 040741          266 GALYMRRRPRIRVEPLINGGGQERGIRSGTL--PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGV  340 (457)
Q Consensus       266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~--~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~  340 (457)
                      |+++++++..+.+....       ....+|.  ++..+++..++++.+++  +...++.+++.+++++.|++.   +|..
T Consensus       310 gav~~~~~i~~~~~~~~-------~~~~~T~~gnp~~~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~  380 (459)
T PRK11522        310 GATIATEEVFSVLFDNP-------FLHTTTFGGNPLACAAALATINVLLE--QNLPAQAEQKGDYLLDGFRQLAREYPDL  380 (459)
T ss_pred             eeEEEcHHHHHHhccCC-------cccCCCCCCCHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            99998876544332110       0112233  67777777788888876  356778888888888887761   2211


Q ss_pred             EEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741          341 VVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA  417 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e  417 (457)
                        +++. ...+.++.+.+...+ ...+...+  +||.+....                     ...+.+||.++..+|++
T Consensus       381 --i~~V-rG~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---------------------~~~~~lr~~Ppl~~t~~  436 (459)
T PRK11522        381 --VQEA-RGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTL---------------------NNAKTIRIEPPLTLTIE  436 (459)
T ss_pred             --eeeE-EeceeEEEEEecCchHHHHHHHHHHHCCeEEEecC---------------------CCCCEEEEECCccCCHH
Confidence              1110 112444455553221 23344444  577764311                     11278999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 040741          418 EVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       418 did~~~~~l~~~~~~~~~  435 (457)
                      |||+++++++++++++..
T Consensus       437 ~id~~l~~l~~~l~~~~~  454 (459)
T PRK11522        437 QCEQVLKAARKALAAMRV  454 (459)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999987754

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.86  E-value=2e-20  Score=181.08  Aligned_cols=329  Identities=19%  Similarity=0.245  Sum_probs=199.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHH-HHHHHHHHHHHHHhCCCCCc---EEEeCChHHHHHHHHHH
Q 040741           64 QATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESE-VAVETARSQIADLIGASPKE---IIFTSGATESNNVSIKG  137 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~-~~~~~~~~~la~~~g~~~~~---i~~t~g~T~a~~~al~~  137 (457)
                      ++.+.+++.+++++...+.+.+  |.|..+.+ .|.... +...-+++++.++||+++++   -+=.-||+.|+..++.+
T Consensus        27 aSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy-~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~~a  105 (399)
T PF00464_consen   27 ASENYMSPAVREALGSDLTNKYAEGYPGKRYY-GGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVYMA  105 (399)
T ss_dssp             TT-----HHHHHHHTSGGGGS-TTEETTEESS-SSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHHHH
T ss_pred             CcccccCHHHHHHhCCcceeeccccCCCcccc-cCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHHHH
Confidence            3556889999999999888766  35554333 333333 44444788999999998553   23344688999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHH---HHHH----HHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccc
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLD---SCRH----LQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNE  208 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~---~~~~----~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~  208 (457)
                      ++    +|||.|+..+..|.+...   ....    .....+++..++++ .++.+|.+++++.++ .++++|++....+ 
T Consensus       106 Ll----~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~y-  180 (399)
T PF00464_consen  106 LL----KPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKEHKPKLIICGASSY-  180 (399)
T ss_dssp             HT-----TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHHH--SEEEEE-SST-
T ss_pred             HH----hhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhhcCCCEEEECchhc-
Confidence            99    899999987766544432   1111    01115688888888 778999999999886 4789998876543 


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEec----------
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRR----------  272 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~----------  272 (457)
                       -...|+++++++|++.|.+++.|.+|-.|     ..+-.+ ++ +|++++|.|| +.||.| |+|+.++          
T Consensus       181 -~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~-~~-ADvvt~sThKtl~GPrg-giI~~~~~~~~~~~~~~  256 (399)
T PF00464_consen  181 -PRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPF-PY-ADVVTGSTHKTLRGPRG-GIILTNKGSKNVDKKGK  256 (399)
T ss_dssp             -SS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GC-CT-SSEEEEESSGGG-SSS--EEEEES-SEEEE-TTS-
T ss_pred             -cCccCHHHHHHHHHhcCcEEEecccccccceehheecCcc-cc-ceEEEeeccccccccCc-eEEEEcCCccccCCccc
Confidence             35678999999999999999999999643     333333 33 8999999999 789996 9999882          


Q ss_pred             ----CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          273 ----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       273 ----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                          ++.+++.....-+      ..|.+-...++++..++..+.. ++.+..+++.++++.|.+.|.+  .|+.+.....
T Consensus       257 ~~~~~l~~~I~~avfP~------~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~v~~ggT  328 (399)
T PF00464_consen  257 EIDEELAEKIDSAVFPG------LQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQE--RGFKVVTGGT  328 (399)
T ss_dssp             EEEHHHHHHHHHHHTTT------T-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TT-EEGGGS-
T ss_pred             ccHHHHHHHhccccCCC------cccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhh--CCcEEEECCC
Confidence                2222332222111      1234556677888888877654 5789999999999999999999  6999986422


Q ss_pred             CcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHH
Q 040741          348 RRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEV  419 (457)
Q Consensus       348 ~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edi  419 (457)
                        -...+.+.+.  +.++......|  .||.+........              ........|||+....    ..++|+
T Consensus       329 --d~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d--------------~~~~~~sGlRlGT~~lT~rG~~e~dm  392 (399)
T PF00464_consen  329 --DNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD--------------RSPFVPSGLRLGTPALTRRGMKEEDM  392 (399)
T ss_dssp             --SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT--------------STTTT-SEEEEESHHHHHTT--HHHH
T ss_pred             --CCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC--------------CCCCCCCEEEECCHHHHhCCCCHHHH
Confidence              2444555553  35566666666  4666643211100              1112337899997554    457788


Q ss_pred             HHHHHHH
Q 040741          420 DRAIELT  426 (457)
Q Consensus       420 d~~~~~l  426 (457)
                      +++.+.|
T Consensus       393 ~~iA~~I  399 (399)
T PF00464_consen  393 KEIAELI  399 (399)
T ss_dssp             HHHHHHH
T ss_pred             HHHHhhC
Confidence            7776653

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.85  E-value=2.9e-20  Score=162.61  Aligned_cols=162  Identities=24%  Similarity=0.377  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchH-HHHHHHHhcCcEEEEEeCCCC
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVL-DSCRHLQQEGFEITYLPVGAD  181 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~-~~~~~~~~~G~~v~~v~~~~~  181 (457)
                      +.++++.++++++.+++++++++|||+|+.++++++.    +++++|++..+.|++.. ..+.   ..|.++..++.+.+
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~----~~~~~v~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~   74 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL----GPGDEVIVDANGHGSRYWVAAE---LAGAKPVPVPVDDA   74 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC----CCCCEEEEeecccceehhhHHH---hcCCEEEEeccCCC
Confidence            4678999999997666679999999999999999988    77899999999999888 5444   44999999998765


Q ss_pred             CCCCH--HHHHHh-cCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc---cCCCCcccEEEec
Q 040741          182 GIVNL--DELRAA-IRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV---DVEKWNVSLMSLS  255 (457)
Q Consensus       182 ~~~d~--~~le~~-i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~---~~~~~~~Di~~~s  255 (457)
                      +..+.  +.+++. ..++++++++++++|++|...|+++|.++|+++|+++|+|++++.+....   +....++|+++.|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s  154 (170)
T cd01494          75 GYGGLDVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFS  154 (170)
T ss_pred             CccchhhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEE
Confidence            54333  255443 35788999999999999999999999999999999999999999877765   4555679999999


Q ss_pred             cccccCCCCceEEEEe
Q 040741          256 GHKIYGPKGVGALYMR  271 (457)
Q Consensus       256 ~~K~~g~~G~G~l~~~  271 (457)
                      +||++|++|+|+++++
T Consensus       155 ~~K~~~~~~~G~l~~~  170 (170)
T cd01494         155 LHKNLGGEGGGVVIVK  170 (170)
T ss_pred             cccccCCCceEEEEeC
Confidence            9998877889999875

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>PLN00144 acetylornithine transaminase

Probab=99.85  E-value=8.2e-19  Score=173.38  Aligned_cols=324  Identities=17%  Similarity=0.171  Sum_probs=201.5

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +...|++.+++.+.+.... ....     .+. .+...++.+.|.+..+.  +.++|+++||+
T Consensus        13 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~-~~~~~~la~~l~~~~~~--~~v~f~~sGse   83 (382)
T PLN00144         13 EGKEYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLA-HVSN-----VYH-TIPQVELAKRLVASSFA--DRVFFCNSGTE   83 (382)
T ss_pred             CCCEEEECCcCHHhccCCCCCHHHHHHHHHHHHhcC-Cccc-----ccc-CHHHHHHHHHHHhcCCC--CeEEEeCCcHH
Confidence            34457776433      3568999999999987531 1111     011 24556777777777653  46999999999


Q ss_pred             HHHHHHHHhhhhhcCC-----------CCEEEEcCC-CCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHH
Q 040741          130 SNNVSIKGVMHFYKDK-----------KRHVITTQT-EHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDE  188 (457)
Q Consensus       130 a~~~al~~~~~~~~~~-----------g~~vi~~~~-~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~  188 (457)
                      |++.|++....+...+           +.+||.... .|.....+.........         .+..++.+     |+++
T Consensus        84 A~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~  158 (382)
T PLN00144         84 ANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEA  158 (382)
T ss_pred             HHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHH
Confidence            9999999877554321           245665554 55555444332211001         12233322     7899


Q ss_pred             HHHhcC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cc--cCCCCcccEEEecccc
Q 040741          189 LRAAIR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PV--DVEKWNVSLMSLSGHK  258 (457)
Q Consensus       189 le~~i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~--~~~~~~~Di~~~s~~K  258 (457)
                      +++++. .+.+.|+++.++++.|...+    +++|.++|++||+++|+|++++. |..  .+  +.....+|++++  +|
T Consensus       159 l~~~~~~~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~--sK  236 (382)
T PLN00144        159 ARKLIQKGKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTL--AK  236 (382)
T ss_pred             HHHhcCCCCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEe--cc
Confidence            999885 45788889989998555433    88999999999999999999873 222  11  123345785555  59


Q ss_pred             ccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----H
Q 040741          259 IYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG----I  333 (457)
Q Consensus       259 ~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~----l  333 (457)
                      .++ .-.+|+++++++..+.+.+...+.       ....++..++++.++++++++  ....++.+++.+++++.    +
T Consensus       237 ~l~~G~pig~v~~~~~~~~~~~~~~~~~-------T~~~~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~  307 (382)
T PLN00144        237 PLAGGLPIGAVLVTEKVASAINPGDHGS-------TFAGGPLVCNAALAVLDKISK--PGFLASVAKKGEYLRELLRRKL  307 (382)
T ss_pred             cccCCcceEEEEEcHHHHhccCCCCCCC-------CCCCCHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHH
Confidence            443 334899999887766654322211       124455666667777888765  23334444444444444    4


Q ss_pred             hhcCCCe-EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          334 KEKLDGV-VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       334 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      .+ .|.+ .+.+     .+.++.+.+. .....+...+  +||.+.++..                      .+.|||++
T Consensus       308 ~~-~~~~~~vrg-----~G~~~~l~l~-~~~~~~~~~~~~~Gv~i~~~~~----------------------~~~lrl~p  358 (382)
T PLN00144        308 GG-NPHVKEVRG-----VGLLVGIQLD-VPAGPLVDACRDSGLLVLTAGK----------------------GDVVRLVP  358 (382)
T ss_pred             hh-CCCceeeec-----CceEEEEEec-CccHHHHHHHHHCCeEEeecCC----------------------CCEEEEeC
Confidence            44 3332 2222     2455555552 3344555544  6777754310                      27999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +..+++++++.++++|+++++++
T Consensus       359 ~~~~~~~~i~~~~~~l~~~l~~~  381 (382)
T PLN00144        359 PLVISEAELEQAVEILADCLPAL  381 (382)
T ss_pred             CCccCHHHHHHHHHHHHHHHHhc
Confidence            99888999999999999998754

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=99.85  E-value=1.2e-18  Score=176.86  Aligned_cols=343  Identities=19%  Similarity=0.180  Sum_probs=209.3

Q ss_pred             CCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChH
Q 040741           56 GRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~t~g~T  128 (457)
                      .+.-|+|+.+      -+..+|++.+++.+.+.... ..+.   ..+ ...+...++.+.|.+++. .+.+.++|+++|+
T Consensus        87 dG~~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~-~~~~---~~~-~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGs  161 (504)
T PLN02760         87 NGKKYLDALAGLWCTALGGSEPRLVAAATEQLNKLP-FYHS---FWN-RTTKPSLDLAKELLEMFTARKMGKVFFTNSGS  161 (504)
T ss_pred             CCCEEEEcCcCHHhcccCCCCHHHHHHHHHHHhhcc-ceec---ccc-cCcHHHHHHHHHHHhhcCCCCCCEEEEeCChH
Confidence            4456788655      22578999999999987531 1000   001 112566778888888753 3335699999999


Q ss_pred             HHHHHHHHHhhhhh---cCC-CCEE-EEcCCCCcchHHHHHHHHh----cCc-----EEEEEeCCCCC------------
Q 040741          129 ESNNVSIKGVMHFY---KDK-KRHV-ITTQTEHKCVLDSCRHLQQ----EGF-----EITYLPVGADG------------  182 (457)
Q Consensus       129 ~a~~~al~~~~~~~---~~~-g~~v-i~~~~~h~~~~~~~~~~~~----~G~-----~v~~v~~~~~~------------  182 (457)
                      +|++.|++....+.   +.+ +..| .....+|.....+......    .++     .+..++.+...            
T Consensus       162 EA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  241 (504)
T PLN02760        162 EANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEF  241 (504)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHH
Confidence            99999999886543   111 2344 4555677776665543311    011     02222221100            


Q ss_pred             -CCCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCc--ccCC--CCc
Q 040741          183 -IVNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIP--VDVE--KWN  248 (457)
Q Consensus       183 -~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~--~~~~--~~~  248 (457)
                       ....+++++++.    ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++ ++|...  +...  ...
T Consensus       242 ~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~  321 (504)
T PLN02760        242 STRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIK  321 (504)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCC
Confidence             011245666663    35678999999988899988    999999999999999999999 565432  1111  224


Q ss_pred             ccEEEeccccccCC--CCceEEEEecCCCccccccccCC-ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLINGG-GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      +|+++++  |.+|.  ..+|+++++++..+.+....... ....+..+ ..++..+++..++++.+++  +...++.+++
T Consensus       322 PDivtlg--K~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~-~gnPl~~Aaala~Le~i~~--~~l~~~~~~~  396 (504)
T PLN02760        322 PDLVSLA--KALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTY-SGHPVSCAVALEALKIYKE--RNIPEHVNKI  396 (504)
T ss_pred             CcEEEec--ccccCCccccceEeecHHHHhhhhcccccccCcccCCCC-CCCHHHHHHHHHHHHHHHh--CCHHHHHHHH
Confidence            7887766  95432  24788998877665553221100 00111222 3366777777788888876  3667888888


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      .+++++.|++ +....++++ ....+.++.+.+....            ...+...+  +|+.+.+.             
T Consensus       397 g~~l~~~L~~-l~~~~~v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-------------  461 (504)
T PLN02760        397 APRFQDGIKA-FSGSPIIGE-IRGTGLILGTEFVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVA-------------  461 (504)
T ss_pred             HHHHHHHHHH-HhcCCCeee-EEeCceEEEEEEecCCcccccccchhHHHHHHHHHHHhCCcEEEec-------------
Confidence            8888888876 422222211 1122444444442211            11122222  46655321             


Q ss_pred             HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                                 .+.+||++...+|++|||+++++++++++++.
T Consensus       462 -----------g~~lrl~Ppl~it~eeid~~~~~l~~al~~~~  493 (504)
T PLN02760        462 -----------GDNIMMSPPLIITPEEVDELISIYGKALKATE  493 (504)
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                       15799999999999999999999999998763

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=99.85  E-value=1.6e-18  Score=174.55  Aligned_cols=337  Identities=14%  Similarity=0.106  Sum_probs=207.0

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.-      ..+|++.+++.+.+....-.+..      ....+...++.++|+++++-..+.++|++||++
T Consensus        41 dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~~~~~~~------~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGse  114 (433)
T PRK08117         41 DGKEYLDFTSGIAVANVGHRHPKVVQAIKEQADKLMHGPSG------VIYYESILKLAEELAEITPGGLDCFFFSNSGAE  114 (433)
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCcccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence            344688865542      47899999999998753211100      012256788999999998433456999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHH-----hcCc-----EEEEEeCCCCCC------------CCHH
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-----QEGF-----EITYLPVGADGI------------VNLD  187 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~~~------------~d~~  187 (457)
                      |++.+++....+ .++...|......|.....+.....     ..+.     .+..+|.+....            .|++
T Consensus       115 A~e~AlklAr~~-tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (433)
T PRK08117        115 AIEGALKLAKHV-TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLR  193 (433)
T ss_pred             HHHHHHHHHHHh-cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHH
Confidence            999999965543 2333444455566777666543221     0011     123333321110            1566


Q ss_pred             HHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cccCCCC--cccEEE
Q 040741          188 ELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVDVEKW--NVSLMS  253 (457)
Q Consensus       188 ~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~~~~~--~~Di~~  253 (457)
                      ++++.++     .+...|+++.+....|.+.|    +++|.++|++||+++|+|++|+. |..  .+....+  .+|++ 
T Consensus       194 ~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~-  272 (433)
T PRK08117        194 DLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIM-  272 (433)
T ss_pred             HHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEe-
Confidence            6777653     35789999999999999988    99999999999999999999973 211  1111122  35664 


Q ss_pred             eccccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       254 ~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~  332 (457)
                       +++|.+|+ -.+|+++++++..+.+.....+.       ....++..+++..++++.++.  +...++.+++.+++++.
T Consensus       273 -t~sK~lg~G~pigav~~~~~i~~~~~~~~~~~-------T~~~np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~  342 (433)
T PRK08117        273 -TIAKGIASGLPLSAVVASKELMEQWPLGSHGT-------TFGGNPVACAAALATLEVIKE--EKLLDNANEMGAYALER  342 (433)
T ss_pred             -ehhhhccCCCcceeEEEcHHHHhhccCCCCCC-------CCCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHH
Confidence             66696552 23899999877655543222111       114466777777788887754  35666777777777777


Q ss_pred             HhhcCC-CeEEeCCCCCcccceEEEEEcccc-------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          333 IKEKLD-GVVVNGSMERRYIGNLNLSFAYVE-------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       333 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      |.+ +. ...+..+ ....+.++.+.+...+       ...+...+  +||.+.+..                     ..
T Consensus       343 L~~-l~~~~~~~~~-vrg~Gl~~gi~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~g---------------------~~  399 (433)
T PRK08117        343 LEV-LKEKHPVIGD-VRGIGLMIGIEIVDPDGEPDGDAVEKILDKCLEKGLLFYLCG---------------------NA  399 (433)
T ss_pred             HHH-HHhcCCceee-eecCCcEEEEEEecCCCCcchHHHHHHHHHHHHCCCEEeecC---------------------CC
Confidence            765 21 1111111 1122334444442111       11222223  466553210                     01


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+.+||+++..+|+++|++++++|.++++++
T Consensus       400 ~~~lRl~p~~~~t~~~i~~~~~~l~~~l~~~  430 (433)
T PRK08117        400 GNVLRMIPPLTVTKEEIDEGLDILDEALTEY  430 (433)
T ss_pred             CCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence            2799999999999999999999999999876

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.84  E-value=2.1e-18  Score=168.26  Aligned_cols=302  Identities=16%  Similarity=0.117  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCcEEEEEeC-
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEITYLPV-  178 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~~-  178 (457)
                      +.+.++++.+++++|.+.  +++|++||.|++++.....    ++||.|  +.++|.....+ +...   |+.++-++. 
T Consensus        71 ~s~~~lE~~va~~~G~~~--av~v~sGT~Al~ll~~l~l----~pGDeV--psn~~f~Tt~ahIe~~---Gav~vDi~~d  139 (450)
T TIGR02618        71 RNFYHLERTVRELYGFKY--VVPTHQGRGAENLLSQIAI----KPGDYV--PGNMYFTTTRYHQEKN---GATFVDIIID  139 (450)
T ss_pred             CcHHHHHHHHHHHHCCCe--EEEcCCHHHHHHHHHHhCC----CCcCEE--CCceeHHHHHHHHHhC---CeEEEeeecc
Confidence            568899999999999876  9999999999988765555    899977  55666555554 4444   775444432 


Q ss_pred             ---------CCCCCCCHHHHHHhcCCC----ceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc
Q 040741          179 ---------GADGIVNLDELRAAIRPD----TGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP  241 (457)
Q Consensus       179 ---------~~~~~~d~~~le~~i~~~----t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~  241 (457)
                               +.+|.+|+++|+++|+++    +.+|+++.++|.. |...|   +++|.++|++||+.+|.|+|+.++...
T Consensus       140 ea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~  219 (450)
T TIGR02618       140 EAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVFYDATRCVENAY  219 (450)
T ss_pred             cccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEEEEccchhhChh
Confidence                     245889999999999863    4578888888865 77754   789999999999999999999885321


Q ss_pred             c-----------cCC----C--CcccEEEecccc-ccCCCCceEEEEec-CCCccccccccC-CccccccccCCCChhHH
Q 040741          242 V-----------DVE----K--WNVSLMSLSGHK-IYGPKGVGALYMRR-RPRIRVEPLING-GGQERGIRSGTLPTPLI  301 (457)
Q Consensus       242 ~-----------~~~----~--~~~Di~~~s~~K-~~g~~G~G~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~  301 (457)
                      +           .+.    +  ..+|.+.+|++| .++|.| |+++.++ ++.++++....- ++.   ..+|..+...+
T Consensus       220 ~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~eG~---~tyGgla~r~~  295 (450)
T TIGR02618       220 FIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVFEGM---PSYGGLAGRDM  295 (450)
T ss_pred             hhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhcCCc---cccCchhhhhH
Confidence            1           110    0  147999999999 666776 8888555 344554444211 111   12334444455


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE----cccc-----chHHHhcc--
Q 040741          302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF----AYVE-----GESLLMGL--  370 (457)
Q Consensus       302 ~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~l--  370 (457)
                      .++..+++...+  +...++.....++|.+.|.+ . |+.+..+..   .+.+.+..    +.+.     ++.+...|  
T Consensus       296 ~ala~gL~e~~~--~~y~~~r~~~a~~La~~L~~-~-Gvpv~~p~g---gh~V~vda~~~lph~~~~~~p~~al~~~ly~  368 (450)
T TIGR02618       296 EAMAIGIREAVD--YEYIEHRVKQVRYLGDKLKA-A-GVPIVEPVG---GHAVFLDARRFLPHIPQDQFPAQSLAASIYV  368 (450)
T ss_pred             HHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHH-C-CCcccCCCC---cceEEEEhHHhCCCCChhhChHHHHHHHHHH
Confidence            555556655443  23444455578889999988 4 887754322   34444433    2222     34454444  


Q ss_pred             -cCeEe-cccCccCCCCCChhHHHHHcCCCcc------CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q 040741          371 -KEVAV-SSGSACTSASLEPSYVLRALGVDED------MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       371 -~~i~~-~~g~~~~~~~~~~~~~l~~~g~~~~------~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~~  437 (457)
                       .||-- .-|+..             +|.+++      ..-..+|+.+.+- -|.+++|++++++.+..++-....
T Consensus       369 ~~gir~~e~g~~~-------------~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~  431 (450)
T TIGR02618       369 ETGVRSMERGIVS-------------AGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDDIR  431 (450)
T ss_pred             HhCccEEeeccee-------------cccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhhcC
Confidence             23322 222221             121111      1136899998874 478999999999999987655443

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=99.84  E-value=5.8e-18  Score=169.07  Aligned_cols=329  Identities=16%  Similarity=0.127  Sum_probs=206.5

Q ss_pred             ccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           53 RIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        53 ~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ....+.-|||+.+.      +..+|++.+++.+.+....-.  + .    +...+...++.++|++++....+.++|++|
T Consensus        70 ~D~dG~~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~~~--~-~----~~~~~~~~~lAe~L~~~~p~~~~~v~f~~S  142 (442)
T TIGR03372        70 IDTQGNEFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQPLH--S-Q----ELLDPLRALLAKTLAALTPGKLKYSFFCNS  142 (442)
T ss_pred             EECCCCEEEECCccHHhhhcCCCCHHHHHHHHHHHHhCCCc--c-c----ccCCHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence            33455678886554      367899999999998764211  1 1    111256677888888887654456999999


Q ss_pred             hHHHHHHHHHHhhhhhcC-CCCEEEEcCC-CCcchHHHHHHHHhc----Cc-----EEEEEeCCCCCCCCHHHHHHhcC-
Q 040741          127 ATESNNVSIKGVMHFYKD-KKRHVITTQT-EHKCVLDSCRHLQQE----GF-----EITYLPVGADGIVNLDELRAAIR-  194 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~-~g~~vi~~~~-~h~~~~~~~~~~~~~----G~-----~v~~v~~~~~~~~d~~~le~~i~-  194 (457)
                      ||+|++.|++....+... .+.+||+... .|.....+.......    ++     .+..+|.+     |.+++++.++ 
T Consensus       143 GsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~  217 (442)
T TIGR03372       143 GTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNE  217 (442)
T ss_pred             chHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHH
Confidence            999999999977654322 2456666554 565555544332110    10     12233322     6777777663 


Q ss_pred             -----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccC--CCCcccEEEecccccc
Q 040741          195 -----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDV--EKWNVSLMSLSGHKIY  260 (457)
Q Consensus       195 -----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~--~~~~~Di~~~s~~K~~  260 (457)
                           .+...|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|...  +..  ....+|+++++  |.+
T Consensus       218 ~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~g--K~l  295 (442)
T TIGR03372       218 CKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLA--KAL  295 (442)
T ss_pred             HhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeeh--hhh
Confidence                 35789999999998999888    9999999999999999999995 43221  111  12247988755  944


Q ss_pred             C-C-CCceEEEEecCCCccccccccCCccccccccCC--CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          261 G-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGT--LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       261 g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      | . ..+|+++++++..+.+....       ....+|  .++..+++..++++.+++  +...++.+++.+++++.|++.
T Consensus       296 g~G~~Pigavv~~~~i~~~~~~~~-------~~~~~T~~gnp~~~Aaa~a~L~~i~~--~~l~~~~~~~G~~l~~~L~~l  366 (442)
T TIGR03372       296 GGGVMPIGATIATEAVFSVLFDNP-------FLHTTTFGGNPLACAAALATINELLE--KNLPAQAAIKGDFLLDGFQQL  366 (442)
T ss_pred             cCCcccceEEEecHHHHHhhhccC-------ccccCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHH
Confidence            3 2 24788888876555442110       011123  367777777788888876  345556666666666666541


Q ss_pred             ---CCCe--EEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          337 ---LDGV--VVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       337 ---~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                         +|..  .+.+     .+.++.+.+... ....+...+  +|+.+....                     ...+.+||
T Consensus       367 ~~~~~~~i~~vRG-----~Gl~~giel~~~~~~~~i~~~l~~~Gvl~~~~~---------------------~~~~~lr~  420 (442)
T TIGR03372       367 AAEYPDLIIEARG-----KGLLMAIEFRDNEIGYAFAKELFQQNILVAGTL---------------------NNAKSIRI  420 (442)
T ss_pred             HHhCCCceEEEec-----ceEEEEEEeCChHHHHHHHHHHHHCCcEEeecC---------------------CCCCEEEE
Confidence               3321  1222     244444555321 123344444  577664210                     01268999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .++..+|++|+|++++++++++
T Consensus       421 ~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       421 EPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             ECCcccCHHHHHHHHHHHHHhC
Confidence            9999999999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=99.84  E-value=4.4e-18  Score=170.79  Aligned_cols=342  Identities=14%  Similarity=0.138  Sum_probs=207.6

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+++.+.+....-.+.     ++.. .+...++.++|++++....+.+.|+++||
T Consensus        43 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-----~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGs  116 (442)
T PRK13360         43 HDGRRVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPA-----FQMG-HPKAFELANRIAEIAPGGLNHVFFTNSGS  116 (442)
T ss_pred             CCCCEEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCccc-----CCcC-CHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            345568887544      46789999999999875321110     1111 24556788888888753335699999999


Q ss_pred             HHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHH----hcC-----cEEEEEeCCCC-C--CC-------
Q 040741          129 ESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQ----QEG-----FEITYLPVGAD-G--IV-------  184 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~----~~G-----~~v~~v~~~~~-~--~~-------  184 (457)
                      +|++.|++....+...    .+.+||.... .|.....+.....    ..+     ..+..+|...+ .  .+       
T Consensus       117 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  196 (442)
T PRK13360        117 ESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEH  196 (442)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHH
Confidence            9999999987765321    2356766555 4554444332210    001     11233332211 0  00       


Q ss_pred             ---CHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCC--cc--cCCCCc
Q 040741          185 ---NLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKI--PV--DVEKWN  248 (457)
Q Consensus       185 ---d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~--~~--~~~~~~  248 (457)
                         +++++++++.    ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++ ++|..  .+  ......
T Consensus       197 ~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~  276 (442)
T PRK13360        197 GAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVT  276 (442)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCC
Confidence               2457777774    45789999999999999988    999999999999999999999 55532  11  112234


Q ss_pred             ccEEEeccccccCC--CCceEEEEecCCCcccccccc-CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLIN-GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      +|+++++  |.+|.  ..+|+++++++..+.+..... +......... +.++..+++..++++.+++  +...++.+++
T Consensus       277 PDivt~g--K~l~gG~~P~gav~~~~~i~~~~~~~~~~~~~~~~~~T~-~g~pl~~aaa~a~L~~l~~--~~l~~~~~~~  351 (442)
T PRK13360        277 PDLLTCA--KGLTNGAIPMGAVFVSSEIHDAFMQGPEAGIEFFHGYTY-SGHPLACAAALATLDLYER--EGLLTRAARL  351 (442)
T ss_pred             Cceeeee--eccccCccceEEEEEcHHHHHHhhcCCccccccccCCCC-CCCHHHHHHHHHHHHHHHh--CCHHHHHHHH
Confidence            7887665  95432  237888888765443321100 0000011112 3466777888888888876  3566778888


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc--c----chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV--E----GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      .+++++.|++ +.....+++. ...+.+..+.+...  .    ...+...+  +||.+...                   
T Consensus       352 g~~l~~~l~~-l~~~~~v~~v-rG~Gl~~~~~l~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-------------------  410 (442)
T PRK13360        352 APYWEDALHS-LRDAPHVIDI-RNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYT-------------------  410 (442)
T ss_pred             HHHHHHHHHH-hhcCCCeeee-eccceEEEEEEecCCCCcchhHHHHHHHHHHCCcEEEec-------------------
Confidence            8888888876 3222111111 11122223333211  1    12333333  56665421                   


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                           ++.+||+++..+|++|||+++++|+++++++
T Consensus       411 -----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  441 (442)
T PRK13360        411 -----GDILALSPPLIIEEAQIDELFDILAQALKET  441 (442)
T ss_pred             -----CCEEEEeCCCccCHHHHHHHHHHHHHHHHHh
Confidence                 1679999999999999999999999999754

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=99.84  E-value=1.5e-18  Score=161.18  Aligned_cols=333  Identities=18%  Similarity=0.161  Sum_probs=235.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCC-hHHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSG-ATESNNVSIKG  137 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g-~T~a~~~al~~  137 (457)
                      .+|+..+|++|++...+-+....|...+   .+|+ +......+.++++.++++++++++ +|+|..| +|..+.++..+
T Consensus        10 saGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHR-sk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~n   88 (365)
T COG1932          10 SAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHR-SKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMN   88 (365)
T ss_pred             CCCcccCCHHHHHHHHHHHhhhccCCcceeeeccc-cHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHh
Confidence            3456678999999999888776651111   2232 456678999999999999999766 4666655 78889999999


Q ss_pred             hhhhhcCCCC--EEEEcCCCCcchHHHHHHHHhcCcEEEEE---eCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          138 VMHFYKDKKR--HVITTQTEHKCVLDSCRHLQQEGFEITYL---PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       138 ~~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~G~~v~~v---~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      +.    .++.  .|.+..++..+.-++-++..+  ..+...   .-+.+..+|++...  +.++...|.+++..+.+|+.
T Consensus        89 Ll----~~~~~~yv~~g~Ws~~a~~eA~~~~~~--~~~~~~~~~~~~~~~iP~~~~~~--~~~~~ayv~~~~NeTi~Gv~  160 (365)
T COG1932          89 LL----GKRGTDYVDTGAWSEFAIKEAKKVGKQ--PKLIDARIEEAGYGSIPDLSKWD--FSDNDAYVHFCWNETISGVE  160 (365)
T ss_pred             hh----cccCceeEeeeehhHhHHHHHHHhccc--ccccccceeccCccCCCChhhcc--cCCCccEEEEecCCcccceE
Confidence            88    4443  477777777666666444321  122111   11233345555543  44556678898888889988


Q ss_pred             cC-hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCcccccc----ccCC--
Q 040741          213 QP-MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPL----INGG--  285 (457)
Q Consensus       213 ~~-l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~----~~~~--  285 (457)
                      .| .+.+.   .  +.++++|.+..+.+.++|+.+  .|++.++.+|.+||.|+++++++++++++++..    +..+  
T Consensus       161 v~~~p~~~---~--~~~~v~D~SS~ilsr~iDvsk--~dviyagaQKnlGpaGltvvIvr~~~l~r~~~~~~P~if~y~~  233 (365)
T COG1932         161 VPELPDIG---S--DGLLVADASSAILSRPIDVSK--YDVIYAGAQKNLGPAGLTVVIVRPDLLERAESYTLPSIFDYLT  233 (365)
T ss_pred             ccCCCCCC---C--CceEEEecccHHhcCCCChhH--cceEEEehhhccCccceEEEEEcHHHHhcccccCCchHhhchh
Confidence            77 23332   1  289999999999999999986  789999999999999999999999998888654    1111  


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                      ...++..+.||++..++.+...++++..  +++.+.++.++.++.|.+.+.+ .+...-...++.+...++.|.+...+-
T Consensus       234 ~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~-s~fy~~~v~~~~RS~mnV~f~~~~~~l  312 (365)
T COG1932         234 HADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDK-SDFYRNLVAKANRSRMNVTFTLVDAEL  312 (365)
T ss_pred             hhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-CCccccccchhhccceeEEEEcCcHHH
Confidence            2234556779999999999999999886  5999999999999999999999 555444444455555555666553222


Q ss_pred             -hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          364 -ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       364 -~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                       ..++..+  +|+...-|.                     ...+.+|+++...++.|+++.+++.|+++.++.
T Consensus       313 d~~fv~eae~~gl~~lkGh---------------------r~vgGmRasiynA~~~e~veaL~~fm~~f~~~~  364 (365)
T COG1932         313 DKGFVAEAEAAGLIYLKGH---------------------RSVGGLRASIYNAVPLEDVEALTDFMDWFEETY  364 (365)
T ss_pred             HHHHHHHHHHcCCceeccc---------------------cCCCceeeeeecCCCHHHHHHHHHHHHHHHHhh
Confidence             1223332  455444331                     112569999999999999999999999998764

>PLN02397 aspartate transaminase

Probab=99.83  E-value=1.2e-18  Score=174.71  Aligned_cols=284  Identities=14%  Similarity=0.049  Sum_probs=179.1

Q ss_pred             HHHHHHHHHHHHHhC-CC-----CCcEE--EeCChHHH--HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC
Q 040741          101 VAVETARSQIADLIG-AS-----PKEII--FTSGATES--NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG  170 (457)
Q Consensus       101 ~~~~~~~~~la~~~g-~~-----~~~i~--~t~g~T~a--~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G  170 (457)
                      ....++|+.+++++. ..     ++++.  -+.+|+.+  +..++..+.    .+||+|+++++.|+.+...++..   |
T Consensus        91 ~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~----~pGd~Vlv~~P~y~~y~~~~~~~---g  163 (423)
T PLN02397         91 EGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARF----YPGSTIYIPNPTWGNHHNIFRDA---G  163 (423)
T ss_pred             CCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHc---C
Confidence            467778888888763 21     12331  13344434  444444444    69999999999999999888777   9


Q ss_pred             cEEEEEeC-C-CCCCCCHHHHHHhcC---CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--
Q 040741          171 FEITYLPV-G-ADGIVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--  240 (457)
Q Consensus       171 ~~v~~v~~-~-~~~~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--  240 (457)
                      .+++.++. + .+..+|++.+++.+.   +++++++++.+|||||.+.+   +++|+++|++||+++++|++|.--..  
T Consensus       164 ~~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~~~~  243 (423)
T PLN02397        164 VPVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFASGD  243 (423)
T ss_pred             CeEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCccCCc
Confidence            99999987 3 346789998887774   56789999999999999988   66788899999999999999863211  


Q ss_pred             ------cc-cCCCC-cccEEEeccccccCCCC--ceEEE--Ee-cCCCccccccccCCccccccccCCCChhHHHHHHHH
Q 040741          241 ------PV-DVEKW-NVSLMSLSGHKIYGPKG--VGALY--MR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA  307 (457)
Q Consensus       241 ------~~-~~~~~-~~Di~~~s~~K~~g~~G--~G~l~--~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a  307 (457)
                            ++ ..... ..-+++.|++|.|+++|  +||++  .. ++.+.++...+...   .......++.....++..+
T Consensus       244 ~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~q~~~~~~  320 (423)
T PLN02397        244 LDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVKSQLKLI---ARPMYSNPPIHGASIVATI  320 (423)
T ss_pred             hhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHH
Confidence                  10 11111 12377889999888665  89985  32 22222221111000   0000112333333333333


Q ss_pred             HHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCCC----eEEeCCCCCcccceEEEEEccccchHHHhcc---cCeE
Q 040741          308 CEIA------KKEMDYDHKRITALHDRLLNGIKEKLDG----VVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVA  374 (457)
Q Consensus       308 l~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~  374 (457)
                      ++.-      .+.++...++++++++.+.+.|++ + +    +.+..+     .+.+.+++. .+ .++...|   .+|+
T Consensus       321 L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~-~-~~~~~~~~~~p-----~gg~fl~~~-l~-~~~~~~Ll~~~~V~  391 (423)
T PLN02397        321 LGDPELFSEWTKELKGMADRIISMRQKLYDALEA-R-GSPGDWSHITK-----QIGMFSFTG-LN-KEQVDRMTKEYHIY  391 (423)
T ss_pred             hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CCCCCCCcccC-----CceEEEecC-CC-HHHHHHHHHhCCEE
Confidence            4321      122567788999999999999998 5 3    333222     122223332 33 3455555   4777


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +..+                         +  ||++.. .+.+++++++++|+++++
T Consensus       392 v~~~-------------------------~--Ri~~~~-~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        392 MTRD-------------------------G--RISMAG-LSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             ECCC-------------------------C--eEEEee-CCHHHHHHHHHHHHHHHh
Confidence            6421                         3  888864 468999999999999975

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.83  E-value=4.7e-18  Score=159.93  Aligned_cols=311  Identities=13%  Similarity=0.151  Sum_probs=218.5

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCC-hHHHHHHHHHHhhhhhcCC----CCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741           98 ESEVAVETARSQIADLIGASPKEIIFTSG-ATESNNVSIKGVMHFYKDK----KRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus        98 ~~~~~~~~~~~~la~~~g~~~~~i~~t~g-~T~a~~~al~~~~~~~~~~----g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      +..+.+.+++++|.++.|.+.  +.+.+. |+.+-...+..+..++..+    ++.+|+++..|..+.-++..+   |++
T Consensus       106 G~l~li~~Lq~~L~~ITG~Da--vsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam~---G~~  180 (496)
T COG1003         106 GYLELIYELQEWLKEITGMDA--VSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAMA---GFK  180 (496)
T ss_pred             HHHHHHHHHHHHHHHhcCCce--eeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhhc---Cce
Confidence            444788999999999999976  777765 5666666666666665444    468999999999999888777   999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc-ChHHHHHHHHhcCCcEEEehhhhcCCCcc-cCCCCccc
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ-PMEEIGQICKEFKIPFHTDAAQALGKIPV-DVEKWNVS  250 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~-~l~~i~~l~~~~~v~li~D~a~~~g~~~~-~~~~~~~D  250 (457)
                      |+.|+++++|.+|+++|++++.+++..++++.+++ .|... ++.+|+++.+++|..++.|+|..-+.+.+ ...++|.|
T Consensus       181 VV~V~~~~~G~VDlddLk~k~~~~~AalMiTnPsT-~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~rPGd~G~D  259 (496)
T COG1003         181 VVVVKCDENGNVDLDDLRAKAEDNLAALMITNPST-LGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLARPGDMGFD  259 (496)
T ss_pred             EEEEecCCCCCccHHHHHHHhccceeEEEeccCcc-cccchhhHHHHHHHHHHcCCEEEecCcchhhhhccccccccccc
Confidence            99999999999999999999999999999999965 78885 59999999999999999999986433322 34567899


Q ss_pred             EEEecccccc------CCCCceEEEEecCCCcccccc---ccCCc------cc-----cccccCCCChhHHHHHHHHHHH
Q 040741          251 LMSLSGHKIY------GPKGVGALYMRRRPRIRVEPL---INGGG------QE-----RGIRSGTLPTPLIVGFGSACEI  310 (457)
Q Consensus       251 i~~~s~~K~~------g~~G~G~l~~~~~~~~~~~~~---~~~~~------~~-----~~~~~~t~~~~~~~al~~al~~  310 (457)
                      ++-+.+||-|      |.+|.|-+.++..+...+...   ..++.      ..     ....+|+.+. ...++......
T Consensus       260 V~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs~~i-l~~a~~YI~~m  338 (496)
T COG1003         260 VVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGSASI-LPIAWAYIRMM  338 (496)
T ss_pred             eEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCcchH-HHHHHHHHHHH
Confidence            9999999943      456799999987655544321   01111      00     0001122221 12222222233


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc------cccchHHHhcc--cCeEecccCccC
Q 040741          311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA------YVEGESLLMGL--KEVAVSSGSACT  382 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l--~~i~~~~g~~~~  382 (457)
                      ..+++....+...-+++|+.+.|+.   .+.+.-.+..+...-+.++..      +++..++..+|  .|+..-.-++. 
T Consensus       339 G~~GL~~ase~AvLNANYia~rL~~---~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD~GfHaPT~~FP-  414 (496)
T COG1003         339 GADGLKQASEVAVLNANYIARRLKG---YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLDYGFHAPTMYFP-  414 (496)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHhhh---cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHhcCCCCCcccCc-
Confidence            3457888888899999999999987   333321122233444445544      56677888877  34433222211 


Q ss_pred             CCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          383 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       383 ~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                                       ..-.+.+-|-+....+++++|+++++|.++.++.++-
T Consensus       415 -----------------liV~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~~  451 (496)
T COG1003         415 -----------------LIVAGTLMIEPTESESKEELDRFIDAMIAIREEADAV  451 (496)
T ss_pred             -----------------cccccceeecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence                             1123677788888889999999999999999887654

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=99.83  E-value=9.2e-18  Score=168.59  Aligned_cols=342  Identities=15%  Similarity=0.144  Sum_probs=207.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+....-.+.     .+. ..+...++.++|++++....+.+.|++||+
T Consensus        46 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~-----~~~-~~~~~~~la~~L~~~~p~~~~~v~f~~sGs  119 (445)
T PRK09221         46 ADGRKILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPA-----FQM-GHPLAFELAERLAELAPGGLDHVFFTNSGS  119 (445)
T ss_pred             CCCCEEEEccccHhhccCCCCCHHHHHHHHHHHHhccCccc-----ccc-CCHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            345568887543      36789999999999875321111     011 124566788888888754345799999999


Q ss_pred             HHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHH----hcCc-----EEEEEeCCC-C-----CC-----
Q 040741          129 ESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQ----QEGF-----EITYLPVGA-D-----GI-----  183 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~----~~G~-----~v~~v~~~~-~-----~~-----  183 (457)
                      +|++.|++....+...    .+.+||.... .|.....+.....    ..++     .+..++... .     +.     
T Consensus       120 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (445)
T PRK09221        120 ESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEH  199 (445)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHH
Confidence            9999999987765421    2346665554 4544443332110    0011     122333221 0     00     


Q ss_pred             --CCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CCc
Q 040741          184 --VNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KWN  248 (457)
Q Consensus       184 --~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~~  248 (457)
                        -+++++++.++    ++...|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|..  .+...  ...
T Consensus       200 ~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~  279 (445)
T PRK09221        200 GAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVT  279 (445)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCC
Confidence              01356777664    45789999999999999988    9999999999999999999984 5422  11122  224


Q ss_pred             ccEEEecccccc--CCCCceEEEEecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIY--GPKGVGALYMRRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K~~--g~~G~G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      +|+++++  |.+  |...+|+++++++..+.+...... .....+... +.++..+++..++++.+++  +...++.+++
T Consensus       280 PDi~~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~-~~~pl~~aaa~a~L~~i~~--~~l~~~~~~~  354 (445)
T PRK09221        280 PDIITFA--KGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTY-SAHPVACAAGLATLDIYRE--EDLFERAAEL  354 (445)
T ss_pred             CCEEEec--cccccCcccceeeEEcHHHHHhhccCcccccccccccCC-CcCHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence            6887666  943  312378888887654443221000 000011222 3455566666678888766  3567888899


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      .+++++.|++ +.....+.+ ....+.+..+.+....      ...+...+  +|+.+..+                   
T Consensus       355 g~~l~~~l~~-l~~~~~v~~-vrg~Gl~~~v~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-------------------  413 (445)
T PRK09221        355 APYFEDAVHS-LKGLPHVID-IRNIGLVAGIELAPRPGAPGARGYEAFMKCFEKGLLVRYT-------------------  413 (445)
T ss_pred             HHHHHHHHHh-hccCCCEEE-EecCceEEEEEEecccccccchHHHHHHHHHHCCeEEeec-------------------
Confidence            9999998877 422211111 1112333344443211      12333333  56665422                   


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                           .+.|||+++..+|++|||+++++|+++++++
T Consensus       414 -----~~~lr~~Ppl~~t~~eid~~~~~l~~~l~~~  444 (445)
T PRK09221        414 -----GDTIALSPPLIIEKAQIDELVDALGDALRAV  444 (445)
T ss_pred             -----CCEEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                 1689999999999999999999999999764

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.83  E-value=1e-18  Score=162.91  Aligned_cols=294  Identities=17%  Similarity=0.214  Sum_probs=206.2

Q ss_pred             HHHHHHHHHHHHHhC--------CCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE
Q 040741          101 VAVETARSQIADLIG--------ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE  172 (457)
Q Consensus       101 ~~~~~~~~~la~~~g--------~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~  172 (457)
                      .....+++.+|+++.        .+|+++++++|+|.|++.+...++    +||+..+++.|.|++...-.+.  +.|++
T Consensus       121 ~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLa----dpgdafLvPtPyY~gfdrdl~~--rTgve  194 (471)
T KOG0256|consen  121 HGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLA----DPGDAFLVPTPYYPGFDRDLRW--RTGVE  194 (471)
T ss_pred             cCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhc----CCCceeeecCCCCCccccccee--ccCce
Confidence            467778888888873        478899999999999999999988    8999999999999999765543  45999


Q ss_pred             EEEEeCC--CCCCCCHHHHHHhcC------CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc
Q 040741          173 ITYLPVG--ADGIVNLDELRAAIR------PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP  241 (457)
Q Consensus       173 v~~v~~~--~~~~~d~~~le~~i~------~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~  241 (457)
                      ++.+.+.  .+..++.+++|+++.      .+.+.+++++|+||.|...+   +..+..++.++++.+|+|+.++.....
T Consensus       195 ivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~  274 (471)
T KOG0256|consen  195 IVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFD  274 (471)
T ss_pred             EEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccC
Confidence            9998886  345789999998875      24689999999999999988   667778899999999999999743211


Q ss_pred             ---c--------cCC-CCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHH
Q 040741          242 ---V--------DVE-KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA  307 (457)
Q Consensus       242 ---~--------~~~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a  307 (457)
                         +        +.. ..+.--++.|.+|=+|.+|  .|+++..++........+..        .+..+.....-+..-
T Consensus       275 ~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~VvsaA~kmss--------f~~vSs~tQ~~la~L  346 (471)
T KOG0256|consen  275 KSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVVSAATKMSS--------FGLVSSQTQYLLASL  346 (471)
T ss_pred             ccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHHHHHHHHhh--------ccCCcHHHHHHHHHH
Confidence               0        110 1112235778889888666  99999887644433333321        123333322222222


Q ss_pred             H---HHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-c-----c-chHHHhcc--c-CeE
Q 040741          308 C---EIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-V-----E-GESLLMGL--K-EVA  374 (457)
Q Consensus       308 l---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~-~~~~~~~l--~-~i~  374 (457)
                      +   ++.+..+++..+|++...+++-+.|++  .|+.......   +-++.+.+.. .     + ...+...+  + ++.
T Consensus       347 LSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~--lgI~cl~s~A---GlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vkln  421 (471)
T KOG0256|consen  347 LSDEEFTREYLRENNKRLRIRHRYIVEGLKA--LGIPCLKSNA---GLFCWVDLRKLLTSLTFEGELELWERILDNVKLN  421 (471)
T ss_pred             hchHHHHHHHHHHHHHHHHHHHHHHHhhHHh--cCCceeecCC---eeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccc
Confidence            2   223335888889999999999999999  5776654321   2223333321 1     1 12344444  3 889


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +++|+.|...  ||               +|+|+++.. +.++.++.++++++.+++
T Consensus       422 lSpG~s~~C~--Ep---------------GWFRvcFAn-~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  422 LSPGSSCHCH--EP---------------GWFRVCFAN-MSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             cCCCCcceec--CC---------------CeEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence            9999987542  11               999999986 346667779999999887

>PRK06541 hypothetical protein; Provisional

Probab=99.83  E-value=1.3e-17  Score=168.02  Aligned_cols=345  Identities=13%  Similarity=0.068  Sum_probs=210.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.... ...  .  .++. .+...++.++|.++++.+.+.++|+++|+
T Consensus        49 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~-~~~--~--~~~~-~~~~~~la~~l~~~~p~~~~~v~f~~sGs  122 (460)
T PRK06541         49 DRGKRYLDGLAGLFVVQVGHGRAELAEAAAKQAGTLA-FFP--L--WSYA-HPPAIELAERLAALAPGDLNRVFFTTGGS  122 (460)
T ss_pred             CCCCEEEECCccHHhccCCCCCHHHHHHHHHHHhhCc-Ccc--c--cccC-CHHHHHHHHHHHHhCCCCcCEEEEcCCcH
Confidence            455568887543      3578999999999987531 000  0  0111 24566777888888764445799999999


Q ss_pred             HHHHHHHHHhhhhhc---C-CCCEEEEcC-CCCcchHHHHHHHHh----cC-----cEEEEEeCCCCC-----CCC----
Q 040741          129 ESNNVSIKGVMHFYK---D-KKRHVITTQ-TEHKCVLDSCRHLQQ----EG-----FEITYLPVGADG-----IVN----  185 (457)
Q Consensus       129 ~a~~~al~~~~~~~~---~-~g~~vi~~~-~~h~~~~~~~~~~~~----~G-----~~v~~v~~~~~~-----~~d----  185 (457)
                      +|++.|++....+..   . .+.+|+... ..|.....+......    .+     ..+..++.+...     .-|    
T Consensus       123 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  202 (460)
T PRK06541        123 EAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAF  202 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHH
Confidence            999999998776532   1 245666544 455555544432110    01     112233322110     012    


Q ss_pred             ----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCcc--cC--CCCc
Q 040741          186 ----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIPV--DV--EKWN  248 (457)
Q Consensus       186 ----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~~--~~--~~~~  248 (457)
                          ++.+++.++    .+..+|+++.++++.|.+.|    +++|.++|++||+++|+|+++ ++|....  ..  ....
T Consensus       203 ~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~  282 (460)
T PRK06541        203 GRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYV  282 (460)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCC
Confidence                366777774    35678889999999999988    999999999999999999999 5653221  11  1224


Q ss_pred             ccEEEeccccccCC-C-CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIYGP-K-GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       249 ~Di~~~s~~K~~g~-~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      +|++++  +|.+|. . .+|+++++++..+.+.+.. . ...... ....++..+++..+.++.+.+  +...++.+++.
T Consensus       283 PDivt~--gK~l~~G~~pigav~~~~~i~~~~~~~~-~-~~~~~~-T~~gnp~~~aaala~l~~l~~--~~~~~~~~~~g  355 (460)
T PRK06541        283 PDIITC--AKGITSGYSPLGAMIASDRLFEPFLDGP-T-MFLHGY-TFGGHPVSAAVALANLDIFER--EGLLDHVRDNE  355 (460)
T ss_pred             CCEEEe--cccccCCccceeEEEEcHHHHHHhhcCC-C-ccccCC-CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence            788865  595542 1 3899999887655443211 0 000001 123455666666677777655  35668888888


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-------c--------hHHHhcc--cCeEecccCccCCCCCChh
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-------G--------ESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--------~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      +++.+.|++ +....++++ ....+.++.+.|....       .        ..+...+  +|+.+.+..          
T Consensus       356 ~~l~~~L~~-l~~~~~v~~-vrg~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~----------  423 (460)
T PRK06541        356 PAFRATLEK-LLDLPIVGD-VRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGLYCRADD----------  423 (460)
T ss_pred             HHHHHHHHH-hhcCCCeEE-EEecceEEEEEEecCcccccCCcchhhhhhHHHHHHHHHHhCCeEEEecC----------
Confidence            999888877 422111111 1112444445542110       0        0122222  566664310          


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                 .+...|||++...+|++|||+++++++++++++..
T Consensus       424 -----------~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~~~~~  458 (460)
T PRK06541        424 -----------RGDPVVQLAPPLISGQEEFDEIEQILRSVLTEAWA  458 (460)
T ss_pred             -----------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                       11268999999999999999999999999987653

>PRK06105 aminotransferase; Provisional

Probab=99.83  E-value=5.6e-18  Score=170.87  Aligned_cols=344  Identities=15%  Similarity=0.108  Sum_probs=210.0

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+|+.+.+.... ....+      ....+...++.++|+++++.+.+.++|+++|
T Consensus        45 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~------~~~~~~~~~lae~L~~~~p~~~~~v~f~~SG  118 (460)
T PRK06105         45 DAGKRYIEGMAGLWSVALGFSEQRLVEAAARQMKKLPFYHTFS------HKSHGPVIDLAEKLVAMAPVPMSKVFFTNSG  118 (460)
T ss_pred             CCCCEEEEcchhHHhccCCCCCHHHHHHHHHHHHhCCCeeccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCc
Confidence            445568887543      2578999999999987531 01110      0112566778888888886544579999999


Q ss_pred             HHHHHHHHHHhhhhhc---C-CCCEEEE-cCCCCcchHHHHHHHHhc------C---cEEEEEeCCCCCC----------
Q 040741          128 TESNNVSIKGVMHFYK---D-KKRHVIT-TQTEHKCVLDSCRHLQQE------G---FEITYLPVGADGI----------  183 (457)
Q Consensus       128 T~a~~~al~~~~~~~~---~-~g~~vi~-~~~~h~~~~~~~~~~~~~------G---~~v~~v~~~~~~~----------  183 (457)
                      ++|++.|++....+..   . .+.+||. ....|.....+.......      |   ..+..++.+....          
T Consensus       119 seAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  198 (460)
T PRK06105        119 SEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEA  198 (460)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHH
Confidence            9999999998654321   1 2345555 455676665543322100      1   0122222221000          


Q ss_pred             ---CCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCc----ccCCCC
Q 040741          184 ---VNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIP----VDVEKW  247 (457)
Q Consensus       184 ---~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~----~~~~~~  247 (457)
                         .+++++++++.    .+...|+++.+....|.+.|    ++++.++|++||+++|+|+++ ++|...    ......
T Consensus       199 ~~~~~~~~le~~~~~~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v  278 (460)
T PRK06105        199 FATRLANELEALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGI  278 (460)
T ss_pred             HHHHHHHHHHHHHHHcCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCC
Confidence               12466777773    35689999999988898877    999999999999999999998 455321    112223


Q ss_pred             cccEEEecccccc-CC-CCceEEEEecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          248 NVSLMSLSGHKIY-GP-KGVGALYMRRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       248 ~~Di~~~s~~K~~-g~-~G~G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      .+|+++++  |.+ |. ..+|+++++++..+.+.+.... +...... ....++..+++..++++.+++  +...++.++
T Consensus       279 ~PDi~~~g--K~lggG~~P~~av~~~~~i~~~~~~~~~~~~~~~h~~-T~~gnpl~~aaa~a~L~~i~~--~~l~~~v~~  353 (460)
T PRK06105        279 KPDILVMS--KQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGF-TASGHPVAAAVALENLAIIEE--RDLVGNAAE  353 (460)
T ss_pred             CCCeeeee--cccccCcccceEEEEcHHHHHHHhcccccCcccccCC-CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence            57988776  944 32 2479999987655444321100 0000001 124566667777778888876  466777888


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      +.+++++.|.+ +....++++ ....+.++.+.+....            ...+...+  +|+.+.+.            
T Consensus       354 ~g~~l~~~L~~-l~~~~~v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~------------  419 (460)
T PRK06105        354 RGARLQARLRA-LADHPLVGE-VRGVGLIAAVELVADKATKTPFEPPGKVGARANAAAHEHGVISRAM------------  419 (460)
T ss_pred             HHHHHHHHHHH-hhcCCCeEE-EEecceEEEEEEecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec------------
Confidence            88888887766 322221211 1122444445442110            01222222  46555321            


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                  .+.+||+++..+|++|||++++++.++++++..
T Consensus       420 ------------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~~~  452 (460)
T PRK06105        420 ------------GDTLAFCPPLIITAAQVDEMVDRFGRALDDVAA  452 (460)
T ss_pred             ------------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHHH
Confidence                        168999999999999999999999999988654

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=3.2e-17  Score=164.58  Aligned_cols=338  Identities=13%  Similarity=0.112  Sum_probs=208.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....-...      .+...+...++.+.|.+.++...+.++|+++||
T Consensus        38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~------~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGs  111 (443)
T PRK08360         38 IEGNEYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIHYTP------IYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGS  111 (443)
T ss_pred             CCCCEEEEccccHhhcccCCCCHHHHHHHHHHHHhccCccc------cccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHH
Confidence            345568887544      25789999999999876321110      011124566777888888765445699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHHh-----cC----cEEEEEeCCCCCC------------CCH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQQ-----EG----FEITYLPVGADGI------------VNL  186 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~-----~G----~~v~~v~~~~~~~------------~d~  186 (457)
                      +|++.|++....+  ..+.+|+... ..|.....+......     .+    ..+.+++.+....            .++
T Consensus       112 EAve~AlklAr~~--tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (443)
T PRK08360        112 DANDGAIKFARAY--TKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECV  189 (443)
T ss_pred             HHHHHHHHHHHHh--cCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHH
Confidence            9999999977654  2344555544 566666555432210     01    1233443321100            134


Q ss_pred             HHHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CCCCcccEE
Q 040741          187 DELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VEKWNVSLM  252 (457)
Q Consensus       187 ~~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~~~~~Di~  252 (457)
                      +.++++++     ++++.|+++.+++++|.+.|    +++|.++|++||+++|+|++++ +|...  +.  .....+|++
T Consensus       190 ~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDii  269 (443)
T PRK08360        190 EYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDII  269 (443)
T ss_pred             HHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEE
Confidence            55666663     56889999999999998876    8899999999999999999986 33211  11  112346877


Q ss_pred             EeccccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       253 ~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~  331 (457)
                      ++  +|.+|+ -.+|+++++++..+.+.....+       .....++..+++..++++.+.+  +...++.+++.+++++
T Consensus       270 tl--sK~l~~G~pigav~~~~~i~~~~~~~~~~-------~T~~~~p~~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~  338 (443)
T PRK08360        270 TL--GKPLGGGLPISATIGRAEIMDSLPPLAHA-------FTLSGNPVASAAALAVIEEIEE--KNLLKRAEKLGNYTKK  338 (443)
T ss_pred             Ee--cccccCCceeEEEEEcHHHHhhhcCCCCC-------CCCCcCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHH
Confidence            55  696653 2389999987665555422111       1123455557777778887765  3466777777777777


Q ss_pred             HHhhcCCCeEEeCCCCCcccceEEEEEcccc---------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVE---------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      .|++......++++ ....+.++.+.|....         ...+...+  +|+.+...                      
T Consensus       339 ~L~~l~~~~~~v~~-vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~----------------------  395 (443)
T PRK08360        339 RLEEMKKKHELIGD-VRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAWELGLIVTFF----------------------  395 (443)
T ss_pred             HHHHHHHhCCCeee-eeccceEEEEEEecCCcccCccHHHHHHHHHHHHHCCeEEeec----------------------
Confidence            77651011111221 1122444444442110         11233333  56655321                      


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                       ..+.+||.++..+|++|||+++++++++++++..
T Consensus       396 -~~~~lr~~P~l~~t~~~id~~~~~l~~~l~~~~~  429 (443)
T PRK08360        396 -SGNVLRIQPPLTIEKEVLDEGLDILEEAIEDVEE  429 (443)
T ss_pred             -CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence             1278999999999999999999999999988743

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=3.7e-17  Score=163.39  Aligned_cols=336  Identities=15%  Similarity=0.134  Sum_probs=204.5

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.+..-. ..     .....+...++.++|.++++-. .+.++|++||
T Consensus        37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~-~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SG  110 (425)
T PRK07495         37 KEGRRYIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTHT-CH-----QVVPYENYVRLAERLNALVPGDFAKKTIFVTTG  110 (425)
T ss_pred             CCCCEEEEccccHHhhccCCCCHHHHHHHHHHHhhccCc-cc-----CccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence            445568886543      467899999999998763211 10     0111245666778888887643 2469999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHH-----hcCc-----EEEEEeCCCC--CC---CCHHHHHH
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQ-----QEGF-----EITYLPVGAD--GI---VNLDELRA  191 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~--~~---~d~~~le~  191 (457)
                      |+|++.|++....+  ..+.+|+. ....|.....+.....     ..++     .+..++.+.+  +.   -+++++++
T Consensus       111 seA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~  188 (425)
T PRK07495        111 AEAVENAVKIARAA--TGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDK  188 (425)
T ss_pred             HHHHHHHHHHHHHh--hCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHH
Confidence            99999999987654  23445655 4455665544432211     1111     2344544321  11   12455677


Q ss_pred             hcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCC--CcccEEEeccc
Q 040741          192 AIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEK--WNVSLMSLSGH  257 (457)
Q Consensus       192 ~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~--~~~Di~~~s~~  257 (457)
                      .+.     ++.+.|+++.+....|.+.+    +++|.++|++||+++|+|+++. +|..  .+....  ..+|++++  +
T Consensus       189 ~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tl--s  266 (425)
T PRK07495        189 LFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTM--A  266 (425)
T ss_pred             HHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEee--h
Confidence            653     35788899988888786543    8899999999999999999986 3221  111222  24676655  4


Q ss_pred             cccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          258 KIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       258 K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      |.+| ...+|+++++++..+.+.+...+      . ....++..+++..++++.+++  ....++.+++.+++++.|++.
T Consensus       267 K~l~~G~pigav~~~~~i~~~~~~~~~~------~-T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l~~~L~~l  337 (425)
T PRK07495        267 KGLAGGFPLAAVTGRAEIMDAPGPGGLG------G-TYGGNPLGIAAAHAVLDVIEE--EDLCERANQLGNRLKQRLASL  337 (425)
T ss_pred             hhhcCCccceEEEEcHHHHhccCCCCcC------C-CCCCCHHHHHHHHHHHHHHHh--chHHHHHHHHHHHHHHHHHHH
Confidence            9443 33489999988766655432211      1 124556667767778888765  345556666666666665541


Q ss_pred             ---CCCe-EEeCCCCCcccceEEEEEcccc--------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          337 ---LDGV-VVNGSMERRYIGNLNLSFAYVE--------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       337 ---~~~~-~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                         +|.+ .+.+     .+.++.+.+...+        ...+...+  +|+.+....                     ..
T Consensus       338 ~~~~~~i~~vrG-----~Gl~~~iel~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g---------------------~~  391 (425)
T PRK07495        338 RETVPEIADIRG-----PGFMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCG---------------------VH  391 (425)
T ss_pred             HhhCCCeeeeec-----CceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeecC---------------------CC
Confidence               3322 1222     1444445553211        01222222  566653210                     01


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .+.|||.++..+|++|+|+++++|++++++++.
T Consensus       392 ~~~~r~~Ppl~it~~~id~~~~~l~~~l~~~~~  424 (425)
T PRK07495        392 GNVIRFLAPITIQDDVFAEALDILEASILEASA  424 (425)
T ss_pred             CCEEEEeCCCccCHHHHHHHHHHHHHHHHHHhc
Confidence            278999999999999999999999999987753

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.82  E-value=7.9e-18  Score=164.69  Aligned_cols=303  Identities=16%  Similarity=0.102  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCcEEEEEe--
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEITYLP--  177 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~--  177 (457)
                      +.+.++++.+++++|.+.  ++++++||.|++++....+    ++|+.|  +..+|.....+ +..   .|+...-+.  
T Consensus        78 ~s~~~LE~~vAe~lG~e~--aV~v~sGTaAl~ll~~l~v----~pGd~V--p~n~~f~Tt~ahI~~---~Ga~fvDi~~d  146 (460)
T PRK13237         78 RNFYHLEETVQEYYGFKH--VVPTHQGRGAENLLSRIAI----KPGQYV--PGNMYFTTTRYHQEL---NGGIFVDIIID  146 (460)
T ss_pred             CcHHHHHHHHHHHHCCCe--EEEeCCHHHHHHHHHHhCC----CCcCEE--CCccchHhhHHHHHh---CCcEEEeeecc
Confidence            567899999999999876  9999999999998755444    789965  55556666554 433   376433221  


Q ss_pred             --------CCCCCCCCHHHHHHhcCCC----ceEEEEecccccc-cccc---ChHHHHHHHHhcCCcEEEehhhhcCCCc
Q 040741          178 --------VGADGIVNLDELRAAIRPD----TGLISVMAVNNEI-GVIQ---PMEEIGQICKEFKIPFHTDAAQALGKIP  241 (457)
Q Consensus       178 --------~~~~~~~d~~~le~~i~~~----t~li~i~~~~~~~-G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~~~  241 (457)
                              .+.+|.+|+++|+++|+++    +.+++++.++|.. |...   ++++|.++|++||+.||.|+|+.++...
T Consensus       147 ~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~  226 (460)
T PRK13237        147 EAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDATRCVENAY  226 (460)
T ss_pred             cccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEECcchhcChh
Confidence                    1246889999999999854    3467777777777 5665   5799999999999999999999987331


Q ss_pred             -----------ccCC------CCcccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHH
Q 040741          242 -----------VDVE------KWNVSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIV  302 (457)
Q Consensus       242 -----------~~~~------~~~~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  302 (457)
                                 ..+.      -...|.+++|++| ..++.| |+++.+++ +.++++....-+  +....+|..+...+.
T Consensus       227 fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~--eG~~tygg~~grd~~  303 (460)
T PRK13237        227 FIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVY--EGMPSYGGMAGRDME  303 (460)
T ss_pred             hhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhcccc--CCCcCCCChhhhHHH
Confidence                       1110      0136999999999 556666 88888775 333443332111  000123344444555


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE----ccc-----cchHHHhcc---
Q 040741          303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF----AYV-----EGESLLMGL---  370 (457)
Q Consensus       303 al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~l---  370 (457)
                      ++..++....+  ....++.-...++|.+.|.+  .|+.++.+.. .  ..+.+..    +.+     .+..+...|   
T Consensus       304 alAvgl~E~~~--~~y~~~ri~~~~~l~~~L~~--~Gvpv~~p~g-g--H~v~vda~~~lph~~~~~~p~~al~~~ly~~  376 (460)
T PRK13237        304 AMAIGIEESVQ--YEYIEHRVGQVRYLGEKLLA--AGVPIVEPVG-G--HAVFLDARRFLPHLPQDQFPAQALAAELYIE  376 (460)
T ss_pred             HHHhHHHhhch--HHHHHHHHHHHHHHHHHHHH--CCCceecCCC-c--eEEEEEhHHhCCCCCcccChHHHHHHHHHHH
Confidence            55555554443  24455555677888888888  5887776432 2  2222221    222     234555444   


Q ss_pred             cCeEe-cccCccCCCCCChhHHHHHcCCCccC------CCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q 040741          371 KEVAV-SSGSACTSASLEPSYVLRALGVDEDM------AHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       371 ~~i~~-~~g~~~~~~~~~~~~~l~~~g~~~~~------~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~~  437 (457)
                      .||-- .-|+..             +|.+++.      .-..+|+.+.+- -|.+++|++++++.+..++-....
T Consensus       377 ~GiR~~e~g~~~-------------~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~  438 (460)
T PRK13237        377 SGVRSMERGIVS-------------AGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHREDIR  438 (460)
T ss_pred             hCcCeEeeccee-------------cccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhhcC
Confidence            23321 112211             1222211      126899998874 478999999999999987655443

>PRK06062 hypothetical protein; Provisional

Probab=99.82  E-value=1.5e-17  Score=167.40  Aligned_cols=335  Identities=13%  Similarity=0.096  Sum_probs=205.5

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+....-. ..     .+ ..+...++.++|.+++....+.+.|++||+
T Consensus        50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~-----~~-~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  122 (451)
T PRK06062         50 YEGRRYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLCTV-AP-----AH-ANDARSEAARLIAERAPGDLSKVFFTNGGA  122 (451)
T ss_pred             CCCCEEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcCCc-CC-----cc-CCHHHHHHHHHHHHhCCCCCCEEEEcCChH
Confidence            455568887553      367899999999998753211 00     11 125567788888888764445799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHHhc---C-----cEEEEEeCCCCCC------CC-------H
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQQE---G-----FEITYLPVGADGI------VN-------L  186 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~~---G-----~~v~~v~~~~~~~------~d-------~  186 (457)
                      +|++.|++....+  ..+.+||... ..|.....+.......   .     ..+..++.+....      -|       +
T Consensus       123 EAve~AlklAr~~--tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  200 (451)
T PRK06062        123 DANEHAVRMARLH--TGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECERAL  200 (451)
T ss_pred             HHHHHHHHHHHHh--hCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHHHH
Confidence            9999999987754  2345565544 4565555554332100   0     0112222221110      12       6


Q ss_pred             HHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCCcccEEE
Q 040741          187 DELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKWNVSLMS  253 (457)
Q Consensus       187 ~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~~~Di~~  253 (457)
                      ++++++++    ++...|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|...    .......+|+++
T Consensus       201 ~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t  280 (451)
T PRK06062        201 AHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLIT  280 (451)
T ss_pred             HHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeee
Confidence            77888774    35689999999988999988    9999999999999999999987 33221    111123578887


Q ss_pred             eccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHH
Q 040741          254 LSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH-DRLL  330 (457)
Q Consensus       254 ~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~-~~l~  330 (457)
                      ++  |.+| . ..+|+++++++..+.+....    ...+..+ +.++..+++..++++.++++  ...++.+++. ++++
T Consensus       281 ~g--K~lggG~~Pigav~~~~~i~~~~~~~~----~~~~~T~-~gnpl~~Aaa~a~L~~l~~~--~l~~~~~~~G~~~l~  351 (451)
T PRK06062        281 FA--KGVNSGYVPLGGVAISEAIAATFADRP----YPGGLTY-SGHPLACAAAVATINAMEEE--GIVENAARIGAEVLG  351 (451)
T ss_pred             ec--hhhhcCCcCcEEEEEcHHHHHHhccCC----CCCCCCC-CCCHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHH
Confidence            65  9443 2 24899999876555443211    0011112 34566777777888887663  3555566665 4555


Q ss_pred             HHHhhc---CCCe-EEeCCCCCcccceEEEEEcccc---------------chHHHhcc--cCeEecccCccCCCCCChh
Q 040741          331 NGIKEK---LDGV-VVNGSMERRYIGNLNLSFAYVE---------------GESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       331 ~~l~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      +.|++.   .+.+ .+.+     .+.++.+.+....               ...+...+  +|+.+..            
T Consensus       352 ~~L~~l~~~~~~v~~vrG-----~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~------------  414 (451)
T PRK06062        352 PGLRELAERHPSVGEVRG-----LGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPFV------------  414 (451)
T ss_pred             HHHHHHHhcCCcEEeEec-----cccEEEEEEcccccccCCCcccchhhHHHHHHHHHHHHCCcEEee------------
Confidence            555441   3321 1222     2444444442110               01222222  3554321            


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                                  ..+.+||+++..+|++|||+++++++++++++.+.
T Consensus       415 ------------~~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~~~~  449 (451)
T PRK06062        415 ------------NGNRIHVVPPCTVTEDEVREGLAILDAALAVADAA  449 (451)
T ss_pred             ------------cCCEEEEECCccCCHHHHHHHHHHHHHHHHHhhhc
Confidence                        12689999999999999999999999999887653

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=3.8e-17  Score=164.55  Aligned_cols=339  Identities=14%  Similarity=0.097  Sum_probs=206.6

Q ss_pred             ccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeC
Q 040741           53 RIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTS  125 (457)
Q Consensus        53 ~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~  125 (457)
                      ....+.-|||+.+.      +...|++.+++.+.+.+.. ....     .....+...++.++|++.++.. .+.++|++
T Consensus        51 ~D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~  124 (443)
T PRK06058         51 EDVDGNRLIDLGSGIAVTSVGNSAPRVVEAVREQVARFT-HTCF-----MVTPYEGYVAVAEQLNRLTPGDHEKRSALFN  124 (443)
T ss_pred             EeCCCCEEEEcCcchhhhccCCCCHHHHHHHHHHHHhcc-Cccc-----cccCCHHHHHHHHHHHHhCCCCCCCEEEEeC
Confidence            33455568887553      2678999999999987531 1111     0011256667888888887633 24699999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHH-----hcCc-----EEEEEeCCCCCC------C----
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQ-----QEGF-----EITYLPVGADGI------V----  184 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~~~------~----  184 (457)
                      +|++|++.|++....+. + +++||.... .|.....+.....     ..++     .+..++......      .    
T Consensus       125 sGseA~e~AlklAr~~t-g-r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (443)
T PRK06058        125 SGAEAVENAVKIARSYT-G-RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEE  202 (443)
T ss_pred             CcHHHHHHHHHHHHHhh-C-CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHH
Confidence            99999999999766542 3 456666555 4555444433221     1111     122222211000      0    


Q ss_pred             ----CHHHHHHhcC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCccc
Q 040741          185 ----NLDELRAAIR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVS  250 (457)
Q Consensus       185 ----d~~~le~~i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~D  250 (457)
                          .++.+++.+. ++.+.|+++.++...|.+.|    +++|.++|++||+++|.|+++. +|...  +  ......+|
T Consensus       203 ~~~~~~~~l~~~~~~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PD  282 (443)
T PRK06058        203 AAARAITVIEKQVGADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPD  282 (443)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCC
Confidence                1334455553 56788889988877787765    9999999999999999999986 33221  1  11123479


Q ss_pred             EEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       251 i~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +++++  |.+| .-.+|+++++++..+.+.+...+.       ....++..+++..++++.+.+  +...++.+++.+++
T Consensus       283 iv~~g--K~l~~G~Pi~av~~~~~i~~~~~~~~~~~-------T~~gnpl~~aaa~a~L~~~~~--~~l~~~~~~~g~~l  351 (443)
T PRK06058        283 LITTA--KGIAGGLPLSAVTGRAEIMDAPHPGGLGG-------TYGGNPVACAAALAAIETIEE--DDLVARARQIEALM  351 (443)
T ss_pred             EEEEc--ccccCCCccEEEEEcHHHHhhccCCCCCC-------CCCCCHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHH
Confidence            98876  9443 234899999887665554332211       124566677777788887765  35667777777777


Q ss_pred             HHHHhhcCC-CeEEeCCCCCcccceEEEEEccc----cc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          330 LNGIKEKLD-GVVVNGSMERRYIGNLNLSFAYV----EG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       330 ~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      .+.|++ +. ...++++ ....+.++.+.+...    ..    ..+...+  +|+.+.++...                 
T Consensus       352 ~~~L~~-l~~~~~~i~~-vrg~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~~~~~~~~-----------------  412 (443)
T PRK06058        352 TDRLRA-LAAEDDRIGD-VRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTY-----------------  412 (443)
T ss_pred             HHHHHH-HHhhCCcEEe-eeccceEEEEEEecCCCCCCcHHHHHHHHHHHHHCCeEEeccCCC-----------------
Confidence            777765 21 1112111 112244444555211    11    1233322  57776543110                 


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                          .+.|||.++..+|++|||+++++++++++++
T Consensus       413 ----~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~~~  443 (443)
T PRK06058        413 ----GNVIRLLPPLVIGDELLREGLDVLEAALADL  443 (443)
T ss_pred             ----CCEEEEECCCccCHHHHHHHHHHHHHHHHhC
Confidence                1689999999999999999999999998753

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.82  E-value=3.2e-19  Score=173.48  Aligned_cols=230  Identities=20%  Similarity=0.280  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++..|+.+|++. ..++++|+|.+|.+++.+++    ++||.||+++..|.|+..++...   |+.++|++...
T Consensus        66 G~I~eAe~~aA~~fGAd~-t~flvnGsT~g~~a~i~a~~----~~gd~VLv~RN~HkSv~~alil~---ga~Pvyi~p~~  137 (417)
T PF01276_consen   66 GIIKEAEELAARAFGADK-TFFLVNGSTSGNQAMIMALC----RPGDKVLVDRNCHKSVYNALILS---GAIPVYIPPED  137 (417)
T ss_dssp             THHHHHHHHHHHHHTESE-EEEESSHHHHHHHHHHHHHT----TTTCEEEEETT--HHHHHHHHHH---TEEEEEEEEEE
T ss_pred             cHHHHHHHHHHHhcCCCe-EEEEecCchHHHHHHHHHhc----CCCCEEEEcCCcHHHHHHHHHHc---CCeEEEecCCc
Confidence            588999999999999864 37777888889999999999    89999999999999999998887   99999998752


Q ss_pred             C-----CCCCH-----HHHHHhcCC--C---ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhc----CCCc
Q 040741          181 D-----GIVNL-----DELRAAIRP--D---TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL----GKIP  241 (457)
Q Consensus       181 ~-----~~~d~-----~~le~~i~~--~---t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~----g~~~  241 (457)
                      +     +.+++     +.++++|+.  .   .++++++++++ .|.+.++++|+++|++++++|++|+||+.    ...+
T Consensus       138 ~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY-~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp  216 (417)
T PF01276_consen  138 NEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY-YGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLP  216 (417)
T ss_dssp             -TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T-TSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGG
T ss_pred             cccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC-CeEEECHHHHHHHhcccCCEEEEEccccccccCCCCc
Confidence            2     24566     889998863  2   24588888754 89999999999999999999999999973    2223


Q ss_pred             ccCCCCccc-------EEEecccc-ccCCCCceEEEEecCC-C--ccccccccCCccccccccCCCChhHHHHHHHHHHH
Q 040741          242 VDVEKWNVS-------LMSLSGHK-IYGPKGVGALYMRRRP-R--IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI  310 (457)
Q Consensus       242 ~~~~~~~~D-------i~~~s~~K-~~g~~G~G~l~~~~~~-~--~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~  310 (457)
                      .+....++|       +++-|.|| +.+....+++.++... +  +++...+.      -+.+.+|+.+.++++..|...
T Consensus       217 ~~a~~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~------~~~TTSPSY~lmASlD~a~~~  290 (417)
T PF01276_consen  217 RSALALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALS------MHQTTSPSYPLMASLDVARAQ  290 (417)
T ss_dssp             TTCSSTTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHH------HHS-SS--HHHHHHHHHHHHH
T ss_pred             cchhhccCccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHH------HHcCCChHHHHHHHHHHHHHH
Confidence            333345788       99999999 5666667888888864 2  22322221      134568889999999998888


Q ss_pred             H-HHhhHHHHHHHHHHHHHHHHHH---hhcCCCeEEeCCC
Q 040741          311 A-KKEMDYDHKRITALHDRLLNGI---KEKLDGVVVNGSM  346 (457)
Q Consensus       311 ~-~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~~~~~~~  346 (457)
                      + ..+-+++.++..++++.+++.|   .+ .+++.+.+++
T Consensus       291 m~~~~G~~l~~~~i~~a~~~R~~i~~~~~-~~~~~~~~~~  329 (417)
T PF01276_consen  291 MEEEEGRELLEEAIELAEEFRKKINRLND-IWGFKVLGPE  329 (417)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHHHHHHHHCC-T-SSEESS-S
T ss_pred             HhhhhhHHHHHHHHHHHHHHHHHHHhcCC-CceEecCCcc
Confidence            8 4556788888888888888888   45 7888887764

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PRK07678 aminotransferase; Validated

Probab=99.82  E-value=1.9e-17  Score=166.75  Aligned_cols=350  Identities=12%  Similarity=0.081  Sum_probs=208.3

Q ss_pred             cCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           54 IAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        54 ~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ...+.-|+|+.+.      +...|++.+++.+.+....-.+.      .+ ..+...++.+.|.++++.. +.++|++||
T Consensus        43 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~------~~-~~~~~~~lae~l~~~~~~~-~~v~f~~sG  114 (451)
T PRK07678         43 DIQGNRYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL------TQ-SHEPAIKLAEKLNEWLGGE-YVIFFSNSG  114 (451)
T ss_pred             eCCCCEEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc------cc-CCHHHHHHHHHHHHhCCCC-CEEEEeCCc
Confidence            3455568887543      36789999999999875421111      11 1245567888888888653 469999999


Q ss_pred             HHHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHHhc----C-----cEEEEEeCCCCCC---------C
Q 040741          128 TESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQQE----G-----FEITYLPVGADGI---------V  184 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~~~----G-----~~v~~v~~~~~~~---------~  184 (457)
                      |+|++.|++....+...    .+.+||.... .|.....+.......    +     ..+..++.+....         .
T Consensus       115 seA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (451)
T PRK07678        115 SEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIY  194 (451)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHH
Confidence            99999999988765421    2356665554 555554443322100    0     1122233221110         1


Q ss_pred             C---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCC--CCc
Q 040741          185 N---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVE--KWN  248 (457)
Q Consensus       185 d---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~--~~~  248 (457)
                      |   ++.+++.+.    ++...|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|...  +...  ...
T Consensus       195 ~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~  274 (451)
T PRK07678        195 DLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVK  274 (451)
T ss_pred             HHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCC
Confidence            1   233566663    46789999999888888876    8999999999999999999984 54321  1122  224


Q ss_pred             ccEEEeccccc-cCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          249 VSLMSLSGHKI-YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       249 ~Di~~~s~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      +|+++++  |. .|. ..+|+++++++..+.+.+....+...... ....++..+++..++++.+++  +...++.+++.
T Consensus       275 PDivt~g--K~lggG~~Pi~av~~~~~i~~~~~~~~~~~~~~h~~-T~~gnp~~~aaa~a~l~~l~~--~~~~~~~~~~g  349 (451)
T PRK07678        275 PDIITMA--KGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVN-TFGGNPAACALALKNLEIMEN--ENLIERSAQLG  349 (451)
T ss_pred             CCEEEee--cccccCCcceeEEEEcHHHHHHHhccCcccccccCC-CCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence            8999776  94 333 24899999987655443211000000011 124566677777778888766  35566777777


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHH
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRA  394 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~  394 (457)
                      +++++.|.+.+....++++ ....+.++.+.+...       +   ...+...+  +|+.+.......            
T Consensus       350 ~~l~~~l~~~~~~~~~v~~-vrg~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v------------  416 (451)
T PRK07678        350 ELLLEQLKEELGEHPLVGD-IRGKGLLVGIELVNDKETKEPADNDKVASVVAACKEKGLIIGKNGDTV------------  416 (451)
T ss_pred             HHHHHHHHHHHhcCCCEEE-EEeeceEEEEEEecCCcccCcCchHHHHHHHHHHHHCCcEEeecCccc------------
Confidence            7777766541111111111 112244444555211       0   11233333  576664311000            


Q ss_pred             cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       395 ~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                           ....+.|||+++..+|++|||++++++++++++++
T Consensus       417 -----~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~~~~  451 (451)
T PRK07678        417 -----AGYNNVLTLSPPLVISSEEIAFIVGTLKTALERIK  451 (451)
T ss_pred             -----cCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHhcC
Confidence                 01126899999999999999999999999998653

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=99.82  E-value=4.5e-17  Score=163.76  Aligned_cols=337  Identities=15%  Similarity=0.157  Sum_probs=205.0

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....-. ..     .....+...++.+.|+++++... +.+.|+++|
T Consensus        39 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~~~-~~-----~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SG  112 (445)
T PRK08593         39 VDGKTYIDLLASASSQNVGHAPPRVVEAIKAQADKFIHY-TP-----AYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSG  112 (445)
T ss_pred             CCCCEEEECCccHHhhcCCCCCHHHHHHHHHHHHhccCc-cc-----cccCCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence            344568887442      256899999999998753211 00     00112566778888988886432 469999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHHh-----cC-----cEEEEEeCCCCC-----CCC------
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQQ-----EG-----FEITYLPVGADG-----IVN------  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~~-----~G-----~~v~~v~~~~~~-----~~d------  185 (457)
                      ++|++.|++....+. + +.+|+. ....|.....+......     .+     ..+..++.+...     ..+      
T Consensus       113 seA~e~AiklAr~~t-g-r~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  190 (445)
T PRK08593        113 SDANDGIIKFARAYT-G-RPYIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEE  190 (445)
T ss_pred             HHHHHHHHHHHHHhh-C-CCeEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHH
Confidence            999999999776542 3 344554 55567666555433210     00     123334432110     011      


Q ss_pred             -HHHHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCccc
Q 040741          186 -LDELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVS  250 (457)
Q Consensus       186 -~~~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~D  250 (457)
                       ++++++.+.     ++.+.|+++.+.+..|.+.|    +++|.++|++||+++|+|+++. +|...  +  ......+|
T Consensus       191 ~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pD  270 (445)
T PRK08593        191 YLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPD  270 (445)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCC
Confidence             244554442     56889999999998898877    9999999999999999999984 44221  1  11122478


Q ss_pred             EEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       251 i~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +++++  |.+| .-.+|+++++++..+.+......      + ....++..+++..++++.+++  +...++.+++.+++
T Consensus       271 i~t~g--K~l~~G~p~gav~~~~~i~~~~~~~~~~------~-T~~~~pl~~aaa~a~l~~l~~--~~l~~~~~~~g~~l  339 (445)
T PRK08593        271 LMSFG--KSLAGGMPMSAIVGRKEIMESLEAPAHL------F-TTGANPVSCAAALATIDMIED--ESLLQRSAEKGEYA  339 (445)
T ss_pred             Eeeec--ccccCCcccEEEEEcHHHHhhhccCCCC------C-CCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHH
Confidence            77655  9443 22379999987765554321111      1 224556667777778888776  35667777777777


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEccc------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      ++.|++......++++ ....+.++.+.+...      +   ...+...+  +||.+.+.                    
T Consensus       340 ~~~L~~l~~~~~~v~~-vrG~Gl~~gi~l~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~--------------------  398 (445)
T PRK08593        340 RKRFDQWVSKYNFVGD-VRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAV--------------------  398 (445)
T ss_pred             HHHHHHHHhcCCcEEE-EeccceEEEEEEecCCCcCCCcHHHHHHHHHHHHHCCeEEecc--------------------
Confidence            7777651011111111 111233333444211      0   11233333  56655321                    


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                         ..+.+||.++..+|++|||+++++++++++++.
T Consensus       399 ---~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~~  431 (445)
T PRK08593        399 ---AGNVLRFQPPLVITYEQLDTALNTIEQAFTALE  431 (445)
T ss_pred             ---CCCEEEEECCCccCHHHHHHHHHHHHHHHHHHh
Confidence               126899999999999999999999999998763

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=99.82  E-value=1.3e-17  Score=167.80  Aligned_cols=323  Identities=16%  Similarity=0.151  Sum_probs=199.5

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+.+...        +.. ..+...++.++|+++++.. ++++|++||+
T Consensus        45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--------~~~-~~~~~~~lae~l~~~~~~~-~~v~~~~sGs  114 (423)
T TIGR00713        45 VDGNEYIDYVLSWGPLILGHAHPRVVEAVKEALERGTS--------YGA-PTEAEILLAKEIISRVPSV-EMVRFVNSGT  114 (423)
T ss_pred             CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc--------CCC-CCHHHHHHHHHHHHhCCcc-cEEEEeCCHH
Confidence            445568886543      26789999999999875321        111 1246678999999988643 5799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCc-----------------EEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF-----------------EITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~-----------------~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|+..+++....+  ..+++||+....|.+....+......|.                 .+..++.     .|++++++
T Consensus       115 eA~e~Alk~ar~~--~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~  187 (423)
T TIGR00713       115 EATMSAVRLARGY--TGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPY-----NDLEALEE  187 (423)
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCC-----CCHHHHHH
Confidence            9999999987654  3457888877766665443322100010                 1111221     28999999


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCC--c--ccCCCCcccEEEecccccc
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKI--P--VDVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~--~--~~~~~~~~Di~~~s~~K~~  260 (457)
                      +++   +++++|+++.+.+.+|.+.|    +++|.++|++||+++|+|++|.....  .  .......+|++  +++|.+
T Consensus       188 ~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l  265 (423)
T TIGR00713       188 VFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKII  265 (423)
T ss_pred             HHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhh
Confidence            886   56788888766666898877    78999999999999999999853211  1  11112246755  567966


Q ss_pred             CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcC
Q 040741          261 GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       261 g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                      |+ -.+|+++++++..+.+.+...   ... ......++..+++..++++.++++  +++..+..+.+.+.+.+.+.+ +
T Consensus       266 ~~G~pig~v~~~~~i~~~~~~~~~---~~~-~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~  340 (423)
T TIGR00713       266 GGGLPVGAFGGRREIMERLAPEGP---VYQ-AGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLED-T  340 (423)
T ss_pred             cCCCceeeeeEHHHHHHhhCcCCC---eee-ccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            52 238999998876665542100   000 011145666677777788877652  344444555555555555555 3


Q ss_pred             CCeEE--eCCCCCcccceEEEEEccc-----------cch---HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          338 DGVVV--NGSMERRYIGNLNLSFAYV-----------EGE---SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       338 ~~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                       ++..  .+     .+.++.+.+...           +..   .+...+  +||.+..+.                    
T Consensus       341 -~~~~~v~~-----~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~--------------------  394 (423)
T TIGR00713       341 -GIPHTVNR-----VGSMFSLFFTEEEVTNYADAKKSDTELFAKFFHEMLDKGVFLPPSQ--------------------  394 (423)
T ss_pred             -CCCeEEEe-----eccEEEEEEecCCCCChhhhhcccHHHHHHHHHHHHHCCeEEecCC--------------------
Confidence             2222  22     134444444210           111   233333  576654321                    


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                         .+.+||++.  ++++||++++++|++++++
T Consensus       395 ---~~~~~l~~~--~t~~~i~~~~~~l~~~l~~  422 (423)
T TIGR00713       395 ---FEACFLSAA--HTEEDIENTIEAAEEVFAE  422 (423)
T ss_pred             ---ccceeeECC--CCHHHHHHHHHHHHHHHhh
Confidence               035788775  6899999999999998865

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=99.82  E-value=1.7e-17  Score=164.89  Aligned_cols=332  Identities=16%  Similarity=0.140  Sum_probs=202.4

Q ss_pred             cCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           54 IAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        54 ~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ...+.-|+|+.+.      +..+|++.+++.+.+...... .  ..    ...+...++.++|.++.+. .+.++|++||
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~--~~----~~~~~~~~la~~L~~~~~~-~~~v~f~~sG  107 (408)
T PRK04612         36 DDQGREYLDLAAGIAVCGLGHNDPDLVAALTEQAGKLWHT-S--NV----FYSAPPLKLAEELVTASRF-AEKVFLCNSG  107 (408)
T ss_pred             ECCCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccc-c--cc----cCCHHHHHHHHHHHhhCCC-CCEEEEcCch
Confidence            3455568887543      357899999999998753211 1  00    1123455677777777643 2569999999


Q ss_pred             HHHHHHHHHHhhhhhcCC-----CCEEEEcCC-CCcchHHHHHHHHh----cCcE-----EEEEeCCCCCCCCHHHHHHh
Q 040741          128 TESNNVSIKGVMHFYKDK-----KRHVITTQT-EHKCVLDSCRHLQQ----EGFE-----ITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~-----g~~vi~~~~-~h~~~~~~~~~~~~----~G~~-----v~~v~~~~~~~~d~~~le~~  192 (457)
                      ++|++.|++....+....     +.+|+.... .|.....+......    .++.     +..++     ..|++.++++
T Consensus       108 seA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~  182 (408)
T PRK04612        108 TEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVD-----FNDVEALEAA  182 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcC-----CCCHHHHHHh
Confidence            999999999877654211     345666555 45555544332211    1111     11222     2278999998


Q ss_pred             cCC-CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCCCC--cccEEEeccccccCC
Q 040741          193 IRP-DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVEKW--NVSLMSLSGHKIYGP  262 (457)
Q Consensus       193 i~~-~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~~~--~~Di~~~s~~K~~g~  262 (457)
                      +++ +..+|+++.++...|.+.+    +++|.++|++||+++|+|++++ +|...  +.....  .+|+++  ++|.+|+
T Consensus       183 ~~~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t--~~K~l~~  260 (408)
T PRK04612        183 MAGGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVT--LAKALGG  260 (408)
T ss_pred             hCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCchhhhhhcCCCCCEEE--EcchhcC
Confidence            864 4566677766554455543    8899999999999999999986 32211  111112  345554  5595542


Q ss_pred             -CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          263 -KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       263 -~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                       -.+|+++++++..+.+.....+      ... +.++..+++..++++.+++  +.+.++.+++.+++++.|++....+.
T Consensus       261 G~piga~~~~~~~~~~~~~~~~~------~t~-~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~  331 (408)
T PRK04612        261 GFPIGAMLAGPKVAETMQFGAHG------TTF-GGNPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEALNAEFG  331 (408)
T ss_pred             CCceEEEEECHHHHhhhcCCCcC------CCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCC
Confidence             2389998887654444332111      112 3566777777778887765  46677778888888777766111111


Q ss_pred             EeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCH
Q 040741          342 VNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE  416 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~  416 (457)
                      ++++. ...+.++.+.+...   ....+...+  +|+.+.+.                       +.+.|||.++..+++
T Consensus       332 ~i~~v-rg~Gl~~~i~~~~~~~~~a~~i~~~l~~~Gvlv~~~-----------------------g~~~lRl~Ppl~it~  387 (408)
T PRK04612        332 VFAQV-RGRGLMLGAVLAPAHAGQAGAILDLAAEHGLLLLQA-----------------------GPDVLRFVPALNLTD  387 (408)
T ss_pred             Ceeee-eccceEEEEEecCchhhHHHHHHHHHHHCCeEEeeC-----------------------CCCEEEEcCCccCCH
Confidence            22211 12244444554311   123344444  56665321                       127899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 040741          417 AEVDRAIELTVKQVEKL  433 (457)
Q Consensus       417 edid~~~~~l~~~~~~~  433 (457)
                      +|||+++++++++++++
T Consensus       388 eeid~~l~~l~~~l~~~  404 (408)
T PRK04612        388 AELADGLARLRLALADY  404 (408)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999765

>PRK15029 arginine decarboxylase; Provisional

Probab=99.81  E-value=5.6e-18  Score=176.27  Aligned_cols=223  Identities=14%  Similarity=0.072  Sum_probs=169.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++..|+++|++. ..++++|+|.+|.+++.+++    ++|+.||+++.+|.|+..++...   |+.+++++...
T Consensus       205 G~I~eAq~~aA~~fgA~~-t~FlvNGST~gn~a~i~a~~----~~gd~Vlv~RN~HKSv~~al~L~---ga~Pvyl~P~~  276 (755)
T PRK15029        205 GAFGESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLILT---GAKPVYMVPSR  276 (755)
T ss_pred             cHHHHHHHHHHHHhCCCc-EEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeEEEecccc
Confidence            477889999999999863 48888899999999999999    89999999999999999988777   99999997652


Q ss_pred             --C---CCCC-----HHHHHHhcCCC--ce--------EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcC--
Q 040741          181 --D---GIVN-----LDELRAAIRPD--TG--------LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG--  238 (457)
Q Consensus       181 --~---~~~d-----~~~le~~i~~~--t~--------li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g--  238 (457)
                        .   +.++     ++.++++|...  .+        ++++++++ ..|.+.++++|+++|++++++|++|+||+.-  
T Consensus       277 ~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PT-Y~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~  355 (755)
T PRK15029        277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCT-YDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR  355 (755)
T ss_pred             cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCC-CcceeeCHHHHHHHHHhcCCeEEEECccccccc
Confidence              1   2344     88999988532  23        78888774 4899999999999999999999999999741  


Q ss_pred             ---CCc--ccC-----CCCccc-EEEecccc-ccCCCCceEEEEecC--CCc--cccccccCCccccccccCCCChhHHH
Q 040741          239 ---KIP--VDV-----EKWNVS-LMSLSGHK-IYGPKGVGALYMRRR--PRI--RVEPLINGGGQERGIRSGTLPTPLIV  302 (457)
Q Consensus       239 ---~~~--~~~-----~~~~~D-i~~~s~~K-~~g~~G~G~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~  302 (457)
                         ..|  ..+     ...++| +++-|.|| +.+....+++-++..  .++  ++...+.-      +.+.+|+.+.++
T Consensus       356 F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~------~qSTSPSY~LmA  429 (755)
T PRK15029        356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMM------HATTSPLYAICA  429 (755)
T ss_pred             cCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHH------HcCCCcHHHHHH
Confidence               122  111     114788 88889999 455555677777554  122  22222211      235588889999


Q ss_pred             HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          303 GFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       303 al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                      ++..|...+.. .-....++..+.+..+++.+.+ +++
T Consensus       430 SLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~-~~~  466 (755)
T PRK15029        430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYK  466 (755)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh-ccc
Confidence            99988887775 4577778888888888888876 543

>PRK05965 hypothetical protein; Provisional

Probab=99.81  E-value=2.2e-17  Score=166.52  Aligned_cols=346  Identities=15%  Similarity=0.110  Sum_probs=211.3

Q ss_pred             ccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           53 RIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        53 ~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ....+.-|||+.+.      +...|++.+++.+.+.+..-...    .++.. .+...++.++|.+.+..+.+.++|+++
T Consensus        41 ~D~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~----~~~~~-~~~~~~lae~L~~~~p~~~~~v~f~~s  115 (459)
T PRK05965         41 TDASGHQLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATG----YFHFG-SEPAIRLAAKLAERAPGSLNHVYFTLG  115 (459)
T ss_pred             EECCCCEEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCccc----ccccC-CHHHHHHHHHHHhhCCCCcCEEEEeCC
Confidence            33455578887653      35689999999999875321100    00111 245567888888887544457999999


Q ss_pred             hHHHHHHHHHHhhhhhcC---C-CCEEEEcCC-CCcchHHHHHHHHh------cC---cEEEEEeCCCCC----CCC---
Q 040741          127 ATESNNVSIKGVMHFYKD---K-KRHVITTQT-EHKCVLDSCRHLQQ------EG---FEITYLPVGADG----IVN---  185 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~---~-g~~vi~~~~-~h~~~~~~~~~~~~------~G---~~v~~v~~~~~~----~~d---  185 (457)
                      |++|++.|++....+...   + +.+||.... +|.....+......      .|   ..+..++.+...    .-|   
T Consensus       116 GSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (459)
T PRK05965        116 GSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQA  195 (459)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHH
Confidence            999999999987765321   2 355665554 45554443332210      11   012233322100    012   


Q ss_pred             -----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CC
Q 040741          186 -----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KW  247 (457)
Q Consensus       186 -----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~  247 (457)
                           ++++++.+.    ++...|+++.++...|.+.|    +++|.++|++||+++|+|+++. +|..  .+...  ..
T Consensus       196 ~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv  275 (459)
T PRK05965        196 IIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGV  275 (459)
T ss_pred             HHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCC
Confidence                 356777774    45788999999888888766    8999999999999999999986 4322  12121  23


Q ss_pred             cccEEEecccc-ccCC-CCceEEEEecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          248 NVSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       248 ~~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      .+|+++++  | +.|. ..+|+++++++..+.+.+.... +....+.. ...++..+++..++++.+++  +...++.++
T Consensus       276 ~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T-~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~  350 (459)
T PRK05965        276 VPDLMTVA--KGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGYT-YSAHPVSAAVGLEVLRLYHE--GGLLANGQK  350 (459)
T ss_pred             CCCeEEec--hhhccCCcceeEEEEcHHHHHHHhccccccccccccCC-CCCCHHHHHHHHHHHHHHHh--ccHHHHHHH
Confidence            58999887  9 4443 2589999988765444321000 00000111 24566677777778888876  466777888


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      +.+++.+.|++ +....++++ ....+.++.+.+....            ...+...+  +|+.+.+.            
T Consensus       351 ~g~~l~~~l~~-l~~~~~v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~------------  416 (459)
T PRK05965        351 AGPRFAAGLDA-LRAHPLVGD-VRGRGLLGALELVADKATKTPFDAALDPADRIFDRAYANGLVFRAF------------  416 (459)
T ss_pred             HHHHHHHHHHh-hccCCCEEE-EeecceEEEEEEeccccccCCCCchhHHHHHHHHHHHhCCeEEEec------------
Confidence            88888888876 322212221 1222444444442110            01222222  56665421            


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                 +.+.|||.++..+|++|||++++++.++++++
T Consensus       417 -----------g~~~i~~~PpL~it~~ei~~~~~~l~~~l~~~  448 (459)
T PRK05965        417 -----------GDGVLGFAPALCCTEGEFDLIFERTRKTLDDV  448 (459)
T ss_pred             -----------CCcEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                       12679999999999999999999999999876

>PRK12403 putative aminotransferase; Provisional

Probab=99.81  E-value=4e-17  Score=164.67  Aligned_cols=340  Identities=16%  Similarity=0.119  Sum_probs=204.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+......  +  ..++ ...+...++.++|+++++...+.++|+++||
T Consensus        51 ~dG~~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~~--~--~~~~-~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  125 (460)
T PRK12403         51 NDGKRYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPYY--N--MFFH-TTHPAVIELSELLFSLLPGHYSHAIYTNSGS  125 (460)
T ss_pred             CCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCCe--e--cccc-cCCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            345568885432      256799999999998763211  0  0001 1125677889999999874445699999999


Q ss_pred             HHHHHHHHHhhhhh---cCCCCEEEE--cCCCCcchHHHHHHHHhcC--------cEEEEEeCCCC----CC--------
Q 040741          129 ESNNVSIKGVMHFY---KDKKRHVIT--TQTEHKCVLDSCRHLQQEG--------FEITYLPVGAD----GI--------  183 (457)
Q Consensus       129 ~a~~~al~~~~~~~---~~~g~~vi~--~~~~h~~~~~~~~~~~~~G--------~~v~~v~~~~~----~~--------  183 (457)
                      +|++.|++....+.   +++++.+++  ....|.....++.......        -.+..+|.+..    ..        
T Consensus       126 eA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  205 (460)
T PRK12403        126 EANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGR  205 (460)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCCccccccCCCCCCCEEeCCCcccccccCCChHHHHH
Confidence            99999999887653   233344443  3445888777655431110        01223322110    00        


Q ss_pred             CCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCC--CCccc
Q 040741          184 VNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVE--KWNVS  250 (457)
Q Consensus       184 ~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~--~~~~D  250 (457)
                      .+++++++.+.    ++...|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|...  +...  ...+|
T Consensus       206 ~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PD  285 (460)
T PRK12403        206 RAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPD  285 (460)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCC
Confidence            11355665552    45678999999988898887    9999999999999999999995 33221  1111  22479


Q ss_pred             EEEeccccc-cCC-CCceEEEEecCCCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHH-HH
Q 040741          251 LMSLSGHKI-YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRIT-AL  325 (457)
Q Consensus       251 i~~~s~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~-~~  325 (457)
                      +++++  |. .|. ..+|+++++++..+.+.+.  +...   ...+  ..++..+++..++++.++++  ...++.+ ++
T Consensus       286 iv~~g--K~lggG~~Piga~v~~~~i~~~~~~~--~~~~---~~~~T~~gnPl~~Aaala~L~~i~~~--~l~~~~~~~~  356 (460)
T PRK12403        286 TLSIA--KGLTSGYVPMGGLVLSKRIAEALVEQ--GGVF---AHGLTYSGHPVAAAVAIANLKALRDE--GVVTRVKDDT  356 (460)
T ss_pred             eEEEc--ccccccccceEEEEECHHHHHHHhcC--CCcc---ccCCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence            99755  94 333 2478888886654443221  1000   1112  35677788888888888763  3456664 66


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc--------hHHH----hc-c-cCeEecccCccCCCCCChhHH
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG--------ESLL----MG-L-KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~----~~-l-~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      .+++++.|++......++++ ....+.++.+.|.....        ..+.    .. + +|+.+.+.             
T Consensus       357 g~~l~~~L~~l~~~~~~i~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-------------  422 (460)
T PRK12403        357 GPYLQRCLREVFGDHPLVGE-VQGAGLVAALQFAEDKATRKRFANENDLAWRCRTIGFEEGVIIRST-------------  422 (460)
T ss_pred             HHHHHHHHHHHHhcCCCEEe-EeecceEEEEEEccCccccccccchhHHHHHHHHHHHhCCEEEEec-------------
Confidence            66666666541111111111 11224444455531100        0111    11 1 46655321             


Q ss_pred             HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                 .+.+||++...+|++|+|+++++++++++++
T Consensus       423 -----------~~~~~l~Ppl~it~~eid~~~~~l~~al~~~  453 (460)
T PRK12403        423 -----------LGRMIMAPALVAGRAEIDELVDKTRIAVDRT  453 (460)
T ss_pred             -----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                       1468999999999999999999999999887

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.81  E-value=3.3e-18  Score=158.58  Aligned_cols=332  Identities=17%  Similarity=0.175  Sum_probs=223.2

Q ss_pred             EecCCCCCC----CCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           60 YLDMQATTP----VDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        60 ~l~~~~~~~----~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ++|+++.+.    ..+++.+.....++++ .|.-+.   +.-|++.+.+.++++.||+++|++.  .++-+-|-.++..+
T Consensus        96 ~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGsCGP---rGFYGt~DvHldlE~~iakF~G~E~--aivYs~gF~ti~S~  170 (467)
T KOG1358|consen   96 VLNFASANFLGLIENEEIKEEASFTLRKYGVGSCGP---RGFYGTIDVHLDLEKRIAKFMGTED--AIVYSYGFSTIESA  170 (467)
T ss_pred             eecccchhhhhhcccHHHHHHHHHHHHHhCCCCcCC---CcccccceeecccHHHHHHhhCCcc--eeeeccccchhhhc
Confidence            455555442    2355555555555543 222111   1124566899999999999999975  44444456678888


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCc-------------eEEE
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT-------------GLIS  201 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t-------------~li~  201 (457)
                      +.++.    ++||.+++....+.+...+.+..   .-.+.++..+     |++++|+.+.+.+             +.|+
T Consensus       171 ipafs----KrGDIi~~de~~nfaIq~GlqlS---RS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv  238 (467)
T KOG1358|consen  171 IPAFS----KRGDIIFVDEAVNFAIQKGLQLS---RSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIV  238 (467)
T ss_pred             chhhh----ccCcEEEEehhhhHHHHHHHhhh---hheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEE
Confidence            88888    89999999998888888777665   5577788766     8999988875432             5788


Q ss_pred             EeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEec
Q 040741          202 VMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRR  272 (457)
Q Consensus       202 i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~  272 (457)
                      ++...-++|.+.|+++|.++..||...+++|+..++|...         +++..-.+|++++|+.-..+..| |+.+++.
T Consensus       239 ~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G-gFc~G~~  317 (467)
T KOG1358|consen  239 VEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG-GFCAGKS  317 (467)
T ss_pred             EEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccccccC-ceeecce
Confidence            8999999999999999999999999999999999876442         23332357999999876776664 7777643


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      -  ......+.|.++   ..+.+.++....++..++.....+ +.+.+.++.....+.+.|.. ..++.+.+++.+   +
T Consensus       318 ~--i~~hQrLSg~~Y---~fSAslPp~la~aa~~ai~i~~~~-p~~~~~L~~k~~~~H~~l~~-~s~~~v~~~~~S---P  387 (467)
T KOG1358|consen  318 F--IADHQRLSGSGY---CFSASLPPYLAGAAIKAILIEEWN-PEIVQPLRAKVAKFHAALSS-NSGFIVSGSPES---P  387 (467)
T ss_pred             e--eEeeeeccccce---eeeccCchhhhhhHHHHHHHHhhC-cchhhhhhccccccchhhhc-CCceEEecCcCC---c
Confidence            2  222222333333   334456666666666677665544 44777788888888888888 678899887664   4


Q ss_pred             eEEEEEccc-----cchHHHhcc------cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          353 NLNLSFAYV-----EGESLLMGL------KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       353 ~~~~~~~~~-----~~~~~~~~l------~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      ++.+.+...     +...+++.+      +++.+....           ++..  ...-.....|||+++..+++||+++
T Consensus       388 i~hl~l~~~~~s~e~e~~lL~eivd~~i~~~~ll~~a~-----------~~~~--~e~~~~~pSiri~~~a~~seeel~r  454 (467)
T KOG1358|consen  388 IIHLQLERSYGSREKEEKLLEEIVDKCIAEGVLLTRAK-----------YLEK--LERCPIPPSIRICVSAGMSEEELER  454 (467)
T ss_pred             eeeeeecccccchHHHHHHHHHHHHHHHhhcceehhhh-----------hhhh--cccCCCCCcEEEEEeCCCCHHHHHH
Confidence            455555432     122333332      343332211           1111  1111123589999999999999999


Q ss_pred             HHHHHHHHHHH
Q 040741          422 AIELTVKQVEK  432 (457)
Q Consensus       422 ~~~~l~~~~~~  432 (457)
                      +++.+++....
T Consensus       455 a~~~ik~~~~~  465 (467)
T KOG1358|consen  455 AAELIKEVASA  465 (467)
T ss_pred             HHHHHHHHHHh
Confidence            99999987654

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.81  E-value=3.1e-17  Score=163.85  Aligned_cols=341  Identities=9%  Similarity=0.039  Sum_probs=209.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+++.+.+.+.... ..     .....+...++.+.|.+.+....+.+.|+++|+
T Consensus        41 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~~-----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGs  114 (429)
T PRK06173         41 KDGRRLIDGMSSWWAALHGYNHPRLNAAATNQLAKMSHI-MF-----GGFTHEPAVELAQKLLEILPPSLNKIFFADSGS  114 (429)
T ss_pred             CCCCEEEEccchHHhccCCCCCHHHHHHHHHHHHhcCCc-cc-----cccCCHHHHHHHHHHHhhCCCCcCEEEEeCCch
Confidence            455568887553      366799999999998764211 10     011124567788888888754445799999999


Q ss_pred             HHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHH-----hcCc-----EEEEEeCCCC------CCCCHH
Q 040741          129 ESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQ-----QEGF-----EITYLPVGAD------GIVNLD  187 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~------~~~d~~  187 (457)
                      +|++.|++..+.+...    .+.+|+.... .|.....+.....     ..++     .+..+|.+..      ..-+++
T Consensus       115 eAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~  194 (429)
T PRK06173        115 VAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIE  194 (429)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHH
Confidence            9999999987765321    2355665554 5555444432210     0011     1223332211      011467


Q ss_pred             HHHHhcC---CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcccEEEe
Q 040741          188 ELRAAIR---PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVSLMSL  254 (457)
Q Consensus       188 ~le~~i~---~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~Di~~~  254 (457)
                      ++++.+.   ++...|+++.+ +...|.+.|    ++++.++|++||+++|+|++|. +|..  .  .......+|++++
T Consensus       195 ~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~  274 (429)
T PRK06173        195 PLQDLLEQKGDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCI  274 (429)
T ss_pred             HHHHHHHhCCCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEe
Confidence            7788774   46788899986 777787755    8899999999999999999984 2221  1  1111235788875


Q ss_pred             ccccc-cCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040741          255 SGHKI-YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       255 s~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~  332 (457)
                        .|. .|. ..++.++++++..+.+.+... ...... .....++..+++..++++.++++  ...++.+++.+++++.
T Consensus       275 --gK~l~gG~~p~~a~~~~~~i~~~~~~~~~-~~~~~~-~T~~g~p~~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~  348 (429)
T PRK06173        275 --GKALTGGYLTLSATITTEAIAQTICSGEA-KCFMHG-PTFMANPLACAIAAESIRLLLES--PWQQNIQRIEAQLKQE  348 (429)
T ss_pred             --ehhhhCCccccceEEecHHHHHHHhcCCC-CccccC-CCCCcCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHH
Confidence              594 333 247888888765444322100 000000 01135677777788888888763  4577888888888888


Q ss_pred             HhhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe
Q 040741          333 IKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG  409 (457)
Q Consensus       333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~  409 (457)
                      |++ +.++..+++ ....+.++.+.+... ....+...+  +|+.+.+.                        .+.|||.
T Consensus       349 L~~-~~~~~~v~~-vRg~Gl~~~iel~~~~~~~~i~~~l~e~Gi~v~~~------------------------g~~l~~~  402 (429)
T PRK06173        349 LAP-AAEFDSVAE-VRVLGAIGVVEMKEPVNMATLQPRFVEHGIWVRPF------------------------GKLVYIM  402 (429)
T ss_pred             HHH-hhcCCCeee-eeccceEEEEEeCCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEe
Confidence            875 322221211 111244444555422 223444444  57766431                        1689999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          410 IGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       410 ~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ++..++++|+|+++++|++++++.
T Consensus       403 Ppl~it~~ei~~~~~~l~~~l~~~  426 (429)
T PRK06173        403 PPFIISPDELSQLTSGLLRVLKQE  426 (429)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999764

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=99.81  E-value=9.4e-17  Score=161.56  Aligned_cols=350  Identities=13%  Similarity=0.182  Sum_probs=212.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+.... ....     +....+...++.++|.+.++...+.+.|++||+
T Consensus        50 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  123 (457)
T PRK05639         50 VDGNVFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQ-HSMI-----GYTHSERAIRVAEKLAEISPIENPKVLFGLSGS  123 (457)
T ss_pred             CCCCEEEECCcCHHhhccCCCCHHHHHHHHHHHHhcc-cccc-----CccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence            455568887543      2578999999999987532 1110     111124556788888888765445799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHH-----hcCc-----EEEEEeCCCCCC--------CCH---
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQ-----QEGF-----EITYLPVGADGI--------VNL---  186 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~~~--------~d~---  186 (457)
                      +|++.|++....+  ..+.+||... ..|.....+.....     ..++     .+..+|.+....        -|.   
T Consensus       124 EA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  201 (457)
T PRK05639        124 DAVDMAIKVSKFS--TRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDEL  201 (457)
T ss_pred             HHHHHHHHHHHHh--cCCCeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHH
Confidence            9999999987754  3345566544 45665555443221     1111     233444331100        122   


Q ss_pred             -----HHHHHhc------CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCC
Q 040741          187 -----DELRAAI------RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEK  246 (457)
Q Consensus       187 -----~~le~~i------~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~  246 (457)
                           +.+++.+      .++...|+++.+....|.+.|    +++|.++|++||+++|+|+++. +|...    .....
T Consensus       202 ~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~g  281 (457)
T PRK05639        202 INRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFE  281 (457)
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcC
Confidence                 3455544      356789999999988888776    8999999999999999999987 32111    11112


Q ss_pred             CcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          247 WNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       247 ~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      ..+|+++++  | +.|..++|+++++++..+...    +. .  ... ...++..+++..++++.+++  +...++.+++
T Consensus       282 v~PDiv~~g--K~l~gG~pi~av~~~~~i~~~~~----~~-~--~~T-~~g~p~~~aaa~a~l~~l~~--~~l~~~~~~~  349 (457)
T PRK05639        282 VKPDLIIFG--KGVASGMGLSGVIGRKELMDLTS----GS-A--LLT-PAANPVISAAAEATLEIIEE--ENLLKNALKV  349 (457)
T ss_pred             CCCCEEEec--hhhcCCCcceeEEehHHHHhhcC----CC-c--ccC-CCcCHHHHHHHHHHHHHHHH--ccHHHHHHHH
Confidence            358998865  9 443445899999887655211    10 0  111 23456667777778887766  4455666667


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      .+++++.|++......++++ ....+.++.+.+....       ...+...+  +|+.+.+.                 |
T Consensus       350 g~~l~~~L~~l~~~~~~~~~-VrG~Gl~~gve~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~-----------------g  411 (457)
T PRK05639        350 GEFIKKRLLEMKESFEVIGD-VRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLILPSY-----------------G  411 (457)
T ss_pred             HHHHHHHHHHHHHhCCCEEe-eccceeEEEEEEecCCCCCCHHHHHHHHHHHHhCCeEEeec-----------------C
Confidence            77777777651111222221 1122444444442110       11223233  56666421                 0


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCccccccc
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWA  455 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (457)
                          ...+.|||.++..+|++|||+++++|+++++.+..         ...|-|-++|.
T Consensus       412 ----~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~~~~~---------~~~~~~~~~~~  457 (457)
T PRK05639        412 ----MFGNVIRITPPLVITKEIAEKGLEIMERAIKDALA---------GKVERKVVTWH  457 (457)
T ss_pred             ----CCCCEEEEeCCCccCHHHHHHHHHHHHHHHHHHHH---------hhccccccCCC
Confidence                11279999999999999999999999999987632         23446666773

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.4e-17  Score=158.12  Aligned_cols=312  Identities=21%  Similarity=0.227  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhhhhhcC----CCCEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741           99 SEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKGVMHFYKD----KKRHVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~~~~~~~----~g~~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      ......++...++.+++.+++ ....|+|+|+++.++-+.-....++    ....+++....|.+...+++++   +.++
T Consensus       118 ~~~~e~~~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf---~v~l  194 (491)
T KOG1383|consen  118 VRKLEAECVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYF---EVEL  194 (491)
T ss_pred             hHHHHHHHHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhE---EEEE
Confidence            346677788899999998755 3688889999976666654433222    2467888999999999999998   9999


Q ss_pred             EEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh-cCCcEEEehhhhcCCC--------ccc
Q 040741          174 TYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE-FKIPFHTDAAQALGKI--------PVD  243 (457)
Q Consensus       174 ~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~-~~v~li~D~a~~~g~~--------~~~  243 (457)
                      ..++.+ .+..+|+..+.+.++++|.+++.+.++.|+|.+.|+++|.++.-+ +++++|+|++.+....        +++
T Consensus       195 ~~V~~~~~~~~~D~~k~~~~i~eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~GgFi~p~~~~~~~~fd  274 (491)
T KOG1383|consen  195 REVPLDEGDYRVDPGKVVRMIDENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGGFINPAGYLNEEEFD  274 (491)
T ss_pred             EeeeccccceEecHHHHHHHhccceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCccccccccccCccccc
Confidence            999998 678999999999999999999999999999999999999999888 9999999999875433        345


Q ss_pred             CCCCcccEEEecccc-ccCCCCceEEEEecCCCccc----cccccCCccccccccCC-CChhHHHHHHHHHHHHHHhhHH
Q 040741          244 VEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRV----EPLINGGGQERGIRSGT-LPTPLIVGFGSACEIAKKEMDY  317 (457)
Q Consensus       244 ~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~----~~~~~~~~~~~~~~~~t-~~~~~~~al~~al~~~~~~~~~  317 (457)
                      +...++-.++.+.|| .+.|.|.|+++-+.+....-    .....|+-+...--.|+ +....++.+.+-+.+..+++.+
T Consensus       275 Fr~p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~~wa~~~~lG~eGY~~  354 (491)
T KOG1383|consen  275 FRVPGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAAQWAALMSLGEEGYRE  354 (491)
T ss_pred             cCCCCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHHHHHHHHHhhHHHHHH
Confidence            555567788999999 68899999998876532211    12222332222111122 2233344444455666778999


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEecccCccCCCCCChhHHHHHcCC
Q 040741          318 DHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       318 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      ..+++.+.++.+++.|++ +.++.+++.+.   ..++.+.-...+-..+.+.|++.    |.           .+.++..
T Consensus       355 ~~~~ive~~~~l~egie~-i~~i~i~gkp~---vs~~~~~s~~~~i~elsd~l~~~----GW-----------~lnalq~  415 (491)
T KOG1383|consen  355 NTQNIVETARKLREGIEN-IKGIKIVGKPL---VSFILFGSNDVNIFELSDLLRKK----GW-----------ILNALQF  415 (491)
T ss_pred             HHHHHHHHHHHHHHhhhc-cccceecCCCc---EEEEEccCCccchhhhhHHHHhc----Cc-----------CccccCC
Confidence            999999999999999999 99999999732   11111111223333343333211    10           1112222


Q ss_pred             CccCCCCeEEEecCCCCCHHH-HHHHHHHHHHHHHHHHhcC
Q 040741          398 DEDMAHTSIRFGIGRFTTEAE-VDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~ed-id~~~~~l~~~~~~~~~~~  437 (457)
                      +     ..+.|++...+.+++ .|+++..++++++++....
T Consensus       416 P-----~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~el~~~p  451 (491)
T KOG1383|consen  416 P-----AAIHICVTRVHAREDVADRFVADIRKVVEELKSLP  451 (491)
T ss_pred             C-----CceEEEEEeeeccHHHHHHHHHHHHHHHHHHHhCC
Confidence            2     478888888776666 5889999999999886543

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=99.81  E-value=2.4e-17  Score=164.41  Aligned_cols=340  Identities=10%  Similarity=0.055  Sum_probs=206.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+++.+.+.+......      +....+...++.++|+++++...+.++|++||+
T Consensus        40 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~------~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGs  113 (428)
T PRK07986         40 ADGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMF------GGITHPPAIELCRKLVAMTPQPLECVFLADSGS  113 (428)
T ss_pred             CCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCccc------cccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcH
Confidence            445568887543      35679999999999876421111      011124567788888888764445799999999


Q ss_pred             HHHHHHHHHhhhhhc---CCCCEEEEcCC-CCcchHHHHHHHHh-----cC-----cEEEEEeCCCC------CCCCHHH
Q 040741          129 ESNNVSIKGVMHFYK---DKKRHVITTQT-EHKCVLDSCRHLQQ-----EG-----FEITYLPVGAD------GIVNLDE  188 (457)
Q Consensus       129 ~a~~~al~~~~~~~~---~~g~~vi~~~~-~h~~~~~~~~~~~~-----~G-----~~v~~v~~~~~------~~~d~~~  188 (457)
                      +|++.|++....+..   .++.+||.... .|.....+......     ..     ..+..++....      ..-|+++
T Consensus       114 EAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~  193 (428)
T PRK07986        114 VAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAP  193 (428)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHH
Confidence            999999998775532   22456665554 45544443322110     00     01222332211      1236778


Q ss_pred             HHHhcC---CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEec
Q 040741          189 LRAAIR---PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLS  255 (457)
Q Consensus       189 le~~i~---~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s  255 (457)
                      +++.++   ++...|+++.+ +...|.+.|    +++|.++|++||+++|+|+++. +|..  .+  ......+|++++ 
T Consensus       194 l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~-  272 (428)
T PRK07986        194 FARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCL-  272 (428)
T ss_pred             HHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEEe-
Confidence            888875   45678888885 565676543    8999999999999999999984 3321  11  122234788865 


Q ss_pred             cccc-cCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          256 GHKI-YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       256 ~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                       .|. .|. ..+|+++++++..+.+.....+ ....+... +.++..+++..++++.++++  ...++.+++.+++++.|
T Consensus       273 -gK~l~gG~~p~~av~~~~~i~~~~~~~~~~-~~~~~~T~-~g~p~~~aaa~a~L~~i~~~--~~~~~~~~~g~~l~~~l  347 (428)
T PRK07986        273 -GKALTGGTMTLSATLTTREVAETISNGEAG-CFMHGPTF-MGNPLACAVANASLSLLESG--DWQQQVAAIEAQLREEL  347 (428)
T ss_pred             -chhhhCCcccCcchhchHHHHHHhhcCCCC-ccccCCCC-CcCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHH
Confidence             594 333 2478888887765555431100 00011111 35677777777888888763  55778888888888887


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      ++ +.....+++ ....+.++.+.+... ....+...+  +|+.+.+.                        .+.|||.+
T Consensus       348 ~~-l~~~~~i~~-vRg~Gl~~~ve~~~~~~~~~~~~~l~~~Gl~~~~~------------------------g~~i~~~P  401 (428)
T PRK07986        348 AP-LRDAPMVAD-VRVLGAIGVVETTRPVNMAALQRFFVEQGVWIRPF------------------------GKLIYLMP  401 (428)
T ss_pred             HH-HhcCCCEEe-EeccceEEEEEeCCcccHHHHHHHHHHCCcEEEec------------------------CCEEEEeC
Confidence            76 322111121 111233444444321 123344444  56665421                        16899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +..+|++||+++++++.++++.
T Consensus       402 pl~it~~ei~~~~~~l~~~l~~  423 (428)
T PRK07986        402 PYIILPEQLQRLTAAVNRAVQD  423 (428)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999853

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=99.81  E-value=9.2e-17  Score=160.28  Aligned_cols=334  Identities=13%  Similarity=0.158  Sum_probs=200.6

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEE-e
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIF-T  124 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~-t  124 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.+. +..+.    ... ..+...++.++|++.+..+  . +.+.| +
T Consensus        32 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~----~~~-~~~~~~~lae~l~~~~~~~~~~~~~~~f~~  105 (412)
T TIGR02407        32 EDGKEYIDFFAGAGALNYGHNNPKLKQALIDYLADD-GIIHS----LDM-ATEAKREFLETFNEIILKPRGLDYKVQFPG  105 (412)
T ss_pred             CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhc-cceec----ccc-CcHHHHHHHHHHHHhccCccCCCceEEEeC
Confidence            345568887543      367899999999998752 11110    011 1245566777777764221  1 23666 5


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHH----hcCc-----EEEEEeCCCC---CCCCHHHHHH
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQ----QEGF-----EITYLPVGAD---GIVNLDELRA  191 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~----~~G~-----~v~~v~~~~~---~~~d~~~le~  191 (457)
                      ++|++|++.|++....+  ..+.+||... ..|.....+.....    ..++     .+..+|.+..   ..-+++.+++
T Consensus       106 ~sGseA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  183 (412)
T TIGR02407       106 PTGTNAVESALKLARKV--TGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEK  183 (412)
T ss_pred             CCchHHHHHHHHHHhhh--cCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHH
Confidence            89999999999987754  2345666544 45555555443321    1111     2233333210   0124777888


Q ss_pred             hcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEecc
Q 040741          192 AIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSG  256 (457)
Q Consensus       192 ~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~  256 (457)
                      .+.      ++.+.|+++.+.++.|.+.|    +++|.++|++||+++|+|++++ +|..    ........+|+++++ 
T Consensus       184 ~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~-  262 (412)
T TIGR02407       184 LLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLS-  262 (412)
T ss_pred             HHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEec-
Confidence            885      35688899999999998654    8999999999999999999986 4321    122233468988765 


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                       |.+|+.|  +|+++++++. ..+.+...+.       ....++..+++..++++. +.+  ....++.+++.+++++.|
T Consensus       263 -K~lg~~G~pigav~~~~~~-~~~~~~~~~~-------T~~gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~~l  331 (412)
T TIGR02407       263 -KSISGYGLPLALTLIKPEL-DVWKPGEHNG-------TFRGNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQERL  331 (412)
T ss_pred             -hhccCCccceeEEEEchhh-hccCCCccCC-------CCCccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHH
Confidence             9655433  8999998764 3332211111       113455566666677774 443  344555566666665555


Q ss_pred             hh---cCCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          334 KE---KLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       334 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      +.   .++++...   ....+.++.+.+.... ...+...+  +||.+.+..                     ...+.||
T Consensus       332 ~~l~~~~~~~~~~---vrg~Gl~~~l~l~~~~~~~~~~~~~~~~Gv~v~~~~---------------------~~~~~lr  387 (412)
T TIGR02407       332 DRIVAEYPELIKQ---VRGRGLMQGIECGDGDLAGKIAKAAFENGLIIETSG---------------------PNDEVIK  387 (412)
T ss_pred             HHHHhhCCCceEe---eecceeEEEEEecChHHHHHHHHHHHHCCCEEeccC---------------------CCCCEEE
Confidence            43   14433221   1112444455554221 23344444  577765321                     1126899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      |.++..+|++|+|++++++++++++
T Consensus       388 ~~p~l~~t~~~i~~~~~~l~~~l~~  412 (412)
T TIGR02407       388 LLPPLTIDEETLQQGLDILEQAVEE  412 (412)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999998863

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=99.81  E-value=8.1e-17  Score=157.13  Aligned_cols=313  Identities=13%  Similarity=0.119  Sum_probs=196.9

Q ss_pred             CCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|||+.+      -+...|++.+++.+.+.+..-. .  . .  +. .+...++.++++++++.+  .++|+++||+
T Consensus        22 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~~~-~--~-~--~~-~~~~~~la~~l~~~~~~~--~v~~~~SGse   92 (364)
T PRK04013         22 QGRRYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLVVA-G--P-M--FE-HEEKEEMLEELSKWVNYE--YVYMGNSGTE   92 (364)
T ss_pred             CCCEEEEcccChhhccCCCCCHHHHHHHHHHHHhcCCc-c--C-C--cC-CHHHHHHHHHHHhhcCCC--EEEEeCchHH
Confidence            4446888644      2357799999999998764211 0  0 1  11 256778889999998754  5999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-H----hcCcE-----EEEEeCCCCCCCCHHHHHHhcCCCceE
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-Q----QEGFE-----ITYLPVGADGIVNLDELRAAIRPDTGL  199 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~----~~G~~-----v~~v~~~~~~~~d~~~le~~i~~~t~l  199 (457)
                      |++.+++....+  ..+++||+....|.+.......+ .    ..++.     +..++.     .|++++++.+.++++.
T Consensus        93 A~e~Alklar~~--~gr~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~~aA  165 (364)
T PRK04013         93 AVEAALKFARLY--TGRKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPF-----NDVEAAKEAITKETAA  165 (364)
T ss_pred             HHHHHHHHHHHH--hCCCEEEEECCccccCchhhccCCCCcccccCCCCCCCCcEEecC-----CCHHHHHHHhcCCcEE
Confidence            999999987754  23467776665544443332221 0    01222     222222     2789999999889999


Q ss_pred             EEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc---CCC-cccCCCCcccEEEeccccc-cCCCCceEEEE
Q 040741          200 ISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL---GKI-PVDVEKWNVSLMSLSGHKI-YGPKGVGALYM  270 (457)
Q Consensus       200 i~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~---g~~-~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~  270 (457)
                      |+++++....|...+    +++|.++|++||+++|+|++++.   |.. ........+|+++++  |. .|.-.+|+++.
T Consensus       166 vivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~~a~~~~gv~PDiv~~g--K~lggG~P~~a~~~  243 (364)
T PRK04013        166 VIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKFLAIEHYKVEPDIVTMG--KGIGNGVPVSLTLT  243 (364)
T ss_pred             EEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCchhHHHhcCCCCCEEEec--ccccCCceeEEEEe
Confidence            999999887777654    99999999999999999999873   211 111122357888886  94 33334788887


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      +++.    .+...+       .....++..+++..+.++.++++  ...++.++.   + +.+..  +.   +++ ....
T Consensus       244 ~~~~----~~~~~~-------~T~~gnp~~~aaa~a~l~~i~~~--~l~~~~~~~---l-~~l~~--~~---v~~-vRG~  300 (364)
T PRK04013        244 NFDV----ERGKHG-------STFGGNPLACKAVAVTLRILRRE--RLVEKAGEK---F-IEIKG--ER---VVT-TRGR  300 (364)
T ss_pred             cccc----cCCCcC-------CCCCcCHHHHHHHHHHHHHHHhc--cHHHHHHHH---H-HHhcc--Cc---cee-eeeC
Confidence            7653    111111       11245667777777788888763  333333332   2 22222  21   111 1222


Q ss_pred             cceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          351 IGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       351 ~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      +.++.+.+... ...+...+  +|+.+...                       +.+.|||.++..+|++|++.+++++++
T Consensus       301 Gl~~gve~~~~-~~~i~~~~~~~Gll~~~~-----------------------g~~vlr~~Ppl~it~~~i~~~~~~l~~  356 (364)
T PRK04013        301 GLMIGIVLKKP-VGKYVEELQNRGYLVHTA-----------------------GQRVIRLLPPLIISKDTMEEAKSAIEG  356 (364)
T ss_pred             cEEEEEEeCCc-HHHHHHHHHhCCcEEeeC-----------------------CCCEEEEeCCcccCHHHHHHHHHHHHH
Confidence            44455555321 23344433  56665321                       126899999999999999999999999


Q ss_pred             HHHHH
Q 040741          429 QVEKL  433 (457)
Q Consensus       429 ~~~~~  433 (457)
                      +++++
T Consensus       357 ~l~~~  361 (364)
T PRK04013        357 VINDI  361 (364)
T ss_pred             HHHHH
Confidence            99764

>PRK07482 hypothetical protein; Provisional

Probab=99.81  E-value=2.4e-17  Score=166.32  Aligned_cols=344  Identities=15%  Similarity=0.108  Sum_probs=207.4

Q ss_pred             ccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 040741           53 RIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTS  125 (457)
Q Consensus        53 ~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~  125 (457)
                      ....+.-|+|+.+.      +..+|++.+++.+.+.... ..+.     .++ ..+...++.++|++++..+.+.++|++
T Consensus        45 ~D~dG~~ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~~~~~~-----~~~-~~~~~~~lAe~L~~~~p~~~~~v~f~~  118 (461)
T PRK07482         45 TDAQGRRYIDAFAGLYCVNVGYGRTEVAEAIAEQAKELAYYHTY-----VGH-GTEASITLSKRIIDRAPAGMSKVYYGL  118 (461)
T ss_pred             EECCCCEEEEcccchhhhcCCCCCHHHHHHHHHHHHhcCccccc-----ccc-CCHHHHHHHHHHHHhCCCCcCEEEEeC
Confidence            33455568887654      3578999999999987641 1110     011 125667788888888754445699999


Q ss_pred             ChHHHHHHHHHHhhhhhc---C-CCCEEEEcCC-CCcchHHHHHHHH----hc--C---cEEEEEeCCC--C----C---
Q 040741          126 GATESNNVSIKGVMHFYK---D-KKRHVITTQT-EHKCVLDSCRHLQ----QE--G---FEITYLPVGA--D----G---  182 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~---~-~g~~vi~~~~-~h~~~~~~~~~~~----~~--G---~~v~~v~~~~--~----~---  182 (457)
                      |||+|++.|++....+..   . .+.+||.... .|.....+.....    ..  +   ..+..++.+.  .    +   
T Consensus       119 sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  198 (461)
T PRK07482        119 SGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSE  198 (461)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCH
Confidence            999999999998775431   1 2456666554 5554443322110    00  1   1122222221  1    0   


Q ss_pred             ----CCCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CC
Q 040741          183 ----IVNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VE  245 (457)
Q Consensus       183 ----~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~  245 (457)
                          .-+++++++++.    ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++. +|...  +.  ..
T Consensus       199 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~  278 (461)
T PRK07482        199 EQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHY  278 (461)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhc
Confidence                014677888773    45789999999888888865    8899999999999999999986 43221  11  12


Q ss_pred             CCcccEEEecccc-ccCC-CCceEEEEecCCCcccccccc-CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Q 040741          246 KWNVSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLIN-GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI  322 (457)
Q Consensus       246 ~~~~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~  322 (457)
                      ...+|+++++  | +.|. ..+|+++++++..+.+..... .+....+.. ...++..+++..++++.+++  +...++.
T Consensus       279 gv~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T-~~gnpl~~Aaa~a~L~~~~~--~~l~~~~  353 (461)
T PRK07482        279 GIEPDLITVA--KGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWT-YSGHPICAAAALANLDILER--ENLVGNA  353 (461)
T ss_pred             CCCCCEEEEc--cccccCccccceeeecHHHHHHHhcccccCCccccCCC-CCcCHHHHHHHHHHHHHHHh--CCHHHHH
Confidence            2358999887  9 4333 248888888765443321100 000000111 14566777777788888876  4555666


Q ss_pred             HHHHHHHHHHHhhc---CCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCC
Q 040741          323 TALHDRLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSAS  385 (457)
Q Consensus       323 ~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~  385 (457)
                      +++.+++.+.|.+.   .+.+   ++ ....+.++.+.+....            ...+...+  +|+.+..+.      
T Consensus       354 ~~~g~~l~~~L~~l~~~~~~v---~~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~------  423 (461)
T PRK07482        354 AEVGAYFRARLRAAFGDHPLV---GE-VRGVGMLAAVEFVADRDDRTPFDPALKIGPQVSAAALERGVIARAMP------  423 (461)
T ss_pred             HHHHHHHHHHHHHHHhcCCCE---EE-EeeceeEEEEEeccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCC------
Confidence            67777777766541   3322   11 1122444445553110            01222222  455543210      


Q ss_pred             CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       386 ~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                      ..+.+||.++..+|++|||+++++++++++++
T Consensus       424 ----------------~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~  455 (461)
T PRK07482        424 ----------------HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV  455 (461)
T ss_pred             ----------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                            12689999999999999999999999999876

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=99.81  E-value=8e-17  Score=161.49  Aligned_cols=335  Identities=15%  Similarity=0.168  Sum_probs=200.1

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEE-e
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PK-EIIF-T  124 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~-~i~~-t  124 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+... +..+    .... ..+...++.+++++.+..+  .+ .+.| +
T Consensus        36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~----~~~~-~~~~~~~lae~l~~~~~~~~~~~~~~~f~~  109 (425)
T PRK09264         36 EDGKEYIDFFAGAGALNYGHNNPVLKQALIDYLQRD-GITH----GLDM-HTTAKREFLETFEETILKPRGLDYKVQFTG  109 (425)
T ss_pred             CCCCEeeecccchhhccCCCCCHHHHHHHHHHHHhc-cccc----cccc-CcHHHHHHHHHHHHhhcCCcCCCceEEEeC
Confidence            344568886443      357899999999998752 1111    1011 1245566777777765322  22 4666 5


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHH----hc--C---cEEEEEeCCCC---CCCCHHHHHH
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQ----QE--G---FEITYLPVGAD---GIVNLDELRA  191 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~----~~--G---~~v~~v~~~~~---~~~d~~~le~  191 (457)
                      +|||+|++.|++....+  ..+.+||.... .|.....+.....    ..  |   ..+..+|.+..   ..-|++++++
T Consensus       110 ~sGseA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  187 (425)
T PRK09264        110 PTGTNAVEAALKLARKV--TGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEK  187 (425)
T ss_pred             CCHHHHHHHHHHHHHHh--cCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHH
Confidence            89999999999987754  33456665544 5555554433321    11  1   12344444311   0136788888


Q ss_pred             hcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEecc
Q 040741          192 AIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSG  256 (457)
Q Consensus       192 ~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~  256 (457)
                      .+.      ++...|+++.+....|.+.+    +++|.++|++||+++|+|++++ +|..    ..+.....+|+++++ 
T Consensus       188 ~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~-  266 (425)
T PRK09264        188 LLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLS-  266 (425)
T ss_pred             HHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEec-
Confidence            884      24678999999988887653    9999999999999999999996 3211    112223357887665 


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC-EIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al-~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                       |.+|+.|  +|+++++++. ..+.+...+      .. ...++..+++..+++ +.+.+  ....++.+++.+++++.|
T Consensus       267 -K~l~~~G~pigav~~~~~i-~~~~~~~~~------~T-~~gnp~~~aaa~a~l~~~~~~--~~l~~~~~~~g~~l~~~l  335 (425)
T PRK09264        267 -KSISGYGLPMALVLIKPEL-DVWKPGEHN------GT-FRGNNLAFVTATAALEEYWSD--DAFEKEVKAKGELVRERL  335 (425)
T ss_pred             -cccCCCccceEEEEEchhh-hccCCCccC------CC-CCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHH
Confidence             9666544  6999998764 332221111      11 133445555555666 33333  356666777777777766


Q ss_pred             hh---cCCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          334 KE---KLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       334 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      ++   .++.+.  .+ ....+.++.+.+.... ...+...+  +|+.+.+...                     ....||
T Consensus       336 ~~l~~~~~~~~--~~-vrg~Gl~~~i~l~~~~~~~~l~~~~~~~Gv~~~~~~~---------------------~~~~lr  391 (425)
T PRK09264        336 EEIAAKYPGLG--AE-VRGRGMMQGIDFGDGELAGKIAAEAFENGLIIETSGP---------------------EDEVVK  391 (425)
T ss_pred             HHHHHhCCCce--ec-ceecccEEEEEecChHHHHHHHHHHHHCCCEEeccCC---------------------CCCEEE
Confidence            54   133221  11 1122444455553221 22344444  5766643210                     126899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      |+++..+|++||++++++|+++++++
T Consensus       392 ~~p~l~~t~~ei~~~~~~l~~~l~~~  417 (425)
T PRK09264        392 LLPPLTIDEEELEEGLDILEEAVAEV  417 (425)
T ss_pred             EeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999876

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.81  E-value=6.2e-17  Score=162.84  Aligned_cols=340  Identities=14%  Similarity=0.109  Sum_probs=207.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+....-...     .+.. .+...++.++|++.++...+.++|+++||
T Consensus        51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-----~~~~-~~~~~~lAe~L~~~~p~~~~~v~f~~sGs  124 (453)
T PRK06943         51 RDGRRYLDAISSWWVNLFGHANPRINAALKDQLDTLEHAML-----AGCT-HEPAIELAERLAALTGGTLGHAFFASDGA  124 (453)
T ss_pred             CCCCEEEEcchHHHHhcCCCCCHHHHHHHHHHHHhcCCccc-----cccC-CHHHHHHHHHHHHhCCCCCCEEEEeCCCH
Confidence            345568887543      36789999999999875311000     0111 14556788888888764435699999999


Q ss_pred             HHHHHHHHHhhhhhc----CCCCEEEEcCC-CCcchHHHHHHHHh----cCc-----EEEEEeCCCC-C-----------
Q 040741          129 ESNNVSIKGVMHFYK----DKKRHVITTQT-EHKCVLDSCRHLQQ----EGF-----EITYLPVGAD-G-----------  182 (457)
Q Consensus       129 ~a~~~al~~~~~~~~----~~g~~vi~~~~-~h~~~~~~~~~~~~----~G~-----~v~~v~~~~~-~-----------  182 (457)
                      +|++.|++....++.    ..+.+||.... .|.....+......    .++     .+..++.+.. +           
T Consensus       125 eAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  204 (453)
T PRK06943        125 SAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVA  204 (453)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHH
Confidence            999999998764431    12456666555 45444443322210    011     1223332211 0           


Q ss_pred             CCCHHHHHHhcC---CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcc
Q 040741          183 IVNLDELRAAIR---PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNV  249 (457)
Q Consensus       183 ~~d~~~le~~i~---~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~  249 (457)
                      .-|+++++++++   ++...|+++. ++...|.+.|    ++++.++|++||+++|+|+++. +|...  +  ......+
T Consensus       205 ~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~P  284 (453)
T PRK06943        205 ARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWP  284 (453)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCC
Confidence            013577777775   4678889998 4777888765    8999999999999999999985 44321  1  1112358


Q ss_pred             cEEEecccc-ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          250 SLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       250 Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      |+++++  | +.|. ..+|+++++++..+.+.+....+....+.. ...++..+++..+.++.+++  +...++.+++.+
T Consensus       285 Divt~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~T-~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~G~  359 (453)
T PRK06943        285 DFLCLS--KGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHS-YTGNPLACRAALATLDLFAE--DDVLARNARKSA  359 (453)
T ss_pred             CeEeee--hhhccCcccceEEEEcHHHHHhhcccCccCCccCCCC-CCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence            999887  9 4443 248999998876554432110000000011 13466677777788888876  456667777777


Q ss_pred             HHHHHHhhc--CCCeEEeCCCCCcccceEEEEEcc-cc-c----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          328 RLLNGIKEK--LDGVVVNGSMERRYIGNLNLSFAY-VE-G----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       328 ~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      ++.+.|++.  .+.+.    .....+.++.+.+.. .+ .    ..+...+  +|+.+.+.                   
T Consensus       360 ~l~~~L~~l~~~~~v~----~vrG~Gl~~gvel~~~~~~~~~~~~~i~~~~~~~Gll~~~~-------------------  416 (453)
T PRK06943        360 RLRAALAPLAAHPQVR----HLRQRGTIFAFDVALDGDAARTFSRRFFEAALERELLLRPI-------------------  416 (453)
T ss_pred             HHHHHHHHHhcCCCEE----eEeccccEEEEEEccCCCcchHHHHHHHHHHHHCCcEEEec-------------------
Confidence            777777651  23321    111224444455531 11 1    1222222  56655321                   


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                           .+.+||+++..+|++|||+++++++++++++
T Consensus       417 -----g~~l~~~Ppl~it~~eid~~~~~l~~al~~~  447 (453)
T PRK06943        417 -----GTTVYLMPPYVLDDDEIAWLAERTRATLDAT  447 (453)
T ss_pred             -----CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence                 1569999999999999999999999999875

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=99.81  E-value=1.5e-16  Score=159.53  Aligned_cols=333  Identities=14%  Similarity=0.087  Sum_probs=199.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+.+.. ....     .....+...++.++|.+++.. ..+.++|+++|
T Consensus        30 ~dG~~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sG  103 (420)
T TIGR00700        30 VDGNRLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFT-HTCF-----MVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSG  103 (420)
T ss_pred             CCCCEEEECccCHHhccCCCCCHHHHHHHHHHHHhcc-Cccc-----cccCChHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence            345568886543      3578999999999987532 1110     111124456677778887752 23569999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHH-----hcCc-----EEEEEeCCCCCC-----------CC
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQ-----QEGF-----EITYLPVGADGI-----------VN  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~~~-----------~d  185 (457)
                      |+|++.|++....+. + +.+|+. ....|.....+.....     ..++     .+..++.+....           -+
T Consensus       104 seA~e~AlklAr~~t-g-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (420)
T TIGR00700       104 AEAVENAVKIARSYT-G-RPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGE  181 (420)
T ss_pred             HHHHHHHHHHHHHhc-C-CCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHH
Confidence            999999999876542 3 344554 4456666655543221     1111     122233221000           12


Q ss_pred             HHHHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CCcccE
Q 040741          186 LDELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KWNVSL  251 (457)
Q Consensus       186 ~~~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~~~Di  251 (457)
                      ++.+++.+.     ++...|+++.+...+|.+.|    +++|.++|++||+++|+|+++. ++..  .....  ...+|+
T Consensus       182 ~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi  261 (420)
T TIGR00700       182 LAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDL  261 (420)
T ss_pred             HHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCE
Confidence            556776652     46789999999988998877    8999999999999999999986 3221  11111  224787


Q ss_pred             EEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       252 ~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      ++  ++|.++ .-.+|+++++++..+.+.+...+.      . ...++..++++.++++.+.++  ...++.+++.++++
T Consensus       262 ~~--lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~------T-~~~~pl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~  330 (420)
T TIGR00700       262 IT--TAKSLADGLPLSGVTGRAEIMDAPAPGGLGG------T-YAGNPLACAAALAVLAIIESE--GLIERARQIGRLVT  330 (420)
T ss_pred             EE--eeccccCCcceEEEEecHHHHhhcCCCCcCC------C-CCcCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence            66  559544 234899999987666554322211      1 144566666677778776652  23344444444444


Q ss_pred             HHHhh---cCCCeEEeCCCCCcccceEEEEEccc----c----chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          331 NGIKE---KLDGVVVNGSMERRYIGNLNLSFAYV----E----GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       331 ~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      +.|++   .++.+..+.    ..+.++.+.+...    .    ...+...+  +||.+.++..+                
T Consensus       331 ~~L~~l~~~~~~~~~vr----g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f----------------  390 (420)
T TIGR00700       331 DRLTTLKAVDPRIGDVR----GLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF----------------  390 (420)
T ss_pred             HHHHHHHhhCCCEEEee----ccceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC----------------
Confidence            44433   144332221    1144444544211    1    12233323  68887664311                


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                           .+.|||+++..++++++++++++|.++++
T Consensus       391 -----~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       391 -----GNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             -----CCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence                 16899999888889999999999998874

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=99.80  E-value=4.7e-17  Score=162.85  Aligned_cols=334  Identities=16%  Similarity=0.140  Sum_probs=202.9

Q ss_pred             cCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCC
Q 040741           54 IAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSG  126 (457)
Q Consensus        54 ~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g  126 (457)
                      ...+.-|+|+.+.      +..+|++.+++.+.+.... ....     +....+...++.+.|.++++. ..+.++|++|
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~s  109 (421)
T PRK09792         36 DVEGNEYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQFT-HTAY-----QIVPYESYVTLAEKINALAPVSGQAKTAFFTT  109 (421)
T ss_pred             eCCCCEEEEccCchhhhcCCCCCHHHHHHHHHHHHhcc-Cccc-----CccCCHHHHHHHHHHHHhCCCCCCceEEEeCC
Confidence            3455568887543      3678999999999987531 1111     111124556777778887753 2346999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHH-----hcCc-----EEEEEeCCCC--CC---CCHHHHH
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQ-----QEGF-----EITYLPVGAD--GI---VNLDELR  190 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~-----~~G~-----~v~~v~~~~~--~~---~d~~~le  190 (457)
                      ||+|++.|++....+  ..+.+|+... ..|.....+.....     ..++     .+..++.+.+  +.   -|+++++
T Consensus       110 GseA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~  187 (421)
T PRK09792        110 GAEAVENAVKIARAH--TGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIE  187 (421)
T ss_pred             hHHHHHHHHHHHHHh--cCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHH
Confidence            999999999987754  2344566555 45665555443221     1111     1333443311  11   1357788


Q ss_pred             HhcC-----CCceEEEEecccccccccc-C---hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCC--CcccEEEecc
Q 040741          191 AAIR-----PDTGLISVMAVNNEIGVIQ-P---MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEK--WNVSLMSLSG  256 (457)
Q Consensus       191 ~~i~-----~~t~li~i~~~~~~~G~~~-~---l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~--~~~Di~~~s~  256 (457)
                      +.++     ++.+.|+++.+++++|... |   +++|.++|++||+++|+|+++. +|..  .+....  ..+|++++  
T Consensus       188 ~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~--  265 (421)
T PRK09792        188 RLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTM--  265 (421)
T ss_pred             HHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEe--
Confidence            8775     3568999999999999775 5   8999999999999999999986 3221  112221  24786555  


Q ss_pred             ccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          257 HKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       257 ~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      +|.+| .-.+|+++++++..+.+.+...+      .. ...++..+++..+.++.+.++  +..++.+++.+++.+.|+.
T Consensus       266 gK~l~~G~pigav~~~~~i~~~~~~~~~~------~T-~~gnpl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~  336 (421)
T PRK09792        266 AKSLAGGMPLSGVVGNANIMDAPAPGGLG------GT-YAGNPLAVAAAHAVLNIIDKE--SLCERANQLGQRLKNTLID  336 (421)
T ss_pred             ehhhcCCCceEEEEEcHHHHhccCCCCcC------CC-CCCCHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHH
Confidence            59443 33489999988766655432211      11 245556666666778877653  4455555666666555544


Q ss_pred             ---cCCCeEEeCCCCCcccceEEEEEcccc--------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          336 ---KLDGVVVNGSMERRYIGNLNLSFAYVE--------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       336 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                         .+|.+   .+ ....+.++.+.+...+        ...+...+  +|+.+....                     ..
T Consensus       337 l~~~~p~v---~~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~g---------------------~~  391 (421)
T PRK09792        337 AKESVPAI---AA-VRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCG---------------------AY  391 (421)
T ss_pred             HHHhCCCc---ce-ecccceEEEEEecCCccCCcchHHHHHHHHHHHHCCcEEeecC---------------------CC
Confidence               13432   11 1122455555554221        12233333  576663110                     11


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++.|||.++..++++||+++++++.++++
T Consensus       392 ~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        392 GNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             CCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            27999999998999999999999999874

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=4.6e-17  Score=162.44  Aligned_cols=341  Identities=13%  Similarity=0.112  Sum_probs=207.1

Q ss_pred             cCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           54 IAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        54 ~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ...+.-|||+.+.      +...|++.+++.+.+++.... .     ......+...++.++|.++++...+.++|+++|
T Consensus        36 D~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~-~-----~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SG  109 (422)
T PRK05630         36 LEDGSTVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMSHV-M-----FGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSG  109 (422)
T ss_pred             ECCCCEEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCCCc-c-----cCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCc
Confidence            3455678887543      357899999999998763211 0     000112456778888888875434579999999


Q ss_pred             HHHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHHhc-----C-----cEEEEEeCCCCCCCC-------
Q 040741          128 TESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQQE-----G-----FEITYLPVGADGIVN-------  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~~~-----G-----~~v~~v~~~~~~~~d-------  185 (457)
                      |+|++.|++....+...    .+.+|+.... .|.....+.......     .     ..+..+|.+.....+       
T Consensus       110 seA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  189 (422)
T PRK05630        110 SVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEY  189 (422)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHH
Confidence            99999999987765421    2355665554 555444443221100     0     112333332111111       


Q ss_pred             HHHHHHhcCCCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcccEEEec
Q 040741          186 LDELRAAIRPDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVSLMSLS  255 (457)
Q Consensus       186 ~~~le~~i~~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~Di~~~s  255 (457)
                      .+.+++.+.++...|+++.+ ....|.+.|    +++|.++|++||+++|+|+++. +|..  .  .......+|+++++
T Consensus       190 ~~~~~~~~~~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~g  269 (422)
T PRK05630        190 LRSLELLIDETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVG  269 (422)
T ss_pred             HHHHHHHHhhceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeee
Confidence            34566667678889999985 777787755    8899999999999999999985 3321  1  11122357888665


Q ss_pred             ccccc-CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIY-GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       256 ~~K~~-g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                        |.+ |. ..+|+++++++..+.+......+....+ .....++..+++..++++.++++  ...++.+++.+++++.|
T Consensus       270 --K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~h~-~T~~g~Pla~aaa~aaL~~l~~~--~~~~~~~~~g~~l~~~L  344 (422)
T PRK05630        270 --KALTGGFMSFAATLCTDKVAQLISTPNGGGALMHG-PTFMANPLACAVAHASLEIIETG--MWRKQVKRIEAELIAGL  344 (422)
T ss_pred             --chhhcCccccceeeccHHHHHHHhccCCCCccccC-CCCcCCHHHHHHHHHHHHHHHhC--cHHHHHHHHHHHHHHHH
Confidence              943 32 3368888887655444211000000000 11246677788788888888763  44567777778887777


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      +. +.....+++ ....+.++.+.+... ....+...+  +|+.+.+.                        .+.+||.+
T Consensus       345 ~~-l~~~~~v~~-vRg~Gl~~~ie~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~l~~~P  398 (422)
T PRK05630        345 SP-LAHLPGVAD-VRVLGAIGVVEMEQPVDMEEATQAAVDHGVWLRPF------------------------GRLVYVMP  398 (422)
T ss_pred             HH-hhcCCCeee-eeccccEEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEEC
Confidence            65 321111111 112245555555422 223444444  56665321                        16899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~  431 (457)
                      +..+|++|||+++++|+++++
T Consensus       399 pL~it~~~i~~~~~~l~~al~  419 (422)
T PRK05630        399 PYITTSEQIAQICAALAAAVK  419 (422)
T ss_pred             CccCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999986

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=1.8e-16  Score=158.59  Aligned_cols=333  Identities=15%  Similarity=0.124  Sum_probs=204.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+.+.. ....     .....+...++.++|.++++. ..+.++|+++|
T Consensus        37 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sG  110 (421)
T PRK06777         37 VEGREYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQFT-HTAY-----QIVPYASYVTLAERINALAPIDGPAKTAFFTTG  110 (421)
T ss_pred             CCCCEEEEcccCHHhhccCCCCHHHHHHHHHHHhhcc-cccc-----cccCChHHHHHHHHHHHhCCCCCCceEEEeCCc
Confidence            345568887543      3678999999999987642 1110     111123456777788888753 23569999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHHh-----cCc-----EEEEEeCCCC--C---CCCHHHHHH
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQQ-----EGF-----EITYLPVGAD--G---IVNLDELRA  191 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~-----~G~-----~v~~v~~~~~--~---~~d~~~le~  191 (457)
                      |+|++.|++....+  ..+.+|+... ..|.....+......     .++     .+..++.+..  +   .-|++++++
T Consensus       111 seA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~  188 (421)
T PRK06777        111 AEAVENAVKIARAY--TGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVER  188 (421)
T ss_pred             HHHHHHHHHHHHHh--hCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHH
Confidence            99999999987654  2344565544 456665555432210     011     1122222211  1   123667787


Q ss_pred             hcC-----CCceEEEEeccccccccc-cC---hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CCcccEEEeccc
Q 040741          192 AIR-----PDTGLISVMAVNNEIGVI-QP---MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KWNVSLMSLSGH  257 (457)
Q Consensus       192 ~i~-----~~t~li~i~~~~~~~G~~-~~---l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~~~Di~~~s~~  257 (457)
                      .+.     ++...|+++.+.+..|.. .|   +++|.++|++||+++|+|+++. +|..  .+...  ...+|+++  ++
T Consensus       189 ~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~--~s  266 (421)
T PRK06777        189 LFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLIT--MA  266 (421)
T ss_pred             HHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEe--ee
Confidence            764     356889999998888865 44   8999999999999999999987 2211  11112  22478765  56


Q ss_pred             cccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          258 KIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       258 K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      |.+| .-.+|+++++++..+.+.+...+      .. ...++..+++..++++.+++  +.+.++.+++.+++++.|++.
T Consensus       267 K~l~~G~pigav~~~~~i~~~~~~~~~~------~T-~~~~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l  337 (421)
T PRK06777        267 KSLGGGMPISAVVGRAEVMDAPAPGGLG------GT-YAGNPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLEKA  337 (421)
T ss_pred             hhhcCCCceEEEEEcHHHHhccCCCCCC------CC-CCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHH
Confidence            9554 22389999987765555432211      11 24566777777788887765  567777788888888877661


Q ss_pred             ---CCCeEEeCCCCCcccceEEEEEccc----cchHHHhc----c--cCeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741          337 ---LDGVVVNGSMERRYIGNLNLSFAYV----EGESLLMG----L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAH  403 (457)
Q Consensus       337 ---~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~  403 (457)
                         .+.+..+.    ..+.++.+.+...    ....+...    +  +||.+.++...                     .
T Consensus       338 ~~~~~~i~~vr----g~G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~---------------------g  392 (421)
T PRK06777        338 KASCPAIVDIR----ARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH---------------------G  392 (421)
T ss_pred             HHhCCCeEEec----CceEEEEEEEecCccCCccHHHHHHHHHHHHhCCeEEeecCCC---------------------C
Confidence               23222221    1244444444321    11122222    2  67777654211                     1


Q ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          404 TSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       404 ~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +.+||.++...+++++|+++++|++++.
T Consensus       393 ~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        393 NVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            6899999988999999999999998864

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=9e-17  Score=162.13  Aligned_cols=343  Identities=14%  Similarity=0.148  Sum_probs=209.2

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....-..     ..+.. .+...++.+.|++++....+.++|++|||
T Consensus        53 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~-----~~~~~-~~~~~~lae~L~~~~p~~~~~v~f~~SGs  126 (460)
T PRK06916         53 VNGNEYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAHST-----LLGLA-NVPSILLAEKLIEVVPEGLKKVFYSDSGA  126 (460)
T ss_pred             CCCCEEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCCcc-----ccccC-CHHHHHHHHHHHHhCCCCCCEEEEeCCcH
Confidence            345568887543      4678999999999987632110     01111 24556788888888764435799999999


Q ss_pred             HHHHHHHHHhhhhhc----CCCCEEEEcCC-CCcchHHHHHHHHhcC---------cEEEEEeCCC------CC------
Q 040741          129 ESNNVSIKGVMHFYK----DKKRHVITTQT-EHKCVLDSCRHLQQEG---------FEITYLPVGA------DG------  182 (457)
Q Consensus       129 ~a~~~al~~~~~~~~----~~g~~vi~~~~-~h~~~~~~~~~~~~~G---------~~v~~v~~~~------~~------  182 (457)
                      +|++.|++....+..    ..+.+||.... .|.....+........         ..+..+|.+.      ++      
T Consensus       127 eAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~  206 (460)
T PRK06916        127 TAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIV  206 (460)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHH
Confidence            999999998775432    22356665554 5555544443221110         1122333221      00      


Q ss_pred             CCCHHHHHHhcC---CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CCCCcc
Q 040741          183 IVNLDELRAAIR---PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VEKWNV  249 (457)
Q Consensus       183 ~~d~~~le~~i~---~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~~~~~  249 (457)
                      ..|++++++.++   ++...|+++. +....|.+.|    ++++.++|++||+++|+|+++. +|...  +.  .....+
T Consensus       207 ~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~P  286 (460)
T PRK06916        207 KKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTP  286 (460)
T ss_pred             HHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCC
Confidence            123567777775   5678889998 5777887765    8999999999999999999985 43221  11  122358


Q ss_pred             cEEEecccc-ccCC-CCceEEEEecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++++  | +.|. ..+|+++++++..+.+.+.... .....+... +.++..+++..++++.+.+  +...++.+++.
T Consensus       287 Div~~g--K~l~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~l~~l~~--~~l~~~~~~~g  361 (460)
T PRK06916        287 DIMTAG--KGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSY-TGNPLGCAVALANLELYEK--TNLIEQVARKT  361 (460)
T ss_pred             Ceeeee--hhhhcCccccceeeecHHHHHHhhccccccCccccCCCC-CCCHHHHHHHHHHHHHHHh--ccHHHHHHHHH
Confidence            998776  9 4443 2589999987755443221100 000001111 3366667777778887765  45667788888


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      +++++.|++ +....++++ ....+.++.+.+....            ...+...+  +|+.+.+.              
T Consensus       362 ~~l~~~l~~-l~~~~~v~~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~--------------  425 (460)
T PRK06916        362 EYVATQLED-LFALKHVGD-IRQLGLMVGIELVKNKETKEPFEWTERVGVQVCKRSRELGMLTRPL--------------  425 (460)
T ss_pred             HHHHHHHHH-hhcCCCeEE-eecCCceeeEEeecccccccCCCchhhHHHHHHHHHHHCCeEEEec--------------
Confidence            888888876 322211111 1122444444442110            01233333  56665421              


Q ss_pred             HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                                .+.+||.++..+|++|||+++++++++++++-
T Consensus       426 ----------g~~l~~~Ppl~it~~~id~~~~~l~~~l~~~~  457 (460)
T PRK06916        426 ----------GNTIVFMPPLASTIDELDEMLRILYKAISDVT  457 (460)
T ss_pred             ----------CCEEEEeCCcccCHHHHHHHHHHHHHHHHhhc
Confidence                      16899999999999999999999999998653

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=99.80  E-value=1.8e-16  Score=159.84  Aligned_cols=334  Identities=13%  Similarity=0.131  Sum_probs=202.6

Q ss_pred             CCcEEecCCCC-----CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           56 GRPLYLDMQAT-----TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        56 ~~~i~l~~~~~-----~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      .+.-|||+.+.     +...|++.+++.+.+.... ...+   .   ...+...++.+.|+++++...+.++|++||++|
T Consensus        70 dG~~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~---~---~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseA  142 (459)
T PRK06082         70 DGKKYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLP-FSPR---R---FTNETAIECAEKLTEIAGGELNRVLFAPGGTSA  142 (459)
T ss_pred             CCCEEEEcccHhhcccCCCCHHHHHHHHHHHHhCC-CccC---c---cCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHH
Confidence            44568887643     3478999999999987532 1110   1   112567788899999986444579999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEE-EcCCCCcchHHHHHHHHhc----Cc-----EEEEEeCCCC-----CCC------CHHHH
Q 040741          131 NNVSIKGVMHFYKDKKRHVI-TTQTEHKCVLDSCRHLQQE----GF-----EITYLPVGAD-----GIV------NLDEL  189 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi-~~~~~h~~~~~~~~~~~~~----G~-----~v~~v~~~~~-----~~~------d~~~l  189 (457)
                      ++.|++....+  ..+.+|+ .....|.....++......    ++     .+..++....     ...      +++++
T Consensus       143 ve~AlklAr~~--tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  220 (459)
T PRK06082        143 IGMALKLARHI--TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYL  220 (459)
T ss_pred             HHHHHHHHHHh--cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHH
Confidence            99999977654  2334554 4555677665555433110    00     1223332110     001      13557


Q ss_pred             HHhcC--CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhc-CCCc--c--cCCCCcccEEEeccccc
Q 040741          190 RAAIR--PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQAL-GKIP--V--DVEKWNVSLMSLSGHKI  259 (457)
Q Consensus       190 e~~i~--~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~-g~~~--~--~~~~~~~Di~~~s~~K~  259 (457)
                      ++.++  ++...|+++.+.+..+.+.|   +++|.++|++||+++|+|++++. |...  +  ......+|+++++  |.
T Consensus       221 ~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~g--Kg  298 (459)
T PRK06082        221 EYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIG--KG  298 (459)
T ss_pred             HHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEec--cc
Confidence            77775  35788899998876333444   89999999999999999999863 3221  1  1112248988855  94


Q ss_pred             c-CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741          260 Y-GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       260 ~-g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                      + |. ..+|+++++++......    .. ..  ......++..+++..++++.+++  +...++.+++.+++++.|++..
T Consensus       299 l~gG~~P~~av~~~~~i~~~~~----~~-~~--~~T~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~  369 (459)
T PRK06082        299 LGGGLVPIAAMITKDKYNTAAQ----IS-LG--HYTHEKSPLGCAAALATIEVIEQ--EGLLEKVKADSQFMRERLLEMK  369 (459)
T ss_pred             ccCCCCcceEEEEcHHHHhhcc----CC-CC--CCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence            4 32 24899998876432211    10 00  11224566667777778888765  3567777777788877776611


Q ss_pred             CCeEEeCCCCCcccceEEEEEcccc---------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          338 DGVVVNGSMERRYIGNLNLSFAYVE---------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ....++++ ....+.++.+.+....         ...+...+  +|+.+.+.                       ..+.|
T Consensus       370 ~~~~~i~~-vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----------------------~~~~i  425 (459)
T PRK06082        370 AKYPLIGD-VRGIGLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVS-----------------------QGNVI  425 (459)
T ss_pred             hhCCCeee-eeeccceeEEEEccCccccCccHHHHHHHHHHHHhCCCEEEec-----------------------CCCEE
Confidence            11111221 1122445555553110         01122222  45554321                       12789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||++...+|++|||+++++++++++++
T Consensus       426 ~~~Ppl~it~~eid~~~~~l~~~l~~~  452 (459)
T PRK06082        426 QLSPPLIITREELTQALAILEEAIAKI  452 (459)
T ss_pred             EEeCCCccCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999876

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.80  E-value=1.4e-16  Score=160.81  Aligned_cols=341  Identities=11%  Similarity=0.096  Sum_probs=207.8

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.... ....      ++. .+...++.++|++++....+.++|+++|
T Consensus        44 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~~~~~------~~~-~~~~~~lae~L~~~~p~~~~~v~f~~sG  116 (466)
T PRK07030         44 FEGKRYLDAVSSWWVNVFGHANPRINQRIKDQVDQLEHVILA------GFS-HEPVIELSERLVKITPPGLSRCFYADNG  116 (466)
T ss_pred             CCCCEEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcCCcccc------ccC-CHHHHHHHHHHHHhCCCCcCEEEEeCCc
Confidence            345568887543      3578999999999987531 1110      111 2556778888888875434579999999


Q ss_pred             HHHHHHHHHHhhhhh---cC-CCCEEEEcCC-CCcchHHHHHHHHhc----Cc-----EEEEEeCCCC-----C------
Q 040741          128 TESNNVSIKGVMHFY---KD-KKRHVITTQT-EHKCVLDSCRHLQQE----GF-----EITYLPVGAD-----G------  182 (457)
Q Consensus       128 T~a~~~al~~~~~~~---~~-~g~~vi~~~~-~h~~~~~~~~~~~~~----G~-----~v~~v~~~~~-----~------  182 (457)
                      ++|++.|++....++   +. .+.+||.... .|.....+.......    ++     .+..+|.+..     +      
T Consensus       117 sEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~  196 (466)
T PRK07030        117 SSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEH  196 (466)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHH
Confidence            999999999876542   11 2345665554 555554444322110    00     1222332211     0      


Q ss_pred             -CCCHHHHHHhcC---CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741          183 -IVNLDELRAAIR---PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN  248 (457)
Q Consensus       183 -~~d~~~le~~i~---~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~  248 (457)
                       .-+++++++.+.   ++...|+++. ++...|.+.|    +++|.++|++||+++|+|+++. +|...  +  ......
T Consensus       197 ~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~  276 (466)
T PRK07030        197 SRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIR  276 (466)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCC
Confidence             113566777774   4678888998 5777788765    8899999999999999999985 44321  1  112235


Q ss_pred             ccEEEecccc-ccCC-CCceEEEEecCCCcccccccc-CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLIN-GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      +|+++++  | +.|. ..+|+++++++..+.+..... .+....+.. ...++..+++..++++.+++  +...++.+++
T Consensus       277 PDiv~~g--Kgl~gG~~Pi~av~~~~ei~~~~~~~~~~~~~~~h~~T-~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~  351 (466)
T PRK07030        277 PDFLCLS--KALTGGYLPLAAVLTTDTVYQAFYDDYPTLRAFLHSHS-YTGNPLACAAALATLDIFEQ--DNVIENNRAL  351 (466)
T ss_pred             CCEEeee--hhccCCcccceEEEecHHHHHHHhcccccccccccCCC-CCCCHHHHHHHHHHHHHHHh--cCHHHHHHHH
Confidence            8999887  9 4443 248999998775544321100 000000011 13466777777788888876  4566777888


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--------c----hHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--------G----ESLLMGL--KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      .+++++.|++ +.....+++ ....+.++.+.+....        .    ..+...+  +|+.+.+.             
T Consensus       352 G~~l~~~L~~-l~~~~~v~~-vrG~Gl~~gie~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-------------  416 (466)
T PRK07030        352 ARRMAEATAH-LADHPHVAE-VRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHALERGALLRPL-------------  416 (466)
T ss_pred             HHHHHHHHHH-HhcCCCEEE-eEeceeEEEEEeccCccccccCcchhHHHHHHHHHHHHCCeEEEec-------------
Confidence            8888887766 322111111 1122444444442110        0    1222222  46555321             


Q ss_pred             HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                 .+.+||.++..+|++|||.++++++++++++
T Consensus       417 -----------g~~i~~~Ppl~it~~eid~~~~~l~~al~~~  447 (466)
T PRK07030        417 -----------GSVVYFLPPYVITPEQIDFLAEVASEGIDIA  447 (466)
T ss_pred             -----------CCEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence                       1689999999999999999999999999987

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.80  E-value=8.8e-17  Score=169.74  Aligned_cols=292  Identities=13%  Similarity=0.103  Sum_probs=216.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~  174 (457)
                      ..+..+..-+++.++++++|.+..++.+..++|.+.++++++... .++++++|++++..||.....++ +++..|++++
T Consensus       104 sQG~Le~l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~v~  182 (939)
T TIGR00461       104 SQGRLEALLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFNV-SKKKANKFFVAKDLHPQTKSVLHTRAKPFGIEVI  182 (939)
T ss_pred             hhHHHHHHHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHHh-hcCCCCEEEECCCCCcchHHHHHHHHHhcCcEEE
Confidence            445568888999999999999988899999999998887776542 11345899999999999998877 5677799998


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      .++        +++|++.+  ++..+++..+ |..|.+.++++|.+++|++|.+++++.-.........+.++|+|++++
T Consensus       183 ~~~--------~~~l~~~~--~~~~v~~q~P-n~~G~ied~~~i~~~~h~~gal~~~~ad~~al~ll~~Pge~GaDi~vg  251 (939)
T TIGR00461       183 VVD--------CSDIKKAV--DVFGCLLQYP-ATDGSILDYKQLIDALHSHKSLVSVAADLMALTLLTPPGHYGADIVLG  251 (939)
T ss_pred             EEc--------HHHHhhcC--CEEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechHHhCCcCCHHHcCCcEEee
Confidence            874        45676666  5666666666 458999999999999999999999987777666667778899999988


Q ss_pred             ccccc-----cCCCCceEEEEecCCCccccccccCC-----------------ccccccccCCCChhHHHHHHH---HH-
Q 040741          255 SGHKI-----YGPKGVGALYMRRRPRIRVEPLINGG-----------------GQERGIRSGTLPTPLIVGFGS---AC-  308 (457)
Q Consensus       255 s~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~t~~~~~~~al~~---al-  308 (457)
                      +.+++     ||.++.|++.+++++...+...+.|.                 .++.+...++.|+....++.+   ++ 
T Consensus       252 ~~q~fg~p~g~GGP~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtSNICt~qaL~a~~a~~Y  331 (939)
T TIGR00461       252 SSQRFGVPMGYGGPHAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATSNICTAQVLLANVASSY  331 (939)
T ss_pred             CCCccCCCCCCCCCceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCcchhHHHHHHHHHHHHH
Confidence            88875     45566899999988766655443331                 112233456766654444433   32 


Q ss_pred             -H-HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCC
Q 040741          309 -E-IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSA  384 (457)
Q Consensus       309 -~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~  384 (457)
                       . +..+++.++.++...++.++.+.|.+  .|+++..+   .+...+.+.+...+.+++...+  +||.++..      
T Consensus       332 ~~~~G~~GL~~iA~~~~~~a~~l~~~L~~--~G~~~~~~---~fF~~~~v~~~~~~~~~i~~~~~~~gi~l~~~------  400 (939)
T TIGR00461       332 CVYHGPKGLKNIARRIHSLTSILANGLEN--DPHELINK---TWFDTLTVKVGNGISSELLKAAEEFNINLRAV------  400 (939)
T ss_pred             HHHHCHHHHHHHHHHHHHHHHHHHHHHHh--CCCcccCC---CccceEEEEeCCCCHHHHHHHHHHCCCeeeec------
Confidence             2 22356899999999999999999998  68888654   3344455555433456666666  57665421      


Q ss_pred             CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                                       ..+.+++++...+|++||+.+++.+.
T Consensus       401 -----------------~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       401 -----------------DTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             -----------------CCCEEEEEeecCCCHHHHHHHHHHhc
Confidence                             12689999999999999999999995

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>PRK07480 putative aminotransferase; Validated

Probab=99.80  E-value=6.4e-17  Score=162.87  Aligned_cols=343  Identities=16%  Similarity=0.117  Sum_probs=204.2

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+....-..   . .++. ..+...++.++|+++++...+.++|++|||
T Consensus        47 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~---~-~~~~-~~~~~~~lae~L~~~~p~~~~~v~f~~SGs  121 (456)
T PRK07480         47 SEGNKILDGMAGLWCVNVGYGRKELADAAARQMRELPYYN---T-FFKT-THPPAIELAAKLAEVAPPGFNHVFFTNSGS  121 (456)
T ss_pred             CCCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcCCcc---c-cccc-CCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            445568887543      3678999999999987532110   0 0011 125677788888888864445799999999


Q ss_pred             HHHHHHHHHhhhhhc---CC-CCEEEEcC-CCCcchHHHHHHHH------hcCc---EEEEEeCCCCC----CCC-----
Q 040741          129 ESNNVSIKGVMHFYK---DK-KRHVITTQ-TEHKCVLDSCRHLQ------QEGF---EITYLPVGADG----IVN-----  185 (457)
Q Consensus       129 ~a~~~al~~~~~~~~---~~-g~~vi~~~-~~h~~~~~~~~~~~------~~G~---~v~~v~~~~~~----~~d-----  185 (457)
                      +|++.|++....+..   .+ +.+||... ..|.....+.....      ..|.   .+..++.+...    ..+     
T Consensus       122 eA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  201 (456)
T PRK07480        122 EANDTVLRMVRHYWALKGKPQKKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFG  201 (456)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHH
Confidence            999999998776532   12 34566544 45655544433210      0010   11222211100    001     


Q ss_pred             ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccC--CCCcc
Q 040741          186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDV--EKWNV  249 (457)
Q Consensus       186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~--~~~~~  249 (457)
                         ++.+++.+.    ++...|+++.++...|.+.|    +++|.++|++||+++|+|+++. +|...  +..  ....+
T Consensus       202 ~~~~~~l~~~~~~~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~P  281 (456)
T PRK07480        202 LAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKP  281 (456)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCC
Confidence               356665552    46789999999888888877    8999999999999999999985 54321  111  22347


Q ss_pred             cEEEecccc-ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH-HHHH
Q 040741          250 SLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI-TALH  326 (457)
Q Consensus       250 Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~-~~~~  326 (457)
                      |+++++  | +.|. ..+|+++++++..+.+... .+ ....+. ..+.++..+++..++++.+++  +...++. +++.
T Consensus       282 Div~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~-~~-~~~~~~-T~~gnpl~~Aaa~a~L~~l~~--~~l~~~~~~~~g  354 (456)
T PRK07480        282 DLMTIA--KGLTSGYIPMGAVGVGDRVAEVLIEE-GG-EFNHGF-TYSGHPVAAAVALANLRILRD--EGIVERVRDDTG  354 (456)
T ss_pred             Ceeeee--hhhccCCccceEEEEcHHHHHHHhcC-CC-CcccCC-CCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence            888776  9 4332 2479999887654443100 00 000011 124567777777788888876  3455556 3666


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc------------hHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG------------ESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      +++.+.|++ +....++++ ....+.++.+.+.....            ..+...+  +|+.+.+.              
T Consensus       355 ~~l~~~l~~-l~~~~~i~~-vrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~--------------  418 (456)
T PRK07480        355 PYLQKRLRE-LADHPLVGE-VRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFANGLIMRAV--------------  418 (456)
T ss_pred             HHHHHHHHH-hhcCCCeee-EEeecceEEEEEeccccccccCcchhhHHHHHHHHHHHCCcEEeec--------------
Confidence            666666655 322111111 11224444555521100            1122222  46555321              


Q ss_pred             HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                .+.+||.++..+|++|||++++++++++++++.
T Consensus       419 ----------~~~l~~~Ppl~it~~eid~~~~~l~~al~~~~~  451 (456)
T PRK07480        419 ----------GDRMIISPPLVITHAEIDELVEKARKALDATAA  451 (456)
T ss_pred             ----------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                      167999999999999999999999999988743

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=99.79  E-value=1.3e-16  Score=160.83  Aligned_cols=342  Identities=11%  Similarity=0.073  Sum_probs=202.8

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-----CCCcEEE
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-----SPKEIIF  123 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-----~~~~i~~  123 (457)
                      ..+.-|||+.+.      +...|++.+++.+.+....-. ..    .+.. .+...++.+.|.+++..     +.+.++|
T Consensus        61 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~-~~----~~~~-~~~~~~lae~L~~~~p~~~~~~~~~~v~f  134 (472)
T PRK08742         61 HDGRRYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQV-ML----AGFT-HEPAVQLAEQLLAIAPRQDGRAPLSKVFY  134 (472)
T ss_pred             CCCCEEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCc-cc----cccC-CHHHHHHHHHHHHhCCCcccCCCCCEEEE
Confidence            345568887543      367899999999988653110 00    0111 14556777888887753     2346999


Q ss_pred             eCChHHHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHHhc----Cc-----EEEEEeCCCCC-------
Q 040741          124 TSGATESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQQE----GF-----EITYLPVGADG-------  182 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~~~----G~-----~v~~v~~~~~~-------  182 (457)
                      +++||+|++.|++....++..    .+.+||.... .|.....+.......    ++     .+..++.+...       
T Consensus       135 ~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~  214 (472)
T PRK08742        135 ADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQS  214 (472)
T ss_pred             eCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCC
Confidence            999999999999988766421    2356666555 455544443321100    00     12233322110       


Q ss_pred             -----CCCHHHHHHhcC---CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cC
Q 040741          183 -----IVNLDELRAAIR---PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DV  244 (457)
Q Consensus       183 -----~~d~~~le~~i~---~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~  244 (457)
                           ..+++.+++.+.   ++...|+++. +....|.+.|    ++++.++|++||+++|+|+++. +|...  +  ..
T Consensus       215 ~~~~~~~~~~~l~~~~~~~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~  294 (472)
T PRK08742        215 AEDYALQAADALQALFEQSPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQ  294 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHh
Confidence                 013566777774   4678888888 5777787765    8999999999999999999986 44321  1  11


Q ss_pred             CCCcccEEEecccc-ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Q 040741          245 EKWNVSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI  322 (457)
Q Consensus       245 ~~~~~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~  322 (457)
                      ....+|+++++  | +.|. ..+|+++++++..+.+......+....+.. ...++..+++..++++.+++  +...++.
T Consensus       295 ~gv~PDiv~~g--Kgl~gG~~Plaav~~~~ei~~~~~~~~~~~~~~h~~T-~~gnpl~~Aaa~a~L~~i~~--~~l~~~~  369 (472)
T PRK08742        295 AGVMPDLLCLS--KGLTGGFLPLSAVLATQQLYDAFLDDSRERAFLHSHS-YTGNPLACAAALATLDIFAD--DDVIARN  369 (472)
T ss_pred             cCCCCCEEEEc--ccccCCCCCcceeeccHHHHHHhhccCccCccCcCCC-CCccHHHHHHHHHHHHHHHH--CCHHHHH
Confidence            22358999887  9 4333 248999998775444322110000000111 13466677777788888876  3445555


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--------c----hHHHhcc--cCeEecccCccCCCCCCh
Q 040741          323 TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--------G----ESLLMGL--KEVAVSSGSACTSASLEP  388 (457)
Q Consensus       323 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~l--~~i~~~~g~~~~~~~~~~  388 (457)
                      +++.+++++.++. +....++++ ....+.++.+.+....        .    ..+...+  +|+.+.+.          
T Consensus       370 ~~~g~~l~~~~~~-~~~~~~i~d-vRG~Gl~~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~----------  437 (472)
T PRK08742        370 QPTAARMTQLAAQ-IGEHPHVAD-VRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL----------  437 (472)
T ss_pred             HHHHHHHHHHHHH-HhcCCCeee-EeccceEEEEEeccCccccccCCchhHHHHHHHHHHHHCCeEEEec----------
Confidence            5666666554443 221111221 1222444555553110        0    1122222  56665421          


Q ss_pred             hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          389 SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       389 ~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                    .+.|||.++..+|++|||+++++|+++++++
T Consensus       438 --------------g~vi~~~PpL~it~~ei~~~~~~l~~~l~~~  468 (472)
T PRK08742        438 --------------GDVLYWMPPYCVDEAQLALLADTTRHAIDEA  468 (472)
T ss_pred             --------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                          1689999999999999999999999999875

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=99.79  E-value=3.6e-16  Score=157.05  Aligned_cols=333  Identities=17%  Similarity=0.177  Sum_probs=202.1

Q ss_pred             CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+..      .-.|++.+++.+.+.... .... .   .+ ..+...++.++|.+.++.+ .+.++|+++|
T Consensus        51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~-~---~~-~~~~~~~lAe~L~~~~p~~~~~~v~f~~SG  124 (441)
T PRK05769         51 VDGNVYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFL-HYSL-T---DF-YYEPAVELAERLVEIAPGGFEKKVFFTNSG  124 (441)
T ss_pred             CCCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcc-CccC-c---cc-CCHHHHHHHHHHHHhCCCCCCCEEEECCch
Confidence            3455688875542      467999999999987531 1000 0   01 1245667888888887532 3569999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHh-----cC-----cEEEEEeCCCCCC-------------
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQ-----EG-----FEITYLPVGADGI-------------  183 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~-----~G-----~~v~~v~~~~~~~-------------  183 (457)
                      |+|++.|++....+  ..+++|+.... .|.....+......     .+     ..+..++.+....             
T Consensus       125 sEA~e~AlklAr~~--tgr~~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (441)
T PRK05769        125 TESNEAAIKIARYH--TGRKYIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGN  202 (441)
T ss_pred             HHHHHHHHHHHHHH--hCCCeEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHH
Confidence            99999999987754  33456665544 55555544432110     00     1233333321100             


Q ss_pred             CCHHHHHH-hc-----CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCCC--Cc
Q 040741          184 VNLDELRA-AI-----RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVEK--WN  248 (457)
Q Consensus       184 ~d~~~le~-~i-----~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~~--~~  248 (457)
                      -+++.+++ .+     .++...|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|...  +....  ..
T Consensus       203 ~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~  282 (441)
T PRK05769        203 AVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVE  282 (441)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCC
Confidence            01344665 22     245788999999998999988    9999999999999999999987 33221  11122  24


Q ss_pred             ccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       249 ~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      +|+++++  |.+| ..++|+++++++..... ....+      ... ..++..+++..++++.+++   ...++.+++.+
T Consensus       283 pDivt~~--K~l~~G~p~gav~~~~~i~~~~-~~~~~------~T~-~g~p~~~aaa~a~L~~l~~---~~~~~~~~~g~  349 (441)
T PRK05769        283 PDIITLA--KAIAGGLPLGAVIGRAELMFLP-PGSHA------NTF-GGNPVAAAAALATLEELEE---GLLENAQKLGE  349 (441)
T ss_pred             CCEEEEc--ccccCCcccEEEEEehhhhhcC-CCCCC------CCC-CcCHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            6888655  9443 33479999887654322 11111      111 2355666667777877764   66778888888


Q ss_pred             HHHHHHhhcCC-CeEEeCCCCCcccceEEEEEcccc-------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          328 RLLNGIKEKLD-GVVVNGSMERRYIGNLNLSFAYVE-------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       328 ~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      ++++.|++ +. ...++++ ....+.++.+.+....       ...+...+  +|+.+.+.                   
T Consensus       350 ~l~~~L~~-l~~~~~~~~~-vrg~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~Gil~~~~-------------------  408 (441)
T PRK05769        350 YLRKELKE-LKEKYEFIGD-VRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGA-------------------  408 (441)
T ss_pred             HHHHHHHH-HHHhCCCeee-eecceEEEEEEeccCCccccHHHHHHHHHHHHhCCcEEecC-------------------
Confidence            88888765 21 1112211 1122444445553210       11222222  46655321                   


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                          +...+||+++..+|++|||+++++++++++++
T Consensus       409 ----~~~~lr~~p~l~~t~~~id~~~~~l~~~l~~~  440 (441)
T PRK05769        409 ----GKSAIRIIPPLIITEEEADIGLEILEEAIKEL  440 (441)
T ss_pred             ----CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence                12689999999999999999999999998753

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.79  E-value=4.2e-17  Score=153.53  Aligned_cols=303  Identities=16%  Similarity=0.135  Sum_probs=201.3

Q ss_pred             HHHHHHHHHHHHHhC----CCC--C-cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741          101 VAVETARSQIADLIG----ASP--K-EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus       101 ~~~~~~~~~la~~~g----~~~--~-~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      ....++...+.+..+    .++  + ++++|+|.|.++..+++.++    +++++|++...+|++...+.+.+   |.++
T Consensus       100 ~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~----N~gd~vlie~~ty~~AL~s~~a~---gv~~  172 (472)
T KOG0634|consen  100 SGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLI----NRGDHVLIEEYTYPSALQSMEAL---GVKI  172 (472)
T ss_pred             cCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhh----cCCCceEEecccchHHHHhcccc---CceE
Confidence            345566666666655    222  1 49999999999999999999    99999999999999988887777   9888


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCC---------Cc-eEEEEeccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCC
Q 040741          174 TYLPVGADGIVNLDELRAAIRP---------DT-GLISVMAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKI  240 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~---------~t-~li~i~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~  240 (457)
                      +.|+.+.+| ++++.|++.++.         ++ .+.+|+..+||||..++++   +|.+||++|+.+|++|+.+.+-..
T Consensus       173 ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDdpYy~Lq~  251 (472)
T KOG0634|consen  173 IPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDDPYYFLQM  251 (472)
T ss_pred             EeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecCccceeec
Confidence            888887776 689999988752         23 4778999999999999864   699999999999999999864211


Q ss_pred             c--------------------------ccCCCCcccEEEeccccccCCC-CceEEEEecCCCccccccccCCcccccccc
Q 040741          241 P--------------------------VDVEKWNVSLMSLSGHKIYGPK-GVGALYMRRRPRIRVEPLINGGGQERGIRS  293 (457)
Q Consensus       241 ~--------------------------~~~~~~~~Di~~~s~~K~~g~~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~  293 (457)
                      .                          .+.+..|.-+-.-||+|+++|. .+||+.+.+..++++-...   +..   ..
T Consensus       252 ~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~l~ril~~a---e~~---t~  325 (472)
T KOG0634|consen  252 NTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLFLKRILDLA---EVA---TS  325 (472)
T ss_pred             cccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHHHHHHhhhc---cee---ec
Confidence            1                          1112223345677999988765 4999999886555543222   111   01


Q ss_pred             CCCChhHHHHHHHHHHHH-----HHhhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEEcc-------
Q 040741          294 GTLPTPLIVGFGSACEIA-----KKEMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSFAY-------  360 (457)
Q Consensus       294 ~t~~~~~~~al~~al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------  360 (457)
                       .|+.....-+.+.++..     ...+.+++..+...+.++..++.+.+|.- -.+.++..  +.++.+.++.       
T Consensus       326 -~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~a--GmFiwv~i~~~~~~~~~  402 (472)
T KOG0634|consen  326 -GPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKA--GMFIWVEIPYINFDTKK  402 (472)
T ss_pred             -CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCc--ceEEEEEeccccccccc
Confidence             12221122222223222     23467777788888889999998877765 22222322  3333344431       


Q ss_pred             -cc-chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          361 -VE-GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       361 -~~-~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                       .+ .++.+...   .||.+.+|..+..-             +... ..-++|++++.. +.|++++.++++..++++.-
T Consensus       403 ~i~q~~e~i~~~~vk~gV~~v~G~~F~v~-------------p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ike~f  468 (472)
T KOG0634|consen  403 SINQIEEIIFIKAVKNGVKLVCGSWFMVD-------------PESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIKEHF  468 (472)
T ss_pred             chHHHHHHHHHHHHHCCeEEecCceeEEc-------------CccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHHHHh
Confidence             11 11222221   69999999765421             0111 224999999875 47899999999999988753

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.79  E-value=3.3e-17  Score=168.88  Aligned_cols=324  Identities=16%  Similarity=0.108  Sum_probs=211.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCcEEEEEeCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEITYLPVG  179 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~~~  179 (457)
                      ....++++..|+.+|++. ..++++|+|.+|.+++.+++    .+||.||+++.+|.|+..+ +...   |+.++|++..
T Consensus       174 G~i~eAq~~AA~~fgAd~-tyFlvNGTS~gn~a~i~a~~----~~Gd~VLvdRN~HKSv~hgaLiLs---Ga~PVYl~P~  245 (720)
T PRK13578        174 GAAKDAQKHAAKVFNADK-TYFVLNGTSASNKVVTNALL----TPGDLVLFDRNNHKSNHHGALIQA---GATPVYLETA  245 (720)
T ss_pred             hHHHHHHHHHHHHhCCCc-eEEEeCChhHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHHc---CCeEEEeecc
Confidence            467889999999999864 48888889999999999999    8999999999999999986 5555   9999999865


Q ss_pred             CC-----CCCCHHH-----HHHhcCCC----------ceEEEEeccccccccccChHHHHHH-HHhcCCcEEEehhhhcC
Q 040741          180 AD-----GIVNLDE-----LRAAIRPD----------TGLISVMAVNNEIGVIQPMEEIGQI-CKEFKIPFHTDAAQALG  238 (457)
Q Consensus       180 ~~-----~~~d~~~-----le~~i~~~----------t~li~i~~~~~~~G~~~~l~~i~~l-~~~~~v~li~D~a~~~g  238 (457)
                      .+     |.++.++     ++++|...          .++++++++. ..|.++++++|+++ |+.++ +|++|+||+.-
T Consensus       246 ~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pT-YdG~~ydi~~I~~~~~h~~~-~llvDEAhgah  323 (720)
T PRK13578        246 RNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGT-YDGTIYNARQVVDKIGHLCD-YILFDSAWVGY  323 (720)
T ss_pred             ccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCC-CcceeecHHHHHHHhhccCC-cEEEeCcchhh
Confidence            32     3456444     88888644          4778888774 48999999999998 78888 99999999742


Q ss_pred             --CCcc------cCCCCccc----EEEecccc-ccCCCCceEEEEecCCCc---------cccccccCCccccccccCCC
Q 040741          239 --KIPV------DVEKWNVS----LMSLSGHK-IYGPKGVGALYMRRRPRI---------RVEPLINGGGQERGIRSGTL  296 (457)
Q Consensus       239 --~~~~------~~~~~~~D----i~~~s~~K-~~g~~G~G~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~t~  296 (457)
                        ..+.      ..-..++|    +++-|.|| +.+....+++-+++..++         ++...+.      -+.+.+|
T Consensus       324 ~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~------m~qSTSP  397 (720)
T PRK13578        324 EQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFM------LHASTSP  397 (720)
T ss_pred             hccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHH------HHcCCCh
Confidence              1121      11234778    99999999 455555677777654322         1211111      1235578


Q ss_pred             ChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH-hhcCCCeEEeCCCCCcc--------------cceEE-----
Q 040741          297 PTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGI-KEKLDGVVVNGSMERRY--------------IGNLN-----  355 (457)
Q Consensus       297 ~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~--------------~~~~~-----  355 (457)
                      +.+.++++..|...+.. .-+++.++..+.+..+++.| .. .+++.+..++.-..              .....     
T Consensus       398 sY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~-~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~~p~~  476 (720)
T PRK13578        398 FYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILAR-CKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSFEPGE  476 (720)
T ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHh-CCCeeecccccccccccccCchhhhcccccccccccCc
Confidence            88889988887777765 46788888888888899888 55 77887774321000              00000     


Q ss_pred             --EEEccccc-hHHHhcccCeEecccCccCCCCCC----h----hHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHH
Q 040741          356 --LSFAYVEG-ESLLMGLKEVAVSSGSACTSASLE----P----SYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       356 --~~~~~~~~-~~~~~~l~~i~~~~g~~~~~~~~~----~----~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~  423 (457)
                        ..|.+... .-.++-++=....+|..-..+.++    |    ...|+.-|+..+. +...|-|-++...+++++++++
T Consensus       477 ~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~Lv  556 (720)
T PRK13578        477 KWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKLQQLV  556 (720)
T ss_pred             cccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHH
Confidence              00110000 001111111111122210111111    1    1223333765554 3457777788888999999999


Q ss_pred             HHHHHHHHHHHhcChhHH
Q 040741          424 ELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       424 ~~l~~~~~~~~~~~~~~~  441 (457)
                      ++|.++-+......|+++
T Consensus       557 ~aL~~f~~~~~~~~~~~~  574 (720)
T PRK13578        557 AMLARFEKHIEDDAPLAE  574 (720)
T ss_pred             HHHHHHHHhhccccchhh
Confidence            999988665555556543

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=99.79  E-value=2.5e-16  Score=159.11  Aligned_cols=336  Identities=15%  Similarity=0.175  Sum_probs=198.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +.-.|++.+++.+.+...... .  .   .....+...++.+.|.++++... +.+.|++||
T Consensus        51 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~-~--~---~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sG  124 (451)
T PRK06918         51 VDGNQYIDFAGAIGTINVGHSHPKVKEALHKQVDQYIHT-G--F---NVMMYEPYIELAEKLAALAPGSFDKKVLFLNSG  124 (451)
T ss_pred             CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHHhccCc-c--c---cccccHHHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence            345568887443      357899999999998753211 0  0   00112566778888888886432 479999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHHh-----cC-----cEEEEEeCCC-----CCCCC------
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQQ-----EG-----FEITYLPVGA-----DGIVN------  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~-----~G-----~~v~~v~~~~-----~~~~d------  185 (457)
                      |+|++.|++....+.  .+.+||... ..|.....+......     .+     ..+..+|.+.     .+..+      
T Consensus       125 seA~e~AlklAr~~t--gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (451)
T PRK06918        125 AEAVENAVKIARKYT--KRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDF  202 (451)
T ss_pred             HHHHHHHHHHHHHHh--CCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHH
Confidence            999999999877542  344555544 455555554432210     00     1122333221     11100      


Q ss_pred             -HHHHHHhc----C-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCCCc--cc
Q 040741          186 -LDELRAAI----R-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEKWN--VS  250 (457)
Q Consensus       186 -~~~le~~i----~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~~~--~D  250 (457)
                       ++.+++.+    . ++...|+++.++...|.+.|    +++|.++|++||+++|.|+++. ++..  .+....++  +|
T Consensus       203 ~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pD  282 (451)
T PRK06918        203 MIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPD  282 (451)
T ss_pred             HHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCC
Confidence             22344333    2 45788889988877787665    8899999999999999999986 3321  12222233  78


Q ss_pred             EEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       251 i~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      ++  +++|.++ .-.+|+++++++..+.+.+...+.      . ...++..+++..++++.+.+  ....++.+++.+++
T Consensus       283 i~--t~sK~l~~G~pig~v~~~~~i~~~~~~~~~~~------T-~~g~~l~~aaa~a~l~~i~~--~~~~~~~~~~g~~l  351 (451)
T PRK06918        283 LI--TVSKSLGAGVPISGVIGRKEIMDESAPGELGG------T-YAGSPLGCAAALAVLDIIEK--ENLNDRAIELGKVV  351 (451)
T ss_pred             EE--eeehhhcCCCccEEEEEcHHHHhccCCCCcCc------C-CCcCHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHH
Confidence            66  5569544 234899999887666554322211      1 24455666666677777755  23344455555555


Q ss_pred             HHHHhhc---CCCeEEeCCCCCcccceEEEEEc-c----ccc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHc
Q 040741          330 LNGIKEK---LDGVVVNGSMERRYIGNLNLSFA-Y----VEG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL  395 (457)
Q Consensus       330 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~-~----~~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~  395 (457)
                      .+.|++.   ++.+.-+.    ..+.+..+.+. .    ...    ..+...+  +||.+.++..+              
T Consensus       352 ~~~l~~l~~~~~~~~~vr----g~G~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Gvlv~~~~~~--------------  413 (451)
T PRK06918        352 MNRFEEMKNKYNCIGDVR----GLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTY--------------  413 (451)
T ss_pred             HHHHHHHHhhCCCceeec----cceeEEEEEEccCCCcCCCcHHHHHHHHHHHHHCCeEEeecCCC--------------
Confidence            5555441   22211111    11343333342 1    111    2233333  58877654211              


Q ss_pred             CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          396 GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       396 g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                             .+.+||+++..+++++||+++++|+++++++.
T Consensus       414 -------~~~lrl~p~l~~t~~~id~~l~~l~~~l~~~~  445 (451)
T PRK06918        414 -------GNVIRVLMPLVITDEQLEEGLTIIEESLQACY  445 (451)
T ss_pred             -------CCEEEEECCCccCHHHHHHHHHHHHHHHHHHH
Confidence                   16899999988899999999999999998763

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=99.79  E-value=1.6e-16  Score=159.69  Aligned_cols=335  Identities=12%  Similarity=0.101  Sum_probs=197.0

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.+.. +...  ..  .. .+...++.+.+.+..+.+. +.++|+++|
T Consensus        38 ~dG~~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~~-~~~~--~~--~~-~~~~~~la~~l~~~~~~~~~~~~~f~~sG  111 (425)
T PRK08088         38 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCF--QV--LA-YEPYLELCEKMNQKVPGDFAKKTLLVTTG  111 (425)
T ss_pred             CCCCEEEEcCCchhhcCCCCCCHHHHHHHHHHHhhCC-Cccc--cc--cC-CHHHHHHHHHHHHhCCCCCCCEEEEeCCc
Confidence            344557887553      3458999999999987531 1111  00  01 1234477777888776543 469999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh-----cCc-----EEEE--EeCCCCCC-C--CHHHHHHh
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ-----EGF-----EITY--LPVGADGI-V--NLDELRAA  192 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~-----~G~-----~v~~--v~~~~~~~-~--d~~~le~~  192 (457)
                      ++|++.+++....+ .++++.|.+....|.....+......     .|.     .+..  ++.+.++. .  ++++++++
T Consensus       112 sea~e~Alklar~~-~~r~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~  190 (425)
T PRK08088        112 SEAVENAVKIARAA-TKRSGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERI  190 (425)
T ss_pred             HHHHHHHHHHHHHH-hCCCeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHH
Confidence            99999999986653 24445555555556555544332110     011     0111  22222210 0  15568887


Q ss_pred             cC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCCc--ccC--CCCcccEEEecccc
Q 040741          193 IR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKIP--VDV--EKWNVSLMSLSGHK  258 (457)
Q Consensus       193 i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~~--~~~--~~~~~Di~~~s~~K  258 (457)
                      ++     ++.+.|+++.+....|.+.+    +++|.++|++||+++|+|++++. +...  ...  ....+|  +.|++|
T Consensus       191 l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pd--i~s~sK  268 (425)
T PRK08088        191 FKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAAD--LTTFAK  268 (425)
T ss_pred             HHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCC--EEEEec
Confidence            75     45678888888887787766    89999999999999999999873 2211  111  122345  456679


Q ss_pred             ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----
Q 040741          259 IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI----  333 (457)
Q Consensus       259 ~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l----  333 (457)
                      .+++ -.+|+++++++..+.+.....+      . ....++..++++...++....  ++..++.++..+++++.|    
T Consensus       269 ~l~~G~rig~v~~~~~~~~~~~~~~~~------~-t~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~l~  339 (425)
T PRK08088        269 SIAGGFPLAGVTGRAEVMDAIAPGGLG------G-TYAGNPIACAAALAVLKVFEQ--ENLLQKANALGEKLKDGLLAIA  339 (425)
T ss_pred             cccCCCcceeeEecHHHHhhcCCCCCC------C-CCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHH
Confidence            6553 2489999988766665433211      1 123455666666667766543  233334444444444433    


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEcc-cc--------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAY-VE--------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      .+ .|.+..+..    .+.++.+.+.. .+        ...+...+  +|+.+.++..+                     
T Consensus       340 ~~-~~~~~~v~g----~G~~~~l~l~~~~~~~~p~~~~~~~l~~~~~~~Gv~~~~~~~~---------------------  393 (425)
T PRK08088        340 EK-HPEIGDVRG----LGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPY---------------------  393 (425)
T ss_pred             Hh-CCCeEEEec----cceEEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCEEecCCCC---------------------
Confidence            33 444322211    14445555521 11        23344333  56665432110                     


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+.|||+++..++++||++.+++|+++++.+
T Consensus       394 ~~~iRl~~~~~~t~~ei~~~i~~l~~~l~~~  424 (425)
T PRK08088        394 YNVLRILVPLTIEDAQIRQGLEIIAQCFDEA  424 (425)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHHHHHHhh
Confidence            2789999998899999999999999998754

>PRK07036 hypothetical protein; Provisional

Probab=99.78  E-value=2.5e-16  Score=159.04  Aligned_cols=342  Identities=15%  Similarity=0.159  Sum_probs=205.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.... ..+      ++....+...++.++|.+++....+.+.|++||
T Consensus        48 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~------~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sG  121 (466)
T PRK07036         48 ADGRRYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTP------FGDMTNAPAAELAAKLAELAPGDLNHVFLTTGG  121 (466)
T ss_pred             CCCCEEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccc------ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCc
Confidence            345568887544      3678999999999887531 111      010112456677788888775444569999999


Q ss_pred             HHHHHHHHHHhhhhhcC----CCCEEEEcCC-CCcchHHHHHHHHhc----C-----cEEEEEeCCC-----CCC-----
Q 040741          128 TESNNVSIKGVMHFYKD----KKRHVITTQT-EHKCVLDSCRHLQQE----G-----FEITYLPVGA-----DGI-----  183 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~----~g~~vi~~~~-~h~~~~~~~~~~~~~----G-----~~v~~v~~~~-----~~~-----  183 (457)
                      |+|++.|++....+...    .+.+|+.... .|.....+.......    +     ..+..++.+.     .+.     
T Consensus       122 seAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  201 (466)
T PRK07036        122 STAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAF  201 (466)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHH
Confidence            99999999987654321    1356665554 555554443322111    1     1133333221     010     


Q ss_pred             --CCHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC---CC
Q 040741          184 --VNLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE---KW  247 (457)
Q Consensus       184 --~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~---~~  247 (457)
                        ..++.+++.+.    ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++. +|..  .+...   ..
T Consensus       202 ~~~~~~~~~~~i~~~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv  281 (466)
T PRK07036        202 CDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGI  281 (466)
T ss_pred             HHHHHHHHHHHHHHcCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCC
Confidence              01244555552    45789999999888898887    9999999999999999999985 5432  12222   23


Q ss_pred             cccEEEecccccc-CC-CCceEEEEecCCCcccccc-ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          248 NVSLMSLSGHKIY-GP-KGVGALYMRRRPRIRVEPL-INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       248 ~~Di~~~s~~K~~-g~-~G~G~l~~~~~~~~~~~~~-~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      .+|+++++  |.+ |. ..+|+++++++..+.+.+. ..+.....+... ..++..+++..+.++.+++  +...++.++
T Consensus       282 ~PDivt~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~~~~T~-~gnpl~~aaa~a~Le~i~~--~~l~~~~~~  356 (466)
T PRK07036        282 QPDIITFA--KGLTSGYQPLGAVIISERLLDVISGPNAKGNVFTHGFTY-SGHPVACAAALKNIEIMER--EGLCEHVRE  356 (466)
T ss_pred             CCCEEEEc--cccccCccccEEEEEcHHHHHHHhcccCcCcccccCCCC-CCCHHHHHHHHHHHHHHHh--CCHHHHHHH
Confidence            57988776  943 32 2489999987765544321 001000011111 3466677777788888765  456777777


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--------c----hHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--------G----ESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      +.+++++.|++ +....++++ ....+.++.+.|....        .    ..+...+  +|+.+.+.            
T Consensus       357 ~g~~l~~~L~~-l~~~~~v~~-vrG~Gl~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~------------  422 (466)
T PRK07036        357 VGPYFEERLAS-LRELPLVGD-VRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPL------------  422 (466)
T ss_pred             HHHHHHHHHHH-hccCCCEEE-EEeeceEEEEEEccCccccCCCCchhHHHHHHHHHHHHCCcEEeec------------
Confidence            77888777765 322111111 1122444455552111        0    1122222  45554321            


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                  .+.+||+++..+|++|||++++++.++++++
T Consensus       423 ------------~~~~~l~Ppl~it~~~id~~~~~l~~al~~~  453 (466)
T PRK07036        423 ------------EHLCVLSPPLIITRAQIDEIVAILRAAIEET  453 (466)
T ss_pred             ------------CCEEEEeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence                        1578999999999999999999999999877

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=4.9e-17  Score=145.81  Aligned_cols=352  Identities=14%  Similarity=0.131  Sum_probs=214.1

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC----CccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS----RTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~----~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~  129 (457)
                      ++.|.|.- ++...-|++.+.+.+...+......-    ..|....+....+..+...+.+-.|.  ++.++.+|+|+..
T Consensus        30 ~g~imLgg-GNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs  108 (417)
T COG3977          30 PGAIMLGG-GNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQS  108 (417)
T ss_pred             CCceeeCC-CCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccc
Confidence            44566654 34444466777776665443211000    00111112235666677777777775  5778999999999


Q ss_pred             HHHHHHHHhhhhhcCC--CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----CC----CCCCHHHHHHhcCCCceE
Q 040741          130 SNNVSIKGVMHFYKDK--KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG----AD----GIVNLDELRAAIRPDTGL  199 (457)
Q Consensus       130 a~~~al~~~~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----~~----~~~d~~~le~~i~~~t~l  199 (457)
                      +..-++..+...+...  +..++--.++|.++.+++..    +--.+-.+.+    +.    .++|.+.|+  +.+++.+
T Consensus       109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~l~----~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~e~~g~  182 (417)
T COG3977         109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAGLE----EDLFVSAKPNIELLPAGQFKYHVDFEHLH--IGESTGA  182 (417)
T ss_pred             hHHHHHHHhcCccCCCcceeEeeccChhhccccccccC----ccceeeccCCcccccccceeeccCHHHcc--cccccce
Confidence            9988888776433211  22344456778777665321    1111111111    12    378888886  6789999


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC----c-ccEEEeccccccCC-CCceEEEE
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW----N-VSLMSLSGHKIYGP-KGVGALYM  270 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~----~-~Di~~~s~~K~~g~-~G~G~l~~  270 (457)
                      ||++.+.||||.+.-   +.+|.+++++||+++++|.|++.+...+.+.+.    + .-++|+|++|..=| ..||+++.
T Consensus       183 ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~GLPG~R~GIiIa  262 (417)
T COG3977         183 ICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKLGLPGSRCGIIIA  262 (417)
T ss_pred             EEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCCceecccccccCCCCEEEEeehhhcCCCCcceeEEEc
Confidence            999999999999865   667888899999999999999987655444332    2 34789999995322 23999999


Q ss_pred             ecCCCccccccccCCccccccccCCCChhHHHHHHHH---HHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          271 RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA---CEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~a---l~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +++.+..+......-.    ..++...+..+.-+...   +.+.++- .+-.+++.+..-..+++.+.+ .+ ..+.. +
T Consensus       263 ne~viqaitnmn~iis----Lap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~-~~-~~iHk-p  335 (417)
T COG3977         263 NEKVIQAITNMNGIIS----LAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPE-YR-CLIHK-P  335 (417)
T ss_pred             cHHHHHHHHhccceee----ecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCc-cc-eeeec-C
Confidence            9887666543321111    11112221111111111   1111111 234444555555566666665 33 33333 3


Q ss_pred             CCcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC--CCCeEEEecCCCCCHHHHH
Q 040741          347 ERRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM--AHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       347 ~~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~--~~~~iRi~~~~~~t~edid  420 (457)
                      +.  ..++.++|..  ++.+.+.+.|  +|+.+.+|..+.++            .+.++  .|.++|+++..  +.+.|+
T Consensus       336 EG--AIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpG------------l~~ewpH~hqC~Rmn~~~--~~~~ie  399 (417)
T COG3977         336 EG--AIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPG------------LDKEWPHTHQCMRMNYVP--EPEKIE  399 (417)
T ss_pred             Cc--ceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCC------------CCCCCCCccceEEEecCC--CHHHHH
Confidence            32  3444455543  5778999988  69999999988763            33333  56799999876  679999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 040741          421 RAIELTVKQVEKLREMS  437 (457)
Q Consensus       421 ~~~~~l~~~~~~~~~~~  437 (457)
                      ..+.+|.+.+++.-+..
T Consensus       400 ~Gva~lae~ve~~yq~~  416 (417)
T COG3977         400 KGVAILAEEVERAYQEV  416 (417)
T ss_pred             HHHHHHHHHHHHHHhcc
Confidence            99999999998876544

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.78  E-value=1e-16  Score=145.49  Aligned_cols=328  Identities=17%  Similarity=0.198  Sum_probs=217.9

Q ss_pred             ccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 040741           53 RIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWE-SEVAVETARSQIADLIGASPKEIIFTS  125 (457)
Q Consensus        53 ~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~~i~~t~  125 (457)
                      +...+.-|||+-+.      +-+.|.+++++.+......        ..++. ..+...++++.+.+++|.+.  ++-++
T Consensus        54 wD~eGk~ylDflsaysaVnqGhchpki~~aLqeq~~kLt--------lssrafYnd~~~~f~~~vt~lf~~~k--vlpmn  123 (427)
T KOG1402|consen   54 WDPEGKEYLDFLSAYSAVNQGHCHPKIIKALQEQADKLT--------LSSRAFYNDVLGEFAEYVTKLFGYDK--VLPMN  123 (427)
T ss_pred             ECCCccchhhhhhhhhhcccCCCCHHHHHHHHHHHhHhh--------hhhHHHhhhhHHHHHHHHHHhcCcce--eeecc
Confidence            44566778887653      3689999999999887542        11111 23688899999999999876  88899


Q ss_pred             ChHHHHHHHHHHhhhh-hcC---C--CCEEEEcCCCCcchHHHHHHH-------HhcC----cEEEEEeCCCCCCCCHHH
Q 040741          126 GATESNNVSIKGVMHF-YKD---K--KRHVITTQTEHKCVLDSCRHL-------QQEG----FEITYLPVGADGIVNLDE  188 (457)
Q Consensus       126 g~T~a~~~al~~~~~~-~~~---~--g~~vi~~~~~h~~~~~~~~~~-------~~~G----~~v~~v~~~~~~~~d~~~  188 (457)
                      .|.||.+.+++..+.+ +..   |  .-.|+....+|.+...++-.+       ...|    ..+.++|-+     |.++
T Consensus       124 TGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~-----d~ea  198 (427)
T KOG1402|consen  124 TGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYG-----DAEA  198 (427)
T ss_pred             cchhHHHHHHHHHHHHHHhhccCCccceeEEEecccccCceeeeEEecCCcchhhccCCCCCCcceeeccC-----CHHH
Confidence            9999999999987732 322   2  123444444433322221111       0001    013333333     8899


Q ss_pred             HHHhcC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcC----CC-cccCCCCcccEEEecccc
Q 040741          189 LRAAIR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALG----KI-PVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       189 le~~i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g----~~-~~~~~~~~~Di~~~s~~K  258 (457)
                      |+.+++ ++.+.++++.++.+.|++.|    ++++.++|++||+++|.|++|..-    .+ ..+.....+|++.+.  |
T Consensus       199 le~~l~~~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl~RTGk~la~d~env~PDivilg--K  276 (427)
T KOG1402|consen  199 LEVALKSPNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILG--K  276 (427)
T ss_pred             HHHHhcCCCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEe--c
Confidence            999986 46788999999999999988    899999999999999999999742    22 334445568999988  8


Q ss_pred             c--cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          259 I--YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       259 ~--~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      .  .|...+.+++.+++....+.|.-+|.      .+| .|+..+....++++.+.+  +++.++...+...+++.|.+ 
T Consensus       277 alSGG~~Pvsavl~~~~im~~~~pgeHgs------Tyg-gNpLg~~vaiAalevi~e--ekL~era~~lG~~l~~~L~~-  346 (427)
T KOG1402|consen  277 ALSGGVYPVSAVLADDDIMLNIKPGEHGS------TYG-GNPLGCAVAIAALEVIVE--EKLVERAAKLGEILRDQLNK-  346 (427)
T ss_pred             cccCCeeeeEEEEecHHHHhccCCCcccc------ccC-CChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh-
Confidence            3  34445788888877666666655442      333 344555556679999888  78888889999999998877 


Q ss_pred             CCCeE--EeCCCCCcccceEEEEEc-----cccchHHHhccc--CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          337 LDGVV--VNGSMERRYIGNLNLSFA-----YVEGESLLMGLK--EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       337 ~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      ++--.  ++. .....+....+.|.     +.+.++++-.++  |+...+                       ...+.||
T Consensus       347 l~~~~p~~v~-~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkp-----------------------tH~~IiR  402 (427)
T KOG1402|consen  347 LQKKFPHVVK-EVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKP-----------------------THGNIIR  402 (427)
T ss_pred             ccccccchhh-eeeccceEEEEEeccccccchhHHHHHHcccccccccCC-----------------------CCCCeEE
Confidence            43210  011 11112333333332     234556666663  433321                       1237999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      |.+...++++|+++.++++.+.+.
T Consensus       403 faPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  403 FAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             ecCCcccCHHHHHHHHHHHHHHhc
Confidence            999999999999999999998764

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.78  E-value=8.7e-20  Score=171.82  Aligned_cols=247  Identities=21%  Similarity=0.301  Sum_probs=168.7

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      ..|+++++|.+.....        .  +|..++...++++.+++++|.+.  .+|+++||.|+.+++++++    .+++.
T Consensus         7 ~~~~m~~a~~~a~~gd--------~--~Yg~D~~~~~l~~~i~~l~g~e~--a~f~~sGT~An~~al~~~~----~~~~~   70 (290)
T PF01212_consen    7 PTPAMLEAMAAANVGD--------D--AYGEDPTTARLEERIAELFGKEA--ALFVPSGTMANQLALRAHL----RPGES   70 (290)
T ss_dssp             S-HHEEHHHHHTTSB---------C--CTTSSHHHHHHHHHHHHHHTSSE--EEEESSHHHHHHHHHHHHH----HTTEE
T ss_pred             CCHHHHHHHHccccCC--------c--ccCCChhHHHHHHHHHHHcCCCE--EEEeCCCChHHHHHHHHHH----hcCCc
Confidence            7788999995554321        1  24445799999999999999875  7899999999999999999    79999


Q ss_pred             EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEecccccc-ccccC---hHHH
Q 040741          149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEI-GVIQP---MEEI  218 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~-G~~~~---l~~i  218 (457)
                      ||+....|....+..-.....|.++..++.+.+|.+|+++|++++.+      ++++|+++.+++.. |.+++   +++|
T Consensus        71 vi~~~~aHi~~~E~ga~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai  150 (290)
T PF01212_consen   71 VICADTAHIHFDETGAIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAI  150 (290)
T ss_dssp             EEEETTEHHHHSSTTHHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHH
T ss_pred             eeccccceeeeeccchhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHH
Confidence            99999988877776444455799999999876699999999999864      57899999998863 77877   5668


Q ss_pred             HHHHHhcCCcEEEehhhhcC------CCcccCCCCcccEEEeccccccCCCCceEEEEecCCCcccccc--ccCCccccc
Q 040741          219 GQICKEFKIPFHTDAAQALG------KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPL--INGGGQERG  290 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g------~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~--~~~~~~~~~  290 (457)
                      .++||+||+++|+|+|.-+-      ..+.++. .++|++++|++|.+|.++.++++++++.+++....  ..|++.   
T Consensus       151 ~~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~gg~~---  226 (290)
T PF01212_consen  151 SELAREHGLPLHMDGARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRLGGGM---  226 (290)
T ss_dssp             HHHHHHHT-EEEEEETTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHHTHHH---
T ss_pred             HHHHHhCceEEEEehhhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHhccCe---
Confidence            88899999999999997432      1111222 36899999999977655558888887644432222  122211   


Q ss_pred             cccCCCChhHHHHH--HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          291 IRSGTLPTPLIVGF--GSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       291 ~~~~t~~~~~~~al--~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                       +.  ..+.....+  ..++ ...+.......+..++++++.+.|+. +++.
T Consensus       227 -~~--~G~~~a~~~~~~~~l-~~l~~~~~~~~~~~~~A~~La~~l~~-~~~~  273 (290)
T PF01212_consen  227 -RQ--AGVLAAAELYQFAAL-RALELWLERARHANAMAKRLAAGLEA-LGGV  273 (290)
T ss_dssp             -HH--TTHHHHHHHHHHHHH-CHEECSHHHHHCHHHHHHCHHHCHHE-ECEE
T ss_pred             -ee--cceeeeechhhHHHH-HHHHhhHHHHHHHHHHHHHHHHHHHH-CCCc
Confidence             00  001111000  0111 11122356667788889999999988 5444

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=99.78  E-value=4.3e-16  Score=156.79  Aligned_cols=337  Identities=13%  Similarity=0.116  Sum_probs=199.1

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCc-EEEeC
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKE-IIFTS  125 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~-i~~t~  125 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....-     .+... ...+...++.++|.++++..  ... +++++
T Consensus        36 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~-----~~~~~-~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~  109 (442)
T TIGR00709        36 VEGKEYLDFLAGAGTLALGHNHPNMKQKILDYLQSGLP-----LHTLD-LTTPLKDAFIEALLNIIPKRKMDYKLQFPGP  109 (442)
T ss_pred             CCCCEEEEccccHhhhcCCCCCHHHHHHHHHHHHhccC-----ccccc-cCcHHHHHHHHHHHHhCCCcCCCccEEEeCC
Confidence            344568887543      36789999999999875210     00101 11256667888888887532  123 45568


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHH----hcCc-----EEEEEeCCCCCCC--------CH-
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQ----QEGF-----EITYLPVGADGIV--------NL-  186 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~----~~G~-----~v~~v~~~~~~~~--------d~-  186 (457)
                      ||++|++.|++....+  ..+.+|+.... .|.....+.....    ..+.     .+.+++.+.....        +. 
T Consensus       110 sGsEA~e~AlklAr~~--tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (442)
T TIGR00709       110 SGADAVEAAIKLAKTY--TGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSN  187 (442)
T ss_pred             CHHHHHHHHHHHHHHh--cCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence            9999999999987754  23455665554 5555544443321    1111     1233332211111        11 


Q ss_pred             ---HHHHHhcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccC--CCCc
Q 040741          187 ---DELRAAIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDV--EKWN  248 (457)
Q Consensus       187 ---~~le~~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~--~~~~  248 (457)
                         +.+++.++      ++...|+++.+.+..|.+.|    +++|.++|++||+++|.|+++. +|..  .+..  ....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~  267 (442)
T TIGR00709       188 ASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIE  267 (442)
T ss_pred             HHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCC
Confidence               22344442      45778888888888887754    8999999999999999999986 4321  1111  1234


Q ss_pred             ccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       249 ~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      +|+++++  |.+ |...+|+++++++ .+.+.+...+      . ....++..+++..++++.+++  +...++.+++.+
T Consensus       268 PDiv~~g--K~l~~G~Pigav~~~~~-~~~~~~~~~~------~-T~~gnpla~aaa~a~L~~i~~--~~l~~~~~~~g~  335 (442)
T TIGR00709       268 PDFVVMS--KAVGGGLPLAVLLIAPE-FDAWQPAGHT------G-TFRGNQLAMVTGTEALNYWKD--DNLAQNAQERGE  335 (442)
T ss_pred             CcEEEEc--ccccCCcccEEEEEchH-HhccCCCcCC------C-CCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHH
Confidence            7988865  943 3234899999876 3333221111      1 124566667777778887765  355667777777


Q ss_pred             HHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc---------------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE---------------GESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      ++.+.|++......++++ ....+.++.+.+....               ...+...+  +|+.+.+..           
T Consensus       336 ~l~~~L~~l~~~~~~v~~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-----------  403 (442)
T TIGR00709       336 RITSFLDDMIKEHPCIGN-VRGRGLMQGIMIVDERQSKDATGAYPRDCELAAAIQGACFENGLLLETGG-----------  403 (442)
T ss_pred             HHHHHHHHHHHhCCCeee-eeccceEEEEEEccCcccccccccCCcchHHHHHHHHHHHHCCeEEeecC-----------
Confidence            777776651111111221 1223455555553210               11222222  466654311           


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                ...+.|||.++..+|++|||+++++++++++++
T Consensus       404 ----------~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~~~  436 (442)
T TIGR00709       404 ----------REGEVFRLLCPITIDQEECEEGISRFKQAVEEA  436 (442)
T ss_pred             ----------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence                      112789999999999999999999999999875

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK07483 hypothetical protein; Provisional

Probab=99.78  E-value=4.8e-16  Score=156.12  Aligned_cols=348  Identities=15%  Similarity=0.149  Sum_probs=207.4

Q ss_pred             cCCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           54 IAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        54 ~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ...+.-|+|+.+.      +..+|++.+++.+.+.... .++.       ....+...++.++|++++....+.++|++|
T Consensus        26 D~dG~~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~~~~~~-------~~~~~~~~~lae~L~~~~p~~~~~v~f~~s   98 (443)
T PRK07483         26 DATGKRYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLAYAHTS-------FFTTEPAEALADRLVAAAPAGLEHVYFVSG   98 (443)
T ss_pred             eCCCCEEEEcCccHhhhccCCCCHHHHHHHHHHHHhccCcccc-------ccCCHHHHHHHHHHHHhCCCCCCEEEEcCC
Confidence            3455678887653      3678999999999987542 1111       011245667888888887543457999999


Q ss_pred             hHHHHHHHHHHhhhhhc----CCCCEEEE-cCCCCcchHHHHHHHHhc----C-----cEEEEEeCCCCCC-C-------
Q 040741          127 ATESNNVSIKGVMHFYK----DKKRHVIT-TQTEHKCVLDSCRHLQQE----G-----FEITYLPVGADGI-V-------  184 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~----~~g~~vi~-~~~~h~~~~~~~~~~~~~----G-----~~v~~v~~~~~~~-~-------  184 (457)
                      ||+|++.|++....++.    ..+.+||. ....|.....+.......    .     ..+..++...... .       
T Consensus        99 GsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  178 (443)
T PRK07483         99 GSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDE  178 (443)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHH
Confidence            99999999998775531    12345665 445566655544322100    0     1122232211000 0       


Q ss_pred             -----CHHHHHHhcC----CCceEEEEecccc-ccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CC
Q 040741          185 -----NLDELRAAIR----PDTGLISVMAVNN-EIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VE  245 (457)
Q Consensus       185 -----d~~~le~~i~----~~t~li~i~~~~~-~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~  245 (457)
                           .++++++++.    ++...|+++.+.. ..|.+.|    +++|.++|++||+++|+|+++. +|...  +.  ..
T Consensus       179 ~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~  258 (443)
T PRK07483        179 AYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEED  258 (443)
T ss_pred             HHHHHHHHHHHHHHHhcCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhc
Confidence                 1356676553    4678899999876 3577765    8999999999999999999986 43221  11  11


Q ss_pred             CCcccEEEecccc-ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          246 KWNVSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       246 ~~~~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      ...+|+++++  | +.|. ..+|+++++++..+.+.+.. + ....+.. ...++..+++..+.++.+++  +...++.+
T Consensus       259 gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~~~~~~~~-~-~~~h~~T-~~gnpl~~aaa~a~l~~i~~--~~l~~~~~  331 (443)
T PRK07483        259 GVAPDLVTIA--KGLGAGYQPIGAVLASDRIYDAIADGS-G-FFQHGHT-YLGHATACAAALAVQRVIAE--DGLLANVR  331 (443)
T ss_pred             CCCCCeeeeh--hhhccCccccEEEEEcHHHHHHHhcCC-C-ccccCCC-CCCCHHHHHHHHHHHHHHHh--cCHHHHHH
Confidence            2358999887  9 4433 24899999877554443210 0 0000011 13466677777788888776  45666677


Q ss_pred             HHHHHHHHHHhhc---CCCeEEeCCCCCcccceEEEEEccc-------c-----chHHHhcc--cCeEecccCccCCCCC
Q 040741          324 ALHDRLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYV-------E-----GESLLMGL--KEVAVSSGSACTSASL  386 (457)
Q Consensus       324 ~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~l--~~i~~~~g~~~~~~~~  386 (457)
                      ++.+++++.|++.   ++.+   ++ ....+.++.+.+...       +     ...+...+  +|+.+.+...+..   
T Consensus       332 ~~g~~l~~~L~~l~~~~~~i---~~-vRG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~---  404 (443)
T PRK07483        332 ARGEQLRARLRERLGQHPHV---GD-IRGRGLFVGVELVADRATKAPFDPALKLHARIKREAMARGLMVYPMGGTID---  404 (443)
T ss_pred             HHHHHHHHHHHHHHhcCCCe---ee-EeecccEEEEEEeecccccCCCCchhhHHHHHHHHHHHCCcEEEecCcccc---
Confidence            7777777766541   3322   11 112244444544211       0     01233333  5776643211100   


Q ss_pred             ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       387 ~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                   ...++.|||.++..++++|||+++++|+++++++..
T Consensus       405 -------------~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~~~~~  440 (443)
T PRK07483        405 -------------GVRGDHVLLAPPFIITAAQIDEIVERLGDAIDAALA  440 (443)
T ss_pred             -------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence                         011268999999999999999999999999987653

>PRK07481 hypothetical protein; Provisional

Probab=99.78  E-value=3.1e-16  Score=157.89  Aligned_cols=343  Identities=15%  Similarity=0.112  Sum_probs=202.6

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +...|++.+|+.+.+....-...    ..+. ..+...++.++|.++++- +.+.++|++||
T Consensus        39 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~----~~~~-~~~~~~~lae~L~~~~~~~~~~~v~f~~sG  113 (449)
T PRK07481         39 IDGKKLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYST----FDGT-THPRAIELSYELIDMFAPEGMRRVFFSSGG  113 (449)
T ss_pred             CCCCEEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceec----cccc-CCHHHHHHHHHHHHhcCCCCCCEEEEcCch
Confidence            345568887542      25789999999999875321100    0011 124566788888888742 23469999999


Q ss_pred             HHHHHHHHHHhhhhhc---C-CCCEEEEcCC-CCcchHHHHHHHHhcC---------cEEEEEeCCCC-----CCCCHHH
Q 040741          128 TESNNVSIKGVMHFYK---D-KKRHVITTQT-EHKCVLDSCRHLQQEG---------FEITYLPVGAD-----GIVNLDE  188 (457)
Q Consensus       128 T~a~~~al~~~~~~~~---~-~g~~vi~~~~-~h~~~~~~~~~~~~~G---------~~v~~v~~~~~-----~~~d~~~  188 (457)
                      |+|++.|++....+..   + .+.+|+.... .|.....+........         ..+..++.+..     +.-|+++
T Consensus       114 sEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~  193 (449)
T PRK07481        114 SDSVETALKLARQYWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEE  193 (449)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHH
Confidence            9999999998776542   1 2355665554 4554544432211100         11222322210     0013333


Q ss_pred             --------HHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCC
Q 040741          189 --------LRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKW  247 (457)
Q Consensus       189 --------le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~  247 (457)
                              +|++|.    ++...|+++.++...|.+.|    ++++.++|++||+++|.|+++. +|...    ......
T Consensus       194 ~~~~~~~~le~~i~~~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv  273 (449)
T PRK07481        194 LARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGV  273 (449)
T ss_pred             HHHHHHHHHHHHHHhcCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCC
Confidence                    344442    46789999999888888766    8999999999999999999986 43221    111223


Q ss_pred             cccEEEeccccc-cCC-CCceEEEEecCCCcccccccc-CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          248 NVSLMSLSGHKI-YGP-KGVGALYMRRRPRIRVEPLIN-GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       248 ~~Di~~~s~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~-~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      .+|+++++  |. .|. ..+|+++++++..+.+.+... .+....+.. ...++..+++..++++.+++  +...++.++
T Consensus       274 ~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~~~~~~~~~~~~~~~h~~T-~~gnpl~~aaa~a~L~~l~~--~~l~~~~~~  348 (449)
T PRK07481        274 KPDIMCLA--KGITSGYVPLGATMVNARIADAFEANADFGGAIMHGYT-YSGHPVACAAALATLDIVVR--EDLPANAAK  348 (449)
T ss_pred             CCCEEEEe--ecccCCCcCceEEEEcHHHHHHHhccCccccccccCCC-CCCCHHHHHHHHHHHHHHHh--hhHHHHHHH
Confidence            58998887  94 332 248999998765544432110 000000011 13456667777778887765  456667777


Q ss_pred             HHHHHHHHHhhcCC-CeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChh
Q 040741          325 LHDRLLNGIKEKLD-GVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       325 ~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      +.+++.+.|++ +. ...++++ ....+.++.+.+....            ...+...+  +|+.+.+.           
T Consensus       349 ~g~~l~~~L~~-l~~~~~~i~~-vrG~Glm~gi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~-----------  415 (449)
T PRK07481        349 RGAYLLEGLQP-LKERFELVGD-VRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPS-----------  415 (449)
T ss_pred             HHHHHHHHHHH-HhhcCCCeEE-EeecceEEEEEecccccccCCCCchhHHHHHHHHHHHhCCeEEEec-----------
Confidence            77777777766 21 1111111 1122444445552110            01222222  56665431           


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                   .+.+||++...+|++|||+++++++++++++
T Consensus       416 -------------g~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  446 (449)
T PRK07481        416 -------------GTKIILSPPLVIQREDVDRIVDALDAGLSAV  446 (449)
T ss_pred             -------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence                         1468999999999999999999999999765

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.77  E-value=2.7e-16  Score=157.69  Aligned_cols=323  Identities=15%  Similarity=0.173  Sum_probs=197.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+.....  .      +.. .+...++.++|.+.+. ..+.+.|+++||
T Consensus        50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~------~~~-~~~~~~la~~l~~~~p-~~~~v~f~~sGs  119 (428)
T PRK12389         50 VDGNKYIDYLAAYGPIITGHAHPHITKAITEAAENGVL--Y------GTP-TELEIEFAKMLKEAIP-SLEKVRFVNSGT  119 (428)
T ss_pred             CCCCEEEEccccccccccCCCCHHHHHHHHHHHHhCCc--c------CCC-CHHHHHHHHHHHHhCC-CCcEEEEeCCHH
Confidence            345568886433      25679999999999875321  0      111 1455677778877775 245799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHh----------cCc------EEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQ----------EGF------EITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~----------~G~------~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++.|++....+  ..+.+|+.... .|.....+......          .|+      ++..++.     .|++.+++
T Consensus       120 eA~e~AlklAr~~--tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~  192 (428)
T PRK12389        120 EAVMTTIRVARAY--TGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-----NDIEALKE  192 (428)
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC-----CCHHHHHH
Confidence            9999999987754  33456665554 45544443332210          011      1111221     27889988


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCccc----CCCCcccEEEecccc-c
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIPVD----VEKWNVSLMSLSGHK-I  259 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~~~----~~~~~~Di~~~s~~K-~  259 (457)
                      .+.   ++...|+++.+.+..|.+.|    +++|.++|++||+++|+|++++.......    .....+|+++++  | +
T Consensus       193 ~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv~PDivt~g--K~l  270 (428)
T PRK12389        193 ALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGVEPDLTALG--KII  270 (428)
T ss_pred             HHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCCCCCeeeec--hhh
Confidence            885   45788999999998999888    99999999999999999999874322111    112257887665  9 4


Q ss_pred             cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741          260 YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---  336 (457)
Q Consensus       260 ~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---  336 (457)
                      .|.-.+|+++++++..+.+.+.  +... . ......++..+++..++++.+++  +...++.+++.+++++.|++.   
T Consensus       271 ggG~Pi~av~~~~~i~~~~~~~--~~~~-~-~~T~~gnpl~~Aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~  344 (428)
T PRK12389        271 GGGLPIGAYGGRKDIMEQVAPL--GPAY-Q-AGTMAGNPASMAAGIACLEVLQQ--EGVYEKLDRLGAMLEEGILEAAEK  344 (428)
T ss_pred             cCCCceeEEeEHHHHHhhhccC--CCcc-c-ccCCccCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3333478888887765554321  1000 0 01114566677777788888765  346677777888887777651   


Q ss_pred             CCCe-EEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          337 LDGV-VVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       337 ~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      ++.+ .+..     ..+++.+.+....              ...+...+  +|+.+.+..                    
T Consensus       345 ~~~~~~v~r-----~~g~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~--------------------  399 (428)
T PRK12389        345 HGITITINR-----LKGALTVYFTDEKVTNYDQAERSDGEAFGKFFKLMLNQGINLAPSK--------------------  399 (428)
T ss_pred             CCCCEEEEe-----cCcEEEEEEeCCCCCChhhhcccCHHHHHHHHHHHHHCCcEeecCC--------------------
Confidence            2321 1111     1234344442110              11222223  466554321                    


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                         ...  +.++..+|++|||++++++++++++
T Consensus       400 ---~~~--~~~~l~~t~e~id~~~~~l~~~l~~  427 (428)
T PRK12389        400 ---YEA--WFLTTAHTEEDIEETLEAVDRAFAQ  427 (428)
T ss_pred             ---CCC--eeecCCCCHHHHHHHHHHHHHHHHh
Confidence               012  2356678999999999999999864

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.77  E-value=1.1e-15  Score=154.14  Aligned_cols=337  Identities=15%  Similarity=0.127  Sum_probs=201.2

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC---CcEEEe-
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP---KEIIFT-  124 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---~~i~~t-  124 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+.+......     .++ ..+...++.++|.+.+..+.   +.++|+ 
T Consensus        60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~-----~~~-~~~~~~~la~~L~~~~p~~~~~~~~v~f~~  133 (464)
T PRK06938         60 VEGRQFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPLHT-----LDL-TTPVKDQFVQDLFASLPEAFAREAKIQFCG  133 (464)
T ss_pred             CCCCEEEEccCCccccccCCCCHHHHHHHHHHHHhhhcccc-----ccc-CCHHHHHHHHHHHHhCcccccccceEEEeC
Confidence            455568887443      35789999999999864221100     011 12455566677777764321   246665 


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHHHHhc-------C--cEEEEEeCCCCCC-----------
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRHLQQE-------G--FEITYLPVGADGI-----------  183 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~~~~~-------G--~~v~~v~~~~~~~-----------  183 (457)
                      ++|++|++.|++....+  ..+.+||... ..|.....+.......       +  ..+..++.+.+..           
T Consensus       134 ~SGSEAve~AlklAr~~--tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  211 (464)
T PRK06938        134 PTGTDAVEAALKLVKTA--TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGV  211 (464)
T ss_pred             CCcHHHHHHHHHHHHHh--hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHH
Confidence            79999999999987754  2345566544 4555555544322100       0  1233444332111           


Q ss_pred             -CCHHHHHHhcCC------CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CCCC
Q 040741          184 -VNLDELRAAIRP------DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VEKW  247 (457)
Q Consensus       184 -~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~~~  247 (457)
                       .+++.+++.+..      +...|+++.+....|.+.|    ++++.++|++||+++|.|+++. +|...  +.  ....
T Consensus       212 ~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv  291 (464)
T PRK06938        212 RANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGI  291 (464)
T ss_pred             HHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCC
Confidence             136778888752      4788999999888888765    8999999999999999999986 43221  11  1123


Q ss_pred             cccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          248 NVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       248 ~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      .+|+++++  | +.|.-.+|+++++++. +.+.+...+      . ....++..+++..+.++.+++  +...++.+++.
T Consensus       292 ~PDiv~~g--KglggG~PlsAv~~~~~~-~~~~~~~~~------~-T~~gnpla~Aaa~a~L~~l~~--~~l~~~~~~~G  359 (464)
T PRK06938        292 IPDVVVLS--KAIGGSLPLAVVVYREWL-DTWQPGAHA------G-TFRGNQMAMAAGSATLRYIKE--HRLAEHAAAMG  359 (464)
T ss_pred             CCCEEEee--ccccCCCceEEEeehhHh-hccCCCCCC------C-CCCcCHHHHHHHHHHHHHHHH--hHHHHHHHHHH
Confidence            58999887  9 4443448999988663 333221111      1 113456677777778888766  35566666667


Q ss_pred             HHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-----------c----hHHHhcc--cCeEecccCccCCCCCChh
Q 040741          327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-----------G----ESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      +++++.|++......++++ ....+.++.+.+....           .    ..+...+  +|+.+..+.          
T Consensus       360 ~~l~~~L~~l~~~~~~i~~-VrG~Glm~gie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g----------  428 (464)
T PRK06938        360 ERLREHLRQLQRDYPQLGD-VRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLILELGG----------  428 (464)
T ss_pred             HHHHHHHHHHHHhCCCeee-eeccceEEEEEeccCcccccccccCCccHHHHHHHHHHHHHCCeEEeecC----------
Confidence            7777666551011111111 1122444445552110           0    1222222  566554321          


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                 ..++.|||.++..+|++|||+++++++++++++
T Consensus       429 -----------~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  461 (464)
T PRK06938        429 -----------RHGSVVRFLPPLIITAEQIDEVAEIFAEAVAAA  461 (464)
T ss_pred             -----------CCCCEEEEECCCccCHHHHHHHHHHHHHHHHHH
Confidence                       012689999999999999999999999999764

>PRK07046 aminotransferase; Validated

Probab=99.77  E-value=1.7e-15  Score=152.39  Aligned_cols=326  Identities=14%  Similarity=0.109  Sum_probs=196.6

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+--|+|+.+.      +..+|++.+++.+.+....  ...      .. .+...++.+.|.+.++.  +.+.|+++||
T Consensus        72 ~DG~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~--~~~------~~-~~~~~~lAe~l~~~~~~--~~v~F~nSGt  140 (453)
T PRK07046         72 VDGHRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL--TTM------LP-SEDAAWVGEELARRFGL--PYWQVATTAT  140 (453)
T ss_pred             CCCCEEEEecccccccccCCCCHHHHHHHHHHHHhCC--CCC------CC-CHHHHHHHHHHHHHhCC--CEEEEECCHH
Confidence            345568886433      2467999999999987532  111      11 14566777888888764  4699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc----------Cc------EEEEEeCCCCCCCCHHHHHHh
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE----------GF------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~----------G~------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      +|+..|++..+.+  ..+++|+.....|.+...........          |.      .+..++.     .|++++++.
T Consensus       141 EA~e~AlrlAR~~--TGr~~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~~  213 (453)
T PRK07046        141 DANRFVLRWARAV--TGRPKILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-----NDLAALEAA  213 (453)
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC-----CCHHHHHHH
Confidence            9999999987764  34566776555444432221111000          11      1111221     288999998


Q ss_pred             cC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh----cCCCcccCCCCcccEEEecccc-ccCC
Q 040741          193 IR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA----LGKIPVDVEKWNVSLMSLSGHK-IYGP  262 (457)
Q Consensus       193 i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~----~g~~~~~~~~~~~Di~~~s~~K-~~g~  262 (457)
                      +. .+...|+++.+....|.+.|    ++++.++|++||+++|+|++++    .|... ......+|+++++  | +.|.
T Consensus       214 l~~~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~gv~PDi~t~g--K~lggG  290 (453)
T PRK07046        214 LADGDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHGLEPDFLVVG--KPIAGG  290 (453)
T ss_pred             hCCCCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhCCCccceeeh--hhhcCC
Confidence            85 46788999999888888876    8999999999999999999985    33321 1112357988765  9 4443


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---C
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---L  337 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~  337 (457)
                      ..+|+++++++..+.+.+.............+  ..++..+++..+.++.+.+  +...++.+++.+++++.|.+.   .
T Consensus       291 ~Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~T~~gnpl~~aa~~a~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~  368 (453)
T PRK07046        291 VPCAVYGFSAELAERAQAAKASAPPGHSGIGTTLSANALAMAAMRATLAEVMT--EAAYAHMLALAARLAAGLRAVIARH  368 (453)
T ss_pred             CcceeeeehHHHHHHHhhccccCCCCCceeCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44899999887655543211000000001112  3456667777778887755  334556666666666655431   2


Q ss_pred             CC-eEEeCCCCCcccceEEEEEcccc-----------ch----HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          338 DG-VVVNGSMERRYIGNLNLSFAYVE-----------GE----SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       338 ~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      +. ..+.+.     +.++.+.|....           ..    .+...+  +||.+.+.                     
T Consensus       369 ~~~~~v~g~-----G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~~~~~---------------------  422 (453)
T PRK07046        369 GLPWHVTRV-----GARVEFQFAPTPPRNGAEAAAALDPELEAALHLYLLNRGVLITPF---------------------  422 (453)
T ss_pred             CCCeEEEEe-----CcEEEEEEeCCCCCCHHHHhcccCHHHHHHHHHHHHHCCCEEecc---------------------
Confidence            21 123232     334444442110           01    111122  45554321                     


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                         .+.+++++.  ++++|||+++++++++++++.
T Consensus       423 ---~~~~~~~p~--~t~~did~~~~~~~~~l~~~~  452 (453)
T PRK07046        423 ---HNMMLVCPA--TTAADVDRLVAAFDACLGELL  452 (453)
T ss_pred             ---cCcEEEeCC--CCHHHHHHHHHHHHHHHHHHh
Confidence               145677764  799999999999999998753

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.77  E-value=5.7e-16  Score=155.10  Aligned_cols=339  Identities=11%  Similarity=0.087  Sum_probs=202.9

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|||+.+.      +..+|++.+++.+.+.... ...+     +....+...++.++|+++++...+.+.|+++||+
T Consensus        43 dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~-~~~~-----~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGse  116 (427)
T TIGR00508        43 DGRRLIDGMSSWWAAIHGYNHPRLNAAAQKQIDKMS-HVMF-----GGFTHKPAIELCQKLVKMTPNALDCVFLADSGSV  116 (427)
T ss_pred             CCCEEEEccchHHHhcCCCCCHHHHHHHHHHHHhcC-Cccc-----cccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHH
Confidence            34458887653      3678999999999987531 1111     0011145567778888887644467999999999


Q ss_pred             HHHHHHHHhhhhhcC---C-CCEEEEcCC-CCcchHHHHHHHHhc--------Cc--EEEEEeCCCC------CCCCHHH
Q 040741          130 SNNVSIKGVMHFYKD---K-KRHVITTQT-EHKCVLDSCRHLQQE--------GF--EITYLPVGAD------GIVNLDE  188 (457)
Q Consensus       130 a~~~al~~~~~~~~~---~-g~~vi~~~~-~h~~~~~~~~~~~~~--------G~--~v~~v~~~~~------~~~d~~~  188 (457)
                      |++.+++....+...   + +.+||.... .|.....+.......        +.  .+..++....      ..-|+++
T Consensus       117 A~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  196 (427)
T TIGR00508       117 AVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITP  196 (427)
T ss_pred             HHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHH
Confidence            999999987755421   1 345665554 455444433221100        00  0112221111      0125677


Q ss_pred             HHHhcC---CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCCcccEEEec
Q 040741          189 LRAAIR---PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKWNVSLMSLS  255 (457)
Q Consensus       189 le~~i~---~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~~~Di~~~s  255 (457)
                      +++.+.   ++...|+++.+ +...|...+    +++|.++|++||+++|+|++|. +|...    .......+|++++ 
T Consensus       197 l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~-  275 (427)
T TIGR00508       197 LAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCV-  275 (427)
T ss_pred             HHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEe-
Confidence            777774   35678888886 565665543    8999999999999999999984 33211    1112235788875 


Q ss_pred             ccccc-CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIY-GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       256 ~~K~~-g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                       .|.+ |. ..+++++.+++..+.+.....+. ... ......++..+++..++++.+.+  +...++.+++.+++++.|
T Consensus       276 -gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~~-~~~-~~T~~g~p~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~L  350 (427)
T TIGR00508       276 -GKALTGGYMTLSATVTTDKVAQTISSGEAGC-FMH-GPTFMGNPLACAVAEASLAILLE--GEWQKQVSAIENQLKREL  350 (427)
T ss_pred             -chhhhcCcccceEEEEcHHHHHHHhcCCCCc-ccc-CCCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHH
Confidence             5943 32 23688888776544443211000 000 00112456777777778887765  345688888888888888


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      ++ +......+ .....+.++.+.+... ....+...+  +||.+.+.                        ...+||++
T Consensus       351 ~~-l~~~~~i~-~vrg~G~~~~i~~~~~~~~~~~~~~l~~~Gv~~~~~------------------------~~~l~~~p  404 (427)
T TIGR00508       351 SP-LRKNPVVK-DVRVLGAIGVVEMYKPVNVEELQKKFVEQGVWIRPF------------------------GKLIYVMP  404 (427)
T ss_pred             HH-hhcCCCEE-eEeccccEEEEEECCccCHHHHHHHHHHCCeEEEec------------------------CCEEEEEC
Confidence            77 42211111 1112245555555322 223444444  57665321                        15799999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +..+|++|||++++++++++++
T Consensus       405 pl~~t~~~id~~~~~l~~~l~~  426 (427)
T TIGR00508       405 PYIITTEQLQKLTAALIEALHE  426 (427)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999853

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=99.76  E-value=8.3e-17  Score=156.27  Aligned_cols=330  Identities=15%  Similarity=0.142  Sum_probs=210.7

Q ss_pred             CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           67 TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        67 ~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      +.-.+++.+|+.+.+.+.. .++..       .+.+...++.++|+++.+ .+-+.++|++||++|++.+++-..+++..
T Consensus        59 Gh~~~~i~~Ai~~Q~~~l~~~~~~~-------~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~~~  131 (449)
T COG0161          59 GHGRPEIAEAIKKQLDKLPHVMFGG-------FTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYWRA  131 (449)
T ss_pred             CcCCHHHHHHHHHHHHhCCchhhcc-------cCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHHHh
Confidence            3567999999999988742 12222       122347788899999988 33567999999999999999988887764


Q ss_pred             CC----CEEEEc-CCCCcchHHHHHHHHhc----------CcEEEEEeCCC------CCC------CCHHHHHHhcC---
Q 040741          145 KK----RHVITT-QTEHKCVLDSCRHLQQE----------GFEITYLPVGA------DGI------VNLDELRAAIR---  194 (457)
Q Consensus       145 ~g----~~vi~~-~~~h~~~~~~~~~~~~~----------G~~v~~v~~~~------~~~------~d~~~le~~i~---  194 (457)
                      .|    .++|.- +.+|.....+.......          -..+..++.+.      ++.      -+.++||+.|.   
T Consensus       132 ~G~p~r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g  211 (449)
T COG0161         132 RGQPQRKKFISRRNGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHG  211 (449)
T ss_pred             cCCCcceEEEEeccCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcC
Confidence            33    336654 44566666554333100          01222333332      111      22567777774   


Q ss_pred             -CCceEEEEeccccc-cccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCC--CcccEEEecccc-c-cC
Q 040741          195 -PDTGLISVMAVNNE-IGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEK--WNVSLMSLSGHK-I-YG  261 (457)
Q Consensus       195 -~~t~li~i~~~~~~-~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~--~~~Di~~~s~~K-~-~g  261 (457)
                       ++...++++.+..- .|++.|    ++++.++|++|||++|.|++-. +|..  .+....  ..+|+++.+  | + .|
T Consensus       212 ~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~a--KGLT~G  289 (449)
T COG0161         212 PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLA--KGLTGG  289 (449)
T ss_pred             cccEEEEEecccccccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeec--cccccc
Confidence             34567777777776 777766    9999999999999999999864 4432  222222  347999888  9 4 45


Q ss_pred             CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          262 PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       262 ~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                      .-.+|+++++++..+.+.... .+....++.+ +.++..+++..+.++++++  +.+.++.+++..++.+.|++.+.+..
T Consensus       290 Y~Pl~a~l~~~~I~~~~~~~~-~~~f~HG~TY-sghPlacAaAla~L~i~e~--e~l~~~~~~~~~~l~~~L~~~l~~~p  365 (449)
T COG0161         290 YLPLSAVLTSDRIYEAFSDGD-AGAFMHGHTY-SGNPLACAAALANLDILEE--EDLLERVAEIGAYLQAGLQAALADHP  365 (449)
T ss_pred             chhhHhHhhhHHHHHHHhccc-CCeeccCCcc-ccCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhcccCC
Confidence            456899998887655543321 1112222333 5667777777788888877  66777777888888888876223222


Q ss_pred             EeCCCCCcccceEEEEEcc-cc---------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe
Q 040741          342 VNGSMERRYIGNLNLSFAY-VE---------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG  409 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~  409 (457)
                      .+++. ...+.+..+.+.. ..         ...+....  +|+.+++..                        +.|-++
T Consensus       366 ~VgdV-R~~Gli~~iElv~d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~g------------------------~~i~~~  420 (449)
T COG0161         366 LVGDV-RGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLG------------------------DVIYLM  420 (449)
T ss_pred             cEEEe-eccceEEEEEEecccccccchhhhHHHHHHHHHHHCCeEEeecC------------------------CEEEEc
Confidence            33321 1123333334421 11         12222222  678777542                        688899


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          410 IGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       410 ~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +.+..|++|||++++++.+++++..
T Consensus       421 PPliit~~eid~l~~~l~~al~~~~  445 (449)
T COG0161         421 PPLIITREEIDELVDALREALDETL  445 (449)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998754

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.76  E-value=8.8e-16  Score=153.34  Aligned_cols=332  Identities=14%  Similarity=0.134  Sum_probs=196.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+++.+.+.....  .      +.. .+...++.+.|.+.++...+.+.|+++||
T Consensus        50 ~dG~~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~--~------~~~-~~~~~~la~~L~~~~~~~~~~v~f~~SGs  120 (433)
T PRK00615         50 SLGKTFIDFCGSWGSLIHGHSHPKICDAIQQGAERGTS--Y------GLT-SEQEILFAEELFSYLGLEDHKIRFVSSGT  120 (433)
T ss_pred             CCCCEEEEcccchhccccCCCCHHHHHHHHHHHHhCCC--C------CCC-CHHHHHHHHHHHHhCCCCcCEEEEeCchH
Confidence            345567887543      35689999999999875321  1      111 24566778888888865435699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCC-CCcch---HHHHHHHHhcCcEE-EEE--eC-CCC----CCCCHHHHHHhcC--
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQT-EHKCV---LDSCRHLQQEGFEI-TYL--PV-GAD----GIVNLDELRAAIR--  194 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~---~~~~~~~~~~G~~v-~~v--~~-~~~----~~~d~~~le~~i~--  194 (457)
                      +|++.|++..+.+  ..+.+|+.... .|...   ..+........... ...  +. ...    ...|++++++.+.  
T Consensus       121 EA~e~AiklAr~~--tgr~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~  198 (433)
T PRK00615        121 EATMTAVRLARGI--TGRSIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSL  198 (433)
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhc
Confidence            9999999987754  23456665444 45433   11211100000000 000  00 000    1127888888874  


Q ss_pred             -CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-c--CCCc-ccCCCCcccEEEeccccccC-CCC
Q 040741          195 -PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-L--GKIP-VDVEKWNVSLMSLSGHKIYG-PKG  264 (457)
Q Consensus       195 -~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~--g~~~-~~~~~~~~Di~~~s~~K~~g-~~G  264 (457)
                       ++...|+++.+.+..|.+.|    +++|.++|++||+++|+|+++. +  |... .......+|++++  .|.+| .-.
T Consensus       199 ~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~gv~PDi~~~--gK~lggG~p  276 (433)
T PRK00615        199 GHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYHVKPDITVY--GKILGGGLP  276 (433)
T ss_pred             CCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcCCCCCeEEE--cccccCCcc
Confidence             45679999999998898887    5699999999999999999994 2  1110 0111225788765  59544 223


Q ss_pred             ceEEEEecCCCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC--CCe
Q 040741          265 VGALYMRRRPRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL--DGV  340 (457)
Q Consensus       265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~  340 (457)
                      +|+++++++..+.+.+.  +.    .+..+  ..++..+++..++++.+++  +...++.+++.+++.+.|++.+  .++
T Consensus       277 ~~av~~~~~i~~~~~~~--~~----~~~~~T~~g~p~~~aa~la~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~g~  348 (433)
T PRK00615        277 AAAVVAHKSIMDHLAPE--GT----IFQAGTLSGNPLAMAAGKASINLCRE--QGFYTQLSTLEQNFLSPIEEMIRSQGF  348 (433)
T ss_pred             eeeeeecHHHHhhhcCC--CC----cccCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            79999988766655321  10    01112  3467778888888888765  3456677777777766555411  122


Q ss_pred             EEeCCCCCcccceEEEEEcccc----------ch----HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          341 VVNGSMERRYIGNLNLSFAYVE----------GE----SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~----------~~----~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                      .+..   .+.+.++.+.|....          ..    .+...+  +||.+.+...                        
T Consensus       349 ~v~~---~r~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~------------------------  401 (433)
T PRK00615        349 PVSL---VRYGSMFSFFFNENRPNNLAEAQLSDIEAFQTFYQSAFSKGVYLSPSPF------------------------  401 (433)
T ss_pred             CeEE---EeeceEEEEEEeCCCCCChHHHhhCCHHHHHHHHHHHHHCCeeecCccc------------------------
Confidence            1111   112455555553211          11    222232  4655543210                        


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                       -...++..+|++|||+++++++++++++-.
T Consensus       402 -~~~~ls~~ht~~did~~~~a~~~~~~~~~~  431 (433)
T PRK00615        402 -EASFLSSAHSMENLDYAQNVLIDSLEKVFS  431 (433)
T ss_pred             -cccceecCCCHHHHHHHHHHHHHHHHHHhc
Confidence             012356667999999999999999987643

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=99.76  E-value=8.8e-16  Score=154.12  Aligned_cols=325  Identities=17%  Similarity=0.149  Sum_probs=196.6

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +..+|++.+++.+.+....   ..     ++ ..+...++.++|++++. ..+.++|++||++
T Consensus        48 dG~~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~---~~-----~~-~~~~~~~la~~L~~~~~-~~~~v~~~~sGse  117 (426)
T PRK00062         48 DGNEYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL---SF-----GA-PTELEVELAELVIELVP-SIEMVRMVNSGTE  117 (426)
T ss_pred             CCCEEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC---cC-----CC-CCHHHHHHHHHHHHhCC-CCCEEEEecCHHH
Confidence            34457776543      2578999999999997622   11     11 12455678888888764 2456999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh-----------cCcEE----EEEeCCCCCCCCHHHHHHhcC
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ-----------EGFEI----TYLPVGADGIVNLDELRAAIR  194 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~-----------~G~~v----~~v~~~~~~~~d~~~le~~i~  194 (457)
                      |++.+++....+  ..+++||.....|.+....+.....           .+...    ..+..+   ..|++++++.+.
T Consensus       118 A~e~Aik~a~~~--~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~~l~~~i~  192 (426)
T PRK00062        118 ATMSAIRLARGY--TGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAP---YNDLEAVEELFE  192 (426)
T ss_pred             HHHHHHHHHHHH--hCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcC---CCCHHHHHHHHH
Confidence            999999987754  2356777666655555433222100           01100    011111   137899998885


Q ss_pred             ---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCC--cc--cCCCCcccEEEeccccccC-C
Q 040741          195 ---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKI--PV--DVEKWNVSLMSLSGHKIYG-P  262 (457)
Q Consensus       195 ---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~--~~--~~~~~~~Di~~~s~~K~~g-~  262 (457)
                         +++++|+++.+.+..|.+.|    +++|.++|++||+++|+|++|.....  ..  ......+|++  +++|.+| .
T Consensus       193 ~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g~~~~~~~~~~~pDi~--~~gK~l~~G  270 (426)
T PRK00062        193 EYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGGAQGYYGVTPDLT--TLGKIIGGG  270 (426)
T ss_pred             hCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccCCccHHHHhCCCcchH--hhhhHhhCC
Confidence               36789999999888999988    99999999999999999999973211  11  1111235764  5569544 2


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG  339 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~  339 (457)
                      ..+|+++++++..+.+.....   ... ......++..+++..++++.++++  ...++.+++.+++++.|.+.   .+.
T Consensus       271 ~p~ga~~~~~~i~~~~~~~~~---~~~-~~T~~~~p~~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~  344 (426)
T PRK00062        271 LPVGAFGGRREIMEQLAPLGP---VYQ-AGTLSGNPLAMAAGLATLKLLKEP--GFYEELEALTKRLAEGLKEAAKKAGI  344 (426)
T ss_pred             CcceeeeEHHHHHHhhccCCC---cee-cccCcCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            237888888766555532110   000 111245667777777888887663  45566666666666666531   322


Q ss_pred             eE-EeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          340 VV-VNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       340 ~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      .. +.+     .+.++.+.+....              ...+...+  +|+.+.+..                       
T Consensus       345 ~~~vrg-----~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~~Gv~v~~~~-----------------------  396 (426)
T PRK00062        345 PLTVNR-----VGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLDEGVYLAPSQ-----------------------  396 (426)
T ss_pred             ceEEEE-----ecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHHCCeEeecCC-----------------------
Confidence            11 111     2344444442110              12333333  566654321                       


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+.++++  ..++++||++++++++++++++
T Consensus       397 ~~~~~~~--~~~t~~ei~~~~~~l~~~l~~~  425 (426)
T PRK00062        397 FEAGFVS--AAHTDEDIEKTLEAARKAFAAL  425 (426)
T ss_pred             cCceeee--ccCCHHHHHHHHHHHHHHHHhh
Confidence            1345554  5679999999999999998764

>PRK06917 hypothetical protein; Provisional

Probab=99.76  E-value=1.4e-15  Score=152.84  Aligned_cols=346  Identities=13%  Similarity=0.116  Sum_probs=204.0

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+++.+.+....   +.  +...+. .+...++.+.|.+++....+.++|+++||
T Consensus        28 ~dG~~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~~---~~--~~~~~~-~~~~~~lae~L~~~~p~~~~~v~f~~sGs  101 (447)
T PRK06917         28 QNGNKYFDGSSGAVTAGIGHGVKEIADAIKEQAEEVS---FV--YRSQFT-SEPAEKLAKKLSDLSPGDLNWSFFVNSGS  101 (447)
T ss_pred             CCCCEEEECchhHHhccCCCCCHHHHHHHHHHHhhCc---Cc--cccccC-CHHHHHHHHHHHHhCCCCCCEEEEeCChH
Confidence            345568887543      3578999999999987631   10  000111 24566788888888864445699999999


Q ss_pred             HHHHHHHHHhhhhhc----CCCCEEEEcCC-CCcchHHHHHHHHhcCc---------EEEEEeCCCC------C------
Q 040741          129 ESNNVSIKGVMHFYK----DKKRHVITTQT-EHKCVLDSCRHLQQEGF---------EITYLPVGAD------G------  182 (457)
Q Consensus       129 ~a~~~al~~~~~~~~----~~g~~vi~~~~-~h~~~~~~~~~~~~~G~---------~v~~v~~~~~------~------  182 (457)
                      +|++.|++....++.    ..+.+|+.... .|.....+.......+.         .+..++.+..      .      
T Consensus       102 EAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  181 (447)
T PRK06917        102 EANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQ  181 (447)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHH
Confidence            999999998765432    12356666554 55555554432211100         1122221110      0      


Q ss_pred             CCCHHHHHHhcC----CCceEEEEecccccc-ccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741          183 IVNLDELRAAIR----PDTGLISVMAVNNEI-GVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN  248 (457)
Q Consensus       183 ~~d~~~le~~i~----~~t~li~i~~~~~~~-G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~  248 (457)
                      .-|++.++++++    ++...|+++.+.... |.+.|    +++|.++|++||+++|+|+++. +|...  +  ......
T Consensus       182 ~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~  261 (447)
T PRK06917        182 LACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVE  261 (447)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCC
Confidence            013466777774    357888999887643 46655    8899999999999999999986 33221  1  111224


Q ss_pred             ccEEEeccccc-cCC-CCceEEEEecCCCccccccccCCccccccc--cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          249 VSLMSLSGHKI-YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIR--SGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       249 ~Di~~~s~~K~-~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~--~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      +|+++++  |. .|. ..+|+++++++..+.+.+..   +.  .+.  ....++..+++..++++.+.+  +...++.++
T Consensus       262 PDi~~~g--K~l~~G~~Pi~a~~~~~~i~~~~~~~~---~~--~~~~~T~~gnpl~~aaa~a~l~~l~~--~~l~~~~~~  332 (447)
T PRK06917        262 PDIMTLG--KGLGAGYTPIAATVVSDRVMEPILRGS---RS--IMSGHTLSANPLSAATALAVLEYMEK--HNLPEKAAE  332 (447)
T ss_pred             CCEEEee--ehhccCCcceEEEEEcHHHHHHHhccC---cc--cccccCCCCCHHHHHHHHHHHHHHHH--CCHHHHHHH
Confidence            7987775  94 333 14799999876554443210   00  011  113466677777778887765  356667777


Q ss_pred             HHHHHHHHHhhcCC-CeEEeCCCCCcccceEEEEEccc--------c----chHHHhcc--cCeEecccCccCCCCCChh
Q 040741          325 LHDRLLNGIKEKLD-GVVVNGSMERRYIGNLNLSFAYV--------E----GESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       325 ~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      +.+++++.|++ +. ...++++ ....+.++.+.|...        .    ...+...+  +|+.+.+.....       
T Consensus       333 ~g~~l~~~L~~-l~~~~~~i~~-vrG~Gl~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~-------  403 (447)
T PRK06917        333 KGEYLIKGLQK-VQQQSTIIGD-VRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQ-------  403 (447)
T ss_pred             HHHHHHHHHHH-HHhcCCCEEE-EeecceEEEEEEeccCCcCCCCcchhHHHHHHHHHHHhCCcEEEeccccc-------
Confidence            77777777665 21 1111111 112244444555211        0    11222222  577664321000       


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                               .....+.+||+++..+|++|||++++++.++++++
T Consensus       404 ---------~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~  438 (447)
T PRK06917        404 ---------DGKEGDAVIIAPPMTITYSELDELLSIFAKSVEEM  438 (447)
T ss_pred             ---------CCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                     00112689999999999999999999999999876

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=99.75  E-value=2.4e-16  Score=141.78  Aligned_cols=356  Identities=15%  Similarity=0.140  Sum_probs=251.3

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      ..+.+.|||--++-+.+|+.+.+.|.+.+...-.- .-..|..|- .|...-+.....++.++|+..+++.++++-|.-+
T Consensus        63 ~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDkWak~-av~gH~~GkvPW~~~De~il~l~~~iVGA~e~EvavmNsLTvNl  141 (465)
T KOG3846|consen   63 SDDKPVIYLCGNSLGLMPKSTRNSINAELDKWAKC-AVEGHFKGKVPWVSIDEPILPLLAPIVGAQENEVAVMNSLTVNL  141 (465)
T ss_pred             CCCCCeEEEeccccccCchhhHhHHHHHHHHHHhh-hhhcccccccceeecchhhhhhhhhhccCCchhhhhHhhhhhHH
Confidence            34578899999999999999999988887653110 000122121 1112344566788999999888899999988878


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE--EEeCC---CCCCCCHHHHHHhcCC---CceEEEE
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT--YLPVG---ADGIVNLDELRAAIRP---DTGLISV  202 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~--~v~~~---~~~~~d~~~le~~i~~---~t~li~i  202 (457)
                      +..+.++-... .+.-+|+.....+++...++.. ++..|..+.  .+.++   ....+-.+++...|+.   ..++|++
T Consensus       142 h~Ll~sFyKPT-ekR~KILlE~kaFPSDhYAiesQ~~lhG~~~e~sm~~iePREGEetlRteDILd~IEkngDeiA~v~f  220 (465)
T KOG3846|consen  142 HSLLISFYKPT-EKRFKILLEKKAFPSDHYAIESQCKLHGISPENSMIQIEPREGEETLRTEDILDTIEKNGDEIALVCF  220 (465)
T ss_pred             HHHHHHhcCCc-chhhhhhhccCCCCchHHHHHhhhhhcCCChHHheEEecccccccchhHHHHHHHHHhcCCeEEEEEe
Confidence            77777665221 2345688888888888877664 355576542  22222   2234666777777753   4689999


Q ss_pred             eccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc--cCCCCceEEEEecCCCccccc
Q 040741          203 MAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI--YGPKGVGALYMRRRPRIRVEP  280 (457)
Q Consensus       203 ~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~--~g~~G~G~l~~~~~~~~~~~~  280 (457)
                      +.+++.||..+++.+|...-+..|+++=.|-||++|-+++.+..|++|+.+.+.+|+  -|+.|+|-+++.++......|
T Consensus       221 SGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHAvgNVpL~LHdWgVDFACWCSYKYlnaGaGgIgGlFvHekh~~~~~p  300 (465)
T KOG3846|consen  221 SGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHAVGNVPLQLHDWGVDFACWCSYKYLNAGAGGIGGLFVHEKHTKESLP  300 (465)
T ss_pred             ecceeecccccchhhhhhcccCCCcEechhhhhhhcCCceEEeecCCceEEEeeecccccCCCccceeeeehhhhcchhh
Confidence            999999999999999997667779999999999999999999999999999999994  467789999999887777777


Q ss_pred             cccCCccc------------------cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhc-----
Q 040741          281 LINGGGQE------------------RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEK-----  336 (457)
Q Consensus       281 ~~~~~~~~------------------~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~-----  336 (457)
                      .+.||...                  .+++...|+.....++...++.+.+ .+.+.+.+.--+..|+.-.++..     
T Consensus       301 rl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~  380 (465)
T KOG3846|consen  301 RLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFAQFNINELRKRSLLLTGYLEYLLKASKGYKH  380 (465)
T ss_pred             HHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHHHhhHHHHhhhhhhHHhHHHHHHHHhcccCc
Confidence            77765321                  3567778999999999999999876 47777777766666665555441     


Q ss_pred             -----CCCeEEeCCC-CCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          337 -----LDGVVVNGSM-ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       337 -----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                           .+-+.+..+. ....+.-+.+.|... -..+.+.|  +|+...                       ....+.||+
T Consensus       381 ~~rt~Kl~~~IiTP~~~~erGcQLsl~Fssp-~~~vfqeL~krGv~~D-----------------------kR~PNvIRv  436 (465)
T KOG3846|consen  381 PLRTEKLFFTIITPTSTDERGCQLSLYFSSP-TPKVFQELHKRGVIGD-----------------------KRRPNVIRV  436 (465)
T ss_pred             hhhhcceeEEEeCCcccccccceEEEEeCCC-chHHHHHHHHcCeecc-----------------------ccCCCceEe
Confidence                 1223444332 122344455555432 24455555  444332                       223489999


Q ss_pred             ec-CCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          409 GI-GRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       409 ~~-~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++ ..+++..||-.++++|.++.+.+.
T Consensus       437 APvpLYN~f~Dvy~f~n~L~e~~d~~e  463 (465)
T KOG3846|consen  437 APVPLYNTFSDVYIFVNALNEAMDKLE  463 (465)
T ss_pred             ecchhhccHHHHHHHHHHHHHHHHHhh
Confidence            96 557999999999999999987654

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=99.75  E-value=2e-15  Score=144.97  Aligned_cols=325  Identities=18%  Similarity=0.163  Sum_probs=202.6

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+--|.|+...-      .-+|.|.+|+.+.++.-.        .+|..+ +.--++.+.+.++++. .+.+-|+++||+
T Consensus        51 DGn~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~--------~fg~Pt-e~Ei~~Aell~~~~p~-~e~vrfvnSGTE  120 (432)
T COG0001          51 DGNEYIDYVLGWGPLILGHAHPAVVEAVQEQLERGL--------SFGAPT-ELEVELAELLIERVPS-IEKVRFVNSGTE  120 (432)
T ss_pred             CCCEeeehhccCcccccCCCCHHHHHHHHHHHHhcC--------CCCCCC-HHHHHHHHHHHHhcCc-ccEEEEecchhH
Confidence            444566654432      347889999999987531        223222 3455566888888885 245999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCc-----------------EEEEEeCCCCCCCCHHHHHHh
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF-----------------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~-----------------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      |...+++..+.+  ..+++|+..+..|....+.+..-...|.                 .+..+|-+     |++.++++
T Consensus       121 AtmsAiRlARa~--TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~  193 (432)
T COG0001         121 ATMSAIRLARAY--TGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEA  193 (432)
T ss_pred             HHHHHHHHHHHh--hCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHH
Confidence            999999987755  4567777766666666555443211121                 12233333     89999999


Q ss_pred             cCC---CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCccc----CCCCcccEEEecccc-cc
Q 040741          193 IRP---DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIPVD----VEKWNVSLMSLSGHK-IY  260 (457)
Q Consensus       193 i~~---~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~~~----~~~~~~Di~~~s~~K-~~  260 (457)
                      ++.   +.+.|+++.+....|.+.|    +++|.++|+++|+++|.|++......+..    .....+|+.++.  | +.
T Consensus       194 ~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlttlG--KiIG  271 (432)
T COG0001         194 FEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLTTLG--KIIG  271 (432)
T ss_pred             HHHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchhhhh--hhhc
Confidence            864   5788999999988999988    88899999999999999999875433321    112246777666  9 55


Q ss_pred             CCCCceEEEEecCCCccccccccCCccccccccCC--CChhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHhh
Q 040741          261 GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT--LPTPLIVGFGSACEIAKKE---MDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       261 g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~al~~al~~~~~~---~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      |.-.+|++.++++..+.+.|.-.-      +..||  .|+..+++-.++++.++..   ++++.+...++.+-+++.+.+
T Consensus       272 GGlP~ga~gGr~eiM~~~~p~g~v------yqaGT~sgnplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~  345 (432)
T COG0001         272 GGLPIGAFGGRAEIMEQLAPLGPV------YQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAER  345 (432)
T ss_pred             CCcceeeeccHHHHHhhhCCCCCc------cccCCCCCcHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            555599999998877665544321      22233  3455666666677766641   444444444455555555544


Q ss_pred             cCCCeEEeCCCCCcccceEEEEEccccc-----------h---HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          336 KLDGVVVNGSMERRYIGNLNLSFAYVEG-----------E---SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                        -++.+..   .+...++.+.|.....           +   .+...+  +||.+.++.+                   
T Consensus       346 --~g~~~~v---~~~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~GV~l~ps~~-------------------  401 (432)
T COG0001         346 --HGIPLTV---NRVGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNRGVYLAPSQF-------------------  401 (432)
T ss_pred             --hCCCeEE---eeecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhCCcccCCccc-------------------
Confidence              2222211   1225555555543111           1   111111  4555544321                   


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                          .  ..-++..++++|||+.+++++++++++..
T Consensus       402 ----e--a~flS~ahte~di~~~~~a~~~~~~~~~~  431 (432)
T COG0001         402 ----E--AGFLSTAHTEEDIDRTLEAADEAFKELAG  431 (432)
T ss_pred             ----c--ceeeecccCHHHHHHHHHHHHHHHHHhhc
Confidence                1  13345567899999999999999988753

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=99.75  E-value=9e-16  Score=154.56  Aligned_cols=323  Identities=17%  Similarity=0.151  Sum_probs=193.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +..+|++.+++.+.+.+....        +.. .+...++.++|.+.+.. .+.+.|+++||
T Consensus        96 ~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~~~--------~~~-~~~~~~lAe~l~~~~p~-~~~v~f~~SGs  165 (474)
T PLN02482         96 VDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSF--------GAP-CLLENVLAEMVIDAVPS-VEMVRFVNSGT  165 (474)
T ss_pred             CCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCCCC--------CCC-CHHHHHHHHHHHHhCCC-CCEEEEeCChH
Confidence            345567886442      256799999999999753211        111 14555677778887753 45799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHH-----------hcCc------EEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-----------QEGF------EITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~-----------~~G~------~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++.|++....+  ..+++|+.....|.+.........           ..|.      .+..++.     .|++++++
T Consensus       166 EA~e~AlklAR~~--tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----nd~~~l~~  238 (474)
T PLN02482        166 EACMGVLRLARAY--TGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPY-----NDLEAVKK  238 (474)
T ss_pred             HHHHHHHHHHHHh--cCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecC-----CChHHHHH
Confidence            9999999987754  334566665544444322111100           0011      1112222     27889998


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc--c--cCCCCcccEEEecccccc
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP--V--DVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~--~--~~~~~~~Di~~~s~~K~~  260 (457)
                      .+.   .+...|+++.+....|.+.|    +++|.++|++||+++|+|+++......  .  ......+|++++  .|.+
T Consensus       239 ~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~--gK~l  316 (474)
T PLN02482        239 LFEANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTL--GKVI  316 (474)
T ss_pred             HHHhCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEe--cchh
Confidence            885   35678999999888898877    678999999999999999998521110  0  011124788765  4943


Q ss_pred             -CCCCceEEEEecCCCccccccccCCccccccccCC--CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741          261 -GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT--LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       261 -g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t--~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                       |...+|+++++++..+.+.+.  + .   .+..+|  .++..+++..++++.+++  +...++.+++.+++++.|.+..
T Consensus       317 ggG~Pigav~g~~ei~~~~~~~--~-~---~~~~~T~~gnpl~~aAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~  388 (474)
T PLN02482        317 GGGLPVGAYGGRREIMEMVAPA--G-P---MYQAGTLSGNPLAMTAGIHTLKRLQQ--PGTYEYLDKITKKLIQGILEAG  388 (474)
T ss_pred             hCCCceEEEEEcHHHHHhhccC--C-C---cccccCcchhHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHHH
Confidence             333488888887765554321  1 0   011223  456667777778887765  4567777778888877776511


Q ss_pred             CC--eEEeCCCCCcccceEEEEEcc--c--------cc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          338 DG--VVVNGSMERRYIGNLNLSFAY--V--------EG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       338 ~~--~~~~~~~~~~~~~~~~~~~~~--~--------~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      ..  +.+..   ....+++.+.|..  +        .+    ..+...+  +||.+.+...                 . 
T Consensus       389 ~~~g~~~~~---~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l~~~Gv~~~~~~~-----------------~-  447 (474)
T PLN02482        389 KKAGHEMCG---GYISGMFGFFFTEGPVYNFADAKKSDTAKFARFHRGMLEEGVYLAPSQF-----------------E-  447 (474)
T ss_pred             HhcCCCEEE---cccceEEEEEEecCCccChhhhccCCHHHHHHHHHHHHHCCeEEeccCC-----------------C-
Confidence            11  11111   0112344444421  0        01    1222222  5666543110                 0 


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                          .  + .++..+|++|||++++++++++++
T Consensus       448 ----~--~-~psl~ht~~dId~~l~al~~~l~~  473 (474)
T PLN02482        448 ----A--G-FTSLAHTEEDIDFTIAAAERVLAR  473 (474)
T ss_pred             ----C--C-cCCCCCCHHHHHHHHHHHHHHHHh
Confidence                0  1 266778999999999999999875

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=99.74  E-value=2.6e-15  Score=150.35  Aligned_cols=334  Identities=14%  Similarity=0.158  Sum_probs=189.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHH-HhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPF-YLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+++.+. ......+..+   .......+..+.+.+.+++++.-+.+.++|++||
T Consensus        55 ~dG~~ylD~~sg~~~~~lGh~~p~i~~Ai~~q~~~~~l~~~~~---~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SG  131 (464)
T TIGR00699        55 VDGNRLLDLYSQISSIPIGYNNPALLKAAQSPEMATTLINRPA---LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSG  131 (464)
T ss_pred             CCCCEEEEccCCHhhhcCCCCCHHHHHHHHHHHHHHhhccccc---CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCc
Confidence            455578888664      36789999999984 2322111111   0111112233333333455654333579999999


Q ss_pred             HHHHHHHHHHhhhhhcCC-------------------------CCEEEEcCCC-CcchHHHHHHHHhc-----C---cEE
Q 040741          128 TESNNVSIKGVMHFYKDK-------------------------KRHVITTQTE-HKCVLDSCRHLQQE-----G---FEI  173 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~-------------------------g~~vi~~~~~-h~~~~~~~~~~~~~-----G---~~v  173 (457)
                      ++|++.|++....++..+                         +.+||..... |.....+.......     +   ..+
T Consensus       132 sEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~~~~  211 (464)
T TIGR00699       132 SDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPAFDW  211 (464)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCCCCc
Confidence            999999999876553211                         2256665554 55554444332110     1   111


Q ss_pred             EEEeCCCC----C----------CCCHHHHHHhcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEe
Q 040741          174 TYLPVGAD----G----------IVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTD  232 (457)
Q Consensus       174 ~~v~~~~~----~----------~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D  232 (457)
                      ..+|.+..    +          .-+++++++++.   ++...|+++.+....|.+.|    +++|.++|++||+++|+|
T Consensus       212 ~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~D  291 (464)
T TIGR00699       212 PQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVD  291 (464)
T ss_pred             eecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe
Confidence            22222210    0          014566777774   35789999999988899887    999999999999999999


Q ss_pred             hhhh-cCCCc--ccCC--CC--cccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHH
Q 040741          233 AAQA-LGKIP--VDVE--KW--NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFG  305 (457)
Q Consensus       233 ~a~~-~g~~~--~~~~--~~--~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~  305 (457)
                      +++. +|...  +...  ..  .+|+++++  |.+|..  |+++.+ +......+...+       .....++..+++..
T Consensus       292 EV~tGfGrtG~~fa~e~~gv~~~PDi~t~g--K~lg~g--G~~~~~-~~~~~~~~~~~~-------~T~~gnp~~~aaa~  359 (464)
T TIGR00699       292 EVQTGVGATGKFWAHEHWNLDDPPDMVTFS--KKFQTA--GYFFHD-PAFRPNKPYRQF-------NTWMGDPSRALILR  359 (464)
T ss_pred             eeeeCCCCCcchhHHHhcCCCCCCCEEEeh--hhhccC--Cccccc-hhccCCCCcccc-------cCCCCCHHHHHHHH
Confidence            9985 33211  1111  11  38997776  966432  333332 211110111111       11245566677777


Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEEeCCCC-CcccceEEEEEcccc-chHHHhcc--cCeEeccc
Q 040741          306 SACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGVVVNGSME-RRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSG  378 (457)
Q Consensus       306 ~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g  378 (457)
                      ++++.+++  +...++.+++.+++++.|++.   +|.+  +++.. ...+.++.+.+.... ...+...+  +|+.+...
T Consensus       360 a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~--i~~vRg~G~Glm~gie~~~~~~~~~i~~~~~~~Gvl~~~~  435 (464)
T TIGR00699       360 EIIQEIKR--KDLLENVAHVGDYLYTGLEDLQKKYPEF--IQNLRGKGRGTFIAWDTPDEAKRDKLLKKARNNGVNIGGC  435 (464)
T ss_pred             HHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCc--eeeecccCeEEEEEEecCCHHHHHHHHHHHHHCCcEEecC
Confidence            78887765  455566666666666666541   3321  11100 012444444443211 22333333  56665321


Q ss_pred             CccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          379 SACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       379 ~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                                             +.+.|||.++..+|++|||.++++|++++
T Consensus       436 -----------------------g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       436 -----------------------GVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             -----------------------CCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence                                   12689999999999999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06149 hypothetical protein; Provisional

Probab=99.74  E-value=2.4e-15  Score=164.59  Aligned_cols=333  Identities=13%  Similarity=0.074  Sum_probs=205.5

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      .+.-|||+.+..    ..+|++.+++.+.+.....+  +   .+   ..+...++.++|++++....+.++|++||++|+
T Consensus       583 dG~~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~~~--~---~~---~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~  654 (972)
T PRK06149        583 AGRSYLDMVNNVTVLGHGHPRLAAAAARQWSLLNTN--S---RF---HYAAVAEFSERLAALAPDGLDTVFLVNSGSEAN  654 (972)
T ss_pred             CCCEEEECCCCccccCCCCHHHHHHHHHHHHhcccc--c---cc---cCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHH
Confidence            445577765432    46899999999988754211  1   11   125677888999999853335699999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh----cCc------EEEEEeCCCC--C---CCC-----HHHHHH
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ----EGF------EITYLPVGAD--G---IVN-----LDELRA  191 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~----~G~------~v~~v~~~~~--~---~~d-----~~~le~  191 (457)
                      +.|++....+. ++.+.|.+....|.....+......    .+.      .+..++.+..  +   ..|     .+++++
T Consensus       655 e~AlklAr~~t-gr~~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~  733 (972)
T PRK06149        655 DLAIRLAWAAS-GRRDVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVA  733 (972)
T ss_pred             HHHHHHHHHhc-CCCeEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHH
Confidence            99999766542 4444455556667666554322110    000      1222322211  1   111     234433


Q ss_pred             hcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCcc---cCC--CCcccEEEec
Q 040741          192 AIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIPV---DVE--KWNVSLMSLS  255 (457)
Q Consensus       192 ~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~~---~~~--~~~~Di~~~s  255 (457)
                      .++      ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++ ++|....   ...  ...+|+++++
T Consensus       734 ~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~g  813 (972)
T PRK06149        734 QLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMA  813 (972)
T ss_pred             HHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEec
Confidence            332      45788999999988898888    999999999999999999999 5554321   111  2357988665


Q ss_pred             cccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          256 GHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       256 ~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                        |..| .-.+|+++++++..+.+...  +. .   +.....++..+++..+.++.+++  +.+.++.+++.+++++.|+
T Consensus       814 --K~lg~G~Pl~av~~~~~i~~~~~~~--~~-~---~sT~~gnP~~~aaala~L~~i~~--e~l~~~~~~~G~~l~~~L~  883 (972)
T PRK06149        814 --KGMGNGHPLGAVITRREIAEALEAE--GY-F---FSSTGGSPVSCRIGMAVLDVLRE--EKLQENARRVGDHLKARLE  883 (972)
T ss_pred             --ccccCCeeeEEEEEcHHHHhhhccC--Cc-c---cCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHH
Confidence              9433 33489999998765554431  10 0   11124566777777778888876  4566777777777777776


Q ss_pred             hc---CCCeEEeCCCCCcccceEEEEEccc------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          335 EK---LDGVVVNGSMERRYIGNLNLSFAYV------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +.   .+.+..+    ...+.++.+.+...      .   ...+...+  +||.+.+..                     
T Consensus       884 ~l~~~~~~i~~v----rG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~l~~~Gvl~~~~g---------------------  938 (972)
T PRK06149        884 ALADRHPLIGAV----HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTG---------------------  938 (972)
T ss_pred             HHHHhCCCeEEE----eecceEEEEEEecCcccCCCChHHHHHHHHHHHhCCeEEeecC---------------------
Confidence            51   3322111    12244444554210      0   11233333  576664321                     


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ...+.|||.+...+|++|||++++++++++++
T Consensus       939 ~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~~  970 (972)
T PRK06149        939 DHLNILKIKPPLCLDRESADFFVDMLDRVLTE  970 (972)
T ss_pred             CCCCEEEEECCCcCCHHHHHHHHHHHHHHHHh
Confidence            11268999999999999999999999999864

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.74  E-value=2.2e-15  Score=155.33  Aligned_cols=323  Identities=12%  Similarity=0.045  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++..|+.+|++. ..++++|+|.+|.+++.+++    .+||.||+++.+|.|+..++...   |+.++|++...
T Consensus       195 G~i~eAe~~aA~~fgAd~-tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~~aLils---ga~PVYl~P~~  266 (713)
T PRK15399        195 GPHLEAEEYIARTFGAEQ-SYIVTNGTSTSNKIVGMYAA----PAGSTLLIDRNCHKSLAHLLMMS---DVVPIWLKPTR  266 (713)
T ss_pred             hHHHHHHHHHHHHhCCCc-EEEEeCChHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeeEEecccc
Confidence            467788999999999864 47888888999999999999    89999999999999999987666   99999997652


Q ss_pred             C-----CCCCH-----HHHHHhcCCC-----ceEEEEeccccccccccChHHHHHHHHhcCCcE-EEehhhhcC--CCcc
Q 040741          181 D-----GIVNL-----DELRAAIRPD-----TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPF-HTDAAQALG--KIPV  242 (457)
Q Consensus       181 ~-----~~~d~-----~~le~~i~~~-----t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~l-i~D~a~~~g--~~~~  242 (457)
                      +     |.++.     +.++++|...     ++.++++++ +..|.++++++|+++|   |+.+ ++|+||+.-  ..+.
T Consensus       267 n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~  342 (713)
T PRK15399        267 NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPI  342 (713)
T ss_pred             cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcc
Confidence            2     24555     8888888643     256777776 5589999999999999   6766 699999731  1111


Q ss_pred             --cCCCC----cccEE---Eecccc-ccCCCCceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHH
Q 040741          243 --DVEKW----NVSLM---SLSGHK-IYGPKGVGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA  311 (457)
Q Consensus       243 --~~~~~----~~Di~---~~s~~K-~~g~~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~  311 (457)
                        +...+    +.|.+   +-|.|| +.+..-.+++-++...- +++...+.      -+.+.+|+.+.++++..|...+
T Consensus       343 ~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~------m~~STSPsY~LmASLD~a~~~m  416 (713)
T PRK15399        343 YQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFM------MHTSTSPSYPIVASVETAAAML  416 (713)
T ss_pred             cCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHH------HHcCCCcHHHHHHHHHHHHHHH
Confidence              11111    35666   889999 55555568887765311 11211111      1234578888999998888877


Q ss_pred             HH-hhHHHHHHHHHHHHHHHHHHhhcCCC------eEEeCCCCCcccceE-------EEEEccccchH-HHhcccCeEec
Q 040741          312 KK-EMDYDHKRITALHDRLLNGIKEKLDG------VVVNGSMERRYIGNL-------NLSFAYVEGES-LLMGLKEVAVS  376 (457)
Q Consensus       312 ~~-~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~~l~~i~~~  376 (457)
                      .. .-.++.++..+.+..+++.+.+ +.+      +.+.+++.-......       ...|++..... .++-++=....
T Consensus       417 ~~~~G~~l~~~~i~~a~~fR~~l~~-~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP~KltI~t  495 (713)
T PRK15399        417 RGNPGKRLINRSVERALHFRKEVQR-LREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDPVKVTILT  495 (713)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHh-ccccccCceeeecCccccCCccceecCCCcccccccccccccccCCCceEEEEe
Confidence            64 4677888888888888888877 554      455442110000000       00111110000 11111111111


Q ss_pred             ccCc-----cCCCC--CChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHH
Q 040741          377 SGSA-----CTSAS--LEPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEM  442 (457)
Q Consensus       377 ~g~~-----~~~~~--~~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~  442 (457)
                      +|..     ...+.  .+-...|+..|+..+. +...|-|-++...+++++++++++|.++-+...+-.|++++
T Consensus       496 ~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~~~d~~~~l~~~  569 (713)
T PRK15399        496 PGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRAYDLNLRVKNM  569 (713)
T ss_pred             cCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhhcccchhhh
Confidence            1211     00000  0012235666776554 45678788888899999999999999886666666666655

>PRK06148 hypothetical protein; Provisional

Probab=99.73  E-value=2.2e-15  Score=164.93  Aligned_cols=339  Identities=13%  Similarity=0.114  Sum_probs=206.4

Q ss_pred             ccCCCcEEecCCCC----CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           53 RIAGRPLYLDMQAT----TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        53 ~~~~~~i~l~~~~~----~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ....+.-|||+.+.    +...|++.+++.+.+.....+  .     .+ ..+...++.++|++.+..+.+.+.|++|||
T Consensus       619 ~D~dG~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l~~~--~-----~~-~~~~~~~lAe~L~~~~p~~~~~v~f~nSGs  690 (1013)
T PRK06148        619 IDNRGRAYLDCFNNVCHVGHAHPRVVAAAARQAARLNTN--T-----RY-LHDAIVAYAERLTATLPDGLTVAFFVNSGS  690 (1013)
T ss_pred             EECCCCEEEEcccChhhcCCCCHHHHHHHHHHHhhcCCc--C-----Cc-CCHHHHHHHHHHHHhCCCCcCEEEEeCCcH
Confidence            33455568887443    367899999999998764211  1     11 125667788888888764445699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHH----h-cC----cEEEEEeCCC--CCCC---C-------H
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQ----Q-EG----FEITYLPVGA--DGIV---N-------L  186 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~----~-~G----~~v~~v~~~~--~~~~---d-------~  186 (457)
                      +|++.|++....+. + +.+||+ ....|.....+.....    . .+    ..+..++...  ....   |       .
T Consensus       691 EA~e~AlklAr~~t-G-r~~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  768 (1013)
T PRK06148        691 EANSLALRLARAHT-G-QRDAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFA  768 (1013)
T ss_pred             HHHHHHHHHHHHhc-C-CCeEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHH
Confidence            99999999877542 3 344554 4555666554432210    0 01    1121122110  0001   1       1


Q ss_pred             HHHHHhcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc---ccCC--CCccc
Q 040741          187 DELRAAIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP---VDVE--KWNVS  250 (457)
Q Consensus       187 ~~le~~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~---~~~~--~~~~D  250 (457)
                      +.++++++      .+...|+++.+....|.+.|    ++++.++|++||+++|.|+++. +|...   +...  ...+|
T Consensus       769 ~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PD  848 (1013)
T PRK06148        769 ESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPD  848 (1013)
T ss_pred             HHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcc
Confidence            34555443      45788999999888888877    9999999999999999999984 54321   1122  23579


Q ss_pred             EEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          251 LMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       251 i~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      +++++  | +.|...+|+++++++..+.+.+..     .. +.....++..+++..+.++.+++  +...++.+++.+++
T Consensus       849 ivt~g--K~lggG~Plgav~~~~ei~~~~~~g~-----~~-~~Tf~gnpla~aaa~a~L~~i~~--e~l~~~~~~~G~~l  918 (1013)
T PRK06148        849 IVTMG--KPIGNGHPMGAVVTTREIADSFDNGM-----EY-FNTFGGNPVSCAIGLAVLDIIED--EDLQRNALEIGNYL  918 (1013)
T ss_pred             eeeec--ccccCCcceEEEEEcHHHHhhccCCC-----cc-ccCCCCCHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH
Confidence            98876  9 444345899999877655543211     00 11123466667777778888876  45666777777777


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEccc-----cc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-----EG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      ++.|++......++++ ....+.++.+.+...     ..    ..+...+  +||.+.+..                   
T Consensus       919 ~~~L~~l~~~~~~i~~-VrG~Gl~~gvel~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-------------------  978 (1013)
T PRK06148        919 LAGLRELQDRFDIIGD-VRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEG-------------------  978 (1013)
T ss_pred             HHHHHHHHHhCCCceE-EeeeceEEEEEecCCccccCccHHHHHHHHHHHHhCCeEEeccC-------------------
Confidence            7776551011111111 111244444444311     01    1233333  577664311                   


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        ...+.|||.++..+|++|||+++++++++++++
T Consensus       979 --~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~~~ 1011 (1013)
T PRK06148        979 --PHDNVLKIRPPLIFSRADADHLLEVLDDVLAAA 1011 (1013)
T ss_pred             --CCCCEEEEeCCccCCHHHHHHHHHHHHHHHHHH
Confidence              112789999999999999999999999999865

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.73  E-value=1.8e-15  Score=146.29  Aligned_cols=346  Identities=17%  Similarity=0.162  Sum_probs=209.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .-+|.|-.++.+ .++++++++|..      |+     .  .|..++.+.++++.+++++|.+.  +++|..|+.+.+++
T Consensus        41 dV~IDLrSDTgT~apS~~m~aAM~~------GD-----D--~Y~gdpSv~~Lee~vael~G~E~--alpthqGRgaE~Il  105 (467)
T TIGR02617        41 DVFIDLLTDSGTGAVTQSMQAAMMR------GD-----E--AYSGSRSYYALAESVKNIFGYQY--TIPTHQGRGAEQIY  105 (467)
T ss_pred             CeEEECccCCCCCCCCHHHHHHHHc------CC-----c--ccccCchHHHHHHHHHHHhCCce--EEECCCCchHHHHH
Confidence            344666677777 589999999986      11     1  11223578899999999999986  99999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCC----CCcchHHHH-HHHHhcCcEEEEEeC----------CCCCCCCHHHHHHhcCC----
Q 040741          135 IKGVMHFYKDKKRHVITTQT----EHKCVLDSC-RHLQQEGFEITYLPV----------GADGIVNLDELRAAIRP----  195 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~----~h~~~~~~~-~~~~~~G~~v~~v~~----------~~~~~~d~~~le~~i~~----  195 (457)
                      ++.++.   .+|+.+++...    .|....+.. -.....|+.+..++.          +.+|.+|+++|+++|++    
T Consensus       106 ~~~~~~---~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~  182 (467)
T TIGR02617       106 IPVLIK---KREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPN  182 (467)
T ss_pred             HHhhcc---cccccccccccccccceEEEEecchHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCC
Confidence            999883   37787776554    344444422 233445887776532          24689999999999984    


Q ss_pred             CceEEEEeccccc-cccccC---hHHHHHHHHhcCCcEEEehhhhcC-C----------CcccCCC------CcccEEEe
Q 040741          196 DTGLISVMAVNNE-IGVIQP---MEEIGQICKEFKIPFHTDAAQALG-K----------IPVDVEK------WNVSLMSL  254 (457)
Q Consensus       196 ~t~li~i~~~~~~-~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g-~----------~~~~~~~------~~~Di~~~  254 (457)
                      +...+.....+|. .|.+.|   ++++.++|++||+.+|+|+|.-+- +          ...++.+      ..+|.+++
T Consensus       183 ~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~  262 (467)
T TIGR02617       183 NVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAM  262 (467)
T ss_pred             CceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEE
Confidence            2334444444554 466777   668888999999999999987542 2          2222221      25899999


Q ss_pred             cccc-ccCCCCceEEEEecCCC----ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040741          255 SGHK-IYGPKGVGALYMRRRPR----IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       255 s~~K-~~g~~G~G~l~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      |++| ++.|.| |+++++++..    .+++....  -.+....+|..+...+.++...+....+  +...+.--...+||
T Consensus       263 slsKglgApvG-g~Lag~d~~~~~l~~~~~~~~i--~~EGf~tYGGlagrd~ea~a~Gl~e~~~--~~yl~~ri~qv~yl  337 (467)
T TIGR02617       263 SAKKDAMVPMG-GLLCFKDDSFFDVYTECRTLCV--VQEGFPTYGGLEGGAMERLAVGLYDGMN--LDWLAYRINQVQYL  337 (467)
T ss_pred             EcCCCCCCccc-ceEEecchhHHHHHHHHHhhcc--cccCCcCcCchhHHHHHHHHhhhhhccc--HHHHHHHHHHHHHH
Confidence            9999 555766 8888887511    12222111  1112245566666677777655654433  33333444455677


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEE----Eccc-----cchHHHhcc---cCeE-ecccCccCCCCCChhHHHHHcC
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLS----FAYV-----EGESLLMGL---KEVA-VSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-----~~~~~~~~l---~~i~-~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      .+.|.+  -|+.+.. . +  +..+.+.    ++.+     .+..+...|   .||- +.-|+.......+       -|
T Consensus       338 ~~~L~~--~Gvpi~~-~-G--ghav~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~-------~~  404 (467)
T TIGR02617       338 VNGLEE--IGVVCQQ-A-G--GHAAFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPK-------TG  404 (467)
T ss_pred             HHHHHh--CCCcEEe-c-C--ccEEEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCC-------CC
Confidence            777777  4665543 1 2  1222221    1222     234454444   2332 1223221100000       00


Q ss_pred             CCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhcC
Q 040741          397 VDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREMS  437 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~~  437 (457)
                      ......-..+|+++.+- -|.+++|+++++++...++-....
T Consensus       405 ~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~i~  446 (467)
T TIGR02617       405 KQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPNIK  446 (467)
T ss_pred             ccCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhhcC
Confidence            00011136899998874 478999999999999887654433

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.73  E-value=8.2e-16  Score=158.51  Aligned_cols=321  Identities=11%  Similarity=0.009  Sum_probs=206.4

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++..|+.+|++. ..++++|+|.+|.+++.+++    .+||.||+++.+|.|+..++...   |+.++|++...
T Consensus       195 G~i~eAe~~AA~~fgAd~-tyfvvNGTS~~n~av~~a~~----~~Gd~VLvdRN~HKSv~haLils---ga~PVYl~P~r  266 (714)
T PRK15400        195 GPHKEAEEYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTVLIDRNCHKSLTHLMMMS---DVTPIYFRPTR  266 (714)
T ss_pred             hHHHHHHHHHHHHhCCCc-EEEEeCchHHHHHHHHHHhc----CCCCEEEeecccHHHHHHHHHHc---CCeEEEecccc
Confidence            467889999999999874 47788888999999999998    89999999999999999987666   99999997653


Q ss_pred             C-----CCCC-----HHHHHHhcCCCc--e---EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCC--Ccc-
Q 040741          181 D-----GIVN-----LDELRAAIRPDT--G---LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK--IPV-  242 (457)
Q Consensus       181 ~-----~~~d-----~~~le~~i~~~t--~---li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~--~~~-  242 (457)
                      +     +.++     .+.++++|...+  +   .++++++ +..|.+++++.|+++|+.++  |++|+||+.-.  .+. 
T Consensus       267 n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~  343 (714)
T PRK15400        267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY  343 (714)
T ss_pred             cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEEccchhhhccCccc
Confidence            2     2345     789999886432  2   5777766 55899999999999999887  79999997421  111 


Q ss_pred             -cCC--CCcc---c--EEEecccc-ccCCCCceEEEEecCCCc--cccccccCCccccccccCCCChhHHHHHHHHHHHH
Q 040741          243 -DVE--KWNV---S--LMSLSGHK-IYGPKGVGALYMRRRPRI--RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA  311 (457)
Q Consensus       243 -~~~--~~~~---D--i~~~s~~K-~~g~~G~G~l~~~~~~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~  311 (457)
                       +..  ..+.   |  +++-|.|| +.|..-.+++-++.. ++  ++...+.      -+.+.+|+.+.++++..|...+
T Consensus       344 ~~~sam~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~-vd~~~~n~a~~------m~~STSPsY~l~ASLD~a~~~m  416 (714)
T PRK15400        344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGD-VNEETFNEAYM------MHTTTSPHYGIVASTETAAAMM  416 (714)
T ss_pred             CCcChhhcCCCCCCceEEEEchhhcccchhHHhHHHHcCC-CCHHHHHHHHH------HHcCCCcHHHHHHHHHHHHHHH
Confidence             011  1233   5  89999999 455554566666543 22  1211111      0234578888999998888877


Q ss_pred             HH-hhHHHHHHHHHHHHHHHHHHhhcCCC------eEEeCCCCCcccceE-------EEEEccccch-HHHhcccCeEec
Q 040741          312 KK-EMDYDHKRITALHDRLLNGIKEKLDG------VVVNGSMERRYIGNL-------NLSFAYVEGE-SLLMGLKEVAVS  376 (457)
Q Consensus       312 ~~-~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~l~~i~~~  376 (457)
                      .. .-.+..++..+.+..+++.|.+ +++      +.+.++..-.-..+.       ...|++.... -.++-++=....
T Consensus       417 ~~~~G~~l~~~~i~~a~~~R~~l~~-~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~Klti~t  495 (714)
T PRK15400        417 KGNAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPIKVTLLT  495 (714)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHh-CCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCceEEEEe
Confidence            64 4678888888889999999988 666      555542210000000       0011111000 011111111111


Q ss_pred             ccCccC-----CCCC--ChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhH
Q 040741          377 SGSACT-----SASL--EPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLY  440 (457)
Q Consensus       377 ~g~~~~-----~~~~--~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~  440 (457)
                      +|....     .+..  .-...|+..|+..+. ....|-|-++...|+++++.++++|.++-+...+-.|++
T Consensus       496 pgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~~~d~n~~l~  567 (714)
T PRK15400        496 PGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVK  567 (714)
T ss_pred             CCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhhccccchh
Confidence            121100     0000  011234566765554 456788888889999999999999998755544333433

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=99.73  E-value=8.5e-15  Score=147.67  Aligned_cols=334  Identities=13%  Similarity=0.092  Sum_probs=196.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC---CcEEEeC
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP---KEIIFTS  125 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---~~i~~t~  125 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....  +..   ... ...+...++.++|.+.++...   ..++|++
T Consensus        55 ~dG~~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~--~~~---~~~-~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~  128 (459)
T PRK06931         55 VEGNQYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGL--PLH---TLD-LTTPLKDAFSEYLLSLLPGQGKEYCLQFTGP  128 (459)
T ss_pred             CCCCEEEEcccchhhccCCCCCHHHHHHHHHHHhhhc--ccc---ccc-cCCHHHHHHHHHHHHhCCCccccceEEEeCC
Confidence            345568887544      3578999999999886421  000   000 112556677788888875321   1245668


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHhc----C-----cEEEEEeCCCCC--------CCCHH
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQE----G-----FEITYLPVGADG--------IVNLD  187 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~~----G-----~~v~~v~~~~~~--------~~d~~  187 (457)
                      |||+|++.|++....+  ..+++||.... .|.....+.......    +     ..+..++.+...        .-+.+
T Consensus       129 SGsEAve~AlklAr~~--tgr~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (459)
T PRK06931        129 SGADAVEAAIKLAKTY--TGRSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVK  206 (459)
T ss_pred             CcHHHHHHHHHHHHHh--cCCCeEEEECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHH
Confidence            9999999999987754  33456665554 555554444322110    0     123333332110        01223


Q ss_pred             HH----HHhcC------CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--cc--CCCCc
Q 040741          188 EL----RAAIR------PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VD--VEKWN  248 (457)
Q Consensus       188 ~l----e~~i~------~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~--~~~~~  248 (457)
                      .+    ++.++      ++...|+++.+....|.+.|    ++++.++|++||+++|+|+++. +|...  +.  .....
T Consensus       207 ~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~  286 (459)
T PRK06931        207 ALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIE  286 (459)
T ss_pred             HHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCC
Confidence            22    33332      34788899999888888765    8999999999999999999986 43221  11  12235


Q ss_pred             ccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          249 VSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       249 ~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      +|+++++  | +.|.-.+|+++.+++ .+.+.+...+      .. ...++..+++..+.++.+++  +...++.+++.+
T Consensus       287 PDivt~g--K~l~gG~Pi~av~~~~~-~~~~~~~~~~------~T-~~gnpla~aaala~L~~l~~--~~l~~~~~~~G~  354 (459)
T PRK06931        287 PDIIVMS--KAVGGGLPLAVLGIKKE-FDAWQPGGHT------GT-FRGNQLAMATGLTTLKILKE--ENLAQNAAERGE  354 (459)
T ss_pred             CCEEEec--ccccCCcceeeeeeHHH-HhhccCCCCC------CC-CCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHH
Confidence            8999887  9 443334788887754 2333221111      11 14566677777778887766  345566666666


Q ss_pred             HHHHHHhhc---CCCeEEeCCCCCcccceEEEEEcccc-----------ch----HHHhcc--cCeEecccCccCCCCCC
Q 040741          328 RLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYVE-----------GE----SLLMGL--KEVAVSSGSACTSASLE  387 (457)
Q Consensus       328 ~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~----~~~~~l--~~i~~~~g~~~~~~~~~  387 (457)
                      ++++.|++.   .|.   +++ ....+.++.+.+....           ..    .+...+  +|+.+.+..        
T Consensus       355 ~l~~~L~~l~~~~~~---i~~-vrG~Glm~giel~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~--------  422 (459)
T PRK06931        355 WLKAQLAELQKRYPC---IGN-VRGRGLMIGIEIVDERQPADAMGSYPADGELAAAIQKACFENGLLLERGG--------  422 (459)
T ss_pred             HHHHHHHHHHHhCCC---eEe-EecCceEEEEEEccCcccccccccCCccHHHHHHHHHHHHHCCcEEeecC--------
Confidence            666666551   332   111 1122444445552110           01    122222  466554211        


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                   ...+.+||.++..+|++|||+++++++++++++
T Consensus       423 -------------~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~  455 (459)
T PRK06931        423 -------------RNGNVVRLLPPLLITQAECEEFIDRFEQALLAA  455 (459)
T ss_pred             -------------CCCCEEEEECCCCcCHHHHHHHHHHHHHHHHHH
Confidence                         112689999999999999999999999999865

>PRK08297 L-lysine aminotransferase; Provisional

Probab=99.72  E-value=3.8e-15  Score=149.62  Aligned_cols=336  Identities=16%  Similarity=0.129  Sum_probs=196.1

Q ss_pred             CCcEEecCCCC------CCCCHHHHH--HHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeC
Q 040741           56 GRPLYLDMQAT------TPVDPRVLD--AMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~--a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~t~  125 (457)
                      .+.-|||+.+.      +...|++.+  ++.+.+....- .+...    ... .+...++.+.|+++.+ -..+.++|++
T Consensus        43 dG~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~----~~~-~~~~~~la~~l~~~~~p~~~~~v~f~~  117 (443)
T PRK08297         43 TGRRYLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNS----DVY-TVEMARFVDTFARVLGDPELPHLFFVD  117 (443)
T ss_pred             CCCEeeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccC----CcC-CHHHHHHHHHHHhhcCCCCCCEEEEeC
Confidence            34458886543      357899999  99988865321 11110    111 2455667777888762 2235699999


Q ss_pred             ChHHHHHHHHHHhhhhhc------C----CCCEEEEcCCC-CcchHHHHHHHHhc-----CcEE---EEEeCCC-----C
Q 040741          126 GATESNNVSIKGVMHFYK------D----KKRHVITTQTE-HKCVLDSCRHLQQE-----GFEI---TYLPVGA-----D  181 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~------~----~g~~vi~~~~~-h~~~~~~~~~~~~~-----G~~v---~~v~~~~-----~  181 (457)
                      ||++|++.|++....+..      .    .+.+||..... |.....+.......     ....   ..++...     .
T Consensus       118 SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (443)
T PRK08297        118 GGALAVENALKVAFDWKSRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLP  197 (443)
T ss_pred             chHHHHHHHHHHHHHHhhccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCc
Confidence            999999999998765421      1    13567766654 54444443322100     0000   0011110     0


Q ss_pred             C----------CCCHHHHHHhcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--
Q 040741          182 G----------IVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--  241 (457)
Q Consensus       182 ~----------~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--  241 (457)
                      +          .-|++++++.+.   ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++. +|...  
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~  277 (443)
T PRK08297        198 GEDLEEVEALEAEALAQARAAFERHPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTA  277 (443)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchH
Confidence            0          013455666664   56789999999988888755    8999999999999999999985 44321  


Q ss_pred             c--cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHH
Q 040741          242 V--DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDH  319 (457)
Q Consensus       242 ~--~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~  319 (457)
                      +  ......+|+++++  |.++   +|.++++++..+........... . ......++..+++..++++.+.+  +...
T Consensus       278 ~a~~~~gv~PDiv~~g--K~l~---~~a~l~~~~i~~~~~~~~~~~~~-~-~~T~~gnpl~~aaa~a~L~~l~~--~~l~  348 (443)
T PRK08297        278 WAYQQLGVRPDIVAFG--KKTQ---VCGIMAGRRVDEVEDNVFAVSSR-I-NSTWGGNLVDMVRARRILEVIEE--DGLV  348 (443)
T ss_pred             HHHHhcCCCCCEEEec--cccc---ccceecchHHHHhhhhhccCccc-c-CCCCCccHHHHHHHHHHHHHHHh--cCHH
Confidence            1  1112258999765  9653   23333443311111011100000 0 01113456667777777877765  3566


Q ss_pred             HHHHHHHHHHHHHHhhc---CCCe--EEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741          320 KRITALHDRLLNGIKEK---LDGV--VVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       320 ~~~~~~~~~l~~~l~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      ++.+++.+++++.|++.   .+.+  .+.+     .+.++.+.+.... ...+...+  +|+.+.+..            
T Consensus       349 ~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-----~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~~------------  411 (443)
T PRK08297        349 ENAARQGEYLLARLEELAAEFPAVVSNVRG-----RGLMCAFDLPTTADRDEVIRRLWEEGVLVLPCG------------  411 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcceeeec-----cceEEEEEecCHHHHHHHHHHHHHCCEEEecCC------------
Confidence            66777777777766551   3322  2222     2455555664221 22344444  577764321            


Q ss_pred             HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                 ...+||.++..+|++|||+++++++++++++
T Consensus       412 -----------~~~lr~~P~l~~t~~eid~~l~~l~~~l~~~  442 (443)
T PRK08297        412 -----------ERSIRFRPALTVTTEEIDAAIDALRRALPEV  442 (443)
T ss_pred             -----------CCeEEEECCccCCHHHHHHHHHHHHHHHHhh
Confidence                       1579999999999999999999999998765

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=99.72  E-value=6.9e-15  Score=143.15  Aligned_cols=291  Identities=19%  Similarity=0.206  Sum_probs=178.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~  174 (457)
                      ..+..+..-+++.++++++|.+..+.-+-.++|.+-+.++++... .++++++|+++...|+.+...++ ++...|++++
T Consensus       105 sQG~Lq~lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~-~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~~iv  183 (429)
T PF02347_consen  105 SQGRLQALFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRA-TKRKRNKVLVPESLHPQTRAVLRTYAAPLGIEIV  183 (429)
T ss_dssp             BHHHHHHHHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHH-HTT---EEEEETTS-CHHHHHHHHHCCHCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHh-cccCCcEEEEcCCcChhhHHHHHHhhhhCCeEEE
Confidence            455668888999999999999876678888999888877776653 22445799999999999988766 3456799999


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhh--cCCCcccCCCCcccEE
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA--LGKIPVDVEKWNVSLM  252 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~--~g~~~~~~~~~~~Di~  252 (457)
                      .++.+.++..|        ++++..|++..|++ .|.+.++++|.+++|++|.++++ ++..  ++.+ ....++|+|++
T Consensus       184 ~~~~~~~~~~d--------~~~~a~v~vq~Pn~-~G~~ed~~~i~~~~h~~gal~~~-~ad~~aL~~l-~~Pge~GADI~  252 (429)
T PF02347_consen  184 EVPLDEDGTTD--------DDDTAAVMVQNPNT-FGVFEDIKEIADIAHAAGALVIV-GADPNALGGL-KSPGEYGADIV  252 (429)
T ss_dssp             EE-BBTTCSB---------STTEEEEEEESS-T-TSB--THHHHHHHHHHTT-EEEE-CGGCCGCCTC---GGGGT-SEE
T ss_pred             EecccccCCcc--------ccCeEEEEeecCCC-CceEeeHHHHHHHHHHcCCEEEE-ecCHHHHhCc-CChhhcCccEE
Confidence            99988887776        78899999999964 89999999999999999999998 6553  2322 23457799999


Q ss_pred             Eecccc-c-----cCCCCceEEEEecCCCccccccccC------Cc-----------cccccccCCCChh---HH---HH
Q 040741          253 SLSGHK-I-----YGPKGVGALYMRRRPRIRVEPLING------GG-----------QERGIRSGTLPTP---LI---VG  303 (457)
Q Consensus       253 ~~s~~K-~-----~g~~G~G~l~~~~~~~~~~~~~~~~------~~-----------~~~~~~~~t~~~~---~~---~a  303 (457)
                      +++ +| +     ||.++.|++.+++++..++.-.+.|      |.           |+-+....|.|+.   .+   .+
T Consensus       253 vg~-~Q~fg~p~~~GGP~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAtSNIctnqaL~A~~a  331 (429)
T PF02347_consen  253 VGE-HQTFGIPMGFGGPGAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKATSNICTNQALLALAA  331 (429)
T ss_dssp             EEC-CTTTT---CCC-S--EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCSTT---SS-HHHHHHH
T ss_pred             eeC-CCCCcccCCCCCCCeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchhhhhhhhHHHHHHHH
Confidence            777 66 3     4566799999999866665433332      10           1111122344332   22   22


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCcc
Q 040741          304 FGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSAC  381 (457)
Q Consensus       304 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~  381 (457)
                      ...+..+..+++.++.++...++.|+.+.|.+ +.++.+..   ..+...+....+.....+++...  .|+...     
T Consensus       332 ~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~-~~~~~~~~---~~f~e~v~~~~~~~~~~~l~~~~~~~gl~~~-----  402 (429)
T PF02347_consen  332 AIYLAYLGPEGLREIAERIHLNAHYLAERLKK-IYGLPFDN---PFFFEFVVVFSKDKEVEELLKRGIEGGLNLR-----  402 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-TTBECSSS---SSBSSEEEEESS-HHHHHHHHTT----EEEG-----
T ss_pred             HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-hcCcccCC---CCceeeeeecCCcHHHHHHHHHHHhcCCCcc-----
Confidence            22233334567999999999999999999999 54443322   22233332222221222333333  232221     


Q ss_pred             CCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          382 TSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       382 ~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                                        ....+.+-+++...+|+||||.+++++
T Consensus       403 ------------------~~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  403 ------------------YPDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             ------------------GG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             ------------------ccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence                              011258889999999999999999875

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=99.71  E-value=2.7e-14  Score=143.30  Aligned_cols=332  Identities=16%  Similarity=0.127  Sum_probs=188.1

Q ss_pred             CcEEecCCCC------CCCCHHHH--HHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEEeCC
Q 040741           57 RPLYLDMQAT------TPVDPRVL--DAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIFTSG  126 (457)
Q Consensus        57 ~~i~l~~~~~------~~~~~~v~--~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~t~g  126 (457)
                      +.-|||+.+.      +...|++.  +++.+.+.+.. ..+.. ..    ...+...++.++|+++.+ -..+.++|++|
T Consensus        37 G~~ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~-~~----~~~~~~~~l~~~l~~~~~~~~~~~v~f~~s  111 (431)
T TIGR03251        37 GRRYLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSN-SD----VYTVAMARFVDTFARVLGDPALPHLFFIEG  111 (431)
T ss_pred             CCChhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhccccc-CC----CCCHHHHHHHHHHHHhcCCCCcCEEEEeCC
Confidence            4457776443      25678898  89888887532 11111 00    112455566667777752 22356999999


Q ss_pred             hHHHHHHHHHHhhhhhcC-------C---CCEEEEcCCC-CcchHHHHHHHHhcCcEEE--------EEeCC-------C
Q 040741          127 ATESNNVSIKGVMHFYKD-------K---KRHVITTQTE-HKCVLDSCRHLQQEGFEIT--------YLPVG-------A  180 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~-------~---g~~vi~~~~~-h~~~~~~~~~~~~~G~~v~--------~v~~~-------~  180 (457)
                      ||+|++.|++....+..+       +   +.+|+..... |.....+.......+..-.        .++..       .
T Consensus       112 GsEAve~AlklAr~~t~~~~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  191 (431)
T TIGR03251       112 GALAVENALKTAFDWKSRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDA  191 (431)
T ss_pred             cHHHHHHHHHHHHHHhhcchhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccc
Confidence            999999999988755311       1   3567766654 5554444332211001100        01111       0


Q ss_pred             CC--------CCCHHHHHHhcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----
Q 040741          181 DG--------IVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----  240 (457)
Q Consensus       181 ~~--------~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----  240 (457)
                      ..        .-+++++++.+.   +++..|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|..    
T Consensus       192 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~  271 (431)
T TIGR03251       192 PNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAW  271 (431)
T ss_pred             cccchhhHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHH
Confidence            00        013455566663   57889999999988898764    8999999999999999999987 4432    


Q ss_pred             cccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHH
Q 040741          241 PVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHK  320 (457)
Q Consensus       241 ~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~  320 (457)
                      ..+.....+|+++++  |.+ | ..|++. +++..+........... . ....+.++..+++..++++.+.++  ...+
T Consensus       272 a~~~~gv~PDi~~~g--K~~-~-~~g~~~-~~~i~~~~~~~~~~~~~-~-~~T~~gnpl~~aaa~a~L~~l~~~--~l~~  342 (431)
T TIGR03251       272 AYQQLGVQPDIVAFG--KKT-Q-VCGIMA-GRRVDEVADNVFAVPSR-L-NSTWGGNLVDMVRATRILEIIEEE--RLVD  342 (431)
T ss_pred             HHHhcCCCCCEEEec--ccC-c-cceEEe-cchHHHhhhhcccCccc-c-CCCCCCCHHHHHHHHHHHHHHHhc--CHHH
Confidence            111223358999765  854 3 235554 33211111101100000 0 011235667777777888887652  3344


Q ss_pred             HHHHHHHHHHHHHhh---cCCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHH
Q 040741          321 RITALHDRLLNGIKE---KLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRA  394 (457)
Q Consensus       321 ~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~  394 (457)
                      +.+++.+++.+.|++   ..+++.  .+. ...+.++.+.+...+ ...+...+  +||.+.+..               
T Consensus       343 ~~~~~g~~l~~~L~~l~~~~~~~i--~~v-rg~G~~~~i~~~~~~~~~~~~~~l~~~Gvl~~~~g---------------  404 (431)
T TIGR03251       343 NARVQGAHLLARLHELAAEFPHLV--SNP-RGRGLMCAFDLPSTADRDEVIRQLYREGVLLLGCG---------------  404 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccce--ecc-cccceeEEEEeCCHHHHHHHHHHHHhCCeEEecCC---------------
Confidence            445555555544433   133232  211 222455556664321 12344444  577664321               


Q ss_pred             cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       395 ~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                              ...+||+++..+|++|||++++++.+
T Consensus       405 --------~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       405 --------ERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             --------CCeEEEECCccCCHHHHHHHHHHHHh
Confidence                    16799999999999999999999876

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=99.69  E-value=7.3e-15  Score=136.79  Aligned_cols=336  Identities=14%  Similarity=0.089  Sum_probs=205.9

Q ss_pred             eecccccCCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcE
Q 040741           48 TLKGVRIAGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI  121 (457)
Q Consensus        48 ~~~~~~~~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i  121 (457)
                      .++.+....+.-|||+-+.      +.+.|++.+++.+.+...|-..      .++. .+...++.+.|++.+..+-+.+
T Consensus        40 ~~~ylyDe~G~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t------~~~~-~~pi~~~Ae~L~s~~P~~l~~v  112 (442)
T KOG1404|consen   40 EGQYLYDEEGRRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTT------SGYL-NPPIHDLAEALVSKLPGDLKVV  112 (442)
T ss_pred             ceEEEEcCCCceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEee------cccc-CCcHHHHHHHHHHhCCCCceEE
Confidence            3444555667778887653      3688999999999986654221      1222 2466667777777776666669


Q ss_pred             EEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEE------------eCC--CC----CC
Q 040741          122 IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL------------PVG--AD----GI  183 (457)
Q Consensus       122 ~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v------------~~~--~~----~~  183 (457)
                      +|++||++||+++++-...+. +.-+.|-..+..|.+...++...   |.....-            ..+  ..    +.
T Consensus       113 fF~nsGsEANelal~mar~Yt-~~~diIa~r~~YHG~t~~t~glt---~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~  188 (442)
T KOG1404|consen  113 FFVNSGSEANELALKMARLYT-GNLDIIARRNSYHGNTLYTLGLT---GLSPWKQNFPGVASGVHHTMNPDPYRGIFGGS  188 (442)
T ss_pred             EEecCCchHHHHHHHHHHHhc-CCceEEEeeccccCCchhhcccc---cCCcccccCCCCCCcccccCCCCcccccCCCC
Confidence            999999999999999766543 44455556666777776654433   2211111            000  00    00


Q ss_pred             -----C--CHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cccCC
Q 040741          184 -----V--NLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVDVE  245 (457)
Q Consensus       184 -----~--d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~~~  245 (457)
                           -  -.++++..|-    +..+.++++.++.-.|.+.+    +++..++|+++|.++|.|++++. |..  -..+.
T Consensus       189 ~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe  268 (442)
T KOG1404|consen  189 NEEEASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFE  268 (442)
T ss_pred             chhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccccccccc
Confidence                 0  0133444432    23467778888887888865    89999999999999999999974 322  12222


Q ss_pred             CC--cccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH
Q 040741          246 KW--NVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI  322 (457)
Q Consensus       246 ~~--~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~  322 (457)
                      ..  -+||++.+  | +.+...+|+++++++....+......+     ..++.. +...++..+.++.+++  +++.++.
T Consensus       269 ~h~v~PDIvTmA--KgiGnG~Pl~AVvtt~EIa~v~~~~~~~f-----nTyggn-P~a~avg~aVL~Vike--e~LqE~a  338 (442)
T KOG1404|consen  269 SHGVVPDIVTMA--KGIGNGFPLGAVVTTPEIADVLNQKSSHF-----NTYGGN-PVACAVGLAVLKVIKE--ENLQENA  338 (442)
T ss_pred             ccCCCccHHHHH--hhccCCCcceeeecCHHHHHHHHhccccc-----cccCCC-chhHHHHHHHHHHHHH--HhHHHHH
Confidence            22  36877666  9 444456999999987555444333211     223333 4444444467887776  7888889


Q ss_pred             HHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc----------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          323 TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE----------GESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       323 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      .+...++++.|.+......++++. ...+-++-+.+-...          ...+.+..  .|+.+--|.           
T Consensus       339 a~vG~yl~~~l~~l~d~h~iIGdV-RG~GLm~GvE~V~dk~~~~pp~~~~~~~i~~~cke~Gvlvg~g~-----------  406 (442)
T KOG1404|consen  339 AEVGSYLLEKLAALKDKHPIIGDV-RGRGLMLGVELVSDKSEPKPPATAEGAVIGEQCKELGVLVGKGG-----------  406 (442)
T ss_pred             HHHHHHHHHHHHHHhhcCCceeec-ccceeEEEEEEecccCCCCCcchHHHHHHHHHHHHhCeeeeccc-----------
Confidence            999999999988733345556542 222333333332111          11222222  255542221           


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                                ...+.+||.++...|+||||.+++..
T Consensus       407 ----------i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  407 ----------IHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             ----------ccceEEEecCCeeccHHHHHHHHHHH
Confidence                      22369999999999999998777765

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.66  E-value=2.2e-15  Score=132.65  Aligned_cols=285  Identities=15%  Similarity=0.077  Sum_probs=193.8

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCC
Q 040741          105 TARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI  183 (457)
Q Consensus       105 ~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~  183 (457)
                      ++...+++--+.+++++++..|+-+.+.+.++..+    .|| ++|++..++|.-+...+..-   +++|+.+|.+.+..
T Consensus        73 ~ls~a~~~dkpLt~dnic~GvGsDE~ID~iiR~~c----~PGkeKIl~cPPtysMY~v~A~iN---d~eVvkvpl~pdF~  145 (375)
T KOG0633|consen   73 RLSDALAQDKPLTSDNICVGVGSDELIDLIIRCVC----DPGKEKILDCPPTYSMYVVDAAIN---DAEVVKVPLNPDFS  145 (375)
T ss_pred             hhhhhcccCCCCCccceEEecCcHHHHHHHHhhee----cCCccceeecCCcceeEEEEeecC---CceEEEecCCCCcc
Confidence            45556666677888999999999999999999999    677 88999888887666554444   89999999999999


Q ss_pred             CCHHHHHHhcCC--CceEEEEeccccccccccChHHHHHHHHhc-CCcEEEehhhh----cCCCcccCCCCcccEEEecc
Q 040741          184 VNLDELRAAIRP--DTGLISVMAVNNEIGVIQPMEEIGQICKEF-KIPFHTDAAQA----LGKIPVDVEKWNVSLMSLSG  256 (457)
Q Consensus       184 ~d~~~le~~i~~--~t~li~i~~~~~~~G~~~~l~~i~~l~~~~-~v~li~D~a~~----~g~~~~~~~~~~~Di~~~s~  256 (457)
                      +|.+.+.+.++.  ..++++++.++||+|.+...+.|.++.+-- |.++++|+|+-    .++...-++++..-++.-++
T Consensus       146 lnvdai~evl~~ds~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTl  225 (375)
T KOG0633|consen  146 LNVDAIAEVLELDSKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTL  225 (375)
T ss_pred             ccHHHHHHHHhccccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhh
Confidence            999999988753  578999999999999999999998887754 89999999984    23332335566666788899


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +|.||..|  +|+-+......+-+.....-+         ..+...-.++.+|+.-- .+.++..++.+.+.+.++...|
T Consensus       226 SKsfGLAGiRvG~~~~~~~ia~iln~~KaPY---------NiS~~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keL  296 (375)
T KOG0633|consen  226 SKSFGLAGIRVGYGAFPLSIAEILNRAKAPY---------NISVAGSVAALAALSDSNGKKMEDVRDAIVRERERLFKEL  296 (375)
T ss_pred             hhhcCcceeEeecccccHHHHHHHHhccCCc---------cccchhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHh
Confidence            99999777  677776654333222211110         11222222222333211 1236777777777888888888


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccccc---hHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVEG---ESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      .+ ++++.-+  +.+...+++.+.+.+-+.   ..++..+   .|+.++-..                  +++.-.+++|
T Consensus       297 t~-v~~~~~~--~gg~daNFiLi~v~~~~n~~akkly~q~at~~gVvVRfrg------------------se~~c~G~lR  355 (375)
T KOG0633|consen  297 TE-VPFLNDY--PGGSDANFILIEVTGGDNGMAKKLYKQDATKMGVVVRFRG------------------SEEGCKGYLR  355 (375)
T ss_pred             hc-CccccCC--CCcccccEEEEEEcCCCcHHHHHHHHHHHHhcceEEEEcC------------------CccccceeEE
Confidence            88 7765421  112235556666653211   1222222   477665422                  1223348999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~  429 (457)
                      |+++   |+|+-+.+++.++++
T Consensus       356 itvG---t~EentvL~k~~K~~  374 (375)
T KOG0633|consen  356 ITVG---TPEENTVLMKCLKQF  374 (375)
T ss_pred             EEcC---CcccchHHHHHHHhh
Confidence            9998   478888899988875

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.65  E-value=1.3e-13  Score=127.22  Aligned_cols=342  Identities=16%  Similarity=0.234  Sum_probs=216.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCc--E-EEeCChHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKE--I-IFTSGATESNNVSIK  136 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~--i-~~t~g~T~a~~~al~  136 (457)
                      .++-+..+..|++|+...+.+.|  |.|.-+ |..|..+-+..+. .+++..+.|+++|+.  + +=.-||+.||..+..
T Consensus        46 IaSENFts~aVmeAlGS~ltNKYSEGyPG~R-YYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp~SGSPANfavYt  124 (477)
T KOG2467|consen   46 IASENFTSRAVMEALGSCLTNKYSEGYPGAR-YYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQPYSGSPANFAVYT  124 (477)
T ss_pred             eecccchHHHHHHHHhHHhhcccccCCCccc-ccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeeccCCCCchhhHHHh
Confidence            34556788999999999999876  566653 3335555455554 566777889998763  2 233458889999999


Q ss_pred             HhhhhhcCCCCEEEEcCCC---CcchHHHHHHHHhcCcEEEEE-----eCC-CCCCCCHHHHHHhc-CCCceEEEEeccc
Q 040741          137 GVMHFYKDKKRHVITTQTE---HKCVLDSCRHLQQEGFEITYL-----PVG-ADGIVNLDELRAAI-RPDTGLISVMAVN  206 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~---h~~~~~~~~~~~~~G~~v~~v-----~~~-~~~~~d~~~le~~i-~~~t~li~i~~~~  206 (457)
                      +++    +|++.|.=.+.-   |-+....... +.--+.-+++     .++ .+|.+|.|.||+.. .-++++|+...- 
T Consensus       125 all----~Ph~RiMGLDLP~GGHLsHGy~T~~-kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~frPk~iiaG~S-  198 (477)
T KOG2467|consen  125 ALL----KPHERIMGLDLPSGGHLSHGYQTPT-KKISATSIYFESMPYKVDPSTGYIDYDKLEKTATLFRPKLIIAGTS-  198 (477)
T ss_pred             hhc----CCCCeeeeccCCCCCccccccccCC-ceeeeeeeecccCceeeCCCCCceehHHHHHHHHhcCCcEEEeccc-
Confidence            999    898888754433   3333221110 0001122222     344 57899999999854 346777765432 


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccc
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEP  280 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~  280 (457)
                       -.-...+.+++.+||.+.|.++++|-||-.|-+     |-.+.  .+|++..+.|| +-||+| |+++.|+..... .+
T Consensus       199 -aY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFe--y~DiVTTTTHKsLRGPRg-~mIFyRkGvk~~-~~  273 (477)
T KOG2467|consen  199 -AYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFE--YCDIVTTTTHKSLRGPRG-AMIFYRKGVKSI-KP  273 (477)
T ss_pred             -cchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCccc--ccceeeccccccccCCcc-eeEEEeccCCcC-CC
Confidence             244667899999999999999999999965433     32232  48999999999 789996 899888743221 11


Q ss_pred             ccc---CCccc--------cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC
Q 040741          281 LIN---GGGQE--------RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER  348 (457)
Q Consensus       281 ~~~---~~~~~--------~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  348 (457)
                      ...   .+..+        -++..|.+| ..+.++..|++.... ++....++..++++.+.+.|.+  .|.+++.....
T Consensus       274 k~g~~i~ydlE~kINfaVFP~lQGGPHN-htIaalAvALkQa~tpefk~Yq~qV~~Nakala~~l~~--~Gy~lvtgGTD  350 (477)
T KOG2467|consen  274 KQGKEILYDLEDKINFAVFPGLQGGPHN-HTIAALAVALKQAMTPEFKEYQKQVLKNAKALASALIS--RGYKLVTGGTD  350 (477)
T ss_pred             CCCCcceechhhhhhhhccccccCCCCc-chHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH--cCceEecCCcc
Confidence            100   00000        011222333 457777778887765 6889999999999999999999  58888755443


Q ss_pred             cccceEEEEEccccchHHHhccc--CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC----HHHHHHH
Q 040741          349 RYIGNLNLSFAYVEGESLLMGLK--EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT----EAEVDRA  422 (457)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t----~edid~~  422 (457)
                      .+...+.+.-.++++......++  +|.+.-...              .|-......+.||++-...++    ++|++++
T Consensus       351 nHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtv--------------pGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v  416 (477)
T KOG2467|consen  351 NHLVLVDLRPKGVDGARVEKVLELCHIALNKNTV--------------PGDKSALSPGGIRIGTPAMTSRGFGEEDFEKV  416 (477)
T ss_pred             ceEEEEeccccCCchHHHHHHHHHhhhhhcCCcC--------------CCCccccCCCceeccchhhcccCccHHHHHHH
Confidence            33333344445666654443332  222211110              011123344899999877665    6899999


Q ss_pred             HHHHHHHHHHH
Q 040741          423 IELTVKQVEKL  433 (457)
Q Consensus       423 ~~~l~~~~~~~  433 (457)
                      .+.|.++++-.
T Consensus       417 ~~fi~~av~i~  427 (477)
T KOG2467|consen  417 ADFIDRAVKIA  427 (477)
T ss_pred             HHHHHHHHHHH
Confidence            98888887643

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=99.65  E-value=2.7e-13  Score=128.28  Aligned_cols=299  Identities=16%  Similarity=0.137  Sum_probs=205.6

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEE
Q 040741           98 ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYL  176 (457)
Q Consensus        98 ~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v  176 (457)
                      +..+..-+++..+++++|.+-.+.-+--++|.+-+.++++.... +.+++.++++...|+......+ +++..|++++..
T Consensus       117 GrLqaLfefQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~~-k~k~~~~~V~~~vhpqt~~Vl~Tra~~~g~~i~~~  195 (450)
T COG0403         117 GRLEALFEFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRVT-KKKRNKFLVPKDVHPQTLDVLRTRAEGLGIEIEVV  195 (450)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHhh-cCcCceEEecCCCCHHHHHHHHhhcccCceEEEEe
Confidence            44477888999999999999888999999999888888876642 2347899999999999999877 446668888888


Q ss_pred             eCCCCCCCCHHHHHHhcCCCceEEEEeccccccc-cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEec
Q 040741          177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG-VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLS  255 (457)
Q Consensus       177 ~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G-~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s  255 (457)
                      +.+     |+++++++.+.++..+++..|+. .| ...++.+|.+.+|++|.++++=.-.-.-.+--...++|+||++++
T Consensus       196 ~~~-----d~~~l~~~~~~~~~gv~vQyP~~-~G~~~~d~~~l~~~~h~~~al~~v~aDplaL~LL~pPGe~GADIvvG~  269 (450)
T COG0403         196 DAD-----DLDDLESADDGDVFGVLVQYPNT-FGIVEEDLRALIEAAHSAGALVIVAADPLALGLLKPPGEFGADIVVGS  269 (450)
T ss_pred             ccc-----hhhhhhhccccCeEEEEEecCCC-CCccchhHHHHHHHHhhcCCEEEEEechhHhhccCCccccCCceEEec
Confidence            877     88999988334788888888864 67 666799999999999998886543322222234567899999999


Q ss_pred             cccc-----cCCCCceEEEEecCCCccccccccCC-----------------ccccccccCCCChhHHHHH---HHHHH-
Q 040741          256 GHKI-----YGPKGVGALYMRRRPRIRVEPLINGG-----------------GQERGIRSGTLPTPLIVGF---GSACE-  309 (457)
Q Consensus       256 ~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~t~~~~~~~al---~~al~-  309 (457)
                      .+.+     ||.+.+|++.++++...++.-.+.|-                 .|+-+-.-.|.|+....++   .+++- 
T Consensus       270 ~QrfGvPmgfGGPhag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSNICTnQaLlA~~As~y~  349 (450)
T COG0403         270 AQRFGVPMGFGGPHAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSNICTNQALLALAASMYA  349 (450)
T ss_pred             CcccCCCcCCCCcceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchhhhHHHHHHHHHHHHHH
Confidence            9984     45555999999987655544333221                 1111223346665433332   22222 


Q ss_pred             --HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCC
Q 040741          310 --IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSAS  385 (457)
Q Consensus       310 --~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~  385 (457)
                        +..+++.++.++..+++.++.++|++.-.++.+..+   .+...+.+.++......++.+.  .|+-++.-       
T Consensus       350 ~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~---~fFdt~~v~~~~~~~~~l~~~~~~~G~~L~~~-------  419 (450)
T COG0403         350 VYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFD---HFFDTFTVRVPEEVAEALLAAAIAGGINLRRV-------  419 (450)
T ss_pred             HHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEeccc---cceeeEEEecchhHHHHHHHHHHhcCCceeee-------
Confidence              223579999999999999999999961235776643   2233344444321122222222  34433311       


Q ss_pred             CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       386 ~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                                      ..+.+-|++...++++||+.+++.+...
T Consensus       420 ----------------~~~~~~ia~tEt~t~~~i~~l~~~~~~~  447 (450)
T COG0403         420 ----------------DADTVLIALTETTTKEDIDALVAAFGGV  447 (450)
T ss_pred             ----------------cCCceEEEeecccCHHHHHHHHHHHhhh
Confidence                            1147778888889999999999988764

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=99.64  E-value=7.2e-14  Score=140.26  Aligned_cols=258  Identities=13%  Similarity=0.061  Sum_probs=148.8

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +...|++.+|+.+.+......        +.. .....++.++|.+++.. .+.+.|+++||
T Consensus        45 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~--------~~~-~~~~~~la~~l~~~~p~-~~~v~f~~sGs  114 (431)
T PRK06209         45 VDGNEYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCNF--------TRP-SAIELDAAESFLELIDG-ADMVKFCKNGS  114 (431)
T ss_pred             CCCCEEEEccccccchhcCCCCHHHHHHHHHHHHhCcCC--------CCC-CHHHHHHHHHHHHhCCc-cceEEEecCHH
Confidence            345568887543      357899999999998754211        111 12334667788887752 24699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEc--CCCCcchHHHHH--HHHhcCcE------EEEEeCCCCCCCCHHHHHHhcC---C
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITT--QTEHKCVLDSCR--HLQQEGFE------ITYLPVGADGIVNLDELRAAIR---P  195 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~--~~~h~~~~~~~~--~~~~~G~~------v~~v~~~~~~~~d~~~le~~i~---~  195 (457)
                      +|++.|++....+.  .+.+|+..  ...|. ......  .....|..      +..++     .-|+++++++++   .
T Consensus       115 eA~e~AlklAr~~t--gr~~i~~~~~~~~h~-~~~~~~g~~~~~~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~  186 (431)
T PRK06209        115 DATSAAVRLARAYT--GRDLVARCADHPFFS-TDDWFIGTTPMSAGIPASVSALTVTFR-----YNDIASLEALFEDHPG  186 (431)
T ss_pred             HHHHHHHHHHHHHh--CCCeEEEeccCcccc-ccccccccCCCCCCCChhHhccccccC-----CCCHHHHHHHHHhCCC
Confidence            99999999776542  34455553  22221 100000  00000110      11112     228899999885   3


Q ss_pred             CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhc-CCCcccCC---CCcccEEEeccccccC-CCCceEEEE
Q 040741          196 DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL-GKIPVDVE---KWNVSLMSLSGHKIYG-PKGVGALYM  270 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~-g~~~~~~~---~~~~Di~~~s~~K~~g-~~G~G~l~~  270 (457)
                      +...|+++.+....+....+++|.++|++||+++|+|+++.. +.......   ...+|++++  .|.+| ...+|++++
T Consensus       187 ~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~~~gv~PDi~t~--gK~lggG~p~~av~~  264 (431)
T PRK06209        187 RIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQKLYGIVPDLSCF--GKALGNGFAVSALAG  264 (431)
T ss_pred             CEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhHHhCCCcceeee--hhhhcCCcccEEEEE
Confidence            467888887754433333499999999999999999999842 21111111   124687655  49543 223688888


Q ss_pred             ecCCCcc--ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          271 RRRPRIR--VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       271 ~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      +++..+.  +........... ....++++..+++..++++.++++  ...++.+++.+++++.|++
T Consensus       265 ~~~i~~~~~~~~~~~~~~~~~-~~T~~~np~~~aaa~a~l~~i~~~--~~~~~~~~~g~~l~~~L~~  328 (431)
T PRK06209        265 KREYMELGGLEHTDRERVFLL-STTHGAETHALAAAIATMAIYRDE--DVIERLHEQGAKLAAGVNE  328 (431)
T ss_pred             HHHHHhhhcccccCCCCceee-ccCCCCCHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHH
Confidence            8765543  111000000000 011244567788888888888763  4566666666666666544

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.64  E-value=5e-14  Score=139.78  Aligned_cols=310  Identities=14%  Similarity=0.132  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ....++++..|+.+|++. ..+.++|.|.||..++.+++    .+||.||+++.+|+|...++-.+   |+.++++....
T Consensus        70 G~i~eAqe~aA~~fgAd~-tyFvvNGTS~ank~vi~a~~----~~GD~VLvdRN~HKSi~~glila---Ga~Pvyl~p~~  141 (557)
T COG1982          70 GPIKEAQELAARVFGADH-TYFVVNGTSTANKAVINAVL----TPGDKVLVDRNCHKSIHHGLILA---GATPVYLEPSR  141 (557)
T ss_pred             ccHHHHHHHHHHHhCCCc-eEEEECCccHHHHHHHHhhc----CCCCEEEecCCccHHHHHHHHHc---CCceEEecCCC
Confidence            478899999999999875 37888888889999999999    89999999999999999886555   99999997753


Q ss_pred             C------CCCCHHHHHHhcCCC--c-eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCC-----CcccCCC
Q 040741          181 D------GIVNLDELRAAIRPD--T-GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK-----IPVDVEK  246 (457)
Q Consensus       181 ~------~~~d~~~le~~i~~~--t-~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~-----~~~~~~~  246 (457)
                      +      |.++.+.+++++.++  . +++++.++ +..|+++++++|.+.++++++++..|++|.+-.     .+..-..
T Consensus       142 np~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~  220 (557)
T COG1982         142 NPLYGIIGGIPLETFKEALLAHPDAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALN  220 (557)
T ss_pred             CccccccCCCCHHHHHHHHHhChhhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhh
Confidence            3      478999999877543  3 66777766 448999999999999999999999999997521     1221112


Q ss_pred             CcccEEEeccccccC-CCCceEEEEecC-CC--ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh----hHHH
Q 040741          247 WNVSLMSLSGHKIYG-PKGVGALYMRRR-PR--IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE----MDYD  318 (457)
Q Consensus       247 ~~~Di~~~s~~K~~g-~~G~G~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~----~~~~  318 (457)
                      .+.|+++-|.||..| ..-...+.+++. ..  +++...+.      -+.+++|+.+.++++..|-......    ++..
T Consensus       221 ~~~~~~tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~------~h~STSPsY~l~ASlD~Ar~~~~~~G~~l~~~~  294 (557)
T COG1982         221 GGADFVTQSTHKLLAALSQASMIHVKDGRAVNHERFNEALM------MHQSTSPSYPLMASLDVARMQEGNAGRELWQEV  294 (557)
T ss_pred             cCceEEEechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHH------HHccCCchHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            478999999999554 443577777752 11  12222111      1234577777777777643333222    3344


Q ss_pred             HHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cc----------------cceEEEEE--ccccchHHHhcc--cCeEec
Q 040741          319 HKRITALHDRLLNGIKEKLDGVVVNGSMER--RY----------------IGNLNLSF--AYVEGESLLMGL--KEVAVS  376 (457)
Q Consensus       319 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~----------------~~~~~~~~--~~~~~~~~~~~l--~~i~~~  376 (457)
                      .++.-+.++++++.+.+ ++++.+.+++..  ..                +.-+.+..  .++.+..+...|  +++.. 
T Consensus       295 ~~~~i~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~-  372 (557)
T COG1982         295 IDEAIDFRKALRRLINE-IGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIP-  372 (557)
T ss_pred             HHHHHHHHHHHHHHHHh-cCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCee-
Confidence            67778888888888888 888888765431  00                11111111  123344444444  23222 


Q ss_pred             ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCccc
Q 040741          377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQ  451 (457)
Q Consensus       377 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  451 (457)
                                            .+.+...+-+.++...  .+-..+++.|.++.++..+-.|++++..+.-+...
T Consensus       373 ----------------------e~~~d~~~lll~~~~~--gk~~~lv~~L~~f~r~~d~d~~l~~vlp~~~~~~~  423 (557)
T COG1982         373 ----------------------EETGDYSNLLLFSPGI--GKWQTLVDRLLEFKRRYDDDAPLKQVLPSLYDQYP  423 (557)
T ss_pred             ----------------------eecCCceeeEEeeecc--chHHHHHHHHHHHHHhhhccchHhhhchhhhhccc
Confidence                                  2222234444444332  67777778888888888888888888887766655

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=99.60  E-value=3.6e-13  Score=126.56  Aligned_cols=248  Identities=15%  Similarity=0.157  Sum_probs=161.0

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccch-hhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHHHHhhhhhcCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLF-GWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      +-.|++.+++.+.+...       .|.. ++-+.+ ..++++.+.+.++- .++.|.|+++||+|++.|++..+++...+
T Consensus        72 hanpev~ral~~q~~k~-------~hs~~~~~t~e-av~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~~~~  143 (433)
T KOG1401|consen   72 HANPEVARALAEQAKKL-------GHSSNGYFTLE-AVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFTGKK  143 (433)
T ss_pred             CCCHHHHHHHHHHHhhh-------eeccCccccHH-HHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhhccc
Confidence            56799999999998764       1222 222333 66778888888854 34569999999999999999887664322


Q ss_pred             C----CEEEE-cCCCCcchHHHHHHHHhcCc-------EEEEEeCCCCCCCCHHHHHHhcCCCc---eEEEEeccccccc
Q 040741          146 K----RHVIT-TQTEHKCVLDSCRHLQQEGF-------EITYLPVGADGIVNLDELRAAIRPDT---GLISVMAVNNEIG  210 (457)
Q Consensus       146 g----~~vi~-~~~~h~~~~~~~~~~~~~G~-------~v~~v~~~~~~~~d~~~le~~i~~~t---~li~i~~~~~~~G  210 (457)
                      .    ..+|. ....|.-...+.......+.       .+.++...   .-|+.++++.+..++   ..|+++.+....|
T Consensus       144 ~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~v~~~~---ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG  220 (433)
T KOG1401|consen  144 HPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAE---YNDSTALEKLFESHKGEIAAVIVEPIQGAGG  220 (433)
T ss_pred             CCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCceeecc---cCCHHHHHHHHHhCCCceEEEEEecccCCCC
Confidence            1    23555 44556555555544322221       11222222   237899999997665   7888999987777


Q ss_pred             cccC----hHHHHHHHHhcCCcEEEehhhhc-CCCcc----cCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccc
Q 040741          211 VIQP----MEEIGQICKEFKIPFHTDAAQAL-GKIPV----DVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEP  280 (457)
Q Consensus       211 ~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~~~----~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~  280 (457)
                      .+..    +..|..+|+++|+++|.|+++.. |....    ..-...+||+++.  | +.|.-.+|+..++++..+.+.+
T Consensus       221 ~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~a--K~L~gGlPigA~~v~~kV~~~i~~  298 (433)
T KOG1401|consen  221 IIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVA--KPLGGGLPIGATGVRDKVAEMISP  298 (433)
T ss_pred             cccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHHHhCcCCcceeeh--hhccCCceeEEEeehHHHHhhcCC
Confidence            6643    77899999999999999999873 32211    1111247888777  9 4444459999999987777654


Q ss_pred             ccc---CCccccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhh
Q 040741          281 LIN---GGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       281 ~~~---~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      --+   |+..       ..++..+.+...+++.+.+.  +.+..+..+.+++.+.+.+.+
T Consensus       299 ~~~l~hg~Tf-------~gnpLacsa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~  351 (433)
T KOG1401|consen  299 GDHLYHGGTF-------SGNPLACSAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKK  351 (433)
T ss_pred             CCccccCccc-------CCChhhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            433   3322       34556666666677766652  455555556666666666666

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=99.60  E-value=4.2e-13  Score=142.14  Aligned_cols=334  Identities=13%  Similarity=0.055  Sum_probs=194.9

Q ss_pred             EEecCCCC------C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHH
Q 040741           59 LYLDMQAT------T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATES  130 (457)
Q Consensus        59 i~l~~~~~------~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a  130 (457)
                      -|||..+.      + ...|++.+|+.+.+.... ...    ..+. ..+...++.++|.+..+.+ .+.++|+++|++|
T Consensus       366 ~ylD~~sg~w~~~lG~h~~p~I~~Ai~~Qa~rl~-hv~----~~~~-~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeA  439 (817)
T PLN02974        366 QQFDACASWWTQGPDPTLQPELARAVAYAAGRYG-HVM----FPEN-VHEPALRAAELLLGGPGKGWASRVFFSDNGSTA  439 (817)
T ss_pred             eEEEcchhHHHhCCCcCCCHHHHHHHHHHHhhCC-ccc----cCcc-CCHHHHHHHHHHHhccCCCCCCEEEECCchHHH
Confidence            47776542      3 358999999999987631 111    0011 1245566777777755422 3469999999999


Q ss_pred             HHHHHHHhhh-hhc---C-------------CCCEEEEcC-CCCcchHHHHHHHHhc----Cc-E------EEEEeCCC-
Q 040741          131 NNVSIKGVMH-FYK---D-------------KKRHVITTQ-TEHKCVLDSCRHLQQE----GF-E------ITYLPVGA-  180 (457)
Q Consensus       131 ~~~al~~~~~-~~~---~-------------~g~~vi~~~-~~h~~~~~~~~~~~~~----G~-~------v~~v~~~~-  180 (457)
                      ++.|++-... ++.   .             .+.+||... .+|.....+.......    .+ .      ..+++.+. 
T Consensus       440 vE~AlKmA~r~y~~~~G~~~~~~~~~~~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~  519 (817)
T PLN02974        440 IEVALKMAFRKFIVDHGFLENSGNEKRGGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTV  519 (817)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccccccccccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCcc
Confidence            9999997754 321   1             244566544 4566666655443210    00 0      01111100 


Q ss_pred             -------------C------C----------CCC------------HHHHHHhcC--------CCceEEEEecc-ccccc
Q 040741          181 -------------D------G----------IVN------------LDELRAAIR--------PDTGLISVMAV-NNEIG  210 (457)
Q Consensus       181 -------------~------~----------~~d------------~~~le~~i~--------~~t~li~i~~~-~~~~G  210 (457)
                                   .      +          ..|            .+.+++.|.        ++...|+++.+ +...|
T Consensus       520 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGG  599 (817)
T PLN02974        520 GMRNGRWNISLPEGFSSGLEGEETTWESRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGG  599 (817)
T ss_pred             ccccccccccCCccccccccccccccccccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCC
Confidence                         0      0          000            245666664        34678888885 67678


Q ss_pred             cccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccC--CCCcccEEEecccc-ccCC-CCceEEEEecCCCcccc
Q 040741          211 VIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDV--EKWNVSLMSLSGHK-IYGP-KGVGALYMRRRPRIRVE  279 (457)
Q Consensus       211 ~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~--~~~~~Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~  279 (457)
                      ++.|    ++++.++|++||+++|.|+++. +|..  .+..  ....+|+++++  | +.|. -.+|+++++++..+.+.
T Consensus       600 mi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~PDIi~~g--KgLtgG~~Plaa~l~~~~I~~~f~  677 (817)
T PLN02974        600 MLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCKPDIACYA--KLLTGGLVPLAATLATEEVFEAFR  677 (817)
T ss_pred             cccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCCCCEEeec--ccccCCCCccEEEEEcHHHHHhhc
Confidence            8866    8999999999999999999986 3322  1111  12348999888  9 4433 35899999987665543


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH----hhcCCCeEEeCCCCCcccce
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGI----KEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ..........+. ..+.++..+++..++++.++++  .....+...++.+++.+.|    .+ +|.+.=+    ...+.+
T Consensus       678 ~~~~~~~~~hg~-Ty~gnpl~cAaala~L~~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~-~p~V~~V----Rg~Gl~  751 (817)
T PLN02974        678 GPSKLDALLHGH-SYTAHPMGCAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISS-LPNVERV----VSLGTV  751 (817)
T ss_pred             cccccCCcccCC-CCCcCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCeeEE----EeeeeE
Confidence            110000000011 2256677788888889888763  4455666666666666555    33 3332111    112444


Q ss_pred             EEEEEccccc---------hHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          354 LNLSFAYVEG---------ESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       354 ~~~~~~~~~~---------~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      +.+.+.....         ..+...+   +|+.+++.                        ++.|++.++..++++++++
T Consensus       752 ~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~r~~------------------------Gnvi~l~pP~~i~~e~l~~  807 (817)
T PLN02974        752 LALELDAEGSGSGYSSLYARSVVRRLRREDGIYARPL------------------------GNVVYLMCGPTTSPETCTR  807 (817)
T ss_pred             EEEEEecCCcccccchHHHHHHHHHHHHhCCEEEEec------------------------CCEEEEeCCCCCCHHHHHH
Confidence            4555532110         1122211   35555431                        2689999999999999999


Q ss_pred             HHHHHHHHH
Q 040741          422 AIELTVKQV  430 (457)
Q Consensus       422 ~~~~l~~~~  430 (457)
                      +++.|.+.+
T Consensus       808 ~~~~l~~~~  816 (817)
T PLN02974        808 LLRKVYRRL  816 (817)
T ss_pred             HHHHHHHHh
Confidence            999998765

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.59  E-value=4.8e-13  Score=125.20  Aligned_cols=325  Identities=16%  Similarity=0.138  Sum_probs=204.3

Q ss_pred             cCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH-hCCC-----CCc--EEEeC
Q 040741           54 IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL-IGAS-----PKE--IIFTS  125 (457)
Q Consensus        54 ~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~-~g~~-----~~~--i~~t~  125 (457)
                      +.+==+|-|-.+.+|+-+.|.+|-.....+.  .+.  .|    -.-+....+.+.+.++ ||.+     .+.  .+=|.
T Consensus        30 NLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~~--~~k--~Y----l~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~  101 (396)
T COG1448          30 NLGIGVYKDEDGKTPVLRAVKKAEKRLLEQE--KTK--NY----LPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTL  101 (396)
T ss_pred             eeeeeeeeCCCCCcchhHHHHHHHHHhhccc--ccc--cc----CCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecC
Confidence            3444478888888898888888877666543  111  11    1123455555666665 4533     111  56788


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC---CCceEE
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR---PDTGLI  200 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~---~~t~li  200 (457)
                      |||.|+.++...+..+  .+...|.+++++++.........   |+++...+--  .+..+|.+.+.+.+.   ++..++
T Consensus       102 GGTGAL~~~A~fl~~~--~~~~~vwis~PtW~NH~~If~~a---Gl~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvL  176 (396)
T COG1448         102 GGTGALRVAADFLARF--FPDATVWISDPTWPNHKAIFEAA---GLEVETYPYYDAETKGLDFDGMLADLKTAPEGSVVL  176 (396)
T ss_pred             CcchHHHHHHHHHHHh--CCCceEEeCCCCcHhHHHHHHhc---CCceeeeeccccccccccHHHHHHHHHhCCCCCEEE
Confidence            9999999999888765  46677999998887776665555   9999766542  334588888777664   456677


Q ss_pred             EEeccccccccccC---hHHHHHHHHhcCCcEEEehhh-hcCCCcccCCCC--------cc-cEEEeccccccCCCC--c
Q 040741          201 SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQ-ALGKIPVDVEKW--------NV-SLMSLSGHKIYGPKG--V  265 (457)
Q Consensus       201 ~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~-~~g~~~~~~~~~--------~~-Di~~~s~~K~~g~~G--~  265 (457)
                      .-...|||||.-..   |++|.++.++.+++.+.|-|| +++.- ++-+.+        +. -+++.|++|.||.-|  +
T Consensus       177 LH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~G-leeDa~~lR~~a~~~~~~lva~S~SKnfgLYgERV  255 (396)
T COG1448         177 LHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADG-LEEDAYALRLFAEVGPELLVASSFSKNFGLYGERV  255 (396)
T ss_pred             EecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccc-hHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhhcc
Confidence            77889999998765   889999999999999999887 33322 221111        22 478889999766433  5


Q ss_pred             eEEEEecCC---CccccccccCCccccccccCCCChhHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          266 GALYMRRRP---RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC------EIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       266 G~l~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      |++.+-.+-   ..++...+..  ..| -.+..||..+..-....|      ...++++..+++++++++..|.+.|++.
T Consensus       256 Ga~~vva~~~~~a~~v~sqlk~--~iR-~~ySnPP~~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~  332 (396)
T COG1448         256 GALSVVAEDAEEADRVLSQLKA--IIR-TNYSNPPAHGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKAL  332 (396)
T ss_pred             ceeEEEeCCHHHHHHHHHHHHH--HHH-hccCCCchhhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            555443221   1122111110  011 122344444443333333      1234468899999999999999999872


Q ss_pred             CCC--eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC
Q 040741          337 LDG--VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR  412 (457)
Q Consensus       337 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~  412 (457)
                      .+.  +..+..   + .+  .|++.+.+.+++....  .+|.+...                         +  ||++..
T Consensus       333 ~~~~~f~~i~~---Q-~G--MFsy~Gls~~QV~rLree~~IY~v~s-------------------------G--Ri~vaG  379 (396)
T COG1448         333 GAPRNFDFIIS---Q-RG--MFSYTGLSPEQVDRLREEFGIYLVAS-------------------------G--RINVAG  379 (396)
T ss_pred             CCCcccchHhh---c-Cc--eeecCCCCHHHHHHHHHhccEEEecC-------------------------C--eeeecc
Confidence            222  333222   1 23  3566677776655443  46665432                         2  888877


Q ss_pred             CCCHHHHHHHHHHHHHH
Q 040741          413 FTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       413 ~~t~edid~~~~~l~~~  429 (457)
                      . +...|+++++++.++
T Consensus       380 l-~~~ni~~va~ai~~v  395 (396)
T COG1448         380 L-NTSNIDYVAKAIAAV  395 (396)
T ss_pred             C-ChhhHHHHHHHHHhh
Confidence            4 478999999999875

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=99.58  E-value=1.2e-13  Score=129.76  Aligned_cols=309  Identities=18%  Similarity=0.216  Sum_probs=197.3

Q ss_pred             HHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhhhh-hcC---------CCCEEEEcCCCCcchHHHHHHHHhcC
Q 040741          102 AVETARSQIADLIGASPK-EIIFTSGATESNNVSIKGVMHF-YKD---------KKRHVITTQTEHKCVLDSCRHLQQEG  170 (457)
Q Consensus       102 ~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~~~~-~~~---------~g~~vi~~~~~h~~~~~~~~~~~~~G  170 (457)
                      .-.++.....+..|.+.. ..+|++||+-++.-++.....- +++         |.-.+.+++.+|+|+..++..++..-
T Consensus       142 mE~~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~lilFtSeesHYSi~kaAa~lg~gt  221 (510)
T KOG0629|consen  142 MEEEVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPPLILFTSEESHYSIKKAAAFLGLGT  221 (510)
T ss_pred             ehHHHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCcEEEEecccchhhHHHHHHHhccCC
Confidence            344566777888898764 7999999999888877765411 111         11234677788999999999884333


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCC---C---ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRP---D---TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-  243 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~---~---t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-  243 (457)
                      ..++.|+.+..|.+++++||+.|-+   +   +-+|.++...+..|.+.||+.|+++|++|++++|+|+|.+.|.+-.. 
T Consensus       222 d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k  301 (510)
T KOG0629|consen  222 DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRK  301 (510)
T ss_pred             ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChh
Confidence            7899999999999999999998853   2   57888888888899999999999999999999999999987654211 


Q ss_pred             ----CCC-CcccEEEeccccccC-CCCceEEEEecCC-CccccccccCCc-cc------------cccccCCC-Chh-HH
Q 040741          244 ----VEK-WNVSLMSLSGHKIYG-PKGVGALYMRRRP-RIRVEPLINGGG-QE------------RGIRSGTL-PTP-LI  301 (457)
Q Consensus       244 ----~~~-~~~Di~~~s~~K~~g-~~G~G~l~~~~~~-~~~~~~~~~~~~-~~------------~~~~~~t~-~~~-~~  301 (457)
                          +.. -.+|.++.+.||+.| |--|++++.+.+- +.+.......+- +.            ....-|.. +.. ..
T Consensus       302 ~R~kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK~iQCGRh~D~FKlW  381 (510)
T KOG0629|consen  302 HRHKLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDKAIQCGRHVDVFKLW  381 (510)
T ss_pred             hHhhccCccccCceeecHHHhhcCcchhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccchhhcCccccHHHHH
Confidence                111 147899999999655 5568888887753 222221111110 00            01111211 111 11


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc--------hHHHhcccCe
Q 040741          302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG--------ESLLMGLKEV  373 (457)
Q Consensus       302 ~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~i  373 (457)
                      ..+.+   -..+++++..+++-++++|+.+.|++ .+++..+-..+.   -.++++|..+..        .+...+|..|
T Consensus       382 lmwka---KG~~Gfe~~v~k~~~lA~yl~~~lre-r~~~~~l~~~~p---e~~nv~fw~vp~~lR~~~~~~e~~~rL~kV  454 (510)
T KOG0629|consen  382 LMWKA---KGTQGFEAQVDKCLRLAEYLYDRLRE-REGFEMLFELEP---EHVNVCFWYVPPSLRGWQENPERDSRLVKV  454 (510)
T ss_pred             HHHHh---cccccHHHHHHHHHHHHHHHHHHHHh-cccceehhcCCC---ceEEEeeccCchHhccCcccchhhhHHHhh
Confidence            11110   01135899999999999999999999 778666544332   233444432211        1222222211


Q ss_pred             EecccCccCCCCCChhHHH-------HHcCCCc-cCCCCeEEEecCCC-CCHHHHHHHHHHHHHHH
Q 040741          374 AVSSGSACTSASLEPSYVL-------RALGVDE-DMAHTSIRFGIGRF-TTEAEVDRAIELTVKQV  430 (457)
Q Consensus       374 ~~~~g~~~~~~~~~~~~~l-------~~~g~~~-~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~  430 (457)
                      +             |+..-       ..+|+.+ ....+.+|+.++.. .+.+|+|.+++.|...-
T Consensus       455 a-------------PkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlg  507 (510)
T KOG0629|consen  455 A-------------PKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLG  507 (510)
T ss_pred             C-------------cHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhc
Confidence            1             11100       0122322 22346889888764 67899999999887654

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=99.57  E-value=6.5e-13  Score=129.18  Aligned_cols=258  Identities=17%  Similarity=0.233  Sum_probs=161.4

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.      +.-+|++.+++.+.+....-....     + ...+...++.++|.+.++-..+.++|++||++
T Consensus        14 dG~~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~~~~~~~-----~-~~~~~~~~la~~L~~~~p~~~~~v~f~~sGse   87 (339)
T PF00202_consen   14 DGREYLDFMSGYGSVNLGHNHPEIAEAIAEQANKLNYVSFS-----G-FTHPEAAELAEKLAELFPGGLDRVFFANSGSE   87 (339)
T ss_dssp             TSEEEEESSHHHHTTTT-BT-HHHHHHHHHHHHHCSSCSTT-----T-SEEHHHHHHHHHHHHHSSTTEEEEEEESSHHH
T ss_pred             CCCEEEECCCCccceecCCCccccchhHHHHhhhccccccc-----c-eeccchhhhhhhhhhccccccceeeeccCchH
Confidence            44568887532      356799999999998764211101     1 11256778888999998544457999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEEcCCC-CcchHHHHHHH----HhcC-----cEEEEEeCCCCCCCCHHH-------
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVITTQTE-HKCVLDSCRHL----QQEG-----FEITYLPVGADGIVNLDE-------  188 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~~~~~-h~~~~~~~~~~----~~~G-----~~v~~v~~~~~~~~d~~~-------  188 (457)
                      |++.|++....++.    ..+.+|+..... |.....+....    .+.+     ..+..+|.+     |+..       
T Consensus        88 Ave~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~-----~~~~~~~~~~~  162 (339)
T PF00202_consen   88 AVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFP-----DPAADEEEQAC  162 (339)
T ss_dssp             HHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETT-----CHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCC-----ccchhhhHHHH
Confidence            99999998772211    345677766555 44444443321    0111     234666665     3333       


Q ss_pred             ---HHH----hcCCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cc--cCCCCcccEE
Q 040741          189 ---LRA----AIRPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PV--DVEKWNVSLM  252 (457)
Q Consensus       189 ---le~----~i~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~--~~~~~~~Di~  252 (457)
                         +++    .-.++...|+++.+....|...+    +++|.++|++||+++|+|++++. |..  .+  ......+|++
T Consensus       163 ~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv  242 (339)
T PF00202_consen  163 LNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIV  242 (339)
T ss_dssp             HHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEE
T ss_pred             HHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccccCCccceecccccCccc
Confidence               222    22456789999999888887754    89999999999999999999973 322  12  1122357999


Q ss_pred             Eecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040741          253 SLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       253 ~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~  331 (457)
                      +++  | +.|...+|+++++++..+.+.+...+..       ...++..+++..+.++.+++  +.+.++.+++.+++++
T Consensus       243 ~~g--K~l~gG~p~sav~~~~~i~~~~~~~~~~~T-------~~g~p~~~aaa~~~l~~~~~--~~~~~~~~~~g~~l~~  311 (339)
T PF00202_consen  243 TFG--KGLGGGLPISAVLGSEEIMEAFQPGSHGST-------FGGNPLSCAAALATLEILEE--EDLLERVRELGERLRE  311 (339)
T ss_dssp             EEE--GGGGTTSSEEEEEEEHHHHTTSCTTSSTCT-------TTT-HHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred             ccc--cchhhhhhcccccccchhhccccccccccc-------cccchHhhhhhhhHHHhhcc--HHHHHHHHHHHHHHHH
Confidence            887  9 4444568999999876665543332211       13456677777778888776  3444555555555555


Q ss_pred             HHhh
Q 040741          332 GIKE  335 (457)
Q Consensus       332 ~l~~  335 (457)
                      .|++
T Consensus       312 ~L~~  315 (339)
T PF00202_consen  312 GLRE  315 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=99.57  E-value=2e-15  Score=142.19  Aligned_cols=252  Identities=16%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           65 ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        65 ~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      |-.++++++.+++.+....+ .|-...... |.. ...+..+++.++.++|+++  .+++++...|+.+++.++.     
T Consensus        14 GRs~l~~~a~~a~~~~a~~Y-~nLE~dl~~-G~R-g~R~~~v~~ll~~ltgAea--A~VvNnnaAAv~L~l~~la-----   83 (367)
T PF03841_consen   14 GRSPLSEEAIEAVAEVASGY-SNLEYDLET-GKR-GSRYAHVEELLCELTGAEA--ALVVNNNAAAVLLALNTLA-----   83 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccc-ccccccccc-ccc-ccccccccccccccccccc--ccccccccccccccccccc-----
Confidence            56688999999998876542 111000000 111 1345678889999999976  8888888889999988887     


Q ss_pred             CCCEEEEcCCCCcchHHHHH---HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccc--ccc--ccChHH
Q 040741          145 KKRHVITTQTEHKCVLDSCR---HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGV--IQPMEE  217 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~---~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~--~G~--~~~l~~  217 (457)
                      ++.+||++..+-.-+..+.+   .+...|++++.+...  ....+++++++|+++|.++.-.|.+|.  .|-  -.++++
T Consensus        84 ~~~EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGtt--N~t~~~Dye~AI~e~Ta~ll~Vh~Sn~~i~GFt~~~~~~e  161 (367)
T PF03841_consen   84 KGKEVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTT--NRTHLSDYEKAITENTAALLKVHTSNFRIQGFTGEVSLEE  161 (367)
T ss_dssp             -------------------------------------------------------------------------------H
T ss_pred             cccccccccccccccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccHHH
Confidence            57789998887666655544   335568888877654  234679999999999999988887776  342  357999


Q ss_pred             HHHHHHhcCCcEEEehhhhc---------CCCcc--cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc
Q 040741          218 IGQICKEFKIPFHTDAAQAL---------GKIPV--DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~---------g~~~~--~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      +++++++|++++++|...+.         +..|-  ..-..|+|+++||+.|++|.+-.|+++++++++++++..-.+. 
T Consensus       162 l~~la~~~~lp~i~DlgsG~l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQaGiI~Gkk~lI~~lk~~pl~R-  240 (367)
T PF03841_consen  162 LAELAKEHGLPVIVDLGSGLLVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQAGIIVGKKELIEKLKKHPLGR-  240 (367)
T ss_dssp             HHHHHHHHT--EEEE-TTHHHHHHHTT----------CCCCT-SEEEEETTSSSSS-S-EEEEEEHHHHHHHHHHHHTT-
T ss_pred             HHHHHhhcCCcEEEECCCCCCcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCCeEEEEeCHHHHHHHhhCCCcc-
Confidence            99999999999999998742         11111  2234589999999999655333799999999888776443221 


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHH------h------hHHHHHHHHHHHHHHHHHHhh
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKK------E------MDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~------~------~~~~~~~~~~~~~~l~~~l~~  335 (457)
                            .-...-..++++.++++...+      +      +....+.+++.++++...|..
T Consensus       241 ------alrvdK~tla~L~atL~~Y~~~~~~~~~ip~l~ml~~~~~~L~~rA~~l~~~l~~  295 (367)
T PF03841_consen  241 ------ALRVDKLTLAALEATLRLYLDPDKAKEEIPTLRMLTQSLEELRARAERLAAQLKA  295 (367)
T ss_dssp             ------T-B--HHHHHHHHHHHHH-------------------------------------
T ss_pred             ------eEeeCHHHHHHHHHHHHHHHHhhcccccccccccccccccccccccccccccccc
Confidence                  124556678888888876542      0      233344455555555555554

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.56  E-value=4.6e-13  Score=125.57  Aligned_cols=303  Identities=16%  Similarity=0.197  Sum_probs=157.2

Q ss_pred             hHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh----------hhhcCCCCEEEEcCCCCcchHHHHHHHH
Q 040741           98 ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM----------HFYKDKKRHVITTQTEHKCVLDSCRHLQ  167 (457)
Q Consensus        98 ~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~----------~~~~~~g~~vi~~~~~h~~~~~~~~~~~  167 (457)
                      +..+.+.++|+..++++|+++++++...+++..+..-+.+..          ++.+.+.-++|++.+.|--....++.+ 
T Consensus        66 G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~-  144 (425)
T PF12897_consen   66 GGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHF-  144 (425)
T ss_dssp             S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHC-
T ss_pred             CccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhh-
Confidence            445789999999999999999999988877755432222211          122234567899998887666665555 


Q ss_pred             hcCcEEEEEeCCCCCCCCHHHHHHhcC--CCce-EEEEeccccccccccChHHHHHHH----HhcCCcEEEehhhhcCCC
Q 040741          168 QEGFEITYLPVGADGIVNLDELRAAIR--PDTG-LISVMAVNNEIGVIQPMEEIGQIC----KEFKIPFHTDAAQALGKI  240 (457)
Q Consensus       168 ~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~-li~i~~~~~~~G~~~~l~~i~~l~----~~~~v~li~D~a~~~g~~  240 (457)
                        |++.+.||.+++| +|++.+|+++.  +..+ +-|++.-+||+|..++-+-+.+++    ...+-.|++|.||++-.+
T Consensus       145 --Giemi~VpM~~dG-PDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDNAY~vHhL  221 (425)
T PF12897_consen  145 --GIEMIPVPMTEDG-PDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDNAYAVHHL  221 (425)
T ss_dssp             --T-EEEEEEEETTE-E-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-TTTT-BS
T ss_pred             --CcEEEecCCCCCC-CCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeecCceEeec
Confidence              9999999999887 69999999984  4444 568899999999999965555554    346999999999997655


Q ss_pred             cccCC---------------CCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHH
Q 040741          241 PVDVE---------------KWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGF  304 (457)
Q Consensus       241 ~~~~~---------------~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al  304 (457)
                      .-+..               ..+.-++..|.+| .|...|++++..+++.++.+...+...         +..+--+-.+
T Consensus       222 ~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~Nl~~~~~~~~~~---------tIgpdKvNQL  292 (425)
T PF12897_consen  222 YDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEANLAWIKKHLSVQ---------TIGPDKVNQL  292 (425)
T ss_dssp             SSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHHHHHHHHHHHHH----------S---HHHHH
T ss_pred             cccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHHHHHHHHHhcCc---------eeCccHHHHH
Confidence            21110               0123367789999 688889999999987766665444211         1111111111


Q ss_pred             HHH--H---H-HHHHhhHHHHHHHHHHHHHHHHHHhhcCC---C-eEEeCCCCCcccceEEEEEccccc--hHHHhcc--
Q 040741          305 GSA--C---E-IAKKEMDYDHKRITALHDRLLNGIKEKLD---G-VVVNGSMERRYIGNLNLSFAYVEG--ESLLMGL--  370 (457)
Q Consensus       305 ~~a--l---~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l--  370 (457)
                      ..+  +   + -+...+++..+-++-..+.+.+.|++++.   + ..+.. |.   +++ ++++...++  ..+....  
T Consensus       293 RHvrff~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~~ia~Wt~-P~---GGY-FIsld~~~G~AkrvV~lake  367 (425)
T PF12897_consen  293 RHVRFFKDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGLGIASWTK-PK---GGY-FISLDVLDGTAKRVVELAKE  367 (425)
T ss_dssp             HHHHHHHSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGGTSEEE----S---BSS--EEEEESTT-HHHHHHHHHH
T ss_pred             HHHHHhcChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCCCeeEecC-CC---Cce-EEEEecCCChHHHHHHHHHH
Confidence            111  1   1 11112233333333333333333333222   2 33333 32   222 345543333  2232222  


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .||.+.+-.+..|           +|.+  ...+-|||+++. -+.||++.+++.+.-+++.
T Consensus       368 AGV~LT~AGAtfP-----------yg~D--P~D~nIRiAPS~-P~leel~~Am~~~~~cv~l  415 (425)
T PF12897_consen  368 AGVALTPAGATFP-----------YGKD--PRDSNIRIAPSY-PSLEELETAMDVFATCVKL  415 (425)
T ss_dssp             TTEE---TTTTSG-----------GG----TTS-EEEE--SS-S-HHHHHHHHHHHHHHHHH
T ss_pred             hCceeCCCCCCCC-----------CCCC--CCCCcEEecCCC-CCHHHHHHHHHHHHHHHHH
Confidence            6888887544443           2322  334899999987 4589999999999888764

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=99.56  E-value=2.4e-13  Score=129.29  Aligned_cols=240  Identities=17%  Similarity=0.182  Sum_probs=165.5

Q ss_pred             cccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           50 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      +.+.+..+.+..-+.+....++++++++.+.+.....- .  .+.-..........+.+.+....|++  .++++++.+.
T Consensus        20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~~v~L-e--~~l~~g~~~~R~~~~~~~~~~~~~ae--a~~ivnnn~a   94 (395)
T COG1921          20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRAPVEL-E--TDLKTGKRGARLTELAELLCGLTGAE--AAAIVNNNAA   94 (395)
T ss_pred             hhhhhhhhhheeccCCCccCCHHHHHHHHHHhccccee-e--eecccchhhHHHHHHHHHHhcccchh--heeeECCcHH
Confidence            44555555566666778899999999999988754321 0  11101111122334444444444544  4899999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcC-----CCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQ-----TEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~-----~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      |+.+++.++.    +++ ++++..     ..|+.+.+.++.+   |.+++.+.  ..+.....+++.+|.++|+++.-.+
T Consensus        95 AVll~~~al~----~~~-EvVis~g~lV~gg~~~v~d~~~~a---G~~l~EvG--~tn~t~~~d~~~AIne~ta~llkV~  164 (395)
T COG1921          95 AVLLTLNALA----EGK-EVVVSRGELVEGGAFRVPDIIRLA---GAKLVEVG--TTNRTHLKDYELAINENTALLLKVH  164 (395)
T ss_pred             HHHHHHhhhc----cCC-eEEEEccccccCCCCChhHHHHHc---CCEEEEec--ccCcCCHHHHHHHhccCCeeEEEEe
Confidence            9999888887    544 444322     4688888888777   88887775  4455688999999999999888776


Q ss_pred             cccccccc--cChHHHHHHHHhcCCcEEEehhhhcCCC-ccc---CCCCcccEEEeccccccC-CCCceEEEEecCCCcc
Q 040741          205 VNNEIGVI--QPMEEIGQICKEFKIPFHTDAAQALGKI-PVD---VEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIR  277 (457)
Q Consensus       205 ~~~~~G~~--~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~---~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~  277 (457)
                      .+|. |..  .+.++++++||++|+++++|.+.+.-.. ..+   .-..|+|++++|+.|++| |. .|+++++++++++
T Consensus       165 s~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI~~  242 (395)
T COG1921         165 SSNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELIEK  242 (395)
T ss_pred             eccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHHHH
Confidence            6654 533  6788899999999999999999865311 112   224489999999999655 65 7999999988876


Q ss_pred             ccccccCCccccccccCCCChhHHHHHHHHHHHHHH
Q 040741          278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK  313 (457)
Q Consensus       278 ~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~  313 (457)
                      +...-.+.+.       ......++++.+|++....
T Consensus       243 lq~~~l~Ral-------rv~K~tla~l~~aLe~y~~  271 (395)
T COG1921         243 LQSHPLKRAL-------RVDKETLAALEAALELYLQ  271 (395)
T ss_pred             HHhhhhhhhh-------hcCcHhHHHHHHHHHHHcC
Confidence            6544332222       4556778888889987764

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=99.52  E-value=2e-12  Score=120.53  Aligned_cols=277  Identities=17%  Similarity=0.142  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEe---CChHHHHHHHHHHhhhhhcCCCCE
Q 040741           72 RVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFT---SGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        72 ~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t---~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      .|++|+.+.-.+...  ..++..|||.. ...+.+++-.|+.||++.  .++-   .|||.|+.+++.+++    .|||+
T Consensus        28 KVL~Af~~~~vs~~h--f~~tTGYGY~D-~GRd~le~iyA~vfgaE~--ALVRpq~vSGTHAi~~~Lfg~L----rpGD~   98 (403)
T PF06838_consen   28 KVLKAFQENRVSDSH--FAGTTGYGYDD-IGRDKLERIYADVFGAED--ALVRPQFVSGTHAIALALFGVL----RPGDE   98 (403)
T ss_dssp             HHHHHHHHTT--GGG--CS---TT-TT--HHHHHHHHHHHHHCT-SE--EEEETTS-SHHHHHHHHHHHH------TT-E
T ss_pred             HHHHHHHHcCCChhh--cCCCCcCCCCC-ccHHHHHHHHHHHhCchh--hhhcccccchHHHHHHHHHhcC----CCCCe
Confidence            466776665332111  11233345443 467779999999999976  4443   259999999999999    89999


Q ss_pred             EEE-cCCCCcchHHHHHHH-------HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccc----cccccChH
Q 040741          149 VIT-TQTEHKCVLDSCRHL-------QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE----IGVIQPME  216 (457)
Q Consensus       149 vi~-~~~~h~~~~~~~~~~-------~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~----~G~~~~l~  216 (457)
                      ++. +..-|....+.+...       +..|++...++..++|.+|.+.++++++++|++|.+----..    +=.+..++
T Consensus        99 ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~~~tk~v~IQRSrGYs~R~sl~i~~I~  178 (403)
T PF06838_consen   99 LLSITGKPYDTLEEVIGIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALKPNTKMVLIQRSRGYSWRPSLTIEEIK  178 (403)
T ss_dssp             EEESSSS--CCHHHHHTSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHHTTEEEEEEE-S-TTSSS----HHHHH
T ss_pred             EEEcCCCchhhHHHHhCCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhccCceEEEEecCCCCCCCCCCCHHHHH
Confidence            985 555666666665332       445788999999999999999999999999999988543211    11223355


Q ss_pred             HHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccC---CCCceEEEEecCCCcccccccc--CCccc
Q 040741          217 EIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYG---PKGVGALYMRRRPRIRVEPLIN--GGGQE  288 (457)
Q Consensus       217 ~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g---~~G~G~l~~~~~~~~~~~~~~~--~~~~~  288 (457)
                      ++.+++|+.  ++.+++|.+|+-........+.++|++.+|+-| ..|   |. .|+++++++++++....+.  |-+.+
T Consensus       179 ~~i~~vk~~~p~~iifVDNCYGEFvE~~EP~~vGADl~aGSLIKNpGGgiApt-GGYIaGr~~lVe~~a~RLTaPGiG~e  257 (403)
T PF06838_consen  179 EIIKFVKEINPDVIIFVDNCYGEFVETQEPTEVGADLMAGSLIKNPGGGIAPT-GGYIAGRKDLVERAAYRLTAPGIGKE  257 (403)
T ss_dssp             HHHHHHHHH-TTSEEEEE-TTTTTTSSS-GGGGT-SEEEEETTSGGGTTT-SS--EEEEESHHHHHHHHHHHS-TTTGGG
T ss_pred             HHHHHHHhhCCCeEEEEeCCcceeccccCccccchhheeccceeCCCCCccCc-CCEEechHHHHHHHHhhhcCCccccc
Confidence            666666665  899999999998877777778899999999999 544   45 4999999988887654443  33333


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceEEEEEccccchHHH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNLNLSFAYVEGESLL  367 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  367 (457)
                      -+.   +...  .-.+...+-  ..  +....+..+-+-.....+++  .|+.+....+ .+.-.+..+.+..  .+.+.
T Consensus       258 ~G~---t~~~--~R~~~QGlF--lA--P~vV~eAlKgaif~A~~fe~--lG~~v~P~~~~~R~DiIQai~l~~--~e~l~  324 (403)
T PF06838_consen  258 VGA---TLGT--NRLMFQGLF--LA--PHVVGEALKGAIFAAALFEK--LGFEVSPKPDDPRSDIIQAIELGS--PEKLI  324 (403)
T ss_dssp             SS-----TTT--HHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHH--TT-EEES-TTS--SSS-EEEE-SS--HHHHH
T ss_pred             ccc---Ccch--HHHHHhHHh--hc--hHHHHHHHHHHHHHHHHHHH--cCCcCCCCCCCCCCceEEEEECCC--HHHHH
Confidence            222   1111  111111111  11  33333333334444455566  5888876544 4445555566643  34444


Q ss_pred             hccc
Q 040741          368 MGLK  371 (457)
Q Consensus       368 ~~l~  371 (457)
                      ...+
T Consensus       325 ~FC~  328 (403)
T PF06838_consen  325 AFCQ  328 (403)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.50  E-value=1.8e-11  Score=129.24  Aligned_cols=288  Identities=13%  Similarity=0.091  Sum_probs=194.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~  174 (457)
                      ..+..+..-+++.++++++|.+-.+.-+-.++|.+-+.++++... .+.++.+|++++..|+.+...++ +++..|++++
T Consensus       119 sQG~Lqal~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~~-~~~k~~~~~v~~~~hP~~~~v~~t~~~~~g~~i~  197 (954)
T PRK12566        119 AQGRLEALLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKRV-AKSKSNRFFVDEHCHPQTLSVLRTRAEGFGFELV  197 (954)
T ss_pred             hhHHHHHHHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHHH-hhcCCCEEEECCCCCHHHHHHHHHhhhcCCcEEE
Confidence            445557888999999999999987788888888877766655432 22346789999999999888766 4466688877


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh--hcCCCcccCCCCcccEE
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ--ALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~--~~g~~~~~~~~~~~Di~  252 (457)
                      .           +++++.+++++..+++..|+ ..|.+.++++|.+++|+.|.+++ +++.  +++.+ ....++|+||+
T Consensus       198 ~-----------~~~~~~~~~~~~~v~vq~P~-~~G~i~d~~~i~~~~h~~gal~~-~~~d~laL~ll-~~Pge~GADI~  263 (954)
T PRK12566        198 V-----------DAVDNLAAHAVFGALLQYPD-THGEIRDLRPLIDQLHGQQALAC-VAADLLSLLVL-TPPGELGADVV  263 (954)
T ss_pred             E-----------cchhhcCCCCEEEEEEECCC-CceEEccHHHHHHHHHHcCCEEE-EEeCHHHHhCC-CChhhcCCcEE
Confidence            5           23444566677777777774 58999999999999999999866 4333  33332 23567899999


Q ss_pred             Eeccccc-----cCCCCceEEEEecCCCccccccccCC-----------------ccccccccCCCChhHHHHHH---HH
Q 040741          253 SLSGHKI-----YGPKGVGALYMRRRPRIRVEPLINGG-----------------GQERGIRSGTLPTPLIVGFG---SA  307 (457)
Q Consensus       253 ~~s~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~t~~~~~~~al~---~a  307 (457)
                      +++.+-+     ||.++.|++.+++++..++.-.+.|-                 .|+-+..-.|.|+....++.   ++
T Consensus       264 vG~~Q~fGvp~~~GGP~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAtSNICT~qaL~A~~a~  343 (954)
T PRK12566        264 LGSTQRFGVPMGYGGPHAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKANSNICTAQVLLANIAG  343 (954)
T ss_pred             eeCCCcCCCCCCCCCCCeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhccccchhhHHHHHHHHHHH
Confidence            9987753     56666999999987655554333321                 11112234566665444333   22


Q ss_pred             HHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccC
Q 040741          308 CEI---AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACT  382 (457)
Q Consensus       308 l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~  382 (457)
                      +-.   ..+++.++.+++..++.++.+.|.+  .|+++..+   .+...+.+.+. .+..++....  +++.++-     
T Consensus       344 ~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~--~g~~~~~~---~fF~~~~v~~~-~~~~~~~~~a~~~~~n~r~-----  412 (954)
T PRK12566        344 FYAVYHGPEGLKRIAQRVHRLTAILAAGLEA--KGIKRLNR---HFFDTLTLEVG-GAQAAIIESAEAARINLRI-----  412 (954)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHh--cCCccccC---CccceEEEEcc-CCHHHHHHHHHHCCCeeEE-----
Confidence            222   2356889999999999999999998  68877543   22333334442 1233343322  4554431     


Q ss_pred             CCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          383 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       383 ~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                                        .+.+.+.+++...++.+|++.++.++.
T Consensus       413 ------------------~~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        413 ------------------LGRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             ------------------eCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence                              112678999999999999999999984

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=99.48  E-value=3.1e-11  Score=115.10  Aligned_cols=312  Identities=18%  Similarity=0.234  Sum_probs=200.1

Q ss_pred             hHHHHHHHH----HHHHHHHhCCCC---------CcEEEeCChHHHHHHHHHHhhhh----hcCC-----------CCEE
Q 040741           98 ESEVAVETA----RSQIADLIGASP---------KEIIFTSGATESNNVSIKGVMHF----YKDK-----------KRHV  149 (457)
Q Consensus        98 ~~~~~~~~~----~~~la~~~g~~~---------~~i~~t~g~T~a~~~al~~~~~~----~~~~-----------g~~v  149 (457)
                      .+.+...++    -++|+++++.+.         ...++.++++++..+++.+.+.-    .++.           +-.+
T Consensus       106 ~ssPa~TELE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ~tases~lvallaaR~~~i~~~k~~~p~~~e~~~~~~lV~  185 (511)
T KOG0628|consen  106 ASSPACTELEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQGTASESVLVALLAARTEKIEEIKSRPPELHESSVLARLVA  185 (511)
T ss_pred             ecCcchHHHHHHHHHHHHHHhcCcHHHhccCCCCCcceEecCcchhHHHHHHHHHHHHHHHhhcCCCcccchhhhhhheE
Confidence            333444444    488888887532         23677778999988888875521    1111           1235


Q ss_pred             EEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC------ceEEEEeccccccccccChHHHHHHHH
Q 040741          150 ITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD------TGLISVMAVNNEIGVIQPMEEIGQICK  223 (457)
Q Consensus       150 i~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~  223 (457)
                      ..++..|.++-.++...   |.+.+.++.+.+..++.+.|+++|.++      +-+++.+...+.+=...++.+|..+|+
T Consensus       186 Y~SDqahssveka~~i~---~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~  262 (511)
T KOG0628|consen  186 YCSDQAHSSVEKACLIA---GVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCR  262 (511)
T ss_pred             EecCcccchHHHhHhhc---ceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhh
Confidence            67888999999998887   999999999989899999999999764      234444444333335567999999999


Q ss_pred             hcCCcEEEehhhhcCCCcc-cCCCC-----cccEEEeccccc-cCCCCceEEEEecCCC-cc---ccccccCC---cccc
Q 040741          224 EFKIPFHTDAAQALGKIPV-DVEKW-----NVSLMSLSGHKI-YGPKGVGALYMRRRPR-IR---VEPLINGG---GQER  289 (457)
Q Consensus       224 ~~~v~li~D~a~~~g~~~~-~~~~~-----~~Di~~~s~~K~-~g~~G~G~l~~~~~~~-~~---~~~~~~~~---~~~~  289 (457)
                      ++|+++|+|+||+..+.-. .+...     .+|.+.+..||+ +--..|..++++++.. .+   ..|...-+   +...
T Consensus       263 ~~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~  342 (511)
T KOG0628|consen  263 EEGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAP  342 (511)
T ss_pred             hcCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCC
Confidence            9999999999998554321 11111     368999999994 4555689999988621 11   12222111   0111


Q ss_pred             ccccCCCChhH-HHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc--
Q 040741          290 GIRSGTLPTPL-IVGFGSACEI---AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG--  363 (457)
Q Consensus       290 ~~~~~t~~~~~-~~al~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  363 (457)
                      .++....+... .-++...+.+   .-+.+.+.+.+..++++.+.+.+.+ -+.+++..+   +..+.+.|+.++.+.  
T Consensus       343 Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~-d~~FE~~~~---~~lgLvcFRlk~~N~~n  418 (511)
T KOG0628|consen  343 DYRHWQIPLGRRFRSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRA-DPRFEIVNK---RILGLVCFRLKGDNEIN  418 (511)
T ss_pred             CccccccccccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeecc---cccceeEEeecCCcHHH
Confidence            22222222221 1122222211   1234777777888899999888877 678888664   446777778775532  


Q ss_pred             hHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          364 ESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       364 ~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      +.++.++   ..|.+.+..      +              .+.=.|||++.. .++.+||++..+.|.+..+.+.+.
T Consensus       419 e~Ll~~in~~g~i~l~~~~------l--------------~gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~  475 (511)
T KOG0628|consen  419 EALLNRLNSSGRIHLVPAS------L--------------HGKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA  475 (511)
T ss_pred             HHHHHHHHhcCcEEEEEee------e--------------cceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            3455555   234443221      1              122479999755 678999999999999999887655

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.48  E-value=2.8e-11  Score=112.95  Aligned_cols=259  Identities=19%  Similarity=0.209  Sum_probs=165.5

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHHHHHHHHHHhhhhh
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATESNNVSIKGVMHFY  142 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~a~~~al~~~~~~~  142 (457)
                      +|..+++-....+....|.-+.      |.....++-+|+.+|+++    |  ++|++|++|.|++.|+...+..+..  
T Consensus        87 fp~Dai~RA~~~L~~~gGs~Ga------YS~SqGv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~~--  158 (475)
T KOG0258|consen   87 FPTDAIKRAKRILNDCGGSLGA------YSDSQGVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLIA--  158 (475)
T ss_pred             CCHHHHHHHHHHHHhcCCcccc------cccccCChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHhc--
Confidence            7777787777777654442221      222245666777777776    3  4567899999999999999998876  


Q ss_pred             cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEE--EEeCCCCCCCCHHHHHHhcCC-----CceEEEEeccccccccccC-
Q 040741          143 KDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT--YLPVGADGIVNLDELRAAIRP-----DTGLISVMAVNNEIGVIQP-  214 (457)
Q Consensus       143 ~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~--~v~~~~~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G~~~~-  214 (457)
                       .+++-|+++-+.|+-+...+..+   |...+  +++-+.++.+|.++|++.+.+     +++++++.++.||||.+.. 
T Consensus       159 -~~~~GvliPiPQYPLYsAti~l~---~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~  234 (475)
T KOG0258|consen  159 -GKKTGVLIPIPQYPLYSATISLL---GGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSE  234 (475)
T ss_pred             -CCCCceEeecCCCchhHHHHHHh---CCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcH
Confidence             78899999999999887766655   54443  445457889999999988754     5789999999999999876 


Q ss_pred             --hHHHHHHHHhcCCcEEEehhhhcCC------------CcccCCC---CcccEEE-ecccc-cc---CCCCceEEEEec
Q 040741          215 --MEEIGQICKEFKIPFHTDAAQALGK------------IPVDVEK---WNVSLMS-LSGHK-IY---GPKGVGALYMRR  272 (457)
Q Consensus       215 --l~~i~~l~~~~~v~li~D~a~~~g~------------~~~~~~~---~~~Di~~-~s~~K-~~---g~~G~G~l~~~~  272 (457)
                        +++|..+|+++++.++.|+++--..            +...+..   .++.+++ .|.|| .+   |..| |++=+-+
T Consensus       235 e~ie~i~~fa~~~~l~llaDEVYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG-GYmEv~n  313 (475)
T KOG0258|consen  235 ENIEGIICFAAEEGLVLLADEVYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG-GYMESLN  313 (475)
T ss_pred             HHHHHHHHHHHHcCeEEechHHHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-Ceeeccc
Confidence              8899999999999999999873111            1011111   1233333 35678 43   4555 7775443


Q ss_pred             CC---Ccccccccc------CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Q 040741          273 RP---RIRVEPLIN------GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN  343 (457)
Q Consensus       273 ~~---~~~~~~~~~------~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  343 (457)
                      ..   ...+.....      -.++..-..--.++.+.-.    ..+....+-+.+.+..+..++.+.+.+.+ ++++.++
T Consensus       314 ~~prv~~qi~Kl~si~lc~~V~GQ~~vdl~VnPP~Pgd~----Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns-~~gi~cn  388 (475)
T KOG0258|consen  314 RDPRVKQQIKKLASIKLCPQVSGQKLVDLVVNPPKPGDP----SYDLFSSEKDGILSSLRSRAKLTEDAFNS-LEGISCN  388 (475)
T ss_pred             CChhHHHHHHHHHhhhhcCCccchhhhceecCCCCCCCc----chhhhhhhhHhHHHHHHHHhHHHHHHHhh-cCceeec
Confidence            21   111111110      0011100000011111111    11223334577778888888889999999 8999887


Q ss_pred             CC
Q 040741          344 GS  345 (457)
Q Consensus       344 ~~  345 (457)
                      ..
T Consensus       389 ~~  390 (475)
T KOG0258|consen  389 PV  390 (475)
T ss_pred             cC
Confidence            64

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.44  E-value=3.2e-11  Score=118.80  Aligned_cols=307  Identities=12%  Similarity=0.172  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCC-hHHHHHHHHHHhhhhhcCCC----CEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741           99 SEVAVETARSQIADLIGASPKEIIFTSG-ATESNNVSIKGVMHFYKDKK----RHVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~~~i~~t~g-~T~a~~~al~~~~~~~~~~g----~~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      ..+.+.+++++|.++.|.+.  +.|.++ |..+-...++.++.++..+|    +..+++-..|.....++..+   |.+|
T Consensus       580 Y~~lf~~Le~~Lc~iTG~D~--~s~QPNsGA~GEYaGL~~IRaY~~~kge~hRnvClIPvSAHGTNPASA~Ma---gmkv  654 (1001)
T KOG2040|consen  580 YQQLFTELEKDLCEITGFDS--FSLQPNSGAQGEYAGLRVIRAYLESKGEGHRNVCLIPVSAHGTNPASAAMA---GMKV  654 (1001)
T ss_pred             HHHHHHHHHHHhheeecccc--eeecCCCCcccchhhHHHHHHHHHhccCCcceeEEEeecccCCChhhHHhc---CCEE
Confidence            34789999999999999865  777665 44444455555554443333    45688999999998887776   9999


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCC---ceEEEEeccccccccccC-hHHHHHHHHhcCCcEEEehhhhcCCCcc-cCCCCc
Q 040741          174 TYLPVGADGIVNLDELRAAIRPD---TGLISVMAVNNEIGVIQP-MEEIGQICKEFKIPFHTDAAQALGKIPV-DVEKWN  248 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~---t~li~i~~~~~~~G~~~~-l~~i~~l~~~~~v~li~D~a~~~g~~~~-~~~~~~  248 (457)
                      +.+.++.+|.+|+.+|++..+..   -..+.++.+++ .|+..+ +++++++.++||-.++.|+|..-..+.+ ...++|
T Consensus       655 vpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPST-~GvfE~~i~d~cd~iHehGGQVYlDGANMNAqVGlc~pGd~G  733 (1001)
T KOG2040|consen  655 VPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPST-HGVFEEGIDDICDIIHEHGGQVYLDGANMNAQVGLCRPGDIG  733 (1001)
T ss_pred             EEeeccCCCCccHHHHHHHHHHhhhhhheeEEecccc-cccccccHHHHHHHHHhcCCEEEecCCCccceecccCCcccc
Confidence            99999999999999999987643   45667776654 688876 9999999999999999999987543332 345668


Q ss_pred             ccEEEecccccc------CCCCceEEEEecCCCcccc--ccccC--Ccccccc------ccCCCChhHHHHHHHHHHHH-
Q 040741          249 VSLMSLSGHKIY------GPKGVGALYMRRRPRIRVE--PLING--GGQERGI------RSGTLPTPLIVGFGSACEIA-  311 (457)
Q Consensus       249 ~Di~~~s~~K~~------g~~G~G~l~~~~~~~~~~~--~~~~~--~~~~~~~------~~~t~~~~~~~al~~al~~~-  311 (457)
                      .|+--..+||-|      |.+|+|-+.+++-+...+.  +...-  -+....+      .+|+.....+ .+ +-++.+ 
T Consensus       734 aDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaaP~Gsa~ILpI-Sw-aYikmMG  811 (1001)
T KOG2040|consen  734 ADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAAPWGSALILPI-SW-AYIKMMG  811 (1001)
T ss_pred             ccceeecccceeeecCCCCCCCCCccchhhhccccCCCCCccCCCCCCCCCCccceeccCCCcceeehh-HH-HHHHHhc
Confidence            999999999933      4567888988865443332  11110  0111111      1111111111 11 111111 


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc------cccchHHHhcccCeEe--cccCccCC
Q 040741          312 KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA------YVEGESLLMGLKEVAV--SSGSACTS  383 (457)
Q Consensus       312 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~i~~--~~g~~~~~  383 (457)
                      ..++....+..--+++|+.+.|+..+ . .++..+.+....-+.+...      +++..+++.+|....+  ..-     
T Consensus       812 ~~GL~~as~~AiLNaNYMakRLe~hY-k-il~~~~~~~vaHEFIlD~r~fK~~agieavDvAKRL~DYgFHaPTm-----  884 (1001)
T KOG2040|consen  812 SGGLKDASKIAILNANYMAKRLESHY-K-ILFRGENGLVAHEFILDLRPFKKTAGIEAVDVAKRLMDYGFHAPTM-----  884 (1001)
T ss_pred             ccccchhhHHHhhhhHHHHHHHhhcc-c-eeEecCCcceeeeeeeechhhccccCCcHHHHHHHHHhccCCCCcc-----
Confidence            12477777777788999999999822 2 2333333333333333331      3556677777743222  111     


Q ss_pred             CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          384 ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       384 ~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                .+.+     .+.+-|-+....+++|+|+++++|..+-+++++
T Consensus       885 ----------swPV-----~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~  921 (1001)
T KOG2040|consen  885 ----------SWPV-----AGTLMIEPTESEDKAELDRFCDALISIREEIAQ  921 (1001)
T ss_pred             ----------cccc-----CCceEeccCccccHHHHHHHHHHHHHHHHHHHH
Confidence                      1111     277888888888899999999999988887764

>KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism]

Probab=99.43  E-value=4.2e-11  Score=107.15  Aligned_cols=340  Identities=15%  Similarity=0.107  Sum_probs=225.7

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEE-eCChHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-EIIF-TSGATESN  131 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~-t~g~T~a~  131 (457)
                      ..+.|. +|+..+|.+|+..+.+-+.++.|..-+   .+|+ +.+....+.+.+..++++++.+.. +++| ..|||..+
T Consensus         7 ~vvnFa-aGPAklp~~VL~e~qkdl~n~~g~GisV~EmSHR-sk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qF   84 (370)
T KOG2790|consen    7 RVVNFA-AGPAKLPESVLLEAQKDLLNFNGSGISVMEMSHR-SKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQF   84 (370)
T ss_pred             ceeecC-CCcccCCHHHHHHHHHHhhccCCCcceEEEeccc-chhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccc
Confidence            344543 356689999999988887765432111   1222 445668999999999999999754 3554 55577666


Q ss_pred             HHHHHHhhh-hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeCC-CC--CCCCHHHHHHhcCCCceEEEEeccc
Q 040741          132 NVSIKGVMH-FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPVG-AD--GIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       132 ~~al~~~~~-~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~~-~~--~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      ..+...+.. -..+.-|.|++..+.-.+..++-++    |.. .+..+.. ..  ..+|.+.++  .+++...+..|...
T Consensus        85 aAv~lNL~glK~g~~AdYiVTGsWS~KA~~EAkk~----~~~~~V~~~~k~y~ygkvPd~~~w~--~~~da~yvyyCaNE  158 (370)
T KOG2790|consen   85 AAVPLNLIGLKHGRCADYVVTGSWSAKAAEEAKKY----GTPNIVIPKLKSYTYGKVPDPSTWE--LNPDASYVYYCANE  158 (370)
T ss_pred             cccchhhhccccCCccceEEeccccHHHHHHHHhh----CCceEEeccccccccCcCCChhhcc--cCCCccEEEEecCc
Confidence            555555542 1112457889888887776666443    544 3333332 12  345666665  34566688888877


Q ss_pred             cccccccC-hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccc---cc
Q 040741          207 NEIGVIQP-MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP---LI  282 (457)
Q Consensus       207 ~~~G~~~~-l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~---~~  282 (457)
                      +..|+-.+ ++    +-.-++..++.|-..-+-+.++|+.++  ++++...+|-.||.|+-++++|++++.+..+   ..
T Consensus       159 TVHGVEf~~~P----~~~~~~~vlVaDmSSnflSrpvDvsk~--gvi~aGAQKN~G~aG~Tvvivr~dllg~~~~~tP~v  232 (370)
T KOG2790|consen  159 TVHGVEFDFIP----VNDPKGAVLVADMSSNFLSRPVDVSKF--GVIFAGAQKNVGPAGVTVVIVRKDLLGNALDITPSV  232 (370)
T ss_pred             eeeceecCCCC----CCCCCCceEEEecccchhcCCccchhc--ceEEeccccccCccccEEEEEehhhhcccccCCccc
Confidence            77887654 32    224468999999999999999999874  5788889999999999999999988776543   32


Q ss_pred             cCCcc--ccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEE
Q 040741          283 NGGGQ--ERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLS  357 (457)
Q Consensus       283 ~~~~~--~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~  357 (457)
                      ..+..  .....+.|+|...++.+.-.++++.+  ++.++.+...+.++.+.+.|.+ ..|+ .+..++..+...++.|+
T Consensus       233 ~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~il~~GGl~a~e~~n~~KskllYd~iD~-s~gfy~cpVe~~~RS~MNV~Fr  311 (370)
T KOG2790|consen  233 LDYKIMDKNNSLYNTPPCFGIYVMGLVFEWILEKGGLAAMEKLNQEKSKLLYDAIDN-SNGFYRCPVEPSVRSRMNVPFR  311 (370)
T ss_pred             cceeeeccccccccCCCeeeeeehhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh-cCCeEEcccchhhhhhccccee
Confidence            22211  12344669999999988888998876  4888888889999999999998 5555 44444445555556666


Q ss_pred             Eccccc-hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEG-ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       358 ~~~~~~-~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +...+- .+++..-  ++..                     ++.....-+.||-++-...+.++++.++..|+++.+.
T Consensus       312 i~~d~Le~eFLkeA~~~~mv---------------------~LKGhRSVGGiRASlYNAisv~~~q~L~~~m~~F~k~  368 (370)
T KOG2790|consen  312 IEKDELEAEFLKEAAKEHMV---------------------QLKGHRSVGGIRASLYNAISVEEVQKLAAFMKEFQKK  368 (370)
T ss_pred             ecchHHHHHHHHHHHHhhhh---------------------ccccccccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence            652211 1222111  1111                     0111112278999998889999999999999998764

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=99.42  E-value=2.5e-12  Score=122.44  Aligned_cols=301  Identities=18%  Similarity=0.146  Sum_probs=165.0

Q ss_pred             HHHHHHHHHHHHHhCCC-CCcEEEeCChHH-HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC
Q 040741          101 VAVETARSQIADLIGAS-PKEIIFTSGATE-SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV  178 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~-~~~i~~t~g~T~-a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~  178 (457)
                      .....+...+-+..|+. ...++.++-+|. ++.+.+.++.  ....++.||.+...|.+.+.++..+   |++++.++.
T Consensus        56 ~ltn~l~~d~~~~~G~~~~~~~~~vP~atgm~l~l~l~~l~--~r~~a~~Viw~ridqkSc~kai~~A---Gl~~~vV~~  130 (389)
T PF05889_consen   56 KLTNSLVLDALRLAGLRSVKSCFVVPMATGMSLTLCLLALR--MRPKAKYVIWPRIDQKSCFKAIERA---GLEPVVVEN  130 (389)
T ss_dssp             HHHHHHHHHHHHHTTHTTHCEEEEESS-HHHHHHHHHHHHH--HHCT--EEEEEEEETHHHHHHHHHT---T-EEEEE-E
T ss_pred             HHHHHHHHHHHHHcCCccccceEEEecccccHHHHHHHHHh--cccCCceEEEeeccccchHHHHHhc---CCeEEEeec
Confidence            34444455555567875 234777777664 5666666765  2256899999999999999998777   999999885


Q ss_pred             C--CC-CCCCHHHHHHhcCC---CceEEEEeccccccccccC-hHHHHHHHHhcCCcEEEehhhhcCCCcc------cCC
Q 040741          179 G--AD-GIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQP-MEEIGQICKEFKIPFHTDAAQALGKIPV------DVE  245 (457)
Q Consensus       179 ~--~~-~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~-l~~i~~l~~~~~v~li~D~a~~~g~~~~------~~~  245 (457)
                      .  .+ -..|++.+|+++++   +..+.++++++...|...| +++|+++|++||++.++..||++-....      ...
T Consensus       131 ~~~~d~l~td~~~ie~~i~~~G~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~~~~~~~i~~a~~  210 (389)
T PF05889_consen  131 VLEGDELITDLEAIEAKIEELGADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQSSKCMHLIQQAWR  210 (389)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHCGGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-HHHHHHHHHHHH
T ss_pred             cCCCCeeeccHHHHHHHHHHhCCCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhHHHHHHHHHHHHh
Confidence            4  22 24578888888853   4577788888888898887 9999999999999999999999811100      000


Q ss_pred             CCcccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          246 KWNVSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       246 ~~~~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      ...+|+++-|.-| +.-|-|.+.++...+ .+..+...+.|.         ....+..-.+...+.+...++.....+..
T Consensus       211 ~GRvda~vqS~dkNF~VPvGgai~As~~~~~i~~vs~~YpGR---------as~sp~ld~~itLl~LG~~g~~~ll~~r~  281 (389)
T PF05889_consen  211 VGRVDAFVQSTDKNFMVPVGGAIMASFDPSGILAVSKEYPGR---------ASASPSLDLFITLLSLGCTGYGALLKERK  281 (389)
T ss_dssp             HSTCSEEEEEHHHHHCEESSHEEEEESSHHHHHHHHHTSHSH---------BTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcceeeeecCCCEEecCCCcEEEecCHHHHHHHHHHhhhh---------hhcccchHHHHHHHHHhhhHHHHHHHHHH
Confidence            1124555556666 555655444444332 112222222221         11112222233333333344555555555


Q ss_pred             HHHHHHHHHHhhc---CCCeEEeCCCCCcccceEEEEEcccc------chHHHhcc--c---CeE-eccc-CccCCCCCC
Q 040741          324 ALHDRLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYVE------GESLLMGL--K---EVA-VSSG-SACTSASLE  387 (457)
Q Consensus       324 ~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l--~---~i~-~~~g-~~~~~~~~~  387 (457)
                      +...++.+.|+++   . +-++...+  ..+..+.+......      ...+...|  +   |+. +.++ ...+     
T Consensus       282 ~~f~~l~erl~~~aee~-~e~ll~~p--~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~t-----  353 (389)
T PF05889_consen  282 ASFPYLKERLKKWAEEV-GERLLETP--RNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQT-----  353 (389)
T ss_dssp             HHHHHHHHHHHHHHHHT-TEEBSSST--T-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEE-----
T ss_pred             HHHHHHHHHHHHHHHHh-hhhhcCCC--CCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCccc-----
Confidence            5555555554431   2 23333222  23555566665332      23444455  2   322 1111 1111     


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                             .+ .......++-++....+++||||.++++|+++++
T Consensus       354 -------sh-~~~yp~~Ylt~AsaiG~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  354 -------SH-SSNYPCPYLTAASAIGMTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             -------TT-SS--SSSEEEEEE-TT--HHHHHHHHHHHHHHHH
T ss_pred             -------cc-CCCCchHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence                   01 1123458999988888999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.25  E-value=2.3e-09  Score=99.34  Aligned_cols=342  Identities=18%  Similarity=0.149  Sum_probs=197.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh-hc
Q 040741           65 ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF-YK  143 (457)
Q Consensus        65 ~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~-~~  143 (457)
                      |++.++.....+|..--+.+-|+             ..+..+++.+.+.+|.+.  ++-|.-|..|-++.+..+... -.
T Consensus        56 GTgams~~qwaamm~GDEAYags-------------rs~~~L~~avkdifGfq~--~iPthQGRgAE~Il~~i~ik~~~~  120 (471)
T COG3033          56 GTGAMTDKQWAAMMRGDEAYAGS-------------RSYYALADAVKDIFGFQY--TIPTHQGRGAENILIPILIKKGEQ  120 (471)
T ss_pred             CcccccHHHHHHHhccchhhccc-------------ccHHHHHHHHHHhcCcee--eeeccCCccHHHHHHHHHhhhccc
Confidence            45588888888877664433222             345678889999999754  777888888877766655521 11


Q ss_pred             CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----------CCCCCCHHHHHHhcCC----CceEEEEeccccc-
Q 040741          144 DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG----------ADGIVNLDELRAAIRP----DTGLISVMAVNNE-  208 (457)
Q Consensus       144 ~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----------~~~~~d~~~le~~i~~----~t~li~i~~~~~~-  208 (457)
                      .+|.+.+..+..|.-...+  +.+..|..++-++++          -.|.+|++.|++.|++    +...|+.+-.+|. 
T Consensus       121 ~pg~~~~~~sN~~FdTTr~--h~~~ng~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~Nsa  198 (471)
T COG3033         121 EPGSKMVAFSNYHFDTTRG--HIQINGATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSA  198 (471)
T ss_pred             cCCccccccccceecchhH--HHHhcCCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEecccc
Confidence            3455566655566555443  223346666555443          2468999999999974    4556655555554 


Q ss_pred             ccccc---ChHHHHHHHHhcCCcEEEehhhhcCC------CcccCCCC-----------cccEEEecccc-ccCCCCceE
Q 040741          209 IGVIQ---PMEEIGQICKEFKIPFHTDAAQALGK------IPVDVEKW-----------NVSLMSLSGHK-IYGPKGVGA  267 (457)
Q Consensus       209 ~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~------~~~~~~~~-----------~~Di~~~s~~K-~~g~~G~G~  267 (457)
                      .|...   +++++.+||++|+++++.|++...--      ...+..+|           -+|-.+.|.-| .....| |+
T Consensus       199 gGQpVSm~n~r~v~~ia~ky~ipvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gf  277 (471)
T COG3033         199 GGQPVSMANMKAVYEIAKKYDIPVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GF  277 (471)
T ss_pred             CCCcchHHhHHHHHHHHHHcCCcEEeehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cE
Confidence            55444   47899999999999999999875311      11111111           36888999988 778886 99


Q ss_pred             EEEecCCC----ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe
Q 040741          268 LYMRRRPR----IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN  343 (457)
Q Consensus       268 l~~~~~~~----~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  343 (457)
                      ++.+++-.    ..++....-  ++..-.+|......+.++...+....+  ....++-.+..+||.++|.+  -|+.++
T Consensus       278 l~~~D~~~fDvy~~~~~~~V~--~eG~~tYGgl~GrdmealAvGL~e~~~--~~yl~~Rv~Qv~YL~~~l~~--~GVpi~  351 (471)
T COG3033         278 LCFKDDSFFDVYEECRTLVVV--QEGFPTYGGLAGRDMEALAVGLREGVN--FDYLAHRVAQVQYLADGLEE--AGVPIV  351 (471)
T ss_pred             EEecCccHHHHHHHHHhheEe--eccccccCcccchhHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHh--cCCeeE
Confidence            99998732    222221110  111123445555566666555544333  22333334455678888888  577666


Q ss_pred             CCCCCcccceEEE--EEccc-----cchHHHhcc---cCeEecc-cCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC
Q 040741          344 GSMERRYIGNLNL--SFAYV-----EGESLLMGL---KEVAVSS-GSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR  412 (457)
Q Consensus       344 ~~~~~~~~~~~~~--~~~~~-----~~~~~~~~l---~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~  412 (457)
                      .+.. .+..++..  -++..     .++.+...|   .||-... |++......       .-|......-..+|+.+.+
T Consensus       352 ~paG-GHavfvda~~~lphip~eqFpaqala~ely~e~GiRavElG~~~~~rd~-------ktg~q~~~~~elvRltipR  423 (471)
T COG3033         352 QPAG-GHAVFVDAGKFLPHIPAEQFPAQALACELYKEAGIRAVELGSFSLGRDP-------KTGKQHPPPAELVRLTIPR  423 (471)
T ss_pred             ecCC-CceEEeehhhhcCCCChhhCcHHHHHHHHHHHhCeeeeeeeceecccCC-------CccccCCCchheeeEeccc
Confidence            5432 22222211  11222     234444444   3554433 322111000       0011111122689999987


Q ss_pred             C-CCHHHHHHHHHHHHHHHHHHHhcCh
Q 040741          413 F-TTEAEVDRAIELTVKQVEKLREMSP  438 (457)
Q Consensus       413 ~-~t~edid~~~~~l~~~~~~~~~~~~  438 (457)
                      . -|.+++|++++.+++..+.-.+-.+
T Consensus       424 rtYt~~HmD~V~~a~~~l~e~~~~ikg  450 (471)
T COG3033         424 RTYTQTHMDFVIEAFKALKENAEDIKG  450 (471)
T ss_pred             cccchhHHHHHHHHHHHHHhccccCCC
Confidence            5 4789999999999988875444333

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=99.22  E-value=1e-09  Score=99.15  Aligned_cols=343  Identities=13%  Similarity=0.112  Sum_probs=196.1

Q ss_pred             cccccCCCcEEecCCC----CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeC
Q 040741           50 KGVRIAGRPLYLDMQA----TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTS  125 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~----~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~  125 (457)
                      +.+....+.-|||.-.    .+.+.|+|.+|....+...-.|..       ....+.++-+++..+.+-+++  -++|++
T Consensus        39 QYmfDE~g~~yLDCInNVaHvghchp~VV~A~~kQmat~~tN~R-------Flhd~lv~cA~~l~stlPeLs--vc~F~N  109 (452)
T KOG1403|consen   39 QYMFDEEGTRYLDCINNVAHVGHCHPEVVRAGAKQMATISTNNR-------FLHDELVQCARTLTSTLPELS--VCFFVN  109 (452)
T ss_pred             ceeeccCcccHHHHhhhhhhcccCCHHHHHHHHHHHhHhcccch-------hhHHHHHHHHHHHhhcCCCce--EEEEec
Confidence            3333334444565322    346899999999998875433311       122355555666666666654  499999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH---HhcC---cEEEE---EeCCC--CC------------
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL---QQEG---FEITY---LPVGA--DG------------  182 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~---~~~G---~~v~~---v~~~~--~~------------  182 (457)
                      +|++|+.++++....|. +..|.|.+....|......++..   -+.|   .++.+   .|+++  .|            
T Consensus       110 SGSEANDLALRLAR~ft-khqDvItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~  188 (452)
T KOG1403|consen  110 SGSEANDLALRLARNFT-KHQDVITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADM  188 (452)
T ss_pred             CCchhhHHHHHHHHhhc-ccCceEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccc
Confidence            99999999999877653 44555555554454433332222   0111   12222   23321  11            


Q ss_pred             -CCCHHHHHHhcCC------CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC---c--ccCC
Q 040741          183 -IVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI---P--VDVE  245 (457)
Q Consensus       183 -~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~---~--~~~~  245 (457)
                       ..-.+++++.+.+      ..+.++.+..++=.|.+.|    .+++++..+.+|-..|.|+++- +|.+   .  +...
T Consensus       189 ~~~Yad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y  268 (452)
T KOG1403|consen  189 GALYADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTY  268 (452)
T ss_pred             hhhhhhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhh
Confidence             1112444544431      2344556666666788877    6789999999999999999984 4432   1  1122


Q ss_pred             CCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          246 KWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       246 ~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      ..-+||++..  |..| .-.++++..+++..+.+..    .+.+. |.....++..++...+.++.+++  +.+.++.++
T Consensus       269 ~fiPDIVtmg--KpmGNGhPVa~VattkeIA~Af~a----tgv~Y-FNTyGGnPVsCAv~laVm~v~e~--E~Lq~ha~~  339 (452)
T KOG1403|consen  269 NFIPDIVTMG--KPMGNGHPVAAVATTKEIAQAFHA----TGVEY-FNTYGGNPVSCAVGLAVMRVCED--ENLQEHAQQ  339 (452)
T ss_pred             ccccchheec--ccCCCCCeeeEEeccHHHHHHhcc----cccee-hhccCCCchhHHHHHHHHHHHhh--hhHHHHHHH
Confidence            2346888776  9444 4458999888764444322    12111 22223344444444456666665  666777777


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc-------hH----HHhcc---cCeEecccCccCCCCCChhH
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG-------ES----LLMGL---KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----~~~~l---~~i~~~~g~~~~~~~~~~~~  390 (457)
                      ..+++...|++......++|+.   ++..+++.+.-+.+       .+    +..+|   .+|.++.-            
T Consensus       340 vG~~L~~lL~~~k~kh~~IGDv---RGvGLFiGIdLVkD~~tRtP~tk~A~~~v~rlke~y~VLlsaD------------  404 (452)
T KOG1403|consen  340 VGEKLEVLLRRLKQKHECIGDV---RGVGLFIGIDLVKDRKTRTPDTKEAHWVVNRLKELYRVLLSAD------------  404 (452)
T ss_pred             HHHHHHHHHHHHhhhccceecc---ccceEEEeeeeecccccCCCcHHHHHHHHHHHHHhhhEEEecC------------
Confidence            7777777776522234555542   13334444422211       11    12222   35555421            


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                               ...++.+.|-+....++|+++.++..|.+++..+.+
T Consensus       405 ---------GPh~NilKiKPPmCFneena~e~v~~ld~iLT~mee  440 (452)
T KOG1403|consen  405 ---------GPHRNILKIKPPMCFNEENADEFVLGLDEILTVMEE  440 (452)
T ss_pred             ---------CCCCceeecCCCcccChhhHHHHHHHHHHHHHHHHH
Confidence                     223478899988888899999999999999876544

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=99.06  E-value=6.9e-09  Score=93.93  Aligned_cols=172  Identities=18%  Similarity=0.175  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHhCCCCC--cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHH-------HHHhcCc
Q 040741          102 AVETARSQIADLIGASPK--EIIFTSGATESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCR-------HLQQEGF  171 (457)
Q Consensus       102 ~~~~~~~~la~~~g~~~~--~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~-------~~~~~G~  171 (457)
                      ....+++-.|+.||++..  ...|.+ ||.|+..++.+++    .|||+++. ...-|....+.+.       .++..|+
T Consensus        66 GRdtLe~vyA~vf~aE~a~VRpq~is-GTHAI~~aLfg~L----RpgDell~i~G~PYDTLeevIG~rg~~~gSL~dfgi  140 (416)
T COG4100          66 GRDTLERVYAQVFGAEAALVRPQIIS-GTHAIACALFGIL----RPGDELLYITGSPYDTLEEVIGLRGEGQGSLKDFGI  140 (416)
T ss_pred             chhHHHHHHHHHhccccceeeeeeec-chhHHHHHHHhcc----CCCCeEEEecCCcchhHHHHhccCCCCcccHHHhCc
Confidence            455688899999999764  244554 8999999999999    89999864 3333444443322       2344577


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc----ccccccChHHHHHHHHhc--CCcEEEehhhhcCCCcccCC
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN----EIGVIQPMEEIGQICKEF--KIPFHTDAAQALGKIPVDVE  245 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~----~~G~~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~  245 (457)
                      ....+|...+|.+|.+.++.+++++|++|.+-.-..    |+=.+.+++++.++.|+-  ++++++|.+++-........
T Consensus       141 ~Y~~v~Lt~~gkiD~~~v~~~i~~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVDNCYGEFvE~~EPt  220 (416)
T COG4100         141 KYKAVPLTADGKIDIQAVKTAISDRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVDNCYGEFVEEKEPT  220 (416)
T ss_pred             ceeecccccCCcccHHHHHHhcCccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEeccchhhhhccCcc
Confidence            788888889999999999999999999998854321    122344567777777775  79999999999776666667


Q ss_pred             CCcccEEEecccc-ccC--CCCceEEEEecCCCccc
Q 040741          246 KWNVSLMSLSGHK-IYG--PKGVGALYMRRRPRIRV  278 (457)
Q Consensus       246 ~~~~Di~~~s~~K-~~g--~~G~G~l~~~~~~~~~~  278 (457)
                      +.++|++.+|+-| ..|  ..-.|++.++.++.+..
T Consensus       221 ~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~  256 (416)
T COG4100         221 HVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAA  256 (416)
T ss_pred             ccchhhhccceeeCCCCceeeccceeechHHHHHhh
Confidence            7789999999999 444  22359999998877654

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=98.97  E-value=3e-08  Score=98.31  Aligned_cols=301  Identities=13%  Similarity=0.111  Sum_probs=187.6

Q ss_pred             cCCCCCCccchhhhHH------HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcc
Q 040741           85 YGNPHSRTHLFGWESE------VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKC  158 (457)
Q Consensus        85 ~~~p~~~~~~~~~~~~------~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~  158 (457)
                      ..||.+.+..-.|+.+      +.....+..++++.|.+-.+.-+..-||.|-+....+...   .++.+++++...|+.
T Consensus       141 lenp~W~TqYTPYQ~EIsQGRLEsllNyQTmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~~---~krkk~vvd~~~hpq  217 (1001)
T KOG2040|consen  141 LENPGWYTQYTPYQAEISQGRLESLLNYQTMITDLTGLPMANASLLDEGTAAAEAMALCNRI---NKRKKFVVDSNCHPQ  217 (1001)
T ss_pred             hhCCcceeccCCCchhhhhhhHHHHhhhHHhhhhccCCcccchhhhccchhHHHHHHHHHhh---cccceEEecCCCCcc
Confidence            3466665544444443      4555567888999999887888888888887777766654   667779999999999


Q ss_pred             hHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhc
Q 040741          159 VLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL  237 (457)
Q Consensus       159 ~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~  237 (457)
                      ....++-- +..|++++..        |+++...- ..+...+.+-.+.+ .|.+.+..++++.+++.+.++++-.--..
T Consensus       218 tlsV~~TRa~~~~i~v~~~--------~~~~~~~s-~~~v~gvlvQYP~t-~G~i~d~~el~~~a~~~~s~vv~atDLLa  287 (1001)
T KOG2040|consen  218 TLSVVKTRAKGFGIKVVVS--------DIKEADYS-SKDVSGVLVQYPDT-EGSVLDFDELVELAHANGSLVVMATDLLA  287 (1001)
T ss_pred             hhhhhhccccccceeEEec--------CHHHhhcc-ccceeEEEEEcCCC-CCcccCHHHHHHHhhccCceEEEeehhhH
Confidence            98876632 2234443333        22222111 12223333333322 69999999999999999988775433322


Q ss_pred             CCCcccCCCCcccEEEecccccc-----CCCCceEEEEecCCCccccccccCC-----------------ccccccccCC
Q 040741          238 GKIPVDVEKWNVSLMSLSGHKIY-----GPKGVGALYMRRRPRIRVEPLINGG-----------------GQERGIRSGT  295 (457)
Q Consensus       238 g~~~~~~~~~~~Di~~~s~~K~~-----g~~G~G~l~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~t  295 (457)
                      -.+.-...++|+||.++|.+.+.     |.+-.|++.+++++...+.-.+.|-                 .|+-+..-.|
T Consensus       288 LtiLrpPgefGaDIavGSsQRFGVPlGYGGPHAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKAT  367 (1001)
T KOG2040|consen  288 LTILRPPGEFGADIAVGSSQRFGVPLGYGGPHAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKAT  367 (1001)
T ss_pred             HHccCChhhcCceeeeccccccCccccCCCchHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccc
Confidence            23333456789999999998853     3233677777765443333222221                 1112223457


Q ss_pred             CChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhc
Q 040741          296 LPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMG  369 (457)
Q Consensus       296 ~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (457)
                      .|.....++.+-+..+      -++++.+.+++......+..+|+.  .+.++....   +...+.+...+ +.+++...
T Consensus       368 SNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~--aghel~~k~---fFDTLkI~~~~-s~~~~l~r  441 (1001)
T KOG2040|consen  368 SNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKN--AGHELQHKP---FFDTLKIRCGC-SAEEVLDR  441 (1001)
T ss_pred             hhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhh--cchhhcccc---ccceEEEEecC-cHHHHHHH
Confidence            7777777666554433      235889999999999999999998  455554431   33444455543 34444443


Q ss_pred             c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          370 L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       370 l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      -  +.|.++-                       ...+.|-+++-..++.+|+|.++..+.
T Consensus       442 A~~~~iNlr~-----------------------~ed~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  442 AAKRQINLRL-----------------------VEDGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             HHhhcCceEE-----------------------eecCceEEeecccccHHHHHHHHHHHc
Confidence            2  2333321                       112678888888889999999998876

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.92  E-value=1.5e-07  Score=85.91  Aligned_cols=275  Identities=15%  Similarity=0.139  Sum_probs=159.2

Q ss_pred             EEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeC-C-CCCCCCHHHHHHhcCCC-
Q 040741          121 IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPV-G-ADGIVNLDELRAAIRPD-  196 (457)
Q Consensus       121 i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~-~-~~~~~d~~~le~~i~~~-  196 (457)
                      .+=+-|||.|+.++...+..++.  +..|.+++++.......+..+   |+. +...+. + ++-.+|++-+.+.|... 
T Consensus       102 ~vQslsGTGAl~~~A~Fl~~~~~--~~~VY~SnPTW~nH~~if~~a---Gf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~AP  176 (410)
T KOG1412|consen  102 GVQSLSGTGALRIAADFLATFYN--KNTVYVSNPTWENHHAIFEKA---GFTTVATYPYWDAENKCVDLEGFLSDLESAP  176 (410)
T ss_pred             ceeeccccchhhhhHHHHHHhcc--cceeEecCCchhHHHHHHHHc---CCceeeeeeeecCCCceecHHHHHHHHhhCC
Confidence            45566799999999998887763  566999999887777666555   843 333322 2 33467888888777533 


Q ss_pred             --ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhh-hcCCCcccCCCC--------cc-cEEEeccccccC
Q 040741          197 --TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQ-ALGKIPVDVEKW--------NV-SLMSLSGHKIYG  261 (457)
Q Consensus       197 --t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~-~~g~~~~~~~~~--------~~-Di~~~s~~K~~g  261 (457)
                        ..+|+....+||||.-..   |..|+++.++.+.+.+.|.|+ ++.+-..+-+.|        +. -+++-||.|-||
T Consensus       177 e~si~iLhaCAhNPTGmDPT~EQW~qia~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfG  256 (410)
T KOG1412|consen  177 EGSIIILHACAHNPTGMDPTREQWKQIADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFG  256 (410)
T ss_pred             CCcEEeeeccccCCCCCCCCHHHHHHHHHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcc
Confidence              344445556899996543   888999999999999999886 443333333322        32 367889999665


Q ss_pred             CCC--ceEEEE--ecCCC-ccccccccCCccccccccCCCChhHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHH
Q 040741          262 PKG--VGALYM--RRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC------EIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       262 ~~G--~G~l~~--~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al------~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      ..+  +|-+.+  ++... ..+...+.-   ..+.....|+.-+.--....|      +...+.+..+..|+++.+..++
T Consensus       257 lYneRvGnltvv~~n~a~i~~v~SQl~l---viR~~~SNPPAyGArIV~kvL~tP~lre~W~~sik~MssRI~~MR~aLr  333 (410)
T KOG1412|consen  257 LYNERVGNLTVVVNNPAVIAGVKSQLTL---VIRSNWSNPPAYGARIVHKVLSTPELREQWIQSIKTMSSRIKKMRTALR  333 (410)
T ss_pred             cccccccceEEEecChhHHHHHHHHHHH---HHhhccCCCcchhhHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322  555443  32211 111111100   000111122221111111111      1122236777778888888888


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      +.|.. +   .-.|.-+....-+-.|++.+.++.++-...  ..|.+.+.                         +  ||
T Consensus       334 d~L~a-L---~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~-------------------------G--RI  382 (410)
T KOG1412|consen  334 DHLVA-L---KTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSD-------------------------G--RI  382 (410)
T ss_pred             HHHHh-c---CCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecC-------------------------C--cE
Confidence            88776 3   112222211111224677777666543333  35554321                         2  67


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          409 GIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +++..+ ...+|++++++.+.++.+.+
T Consensus       383 nisGLN-~~NveyVAkAIde~Vr~~~~  408 (410)
T KOG1412|consen  383 NISGLN-MKNVEYVAKAIDETVRAIKS  408 (410)
T ss_pred             eeeccc-cccHHHHHHHHHHHHHhhcc
Confidence            776654 58999999999999987653

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.87  E-value=9.2e-08  Score=89.19  Aligned_cols=283  Identities=12%  Similarity=0.125  Sum_probs=147.1

Q ss_pred             HHHHHHHHHHHHhC-C--CCCcEEEeCChHHHHHHHHHHhhhh--hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEE
Q 040741          102 AVETARSQIADLIG-A--SPKEIIFTSGATESNNVSIKGVMHF--YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL  176 (457)
Q Consensus       102 ~~~~~~~~la~~~g-~--~~~~i~~t~g~T~a~~~al~~~~~~--~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v  176 (457)
                      ..++..++|=+.+| +  +...++|.+|+|+.++.++-++.+.  -..+.-.|+...|.|+++.....++.-..++..-=
T Consensus        47 eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~Y~~qt~~f~s~~y~w~Gd  126 (363)
T PF04864_consen   47 ELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSSYPEQTDFFDSRLYKWAGD  126 (363)
T ss_dssp             HHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CHHHHHCCCT-BTTEEEEEE
T ss_pred             HHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccchHHHHHhccccCcccccc
Confidence            33333344444454 2  3446999999999999999999865  22345678889999998887766553333333211


Q ss_pred             eCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecc
Q 040741          177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSG  256 (457)
Q Consensus       177 ~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~  256 (457)
                               .....+.-.+.+-+=+++.||||-|.+-.     .+++.-+..+|.|-|+-++....=....+-|++.|++
T Consensus       127 ---------a~~~~~~~~~~~~IElVTSPNNPDG~lr~-----~V~~g~~~k~I~D~AYYWPhyTpI~~~aD~DiMLFT~  192 (363)
T PF04864_consen  127 ---------ASNFKNSDNPSPYIELVTSPNNPDGQLRE-----AVLNGSSGKVIHDLAYYWPHYTPITAPADHDIMLFTL  192 (363)
T ss_dssp             ---------CCCGTT-S-CCGEEEEEESS-TTT-----------SSTTTEEEEEEE-TT-STTTS---S-B--SEEEEEH
T ss_pred             ---------HHhhccCCCCCCeEEEEeCCCCCcccccc-----hhcCCCCcceeeeeeeecccccccCCCCCCceEEEEE
Confidence                     11111111123444588999999996521     1335667888999999998763322344679999999


Q ss_pred             ccccCCCC--ceEEEEecCCCc-cccccccCCccccccccCCCChh--HHHHHHHHHHHHHHh----------hHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTP--LIVGFGSACEIAKKE----------MDYDHKR  321 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~--~~~al~~al~~~~~~----------~~~~~~~  321 (457)
                      +|+-|-.|  +||.+++++... ++..++.         ..|..+.  ...-+...++.+.++          +..-.+.
T Consensus       193 SK~TGHAGSR~GWAlVKD~~Va~kM~~y~~---------lnTiGvS~dsQLRa~kiLk~v~~~~~~~~~~~~~F~f~~~~  263 (363)
T PF04864_consen  193 SKLTGHAGSRFGWALVKDEEVAKKMTKYME---------LNTIGVSRDSQLRALKILKVVLDGYGTEKGTEDIFHFGYST  263 (363)
T ss_dssp             HHHCS-GGG-EEEEEES-HHHHHHHHHHHH---------HHCSS--HHHHHHHHHHHHHHHHHCCHHTTTTSHHHHHHHH
T ss_pred             ecccCccccccceeeecCHHHHHHHHHHHH---------HhcccCcHHHHHHHHHHHHHHHhcccCCCCccchHHHHHHH
Confidence            99776444  999999986332 2222221         0122222  122222233333322          1222334


Q ss_pred             HHHHHHHHHHHHhhcCCCeEEeCCCC----------CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChh
Q 040741          322 ITALHDRLLNGIKEKLDGVVVNGSME----------RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       322 ~~~~~~~l~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      .++.-++|++.+.. ...+.+..-..          .+.|.+..+..+..+..+....|  .+|..++|..+        
T Consensus       264 M~~RW~~L~~~~~~-S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~eed~DC~~~l~~~~I~tr~G~~f--------  334 (363)
T PF04864_consen  264 MRERWEKLRAAVSA-SKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCEREEDEDCYAVLREAKIITRSGVLF--------  334 (363)
T ss_dssp             HHHHHHHHHHHHCC-SSSEEE---SCEEETTTTCEEE---SEEEEEESSCGGSSHHHHHHCTTEEEEEGGGG--------
T ss_pred             HHHHHHHHHHHHHh-cCceecCcCCchhccccccccCCCCCeEEEecCCcccccHHHHHHhCCcccCCCCcc--------
Confidence            44445555666665 45555543211          11244333333322334555555  58888888654        


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                            |.+.    +++|+++-.  ++++.|.++++|..
T Consensus       335 ------ga~~----ryVRlSml~--~~d~Fd~l~~rL~~  361 (363)
T PF04864_consen  335 ------GADS----RYVRLSMLK--RDDDFDQLLERLSK  361 (363)
T ss_dssp             ------TS-T----TEEEEESSS---HHHHHHHHHHHHC
T ss_pred             ------CCCC----CeEEEeccC--CHHHHHHHHHHHHh
Confidence                  3232    899999865  78999999999875

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=98.38  E-value=6.1e-06  Score=76.83  Aligned_cols=207  Identities=19%  Similarity=0.200  Sum_probs=120.2

Q ss_pred             CHHHHHHhcCC------CceEEEEecccccccccc--C--hHHHHHHHHhcCCcEEEehhhhcCCCccc---CC----CC
Q 040741          185 NLDELRAAIRP------DTGLISVMAVNNEIGVIQ--P--MEEIGQICKEFKIPFHTDAAQALGKIPVD---VE----KW  247 (457)
Q Consensus       185 d~~~le~~i~~------~t~li~i~~~~~~~G~~~--~--l~~i~~l~~~~~v~li~D~a~~~g~~~~~---~~----~~  247 (457)
                      +++++|++|..      ..+.++++.++++.|--.  |  ...+.+++++|++.+|+|++|..|...-.   ..    +.
T Consensus       254 Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~  333 (484)
T KOG1405|consen  254 CLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDS  333 (484)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCC
Confidence            56778877742      235788899998877443  2  88999999999999999999975433111   11    12


Q ss_pred             cccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          248 NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       248 ~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      .+|++.+|  |-|-..  |+ +-+++.+- -+++..       +......+.-..-+...++.+..  +.+.+......+
T Consensus       334 PpD~vTFS--KK~q~g--Gf-fh~~~frp-n~pYri-------fNTWmGdP~k~lll~~vv~~I~~--~~Ll~n~~~vG~  398 (484)
T KOG1405|consen  334 PPDVVTFS--KKFQTG--GF-FHDEEFRP-NEPYRI-------FNTWMGDPSKNLLLEEVVQEIKR--EDLLNNVAHVGK  398 (484)
T ss_pred             Cccceehh--hhhhcC--cc-ccCcccCC-CchHHH-------hhhhcCChHHHHHHHHHHHHHhH--HHHHHHHHHHHH
Confidence            46888776  744433  32 23332221 122221       11123333444445556666665  566667777777


Q ss_pred             HHHHHHhh---cCCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741          328 RLLNGIKE---KLDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM  401 (457)
Q Consensus       328 ~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~  401 (457)
                      ++.++|.+   .+|+..-..   ...+.++.+.++..+ .+.++..+  .|+.+- |  |.                   
T Consensus       399 ~l~~gL~~Lq~~~p~~~~~~---RGrGTF~a~d~ps~~~Rdk~i~~~~~nGv~~G-G--Cg-------------------  453 (484)
T KOG1405|consen  399 ALLKGLLELQAKYPGKINNL---RGRGTFIAWDCPSGSIRDKLILIARLNGVNLG-G--CG-------------------  453 (484)
T ss_pred             HHHHHHHHHHHhCchhhhcc---cccceEEEEeCCChHHHHHHHHHHHHcCceec-c--cc-------------------
Confidence            77776654   244432111   112444434433221 12333333  555432 2  22                   


Q ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                       ...|||-++...++.+.+-+++++.+.++.
T Consensus       454 -~~siRfRPsLvf~~~Ha~i~l~~~~k~l~~  483 (484)
T KOG1405|consen  454 -DKSIRFRPSLVFRKHHADIFLDIFDKILAG  483 (484)
T ss_pred             -cceeeeccceeehhhhHHHHHHHHHHHhcc
Confidence             278999999988889999999999988764

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=98.12  E-value=9e-06  Score=72.78  Aligned_cols=178  Identities=21%  Similarity=0.257  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHHhCCCC-CcEEEeCChH-HHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEe
Q 040741          101 VAVETARSQIADLIGASP-KEIIFTSGAT-ESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLP  177 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~-~~i~~t~g~T-~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~  177 (457)
                      ....++....-.+.|+.. .+++.++=+| +++.+.+.++..  +.|+ ..|+..+....+....+-.+   |++++.+.
T Consensus        57 ~isne~a~~~i~l~glhav~nc~vvpl~tgmslslc~~s~r~--krpkakyiiw~ridqks~~ksi~~a---gfepiiie  131 (432)
T KOG3843|consen   57 CISNEFAKDAIHLAGLHAVANCFVVPLATGMSLSLCFLSLRH--KRPKAKYIIWLRIDQKSCFKSIIHA---GFEPIIIE  131 (432)
T ss_pred             HHHHHHHHHHHHHhhhhhhhceeEEeccccccHHHHHHHHhh--cCCcccEEEEEecchHHHHHHHHhc---CCCceeee
Confidence            344455566666777753 3455554443 456666666553  2333 45677788888888887776   99988876


Q ss_pred             CCCCC---CCCHHHHHHhcCCC-c-eEEEEeccccccc--cccChHHHHHHHHhcCCcEEEehhhhcCCCc------ccC
Q 040741          178 VGADG---IVNLDELRAAIRPD-T-GLISVMAVNNEIG--VIQPMEEIGQICKEFKIPFHTDAAQALGKIP------VDV  244 (457)
Q Consensus       178 ~~~~~---~~d~~~le~~i~~~-t-~li~i~~~~~~~G--~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~------~~~  244 (457)
                      .--+|   ..|++.+++.+.+. . .++|+....+-..  +...+++|..+|..|+++-++..||++-+..      ...
T Consensus       132 ~i~d~d~l~tdleav~~~iee~g~dcilci~sttscfapr~pd~leaiaaica~~diphivnnayglqsee~i~~iaa~~  211 (432)
T KOG3843|consen  132 NILDGDELITDLEAVEAIIEELGEDCILCIHSTTSCFAPRSPDNLEAIAAICAAHDIPHIVNNAYGLQSEECIHKIAAAA  211 (432)
T ss_pred             ccccchHHHHhHHHHHHHHHHhCCceEEEEeecccccCCCCCchHHHHHHHHHccCchhhhccccccchHHHHHHHHHHh
Confidence            43222   56889999888653 3 3555543322122  2233999999999999999999999864321      111


Q ss_pred             CCCcccEEEecccc-ccCCCCceEEEE--ecCCCccccccccC
Q 040741          245 EKWNVSLMSLSGHK-IYGPKGVGALYM--RRRPRIRVEPLING  284 (457)
Q Consensus       245 ~~~~~Di~~~s~~K-~~g~~G~G~l~~--~~~~~~~~~~~~~~  284 (457)
                      .-..+|.++-|+.| +.-|-| |+++.  ++..+..+...+.|
T Consensus       212 ~~grida~vqsldknf~vpvg-gaiia~fk~n~iq~iak~ypg  253 (432)
T KOG3843|consen  212 ECGRIDAFVQSLDKNFMVPVG-GAIIAAFKDNFIQEIAKMYPG  253 (432)
T ss_pred             hhccHHHHHHHhhhcceeecc-hhHhhHhHHHHHHHHHHhCCC
Confidence            12247899999999 455776 44442  22333444444443

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.97  E-value=0.00013  Score=68.00  Aligned_cols=325  Identities=16%  Similarity=0.115  Sum_probs=177.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCChHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GAS-----PKEIIF--TSGATES  130 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~~-----~~~i~~--t~g~T~a  130 (457)
                      .|=|-.+-..+-+.|.+|-.+......        .-.|..-....++.+..+++. |..     .+.++.  |-|||.|
T Consensus        61 aYRdd~gKp~vL~~VrkAE~ql~~~~l--------dKEYlpI~Gl~eF~k~sakLa~G~~s~~ik~~Ri~tvQ~lSGTGa  132 (427)
T KOG1411|consen   61 AYRDDNGKPYVLPSVRKAEQQLASLSL--------DKEYLPITGLAEFNKLSAKLALGDNSPVIKEKRIVTVQTLSGTGA  132 (427)
T ss_pred             ceecCCCCeeeeHHHHHHHHHHhhhcc--------cchhccccchHHHHHHHHHHhhcCCchhhhccceeEEEeccCcch
Confidence            444555555566777777665543111        001222235566667777764 321     123433  4459999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcC---CCceEEEEecc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIR---PDTGLISVMAV  205 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~---~~t~li~i~~~  205 (457)
                      +.++...+..|+  ++..|.++.++.....+....+   |+.+.++.-  +.+..+|.+-+.+.+.   +...+++-...
T Consensus       133 Lriga~Fl~~f~--~~~~I~ip~PTWgNh~~if~~a---g~~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCa  207 (427)
T KOG1411|consen  133 LRVGAEFLARFY--PSRDIYIPDPTWGNHKNIFKDA---GLPVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACA  207 (427)
T ss_pred             hhHHHHHHHhhc--cccceeecCCcccccCcccccc---CcceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhh
Confidence            999888887775  4788999998877766555554   887755432  2334466655444443   23345666777


Q ss_pred             ccccccc---cChHHHHHHHHhcCCcEEEehhhh-cCCCcccCCC--------Ccc-cEEEeccccccCCCC--ceEE--
Q 040741          206 NNEIGVI---QPMEEIGQICKEFKIPFHTDAAQA-LGKIPVDVEK--------WNV-SLMSLSGHKIYGPKG--VGAL--  268 (457)
Q Consensus       206 ~~~~G~~---~~l~~i~~l~~~~~v~li~D~a~~-~g~~~~~~~~--------~~~-Di~~~s~~K~~g~~G--~G~l--  268 (457)
                      |||||+-   ..|++|.++.++.+.+-+.|.|+- +.+-.++-+.        .+. -+++-|+.|-.|.-|  +|.+  
T Consensus       208 HNPTGvDPt~eqw~ki~~~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~sv  287 (427)
T KOG1411|consen  208 HNPTGVDPTKEQWEKISDLIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSV  287 (427)
T ss_pred             cCCCCCCccHHHHHHHHHHhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEE
Confidence            8999965   348899999999999999999874 3222222211        122 356779999544322  4444  


Q ss_pred             -EEecCCCccccccccCCccccccccCCCChhHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          269 -YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC------EIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       269 -~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                       +-+.+...+++....-  ..+.. +..||..+..-....+      +....++.-+.+++...++.+.+.|++  ++..
T Consensus       288 vc~~ad~A~rV~SQlk~--liRpm-YSnPP~hGArIv~~Il~d~~l~~~W~~evk~MadRi~~mR~~L~d~L~~--~gs~  362 (427)
T KOG1411|consen  288 VCKDADEAKRVESQLKI--LIRPM-YSNPPLHGARIVATILSDPDLKNQWLGEVKGMADRIISMRQQLFDALEK--EGSP  362 (427)
T ss_pred             EecCHHHHHHHHHHHHH--Hhccc-ccCCCccchhhhhhccCChHHHHHHHHHHHHHHHhhhhhHHHHhHHhhc--CCCC
Confidence             3222233333221110  00111 1234433222111111      111224677788888888888888887  3322


Q ss_pred             EeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          342 VNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      .  +-.....-+-.|+|.+..+++.-...  ..|...                           .--||+++..+ ...+
T Consensus       363 ~--~W~hI~~QIGMF~fTgl~peQv~~l~ke~~iYmT---------------------------~dGRiS~aG~s-s~nV  412 (427)
T KOG1411|consen  363 G--NWSHITKQIGMFCFTGLNPEQVDWLTKEYHIYLT---------------------------KDGRISMAGLS-SSNV  412 (427)
T ss_pred             c--cHHHHHHhhheeeecCCCHHHHHHHHhhheeeec---------------------------cCceEeecccc-ccCC
Confidence            1  10000011113566666665543332  334332                           22377777644 4678


Q ss_pred             HHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVE  431 (457)
Q Consensus       420 d~~~~~l~~~~~  431 (457)
                      ++++++|.++.+
T Consensus       413 ~yLa~aih~vtk  424 (427)
T KOG1411|consen  413 PYLADAIHAVTK  424 (427)
T ss_pred             cccchhhHhHhc
Confidence            888888876654

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.36  E-value=0.0011  Score=56.33  Aligned_cols=54  Identities=15%  Similarity=0.186  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHhC----CCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcc
Q 040741          101 VAVETARSQIADLIG----ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKC  158 (457)
Q Consensus       101 ~~~~~~~~~la~~~g----~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~  158 (457)
                      +..+.+.+.+.+..|    +++++|++|+|++.|+.+++.+++    ++||.|+++.+.|++
T Consensus        96 ~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l~----dpGD~VlVp~P~Y~~  153 (153)
T PLN02994         96 NFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCIA----DPGDAFLVPTPYYAA  153 (153)
T ss_pred             HHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHHc----CCCCEEEEeCCCCCC
Confidence            344445555555545    467889999999999999999999    899999999998863

>KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism]

Probab=96.60  E-value=0.0064  Score=61.54  Aligned_cols=354  Identities=16%  Similarity=0.150  Sum_probs=185.3

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHh-hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYL-SRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~  136 (457)
                      |+|+.+.+...+.-.+....... ....|||+ ...-+......+...|-++..+++-.  ..+++|+. .|+|+.+.+.
T Consensus        23 yldhag~tl~sesq~~g~~~~sq~~e~~nphs-~~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp~-~t~al~~vae  100 (728)
T KOG2142|consen   23 YLDHAGRTLFSESQLEGVAFQSQSSENANPHS-HLGTSRSLARLVAQVRLRILALFNTTAFDYEVSLPA-LTEALKLVAE  100 (728)
T ss_pred             HHHhhhhhhhhhcccchhhhhhhccccCCCcc-cccchHHHHHHHHHHHHHHHHHhccccccccchhHH-HHHHHHHHHH
Confidence            99999999888887777555443 34457775 34445555677777888888888864  33588988 9999999888


Q ss_pred             HhhhhhcCCC---CEEEEcCCCCcchHHHHHHHHhcCcEEEEE-eCC---CCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          137 GVMHFYKDKK---RHVITTQTEHKCVLDSCRHLQQEGFEITYL-PVG---ADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       137 ~~~~~~~~~g---~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v-~~~---~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      ++..+  ..+   +.+=.....|-+.....-.....|+.+.-+ ..+   .....++.+...-+ ....+.+.....|..
T Consensus       101 ~fp~~--s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~l-s~~~L~~g~a~~nfe  177 (728)
T KOG2142|consen  101 AFPFY--SQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANL-SEHSLFGGAAQSNFE  177 (728)
T ss_pred             hCccc--cccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccCc-ccchhcccchhcccc
Confidence            77643  233   333344444544432111111113333222 211   11111221111111 134566666666666


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccc-
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQE-  288 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~-  288 (457)
                      |..+....+-.+.-..+-++++|+|.-..+.+++...+.+|+... +.|+||.+. |++.+.++..+..     |++.. 
T Consensus       178 g~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy~f~~~~~-lltiFgyet-gAvlv~~r~A~~~-----Ggkt~s  250 (728)
T KOG2142|consen  178 GDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESYPFDFNPK-LLTIFGYET-GAVLVMNRSAELK-----GGKTAS  250 (728)
T ss_pred             cceeeeeeecccccCCceEEEEEeecccccccchHhhCCCcccch-heeecCCCc-hhhHHHhhhhHhh-----cCccce
Confidence            664322222222234578899999998888899998899999999 999999774 6666654432222     32221 


Q ss_pred             ----------------cccccCCCChhHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHhhc---CCCeEEeCC-
Q 040741          289 ----------------RGIRSGTLPTPLIVGFGSACEIAK---KEMDYDHKRITALHDRLLNGIKEK---LDGVVVNGS-  345 (457)
Q Consensus       289 ----------------~~~~~~t~~~~~~~al~~al~~~~---~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~-  345 (457)
                                      +++..|+.+.-.++++...+....   .++..+......+++++.-.|..-   -|.+.+++. 
T Consensus       251 a~f~wp~~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al~~~whvlLda~~lG~kdmd~yglS  330 (728)
T KOG2142|consen  251 AEFSWPMLYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLALANNWHVLLDALALGPKDMDSYGLS  330 (728)
T ss_pred             eecccchHHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHHhhhHHHHHhhhccCcchHhhhhhh
Confidence                            222333433333332222221111   124444455556666666666541   011222211 


Q ss_pred             ---CCCcccceEEEEEccccchH----H--HhcccCeEecccCccCCCCCC--hhH----HHH---H-cCCCccCCCCeE
Q 040741          346 ---MERRYIGNLNLSFAYVEGES----L--LMGLKEVAVSSGSACTSASLE--PSY----VLR---A-LGVDEDMAHTSI  406 (457)
Q Consensus       346 ---~~~~~~~~~~~~~~~~~~~~----~--~~~l~~i~~~~g~~~~~~~~~--~~~----~l~---~-~g~~~~~~~~~i  406 (457)
                         |+ ...+.+.+.+...++.-    .  -..+.++..++|.+|.++-.+  |..    ...   + .|..+..+..  
T Consensus       331 ~f~Pd-fqg~sf~fv~g~d~psgfGcl~VkKs~i~~l~lrtGcfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~dg~~--  407 (728)
T KOG2142|consen  331 LFQPD-FQGPSFYFVFGRDDPSGFGCLEVKKSAISGLELRTGCFCNIGACKIYPGLYLEMSQKGLSAGKGCGDNDGQP--  407 (728)
T ss_pred             ccCcc-ceeeeEEEEeccCCCCceeeeeeehhhhhceeccCCCCCCCcceeecccccHHHHHHHhhhccccccCCCCc--
Confidence               11 11233334443221210    1  112578999999998765332  211    111   1 1111111222  


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~  430 (457)
                       ++ ++..+.++++..+.++.+-+
T Consensus       408 -~s-~~~~~~~~~~a~~~~~v~~~  429 (728)
T KOG2142|consen  408 -VS-GYMQTPADVGAYLSAQVSDV  429 (728)
T ss_pred             -cc-ccccchhhhhHHHHHhhhhh
Confidence             44 56677889988888776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	457
1p3w_B	404	X-Ray Crystal Structure Of E. Coli Iscs Length = 40		1e-143
3lvj_A	423	Crystal Structure Of E.Coli Iscs-Tusa Complex (Form		1e-143
4eb5_A	382	A. Fulgidus Iscs-Iscu Complex Structure Length = 38		7e-83
1ecx_A	384	Nifs-Like Protein Length = 384		5e-77
3vax_A	400	Crytal Structure Of Dnda From Streptomyces Lividans		6e-76
1eg5_A	384	Nifs-like Protein Length = 384		2e-74
3gzc_A	440	Structure Of Human Selenocysteine Lyase Length = 44		8e-57
3a9x_A	432	Crystal Structure Of Rat Selenocysteine Lyase Lengt		8e-56
3gzd_A	440	Human Selenocysteine Lyase, P1 Crystal Form Length		2e-55
4ixo_A	380	X-ray Structure Of Nifs-like Protein From Rickettsi		3e-40
1c0n_A	406	Csdb Protein, Nifs Homologue Length = 406		1e-22
1i29_A	406	Crystal Structure Of Csdb Complexed With L-Propargy		2e-22
1jf9_A	408	Crystal Structure Of Selenocysteine Lyase Length =		2e-22
1kmj_A	406	E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE		6e-22
1t3i_A	420	Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De		4e-21
1elq_A	390	Crystal Structure Of The Cystine C-S Lyase C-Des Le		8e-08
1n2t_A	386	C-Des Mutant K223a With Gly Covalenty Linked To The		4e-07
3mbb_A	514	Crystal Structure Of Stspl - Apo Form, After Treatm		1e-06
3maf_B	518	Crystal Structure Of Stspl (Asymmetric Form) Length		1e-06
3maf_A	518	Crystal Structure Of Stspl (Asymmetric Form) Length		5e-06
3mau_A	514	Crystal Structure Of Stspl In Complex With Phosphoe		5e-06
3mad_A	514	Crystal Structure Of Stspl (Symmetric Form) Length		5e-06
1vjo_A	393	Crystal Structure Of Alanine--Glyoxylate Aminotrans		8e-06
3f9t_A	397	Crystal Structure Of L-tyrosine Decarboxylase Mfna		4e-05
3nnk_A	411	Biochemical And Structural Characterization Of A Ur		6e-05
2dr1_A	386	Crystal Structure Of The Ph1308 Protein From Pyroco		6e-04
2ch1_A	396	Structure Of Anopheles Gambiae 3-Hydroxykynurenine		6e-04

>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs Length = 404

Iteration: 1
 Score =  504 bits (1298), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/402 (58%), Positives = 316/402 (78%), Gaps = 3/402 (0%)
Query: 58  PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
           P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+G
Sbjct: 4   PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 63
Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
           A P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TY
Sbjct: 64  ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 123
Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           L    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q
Sbjct: 124 LAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 183
Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
           ++GK+P+D+ +  V LMS SGHKIYGPKG+GALY+RR+PR+R+E  ++GGG ERG+RSGT
Sbjct: 184 SVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 243
Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
           LP   IVG G A  IAK+EM  + +R+  L +RL NGIK+ ++ V +NG +E      LN
Sbjct: 244 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILN 302
Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           +SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFTT
Sbjct: 303 VSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 362
Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           E E+D  IEL  K + +LR++SPL+EM K+G+D+  I+WA H
Sbjct: 363 EEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 404

>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1) Length = 423

Iteration: 1
 Score =  504 bits (1298), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/402 (58%), Positives = 316/402 (78%), Gaps = 3/402 (0%)
Query: 58  PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
           P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+G
Sbjct: 23  PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 82
Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
           A P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TY
Sbjct: 83  ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 142
Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           L    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q
Sbjct: 143 LAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 202
Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
           ++GK+P+D+ +  V LMS SGHKIYGPKG+GALY+RR+PR+R+E  ++GGG ERG+RSGT
Sbjct: 203 SVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 262
Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
           LP   IVG G A  IAK+EM  + +R+  L +RL NGIK+ ++ V +NG +E      LN
Sbjct: 263 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILN 321
Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           +SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFTT
Sbjct: 322 VSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 381
Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           E E+D  IEL  K + +LR++SPL+EM K+G+D+  I+WA H
Sbjct: 382 EEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423

>pdb|4EB5|A Chain A, A. Fulgidus Iscs-Iscu Complex Structure Length = 382

Iteration: 1
 Score =  304 bits (778), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 159/383 (41%), Positives = 249/383 (65%), Gaps = 7/383 (1%)
Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           Y D  +  PVD R+L+AMLP+    +GNP S  H +G+++  AV+ AR ++A L+     
Sbjct: 3   YFDYTSAKPVDERILEAMLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGGG 61
Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
            ++FTSGATE+NN++I G       K +H++ +  EH  V++  + LQ++GFE+ Y+PVG
Sbjct: 62  TVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVG 121
Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
             G V++  +   +R DT L+SV   NNEIG IQP+EEI ++    K   H DA  ++G+
Sbjct: 122 KYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAG-KAALHIDATASVGQ 180
Query: 240 IPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP 299
           I VDVEK    ++++S + IYGPKGVGAL++R+  ++  +P+I GGGQE G+RSG+   P
Sbjct: 181 IEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKL--QPVILGGGQENGLRSGSENVP 238
Query: 300 LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA 359
            IVGFG A EI   E   + +R+  L DR+++ +  K++   +NG  E+R   N+N+ F+
Sbjct: 239 SIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL-KIEESYLNGHPEKRLPNNVNVRFS 297
Query: 360 YVEGESLLMGLKEVAV--SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA 417
           Y+EGES+++ L    +  S+GSAC+S +L+PS+VL A G+  + AH ++   +GR+ T+ 
Sbjct: 298 YIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDE 357
Query: 418 EVDRAIELTVKQVEKLREMSPLY 440
           +VDR +E+    +E+LR MSPLY
Sbjct: 358 DVDRLLEVLPGVIERLRSMSPLY 380

>pdb|1ECX|A Chain A, Nifs-Like Protein Length = 384

Iteration: 1
 Score =  285 bits (728), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 158/366 (43%), Positives = 226/366 (61%), Gaps = 9/366 (2%)
Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           +Y D  ATT VD RVL+ M+ FY  +YGNP+S  H  G E+ + +E AR ++A ++G SP
Sbjct: 3   VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSP 61
Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
            EI FTS ATES N  +K V   ++ +KR +ITT  EHK VL++ ++L  +GF++ Y+PV
Sbjct: 62  SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPV 121
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQA 236
            + G+V L+EL   +  DT L+S+MA NNE+G IQP+E++ +I K+   +   H DA Q 
Sbjct: 122 DSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181
Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP  +EK  V   S S HK +GPKGVG  Y+R+   IR  PLI+GGGQERG+RSGT 
Sbjct: 182 IGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQ 239
Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             P IVG   A EIA +E+    K +  L  +L++G+     G  +   +E      L++
Sbjct: 240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAHIITPLEISLPNTLSV 297
Query: 357 SFAYVEGESL--LMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
           SF  + G +L  L+    + VS+ SACTS      +VL A+GVD  +A  +IR  + ++ 
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYN 357
Query: 415 TEAEVD 420
           TE EVD
Sbjct: 358 TEEEVD 363

>pdb|3VAX|A Chain A, Crytal Structure Of Dnda From Streptomyces Lividans Length = 400

Iteration: 1
 Score =  281 bits (719), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 165/382 (43%), Positives = 229/382 (59%), Gaps = 14/382 (3%)
Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLD  ATT VD RV D +L +  + +GN  SR H +G  ++  VE AR  +A  + A P 
Sbjct: 23  YLDAAATTRVDQRVADIVLHWMTAEFGNAGSR-HEYGIRAKRGVERAREYLASTVSAEPD 81
Query: 120 EIIFTSGATESNNVSIKGVMHF-YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
           E+IFTSGATESNN+++ G+  +  +  +RH+IT+  EHK VL+   HL   GFE+ +L  
Sbjct: 82  ELIFTSGATESNNIALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTP 141
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
           G  G ++++ +   +RPDT L+S+M VNNE GVIQP+ E+ Q  +      H DAAQ  G
Sbjct: 142 GPSGRISVEGVMERLRPDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYG 201
Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRR-----PRIRVEPLINGGGQERGIRS 293
           K+P D+    + ++S+SGHKI  PKGVGAL  RRR      R+ +EP++ GGGQER +R 
Sbjct: 202 KVPGDLTT-PIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRP 260
Query: 294 GTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN 353
           GTLP PLI+G   A +I + E          L  RLL G+        VNG  +      
Sbjct: 261 GTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLAST--SFQVNGDQDHVVPHI 318
Query: 354 LNLSFAYVEGESLLMGLKE-VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR 412
           LNLSF  V+ E+ L+ LK+ VAV++GSA TSAS  PS+VLRA+G+ E+ A  S+RF    
Sbjct: 319 LNLSFEDVDAEAFLVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS--- 375
Query: 413 FTTEAEVDRAIELTVKQVEKLR 434
           +T     D  +E   + V KL+
Sbjct: 376 WTPGQATDLDVEELARGVAKLK 397

>pdb|1EG5|A Chain A, Nifs-like Protein Length = 384

Iteration: 1
 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 156/366 (42%), Positives = 221/366 (60%), Gaps = 9/366 (2%)
Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           +Y D  ATT VD RVL+  + FY  +YGNP+S  H  G E+ +  E AR ++A ++G SP
Sbjct: 3   VYFDNNATTRVDDRVLEEXIVFYREKYGNPNS-AHGXGIEANLHXEKAREKVAKVLGVSP 61
Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
            EI FTS ATES N  +K V   ++ +KR +ITT  EHK VL++ ++L  +GF++ Y+PV
Sbjct: 62  SEIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETXKYLSXKGFKVKYVPV 121
Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQA 236
            + G+V L+EL   +  DT L+S+ A NNE+G IQP+E++ +I K+   +   H DA Q 
Sbjct: 122 DSRGVVKLEELEKLVDEDTFLVSIXAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQT 181
Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL 296
           +GKIP  +EK  V   S S HK +GPKGVG  Y+R+   IR  PLI+GGGQERG+RSGT 
Sbjct: 182 IGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQ 239
Query: 297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL 356
             P IVG   A EIA +E+    K    L  +L++G+     G  +   +E      L++
Sbjct: 240 NVPGIVGAARAXEIAVEELSEAAKHXEKLRSKLVSGLXNL--GAHIITPLEISLPNTLSV 297
Query: 357 SFAYVEGESL--LMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
           SF  + G +L  L+    + VS+ SACTS      +VL A GVD  +A  +IR  + ++ 
Sbjct: 298 SFPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAXGVDRRIAQGAIRISLCKYN 357
Query: 415 TEAEVD 420
           TE EVD
Sbjct: 358 TEEEVD 363

>pdb|3GZC|A Chain A, Structure Of Human Selenocysteine Lyase Length = 440

Iteration: 1
 Score =  218 bits (554), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 142/418 (33%), Positives = 217/418 (51%), Gaps = 39/418 (9%)
Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           R +Y+D  ATTP++P V+ AM       +GNP S  +  G +++  +  AR  +A +IG 
Sbjct: 25  RKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGG 83
Query: 117 SPKEIIFTSGATESNNVSIKGVM-HFY----------------KDKKRHVITTQTEHKCV 159
            P++IIFTSG TESNN+ I  V+ HF+                K  K H IT+  EH  +
Sbjct: 84  KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSI 143
Query: 160 LDSCRHLQQEGFE-ITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
                HL +E    +T++PV    G   +D++ AA+RP T L+++M  NNE G++ P+ E
Sbjct: 144 RLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPE 203
Query: 218 IGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
           I Q  K             I  HTDAAQALGK  VDVE   V  +++ GHK YGP+ +GA
Sbjct: 204 ISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGA 262
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326
           LY+R       + P++ GGGQER  R GT  TP+I G G A E+  +  +     +  + 
Sbjct: 263 LYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVR 322
Query: 327 DRLLNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSA 380
           D L   ++ +     ++      G+       N ++    ++G  +L   + +  S G+A
Sbjct: 323 DYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAA 382
Query: 381 CTS-ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMS 437
           C S    +PS VL + GV  D+A  ++R  +GR TT AEVD  ++   + V +L + +
Sbjct: 383 CHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLEDQA 440

>pdb|3A9X|A Chain A, Crystal Structure Of Rat Selenocysteine Lyase Length = 432

Iteration: 1
 Score =  214 bits (545), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 142/421 (33%), Positives = 224/421 (53%), Gaps = 54/421 (12%)
Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           R +Y+D  ATTP++P V+ A+       +GNP S +++ G +++  + TAR+ +A +IG 
Sbjct: 18  RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGG 76
Query: 117 SPKEIIFTSGATESNNVSIKGVMHFYKDKKR-----------------HVITTQTEHKCV 159
            P++IIFTSG TESNN+ I   +  + +++                  H IT   EH  +
Sbjct: 77  KPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSI 136
Query: 160 LDSCRHLQQEGF-EITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
                HL ++   E+T++PV   +G V ++++ AA+RP T L+++M  NNE GVI P+ E
Sbjct: 137 RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISE 196
Query: 218 IGQICKEF----------KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
           I +  K            ++  HTDAAQALGK  VDVE   V  +++ GHK YGP+ +GA
Sbjct: 197 ISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGA 255
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSA-------CEIAKKEM---- 315
           LY+R   ++  + P++ GGGQER  R GT  TP+I G G A       CE  +  M    
Sbjct: 256 LYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIR 315
Query: 316 DYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF--AYVEGESLLMGLKEV 373
           DY  +R+ A   + ++ +  +  GV        R     N S   + + G  +L   + +
Sbjct: 316 DYLEERLEAEFGKRIH-LNSRFPGV-------ERLPNTCNFSIQGSQLRGYMVLAQCQTL 367
Query: 374 AVSSGSACTSASLE-PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432
             S G++C S   + PS VL + G+  D+A  ++R  +GR TT AEVD  ++   + V +
Sbjct: 368 LASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ 427
Query: 433 L 433
           L
Sbjct: 428 L 428

>pdb|3GZD|A Chain A, Human Selenocysteine Lyase, P1 Crystal Form Length = 440

Iteration: 1
 Score =  213 bits (542), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 141/418 (33%), Positives = 216/418 (51%), Gaps = 39/418 (9%)
Query: 57  RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA 116
           R +Y+D  ATTP++P V+ AM       +GNP S  +  G +++  +  AR  +A +IG 
Sbjct: 25  RKVYMDYNATTPLEPEVIQAMTKAMWEAWGNP-SSPYSAGRKAKDIINAARESLAKMIGG 83
Query: 117 SPKEIIFTSGATESNNVSIKGVM-HFY----------------KDKKRHVITTQTEHKCV 159
            P++IIFTSG TESNN+ I  V+ HF+                K  K H IT+  EH  +
Sbjct: 84  KPQDIIFTSGGTESNNLVIHSVVKHFHANQTSKGHTGGHHSPVKGAKPHFITSSVEHDSI 143
Query: 160 LDSCRHLQQEGFE-ITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE 217
                HL +E    +T++PV    G   +D++ AA+RP T L+++M  NNE G++ P+ E
Sbjct: 144 RLPLEHLVEEQVAAVTFVPVSKVSGQTEVDDILAAVRPTTRLVTIMLANNETGIVMPVPE 203
Query: 218 IGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGA 267
           I Q  K             I  HTDAAQALGK  VDVE   V  +++ GHK YGP+ +GA
Sbjct: 204 ISQRIKALNQERVAAGLPPILVHTDAAQALGKQRVDVEDLGVDFLTIVGHKFYGPR-IGA 262
Query: 268 LYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH 326
           LY+R       + P++ GGGQER  R GT  TP+I G G A E+  +  +     +  + 
Sbjct: 263 LYIRGLGEFTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAAELVTQNCEAYEAHMRDVR 322
Query: 327 DRLLNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSA 380
           D L   ++ +     ++      G+       N ++    ++G  +L   + +  S G+A
Sbjct: 323 DYLEERLEAEFGQKRIHLNSQFPGTQRLPNTCNFSIRGPRLQGHVVLAQCRVLMASVGAA 382
Query: 381 CTS-ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMS 437
             S    +PS VL + GV  D+A  ++R  +GR TT AEVD  ++   + V +L + +
Sbjct: 383 XHSDHGDQPSPVLLSYGVPFDVARNALRLSVGRSTTRAEVDLVVQDLKQAVAQLEDQA 440

>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia Africae Esf-5 Length = 380

Iteration: 1
 Score =  162 bits (411), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 204/389 (52%), Gaps = 28/389 (7%)
Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
           +YLD  ATT +DPRV + ++   + +  NP S  H  G  ++  +ET R+QIA  +G + 
Sbjct: 10  IYLDHNATTFIDPRVKEFIISL-MDKELNP-SSAHSSGRFAKNLIETVRAQIATALGITL 67
Query: 119 K----EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
                +I FTS  TE NN+ +K   +FY      +  +  EH  + +   +       I 
Sbjct: 68  SSREYDITFTSSGTEGNNLIMK---NFYDGD---IFISAIEHLSIYNHINYAPN----IK 117
Query: 175 YLPVGADGIVNLD---ELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231
            + V   G+V+L+   EL A       L+S++  NNE GV+Q + EIG+I K+++  FH+
Sbjct: 118 VISVNTQGLVDLEHLEELLAQSNTSKKLVSIIMANNESGVLQDIAEIGKITKKYEAKFHS 177
Query: 232 DAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGI 291
           D  Q  G+IP++++   +   ++SGH I G +G  AL        ++ P+I GGGQE+ +
Sbjct: 178 DLVQGFGRIPINIKALGLDFATISGHXIGGGQGGAALI--SSSNFQITPMIIGGGQEKSV 235
Query: 292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI 351
           RSGT     I GFG A  +    +  ++ +I  L + L   +K+  +  +V+ ++ R   
Sbjct: 236 RSGTENVLAIAGFGLASALRTDNISENYIKIKKLQENLEKKLKKYPNVNIVSNNVARLPN 295
Query: 352 GNLNLSFAYVEGESLLMG--LKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG 409
             L ++    + ++ L+G  L  + VSSGSAC+S  +  S+VL  +GV E+ A +SIR  
Sbjct: 296 TTL-ITIPNTDAQAKLIGFDLHNICVSSGSACSSGKISKSHVLTNMGVGEEEAKSSIRIS 354
Query: 410 IGRFTTEAEVDRAIELTVKQVEKLREMSP 438
           +    T     R IE  ++  E++ ++ P
Sbjct: 355 LSHTNTV----RDIEAFIEAFEEIYDVIP 379

>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 163/397 (41%), Gaps = 47/397 (11%)
Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H+  H    ++   +E  R + + 
Sbjct: 19  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHAGAHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A S +E++F  G TE  N+      +       ++I +Q EH   +   + L  + G
Sbjct: 79  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L       T L+++  V+N +G   P+ E+  +  +      
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDAATRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
            D AQA+   PVDV+  +      SGHK+YGP G+G LY++      + P   GG     
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
           +                +GT  T  I+G G+A E         IA+ E +  H  ++ L 
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 317
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
                   E +  + + G   R  +   NL   +       +    +AV +G  C +  L
Sbjct: 318 --------ESVPDLTLYGPQARLGVIAFNLGAHHAYDVGSFLDNYGIAVRTGHHC-AMPL 368
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
              Y + A+           R  +  + T  EVDR +
Sbjct: 369 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 395

>pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 47/397 (11%)
Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H   H    ++   +E  R + + 
Sbjct: 19  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A S +E++F  G TE  N+      +       ++I +Q EH   +   + L  + G
Sbjct: 79  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L       T L+++  V+N +G   P+ E+  +  +      
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
            D AQA+   PVDV+  +      SGHK+YGP G+G LY++      + P   GG     
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
           +                +GT  T  I+G G+A E         IA+ E +  H  ++ L 
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 317
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
                   E +  + + G   R  +   NL   +       +    +AV +G  C +  L
Sbjct: 318 --------ESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHC-AMPL 368
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
              Y + A+           R  +  + T  EVDR +
Sbjct: 369 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 395

>pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 162/397 (40%), Gaps = 47/397 (11%)
Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H   H    ++   +E  R + + 
Sbjct: 21  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 80
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A S +E++F  G TE  N+      +       ++I +Q EH   +   + L  + G
Sbjct: 81  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 140
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L       T L+++  V+N +G   P+ E+  +  +      
Sbjct: 141 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 200
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
            D AQA+   PVDV+  +      SGHK+YGP G+G LY++      + P   GG     
Sbjct: 201 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 260
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKEMDYDHKRITALH 326
           +                +GT  T  I+G G+A E         IA+ E +  H  ++ L 
Sbjct: 261 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQL- 319
Query: 327 DRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASL 386
                   E +  + + G   R  +   NL   +       +    +AV +G  C +  L
Sbjct: 320 --------ESVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHC-AMPL 370
Query: 387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI 423
              Y + A+           R  +  + T  EVDR +
Sbjct: 371 MAYYNVPAM----------CRASLAMYNTHEEVDRLV 397

>pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 140/327 (42%), Gaps = 30/327 (9%)
Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H   H    ++   +E  R + + 
Sbjct: 19  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 78
Query: 113 LIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A S +E++F  G TE  N+      +       ++I +Q EH   +   + L  + G
Sbjct: 79  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 138
Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L       T L+++  V+N +G   P+ E+  +  +      
Sbjct: 139 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 198
Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG 290
            D AQA+   PVDV+  +      SGHK+YGP G+G LY++      + P   GG     
Sbjct: 199 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 258
Query: 291 I---------------RSGTLPTPLIVGFGSACE---------IAKKE---MDYDHKRIT 323
           +                +GT  T  I+G G+A E         IA+ E   M Y   ++ 
Sbjct: 259 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE 318
Query: 324 ALHDRLLNGIKEKLDGVVVNGSMERRY 350
           ++ D  L G + +L  +  N      Y
Sbjct: 319 SVPDLTLYGPQNRLGVIAFNLGKHHAY 345

>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420

Iteration: 1
 Score = 99.4 bits (246), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 5/237 (2%)
Query: 53  RIAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIA 111
            I G PL YLD  AT+     VL+ ++ +Y +   N H   H     +  A E  R+++A
Sbjct: 23  EINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82
Query: 112 DLIGA-SPKEIIFTSGATESNN-VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ-Q 168
             I A SP+EI++T  ATE+ N V+    M+  K     +ITT  EH   L   + +  +
Sbjct: 83  KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDE-IITTVMEHHSNLVPWQMVAAK 141
Query: 169 EGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIP 228
            G  + ++ +      +L+  +  +   T L++V+ ++N +G + P EEI Q+  +    
Sbjct: 142 TGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAK 201
Query: 229 FHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG 285
              DA Q+    P+DV+  +   +  SGHK+  P G+G LY +      + P   GG
Sbjct: 202 VLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGG 258

>pdb|1ELQ|A Chain A, Crystal Structure Of The Cystine C-S Lyase C-Des Length = 390

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL 166
           R  +A+     P  I  T   T   ++ + G+     D+   ++ T  EH  ++   + +
Sbjct: 65  RQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE---ILLTDCEHPGIIAIVQAI 121
Query: 167 QQEGFEITY--LPVGADGIVNLDELRAA------IRPDTGLISVMAVNNEIGVIQPMEEI 218
               F ITY   PV A     L++  AA      + P T L+ +  +    G + P+ EI
Sbjct: 122 AAR-FGITYRFFPVAA----TLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEI 176
Query: 219 GQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMR 271
             +C+     + +    D AQ+ G +P+D  +  V   + +GHK + GP GVG LY+ 
Sbjct: 177 MAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIH 234

>pdb|1N2T|A Chain A, C-Des Mutant K223a With Gly Covalenty Linked To The Plp-Cofactor Length = 386

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL 166
           R  +A+     P  I  T   T   ++ + G+     D+   ++ T  EH  ++   + +
Sbjct: 61  RQALAETFNVDPNTITITDNVTTGCDIVLWGLDWHQGDE---ILLTDCEHPGIIAIVQAI 117
Query: 167 QQEGFEITY--LPVGADGIVNLDELRAA------IRPDTGLISVMAVNNEIGVIQPMEEI 218
               F ITY   PV A     L++  AA      + P T L+ +  +    G + P+ EI
Sbjct: 118 AAR-FGITYRFFPVAA----TLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEI 172
Query: 219 GQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-GPKGVGALYMR 271
             +C+     + +    D AQ+ G +P+D  +  V   + +GH  + GP GVG LY+ 
Sbjct: 173 MAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHAWFAGPAGVGGLYIH 230

>pdb|3MBB|A Chain A, Crystal Structure Of Stspl - Apo Form, After Treatment With Semicarbazide Length = 514

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 97  WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
           +E+EV   TA     D  G +    + TSG TES  +++K     Y+D  R         
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
             V  S      +  Q  G ++   P+ AD   ++  +R AI P+T +++  A     GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGXPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
           + P+ EI  +  E  I  H DA         A+ LG    P D     V+ +S   HK  
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
           YG KG   +  RR   +  +  I     GG       +G+ P  L     +A     +E 
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
             D  +RI    DRL  G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394

>pdb|3MAF|B Chain B, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 105/260 (40%), Gaps = 27/260 (10%)
Query: 97  WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
           +E+EV   TA     D  G +    + TSG TES  +++K     Y+D  R         
Sbjct: 144 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 198
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
             V  S      +  Q  G ++   P+ AD   ++  +R AI P+T +++  A     GV
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 258
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
           + P+ EI  +  E  I  H DA         A+ LG    P D     V+ +S   HK  
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYG 318
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
           YG KG   +  RR   +  +  I     GG       +G+ P  L     +A     +E 
Sbjct: 319 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 378
Query: 316 DYDH-KRITALHDRLLNGIK 334
             D  +RI    DRL  G++
Sbjct: 379 YLDATRRILQAADRLKAGVR 398

>pdb|3MAF|A Chain A, Crystal Structure Of Stspl (Asymmetric Form) Length = 518

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97  WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
           +E+EV   TA     D  G +    + TSG TES  +++K     Y+D  R         
Sbjct: 144 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 198
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
             V  S      +  Q  G ++   P+ AD   ++  +R AI P+T +++  A     GV
Sbjct: 199 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 258
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
           + P+ EI  +  E  I  H DA         A+ LG    P D     V+ +S   H   
Sbjct: 259 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 318
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
           YG KG   +  RR   +  +  I     GG       +G+ P  L     +A     +E 
Sbjct: 319 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 378
Query: 316 DYDH-KRITALHDRLLNGIK 334
             D  +RI    DRL  G++
Sbjct: 379 YLDATRRILQAADRLKAGVR 398

>pdb|3MAU|A Chain A, Crystal Structure Of Stspl In Complex With Phosphoethanolamine Length = 514

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97  WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
           +E+EV   TA     D  G +    + TSG TES  +++K     Y+D  R         
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
             V  S      +  Q  G ++   P+ AD   ++  +R AI P+T +++  A     GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
           + P+ EI  +  E  I  H DA         A+ LG    P D     V+ +S   H   
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHAYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
           YG KG   +  RR   +  +  I     GG       +G+ P  L     +A     +E 
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
             D  +RI    DRL  G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394

>pdb|3MAD|A Chain A, Crystal Structure Of Stspl (Symmetric Form) Length = 514

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 104/260 (40%), Gaps = 27/260 (10%)
Query: 97  WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEH 156
           +E+EV   TA     D  G +    + TSG TES  +++K     Y+D  R         
Sbjct: 140 FEAEVVAMTAHMLGGDAAGGTVCGTV-TSGGTESLLLAMKT----YRDWARATKGITAPE 194
Query: 157 KCVLDSC-----RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV 211
             V  S      +  Q  G ++   P+ AD   ++  +R AI P+T +++  A     GV
Sbjct: 195 AVVPVSAHAAFDKAAQYFGIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGV 254
Query: 212 IQPMEEIGQICKEFKIPFHTDA---------AQALGK--IPVDVEKWNVSLMSLSGHKI- 259
           + P+ EI  +  E  I  H DA         A+ LG    P D     V+ +S   H   
Sbjct: 255 VDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHXYG 314
Query: 260 YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM 315
           YG KG   +  RR   +  +  I     GG       +G+ P  L     +A     +E 
Sbjct: 315 YGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEEG 374
Query: 316 DYDH-KRITALHDRLLNGIK 334
             D  +RI    DRL  G++
Sbjct: 375 YLDATRRILQAADRLKAGVR 394

>pdb|1VJO|A Chain A, Crystal Structure Of Alanine--Glyoxylate Aminotransferase (Alr1004) From Nostoc Sp. At 1.70 A Resolution Length = 393

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 183 IVNLDELRAAI---RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
           + +L+ELR A+   RP   +++++      G  QP+E +G++C+EF      D   +LG 
Sbjct: 145 VFSLEELRTALETHRP--AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGG 202
Query: 240 IPVDVEKWNVSLMSLSGHKIYG 261
           +P+ ++ W V L      K  G
Sbjct: 203 VPIFLDAWGVDLAYSCSQKGLG 224

>pdb|3F9T|A Chain A, Crystal Structure Of L-tyrosine Decarboxylase Mfna (ec 4.1.1.25) (np_247014.1) From Methanococcus Jannaschii At 2.11 A Resolution Length = 397

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 7/131 (5%)
Query: 124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE------GFEITYLP 177
            SG TE+N  +++ + + +++K+R  ++     K ++    H   E        E  Y P
Sbjct: 92  VSGGTEANLXALRCIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREXXDLEYIYAP 151
Query: 178 VGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
           +  D  ++   ++ A+   D   I  +A   E+G I  +EE+ +I KE  I  H DAA  
Sbjct: 152 IKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFG 211
Query: 237 LGKIPVDVEKW 247
              IP   +K+
Sbjct: 212 GLVIPFLDDKY 222

>pdb|3NNK|A Chain A, Biochemical And Structural Characterization Of A Ureidoglycine Aminotransferase In The Klebsiella Pneumoniae Uric Acid Catabolic Pathway Length = 411

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 193 IRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM 252
           IRP   L+  +  +    ++QP+ E+G+IC+ +   F+TDA  +LG  P++ + W +  +
Sbjct: 137 IRPR--LLLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAV 194
Query: 253 SLSGHK-IYGPKGVGALYMRRR 273
           S      + GP G   + +  R
Sbjct: 195 SAGMQXCLGGPSGTSPITLSAR 216

>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus Horikoshii Ot3 Length = 386

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 60/144 (41%), Gaps = 14/144 (9%)
Query: 184 VNLDELRAAIR--PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP 241
           V  ++L  A+R  PD   +++       GV+ P+ E+ ++ KE       DA  A+G   
Sbjct: 132 VKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGAD 191
Query: 242 VDVEKWNVSLMSLSGHKIYG-PKG--VGAL---------YMRRRPRIRVEPLINGGGQER 289
           +  +KW + ++  S  K +G P G  +GA           M  R      PL     +E+
Sbjct: 192 IKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEK 251
Query: 290 GIRSGTLPTPLIVGFGSACEIAKK 313
                T P P + G   A  I +K
Sbjct: 252 ESTPSTPPMPQVFGINVALRIIEK 275

>pdb|2CH1|A Chain A, Structure Of Anopheles Gambiae 3-Hydroxykynurenine Transaminase Length = 396

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGV 265
           G++QP+E +GQIC +       DA  +L  +P  ++KW +  +     K+ G P G+
Sbjct: 157 GLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGI 213

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	457
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	0.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	0.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	0.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	0.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	3e-47
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	1e-46
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	3e-45
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	3e-44
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	2e-42
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	3e-31
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	8e-20
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	2e-17
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	3e-15
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	1e-14
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	7e-14
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	2e-13
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	8e-13
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	2e-12
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	1e-10
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	2e-10
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-08
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	1e-08
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	3e-08
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	4e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	9e-08
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	1e-07
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	1e-07
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	1e-07
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	3e-07
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	3e-07
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	4e-07
1svv_A	359	Threonine aldolase; structural genomics, structura	5e-07
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	5e-07
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	5e-07
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	6e-07
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	6e-07
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	9e-07
3pj0_A	359	LMO0305 protein; structural genomics, joint center	8e-06
1iug_A	352	Putative aspartate aminotransferase; wild type, py	1e-05
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	1e-05
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	1e-05
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	2e-05
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	7e-05
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	2e-04
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	4e-04
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	4e-04
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	5e-04
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	5e-04
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	5e-04

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* Length = 423

 Score =  796 bits (2058), Expect = 0.0
 Identities = 234/403 (58%), Positives = 316/403 (78%), Gaps = 3/403 (0%)

Query: 57  RPLYLDMQATTPVDPRVLDAMLPFY--LSRYGNPHSRTHLFGWESEVAVETARSQIADLI 114
            P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+
Sbjct: 22  LPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLV 81

Query: 115 GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
           GA P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+T
Sbjct: 82  GADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVT 141

Query: 175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA 234
           YL    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA 
Sbjct: 142 YLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDAT 201

Query: 235 QALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSG 294
           Q++GK+P+D+ +  V LMS SGHKIYGPKG+GALY+RR+PR+R+E  ++GGG ERG+RSG
Sbjct: 202 QSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSG 261

Query: 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354
           TLP   IVG G A  IAK+EM  + +R+  L +RL NGIK+ ++ V +NG +E      L
Sbjct: 262 TLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNIL 320

Query: 355 NLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT 414
           N+SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFT
Sbjct: 321 NVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFT 380

Query: 415 TEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIKQIQWAQH 457
           TE E+D  IEL  K + +LR++SPL+EM K+G+D+  I+WA H
Sbjct: 381 TEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNSIEWAHH 423

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382

 Score =  726 bits (1877), Expect = 0.0
 Identities = 159/385 (41%), Positives = 249/385 (64%), Gaps = 7/385 (1%)

Query: 59  LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP 118
            Y D  +  PVD R+L+AMLP+    +GNP S  H +G+++  AV+ AR ++A L+    
Sbjct: 2   AYFDYTSAKPVDERILEAMLPYMTESFGNP-SSVHSYGFKAREAVQEAREKVAKLVNGGG 60

Query: 119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
             ++FTSGATE+NN++I G       K +H++ +  EH  V++  + LQ++GFE+ Y+PV
Sbjct: 61  GTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPV 120

Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
           G  G V++  +   +R DT L+SV   NNEIG IQP+EEI ++    K   H DA  ++G
Sbjct: 121 GKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAG-KAALHIDATASVG 179

Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT 298
           +I VDVEK    ++++S + IYGPKGVGAL++R+    +++P+I GGGQE G+RSG+   
Sbjct: 180 QIEVDVEKIGADMLTISSNDIYGPKGVGALWIRK--EAKLQPVILGGGQENGLRSGSENV 237

Query: 299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358
           P IVGFG A EI   E   + +R+  L DR+++ +  K++   +NG  E+R   N+N+ F
Sbjct: 238 PSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVL-KIEESYLNGHPEKRLPNNVNVRF 296

Query: 359 AYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE 416
           +Y+EGES+++ L    +  S+GSAC+S +L+PS+VL A G+  + AH ++   +GR+ T+
Sbjct: 297 SYIEGESIVLSLDMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTD 356

Query: 417 AEVDRAIELTVKQVEKLREMSPLYE 441
            +VDR +E+    +E+LR MSPLY 
Sbjct: 357 EDVDRLLEVLPGVIERLRSMSPLYR 381

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384

 Score =  714 bits (1845), Expect = 0.0
 Identities = 159/385 (41%), Positives = 229/385 (59%), Gaps = 9/385 (2%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           Y D  ATT VD RVL+ M+ FY  +YGNP+S  H  G E+ + +E AR ++A ++G SP 
Sbjct: 4   YFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS 62

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           EI FTS ATES N  +K V   ++ +KR +ITT  EHK VL++ ++L  +GF++ Y+PV 
Sbjct: 63  EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD 122

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQAL 237
           + G+V L+EL   +  DT L+S+MA NNE+G IQP+E++ +I K+   +   H DA Q +
Sbjct: 123 SRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTI 182

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP  +EK  V   S S HK +GPKGVG  Y+R+   IR  PLI+GGGQERG+RSGT  
Sbjct: 183 GKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQN 240

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
            P IVG   A EIA +E+    K +  L  +L++G+     G  +   +E      L++S
Sbjct: 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMNL--GAHIITPLEISLPNTLSVS 298

Query: 358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           F  + G +L   L    + VS+ SACTS      +VL A+GVD  +A  +IR  + ++ T
Sbjct: 299 FPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT 358

Query: 416 EAEVDRAIELTVKQVEKLREMSPLY 440
           E EVD  ++   + +  L       
Sbjct: 359 EEEVDYFLKKIEEILSFLDLTGNNR 383

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* Length = 432

 Score =  665 bits (1718), Expect = 0.0
 Identities = 135/418 (32%), Positives = 218/418 (52%), Gaps = 38/418 (9%)

Query: 55  AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI 114
             R +Y+D  ATTP++P V+ A+       +GNP S +++ G +++  + TAR+ +A +I
Sbjct: 16  PNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNP-SSSYVAGRKAKDIINTARASLAKMI 74

Query: 115 GASPKEIIFTSGATESNNVSIKGVMHFYKDK-----------------KRHVITTQTEHK 157
           G  P++IIFTSG TESNN+ I   +  + ++                 + H IT   EH 
Sbjct: 75  GGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHD 134

Query: 158 CVLDSCRHL-QQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215
            +     HL + +  E+T++PV   +G V ++++ AA+RP T L+++M  NNE GVI P+
Sbjct: 135 SIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPI 194

Query: 216 EEIGQICKE----------FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGV 265
            EI +  K            ++  HTDAAQALGK  VDVE   V  +++ GHK YGP+ +
Sbjct: 195 SEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-I 253

Query: 266 GALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA 324
           GALY+R   +   + P++ GGGQER  R GT  TP+I G G A ++  +  +     +  
Sbjct: 254 GALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRD 313

Query: 325 LHDRLLNGIKEKL-DGVVVNGSME--RRYIGNLNLSFAYVEGES--LLMGLKEVAVSSGS 379
           + D L   ++ +    + +N       R     N S    +     +L   + +  S G+
Sbjct: 314 IRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGA 373

Query: 380 ACTSASLE-PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM 436
           +C S   + PS VL + G+  D+A  ++R  +GR TT AEVD  ++   + V +L   
Sbjct: 374 SCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQLEGP 431

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390

 Score =  166 bits (423), Expect = 3e-47
 Identities = 73/399 (18%), Positives = 130/399 (32%), Gaps = 68/399 (17%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           Y +      +    L+A+   Y     N            +  +   R  +A+     P 
Sbjct: 19  YFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQ-LIAQLRQALAETFNVDPN 77

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKR-HVITTQTEHKCVLDSCRHLQQE-GFEITYLP 177
            I  T   T   ++    V+      +   ++ T  EH  ++   + +    G    + P
Sbjct: 78  TITITDNVTTGCDI----VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFP 133

Query: 178 VGA--DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE----FKIPFHT 231
           V A  +       L   + P T L+ +  +    G + P+ EI  +C+     + +    
Sbjct: 134 VAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLV 193

Query: 232 DAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGG---- 286
           D AQ+ G +P+D  +  V   + +GHK   GP GVG LY+       + P   G      
Sbjct: 194 DGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITY 253

Query: 287 ---------QERGIR--SGTLPTPLIVGFGSACE----IAKKEMDYDHKRITALHDRLLN 331
                     E G R    T   P   G  +A +        E  Y    I    + L  
Sbjct: 254 GAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQA--ICQRSEFLWR 311

Query: 332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG----ESLLMGLKE--VAVSSGSACTSAS 385
           G+ + L  V    +   +    L +SF  V+      +++  L+E  + +          
Sbjct: 312 GLNQ-LPHVHCLATSAPQ--AGL-VSFT-VDSPLGHRAIVQKLEEQRIYL---------- 356

Query: 386 LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
                  R +          IR      T E E++  + 
Sbjct: 357 -------RTIAD-----PDCIRACCHYITDEEEINHLLA 383

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406

 Score =  165 bits (420), Expect = 1e-46
 Identities = 95/422 (22%), Positives = 167/422 (39%), Gaps = 73/422 (17%)

Query: 53  RIAGRPL-YLDMQATT--PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQ 109
            + G PL YLD  A+   P   +V+DA   FY   Y   H   H    ++   +E  R +
Sbjct: 18  EVNGLPLAYLDSAASAQKPS--QVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKR 75

Query: 110 IADLIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRH----VITTQTEHKCVLDSCR 164
            +  I A S +E++F  G TE  N+    V + + +        +I +Q EH        
Sbjct: 76  ASLFINARSAEELVFVRGTTEGINL----VANSWGNSNVRAGDNIIISQMEH-------- 123

Query: 165 H---------LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215
           H           + G E+  +P+  DG + L+ L       T L+++  V+N +G   P+
Sbjct: 124 HANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPL 183

Query: 216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPR 275
            E+  +  +       D AQA+   PVDV+  +      SGHK+YGP G+G LY++    
Sbjct: 184 AEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALL 243

Query: 276 IRVEPLINGGG--QERGIRSGT----LP------TPLI---VGFGSACE-IAKKEMDYDH 319
             + P   GG       +  GT     P      TP     +G G+A E ++   ++   
Sbjct: 244 QEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIA 303

Query: 320 KRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE-----SLLMGLKEVA 374
           +    L    L+ ++  +  + + G   R  +    ++F  +           +    +A
Sbjct: 304 EYEQNLMHYALSQLES-VPDLTLYGPQNRLGV----IAFN-LGKHHAYDVGSFLDNYGIA 357

Query: 375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR 434
           V +G  C      P  ++    V         R  +  + T  EVDR +      ++++ 
Sbjct: 358 VRTGHHCA----MP--LMAYYNV-----PAMCRASLAMYNTHEEVDRLVT----GLQRIH 402

Query: 435 EM 436
            +
Sbjct: 403 RL 404

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420

 Score =  161 bits (411), Expect = 3e-45
 Identities = 98/424 (23%), Positives = 169/424 (39%), Gaps = 74/424 (17%)

Query: 53  RIAGRPL-YLDMQATT--PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQ 109
            I G PL YLD  AT+  P    VL+ ++ +Y +   N H   H     +  A E  R++
Sbjct: 23  EINGHPLVYLDNAATSQKPR--AVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNK 80

Query: 110 IADLIGA-SPKEIIFTSGATESNNVSIKGVMHFYKDKKRH----VITTQTEHKCVLDSCR 164
           +A  I A SP+EI++T  ATE+ N+    V + +          +ITT  EH        
Sbjct: 81  VAKFINARSPREIVYTRNATEAINL----VAYSWGMNNLKAGDEIITTVMEH-------- 128

Query: 165 H---------LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215
           H           + G  + ++ +      +L+  +  +   T L++V+ ++N +G + P 
Sbjct: 129 HSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPA 188

Query: 216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPR 275
           EEI Q+  +       DA Q+    P+DV+  +   +  SGHK+  P G+G LY +    
Sbjct: 189 EEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEIL 248

Query: 276 IRVEPLINGGGQERGIRSGT--------LP------TPLI---VGFGSACE-IAKKEMDY 317
             + P   GG     I            LP      TP I   +  G+A + +    M+ 
Sbjct: 249 EAMPPFFGGGEM---IAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMEN 305

Query: 318 DHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE-----SLLMGLKE 372
            H     L   L  G+ + +  + + G   +        SF  V G      + ++    
Sbjct: 306 IHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFN-VAGLHASDVATMVDQDG 363

Query: 373 VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK 432
           +A+ SG  CT    +P  + R           S R  +  + T+ E+D  ++     ++ 
Sbjct: 364 IAIRSGHHCT----QP--LHRLFDA-----SGSARASLYFYNTKEEIDLFLQ----SLQA 408

Query: 433 LREM 436
               
Sbjct: 409 TIRF 412

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371

 Score =  158 bits (401), Expect = 3e-44
 Identities = 45/304 (14%), Positives = 100/304 (32%), Gaps = 35/304 (11%)

Query: 64  QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLF-GWESEVAVETARSQIADLIGASPKEII 122
           Q    +      A+L +           T      ++    +   +Q+   +G       
Sbjct: 16  QTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC--DVAR 73

Query: 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GA 180
            T+GA E+       VMH    K   V+  +  H     +    ++ G  I  +P     
Sbjct: 74  VTNGAREAKFA----VMHSLAKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYP 126

Query: 181 DGIVNLDELRAAIRPDT-----GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           D  +  +     I          L  +   +   G +  +++I ++C E+ +P   + A 
Sbjct: 127 DYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAY 186

Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKG-VGALYMRRRPRIRVEPLINGGGQERG---- 290
           A+G++PV +++     +  SGHK     G +G + M+       E ++    + +     
Sbjct: 187 AIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEE---WAEIVLRRSEKYKNKEVE 243

Query: 291 IRSGTLPTPLIVGFGSACEIAKKEM----------DYDHKRITALHDRLLNGIKEKLDGV 340
           +   T     I+   ++    ++ +                +  L  + L       D +
Sbjct: 244 LLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLM 303

Query: 341 VVNG 344
             + 
Sbjct: 304 FFHA 307

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406

 Score =  153 bits (390), Expect = 2e-42
 Identities = 57/408 (13%), Positives = 136/408 (33%), Gaps = 66/408 (16%)

Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
             G    + D  A   +   V   +   +     +     H     S   ++ AR  +AD
Sbjct: 22  SLGDGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVAD 80

Query: 113 LIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR---HVITTQTEHKCVLDSCRH---- 165
           L+ A P  ++  +      ++    +      +      VI ++ +              
Sbjct: 81  LVNADPGGVVLGADRAVLLSL----LAEASSSRAGLGYEVIVSRLDD--------EANIA 128

Query: 166 -----LQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG 219
                  + G ++ +  V  + G +   +  + I   T L++V + +  +G +  +  + 
Sbjct: 129 PWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTDLRAMT 188

Query: 220 QICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE 279
           ++  +       D + A     +D+ + +  +++++ H   GP     ++          
Sbjct: 189 KLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPPIGAMVFRDPSVMNSFG 248

Query: 280 PLINGGGQERGIR--SGTLPTPLIVGFGSACE---------------IAKKEMDYDHKRI 322
            +          R   G     L+ G  ++ E                    M      +
Sbjct: 249 SVSTNPYATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYL 308

Query: 323 TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG---ESLLMGLKE---VAVS 376
             + D L+  ++  L  V++ G  E + I    +SFA V     + ++  L +   +A++
Sbjct: 309 NRVFDYLMVSLRS-LPLVMLIGRPEAQ-IP--VVSFA-VHKVPADRVVQRLADNGILAIA 363

Query: 377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE 424
           +  +          VL    V       ++  G+  ++T AEVD+ + 
Sbjct: 364 NTGSRVLD------VLGVNDV-----GGAVTVGLAHYSTMAEVDQLVR 400

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416

 Score =  123 bits (310), Expect = 3e-31
 Identities = 71/396 (17%), Positives = 138/396 (34%), Gaps = 64/396 (16%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTH-LFGWESEVAVETARSQIADLIGASP 118
           YLD  +        L          +GN   R+    GW      E   +++A LIGA  
Sbjct: 31  YLDGNSLGARPVAALARAQAVIAEEWGNGLIRSWNSAGWRD--LSERLGNRLATLIGARD 88

Query: 119 KEIIFTSGATESNNVSIKGVMHFYK-----DKKRHVI-TTQTEHKCVLDSCRHLQQEGFE 172
            E++ T   +   N+  K +    +       +R VI T  +       +  ++ +   +
Sbjct: 89  GEVVVTDTTSI--NLF-KVLSAALRVQATRSPERRVIVTETSNFP----TDLYIAEGLAD 141

Query: 173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTD 232
           +         + + +EL  AI  DT ++ +  VN + G +  M+ +  +  E       D
Sbjct: 142 MLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWD 201

Query: 233 AAQALGKIPVDVEKWNVSLMSLSGHKIY--GPKGVGALYMRRRPRIRVEPLINGG-GQE- 288
            A + G +PVD+ +          +K    GP     +++  +    V   ++G  G   
Sbjct: 202 LAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSR 261

Query: 289 --------------RGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGI 333
                              GT P   +       ++ A+ +M    ++  AL D  +  +
Sbjct: 262 QFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELV 321

Query: 334 KEKL--DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPS 389
           +++     + +    E    G+  +SF + EG +++  L +  V                
Sbjct: 322 EQRCAAHELTLVTPREHAKRGSH-VSFEHPEGYAVIQALIDRGVIGD------------- 367

Query: 390 YVLRALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIE 424
              R   +        +RFG     TT  EV  A++
Sbjct: 368 --YREPRI--------MRFGFTPLYTTFTEVWDAVQ 393

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* Length = 465

 Score = 90.4 bits (224), Expect = 8e-20
 Identities = 57/390 (14%), Positives = 111/390 (28%), Gaps = 73/390 (18%)

Query: 81  YLSRYGNPHSRTHLFGWESEVAV-ETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139
            L ++    +  H  G    +   E+    + D++GA+ KEI   +  T + ++ +    
Sbjct: 90  ELDKWAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF 149

Query: 140 HFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADG--------IVNLDELR 190
                + + ++           +    LQ  G  I                 I ++ E+ 
Sbjct: 150 KPTPKRYK-ILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVI 208

Query: 191 AAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVS 250
                   +I    V+   G    +  I +  +        D A A+G + + +  W V 
Sbjct: 209 EKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVD 268

Query: 251 LMSLSGHK--IYGPKGVGALYMRRRPRIRVEP-LINGGGQE-----------------RG 290
                 +K    G  G+   ++  +    ++P L+   G E                  G
Sbjct: 269 FACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCG 328

Query: 291 IRSGTLPTPLIVGFGSACEIAKKEMDYDH--KRITALHDRLLNGIKEKLDGVVVNGSM-- 346
            R    P  L+    ++ EI  K+       K+   L   L   IK              
Sbjct: 329 FRISNPPILLVCSLHASLEIF-KQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPV 387

Query: 347 ---------ERRYIGNLNLSFAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRAL 395
                    E R    L ++F+ V  + +   L++  V                   R  
Sbjct: 388 VNIITPSHVEER-GCQLTITFS-VPNKDVFQELEKRGVVCD---------------KRNP 430

Query: 396 GVDEDMAHTSIRFGIGRF-TTEAEVDRAIE 424
                     IR        +  +V +   
Sbjct: 431 NG--------IRVAPVPLYNSFHDVYKFTN 452

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Length = 397

 Score = 82.8 bits (205), Expect = 2e-17
 Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 40/236 (16%)

Query: 66  TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTS 125
            + V P     +  F  +  G+P         E +       + +  L+          S
Sbjct: 39  CSNVLPITRKIVDIFLETNLGDPGLFKGTKLLEEKAV-----ALLGSLLNNKDAYGHIVS 93

Query: 126 GATESNNVSIKGVMHFYKDKKRH-------------VITTQTEHKCVLDSCRHLQQEGFE 172
           G TE+N   +  +    K+  R              +I   T H         +     E
Sbjct: 94  GGTEAN---LMALR-CIKNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLE 146

Query: 173 ITYLPVGADGIVNLDELRAAIRPDT-GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHT 231
             Y P+  D  ++   ++ A+       I  +A   E+G I  +EE+ +I KE  I  H 
Sbjct: 147 YIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHV 206

Query: 232 DAA---------QALGKIPVDVEKWN----VSLMSLSGHK-IYGPKGVGALYMRRR 273
           DAA             K      K++    V  +++  HK  + P   G +  +  
Sbjct: 207 DAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDI 262

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514

 Score = 76.9 bits (189), Expect = 3e-15
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 31/190 (16%)

Query: 108 SQIADLIGA--SPKEII--FTSGATESNNVSIKGVMHFYKDKKRH--------VITTQTE 155
           +  A ++G   +   +    TSG TES  +++K     Y+D  R          +   + 
Sbjct: 146 AMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMK----TYRDWARATKGITAPEAVVPVSA 201

Query: 156 HKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM 215
           H     + ++    G ++   P+ AD   ++  +R AI P+T +++  A     GV+ P+
Sbjct: 202 HAAFDKAAQYF---GIKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPI 258

Query: 216 EEIGQICKEFKIPFHTDAAQA------LGKIPVDVEKWN-----VSLMSLSGHKI-YGPK 263
            EI  +  E  I  H DA           ++   V  ++     V+ +S   HK  YG K
Sbjct: 259 PEIAALAAEHGIGCHVDACLGGFILPWAERLGYPVPPFDFRLEGVTSVSADTHKYGYGAK 318

Query: 264 GVGALYMRRR 273
           G   +  RR 
Sbjct: 319 GTSVILYRRP 328

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Length = 497

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 52/274 (18%)

Query: 108 SQIADLIGASPKEII--FTSGATESNNVSIKGVMHFYKDKKRH--------VITTQTEHK 157
           S +  +  A         TSG TES    +   +   K    H        +I   T H 
Sbjct: 114 SMVLRMFNAPSDTGCGTTTSGGTESL---LLACLS-AKMYALHHRGITEPEIIAPVTAHA 169

Query: 158 CVLDSCRHLQQEGFEITYLPVGADG-IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME 216
               +  +    G ++ ++ +      V+L +++  I  +T L+   A N   G+   +E
Sbjct: 170 GFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIE 226

Query: 217 EIGQICKEFKIPFHTDAAQALGKIP-------VDVEKWN-----VSLMSLSGHKI-YGPK 263
            +G+I +++K+P H D+      +         ++   +     V+ +S   HK  + PK
Sbjct: 227 GLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPK 286

Query: 264 GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK----------- 312
           G   +  R       +  +N          G   +P + G      +             
Sbjct: 287 GSSVIMYRNSDLRMHQYYVNPAWTG-----GLYGSPTLAGSRPGAIVVGCWATMVNMGEN 341

Query: 313 --KEMDYDHKRITALHDRLLNGIKEKLDGVVVNG 344
              E     + I     +    I+E +  + + G
Sbjct: 342 GYIES---CQEIVGAAMKFKKYIQENIPDLDIMG 372

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502

 Score = 72.4 bits (177), Expect = 7e-14
 Identities = 35/242 (14%), Positives = 85/242 (35%), Gaps = 37/242 (15%)

Query: 65  ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI--- 121
            TT ++P     ++      Y +          ++        + IA L  A  +E    
Sbjct: 64  VTTWMEPECDKLIMSSINKNYVDMDEYPVTTELQNRCV-----NMIAHLFNAPLEEAETA 118

Query: 122 --IFTSGATESNNVSIKGVMHFYKDKKRH---------VITTQTEHKCVLDSCRHLQQEG 170
             + T G++E+  ++       +++K++          ++T      C     R+     
Sbjct: 119 VGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---E 175

Query: 171 FEITYLPVGADG-IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK--- 226
            E+  + +     +++  +    +  +T  ++ +  +   G  + ++ +  +  E     
Sbjct: 176 VELKEVKLSEGYYVMDPQQAVDMVDENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKET 235

Query: 227 ---IPFHTDAAQALGKIPV--DVEKWN-----VSLMSLSGHK-IYGPKGVGALYMRRRPR 275
               P H DAA      P      +W+     V  +++SGHK      G+G +  R +  
Sbjct: 236 GWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKED 295

Query: 276 IR 277
           + 
Sbjct: 296 LP 297

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456

 Score = 71.2 bits (174), Expect = 2e-13
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 14/181 (7%)

Query: 110 IADLIGASPKEI--IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ 167
           +          +  I T  +T  +           K     VI     HK  + +   + 
Sbjct: 139 LESFFKQLGLNVHAIATPISTGMSISLCLSAAR-KKYGSNVVIYPYASHKSPIKAVSFVG 197

Query: 168 QEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAV-----NNEIGVIQPMEEIGQIC 222
                +  +  G    V ++++  AI+ +  L +   V              + EI +IC
Sbjct: 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKIC 257

Query: 223 KEFKIPFHTDAA---QALGKIPVDVEKWNVSLMSL--SGHKI-YGPKGVGALYMRRRPRI 276
           + + IP   + A   Q    +    + +   + ++  S  K    P G G +Y      I
Sbjct: 258 ENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFI 317

Query: 277 R 277
           +
Sbjct: 318 K 318

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Length = 452

 Score = 69.2 bits (169), Expect = 8e-13
 Identities = 37/237 (15%), Positives = 67/237 (28%), Gaps = 36/237 (15%)

Query: 65  ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI--- 121
             T  D  V   M       + +          +         + +ADL  A   +    
Sbjct: 50  CQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCV-----NMVADLWHAPAPKNGQA 104

Query: 122 --IFTSGATESNNVSIKGVMHFY--------KDKKRHVITTQTEHKCVLDSCRHLQQEGF 171
               T G++E+  +    +   +        K   +  +       C     R+      
Sbjct: 105 VGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW---DV 161

Query: 172 EITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK---- 226
           E+  +P+      ++   +  A   +T  +         G  +  + +     +F+    
Sbjct: 162 ELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTG 221

Query: 227 --IPFHTDAA-------QALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR 273
             I  H DAA            I  D     V  +S SGHK    P G G +  R  
Sbjct: 222 IDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDE 278

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Length = 366

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 36/182 (19%), Positives = 71/182 (39%), Gaps = 16/182 (8%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G        G     ++  + A +  D  +  +  V++E   G++ P++E+G +   +  
Sbjct: 103 GIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGK 162

Query: 228 PFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR----PRIRVEPLI 282
            +  DA  + G IP+D+   ++  +  S +K I G  G   +  R +     +     L 
Sbjct: 163 TYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222

Query: 283 -------NGGGQERGIRSGTLPTPLIVGFGSAC-EIAKKE-MDYDHKRITALHDRLLNGI 333
                         G    T PT  ++ F  A  E+AK+  +   H+R       L+ G+
Sbjct: 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGM 282

Query: 334 KE 335
           + 
Sbjct: 283 RA 284

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} Length = 376

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 32/181 (17%), Positives = 59/181 (32%), Gaps = 17/181 (9%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
                 L +     +  ++L      +     ++   +E    V+     IG+ CK+  +
Sbjct: 118 EIPYVALKLEHGKKLTKEKLYEYDNQNFTG--LLVNVDETSTAVLYDTMMIGEFCKKNNM 175

Query: 228 PFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGG- 285
            F  D   A    P ++ +    +M     K +  P G+  + +  R   RVE       
Sbjct: 176 FFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTM 235

Query: 286 ---------GQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIK 334
                     QERG    T    +++      +  KK    D +  RI +        IK
Sbjct: 236 YFDLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIK 295

Query: 335 E 335
           +
Sbjct: 296 D 296

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 61.7 bits (149), Expect = 2e-10
 Identities = 46/379 (12%), Positives = 105/379 (27%), Gaps = 52/379 (13%)

Query: 109 QIADLIGASPKEIIFTSGATESNNVSIKGVMHFYK--DKKRHVITTQTEHKCVLDSCRHL 166
           +  +L       II       + N+    ++ + +   K ++ +     H     +  H+
Sbjct: 84  KAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAA--HV 139

Query: 167 QQEGFEITYLPVGA----------DGIVNLDELRAAIRPDT----GLISVMAVNNEIG-- 210
           +  G +   +               G  ++ +L+  I          I      N  G  
Sbjct: 140 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ 199

Query: 211 --VIQPMEEIGQICKEFKIPFHTDAAQAL--------------GKIPVDVEKWNVSL--- 251
              +  ++E+ +I K+  I    D+A+                     +V          
Sbjct: 200 PVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADA 259

Query: 252 MSLSGHKIYGPKGVGALYMRRRP----RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA 307
           +++S  K       G + +R         R   +   G    G  +G     ++ G    
Sbjct: 260 LTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG 319

Query: 308 CEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLL 367
               ++ + Y   ++  L DRL             +            +       +++ 
Sbjct: 320 --TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAV- 376

Query: 368 MGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIELT 426
             +  + + SG               A G  +      +R  I R   T   +D   +  
Sbjct: 377 --INALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIAD-A 433

Query: 427 VKQVEKLREMSPLYEMVKE 445
           +  +++        E   E
Sbjct: 434 LIGLKEKFATLKGLEFEYE 452

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 33/169 (19%), Positives = 61/169 (36%), Gaps = 32/169 (18%)

Query: 92  THLFGWE-SEVAVETARS---QIADLIGASPKEIIFTSGATESNNVSIKGVM---HFYKD 144
           T  + +E + V V        ++  L+G S  + IF  G + SN  ++   +     Y D
Sbjct: 135 TSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAV--NLARYQRYPD 192

Query: 145 KKRH---------VITTQTEHKCVLDSCRHLQQEGFE---ITYLPVGADGIVNLDELRAA 192
            K+          + T++  H  +      L   G     +  +     G +  ++L   
Sbjct: 193 CKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQ 249

Query: 193 IRPDT--GLISVMAVNN-----EIGVIQPMEEIGQICKEFKIPFHTDAA 234
           I      G +    V+       +G   P+E I  +C+   +  H DAA
Sbjct: 250 IGMAEAEGAV-PFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAA 297

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* Length = 392

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 21/184 (11%), Positives = 51/184 (27%), Gaps = 19/184 (10%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
              +  + V  +  ++   +   ++    +  V   +++   G I P++ IG +      
Sbjct: 106 SPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGALVSAHGA 165

Query: 228 PFHTDAAQALGKIPVDVEKWNV---------SLMSLSGHKI--YGPKGVGALYMRRRPRI 276
               DA  + G +    E              L +  G  +     +    +        
Sbjct: 166 YLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPR 225

Query: 277 R----VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLN 331
                +    N   +++     T     I G   A ++   E  +    R       +  
Sbjct: 226 ASMLSIVDWENAWSRDKPFPF-TPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRA 284

Query: 332 GIKE 335
           G+  
Sbjct: 285 GVTA 288

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 37/171 (21%), Positives = 69/171 (40%), Gaps = 34/171 (19%)

Query: 92  THLFGWE-SEVAVETARS---QIADLIGASPKEI--IFTSGATESNNVSIKGVM---HFY 142
           T++F +E + V V   +    ++ +++G S K+   IF+ G   SN  SI  +     ++
Sbjct: 119 TNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSI--MAARYKYF 176

Query: 143 KDKKRH---------VITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELR 190
            + K           + T++  H  +  +   L   GF    +  +     G +   +  
Sbjct: 177 PEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKIIPADFE 233

Query: 191 AAIRPDT--GLISVMAVNN-----EIGVIQPMEEIGQICKEFKIPFHTDAA 234
           A I      G +    VN        G   P++EI  IC+++ +  H DAA
Sbjct: 234 AKILEAKQKGYV-PFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAA 283

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Length = 386

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 40/182 (21%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G +   L       V  ++L  A+R +  + +V    NE   GV+ P+ E+ ++ KE   
Sbjct: 118 GRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPELAKVAKEHDK 177

Query: 228 PFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVE------- 279
               DA  A+G   +  +KW + ++  S  K +G P G+       R     E       
Sbjct: 178 LVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGW 237

Query: 280 ----PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGI 333
               PL     +E+     T P P + G   A  I +K    +   +        +  G+
Sbjct: 238 YFDIPLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGV 297

Query: 334 KE 335
           +E
Sbjct: 298 RE 299

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 8e-08
 Identities = 62/413 (15%), Positives = 119/413 (28%), Gaps = 119/413 (28%)

Query: 137 GVMHF-YKDKKRHVITTQTEHKCVLD-SCRHLQQEGFEI-TYLPVGADGIVNL-DELRAA 192
           G   + YKD     I +  E   V +  C+ +Q     I +   +  D I+   D +   
Sbjct: 12  GEHQYQYKD-----ILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKDAVSGT 64

Query: 193 IRPDTGLISVMAVNNEIGVIQPMEEI---------GQICKEFKIP-----FHTDAAQALG 238
           +R    L   +    E  V + +EE+           I  E + P      + +    L 
Sbjct: 65  LR----LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 239 KIPVDVEKWNVS-----------LMSLSGHK---IYGPKGVG----ALYMRRRPRIRVEP 280
                  K+NVS           L+ L   K   I G  G G    AL +      +V+ 
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL--SYKVQC 178

Query: 281 LINGG------GQERGIRS-----GTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRL 329
            ++               +       L   +   + S  + +         RI ++   L
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL----RIHSIQAEL 234

Query: 330 LNGIKEK--------LDGV---------------------------VVNGSMERRYIGNL 354
              +K K        L  V                           +   +     + + 
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Query: 355 NLSFAYVEGESLLMGLKEVAVSSGS----ACTSASLEPSYVLRALGVDEDMAHTSIRFGI 410
           +++    E +SLL  LK +            T+     S +  ++    D   T   +  
Sbjct: 295 SMTLTPDEVKSLL--LKYLDCRPQDLPREVLTTNPRRLSIIAESI---RDGLATWDNW-- 347

Query: 411 GRFTTEAEVDRAIELTVKQVEKLREMSPLYEMV---KEGIDIK----QIQWAQ 456
            +     ++   IE ++  +E   E   +++ +        I      + W  
Sbjct: 348 -KHVNCDKLTTIIESSLNVLEP-AEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 6e-05
 Identities = 64/430 (14%), Positives = 120/430 (27%), Gaps = 142/430 (33%)

Query: 70  DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE 129
           + +  +A          N   +  L        + T   Q+ D          F S AT 
Sbjct: 255 NAKAWNAF---------NLSCKI-L--------LTTRFKQVTD----------FLSAATT 286

Query: 130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP-----VGA---D 181
           ++       M    D+ + ++      K +    + L +E       P     +     D
Sbjct: 287 THISLDHHSMTLTPDEVKSLLL-----KYLDCRPQDLPREVLTT--NPRRLSIIAESIRD 339

Query: 182 GI--------VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDA 233
           G+        VN D+L   I          ++N     ++P  E  ++     + F   A
Sbjct: 340 GLATWDNWKHVNCDKLTTIIE--------SSLNV----LEP-AEYRKMFDRLSV-FPPSA 385

Query: 234 AQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRS 293
                 IP  +      L  +    I                + V  L      E+  + 
Sbjct: 386 -----HIPTIL------LSLIWFDVIK-----------SDVMVVVNKLHKYSLVEKQPKE 423

Query: 294 GTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLN------------GIKEKLDGVV 341
            T+  P I       E+  K  +       ALH  +++             I   LD   
Sbjct: 424 STISIPSI-----YLELKVKLEN-----EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 342 VNGSMERRYIG----------------NLNLSFAYVEGESLLMGLKEVAVSSGSACTSAS 385
            +      +IG                 + L F ++E +         A  S    T   
Sbjct: 474 YS------HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQ 526

Query: 386 LE--PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMV 443
           L+    Y+       E + +  + F       E  +  +    + ++  + E   ++E  
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDF---LPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583

Query: 444 KEGIDIKQIQ 453
                 KQ+Q
Sbjct: 584 H-----KQVQ 588

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* Length = 396

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 37/186 (19%), Positives = 67/186 (36%), Gaps = 21/186 (11%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G ++  +    D   +L+ L  AI        +   + +   G++QP+E +GQIC +   
Sbjct: 116 GADVRTIEGPPDRPFSLETLARAIELHQPKC-LFLTHGDSSSGLLQPLEGVGQICHQHDC 174

Query: 228 PFHTDAAQALGKIPVDVEKWNV---------SLMSLSGHKI--YGPKGVGALYMRRRPR- 275
               DA  +L  +P  ++KW +          L +  G       PK +  +  RR    
Sbjct: 175 LLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSK 234

Query: 276 -----IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRL 329
                + +     G   E      T+ + LI     A     +E ++   KR       L
Sbjct: 235 VFYWDLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQIL 294

Query: 330 LNGIKE 335
             G+ +
Sbjct: 295 YEGLGK 300

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} Length = 411

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 39/199 (19%), Positives = 74/199 (37%), Gaps = 34/199 (17%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
             E+  + V    +   D++  A++     + ++ V  +    ++QP+ E+G+IC+ +  
Sbjct: 111 RAEVHTIEVPWGEVFTPDQVEDAVKRIRPRL-LLTVQGDTSTTMLQPLAELGEICRRYDA 169

Query: 228 PFHTDAAQALGKIPVDVEKWNV---------SLMSLSGHKI--YGPKGVGALYMRRRPRI 276
            F+TDA  +LG  P++ + W +          L   SG        +   A+  R+    
Sbjct: 170 LFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEE 229

Query: 277 RVEPLINGGGQERGIRS-------------------GTLPTPLIVGFGSACEIAKKE-MD 316
            +    +  G E  I S                    T  T  + G      +  +E +D
Sbjct: 230 GIRTDAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLD 289

Query: 317 YDHKRITALHDRLLNGIKE 335
           Y   R     D L+ GI+ 
Sbjct: 290 YGIARHKLHGDALVKGIQA 308

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Length = 384

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 34/186 (18%), Positives = 69/186 (37%), Gaps = 21/186 (11%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
              +  L       V   E+   +R     + V   + E   GV +P++++    +++  
Sbjct: 100 PVNVKVLRPSPGDYVKPGEVEEEVRKSEYKL-VALTHVETSTGVREPVKDVINKIRKYVE 158

Query: 228 PFHTDAAQALGKIPVDVEKWNV---------SLMSLSGHKI--YGPKGVGALYMRRRPR- 275
               D   ++G   V  E+WNV         +L S +G  +    PK +  L  +     
Sbjct: 159 LIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAG 218

Query: 276 -----IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRL 329
                    P++ G  + +     T P  +I+    A  + +KE ++   KR T +   +
Sbjct: 219 YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAI 278

Query: 330 LNGIKE 335
             G++ 
Sbjct: 279 RAGLEA 284

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 37/175 (21%)

Query: 92  THLFGWE-SEVAVETARS---QIADLIGASPKEI--IFTSGATESN-------------- 131
             +  W+ +  A    +     + D      ++   IFTSG T+SN              
Sbjct: 127 QSMDSWDQASSATYVEQKVVNWLCDKYD-LSEKADGIFTSGGTQSNQMGLMLARDWIADK 185

Query: 132 --NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNL 186
               SI+ +       K  ++ ++  H  V  S   +   G     +  +   ADG +++
Sbjct: 186 LSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWM---GLGEKAVMTVDANADGTMDI 242

Query: 187 DELRAAIRPDT--GLISVMAVNN-----EIGVIQPMEEIGQICKEFKIPFHTDAA 234
            +L   I      GLI   A+       + G I  ++ I  +  +  +  H D A
Sbjct: 243 TKLDEVIAQAKAEGLI-PFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGA 296

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 Length = 393

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 35/191 (18%), Positives = 68/191 (35%), Gaps = 34/191 (17%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMAVNNE--IGVIQPMEEIGQICKEF 225
           G ++  +      + +L+ELR A+          +  V+ E   G  QP+E +G++C+EF
Sbjct: 132 GADVRTISKPWGEVFSLEELRTALETHRPAI---LALVHAETSTGARQPLEGVGELCREF 188

Query: 226 KIPFHTDAAQALGKIPVDVEKWNV-----------------SLMSLSGHKIYGPKGVGAL 268
                 D   +LG +P+ ++ W V                 S  ++S       + +  L
Sbjct: 189 GTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMS------SRAIEKL 242

Query: 269 YMRRRPRIRV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITA 324
             RR           L+        +   T P  L      A  +  +E +    +R   
Sbjct: 243 QRRRTKVANWYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQK 302

Query: 325 LHDRLLNGIKE 335
             + L   +++
Sbjct: 303 NVEYLWERLED 313

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 26/135 (19%), Positives = 44/135 (32%), Gaps = 26/135 (19%)

Query: 122 IFTSGATESNNVSI--------------KGVMHFYKDKKRHVI--TTQTEHKCVLDSCRH 165
           +    A+E+  V++                 +      ++ V   + Q  H  V  +   
Sbjct: 143 VIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQA-HSSVERAGLI 201

Query: 166 LQQEGFEITYLPVGADGIVNLDELRAAIRPDT--GLISVMAVNN----EIGVIQPMEEIG 219
               G ++  +P      +    L+ A+  D   GLI    V             + E+G
Sbjct: 202 G---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVG 258

Query: 220 QICKEFKIPFHTDAA 234
            IC E  I  H DAA
Sbjct: 259 PICHEEDIWLHVDAA 273

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* Length = 467

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 50/387 (12%), Positives = 107/387 (27%), Gaps = 65/387 (16%)

Query: 109 QIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLD------- 161
            + ++ G   +  I T     +  + I  ++     K+                      
Sbjct: 82  SVKNIFGY--QYTIPTHQGRGAEQIYIPVLIK----KREQEKGLDRSKMVAFSNYFFDTT 135

Query: 162 ---------SCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNE 208
                    + R++  +    T +     G  +L+ L   I      +   I     +N 
Sbjct: 136 QGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNS 195

Query: 209 I-GVIQPME---EIGQICKEFKIPFHTDAA--------------QALGKIPVDVEKWNVS 250
             G    +     +  I K++ IP   D+A              +        + +    
Sbjct: 196 AGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYK 255

Query: 251 L---MSLSGHKIYGPKGVGALYMRRRP------RIRVEPLINGGGQERGIRSGTLPTPLI 301
               +++S  K       G L M+           R   ++  G    G   G     L 
Sbjct: 256 YADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLA 315

Query: 302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV 361
           VG      +    + Y   ++  L D L     E++  V         ++ +      ++
Sbjct: 316 VGLYDGMNLDW--LAYRIAQVQYLVDGL-----EEIGVVCQQAGGHAAFV-DAGKLLPHI 367

Query: 362 EGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTS--IRFGIGRFT-TEAE 418
             +          +   +   +  +    + R     + +   +  +R  I R T T+  
Sbjct: 368 PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTH 427

Query: 419 VDRAIELTVKQVEKLREMSPLYEMVKE 445
           +D  IE   K V++            E
Sbjct: 428 MDFIIE-AFKHVKENAANIKGLTFTYE 453

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 Length = 359

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 42/187 (22%)

Query: 66  TTPVDPRVLDAML---PFYLSRYGN-PHSRTHLFGWESEVAVETARSQIADLIGASPKEI 121
           +  + P++LD M        + YG   H                A   I +L+     ++
Sbjct: 23  SVGMHPKILDLMARDNMTQHAGYGQDSH-------------CAKAARLIGELLERPDADV 69

Query: 122 IFTSGATESNNVSIKGVMHFYKDKKRH--VITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
            F SG T++N ++    +      +    VI TQ  H         ++  G ++   P  
Sbjct: 70  HFISGGTQTNLIACSLAL------RPWEAVIATQLGH-ISTHETGAIEATGHKVVTAP-C 121

Query: 180 ADGIVNLDELRAAIRPD-------TGLISVMAVNN--EIGVIQPMEEIGQI---CKEFKI 227
            DG + + ++ +A+  +         L+ +   +N  E+G     +E+  I   CKE  +
Sbjct: 122 PDGKLRVADIESALHENRSEHMVIPKLVYI---SNTTEVGTQYTKQELEDISASCKEHGL 178

Query: 228 PFHTDAA 234
               D A
Sbjct: 179 YLFLDGA 185

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* Length = 393

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 33/192 (17%), Positives = 68/192 (35%), Gaps = 33/192 (17%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G ++  +       ++LDE+R A+      + +     +   GV+Q +E +G +C +   
Sbjct: 117 GADVRVVKSKVGQSLSLDEIRDALLIHKPSV-LFLTQGDSSTGVLQGLEGVGALCHQHNC 175

Query: 228 PFHTDAAQALGKIPVDVEKWNV-----------------SLMSLSGHKIYGPKGVGALYM 270
               D   +LG  P+ +++W +                 + +S S       + V     
Sbjct: 176 LLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFS------HRAVERYKR 229

Query: 271 RRRPR------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRIT 323
           R          + +     G      I   T+ + L+ G   A  +A +E +     R  
Sbjct: 230 RNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHE 289

Query: 324 ALHDRLLNGIKE 335
               RL  G+++
Sbjct: 290 DCAKRLYRGLQD 301

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* Length = 393

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 37/194 (19%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMAVNNE--IGVIQPMEEIGQICKEF 225
           G  +  +         L E+   +          +  V+ E   GV+QP++  G++C  +
Sbjct: 121 GARVHQMIKKPGEHYTLQEVEEGLAQHKPVL---LFLVHGESSTGVVQPLDGFGELCHRY 177

Query: 226 KIPFHTDAAQALGKIPVDVEKWNV-----------------SLMSLSGHKIYGPKGVGAL 268
           +     D+  +LG +P+ +++  +                 SL+S +       K    +
Sbjct: 178 QCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFN------DKAKYKV 231

Query: 269 YMRRRPR------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKR 321
           Y R+         I     + G   E  +   T P   +     +  +  ++ ++   +R
Sbjct: 232 YSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRR 291

Query: 322 ITALHDRLLNGIKE 335
                  L   ++E
Sbjct: 292 HREATAHLHKHLQE 305

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 26/135 (19%)

Query: 122 IFTSGATESNNVSI--------------KGVMHFYKDKKRHVI--TTQTEHKCVLDSCRH 165
           +  S  +ES  +++              +          R V   + Q  H  V  +   
Sbjct: 149 VLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQA-HSSVEKAGLI 207

Query: 166 LQQEGFEITYLPVGADGIVNLDELRAAIRPDT--GLISVMAVNN----EIGVIQPMEEIG 219
                 ++ +LPV  +  +  + L+ AI  D   GL+ V          +     + E+G
Sbjct: 208 S---LVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELG 264

Query: 220 QICKEFKIPFHTDAA 234
            IC    +  H DAA
Sbjct: 265 PICAREGLWLHIDAA 279

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Length = 353

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 19/181 (10%)

Query: 170 GFEITYLPVGADGIVNLDELRAAI---RPDTGLISVMAVNNE--IGVIQPMEEIGQICKE 224
           G +   L       V+ + +  A+   R       V  V+ E   GV+ P E IG + KE
Sbjct: 97  GLDPEVLDFPPGEPVDPEAVARALKRRRYR----MVALVHGETSTGVLNPAEAIGALAKE 152

Query: 225 FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEP--- 280
               F  DA   LG +P  +    V        K    P G+  +      R        
Sbjct: 153 AGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRG 212

Query: 281 -----LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIK 334
                       ERG    T P  L      A ++  +E +    +R   ++  +L  +K
Sbjct: 213 WYLDLARVAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELK 272

Query: 335 E 335
            
Sbjct: 273 A 273

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 42/304 (13%), Positives = 92/304 (30%), Gaps = 41/304 (13%)

Query: 174 TYLPVGADGIVNLDELRAAIRPD----TGLISVMAVNNEIG----VIQPMEEIGQICKEF 225
             L +   G ++L +L+  I          I +    N  G     +  M  + ++ +  
Sbjct: 148 AGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAH 207

Query: 226 KIPFHTDAAQALG--------------KIPVDVEKWNVSL---MSLSGHKIYGPKGVGAL 268
            I    DA + +               K   ++     S     ++SG K       G L
Sbjct: 208 GIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFL 267

Query: 269 YMRRR---PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEM-DYDHKRITA 324
            M         +   ++  G    G  +G     + +G     E  + E  ++  K++  
Sbjct: 268 CMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAMAIGL---REAMQYEYIEHRVKQVRY 324

Query: 325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLL--MGLKEVAVSSGSACT 382
           L D+L     +     +V          +      ++  +          + V +G    
Sbjct: 325 LGDKL-----KAAGVPIVEPVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSM 379

Query: 383 SASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIELTVKQVEKLREMSPLYE 441
              +  +      G        ++R  I R   T A +D   +  + ++ + +E     +
Sbjct: 380 ERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVAD-GIIKLYQHKEDIRGLK 438

Query: 442 MVKE 445
            + E
Sbjct: 439 FIYE 442

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} Length = 359

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/108 (21%), Positives = 42/108 (38%), Gaps = 22/108 (20%)

Query: 173 ITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQPMEEIGQI---CKEFKI 227
           IT L +  A+ ++ +D++++   P    + +     EI G +   EE+ +I   C E  I
Sbjct: 114 ITPLLLGTANQLLTIDDIKSLREP-VSSVLIELPQREIGGQLPAFEELEKISEYCHEQGI 172

Query: 228 PFHTD------AAQALGKIPVDVEKW--NVSLMSLSGHKIYGPKGVGA 267
             H D            K   ++     +V + S         KG+G 
Sbjct: 173 SLHLDGARLWEITPFYQKSAEEICALFDSVYV-SFY-------KGIGG 212

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Length = 352

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 26/178 (14%), Positives = 55/178 (30%), Gaps = 17/178 (9%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G  +  L          +++            ++ V++E   G +  +  + +  KE   
Sbjct: 98  GLVVERLDYPYGDTPRPEDVAKE-GYAG----LLLVHSETSTGALADLPALARAFKEKNP 152

Query: 228 P--FHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEP---- 280
                 D   +L    V +E   V   +    K    P G+G + +  R   R++P    
Sbjct: 153 EGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYY 212

Query: 281 ---LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE 335
                    Q+ G  + T    L++   +  E     ++         +  L    +E
Sbjct: 213 LDLARELKAQKEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE 270

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} Length = 416

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 33/207 (15%), Positives = 65/207 (31%), Gaps = 48/207 (23%)

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKI 227
           G  +  L      + + +++   I+     I V  V+ E   G I P++ IG+ C+    
Sbjct: 109 GANVHMLECEWGTVFDPEDIIREIKKVKPKI-VAMVHGETSTGRIHPLKAIGEACRTEDA 167

Query: 228 PFHTDAAQALGKIPVDVEKWNV-----------------SLMSLSGHKIYGPKGVGALYM 270
            F  DA   +G   V V++W +                 + ++ +       +    +  
Sbjct: 168 LFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYN------ERVADVIAA 221

Query: 271 RRRPR--IRVEPLINGGGQERGIRS-------------------GTLPTPLIVGFGSACE 309
           R++    I  +         R I S                    T  T ++        
Sbjct: 222 RKKVERGIATQADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVR 281

Query: 310 IAKKE-MDYDHKRITALHDRLLNGIKE 335
           +  +E ++   +R       L  GIK 
Sbjct: 282 LVLEEGLETRFERHRHHEAALAAGIKA 308

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* Length = 450

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 32/209 (15%), Positives = 63/209 (30%), Gaps = 21/209 (10%)

Query: 139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTG 198
           +   + K +++I  + + K    S      E   I  +  G +   +L  + A I+ + G
Sbjct: 137 LRHKRPKAKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQ-ELG 195

Query: 199 LISVMAV-----NNEIGVIQPMEEIGQICKEFKIPFHTDAAQAL------GKIPVDVEKW 247
              ++ +          V   +EE+  IC  + IP   + A  L        I       
Sbjct: 196 PEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVG 255

Query: 248 NVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS 306
            +     S  K    P G   +     P I+    +  G            +P +    +
Sbjct: 256 RIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASA--------SPSLDVLIT 307

Query: 307 ACEIAKKEMDYDHKRITALHDRLLNGIKE 335
              +         K    +   L   +K+
Sbjct: 308 LLSLGCSGYRKLLKERKEMFVYLSTQLKK 336

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Length = 385

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 30/181 (16%)

Query: 184 VNLDELRAAIRPDTGLIS-VMAVNNE--IGVIQPMEEIGQICKEFKIP--FHTDAAQALG 238
           V L+ +   +  ++     V   + +    V+  ++ I Q  K+      F  DA  ++G
Sbjct: 124 VPLELITEKLSQNS--YGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIG 181

Query: 239 KIPVDVEKWNVSLMSLSG-HKIYG-PKGVG-----------ALYMRRRPRIR-------- 277
               + ++W V    L+   K  G P G+            AL   +   +         
Sbjct: 182 CEEFEFDEWGVDFA-LTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRR 240

Query: 278 VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEK 336
             P++      +G    T P  LI     A +   +E +         + D   + +   
Sbjct: 241 WTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG 300

Query: 337 L 337
           L
Sbjct: 301 L 301

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} Length = 501

 Score = 43.9 bits (103), Expect = 7e-05
 Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 19/154 (12%)

Query: 139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG---IVNLDELRAAIRP 195
           +   + K +++I  + + K    S       GFE   +    +G     +L  + A ++ 
Sbjct: 155 LRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGDELRTDLKAVEAKVQ- 210

Query: 196 DTGLISVMAVNNEIGVIQP-----MEEIGQICKEFKIPFHTDAA------QALGKIPVDV 244
           + G   ++ +++      P     +EE+  IC  + IP   + A      + +  I    
Sbjct: 211 ELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGA 270

Query: 245 EKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIR 277
               +     S  K    P G   +       I+
Sbjct: 271 RVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQ 304

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 Length = 356

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 31/196 (15%), Positives = 54/196 (27%), Gaps = 44/196 (22%)

Query: 66  TTPVDPRVLDAML---PFYLSRYGN-PHSRTHLFGWESEVAVETARSQIADLIGASPKEI 121
                P V  A++         YG                     + +  ++      E+
Sbjct: 17  IAGASPEVAQALVKHSSGQAGPYGTDEL-------------TAQVKRKFCEIFER-DVEV 62

Query: 122 IFTSGATESNNVSIKGVMHFYKDKKRH--VITTQTEHKCVLDSCRHLQQEGFEITYLPV- 178
                 T +N + +  +            +      H    D C   +        + V 
Sbjct: 63  FLVPTGTAANALCLSAMT------PPWGNIYCHPASH-INNDECGAPEFFSNGAKLMTVD 115

Query: 179 GADGIVNLDELRAAIRPDTG---LISVMAV----NNEIGVIQPMEE---IGQICKEFKIP 228
           G    +++  LR   R   G         V      E+G I  ++E   IG +CK   + 
Sbjct: 116 GPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLG 175

Query: 229 FHTD------AAQALG 238
            H D      A  +LG
Sbjct: 176 LHMDGSRFANALVSLG 191

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT--GLISVMAVN 206
              +   H  V  +       G ++  +    +  +    L  AI  D   GLI   AV 
Sbjct: 185 GYCSDQAHSSVERAGLLG---GVKLRSVQ-SENHRMRGAALEKAIEQDVAEGLIPFYAVV 240

Query: 207 N----EIGVIQPMEEIGQICKEFKIPFHTDAA 234
                       ++E G +  +  +  H DAA
Sbjct: 241 TLGTTNSCAFDYLDECGPVGNKHNLWIHVDAA 272

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} Length = 379

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 24/174 (13%)

Query: 184 VNLDELRAAIRPDTGLISVMAVNNE--IGVIQPMEEIGQICKEFKIP---FHTDAAQALG 238
           V+++   A I  +     V A + E   G+I   E I  + +           D   A G
Sbjct: 122 VDIETAVAKI-KEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCI-ASG 179

Query: 239 KIPVDVEKWNV-SLMSLSGHKIYGPKGVGALYMRRRPRIRVE---------------PLI 282
            + +D+++  +  L+S            G + +      +VE                ++
Sbjct: 180 CVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIM 239

Query: 283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKE 335
                       T+PT  +  F  A   AK+   D        L +R+   + +
Sbjct: 240 RAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD 293

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} Length = 357

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 23/108 (21%)

Query: 173 ITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQPMEEIGQI---CKEFKI 227
           I  + V  AD ++ LDE++A   PD   + +     EI GV     E+  I   C+E  I
Sbjct: 113 IETILVGAADRLMTLDEIKAL--PDIACLLLELPQREIGGVAPAFSELETISRYCRERGI 170

Query: 228 PFHTD------AAQALGKIPVDVEKW--NVSLMSLSGHKIYGPKGVGA 267
             H D            K   ++     ++ + S         KG+G 
Sbjct: 171 RLHLDGARLFEMLPYYEKTAAEIAGLFDSIYI-SFY-------KGLGG 210

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Length = 347

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 10/67 (14%)

Query: 179 GADGIVNLDELRAAIRPD------TGLISV-MAVNNEIGVIQPMEEI---GQICKEFKIP 228
           G +G ++ D++R AIRP       T LI++    N   G + P+E I     I KE  I 
Sbjct: 109 GKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGIN 168

Query: 229 FHTDAAQ 235
            H D A+
Sbjct: 169 VHIDGAR 175

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* Length = 364

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQT--EHKCVLDSCR 164
              +A         I+  +G TE    SI  V    K  +R +I T    E+       R
Sbjct: 65  HQALARHHQVPASWILAGNGETE----SIFTVASGLKP-RRAMIVTPGFAEYG------R 113

Query: 165 HLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLI 200
            L Q G EI    +   DG    D +  A+ PD   +
Sbjct: 114 ALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCL 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	457
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	100.0
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	100.0
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	100.0
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	100.0
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	100.0
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	100.0
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	100.0
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	100.0
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	100.0
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	100.0
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	100.0
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	100.0
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	100.0
1iug_A	352	Putative aspartate aminotransferase; wild type, py	100.0
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	100.0
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	100.0
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	100.0
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	100.0
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	100.0
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	100.0
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	100.0
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	100.0
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	100.0
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	100.0
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	100.0
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	100.0
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	100.0
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	100.0
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	100.0
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	100.0
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	100.0
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	100.0
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	100.0
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	100.0
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	100.0
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	100.0
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	100.0
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	100.0
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	100.0
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	100.0
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	100.0
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	100.0
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	100.0
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	100.0
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	100.0
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	100.0
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	100.0
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	100.0
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	100.0
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	100.0
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	100.0
3nra_A	407	Aspartate aminotransferase; structural genomics, j	100.0
2fnu_A	375	Aminotransferase; protein-product complex, structu	100.0
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	100.0
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	100.0
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	100.0
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	100.0
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	100.0
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	100.0
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	100.0
1svv_A	359	Threonine aldolase; structural genomics, structura	100.0
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	100.0
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	100.0
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	100.0
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.98
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.98
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.98
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.98
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.98
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.98
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.98
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.98
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.98
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.98
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.98
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	99.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.97
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.97
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.97
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.97
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.97
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.97
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.97
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.97
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.97
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.97
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.97
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.97
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.97
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.97
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.97
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.97
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.97
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.97
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.97
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.97
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.97
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.97
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.97
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	99.97
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.97
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.97
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.97
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.97
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.97
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.97
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.96
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.96
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	99.96
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.96
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.96
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.96
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.96
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.96
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.96
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.96
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	99.96
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.96
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.96
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.96
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.96
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.96
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.96
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.96
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.96
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.96
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.96
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.96
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.96
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.96
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.96
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.96
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.96
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.96
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.95
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.95
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	99.95
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.95
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.95
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	99.95
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.95
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.95
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.95
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.95
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	99.95
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.95
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	99.95
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.95
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.95
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.95
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.95
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	99.95
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.94
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.94
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	99.94
1z7d_A	433	Ornithine aminotransferase; structural genomics co	99.94
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.94
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.94
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	99.94
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.94
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	99.94
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.94
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.94
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	99.94
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.94
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	99.94
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.94
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.94
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.89
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.94
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	99.94
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.94
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	99.93
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	99.93
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.93
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.93
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.93
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.93
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	99.93
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	99.93
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	99.93
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	99.93
3hmu_A	472	Aminotransferase, class III; structural genomics,	99.92
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.92
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.92
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	99.92
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.92
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	99.92
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.91
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	99.91
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	99.91
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	99.91
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.9
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.9
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.9
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	99.9
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	99.9
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	99.89
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.89
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.89
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.88
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	99.87
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.87
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.87
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.86
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.86
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.85
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	99.84
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	99.83
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	99.72
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	99.81
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.7

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=100.00  E-value=3e-49  Score=396.54  Aligned_cols=404  Identities=58%  Similarity=1.014  Sum_probs=354.2

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      ..+.+.+|||+++++++++++++++.+.+.  ..+++|++..+.+++...+...++++++++++|+++++++||+|||+|
T Consensus        18 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a   97 (423)
T 3lvm_A           18 RAMKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATES   97 (423)
T ss_dssp             --CCSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHH
T ss_pred             cccCCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHH
Confidence            445788999999999999999999999988  778888875677788888899999999999999988899999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++++++++...+.++|++|+++.++|+++..++..++..|++++.++.+.++.+|+++|++++++++++|++++++||+|
T Consensus        98 ~~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG  177 (423)
T 3lvm_A           98 DNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIG  177 (423)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTC
T ss_pred             HHHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcCCCcEEEEEeCCCCCCc
Confidence            99999998855545899999999999999998887777799999999998899999999999999999999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccc
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      .+.|+++|.++|++||+++|+|++++.+..+++....++|++++|+||++|+.|+|+++++++...++.+...++++...
T Consensus       178 ~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~~~~~~~~~~~~~~~~~  257 (423)
T 3lvm_A          178 VVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERG  257 (423)
T ss_dssp             BBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTT
T ss_pred             cccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhcCCCEEEechHHhcCCCCeEEEEEeccccCCCCccccCCccccc
Confidence            99999999999999999999999999998888887788999999999999998899999999888888887777776666


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL  370 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  370 (457)
                      +..++++...+.++.++++.....+++..++.+++++++.+.|++ ++++.+..++....+.++.+.+.+.+...+...|
T Consensus       258 ~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  336 (423)
T 3lvm_A          258 MRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMAL  336 (423)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEEESCSTTBCTTEEEEEETTSCHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEeCCccccCCCeEEEEeCCCCHHHHHHHH
Confidence            778899999999998898887777899999999999999999988 8899998876666677888888777778888888


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCCcc
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGIDIK  450 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  450 (457)
                      ..+.+.+|..|.+....+.+++..+|+......+.|||+++..++++|+++++++|+++++++++.+|+|...+++-|.+
T Consensus       337 ~~i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  416 (423)
T 3lvm_A          337 KDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLN  416 (423)
T ss_dssp             TTEECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSC
T ss_pred             hhheeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccC
Confidence            55999999999988888889999999876555689999999999999999999999999999999999999999999999


Q ss_pred             ccccccC
Q 040741          451 QIQWAQH  457 (457)
Q Consensus       451 ~~~~~~~  457 (457)
                      .++|.-|
T Consensus       417 ~~~~~~~  423 (423)
T 3lvm_A          417 SIEWAHH  423 (423)
T ss_dssp             C------
T ss_pred             chhhhcC
Confidence            9999765

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=100.00  E-value=2.5e-47  Score=376.57  Aligned_cols=379  Identities=41%  Similarity=0.755  Sum_probs=328.5

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++++|+|+|+.+++++
T Consensus         1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~   79 (382)
T 4hvk_A            1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG   79 (382)
T ss_dssp             -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHH
T ss_pred             CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHH
Confidence            479999999999999999999999888888886 6777777889999999999999999888899999999999999998


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +...+.++|++|+++.++|+++..++..+...|++++.++.+.++.+|+++|++++++++++|++++++||+|.+.|+++
T Consensus        80 ~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~  159 (382)
T 4hvk_A           80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEE  159 (382)
T ss_dssp             HHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHH
T ss_pred             hhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhccCceEEEEECCCCCceeeCCHHH
Confidence            87433368999999999999999998888778999999999988999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP  297 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  297 (457)
                      |.++|++||+ +|+|++|+.+..+++....++|++++|+||++|+.|+|+++++++.  ++.+...++....++..++++
T Consensus       160 i~~l~~~~~~-li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  236 (382)
T 4hvk_A          160 ISEVLAGKAA-LHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSEN  236 (382)
T ss_dssp             HHHHHSSSSE-EEEECTTTBTTBCCCHHHHTCSEEEEESGGGTSCTTCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCC
T ss_pred             HHHHHHHcCE-EEEEhHHhcCCCCCCchhcCCCEEEEeHHHhcCCCceEEEEEcCcc--CcCcccccCCCcCccccCCcC
Confidence            9999999999 9999999999887777666789999999999999899999999865  566666666666777888999


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741          298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV  375 (457)
Q Consensus       298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~  375 (457)
                      ...+.++.++++...+++++..++.+++++++.+.|.+ ++++.+..++....++++.+.+++.+..++...|  +||.+
T Consensus       237 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v  315 (382)
T 4hvk_A          237 VPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA  315 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTCCHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEeCCccccCCCEEEEEECCCCHHHHHHHHHHCCEEE
Confidence            99999998898877778899999999999999999998 8999998766555567788888777777777777  69999


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~  441 (457)
                      .+|..|.+....|++++..+|.++....++|||+++..+++||+++++++|+++++++++.+|+|+
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~  381 (382)
T 4hvk_A          316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR  381 (382)
T ss_dssp             BCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred             eeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            999999888778888899999876555689999999999999999999999999999999999886

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=100.00  E-value=3.8e-46  Score=368.58  Aligned_cols=379  Identities=41%  Similarity=0.751  Sum_probs=321.7

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++|||+++++++++++++++.+.+...+++|++ .+..+....+...++++++++++|++++++++|+|||+|+.+++.+
T Consensus         1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~   79 (382)
T 4eb5_A            1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIG   79 (382)
T ss_dssp             -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHH
T ss_pred             CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHH
Confidence            379999999999999999999999877778775 4555556678899999999999999888899999999999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +...+.++|++|+++.++|+++...+..+...|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|+++
T Consensus        80 l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~  159 (382)
T 4eb5_A           80 YAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEE  159 (382)
T ss_dssp             HHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCCTTEEEEECCSBCTTTCBBCCHHH
T ss_pred             HHhhccCCCCEEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhcCCCeEEEEeccCCCccccCCHHH
Confidence            87333368999999999999999888876667999999999888889999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCC
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP  297 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  297 (457)
                      |.++|++||++ |+|++|++|..++++..++.|++++|+||++|+.|+|+++++++.  ++.+...++++...+..++++
T Consensus       160 i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~~~di~~~s~sK~~g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~  236 (382)
T 4eb5_A          160 ISEVLAGKAAL-HIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEA--KLQPVILGGGQENGLRSGSEN  236 (382)
T ss_dssp             HHHHHTTSSEE-EEECTTTBTTBCCCHHHHTCSEEEEETGGGTCCSSCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCC
T ss_pred             HHHHHHHCCCE-EEEcchhcCCcccCccccCCCEEEeehHHhcCCCceEEEEEcccc--ccCceecCCCccccccCCCcc
Confidence            99999999999 999999988776665555789999999999999899999998763  344444444444456677888


Q ss_pred             hhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741          298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV  375 (457)
Q Consensus       298 ~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~  375 (457)
                      ...+.++.++++.+.++++++.++.+++++++.+.|++ ++++.+..++....++++.+.+++.+..++...|  +||.+
T Consensus       237 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v  315 (382)
T 4eb5_A          237 VPSIVGFGKAAEITAMEWREEAERLRRLRDRIIDNVLK-IEESYLNGHPEKRLPNNVNVRFSYIEGESIVLSLDMAGIQA  315 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTEEECSCSSSBCTTEEEEEETTSCHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCcccCCCCEEEEEeCCcCHHHHHHHHHHCCEEE
Confidence            88888888888887777889999999999999999999 8899887654333356677777766667777766  69999


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~  441 (457)
                      .+|..|.+....+++++..+|.++....+.|||+++..++++|+++++++|+++++++++++|.|.
T Consensus       316 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~  381 (382)
T 4eb5_A          316 STGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR  381 (382)
T ss_dssp             BCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred             eccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            999998887777888888888764444589999999989999999999999999999999998875

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=100.00  E-value=2e-43  Score=349.13  Aligned_cols=372  Identities=42%  Similarity=0.661  Sum_probs=304.1

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      +|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++|+|||+|+.++++++
T Consensus         3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~   81 (384)
T 1eg5_A            3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTV   81 (384)
T ss_dssp             EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHH
T ss_pred             EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhh
Confidence            89999999999999999999999877777775 56677777889999999999999998888999999999999999988


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                      .....++|++|+++.++|+++...+..+...|.+++.++.+.++.+|+++|++++++++++|++++++||+|.+.|+++|
T Consensus        82 ~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i  161 (384)
T 1eg5_A           82 AETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDV  161 (384)
T ss_dssp             HHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHHH
T ss_pred             hhhccCCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCCCCeEEEEECCCCCcccccCHHHH
Confidence            73212589999999999999988887666679999999998888899999999999999999999999999999999999


Q ss_pred             HHHHHhcC--CcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCC
Q 040741          219 GQICKEFK--IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL  296 (457)
Q Consensus       219 ~~l~~~~~--v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~  296 (457)
                      .++|++||  +++|+|++|++|..++++..++.|++++|+||++|+.|+|+++++++.  ++.+...+++.......+++
T Consensus       162 ~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~sK~~g~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  239 (384)
T 1eg5_A          162 TRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGV--PIRPLIHGGGQERGLRSGTQ  239 (384)
T ss_dssp             HHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTTS--CCCCSBCSSCTTTTTBCSCC
T ss_pred             HHHHHhcCCceEEEEEhhhhcCCcccCchhcCCCEEEecHHHhcCCCceEEEEEcCCC--ccccccccCcccccccCCCC
Confidence            99999999  999999999988777777666899999999999999889999998764  33444433333233456688


Q ss_pred             ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeE
Q 040741          297 PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVA  374 (457)
Q Consensus       297 ~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~  374 (457)
                      +...+.++..+++...+.+++..++++++++++.+.|.+  +++.+..++....+..+.+.++..+..++...|  +||.
T Consensus       240 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~  317 (384)
T 1eg5_A          240 NVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGIY  317 (384)
T ss_dssp             CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT--TTCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTEE
T ss_pred             ChHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCC--CCeEEeCCcccCCCCEEEEEeCCCCHHHHHHHHhhCCeE
Confidence            888888888888876667889999999999999999998  688887654444566777777655666777666  6999


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +.+|..|.+....++++++.+|+++....++|||+++..++++|+++++++|++++++++.
T Consensus       318 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~  378 (384)
T 1eg5_A          318 VSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSFLDL  378 (384)
T ss_dssp             CBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC--
T ss_pred             EeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            9999888766666777888888764334589999999889999999999999999987754

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=100.00  E-value=2.4e-44  Score=358.09  Aligned_cols=376  Identities=42%  Similarity=0.631  Sum_probs=303.8

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      .+..+.+|||+++++++++++++++.+.+...+++|++ .+.+++...+...++++++++++|++++++++|+|+|+|++
T Consensus        16 ~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~   94 (400)
T 3vax_A           16 PRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNN   94 (400)
T ss_dssp             ------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHH
T ss_pred             cccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHH
Confidence            45577899999999999999999999999888888876 56667777788999999999999998889999999999999


Q ss_pred             HHHHHhhhhhcCCCC-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          133 VSIKGVMHFYKDKKR-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       133 ~al~~~~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++++++..+..++|| +|+++.++|+++...+..+...|++++.++.+.++.+|++++++++++++++|++++++||+|.
T Consensus        95 ~~~~~l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~nptG~  174 (400)
T 3vax_A           95 IALLGLAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLRPDTLLVSLMHVNNETGV  174 (400)
T ss_dssp             HHHHTTHHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCCTTEEEEECCSBCTTTCB
T ss_pred             HHHHHHHHhhccCCCCEEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcCCCceEEEEECCCCCcee
Confidence            999988643336799 9999999999999988887777999999999988999999999999999999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEE-EecCCC----ccccccccCCc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALY-MRRRPR----IRVEPLINGGG  286 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~-~~~~~~----~~~~~~~~~~~  286 (457)
                      +.|+++|.++|++||+++|+|++|+.+..+.++... +|++++|+||++|+.|+|+++ ++++..    ..+.+...++.
T Consensus       175 ~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~-~d~~~~s~~K~~g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~  253 (400)
T 3vax_A          175 IQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP-IDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGG  253 (400)
T ss_dssp             BCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC-CSEEEEETGGGTSCSSCEEEEECBCSSSTTCBCCCCCSSCSSC
T ss_pred             eCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc-CcEEEEeHHHhCCCCceEEEEEecchhccccccccCceecCCC
Confidence            999999999999999999999999999888777766 899999999998988999999 887322    34556666666


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                      ...++..++++...+.++.++++...+++++..++.+++++++.+.|+  .+++.+..+.....++++.+.+++.+..++
T Consensus       254 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  331 (400)
T 3vax_A          254 QERKLRPGTLPVPLIMGLAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA--STSFQVNGDQDHVVPHILNLSFEDVDAEAF  331 (400)
T ss_dssp             TGGGTSCSCCCHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT--TTTCEECSCTTSBCTTEEEEECTTCCHHHH
T ss_pred             ceeeeecCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC--CCCEEEeCCcccCCCCEEEEEeCCCCHHHH
Confidence            666677889999999999899988877889999999999999999998  489998876655556677777776666666


Q ss_pred             Hhcc-cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL-KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       367 ~~~l-~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ...| +||.+.+|..|.+....|++++..+|+.+....++|||++ +..++++|+++++++|++++++
T Consensus       332 ~~~L~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~  399 (400)
T 3vax_A          332 LVTLKDLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKPS  399 (400)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC--------------------
T ss_pred             HHHHhcCcEEEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhcc
Confidence            5555 7899999998987777788889999887655568999999 9889999999999999988754

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=100.00  E-value=6.6e-41  Score=333.60  Aligned_cols=363  Identities=24%  Similarity=0.371  Sum_probs=299.3

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al  135 (457)
                      +.+|||++++++.++++.+++.+.+....++|++..+.+++...+...++++.+++++|. +++++++|+|+|+|+++++
T Consensus        23 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~  102 (406)
T 1kmj_A           23 PLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA  102 (406)
T ss_dssp             ECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred             ceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHH
Confidence            579999999999999999999999988777887656666777778899999999999998 6778999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +++.....++|++|+++.++|++...... .++..|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus       103 ~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~  182 (406)
T 1kmj_A          103 NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENP  182 (406)
T ss_dssp             HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCBCC
T ss_pred             HHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHhccCCeEEEEeCCCccccCcCC
Confidence            99831101789999999999998765433 23445999999999888889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ-------  287 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-------  287 (457)
                      +++|.++|++||+++|+|++|+.|..++++...++|++++|+||.+|+.|+|+++++++..+++.+...+++.       
T Consensus       183 l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~~~d~~~~s~~K~~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (406)
T 1kmj_A          183 LAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLS  262 (406)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHCCCSSCSTTSEEEEETT
T ss_pred             HHHHHHHHHHcCCEEEEEchhhcCCCCCcccccCCCEEEEEchhccCCCCcEEEEEeHHHHhhcCCcccCCCceeecccc
Confidence            9999999999999999999999987766655567899999999988998899999998777777665544431       


Q ss_pred             --------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          288 --------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       288 --------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                              ..++..+++++..++++.++++.+.+ ++++..++.+++++++.+.|++ ++++.+..+.  ..++++.+.+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~--~~~~~~~~~~  339 (406)
T 1kmj_A          263 EGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQ--NRLGVIAFNL  339 (406)
T ss_dssp             TEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCT--TCCSEEEEEE
T ss_pred             cccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhc-CCCeEEecCC--CcCCEEEEEE
Confidence                    12345678888888888788888765 5788999999999999999999 8899887653  1256666666


Q ss_pred             ccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          359 AYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       359 ~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ++.+..++...|  +||.+.+|..|.+      ..+..+|.     .+++||+++..++++|+++++++|+++++.+
T Consensus       340 ~~~~~~~~~~~l~~~gi~v~~g~~~~~------~~~~~~g~-----~~~iRis~~~~~t~~~i~~~~~~l~~~~~~l  405 (406)
T 1kmj_A          340 GKHHAYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNV-----PAMCRASLAMYNTHEEVDRLVTGLQRIHRLL  405 (406)
T ss_dssp             TTCCHHHHHHHHHHTTEECEEECTTCH------HHHHHTTC-----SCEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHhhCCcEEEeccccch------HHHHhcCC-----CCeEEEEeecCCCHHHHHHHHHHHHHHHHhh
Confidence            655566676666  6999999887753      22333443     2799999999999999999999999998765

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=100.00  E-value=8.1e-40  Score=327.34  Aligned_cols=367  Identities=23%  Similarity=0.362  Sum_probs=294.2

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~~~al  135 (457)
                      +.+||+.+.+++.++++.+++.+.+....++|++..+.++....+...++++.+++++|. +++++++|+|||+|+.+++
T Consensus        28 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~  107 (420)
T 1t3i_A           28 PLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLVA  107 (420)
T ss_dssp             ECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHH
T ss_pred             ceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHH
Confidence            479999999999999999999999987777776544555544457889999999999999 6778999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +++.....++|++|+++.++|++...... .++..|++++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus       108 ~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~  187 (420)
T 1t3i_A          108 YSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNP  187 (420)
T ss_dssp             HHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTCBBCC
T ss_pred             HHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCcEEEEeccCCCCCcCHHHHHHhhCCCceEEEEeCCcccccCcCC
Confidence            99821001789999999999999643222 22334999999999888889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc-------
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ-------  287 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~-------  287 (457)
                      +++|.++|++||+++|+|++|+.|..++++...+.|++++|+||++|+.|+|+++++++..+++.+...+++.       
T Consensus       188 l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (420)
T 1t3i_A          188 AEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAEVFFD  267 (420)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEEECSS
T ss_pred             HHHHHHHHHHcCCEEEEEhhhccCCccCchhhcCCCEEEEehhhhcCCCceEEEEEchHHHhhcCceecCCCcccccccc
Confidence            9999999999999999999999988766665667899999999988988899999998776666665544432       


Q ss_pred             -------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--cccceEEEE
Q 040741          288 -------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--RYIGNLNLS  357 (457)
Q Consensus       288 -------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~~  357 (457)
                             ..++..++++..+++++..+++.+.+ +++++.++.+++++++.+.|++ ++++.+..+...  ..++++.+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~  346 (420)
T 1t3i_A          268 HFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAALASFN  346 (420)
T ss_dssp             CEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSEEEEE
T ss_pred             ccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeCCCccccccCCEEEEE
Confidence                   12344578888888888778887765 5788999999999999999999 889988765321  135666666


Q ss_pred             EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ++..+..++...|  +||.+.+|..|..      ..+..+|.     .+++||+++..++++|+++++++|+++++++++
T Consensus       347 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~------~~~~~~g~-----~~~iRis~~~~~~~~~i~~~~~~l~~~~~~~~~  415 (420)
T 1t3i_A          347 VAGLHASDVATMVDQDGIAIRSGHHCTQ------PLHRLFDA-----SGSARASLYFYNTKEEIDLFLQSLQATIRFFSD  415 (420)
T ss_dssp             ETTBCHHHHHHHHHTTTEECBCSCTTCH------HHHHHTTC-----CCCEEEECCTTCCHHHHHHHHHHHHHHHHHTC-
T ss_pred             ECCCCHHHHHHHHHHCCeEEeeccccch------HHHHhcCC-----CCeEEEecCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            7655556666666  6999998877643      12233443     379999999989999999999999999887643

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.8e-40  Score=328.57  Aligned_cols=357  Identities=15%  Similarity=0.224  Sum_probs=292.0

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      +.+|||+++++++++++++++.+.+...+++|.+ .+.++....+...++++++++++|+++++++||+|+|+++.++++
T Consensus        26 ~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~  104 (406)
T 3cai_A           26 GWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAE  104 (406)
T ss_dssp             SCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHH
T ss_pred             CeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHH
Confidence            4899999999999999999999999876667643 455666667889999999999999987889999999999999998


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ++.... ++|++|+++.++|+++...+..+ +..|++++.++.+ .++.+|+++|++++++++++|++++++||+|.+.|
T Consensus       105 ~l~~~~-~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~  183 (406)
T 3cai_A          105 ASSSRA-GLGYEVIVSRLDDEANIAPWLRAAHRYGAKVKWAEVDIETGELPTWQWESLISKSTRLVAVNSASGTLGGVTD  183 (406)
T ss_dssp             HTGGGG-BTTCEEEEETTSCGGGTHHHHHHHHHHBCEEEEECCCTTTCCCCGGGHHHHCCTTEEEEEEESBCTTTCBBCC
T ss_pred             HHhhcc-CCCCEEEEcCCccHHHHHHHHHHHHhcCCeEEEEecCcccCCcCHHHHHHHhCCCceEEEEeCCcCCccccCC
Confidence            872101 78999999999999988777653 3359999999988 77889999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCce-EEEEecCCCcccccccc--CCcccccc
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVG-ALYMRRRPRIRVEPLIN--GGGQERGI  291 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G-~l~~~~~~~~~~~~~~~--~~~~~~~~  291 (457)
                      +++|.++|+++|+++|+|++|+.|..++++..+++|++++|+||++||. +| +++++++..+++.+...  ++.....+
T Consensus       184 l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~~g~~-~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~  262 (406)
T 3cai_A          184 LRAMTKLVHDVGALVVVDHSAAAPYRLLDIRETDADVVTVNAHAWGGPP-IGAMVFRDPSVMNSFGSVSTNPYATGPARL  262 (406)
T ss_dssp             CHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHHCCSEEEEEGGGGTSCS-CEEEEESCHHHHHTSCCCCSCTTCCGGGGG
T ss_pred             HHHHHHHHHHcCCEEEEEcccccCCCCCCchhcCCCEEEeehhhhcCCC-cCeEEEEehHHHhhcCCcccCCCCCccccc
Confidence            9999999999999999999999988777666667999999999988876 78 99998876666655432  22233445


Q ss_pred             ccCCCChhHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          292 RSGTLPTPLIVGFGSACEIAKK---------------EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       292 ~~~t~~~~~~~al~~al~~~~~---------------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ..++++...+.++.++++...+               .++++.++.+++++++.+.|++ ++++.+..+.... .+++.+
T Consensus       263 ~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~-~~~~~~  340 (406)
T 3cai_A          263 EIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS-LPLVMLIGRPEAQ-IPVVSF  340 (406)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTEEECCCCSSB-CSEEEE
T ss_pred             cCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc-CCCeEEcCCcccc-CCEEEE
Confidence            6788999988888888887765               3688889999999999999999 8899887654333 346677


Q ss_pred             EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+++.+..++...|  +||.+.+|.        +..++..+|...  ..+.|||+++..++++|+++++++|++
T Consensus       341 ~~~~~~~~~~~~~L~~~gi~v~~g~--------~~~~~~~~g~~~--~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          341 AVHKVPADRVVQRLADNGILAIANT--------GSRVLDVLGVND--VGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             EETTBCHHHHHHHHHHTTEECEECC--------SCHHHHHHTTTT--TTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             EECCcCHHHHHHHHHHCCcEEecCC--------hHHHHHHcCCCC--CCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            77665666676666  689888775        223555666542  247999999999999999999999875

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=100.00  E-value=4.4e-40  Score=330.97  Aligned_cols=379  Identities=36%  Similarity=0.593  Sum_probs=304.0

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ....+.+|||+++++++++++++++.+.+...+++|++ .+..+....+...++++++++++|+++++++||+|+|+|++
T Consensus        14 ~~~~~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~   92 (432)
T 3a9z_A           14 SPPNRKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSS-SYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNN   92 (432)
T ss_dssp             ----CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHH
T ss_pred             CCCCCcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCcc-CcHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHH
Confidence            33467899999999999999999999999877778774 45555566688899999999999998888999999999999


Q ss_pred             HHHHHhhhhhc----CCC-------------CEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCC-CCCCCHHHHHHhc
Q 040741          133 VSIKGVMHFYK----DKK-------------RHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGA-DGIVNLDELRAAI  193 (457)
Q Consensus       133 ~al~~~~~~~~----~~g-------------~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~-~~~~d~~~le~~i  193 (457)
                      ++++++...+.    ++|             ++|+++..+|+++..++..+ +..|.+++.++.+. ++.+|+++|++++
T Consensus        93 ~~~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i  172 (432)
T 3a9z_A           93 LVIHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAV  172 (432)
T ss_dssp             HHHHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTC
T ss_pred             HHHHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhc
Confidence            99998852110    255             47778888888888777655 44699999999875 7789999999999


Q ss_pred             CCCceEEEEeccccccccccChHHHHHHHHhcC----------CcEEEehhhhcCCCcccCCCCcccEEEeccccccCCC
Q 040741          194 RPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK----------IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPK  263 (457)
Q Consensus       194 ~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~----------v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~  263 (457)
                      ++++++|++++++||+|.+.|+++|.++|++++          +++|+|++|+.|..++++...++|++++|+||++|+.
T Consensus       173 ~~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~~~d~~~~s~~K~~g~~  252 (432)
T 3a9z_A          173 RPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR  252 (432)
T ss_dssp             CTTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHHCCSEEEEEGGGTTCCS
T ss_pred             cCCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhcCCCEEEEehhHhcCCc
Confidence            999999999999999999999999999999999          9999999999887766655557899999999998987


Q ss_pred             CceEEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe--
Q 040741          264 GVGALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV--  340 (457)
Q Consensus       264 G~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--  340 (457)
                       +|+++++++. ..++.+...++++...+..++++...+.++.++++...+++++..++.+++++++.+.|.+ ++++  
T Consensus       253 -~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~  330 (432)
T 3a9z_A          253 -IGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEA-EFGKRI  330 (432)
T ss_dssp             -CEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHGGGE
T ss_pred             -ceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-ccCCcE
Confidence             8999999875 4556666666655556677899999888888899887777889999999999999999988 5553  


Q ss_pred             EEeCCC--CCcccceEEEEEccc--cchHHHhcccCeEecccCccCCCC-CChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          341 VVNGSM--ERRYIGNLNLSFAYV--EGESLLMGLKEVAVSSGSACTSAS-LEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       341 ~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~l~~i~~~~g~~~~~~~-~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      .+.++.  ....+.++.|.+...  +...+...+.++.+..|..|.+.. ..+...+...|+......++|||+++.+++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t  410 (432)
T 3a9z_A          331 HLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTT  410 (432)
T ss_dssp             EESSCCTTCCBCTTEEEEEECSTTCCHHHHHHHCSSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCC
T ss_pred             EEeCCCCcccCCCCEEEEEeCCCCCcHHHHHHHhcCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCC
Confidence            333431  223455777777642  455666677899999998886532 234456777777543345899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~  434 (457)
                      ++|+++++++|++++++++
T Consensus       411 ~eei~~~~~~l~~~~~~~~  429 (432)
T 3a9z_A          411 RAEVDLIVQDLKQAVNQLE  429 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            9999999999999988765

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=100.00  E-value=6.1e-41  Score=329.49  Aligned_cols=340  Identities=13%  Similarity=0.077  Sum_probs=257.9

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCC--ccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR--THLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNV  133 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~  133 (457)
                      .+||++++++++|++|+++|.+++.+.++||.+.  .+..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++
T Consensus        27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~  106 (386)
T 3qm2_A           27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG  106 (386)
T ss_dssp             CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred             cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence            3799999999999999999999998888887652  223456667899999999999999964 46898 6999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCC-CCHHHHHHhcCCCceEEEEeccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGI-VNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~-~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++.++.    ++++++++....+.+. .....+++.| ++++++++  .+|. +|+++++.+++++|++|++++..|.+|
T Consensus       107 ai~~l~----~~gd~v~~~~~~~~~~-~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG  180 (386)
T 3qm2_A          107 VPLNLL----GDKTTADYVDAGYWAA-SAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG  180 (386)
T ss_dssp             HHHHHC----TTCCEEEEEESSHHHH-HHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred             HHHhcc----CCCCeEEEEeCCHHHH-HHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence            999987    7889887655555554 3445556779 99999988  5665 788999999999999999999999999


Q ss_pred             cc-cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCcccccccc-----C
Q 040741          211 VI-QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN-----G  284 (457)
Q Consensus       211 ~~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~-----~  284 (457)
                      .+ .|+++|.     +|+++++|++|++|..++|+.+++  ++++|.||++||+|+|+++++++..+++.+...     +
T Consensus       181 ~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~~--~~~~s~hK~lGP~G~g~l~v~~~~~~~~~~~~p~~~~~~  253 (386)
T 3qm2_A          181 IAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRYG--VIYAGAQKNIGPAGLTLVIVREDLLGKAHESCPSILDYT  253 (386)
T ss_dssp             EECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGCS--EEEEETTTTTCCTTEEEEEEEGGGCSCCCTTSCGGGCHH
T ss_pred             EecCchhhhc-----CCCEEEEEcccccCCCCCCccccC--EEEEecccccCCCccEEEEECHHHHhhhcccCCcHHHHH
Confidence            96 8999885     799999999999999999998865  677999998899999999999998776664322     1


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--  360 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  360 (457)
                      ..++.+.+++|+|+..++++.+|++++.+  +++++.++.+++++++++.|.+ ++.+....+++.+.+.++.|.+++  
T Consensus       254 ~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~rs~~iv~f~~~~~~  332 (386)
T 3qm2_A          254 VLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDN-SDFYRNDVAQANRSRMNVPFQLADNT  332 (386)
T ss_dssp             HHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT-CSSEECCBCGGGBCSSEEEEEESSGG
T ss_pred             HHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-CCCcccCCCHHHcCceEEEEECCCcc
Confidence            12345567789999999999999999876  4999999999999999999998 632243334445566788888874  


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+ ..+...|  +||.+..|..|.                     +.+|+++..++|+||||+++++|+++.++.
T Consensus       333 ~~-~~~~~~L~~~gI~~~~g~~~~---------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~~  385 (386)
T 3qm2_A          333 LD-KVFLEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPIEGVKALTDFMIDFERRH  385 (386)
T ss_dssp             GH-HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             cc-HHHHHHHHHCCCEEeCCCCCc---------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHhc
Confidence            33 4555555  688887775542                     469999999999999999999999988763

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=100.00  E-value=2e-39  Score=316.81  Aligned_cols=342  Identities=15%  Similarity=0.069  Sum_probs=278.4

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCC--ccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR--THLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~al  135 (457)
                      -||.+++.++|++|+++|.+++.+.++||.+.  .+..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++++
T Consensus        15 ~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~   94 (377)
T 3e77_A           15 TENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVP   94 (377)
T ss_dssp             CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHH
Confidence            46677788999999999999998888887653  134466778999999999999999975 46999 589999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      .++...  ++||++++....|.+. ...+.++..|+.+++++++.++..++++++.+++++|++|++++..|.+|.+.|+
T Consensus        95 ~~l~~~--~~Gd~v~~~~~g~~~~-~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi  171 (377)
T 3e77_A           95 LNLIGL--KAGRCADYVVTGAWSA-KAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF  171 (377)
T ss_dssp             HHHGGG--STTCEEEECCCSHHHH-HHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS
T ss_pred             HhccCC--CCCCeEEEEECCHHHH-HHHHHHHHhCCceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh
Confidence            998731  2489998877777665 4456677789988888887666678888888899999999999999999999998


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC-----ccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG-----GQERG  290 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~-----~~~~~  290 (457)
                           +|+++|+++++|++|++|..++++.+++  ++++|.||++||+|+|++++++++.+++.+.....     ..+.+
T Consensus       172 -----i~~~~~~~~~vD~~q~~g~~~id~~~~~--~~~~s~~K~~gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~  244 (377)
T 3e77_A          172 -----IPDVKGAVLVCDMSSNFLSKPVDVSKFG--VIFAGAQKNVGSAGVTVVIVRDDLLGFALRECPSVLEYKVQAGNS  244 (377)
T ss_dssp             -----CCCCTTCCEEEECTTTTTSSCCCGGGCS--EEEEEGGGTTSCTTCEEEEEETTSCSCCCTTSCGGGCHHHHHTTT
T ss_pred             -----hhccCCCEEEEEcccccCCCCCchhhcC--EEEEecccccCCCccEEEEEcHHHHhhccCCCCchhhHHHHhhcC
Confidence                 5788999999999999999999998765  68899999889999999999999887766433221     12234


Q ss_pred             cccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceEEEEEccccc-h--
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNLNLSFAYVEG-E--  364 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~--  364 (457)
                      .+++|+++..++++.+|++++.+  +++++.++.+++++++++.|.+ ++++.+.. +++.+.+.++.|.++++++ .  
T Consensus       245 ~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~  323 (377)
T 3e77_A          245 SLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDN-SQGFYVCPVEPQNRSKMNIPFRIGNAKGDDAL  323 (377)
T ss_dssp             TCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSEECCSCGGGBCSSEEEEEESSTTCCHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHh-cCCceecCCCHHHcCCcEEEEEcCCCCCchhH
Confidence            56789999999999999998876  4999999999999999999999 88888643 2334556678888887544 2  


Q ss_pred             --HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          365 --SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       365 --~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        .++..+  +||.+.+|..+                     .+.+|+|+..++|+||||+++++|++++++.
T Consensus       324 ~~~~l~~l~~~Gi~~~~g~~~---------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~~  375 (377)
T 3e77_A          324 EKRFLDKALELNMLSLKGHRS---------------------VGGIRASLYNAVTIEDVQKLAAFMKKFLEMH  375 (377)
T ss_dssp             HHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEeCCCCc---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHc
Confidence              344444  68887766421                     1579999999999999999999999998763

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=100.00  E-value=2.8e-38  Score=313.54  Aligned_cols=346  Identities=14%  Similarity=0.124  Sum_probs=278.2

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      +..++.+|||++++.++++++++++.+.+..     +     .++...+...++++++++++|++++++++|+|||+|+.
T Consensus         4 p~~~~~~yl~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~   73 (392)
T 2z9v_A            4 PEHADPVITLTAGPVNAYPEVLRGLGRTVLY-----D-----YDPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLE   73 (392)
T ss_dssp             CTTSCCSEECSSSCCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHH
T ss_pred             ccCCCcceeecCCCcCCCHHHHHHHhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHH
Confidence            3456779999999999999999998877642     1     13345578889999999999998888999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--CCCceEEEEeccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI--RPDTGLISVMAVNNEIG  210 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i--~~~t~li~i~~~~~~~G  210 (457)
                      ++++++.    ++|++|+++.++|++.. ....++..|++++.++.+.++.+|++++++++  .+++++|++++++||+|
T Consensus        74 ~~~~~~~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG  148 (392)
T 2z9v_A           74 AAAASLI----SPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSG  148 (392)
T ss_dssp             HHHHHHC----CTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGT
T ss_pred             HHHHHhc----CCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCc
Confidence            9999986    89999999999998874 33444555999999999888889999999999  46889999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc------
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN------  283 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~------  283 (457)
                      .+.|+++|.++|++||+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+...      
T Consensus       149 ~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~  228 (392)
T 2z9v_A          149 TINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASM  228 (392)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSST
T ss_pred             eeccHHHHHHHHHHcCCeEEEEcccccCCcccccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCcee
Confidence            999999999999999999999999999888777766678999999999 6788899999999876555543211      


Q ss_pred             -C-----Cc-cccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceE
Q 040741          284 -G-----GG-QERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNL  354 (457)
Q Consensus       284 -~-----~~-~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~  354 (457)
                       +     .+ +......++++...+.++.++++...+. +++..++.+++++++.+.|.+ + ++.+..++. .....++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~  306 (392)
T 2z9v_A          229 LSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTA-M-GLSVWAASDSIASPTTT  306 (392)
T ss_dssp             TCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCTTEE
T ss_pred             ccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCCccccCCceE
Confidence             0     00 1223456788888888888888887665 889999999999999999998 6 777665221 2235556


Q ss_pred             EEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~  429 (457)
                      .+.++ +.+..++...|  + ||.+.+|..+.                   ..+.+||++ +..++++|+++++++|+++
T Consensus       307 ~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~-------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~  367 (392)
T 2z9v_A          307 AVRTPDGVDEKALRQAARARYGVVFSSGRGET-------------------LGKLTRIGHMGPTAQPIYAIAALTALGGA  367 (392)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHhcCCEEEecCCCCC-------------------CCCeEEEeCcccccCHHHHHHHHHHHHHH
Confidence            66664 45566777766  4 99988775321                   237999996 4478999999999999999


Q ss_pred             HHHHH
Q 040741          430 VEKLR  434 (457)
Q Consensus       430 ~~~~~  434 (457)
                      +++++
T Consensus       368 ~~~~~  372 (392)
T 2z9v_A          368 MNAAG  372 (392)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            98764

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=100.00  E-value=1.7e-36  Score=300.26  Aligned_cols=345  Identities=18%  Similarity=0.299  Sum_probs=280.3

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCccchhhh-HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWE-SEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~-~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +...+.+|||.++.++.++++.+++.+.+.... .++.+  +. .|. ..+...++++.+++++|++++++++|+|||+|
T Consensus        12 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~-~y~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a   88 (390)
T 1elu_A           12 PGLANKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IA-ANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTG   88 (390)
T ss_dssp             GGGTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HH-HHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHH
T ss_pred             CCCCCeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hh-hHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCChHHH
Confidence            334568999999988999999999999886532 12221  11 222 24678899999999999988889999999999


Q ss_pred             HHHHHHHh-hhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          131 NNVSIKGV-MHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       131 ~~~al~~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      ++++++++ .    ++|++|+++.++|.++...+.. ++..|++++.++.+  .++.+|++++++++++++++|++++++
T Consensus        89 ~~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~~  164 (390)
T 1elu_A           89 CDIVLWGLDW----HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLL  164 (390)
T ss_dssp             HHHHHHHSCC----CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBC
T ss_pred             HHHHHhCCCC----CCCCEEEEecCcccHHHHHHHHHHHHhCcEEEEEcCCCCCCccchHHHHHHhcCCCceEEEEeccc
Confidence            99999998 5    7899999999999998775432 34459999999987  577899999999999999999999999


Q ss_pred             cccccccChHHHHHHHH----hcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc
Q 040741          207 NEIGVIQPMEEIGQICK----EFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL  281 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~----~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~  281 (457)
                      ||+|.+.|+++|.++|+    +||+++|+|++|+.|..++++...++|++++|+|| ++|+.|+|+++++++..+++.+.
T Consensus       165 nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~  244 (390)
T 1elu_A          165 WNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPT  244 (390)
T ss_dssp             TTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCC
T ss_pred             cCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhhcCCCEEEccccccccCCCceEEEEECHHhHhhcCCc
Confidence            99999999999999999    99999999999999988877767789999999999 78888999999998887777765


Q ss_pred             ccCCccc---------------cccccCCCChhHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          282 INGGGQE---------------RGIRSGTLPTPLIVGFGSACEIAKK-E-MDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       282 ~~~~~~~---------------~~~~~~t~~~~~~~al~~al~~~~~-~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                      ..|++..               ..+..++++...+.++.++++.+.+ + +++..++.+++++++.+.|.+ ++++.+..
T Consensus       245 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~  323 (390)
T 1elu_A          245 YVGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLA  323 (390)
T ss_dssp             SCCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESC
T ss_pred             cccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEec
Confidence            5544321               2345678888888888888887755 3 888999999999999999999 88998876


Q ss_pred             CCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          345 SMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      +. ...++++.+.++ +.+..++...|  +||.+.+|.                      ..++|||+++..++++|+++
T Consensus       324 ~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~----------------------~~~~iRis~~~~~~~~~i~~  380 (390)
T 1elu_A          324 TS-APQAGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------------------DPDCIRACCHYITDEEEINH  380 (390)
T ss_dssp             SS-CCSSSEEEEEECSSSCHHHHHHHHHHTTEECEEET----------------------TTTEEEEECCTTCCHHHHHH
T ss_pred             Cc-cccccEEEEEcCCCCCHHHHHHHHHHCCEEEEecC----------------------CCCeEEEecccCCCHHHHHH
Confidence            32 223566666664 34556676666  688887763                      12799999998899999999


Q ss_pred             HHHHHHH
Q 040741          422 AIELTVK  428 (457)
Q Consensus       422 ~~~~l~~  428 (457)
                      ++++|++
T Consensus       381 ~~~~l~~  387 (390)
T 1elu_A          381 LLARLAD  387 (390)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9998875

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-37  Score=303.15  Aligned_cols=331  Identities=13%  Similarity=0.099  Sum_probs=270.7

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      |+.++++.++++++++++.+.+..          ..++...+...++++++++++|++++++++|+|||+|+.++++++.
T Consensus         3 ~l~~~~p~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~   72 (352)
T 1iug_A            3 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF   72 (352)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC
T ss_pred             ccccCCCCCCCHHHHHHhccCCCC----------ccCHHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhcc
Confidence            788899999999999999887641          1233455678999999999999987789999999999999999987


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG  219 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~  219 (457)
                          ++|++|+++.++|+++. ....++..|++++.++.+.++.+|++++++   +++++|++++++||+|.+.|+++|.
T Consensus        73 ----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---~~~~~v~~~~~~nptG~~~~l~~i~  144 (352)
T 1iug_A           73 ----APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPEDVAK---EGYAGLLLVHSETSTGALADLPALA  144 (352)
T ss_dssp             ----CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTTSCC---SSCSEEEEESEETTTTEECCHHHHH
T ss_pred             ----CCCCeEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHhc---cCCcEEEEEEecCCcceecCHHHHH
Confidence                89999999999999986 445556669999999998888899998877   6789999999999999999999999


Q ss_pred             HHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccc---------cccCCcc
Q 040741          220 QICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEP---------LINGGGQ  287 (457)
Q Consensus       220 ~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~---------~~~~~~~  287 (457)
                      ++|++|  |+++|+|++|++|..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+         ...  ..
T Consensus       145 ~l~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  222 (352)
T 1iug_A          145 RAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELK--AQ  222 (352)
T ss_dssp             HHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHH--HH
T ss_pred             HHHHhhCCCCEEEEECCccccCcceeccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHHh--hc
Confidence            999999  999999999999888777666678999999999 7888899999998875544332         000  01


Q ss_pred             ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHH
Q 040741          288 ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESL  366 (457)
Q Consensus       288 ~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  366 (457)
                      ......++++...+.++.++++...+.+++..++++++++++.+.|++ + ++.+..+.  ..+.++.+.++ +.+..++
T Consensus       223 ~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~~~~~~~~~  298 (352)
T 1iug_A          223 KEGESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE-G-GLRPVPKR--FSPAVAAFYLPEGVPYARV  298 (352)
T ss_dssp             TTTCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS--BCTTCEEEECCTTCCHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C-CCcccccc--cCCeEEEEEcCCCCCHHHH
Confidence            123456788888888888888877666788999999999999999999 6 88876543  23556667765 4556677


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ...|  +||.+.+|..+                   ...+++||+++..++++|+++++++|+++++++
T Consensus       299 ~~~l~~~gi~v~~~~~~-------------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  348 (352)
T 1iug_A          299 KEAFAQRGAVIAGGQGP-------------------LKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  348 (352)
T ss_dssp             HHHHHTTTEECEECCGG-------------------GTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEEEEeCCCc-------------------cCCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence            7766  68988877522                   123799999999889999999999999998765

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-36  Score=300.81  Aligned_cols=340  Identities=16%  Similarity=0.234  Sum_probs=272.5

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al  135 (457)
                      ..+|||+.++.++++++.+++.+.+..          .++....+...++++.+++++|++ ++++++|+|||+|+.+++
T Consensus        19 ~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~   88 (386)
T 2dr1_A           19 PKYKLFTAGPVACFPEVLEIMKVQMFS----------HRSKEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASI   88 (386)
T ss_dssp             CCSEECCSSSCCCCHHHHHHTTSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHH
T ss_pred             ccceeecCCCcCCcHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHH
Confidence            357999999999999999998776532          122234578899999999999997 567999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--CCCceEEEEecccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI--RPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i--~~~t~li~i~~~~~~~G~  211 (457)
                      .++.    ++|++|+++.+.|++  +...++   ..|++++.++.+.++.+|+++|++++  .+++++|++++++||+|.
T Consensus        89 ~~l~----~~gd~vl~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~  161 (386)
T 2dr1_A           89 RNGV----SKGGKVLVTIIGAFGKRYKEVVE---SNGRKAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGV  161 (386)
T ss_dssp             HHHS----CTTCEEEEEESSHHHHHHHHHHH---HTTCEEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred             HHhh----cCCCeEEEEcCCchhHHHHHHHH---HhCCceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcch
Confidence            9987    899999999999988  444444   45999999999888889999999999  578999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccc-cCC----
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLI-NGG----  285 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~-~~~----  285 (457)
                      +.|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+||.++ +.|+|+++++++..+++.+.. .++    
T Consensus       162 ~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~  241 (386)
T 2dr1_A          162 LNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDI  241 (386)
T ss_dssp             ECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCH
T ss_pred             hCCHHHHHHHHHHcCCeEEEEccccccCccccccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeH
Confidence            99999999999999999999999999887777777789999999999655 557999999987655553211 010    


Q ss_pred             -----ccc-cccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          286 -----GQE-RGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       286 -----~~~-~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                           ... .....++++...+.++..+++...+.  +++..++.+++++++.+.|.+ + ++.+..+.....+.++.+.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~  319 (386)
T 2dr1_A          242 PLYVKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVRE-I-GLDILAEPGHESPTITAVL  319 (386)
T ss_dssp             HHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCTTCBCSSEEEEE
T ss_pred             HHHHHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCeeCcCccccCCceEEEE
Confidence                 001 12445678888888888888887653  789999999999999999999 6 7776654332345566666


Q ss_pred             Ec-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          358 FA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       358 ~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++ +.+..++...|  +||.+.+|..+.                   ..+++||+++.+++++|+++++++|++++++++
T Consensus       320 ~~~~~~~~~~~~~l~~~gi~v~~~~~~~-------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~  380 (386)
T 2dr1_A          320 TPPGIKGDEVYEAMRKRGFELAKGYGSV-------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINELK  380 (386)
T ss_dssp             CCTTCCHHHHHHHHHHTTEECEECCGGG-------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHcC
Confidence            65 34566676666  689888875321                   237999999998999999999999999998764

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=100.00  E-value=5.2e-37  Score=304.43  Aligned_cols=345  Identities=18%  Similarity=0.249  Sum_probs=276.6

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~  133 (457)
                      ..+.+|+++.++.++++++++++.+.+...          +.....+...++++++++++|++++ ++++|+|||+|+.+
T Consensus        16 ~~~~~~~~~~g~~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~   85 (393)
T 2huf_A           16 VTPNKLLMGPGPSNAPQRVLDAMSRPILGH----------LHPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEA   85 (393)
T ss_dssp             CCCCCEECSSSCCCCCHHHHHHTTSCCCCT----------TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHH
T ss_pred             CCCCeEEecCCCCCCCHHHHHHHHhhhccC----------CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHH
Confidence            345678999998899999999987765321          1223457889999999999999875 79999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~  212 (457)
                      +++++.    ++|++|+++.+.|++.. ....++..|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+
T Consensus        86 ~~~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~  160 (393)
T 2huf_A           86 TLCNLL----EDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVL  160 (393)
T ss_dssp             HHHHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEE
T ss_pred             HHHHHh----CCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCcccc
Confidence            999987    89999999999998853 3344455699999999988888999999999987 89999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc-------c--
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL-------I--  282 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~-------~--  282 (457)
                      .|+++|.++|++||+++|+|+++++|..++++..+++|++++|+|| ++|+.|+|+++++++..+++...       .  
T Consensus       161 ~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~  240 (393)
T 2huf_A          161 QGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYWD  240 (393)
T ss_dssp             CCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGC
T ss_pred             CCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEEc
Confidence            9999999999999999999999999888777777789999999999 57888999999987765554332       1  


Q ss_pred             -------cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          283 -------NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       283 -------~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                             .++.+..++..++++...+.++.++++...+ ++++..++.+++++++.+.|.+ + ++.+..+.....+.++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~  318 (393)
T 2huf_A          241 MSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQD-A-GFELYADPKDRLSTVT  318 (393)
T ss_dssp             HHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCTTEE
T ss_pred             hHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCccccCCcEE
Confidence                   1111223456678999999988889988765 4888999999999999999999 6 7776654322234466


Q ss_pred             EEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~  429 (457)
                      .+.++ +.+..++...|  + ||.+.+|..|.                   ..+++||++ +..++++++++++++|+++
T Consensus       319 ~~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~  379 (393)
T 2huf_A          319 TIKVPQGVDWLKAAQYAMKTYLVEISGGLGPT-------------------AGQVFRIGLMGQNATTERVDRVLQVFQEA  379 (393)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHH
T ss_pred             EEEcCCCCCHHHHHHHHHHhCCEEEecCcccc-------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHH
Confidence            66665 45566777766  3 89988876441                   237999999 5446799999999999999


Q ss_pred             HHHHHh
Q 040741          430 VEKLRE  435 (457)
Q Consensus       430 ~~~~~~  435 (457)
                      +++++.
T Consensus       380 ~~~~~~  385 (393)
T 2huf_A          380 VAAVKP  385 (393)
T ss_dssp             HHHHCC
T ss_pred             HHHcCC
Confidence            987753

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=100.00  E-value=2.2e-37  Score=301.51  Aligned_cols=332  Identities=15%  Similarity=0.065  Sum_probs=264.4

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCc--cchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRT--HLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNV  133 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~  133 (457)
                      ..|+-+++++++|++|+++|.+++.+.++||.+.-  +..+..+.+.++++|+.+++++|+++ .+++| |+|||+++++
T Consensus         5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~   84 (361)
T 3m5u_A            5 RKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAM   84 (361)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             ceEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHH
Confidence            45788889999999999999999988777776521  22356777999999999999999964 47888 9999999999


Q ss_pred             HHHHhhhhhcCCCC---EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCC--CCHHHHHHhcCCCceEEEEeccccc
Q 040741          134 SIKGVMHFYKDKKR---HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGI--VNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       134 al~~~~~~~~~~g~---~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~--~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      ++.++.     +++   +|++...+|.    ....++..|+++++++++.++.  +++++  + |+++|++|++++..|.
T Consensus        85 ~~~~~~-----~~~~~~~i~~~~~~~~----~~~~a~~~G~~v~~~~~~~~g~~~~~~~~--~-l~~~t~lv~~~~~e~~  152 (361)
T 3m5u_A           85 IPMNLA-----LNGVCEYANTGVWTKK----AIKEAQILGVNVKTVASSEESNFDHIPRV--E-FSDNADYAYICSNNTI  152 (361)
T ss_dssp             HHHHHC-----CSSCEEEEECSHHHHH----HHHHHHHTTCCEEEEEECTTTTSCSCCCC--C-CCTTSSEEEEESEETT
T ss_pred             HHHhcC-----CCCeEEEEeCCHHHHH----HHHHHHHcCCceEEEecccCcCCCcCChh--h-cCCCCCEEEEeCCCCC
Confidence            999886     233   3444443342    3344566699999999998774  56776  4 8999999999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccc----cccC
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP----LING  284 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~----~~~~  284 (457)
                      +|.+.|.     +++ +|+++++|++|++|..++++.+  +|++++|.||++||+|+|+++++++..+++.+    .+..
T Consensus       153 tG~~~~~-----i~~-~~~~~~vD~~q~~g~~~id~~~--~d~~~~s~~K~~gp~G~g~l~~~~~~~~~~~~~~~p~~~~  224 (361)
T 3m5u_A          153 YGTQYQN-----YPK-TKTPLIVDASSDFFSRKVDFSN--IALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPSMLN  224 (361)
T ss_dssp             TTEECSS-----CCC-CSSCEEEECGGGTTSSCCCCTT--EEEEEEETTTTSSCTTCEEEEEEHHHHHHHHTCCCCGGGC
T ss_pred             cceeCCc-----ccc-cCCEEEEEcccccCCCCCCccc--CCEEEEechhccCCCccEEEEEcHHHHhhhcCCCCCceee
Confidence            9999772     444 4999999999999999999985  79999999998899999999999987665544    2221


Q ss_pred             Cc--cccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEEc
Q 040741          285 GG--QERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       285 ~~--~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~  359 (457)
                      +.  .+.+.+++|+++..++++.+|++++.+  +++++.++.+++++++++.|++ ++++ .++.+++.+.+.++.|.++
T Consensus       225 ~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~-~~g~~~~~~~~~~rs~~ivsf~~~  303 (361)
T 3m5u_A          225 YLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL-SNGFYKGHADKKDRSLMNVSFNIA  303 (361)
T ss_dssp             HHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHT-STTSEEESSCGGGBCSSEEEEEES
T ss_pred             hHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-CCCeeeccCCHHHcCCeEEEEECC
Confidence            11  134566789999999999999999886  4999999999999999999999 8765 6665555555678888887


Q ss_pred             c---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          360 Y---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       360 ~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +   .+ .++...|  +||.+..|..+.                     +.+|+++..++|+||||+++++|+++.++
T Consensus       304 ~~~~~~-~~~~~~L~~~gI~~~~g~~~~---------------------g~iRiS~~~~~t~edId~l~~al~~~~~~  359 (361)
T 3m5u_A          304 KNKDLE-PLFVKEAEEAGMIGLKGHRIL---------------------GGIRASIYNALNLDQVKTLCEFMKEFQGK  359 (361)
T ss_dssp             SCTTHH-HHHHHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             Cchhhh-HHHHHHHHHCCCEEecCCCcc---------------------CeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence            5   22 3555555  688887764321                     56999999999999999999999998876

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=100.00  E-value=2.8e-37  Score=313.51  Aligned_cols=351  Identities=16%  Similarity=0.183  Sum_probs=275.8

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchh-hhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFG-WESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.+|||.++.++.++.+.+++.+.+.. +++.....|..+ ..+.+..+++++++++++|++++++++|+|+|++++++
T Consensus        66 ~~~iyld~~~~g~~p~~v~~~i~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~  144 (465)
T 3e9k_A           66 ENAIYFLGNSLGLQPKMVKTYLEEELDK-WAKIAAYGHEVGKRPWITGDESIVGLMKDIVGANEKEIALMNALTVNLHLL  144 (465)
T ss_dssp             CBCEECBTTTSCCEETTHHHHHHHHHHH-HHHHGGGGGTSSSSCGGGTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHH
T ss_pred             CCeEEecCCccCCChHHHHHHHHHHHHH-HHhhCCcccccCCccHHHhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHH
Confidence            4789999999998888888888777643 221111111111 11224567789999999999988999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEE-----EEEeCCCCCCCCHHHHHHhcC---CCceEEEEecc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEI-----TYLPVGADGIVNLDELRAAIR---PDTGLISVMAV  205 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v-----~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~~  205 (457)
                      ++++.... .++++|+++.++|++...++. .++..|+++     ...+.+.++.+|+++++++|+   +++++|+++++
T Consensus       145 ~~~~~~~~-~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~  223 (465)
T 3e9k_A          145 MLSFFKPT-PKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGV  223 (465)
T ss_dssp             HHHHCCCC-SSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESB
T ss_pred             HHHhcccc-CCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCc
Confidence            99986211 235569999999999877555 345568774     345666778899999999996   68999999999


Q ss_pred             ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccccc--CCCCceEEEEecCCCcccccccc
Q 040741          206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY--GPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~--g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      +|++|.+.|+++|.++|++||+++++|++|+.|..++++..+++|++++|+||++  ||.|+|+++++++..+++.+...
T Consensus       224 ~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~~~~~~~~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~  303 (465)
T 3e9k_A          224 HFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVELYLHDWGVDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALV  303 (465)
T ss_dssp             CTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSC
T ss_pred             ccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCCchhhcCCCEEEECcccccccCCCceEEEEEcHHHHhhcCCccc
Confidence            9999999999999999999999999999999999998888888999999999966  67789999999988777776655


Q ss_pred             CCcc------------------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC-------
Q 040741          284 GGGQ------------------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKL-------  337 (457)
Q Consensus       284 ~~~~------------------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~-------  337 (457)
                      ||..                  ..++..|+++...++++.++++.+.+ +++++.++..++++++.+.|++ +       
T Consensus       304 g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~  382 (465)
T 3e9k_A          304 GWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKH-NYGKDKAA  382 (465)
T ss_dssp             CGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HCC-----
T ss_pred             CccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh-hccccccc
Confidence            4211                  13456679999999999999998876 4899999999999999999988 5       


Q ss_pred             ---CCeEEeCCCCC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-
Q 040741          338 ---DGVVVNGSMER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-  410 (457)
Q Consensus       338 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-  410 (457)
                         +++.++.+.+. ..++++.+.++ .+..++...|  +||.+..+                       ..+.|||++ 
T Consensus       383 ~~~~g~~~~~p~~~~~~g~~~~~~~~-~~~~~l~~~L~~~Gi~v~~~-----------------------~~~~iRis~~  438 (465)
T 3e9k_A          383 TKKPVVNIITPSHVEERGCQLTITFS-VPNKDVFQELEKRGVVCDKR-----------------------NPNGIRVAPV  438 (465)
T ss_dssp             ----CEEECSCSSGGGBCSCEEEEEC-CTTCCHHHHHHTTTEECEEE-----------------------TTTEEEEBCC
T ss_pred             cCCCCeEEeCCCCHhhcccEEEEEec-CCHHHHHHHHHHCCEEEecC-----------------------CCCEEEEeCc
Confidence               78998875432 23566677776 4455666666  57776521                       127999999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +.+++.+||++++++|++++++.
T Consensus       439 ~~~~t~edi~~~~~~l~~~l~~~  461 (465)
T 3e9k_A          439 PLYNSFHDVYKFTNLLTSILDSA  461 (465)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhc
Confidence            78999999999999999988643

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=100.00  E-value=5e-37  Score=303.27  Aligned_cols=338  Identities=18%  Similarity=0.225  Sum_probs=271.4

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC--CcEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP--KEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~--~~i~~t~g~T~a~~~al~~  137 (457)
                      ++...++.++++++++++.+.+...          +++...+...++++++++++|+++  +++++|+|||+|+. ++.+
T Consensus         4 ~~~~~gp~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~   72 (384)
T 3zrp_A            4 LLLHVGPTTIKEDVLVAGLENNVGF----------TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTS   72 (384)
T ss_dssp             --CCSSCSCCCHHHHHHTTCCSCCT----------TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGG
T ss_pred             eeccCCCCCCCHHHHHHhhcccccc----------ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHh
Confidence            4556678899999999988765321          133446788999999999999987  78999999999999 8888


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~  216 (457)
                      +.    ++||+|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus        73 ~~----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~  147 (384)
T 3zrp_A           73 LL----KPNDKILVVSNGVFGDR-WEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVK  147 (384)
T ss_dssp             GC----CTTCEEEEECSSHHHHH-HHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHH
T ss_pred             hc----CCCCEEEEecCCcchHH-HHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHH
Confidence            87    89999999998887632 1233356699999999998889999999999987 899999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccc-cccccC----------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRV-EPLING----------  284 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~-~~~~~~----------  284 (457)
                      +|.++|++||+++|+|++|+.+..+.++...++|++++|+|| ++|+.|+|+++++++..+++ .+....          
T Consensus       148 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (384)
T 3zrp_A          148 DVINKIRKYVELIVVDGVSSVGAEEVKAEEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLRNWL  227 (384)
T ss_dssp             HHHHHHGGGEEEEEEECTTTTTTSCCCTTTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHHHHH
T ss_pred             HHHHHHHhcCCEEEEECcccccCccccccccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHHHHH
Confidence            999999999999999999999988888887889999999999 55788899999998765555 211100          


Q ss_pred             -Cccc----cccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEEE
Q 040741          285 -GGQE----RGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNLS  357 (457)
Q Consensus       285 -~~~~----~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  357 (457)
                       ....    ...+.|+++...+.++.++++.+.+. ++++.++.+++++++.+.|++ + ++.+..+. ....+.++.+.
T Consensus       228 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~  305 (384)
T 3zrp_A          228 PVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEA-L-GLEIVARRPESYSNTVTGVI  305 (384)
T ss_dssp             HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSCSSGGGBCSSEEEEE
T ss_pred             HHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-C-CCeEccCcccccCccEEEEE
Confidence             0000    22333688999999998899887664 899999999999999999999 6 77776654 22335566677


Q ss_pred             EccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          358 FAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       358 ~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ++..+..++...|  +||.+.+|..|..                    ++|||+++..++++|+++++++|++++++++.
T Consensus       306 ~~~~~~~~~~~~l~~~gi~v~~g~~~~~--------------------~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~~  365 (384)
T 3zrp_A          306 LKVADPQKVLAGTVNEGVEFAPGVHPAF--------------------KYFRIGHMGWVTPNDAIIAISVIERTLRKLGE  365 (384)
T ss_dssp             CSSSCHHHHHHHHHTTTCCCEECCCTTC--------------------CEEEEECCSSCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHCCEEEecCCCCCc--------------------CEEEEeccccCCHHHHHHHHHHHHHHHHHcCC
Confidence            7665667777776  6888887754321                    78999999999999999999999999998763

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=100.00  E-value=1.9e-36  Score=302.15  Aligned_cols=343  Identities=16%  Similarity=0.250  Sum_probs=278.6

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE-IIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-i~~t~g~T~a~~~a  134 (457)
                      ....+|..+++.++++++++++.+....          .+.....+...++++++++++|.++++ +++++|||+|++++
T Consensus        11 ~~~~~~~~pgp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~   80 (411)
T 3nnk_A           11 PPSRLLMGPGPINADPRVLRAMSSQLIG----------QYDPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAI   80 (411)
T ss_dssp             CCCCEEESSSCCCCCHHHHHHHTSCCCC----------TTCHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHH
T ss_pred             CccceeecCCCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHH
Confidence            4456888889999999999998765421          112334478899999999999998765 88999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~  211 (457)
                      ++++.    ++|++|++..+.|++  +...+   +..|++++.++.+.++.+|++++++++++ ++++|++++++|++|.
T Consensus        81 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~---~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~  153 (411)
T 3nnk_A           81 LVSAI----RPGDKVLVPVFGRFGHLLCEIA---RRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTM  153 (411)
T ss_dssp             HHHHC----CTTCEEEEEECSHHHHHHHHHH---HHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             HHHhc----CCCCEEEEecCCchHHHHHHHH---HHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcce
Confidence            99997    899999999999977  44443   44599999999998889999999999986 8999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccc------cC
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI------NG  284 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~------~~  284 (457)
                      +.|+++|.++|++||+++|+|++++.+..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+..      .|
T Consensus       154 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g  233 (411)
T 3nnk_A          154 LQPLAELGEICRRYDALFYTDATASLGGNPLETDVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRT  233 (411)
T ss_dssp             ECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCC
T ss_pred             eccHHHHHHHHHHcCCEEEEECCcccCCcccchhccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhcccccccccc
Confidence            99999999999999999999999999998888888889999999999 588889999999987655443321      11


Q ss_pred             Ccc-----------------------ccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          285 GGQ-----------------------ERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       285 ~~~-----------------------~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                      +++                       ..++..++++...+.++.++++...+. +++..++.+++++++.+.|++ + ++
T Consensus       234 ~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~  311 (411)
T 3nnk_A          234 DAHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQA-M-GL  311 (411)
T ss_dssp             TTCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TC
T ss_pred             cccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CC
Confidence            111                       223466788999999998899887765 899999999999999999999 5 77


Q ss_pred             EEeCCCCCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCC
Q 040741          341 VVNGSMERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTT  415 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t  415 (457)
                      .+..+.....+.++.+.++ +.+..++...|  + ||.+.+|..                   ....++|||++ +..++
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~-------------------~~~~~~iRi~~~~~~~~  372 (411)
T 3nnk_A          312 ETFGDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFG-------------------PLHGKVWRIGTMGYNAR  372 (411)
T ss_dssp             CBCSCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCG-------------------GGTTTEEEEECCGGGCS
T ss_pred             EeCCCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccC-------------------CCCCCEEEEeCccCcCC
Confidence            7766544445667777774 45667777766  4 999887632                   12237999998 76778


Q ss_pred             HHHHHHHHHHHHHHHHHHHhc
Q 040741          416 EAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~~~  436 (457)
                      ++|+++++++|++++++++..
T Consensus       373 ~~~i~~~~~~l~~~l~~~~~~  393 (411)
T 3nnk_A          373 KDCVMTTLSALEAVLNYLKFP  393 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999877543

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=100.00  E-value=1.1e-36  Score=299.50  Aligned_cols=344  Identities=15%  Similarity=0.197  Sum_probs=262.1

Q ss_pred             CCCcEEecC-CCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHH-HHHHhCCCCCcEEEeCChHHHHH
Q 040741           55 AGRPLYLDM-QATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQ-IADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        55 ~~~~i~l~~-~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ..+++|||+ .+.+++++++.+++.+.+...........+..++...+...+++++ +++++|.+  ++++++|+|+|+.
T Consensus         6 ~~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~--~v~~~~g~t~a~~   83 (371)
T 2e7j_A            6 TKDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKF   83 (371)
T ss_dssp             --CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHH
T ss_pred             CCCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC--EEEEeCChHHHHH
Confidence            456899999 5577899999999999886532111110223344455678899999 99999987  7999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEe--CCCCCCCCHHHHHHhcC-----CCceEEEEecc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP--VGADGIVNLDELRAAIR-----PDTGLISVMAV  205 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~--~~~~~~~d~~~le~~i~-----~~t~li~i~~~  205 (457)
                      ++++++.    ++|++|+++.++|+++..+++..   |++++.++  .+.++.+|+++++++++     +++++|+++++
T Consensus        84 ~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~  156 (371)
T 2e7j_A           84 AVMHSLA----KKDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYP  156 (371)
T ss_dssp             HHHHHHC----CTTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESS
T ss_pred             HHHHHHh----CCCCEEEEccCcchHHHHHHHHc---CCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECC
Confidence            9999987    89999999999999999886554   99999999  77778899999999998     78999999999


Q ss_pred             ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcc-cccccc
Q 040741          206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIR-VEPLIN  283 (457)
Q Consensus       206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~-~~~~~~  283 (457)
                      +||+|.+.|+++|.++|++||+++|+|++|+.+..+.++..+++|++++|+|| ++++.|+|+++++++..++ +.+...
T Consensus       157 ~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~  236 (371)
T 2e7j_A          157 DGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEK  236 (371)
T ss_dssp             CTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSS
T ss_pred             CCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhcccccc
Confidence            99999999999999999999999999999999887666655678999999999 5566689999999987777 766554


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRI--TALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      ++....+++.+++++..+.++.++++.+..   +..++.  +++++++.+.|.+ + ++.+..+... ..+++.+.++  
T Consensus       237 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~-~~~~~~~~~~--  308 (371)
T 2e7j_A          237 YKNKEVELLGCTARGATIITLMASFPHVRE---RIKRWDEEVEKARRFAAEMEK-L-GIKQLGDNPH-NHDLMFFHAE--  308 (371)
T ss_dssp             CTTSBGGGTTCCCCSHHHHHHHHHHHHHHH---HGGGHHHHHHHHHHHHHHHHH-T-TCEEESSSSC-CSSEEEEECH--
T ss_pred             CcccccccccCCcCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-c-CcEEecCCCc-cCceEEEECC--
Confidence            333333344678888888888788877654   556677  8889999999998 6 8888764321 2455666655  


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---CCCccCCCCeEE-EecCCC-CCHHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---GVDEDMAHTSIR-FGIGRF-TTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g~~~~~~~~~iR-i~~~~~-~t~edid~~~~~l~~~~~~  432 (457)
                      +..++...|  +||.+.+ .            ....   |.    ..+.+| |+++.. ++++++++++++|++++++
T Consensus       309 ~~~~~~~~l~~~gi~~~~-~------------~~~~~~~g~----~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~  369 (371)
T 2e7j_A          309 VLYEISKKAKGGRFFLYR-E------------LKSRKIHGI----KPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK  369 (371)
T ss_dssp             HHHHHHHHSSSGGGHHHH-H------------HHHTTEECS----CTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCEEEEe-c------------cccccccCC----CCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence            455666666  4665543 1            0111   21    137899 999988 8999999999999998865

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=100.00  E-value=7.7e-36  Score=296.09  Aligned_cols=337  Identities=17%  Similarity=0.242  Sum_probs=268.5

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~a  134 (457)
                      .+..||++.++.++++++.+++.+.+..          .++....+...++++++++++|++++ ++++|+|||+|++++
T Consensus        32 ~~~~~l~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~  101 (393)
T 1vjo_A           32 VPSRLLLGPGPSNAHPSVLQAMNVSPVG----------HLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEAT  101 (393)
T ss_dssp             CCCCEECSSSCCCCCHHHHHHHSSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHH
T ss_pred             CccceeccCCCCCCCHHHHHHHhccccc----------ccCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHH
Confidence            3457999999999999999999877542          12333457888999999999999877 899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcc--hHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKC--VLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~--~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~  211 (457)
                      ++++.    ++|++|++..+.|++  +...++   ..|++++.++.+.++.+|+++|++++++ ++++|++++++||+|.
T Consensus       102 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~  174 (393)
T 1vjo_A          102 IANAV----EPGDVVLIGVAGYFGNRLVDMAG---RYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGA  174 (393)
T ss_dssp             HHHHC----CTTCEEEEEESSHHHHHHHHHHH---HTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTE
T ss_pred             HHhcc----CCCCEEEEEcCChhHHHHHHHHH---HcCCceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcce
Confidence            99987    899999999999988  555544   4499999999988888999999999988 8999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc---ccCCcc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL---INGGGQ  287 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~---~~~~~~  287 (457)
                      +.|+++|.++|+++|+++|+|++|++|..++++...++|++++|+|| +.++.|+|+++++++..+++...   ..++..
T Consensus       175 ~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~  254 (393)
T 1vjo_A          175 RQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYL  254 (393)
T ss_dssp             ECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTT
T ss_pred             eccHHHHHHHHHHcCCEEEEECCccccCcCCcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceec
Confidence            99999999999999999999999999888877777789999999999 45566799999998765544211   111100


Q ss_pred             ---------cc-ccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          288 ---------ER-GIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       288 ---------~~-~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                               .. ....++++...+.++..+++...+ ++++..++++++++++.+.|++ + ++.+..+.....+.++.+
T Consensus       255 ~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~  332 (393)
T 1vjo_A          255 DMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED-I-GLSLHVEKEYRLPTLTTV  332 (393)
T ss_dssp             CHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEE
T ss_pred             CcHhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-c-CCcccCCccccCCcEEEE
Confidence                     01 122347888888888889988654 5889999999999999999998 6 777765432223455666


Q ss_pred             EEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHH
Q 040741          357 SFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       357 ~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~  430 (457)
                      .++ +.+..++...|  + ||.+.+|..|..                   .+++||++ +..++++++++++++|++++
T Consensus       333 ~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~~~~~~~~~i~~~~~~l~~~l  392 (393)
T 1vjo_A          333 CIPDGVDGKAVARRLLNEHNIEVGGGLGELA-------------------GKVWRVGLMGFNSRKESVDQLIPALEQVL  392 (393)
T ss_dssp             ECCTTCCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHhhCCEEEecCccccC-------------------CCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence            664 34566777766  5 999988875421                   27999995 45567888999999999875

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=100.00  E-value=5.9e-36  Score=299.02  Aligned_cols=339  Identities=16%  Similarity=0.220  Sum_probs=271.3

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEE-EeCChHHHHHHHHHHh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEII-FTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~-~t~g~T~a~~~al~~~  138 (457)
                      ++...++.++++++.+++.+...          +.+.....+...++++++++++|+++++++ +++|+|+|+.++++++
T Consensus        13 ~~~~p~p~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l   82 (416)
T 3isl_A           13 TIMTPGPVEVDPRVLRVMSTPVV----------GQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV   82 (416)
T ss_dssp             EECSSSSCCCCHHHHHHTTSCCC----------CTTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH
T ss_pred             eeecCCCcCcCHHHHHHhcccCC----------CCccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh
Confidence            55556677888888888766321          122334457889999999999999877655 9999999999999998


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccccccChHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      .    ++||+|++..+.|++.. ....++..|++++.++.+.++.+|+++++++++ +++++|++++++||+|.+.|+++
T Consensus        83 ~----~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~~  157 (416)
T 3isl_A           83 I----EPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKA  157 (416)
T ss_dssp             C----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCHH
T ss_pred             c----CCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCHHH
Confidence            7    89999999999988732 122334459999999999889999999999998 68999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccc---cCC--------
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI---NGG--------  285 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~---~~~--------  285 (457)
                      |.++|++||+++|+|++|+.|..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+..   .||        
T Consensus       158 i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~  237 (416)
T 3isl_A          158 IGEACRTEDALFIVDAVATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAA  237 (416)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCEEEEECCccccCCCcchhhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhccccccccccccccchh
Confidence            99999999999999999999998888888889999999999 688999999999987665554321   000        


Q ss_pred             --------------------ccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          286 --------------------GQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       286 --------------------~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                                          ....++..++++...+.++.++++...+. +++..++.+++++++.+.|.+ . ++.+..
T Consensus       238 ~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~  315 (416)
T 3isl_A          238 LSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKA-M-GLRLFG  315 (416)
T ss_dssp             ---CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBCS
T ss_pred             ccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCEecc
Confidence                                01334567788999999998999887765 899999999999999999999 4 887776


Q ss_pred             CCCCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH-H
Q 040741          345 SMERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE-V  419 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed-i  419 (457)
                      +.....+.++.+.++ +.+..++...|  + ||.+.+|..                   ....+++||+++.+.+.+| +
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~-------------------~~~~~~iRi~~~~~~~~~e~i  376 (416)
T 3isl_A          316 DDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFG-------------------PLAGKIWRIGTMGYSCRKENV  376 (416)
T ss_dssp             CGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCS-------------------TTTTTEEEEECCGGGCSHHHH
T ss_pred             CccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCC-------------------CCCCCEEEEecccCCCcHHHH
Confidence            544444567777774 45667777777  4 898887642                   1223799999977666666 9


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKLR  434 (457)
Q Consensus       420 d~~~~~l~~~~~~~~  434 (457)
                      ++++++|++++++++
T Consensus       377 ~~~~~~l~~~~~~~~  391 (416)
T 3isl_A          377 LFVLAGLEAVLLRHN  391 (416)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999998764

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=100.00  E-value=4.4e-35  Score=292.86  Aligned_cols=357  Identities=18%  Similarity=0.217  Sum_probs=271.2

Q ss_pred             cccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           50 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      +.++...+.+|||++++++.++++.+++.+.+...++++... ..+.....+...++++++++++|+++++++||+|+|+
T Consensus        21 ~~f~~~~~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~   99 (416)
T 1qz9_A           21 QQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTTSI   99 (416)
T ss_dssp             GGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCHHH
T ss_pred             HhCCCCCCeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHHHcCCCcccEEEeCChhH
Confidence            334445678999999999999999999999987655554321 0111112367889999999999998888999999999


Q ss_pred             HHHHHHHHhhhhh--cCCCCE-EEEcCCCCcchHHHHHHH-Hhc--CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEe
Q 040741          130 SNNVSIKGVMHFY--KDKKRH-VITTQTEHKCVLDSCRHL-QQE--GFEITYLPVGADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       130 a~~~al~~~~~~~--~~~g~~-vi~~~~~h~~~~~~~~~~-~~~--G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      ++.++++++..+.  +++|++ |+++..+|+++..++..+ ...  |++++.++.       ++++++++++++++|+++
T Consensus       100 al~~al~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~-------~~~l~~~i~~~~~~v~~~  172 (416)
T 1qz9_A          100 NLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGYTLRLVDS-------PEELPQAIDQDTAVVMLT  172 (416)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSCEEEEESS-------GGGHHHHCSTTEEEEEEE
T ss_pred             HHHHHHHhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCceEEEeCc-------HHHHHHHhCCCceEEEEe
Confidence            9998888765211  045665 677778999888776544 333  899999886       789999999999999999


Q ss_pred             ccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCc-eEEEEecCCCcccccc
Q 040741          204 AVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGV-GALYMRRRPRIRVEPL  281 (457)
Q Consensus       204 ~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~-G~l~~~~~~~~~~~~~  281 (457)
                      +++||+|.+.|+++|.++|++||+++|+|++|++|..++++..+++|++++|+||+ +++.|+ |+++++++..+++.+.
T Consensus       173 ~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~~~  252 (416)
T 1qz9_A          173 HVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQP  252 (416)
T ss_dssp             SBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCS
T ss_pred             ccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccCCC
Confidence            99999999999999999999999999999999998877666556789999999995 456667 9999999887777665


Q ss_pred             ccCC-cc---------------ccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCC--CeEE
Q 040741          282 INGG-GQ---------------ERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLD--GVVV  342 (457)
Q Consensus       282 ~~~~-~~---------------~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~  342 (457)
                      ..++ +.               ..++..++++...++++.++++.+. ++++++.++.+++++++.+.|.+.++  ++.+
T Consensus       253 ~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~  332 (416)
T 1qz9_A          253 LSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTL  332 (416)
T ss_dssp             CCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEE
T ss_pred             ccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEE
Confidence            4432 11               1245667889999998888998876 36788999999999999999988225  7888


Q ss_pred             eCCCCC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC-CCCCHHH
Q 040741          343 NGSMER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG-RFTTEAE  418 (457)
Q Consensus       343 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~-~~~t~ed  418 (457)
                      ..+... ...+++.+.++  +..++...|  +||.+...                       ..+.+||+++ ..++++|
T Consensus       333 ~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~gi~~~~~-----------------------~~~~lRis~~~~~~t~~~  387 (416)
T 1qz9_A          333 VTPREHAKRGSHVSFEHP--EGYAVIQALIDRGVIGDYR-----------------------EPRIMRFGFTPLYTTFTE  387 (416)
T ss_dssp             CSCSSGGGBCSEEEEECT--THHHHHHHHHTTTEECEEE-----------------------TTTEEEEECCTTTCCHHH
T ss_pred             eCCCCHHHcCCEEEEecC--CHHHHHHHHHhCCcEeccC-----------------------CCCeEEEeCcccCCCHHH
Confidence            765321 22445555544  355666666  57665311                       1279999998 4889999


Q ss_pred             HHHHHHHHHHHHHHHHhcChh
Q 040741          419 VDRAIELTVKQVEKLREMSPL  439 (457)
Q Consensus       419 id~~~~~l~~~~~~~~~~~~~  439 (457)
                      +++++++|++++++..-..|.
T Consensus       388 i~~~~~~l~~~~~~~~~~~~~  408 (416)
T 1qz9_A          388 VWDAVQILGEILDRKTWAQAQ  408 (416)
T ss_dssp             HHHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHhcccccccc
Confidence            999999999998865434444

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=100.00  E-value=1.3e-35  Score=289.58  Aligned_cols=332  Identities=18%  Similarity=0.204  Sum_probs=264.2

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++.++++.++++++++++.+.+..         + .++...+...++++++++++|.+  ++++++|+|||+|+.+++++
T Consensus         2 ~~~~~gp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~   71 (353)
T 2yrr_A            2 LLLTPGPTPIPERVQKALLRPMRG---------H-LDPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLAN   71 (353)
T ss_dssp             EECSSSSCCCCHHHHGGGGSCCCC---------T-TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHT
T ss_pred             ccCCCCCCCCCHHHHHHHhccccc---------c-cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHH
Confidence            456778889999999998877642         1 12344567899999999999985  56799999999999999998


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~  216 (457)
                      +.    +  ++|+++.++|+++ .....++..|++++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus        72 ~~----~--d~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~  144 (353)
T 2yrr_A           72 LD----R--GPVLVLVNGAFSQ-RVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE  144 (353)
T ss_dssp             CS----C--CCEEEEECSHHHH-HHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred             hc----C--CcEEEEcCCCchH-HHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence            86    5  7899999899886 33344456699999999988888999999999987 899999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCC---------c
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGG---------G  286 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~---------~  286 (457)
                      +|.++|++||+++|+|++|+++..+.++..+++|++++|+|| ++|+.|+|+++++++..+++.. ..++         .
T Consensus       145 ~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~-~~~~~~~~~~~~~~  223 (353)
T 2yrr_A          145 AIGALAKEAGALFFLDAVTTLGMLPFSMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTG-KRGWYLDLARVAEH  223 (353)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCC-CSCSTTCHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEcCcccccccccccccCceEEEecCcccccCCCceEEEEECHHHHHHhcc-CCCccccHHHHhhh
Confidence            999999999999999999998877766655578999999999 6788889999999876655542 0100         0


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccch
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGE  364 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  364 (457)
                      .......++++...+.++.++++...+. +++..++.+++++++.+.|++ + ++.+..++ ...+.++.+.++ +.+..
T Consensus       224 ~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~~~~~~~~~~~~~~~~~  300 (353)
T 2yrr_A          224 WERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKA-R-GFRPYPKA-SPLPTVLVVRPPEGVDAD  300 (353)
T ss_dssp             HTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCEESCSS-SBCTTEEEEECCTTCCHH
T ss_pred             hhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCccccCc-cCCCeEEEEECCCCCCHH
Confidence            1123445688888888888888877654 889999999999999999999 6 88887632 223455556664 44566


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH-HHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD-RAIELTVKQVE  431 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid-~~~~~l~~~~~  431 (457)
                      ++...|  +||.+.+|..|.                   ..+.+|++++...+++|++ +++++|+++++
T Consensus       301 ~~~~~l~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          301 RLVRALYAEGVAVAGGIGPT-------------------RGQVLRLGLMGEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             HHHHHHHHTTEECEECCGGG-------------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCEEEeCCcccc-------------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            777766  699998876442                   1278999998777889999 99999998875

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=100.00  E-value=1.7e-35  Score=293.87  Aligned_cols=347  Identities=16%  Similarity=0.198  Sum_probs=270.7

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al  135 (457)
                      +..|+.+.++.++++++.+++.+.+...          +.........++++.+++++|.+++ ++++|+|||+|+.+++
T Consensus        17 ~~~~~~~~~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~   86 (396)
T 2ch1_A           17 PEKIMMGPGPSNCSKRVLTAMTNTVLSN----------FHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAML   86 (396)
T ss_dssp             CCCBCCSSSSCCCCHHHHHHTTSCCCCT----------TCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CcceeecCCCCCCCHHHHHHhccccccC----------CChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHH
Confidence            3457777778889999999887654211          1223345688999999999999887 7999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~  214 (457)
                      .++.    ++|++|++..++|.++. ....++..|++++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|
T Consensus        87 ~~~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~  161 (396)
T 2ch1_A           87 SNLL----EEGDRVLIAVNGIWAER-AVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQP  161 (396)
T ss_dssp             HHHC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             HHhc----CCCCeEEEEcCCcccHH-HHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecC
Confidence            9987    89999999999999874 2233455699999999988888999999999987 8999999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccc-------ccC--
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPL-------ING--  284 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~-------~~~--  284 (457)
                      +++|.++|+++|+++|+|++|++|..++++..+++|++++|+|| ++|+.|+|+++++++.++.+...       ..+  
T Consensus       162 ~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (396)
T 2ch1_A          162 LEGVGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLL  241 (396)
T ss_dssp             CTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHH
T ss_pred             HHHHHHHHHHcCCEEEEEccccccCCccchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEechH
Confidence            99999999999999999999999988887777788999999999 67788899999987655443221       111  


Q ss_pred             -----C--ccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-CcccceEE
Q 040741          285 -----G--GQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYIGNLN  355 (457)
Q Consensus       285 -----~--~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~~~~~  355 (457)
                           +  .....+..++++...+.++.++++...+ ++++..++.+++++++.+.|.+ + ++.+..+.. ...+.++.
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~  319 (396)
T 2ch1_A          242 LLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-M-GLDIFVKDPRHRLPTVTG  319 (396)
T ss_dssp             HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-H-TCCBSSCSGGGBCTTEEE
T ss_pred             HHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-C-CCeeccCCccccCCceEE
Confidence                 0  0112345678888888888888887644 5888999999999999999998 5 777765433 22344666


Q ss_pred             EEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHH
Q 040741          356 LSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       356 ~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~  430 (457)
                      +.++ +.+..++...|  + ||.+.+|..|.                   ..+++||++ +..++++|+++++++|++++
T Consensus       320 ~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l  380 (396)
T 2ch1_A          320 IMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT-------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESL  380 (396)
T ss_dssp             EECCTTCCHHHHHHHHHHHHCBCCBCCCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred             EEcCCCCCHHHHHHHHHHhCCEEEecCcccc-------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHH
Confidence            6664 45667777766  3 88887765331                   237999999 55678999999999999998


Q ss_pred             HHHHhcChhHHH
Q 040741          431 EKLREMSPLYEM  442 (457)
Q Consensus       431 ~~~~~~~~~~~~  442 (457)
                      ++++   |.|++
T Consensus       381 ~~~~---~~~~~  389 (396)
T 2ch1_A          381 KATH---PDYIF  389 (396)
T ss_dssp             HHHC---TTCCC
T ss_pred             HHhC---ccEEe
Confidence            7653   54543

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=1.2e-34  Score=283.86  Aligned_cols=335  Identities=16%  Similarity=0.115  Sum_probs=264.6

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~  136 (457)
                      .++.+.++.++++++++++.+.+.+.. +.    .+ ......+...++++++++++|.+ ++++++|+|||+|+++++.
T Consensus         5 ~~~~~p~p~~~~~~v~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~   79 (362)
T 3ffr_A            5 KIYFTPGPSELYPTVRQHMITALDEKIGVI----SH-RSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQ   79 (362)
T ss_dssp             CEEECSSSCCCCTTHHHHHHHHHHTTTTTS----CT-TSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHH
T ss_pred             ceeccCCCcCCCHHHHHHHHHHhcCCccCc----CC-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHH
Confidence            467778888999999999988876422 11    11 23345578899999999999985 5679999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~  216 (457)
                      ++.    ++  .+++....|++. .....++..|++++.++.+.++.+|+++++  +++++++|++++++||+|.+.|++
T Consensus        80 ~l~----~~--~~i~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~~~~~~v~~~~~~nptG~~~~l~  150 (362)
T 3ffr_A           80 NCV----EK--KSFHCVNGSFSK-RFYEFAGELGREAYKEEAAFGKGFYPADIT--VPADAEIICLTHNETSSGVSMPVE  150 (362)
T ss_dssp             HHC----SS--EEEEEECSHHHH-HHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CCTTCCEEEEESEETTTTEECCHH
T ss_pred             hcc----CC--cEEEEcCcHHHH-HHHHHHHHhCCCeEEEecCCCCCCCHHHHh--ccCCccEEEEEcCCCCcceeCCHH
Confidence            988    56  544444444442 222344556999999999888889999998  888999999999999999999999


Q ss_pred             HHHHHHHhc-CCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCcc-------
Q 040741          217 EIGQICKEF-KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQ-------  287 (457)
Q Consensus       217 ~i~~l~~~~-~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~-------  287 (457)
                      +|.++|++| |+++|+|++|+.+..+.+...  +|++++|+||++| +.|+|+++++++.++++.+...|++.       
T Consensus       151 ~i~~la~~~p~~~li~D~a~~~~~~~~~~~~--~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~  228 (362)
T 3ffr_A          151 DINTFRDKNKDALIFVDAVSSLPYPKFDWTK--IDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGTYHTI  228 (362)
T ss_dssp             HHTTSGGGSTTSEEEEECTTTTTSSCCCTTS--CSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCSTTSH
T ss_pred             HHHHHHHhCCCCEEEEecccccCCcccChhH--CcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcccccH
Confidence            999999999 999999999999988776654  8999999999776 88999999998877766655443221       


Q ss_pred             -------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC-CCCcccceEEEEE
Q 040741          288 -------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS-MERRYIGNLNLSF  358 (457)
Q Consensus       288 -------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~  358 (457)
                             .++...++++...+.++..+++.+.+ +++++.++.+++++++.+.|++ +|++.+..+ +......++.+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~  307 (362)
T 3ffr_A          229 PSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIES-SKVFSFGVEDAKLRSMTTIVANT  307 (362)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-CSSEEESSSCGGGBCSSEEEEEE
T ss_pred             HHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH-ccCceeccCChhhcCCceEEEec
Confidence                   11223678888888888888887655 4889999999999999999999 889998763 2233455666676


Q ss_pred             ccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          359 AYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       359 ~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +. +..++...|  +||.+.+|..|.                   ..++|||+++..++++|+++++++|++++
T Consensus       308 ~~-~~~~~~~~l~~~gi~~~~g~~~~-------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          308 TM-LPGEINKILEPFDMAVGAGYGSK-------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             SS-CHHHHHHHHGGGTEEEEECSGGG-------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CC-CHHHHHHHHHHCCeEEecCcccc-------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            65 667777766  689998875442                   22799999999999999999999998764

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=100.00  E-value=4e-35  Score=290.53  Aligned_cols=340  Identities=15%  Similarity=0.236  Sum_probs=269.9

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKG  137 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~  137 (457)
                      -++.+.++.++++++++++.+....         + +.....+...++++++++++|.+.. ++++|+|||+|+.+++++
T Consensus        24 ~~~~~p~p~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~   93 (393)
T 3kgw_A           24 RLLLGPGPSNLAPRVLAAGSLRMIG---------H-MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFN   93 (393)
T ss_dssp             CEECSSSCCCCCHHHHHHTTCCCCC---------T-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHH
T ss_pred             ceeccCCCCCCCHHHHHHhcccccC---------c-ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHh
Confidence            4778888889999999998764321         1 1223346788999999999999765 499999999999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~  216 (457)
                      +.    ++|++|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++ ++++|++++++||+|.+.|++
T Consensus        94 ~~----~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~  168 (393)
T 3kgw_A           94 LL----EPGDSFLTGTNGIWGMR-AAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPLD  168 (393)
T ss_dssp             HC----CTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCT
T ss_pred             cC----CCCCEEEEEeCCchhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccHH
Confidence            87    89999999877765331 1233455699999999988888999999999988 899999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc------------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN------------  283 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~------------  283 (457)
                      +|.++|++||+++|+|++|+.|..+++...+++|++++|+|| ++|+.|+|+++++++..+++.+...            
T Consensus       169 ~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (393)
T 3kgw_A          169 GFGELCHRYQCLLLVDSVASLGGVPIYMDQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTDITYL  248 (393)
T ss_dssp             THHHHHHHTTCEEEEECTTTTTTSCCCTTTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHHHH
T ss_pred             HHHHHHHHcCCEEEEECCccccCcccchhhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeecHHHH
Confidence            999999999999999999999988888777889999999999 6678889999999876655543221            


Q ss_pred             ----CCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC-CCcccceEEEE
Q 040741          284 ----GGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM-ERRYIGNLNLS  357 (457)
Q Consensus       284 ----~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~  357 (457)
                          ++....++..++++...+.++.++++...+ ++++..++.+++++++.+.|++ + ++.+..+. ....+.++.+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~  326 (393)
T 3kgw_A          249 AKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQE-M-GLKFFVKDPEIRLPTITTVT  326 (393)
T ss_dssp             HHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSSSGGGBCSSEEEEE
T ss_pred             HHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-c-CCeeccCChhhcCCeEEEEe
Confidence                111223456678899999998888887765 4899999999999999999999 5 77765432 22334555566


Q ss_pred             Ec-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741          358 FA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       358 ~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ++ +.+..++...|  + ||.+.+|..+.                   .++++||++ +..++++|+++++++|++++++
T Consensus       327 ~~~~~~~~~~~~~l~~~~gi~v~~g~~~~-------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~  387 (393)
T 3kgw_A          327 VPAGYNWRDIVSYVLDHFSIEISGGLGPT-------------------EERVLRIGLLGYNATTENVDRVAEALREALQH  387 (393)
T ss_dssp             CCTTBCHHHHHHHHHHHHCEECBCCCGGG-------------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHhCCEEEeCCcccC-------------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHh
Confidence            64 45566777766  4 89998875432                   237999998 6556899999999999999987


Q ss_pred             HH
Q 040741          433 LR  434 (457)
Q Consensus       433 ~~  434 (457)
                      ++
T Consensus       388 ~~  389 (393)
T 3kgw_A          388 CP  389 (393)
T ss_dssp             SC
T ss_pred             hh
Confidence            64

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=100.00  E-value=1.3e-34  Score=284.19  Aligned_cols=338  Identities=12%  Similarity=0.104  Sum_probs=254.6

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-c-EEEeCChHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-E-IIFTSGATESN  131 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~-i~~t~g~T~a~  131 (457)
                      ..+|++++++.++|+++++++.+.+....+++.+   ..+ ++....+..+++++.+++++|++++ + +++|+|||+|+
T Consensus         3 ~~~~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~   81 (362)
T 2c0r_A            3 ERAYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSH-RGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQF   81 (362)
T ss_dssp             CCCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHH
T ss_pred             cceeeccCCCCCCCHHHHHHHHHHHhhhhhcCccccccCC-CcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHH
Confidence            3589999999999999999999988654322221   122 2344557888999999999999764 6 57889999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CC-CCCHHHHHHhcCCCceEEEEecccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DG-IVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~-~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      ++++.++.    ++||+|++..+.|.+.. ....++..| ++++++.+.   .+ .+|+++++  ++++|++|++++++|
T Consensus        82 ~~~~~~l~----~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~~t~~v~~~~~~n  153 (362)
T 2c0r_A           82 AMIPMNFL----KEGQTANYVMTGSWASK-ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQDNAAYLHLTSNET  153 (362)
T ss_dssp             HHHHHHHC----CTTCEEEEEECSHHHHH-HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCTTEEEEEEESEET
T ss_pred             HHHHHhcC----CCCCeEEEEecCcHhHH-HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCCCcCEEEEeCCcC
Confidence            99999998    89999988766554431 123334449 999998762   22 35776654  788999999999999


Q ss_pred             ccccc-cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccC--
Q 040741          208 EIGVI-QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLING--  284 (457)
Q Consensus       208 ~~G~~-~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~--  284 (457)
                      ++|.+ .|+++|      +|+++++|++|+.|..++++.+  .|++++|+||++|+.|+|+++++++.++++.+....  
T Consensus       154 ~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~--~d~~~~s~~K~~g~~G~G~l~~~~~~~~~l~~~~~~~~  225 (362)
T 2c0r_A          154 IEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ--FGLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTML  225 (362)
T ss_dssp             TTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG--CSEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred             ccceeccccccc------CCCEEEEEChhhccCCccchhH--CcEEEEeccccccCcCcEEEEEcHHHHhhccccCchHH
Confidence            99996 678776      8999999999999988877654  499999999998999999999999877766542110  


Q ss_pred             -C--ccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEE
Q 040741          285 -G--GQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       285 -~--~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~  358 (457)
                       +  .+..+...++++...+.++.++++...+  +++++.++.+++++++.+.|++ ++++ .+..++......++.+.+
T Consensus       226 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~  304 (362)
T 2c0r_A          226 RYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQ-SGGFYRGCVDVDSRSDMNITFRL  304 (362)
T ss_dssp             CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-STTSSEESSCGGGBCSSEEEEEC
T ss_pred             hHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH-cCCccccCCChHHcCCcEEEEEc
Confidence             0  0112234578999999999999998766  5899999999999999999998 6545 765433223345555555


Q ss_pred             cc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          359 AY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       359 ~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +. .+..++...|  +||.+.+|..+                     .+.|||+++.++++||+++++++|+++++++
T Consensus       305 ~~~~~~~~~~~~L~~~gi~~~~g~~~---------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~~  361 (362)
T 2c0r_A          305 ASEELEKEFVKASEQEGFVGLKGHRS---------------------VGGLRASIYNAVPYESCEALVQFMEHFKRSR  361 (362)
T ss_dssp             SCHHHHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHCCCeeccCCCC---------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            42 3456676666  68877665422                     1579999999999999999999999987654

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=100.00  E-value=6.7e-35  Score=285.98  Aligned_cols=333  Identities=16%  Similarity=0.186  Sum_probs=256.7

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHH-HHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESE-VAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~  136 (457)
                      +..+.++..+++++.+++.+.+    +      +.++ ... +...++++++++++|.+  ++++++|+|||+|++++++
T Consensus         6 ~~~~~gp~~~~~~v~~a~~~~~----~------~~~~-~~~~~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~   74 (366)
T 1m32_A            6 LLLTPGPLTTSRTVKEAMLFDS----C------TWDD-DYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLG   74 (366)
T ss_dssp             EECSSSSCCCCHHHHHTTCCCC----C------TTSH-HHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHH
T ss_pred             ccccCCCcCCCHHHHHHHhhhh----c------CCCH-HHHHHHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHH
Confidence            3444456678899999987742    1      1111 222 57789999999999942  1369999999999999999


Q ss_pred             HhhhhhcCCCCEEEEc-CCCCcch-HHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--CceEEEEeccccccccc
Q 040741          137 GVMHFYKDKKRHVITT-QTEHKCV-LDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~-~~~h~~~-~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--~t~li~i~~~~~~~G~~  212 (457)
                      ++.    ++|++|++. .++|++. ...+..   .|++++.++.+.++.+|++++++++++  ++++|++++++||+|.+
T Consensus        75 ~~~----~~gd~vi~~~~~~~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~  147 (366)
T 1m32_A           75 SAL----GPQDKVLIVSNGAYGARMVEMAGL---MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGML  147 (366)
T ss_dssp             HSC----CTTCCEEEEESSHHHHHHHHHHHH---HTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEE
T ss_pred             Hhc----CCCCeEEEEeCCCccHHHHHHHHH---hCCceEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCccee
Confidence            987    788887655 4677653 333333   499999999988888999999999975  57899999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc----
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ----  287 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~----  287 (457)
                      .|+++|.++|++||+++|+|++|+.+..++++..+++|++++|+|| ++|+.|+|+++++++..+++.+...+...    
T Consensus       148 ~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~  227 (366)
T 1m32_A          148 NPIDEVGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYA  227 (366)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHH
T ss_pred             cCHHHHHHHHHHcCCEEEEECCccccCcCccccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCccccHHH
Confidence            9999999999999999999999999888777766779999999999 56888899999998766665442211100    


Q ss_pred             -------ccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          288 -------ERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       288 -------~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                             ..+.+.++++...+.++.++++...+.  +++..++.+++++++.+.|++ + ++.+..++....+.++.+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~~~~~~~~~~~~~  305 (366)
T 1m32_A          228 QWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA-L-GFNTLLDDELHSPIITAFYS  305 (366)
T ss_dssp             HHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCGGGBCSSEEEEEC
T ss_pred             HHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHH-C-CCeeccCchhcCceEEEEEc
Confidence                   001223578888888888899887664  788999999999999999998 6 77665532223344666776


Q ss_pred             c---cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          359 A---YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       359 ~---~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +   +.+..++...|  +||.+.+|..|.                    .+++||+++..++++|+++++++|++++++
T Consensus       306 ~~~~~~~~~~~~~~l~~~gi~v~~~~~~~--------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~  364 (366)
T 1m32_A          306 PEDPQYRFSEFYRRLKEQGFVIYPGKVSQ--------------------SDCFRIGNIGEVYAADITALLTAIRTAMYW  364 (366)
T ss_dssp             CCCTTCCHHHHHHHHHHTTEECEECCCSS--------------------SCEEEEECCSSCCHHHHHHHHHHHHHHCTT
T ss_pred             CccCCCCHHHHHHHHHHCCEEEECCcCCC--------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            5   34566676666  699998876542                    279999999999999999999999988653

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=100.00  E-value=3.7e-34  Score=282.20  Aligned_cols=336  Identities=15%  Similarity=0.105  Sum_probs=261.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cE-EEeCChHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EI-IFTSGATESNNVSIK  136 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i-~~t~g~T~a~~~al~  136 (457)
                      .++-+.++.++++++++++.+.+..         + +.....+...++++++++++|++++ ++ ++++|||+|++++++
T Consensus        20 ~~~~~pgp~~~~~~v~~a~~~~~~~---------~-~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~   89 (376)
T 3f0h_A           20 MLNFTVGPVMSSEEVRAIGAEQVPY---------F-RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVM   89 (376)
T ss_dssp             CEECSSSSCCCCHHHHHHHTSCCCC---------C-SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHH
T ss_pred             ceeecCCCCCCcHHHHHHhcCCCCC---------C-CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHH
Confidence            4666778889999999998776531         1 1223447888999999999999753 44 458999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~  216 (457)
                      ++.    ++||+|++..+.|.+.. ....+...|.+++.++.+.++.+|++++++++++++++|++++++||+|.+.|++
T Consensus        90 ~~~----~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~v~~~~~~nptG~~~~l~  164 (376)
T 3f0h_A           90 NCF----TKKDKVLVIDGGSFGHR-FVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDNQNFTGLLVNVDETSTAVLYDTM  164 (376)
T ss_dssp             HHC----CTTCCEEEEESSHHHHH-HHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTTSCCCEEEEESEETTTTEECCHH
T ss_pred             hcc----CCCCeEEEEeCChhhHH-HHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhccCceEEEEecccCCcceecCHH
Confidence            987    89999999887666533 2344566699999999988888999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCc---------
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGG---------  286 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~---------  286 (457)
                      +|.++|++||+++|+|++++.+..++++..+++|++++|+||.+| +.|+|+++++++..+++.+....+.         
T Consensus       165 ~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (376)
T 3f0h_A          165 MIGEFCKKNNMFFVCDCVSAFLADPFNMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYFDLKDALK  244 (376)
T ss_dssp             HHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTTCHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEcCccccCccccccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceeecHHHHHh
Confidence            999999999999999999999988877766778999999999666 8899999999876655543221110         


Q ss_pred             -cccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          287 -QERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       287 -~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                       ...+....+++...++++.++++.+.+.  ++++.++.+++++++.+.|++ + ++.+..+.  ....++.+...+.+.
T Consensus       245 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~~~~~~  320 (376)
T 3f0h_A          245 NQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKD-L-PFELVSES--PANGVTSVHPTTANA  320 (376)
T ss_dssp             HHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTT-S-SEEECCSS--BBTTEEEEEESSSCH
T ss_pred             hcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-c-CCccCccc--cCceEEEEeCCCCCH
Confidence             0011223466666778888888877663  889999999999999999998 5 57666432  234444444455566


Q ss_pred             hHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       364 ~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .++...|  + ||.+.+|..                   ....+++||+++..++++|+++++++|++++++
T Consensus       321 ~~l~~~l~~~~gi~v~~g~~-------------------~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~  373 (376)
T 3f0h_A          321 YDIFLKLKDEYGIWICPNGG-------------------EMKDTIFRVGHIGALTHEDNTTLVNAFKDLQKR  373 (376)
T ss_dssp             HHHHHHHHHHSSEECEECCG-------------------GGTTTCEEEECCSSCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCEEEecCcc-------------------ccCCCEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            7777776  5 898887631                   122379999999999999999999999998763

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=3.5e-33  Score=276.69  Aligned_cols=332  Identities=18%  Similarity=0.147  Sum_probs=254.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      .||++. ++++++++.+++.+.+...++++..     .....+...++++++++++|++++++++|+|||+|+.++++++
T Consensus        33 ~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~  106 (397)
T 3f9t_A           33 NIFGSM-CSNVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCI  106 (397)
T ss_dssp             CBCSCS-CCCCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHH
T ss_pred             CeEEEe-cCCCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHH
Confidence            577775 4567788999999988765544331     1244578889999999999999889999999999999999998


Q ss_pred             hhh---------hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccc
Q 040741          139 MHF---------YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNE  208 (457)
Q Consensus       139 ~~~---------~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~  208 (457)
                      ...         ...+|++|+++.++|+++..+++..   |.+++.++.+.++.+|++++++++++ ++++|++++++||
T Consensus       107 ~~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~np  183 (397)
T 3f9t_A          107 KNIWREKRRKGLSKNEHPKIIVPITAHFSFEKGREMM---DLEYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTE  183 (397)
T ss_dssp             HHHHHHHHHTTCCCCSSCEEEEETTCCTHHHHHHHHH---TCEEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTT
T ss_pred             HHHHHhhhhhcccCCCCeEEEECCcchhHHHHHHHHc---CceeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCC
Confidence            842         1124999999999999999888877   99999999998899999999999998 8999999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCC--------------cccCCCCcccEEEecccccc-CCCCceEEEEecC
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKI--------------PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRR  273 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~--------------~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~  273 (457)
                      +|.+.|+++|.++|++||+++|+|++|+.+..              ++++.. ++|++++|+||++ ++.++|+++++++
T Consensus       184 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~  262 (397)
T 3f9t_A          184 LGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDI  262 (397)
T ss_dssp             TCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSG
T ss_pred             CCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCH
Confidence            99999999999999999999999999986543              334444 7899999999965 5667999999876


Q ss_pred             CCc-cc---cccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC
Q 040741          274 PRI-RV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER  348 (457)
Q Consensus       274 ~~~-~~---~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  348 (457)
                      ... .+   .+...++.+  ....++.+.....++.+++..+.. ++++..++.+++++++.+.|++ + ++.+..++  
T Consensus       263 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--  336 (397)
T 3f9t_A          263 GYKRYLDVDAPYLTETRQ--ATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKE-N-NFKPVIEP--  336 (397)
T ss_dssp             GGGGGTCEECTTSSSSEE--CSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCBSSCC--
T ss_pred             HHHHhhccCCccccCCCc--cccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEEcCC--
Confidence            432 22   222222111  111234444455555556665543 5788899999999999999999 6 77655542  


Q ss_pred             cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          349 RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                       ..+++.+.++  +..++...|  +||.+.++..                      .+++||+++..++++|+++++++|
T Consensus       337 -~~~~~~~~~~--~~~~~~~~l~~~gi~v~~~~~----------------------~~~~Ri~~~~~~~~e~i~~~~~~l  391 (397)
T 3f9t_A          337 -ILNIVAIEDE--DYKEVCKKLRDRGIYVSVCNC----------------------VKALRIVVMPHIKREHIDNFIEIL  391 (397)
T ss_dssp             -SSSEEEEECT--THHHHHHHHHHTTCBCEECSS----------------------SSEEEEECCTTCCHHHHHHHHHHH
T ss_pred             -CccEEEEEeC--CHHHHHHHHHhCCeEEeccCC----------------------CCEEEEEEcCCCCHHHHHHHHHHH
Confidence             2444444443  355666666  5888776531                      279999999989999999999999


Q ss_pred             HHHHH
Q 040741          427 VKQVE  431 (457)
Q Consensus       427 ~~~~~  431 (457)
                      +++++
T Consensus       392 ~~~l~  396 (397)
T 3f9t_A          392 NSIKR  396 (397)
T ss_dssp             HHHC-
T ss_pred             HHhhC
Confidence            98764

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=100.00  E-value=6.9e-34  Score=278.60  Aligned_cols=337  Identities=13%  Similarity=0.117  Sum_probs=255.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccch---hhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh-HHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLF---GWESEVAVETARSQIADLIGAS-PKEIIFTSGA-TESNNV  133 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~-T~a~~~  133 (457)
                      +|+++.++.++|+++++++.+.+... .+++...+.+   .....+..+++++++++++|++ ++++++++|+ |+|+.+
T Consensus         4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~   82 (360)
T 1w23_A            4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTM   82 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHHHH
Confidence            68888888899999999999988653 4555433322   4455678899999999999996 4589999998 999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHH-hcCCCceEEEEecccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRA-AIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~-~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++.++... .+++++|+++.++|.+..    .++..| +++.++.+. ++.+|++++++ ++++++++|++++++||+|.
T Consensus        83 ~~~~l~~~-~~~g~~vi~~~~~~~~~~----~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~~~~k~v~~~~~~nptG~  156 (360)
T 1w23_A           83 LPMNLLTK-GTIGNYVLTGSWSEKALK----EAKLLG-ETHIAASTKANSYQSIPDFSEFQLNENDAYLHITSNNTIYGT  156 (360)
T ss_dssp             HHHHHCCT-TCEEEEEECSHHHHHHHH----HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCCTTEEEEEEESEETTTTE
T ss_pred             HHHHhcCC-CCcccEEEecchhHHHHH----HHHHhC-CeEEeecccccCcCCccchHhhccCCCCCEEEEeCCCCCcce
Confidence            99988721 023667888777776532    234459 999999874 66789999999 99999999999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccc---
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQE---  288 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~---  288 (457)
                      +.|     +++++||+++|+|++|+.+..++++..+  |++++|+||.+|+.|+|+++++++.++++.+.. ++...   
T Consensus       157 ~~~-----~i~~~~~~~li~D~a~~~~~~~~~~~~~--di~~~s~sK~~~~~G~G~~~~~~~~~~~~~~~~-~~~~~~~~  228 (360)
T 1w23_A          157 QYQ-----NFPEINHAPLIADMSSDILSRPLKVNQF--GMIYAGAQKNLGPSGVTVVIVKKDLLNTKVEQV-PTMLQYAT  228 (360)
T ss_dssp             ECS-----SCCCCCSSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTSCTTCEEEEEEHHHHCSCCTTC-CGGGCHHH
T ss_pred             ecc-----cccccCCceEEEechhhcCCCCcCcccC--CEEEEEcccccCCCCcEEEEEcHHHHhhcccCC-cchhhhhh
Confidence            987     3444899999999999998877666543  899999999889889999999987766665543 11110   


Q ss_pred             ---cccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCCCCcccceEEEEEccc-
Q 040741          289 ---RGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSMERRYIGNLNLSFAYV-  361 (457)
Q Consensus       289 ---~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-  361 (457)
                         .+...++++...+.++..+++.+.+  +++++.++.+++++++.+.|++ ++++ ....++....+.++.+.++.. 
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (360)
T 1w23_A          229 HIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDE-SNGFYVGHAEKGSRSLMNVTFNLRNEE  307 (360)
T ss_dssp             HHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT-TTTSSEESSCGGGBCSSEEEEECSSHH
T ss_pred             hhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH-ccCcccccCCchhccCcEEEEEcCCCc
Confidence               2344578888888888888887765  4788999999999999999998 7754 443222222233556665432 


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +..++...|  +||.+.+|..+                     .++|||+++..++++++++++++|++++++
T Consensus       308 ~~~~~~~~l~~~gi~~~~~~~~---------------------~~~iRis~~~~~~~~~i~~~~~~l~~~~~~  359 (360)
T 1w23_A          308 LNQQFLAKAKEQGFVGLNGHRS---------------------VGGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHHHHHHTTEESCBCCTT---------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCeeeecCCCC---------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence            234555555  68887665311                     278999999999999999999999988653

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=100.00  E-value=1.7e-33  Score=278.15  Aligned_cols=340  Identities=15%  Similarity=0.153  Sum_probs=254.6

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC----CCcEEEeCChHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS----PKEIIFTSGATESNNVS  134 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~----~~~i~~t~g~T~a~~~a  134 (457)
                      .++..+++..+++++++++.+.....          +.........+++++++++++..    ++++++|+|||+|++++
T Consensus         6 ~~~~~p~p~~~~~~v~~a~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~   75 (385)
T 2bkw_A            6 DTLLIPGPIILSGAVQKALDVPSLGH----------TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIF   75 (385)
T ss_dssp             CEECSSSSCCCCHHHHHTTSCCCCCT----------TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHH
T ss_pred             ceeecCCCcCchHHHHHHHhcccccc----------CCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHH
Confidence            36777788889999999987654321          11222345677888888888763    56899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCC-CceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRP-DTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~  211 (457)
                      ++++... .++|++|++... .|....  ...++..|++++.++. +.++.+|+++|++++++ ++++|++++++||+|.
T Consensus        76 ~~~~~~~-~~~gd~vlv~~~~~~~~~~--~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~  152 (385)
T 2bkw_A           76 ASNFILS-KAPNKNVLVVSTGTFSDRF--ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAV  152 (385)
T ss_dssp             HHHHSCT-TCSCCEEEEECSSHHHHHH--HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTE
T ss_pred             HHHHhcc-CCCCCeEEEEcCCcchHHH--HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCCcCe
Confidence            9987511 147899877644 333332  1333455999999999 77888999999999986 7899999999999999


Q ss_pred             ccChHHHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCc-ccccc------
Q 040741          212 IQPMEEIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRI-RVEPL------  281 (457)
Q Consensus       212 ~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~-~~~~~------  281 (457)
                      +.|+++|.++|++|  |+++|+|++|+.|..++++..+++|++++|+|| ++|+.|+|+++++++.++ ++.+.      
T Consensus       153 ~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~~~~~~~~  232 (385)
T 2bkw_A          153 LSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVH  232 (385)
T ss_dssp             ECCHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCS
T ss_pred             EcCHHHHHHHHHhhCCCCEEEEECccccCCccccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhhccCCCCC
Confidence            99999999999999  999999999999888777777789999999999 677889999999886554 44210      


Q ss_pred             ccCC------------ccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-hhcCCCeEEeCCC-
Q 040741          282 INGG------------GQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGI-KEKLDGVVVNGSM-  346 (457)
Q Consensus       282 ~~~~------------~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~-  346 (457)
                      ..++            ....+.+.++++...+.++.++++.+.+. ++++.++.+++++++.+.| ++ + ++.+..+. 
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~-g~~~~~~~~  310 (385)
T 2bkw_A          233 GYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNG-L-QLTSVSRYP  310 (385)
T ss_dssp             CSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTT-T-CCEESSCSS
T ss_pred             ceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHh-c-CceecccCc
Confidence            0000            00011234688888888888899887654 8889999999999999999 88 6 78776422 


Q ss_pred             CC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cC---CCCCHHHH
Q 040741          347 ER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IG---RFTTEAEV  419 (457)
Q Consensus       347 ~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~---~~~t~edi  419 (457)
                      .. ....++.+.++.  ..++...|  +||.+.+|..+.                  ...+.+||+ ++   ..++++|+
T Consensus       311 ~~~~~~~~~~~~~~~--~~~~~~~l~~~gi~v~~g~~~~------------------~~~~~iRis~~~~~~~~~~~e~i  370 (385)
T 2bkw_A          311 SNMSAHGLTAVYVAD--PPDVIAFLKSHGVVIAGGIHKD------------------IGPKYIRIGHMGVTACNKNLPYM  370 (385)
T ss_dssp             STTBCSSCEEEECSC--HHHHHHHHHHTTEECBCCCCTT------------------TGGGEEEECCCGGGTSSTTCTHH
T ss_pred             ccccCCceEEEecCC--HHHHHHHHHHCCeEEeCCCCcc------------------cCCCEEEEEccccccccCCHHHH
Confidence            12 245666666653  55666666  689888775321                  123799999 65   24689999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      ++++++|+++++++
T Consensus       371 ~~~~~~l~~~~~~~  384 (385)
T 2bkw_A          371 KNCFDLIKLALQRK  384 (385)
T ss_dssp             HHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999887654

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=100.00  E-value=1.4e-32  Score=269.66  Aligned_cols=318  Identities=16%  Similarity=0.107  Sum_probs=250.7

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.|+|+.+.+. ++++++.+++.+.+.....+|           .....++++.+++++|++++++++|+|+|+|++++
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~  100 (363)
T 3ffh_A           32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEEELIFTAGVDELIELL  100 (363)
T ss_dssp             SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHH
Confidence            467888887665 678999999988764332222           23567899999999999888999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ++++.    ++|++|+++.+.|.++...++..   |.+++.++.+.++.+|++++++++++++++|++++++||+|.+.|
T Consensus       101 ~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~  173 (363)
T 3ffh_A          101 TRVLL----DTTTNTVMATPTFVQYRQNALIE---GAEVREIPLLQDGEHDLEGMLNAIDEKTTIVWICNPNNPTGNYIE  173 (363)
T ss_dssp             HHHHC----STTCEEEEEESSCHHHHHHHHHH---TCEEEEEECCTTSCCCHHHHHHHCCTTEEEEEEESSCTTTCCCCC
T ss_pred             HHHHc----cCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCCCCCcCHHHHHHhcccCCCEEEEeCCCCCcCCCcC
Confidence            99987    89999999999999988887766   999999999888899999999999999999999999999999999


Q ss_pred             hHHHHHHHHhc--CCcEEEehhhhcCCC---c--cc-CCCCcccEEEeccccccCCCCc--eEEEEecCCCccccccccC
Q 040741          215 MEEIGQICKEF--KIPFHTDAAQALGKI---P--VD-VEKWNVSLMSLSGHKIYGPKGV--GALYMRRRPRIRVEPLING  284 (457)
Q Consensus       215 l~~i~~l~~~~--~v~li~D~a~~~g~~---~--~~-~~~~~~Di~~~s~~K~~g~~G~--G~l~~~~~~~~~~~~~~~~  284 (457)
                      ++++.++++.+  |+++|+|++|+....   .  .. ....+.++++.|++|.+|++|.  |+++++++..+++..... 
T Consensus       174 ~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~-  252 (363)
T 3ffh_A          174 LADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGYGIADKEIIRQLNIVRP-  252 (363)
T ss_dssp             HHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEEEEECHHHHHHHHHTCC-
T ss_pred             HHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceeeeecCHHHHHHHHHhCC-
Confidence            99999998888  999999999984321   1  11 1122455888999998886664  999998766655544332 


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                              ..+++.....++..+++.. +.+++..++.+++++++.+.|++ ++++.+..+.    ..++.+.++. +..
T Consensus       253 --------~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~~-~~~  317 (363)
T 3ffh_A          253 --------PFNTTSIGQKLAIEAIKDQ-AFIGECRTSNANGIKQYEAFAKR-FEKVKLYPAN----GNFVLIDLGI-EAG  317 (363)
T ss_dssp             --------SCCCBHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHH-CTTCEECCCC----SSEEEEECSS-CHH
T ss_pred             --------CCCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHhh-CCCceECCCC----CeEEEEECCC-CHH
Confidence                    2356777777777777632 45788889999999999999998 7888876432    3445555553 566


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ++...|  +||.+.+|..+..                   .+++||+++   +++|+++++++|+++
T Consensus       318 ~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~---~~~~i~~~~~~l~~~  362 (363)
T 3ffh_A          318 TIFSYLEKNGYITRSGAALGF-------------------PTAVRITIG---KEEDNSAVIALLEKL  362 (363)
T ss_dssp             HHHHHHHHTTEECEETTTTTC-------------------TTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCeEEEeCccCCC-------------------CCeEEEECC---CHHHHHHHHHHHHHh
Confidence            676666  6999988865421                   279999987   799999999999875

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=100.00  E-value=1.1e-32  Score=270.65  Aligned_cols=317  Identities=14%  Similarity=0.075  Sum_probs=250.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.|+|+.+.+. ++++++.+++.+.+....++|..           ...++++.+++++|++++++++|+|+|+|++++
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~   98 (365)
T 3get_A           30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDD-----------SMIELKSTLAQKYKVQNENIIIGAGSDQVIEFA   98 (365)
T ss_dssp             SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCT-----------TCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHH
T ss_pred             CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------ChHHHHHHHHHHhCCCcceEEECCCHHHHHHHH
Confidence            567899877655 68899999999998755444332           124889999999999888999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      ++++.    ++|++|++..+.|.++...++..   |.+++.++. +.++ +|++++++++++++++|++++++||+|.+.
T Consensus        99 ~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~-~d~~~l~~~l~~~~~~v~~~~p~nptG~~~  170 (365)
T 3get_A           99 IHSKL----NSKNAFLQAGVTFAMYEIYAKQC---GAKCYKTQSITHNL-DEFKKLYETHKDEIKLIFLCLPNNPLGECL  170 (365)
T ss_dssp             HHHHC----CTTCEEEECSSCCTHHHHHHHHH---TCEEEECSSSSCCH-HHHHHHHHHTTTTEEEEEEESSCTTTCCCC
T ss_pred             HHHHh----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEEecCCCCC-CCHHHHHHHhCCCCCEEEEcCCCCCCCCCc
Confidence            99987    89999999999999998887776   999999998 5677 999999999999999999999999999999


Q ss_pred             ChHHHHHHHH--hcCCcEEEehhhhcCC------CcccC----CCCcccEEEeccccccCCCC--ceEEEEecCCCcccc
Q 040741          214 PMEEIGQICK--EFKIPFHTDAAQALGK------IPVDV----EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVE  279 (457)
Q Consensus       214 ~l~~i~~l~~--~~~v~li~D~a~~~g~------~~~~~----~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~  279 (457)
                      |++++.++++  ++|+++|+|++|+.+.      .+.+.    ...+.++++.|++|.+|.+|  +|+++++++..+++.
T Consensus       171 ~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~  250 (365)
T 3get_A          171 DASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGLRIGYGIANANIISAFY  250 (365)
T ss_dssp             CHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTTCCEEEEECHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcchheEEEEcCHHHHHHHH
Confidence            9988888888  6799999999998322      22221    12356789999999877554  899999776655554


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      .....         .+++.....++..+++.. +.+++..++++++++++.+.|++ + ++.+..+.    ..++.+.++
T Consensus       251 ~~~~~---------~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~~~----~~~~~~~~~  314 (365)
T 3get_A          251 KLRAP---------FNVSNLALKAAVAAMDDD-EFTEKTLENNFSQMELYKEFAKK-H-NIKIIDSY----TNFITYFFD  314 (365)
T ss_dssp             HHSCT---------TCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCCS----SSEEEEECS
T ss_pred             HhcCC---------CCcCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHh-C-CCEECCCC----CeEEEEECC
Confidence            43321         246777777777777642 45788899999999999999999 5 77765432    344555665


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ..+..++...|  +||.+.+|..|.                    .+++||+++   +++|+++++++|++++
T Consensus       315 ~~~~~~~~~~l~~~gi~v~~g~~~~--------------------~~~iRis~~---~~~~i~~l~~~l~~~l  364 (365)
T 3get_A          315 EKNSTDLSEKLLKKGIIIRNLKSYG--------------------LNAIRITIG---TSYENEKFFTEFDKIL  364 (365)
T ss_dssp             SSCHHHHHHHHHTTTEECEECGGGT--------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCEEEEECccCC--------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence            43566676666  699999887542                    289999987   7999999999998875

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=100.00  E-value=1.7e-31  Score=270.00  Aligned_cols=348  Identities=15%  Similarity=0.022  Sum_probs=255.6

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc-----EEEeCChHHHHHHHHHHhhhh
Q 040741           67 TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE-----IIFTSGATESNNVSIKGVMHF  141 (457)
Q Consensus        67 ~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-----i~~t~g~T~a~~~al~~~~~~  141 (457)
                      ++.++.+.+++.+.+.....++..     .....+...++++++++++|+++++     +++|+|||+|+.+++.++...
T Consensus        52 ~~~~~~v~e~~~~a~~~~~~~~~~-----~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~  126 (452)
T 2dgk_A           52 TWDDENVHKLMDLSINKNWIDKEE-----YPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWR  126 (452)
T ss_dssp             CCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccCCCChhh-----ChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHH
Confidence            466788999888887543333221     2345567788999999999998765     999999999999999887632


Q ss_pred             hc----CCC-----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          142 YK----DKK-----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       142 ~~----~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      +.    .+|     ++|+++. .|.++..+++.+   |++++.++++. ++.+|+++|+++|+++|++|++++++|++|.
T Consensus       127 ~~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~---G~~v~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~~~n~tG~  202 (452)
T 2dgk_A          127 WRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGN  202 (452)
T ss_dssp             HHHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBBSCTTTCB
T ss_pred             HHHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHc---CceEEEEecCCCCCeECHHHHHHHHhhCCEEEEEEcCCcCCcc
Confidence            11    133     6899999 999999888776   99999999886 7899999999999999999999999999999


Q ss_pred             ccChHHHHHHHHhc------CCcEEEehhhhcCCC-------cccCCCCcccEEEeccccc-cCCCCceEEEEecC-CC-
Q 040741          212 IQPMEEIGQICKEF------KIPFHTDAAQALGKI-------PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRR-PR-  275 (457)
Q Consensus       212 ~~~l~~i~~l~~~~------~v~li~D~a~~~g~~-------~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~-~~-  275 (457)
                      +.|+++|.++|+++      |+++|+|+||+.+..       +.++...++|++++++||+ ++|.|+|+++++++ .+ 
T Consensus       203 ~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~~  282 (452)
T 2dgk_A          203 YEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALP  282 (452)
T ss_dssp             BCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSC
T ss_pred             cCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcCHHHHH
Confidence            99999999999996      999999999987643       2233334799999999994 57888999999764 22 


Q ss_pred             cccc--ccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC-Cccc
Q 040741          276 IRVE--PLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME-RRYI  351 (457)
Q Consensus       276 ~~~~--~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~~~~  351 (457)
                      ..+.  +...++........++.+.....++.+++..+ .++++++.++..++++++.+.|.+ ++++.++.+.. ....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~~~~~~~~  361 (452)
T 2dgk_A          283 QELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICTGRPDEGI  361 (452)
T ss_dssp             GGGCEEECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEECCTTTBS
T ss_pred             HHhccCccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEecCCCCCCCe
Confidence            2221  22222211010012344443445555555543 346889999999999999999999 88898875321 1235


Q ss_pred             ceEEEEEccc-----cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          352 GNLNLSFAYV-----EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       352 ~~~~~~~~~~-----~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      +++.|.++..     +..++...|  +|+.+...  +.+..              ......+||+++..+|++|+|++++
T Consensus       362 ~~v~f~~~~~~~~~~~~~~l~~~L~~~Gi~v~~~--~~~~~--------------~~~~~~lRis~~~~~t~e~id~li~  425 (452)
T 2dgk_A          362 PAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAF--TLGGE--------------ATDIVVMRIMCRRGFEMDFAELLLE  425 (452)
T ss_dssp             SEEEEEECTTCCCSCCHHHHHHHHHHTTCBCCEE--ECSTT--------------CTTCEEEEEECCTTCCHHHHHHHHH
T ss_pred             EEEEEEecCcccccCCHHHHHHHHHhcCCeeeee--eCCcc--------------cCCeEEEEEEecCCCCHHHHHHHHH
Confidence            6677777642     235677766  57655431  11110              0123699999999999999999999


Q ss_pred             HHHHHHHHHHhcChhH
Q 040741          425 LTVKQVEKLREMSPLY  440 (457)
Q Consensus       425 ~l~~~~~~~~~~~~~~  440 (457)
                      .|+++++++++..+.+
T Consensus       426 ~l~~~~~~~~~~~~~~  441 (452)
T 2dgk_A          426 DYKASLKYLSDHPKLQ  441 (452)
T ss_dssp             HHHHHHHHHHHCGGGT
T ss_pred             HHHHHHHHHHhCCCCC
Confidence            9999999998877766

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=100.00  E-value=2.2e-31  Score=272.12  Aligned_cols=350  Identities=14%  Similarity=0.058  Sum_probs=259.8

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCc---EEEeCChHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKE---IIFTSGATESNNVS  134 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~---i~~t~g~T~a~~~a  134 (457)
                      ++....++++++.+.+++.+.+...+.++..     .....+...++++++++++|++  +++   .++|+|||+|+.++
T Consensus        59 ~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~-----~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a  133 (502)
T 3hbx_A           59 NLASFVTTWMEPECDKLIMSSINKNYVDMDE-----YPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLA  133 (502)
T ss_dssp             BTTCCSCCCCCHHHHHHHHHTTTCBTTCTTT-----CHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHH
T ss_pred             eeccccCCCCCHHHHHHHHHHhccCCCChhc-----ChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHH
Confidence            4444445788999999999988765544332     2234567778999999999997  443   45799999999999


Q ss_pred             HHHhhhhhc----CCCC-----EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEec
Q 040741          135 IKGVMHFYK----DKKR-----HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       135 l~~~~~~~~----~~g~-----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      +.++...+.    .+|+     +|+++...|.++..+++.+   |++++.++++.+ +.+|+++|+++|+++|++|++++
T Consensus       134 ~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~t~~v~~~~  210 (502)
T 3hbx_A          134 GLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYF---EVELKEVKLSEGYYVMDPQQAVDMVDENTICVAAIL  210 (502)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHT---TCEEEEECCBTTBCSCCHHHHHHHCCTTEEEEEEEB
T ss_pred             HHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHc---CceeEEEecCCCcCcCCHHHHHHHHhhCCEEEEEec
Confidence            988764211    1254     8999999999999988877   999999998865 89999999999999999999999


Q ss_pred             cccccccccChHHHHHHHHhc------CCcEEEehhhhcCC-------CcccCCCCcccEEEeccccc-cCCCCceEEEE
Q 040741          205 VNNEIGVIQPMEEIGQICKEF------KIPFHTDAAQALGK-------IPVDVEKWNVSLMSLSGHKI-YGPKGVGALYM  270 (457)
Q Consensus       205 ~~~~~G~~~~l~~i~~l~~~~------~v~li~D~a~~~g~-------~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~  270 (457)
                      ++|++|.+.|+++|.++|+++      |+++|+|+||+.+.       .+.++...++|++++|+||+ ++|.|+|++++
T Consensus       211 ~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~  290 (502)
T 3hbx_A          211 GSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIW  290 (502)
T ss_dssp             SCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred             CCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEE
Confidence            999999999999999999999      99999999998443       23344445799999999995 47889999998


Q ss_pred             ecC-CCccc---cccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          271 RRR-PRIRV---EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       271 ~~~-~~~~~---~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      +++ .+...   .+...++........++.+...+.++..++..+. +++.++.++..++++++.+.|.+ ++++.++.+
T Consensus       291 ~~~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~-~~~~~~~~~  369 (502)
T 3hbx_A          291 RNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEK-TERFNIVSK  369 (502)
T ss_dssp             SSGGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEEECSC
T ss_pred             eCHHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCEEEEeC
Confidence            764 22221   1122222221111123444445666666666553 46889999999999999999999 888998764


Q ss_pred             CCCcccceEEEEEcc---ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          346 MERRYIGNLNLSFAY---VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       346 ~~~~~~~~~~~~~~~---~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      .  ...+++.|.++.   .+..++...|  +|+.+.....  +              ........+||+++..+++||+|
T Consensus       370 ~--~~~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~--p--------------~~~~~~~~lRisv~~~~t~edid  431 (502)
T 3hbx_A          370 D--EGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTM--P--------------PNAQHITVLRVVIREDFSRTLAE  431 (502)
T ss_dssp             S--SSSSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEEC--C--------------TTCTTCEEEEEECCTTCCHHHHH
T ss_pred             C--CCceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccC--C--------------cccCCceEEEEEeCCCCCHHHHH
Confidence            1  125667777754   2334677777  5776643211  1              00112368999999999999999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 040741          421 RAIELTVKQVEKLREM  436 (457)
Q Consensus       421 ~~~~~l~~~~~~~~~~  436 (457)
                      .+++.|+++++++++.
T Consensus       432 ~li~~L~~~l~~l~~~  447 (502)
T 3hbx_A          432 RLVIDIEKVMRELDEL  447 (502)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999999988764

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=100.00  E-value=2.2e-32  Score=267.30  Aligned_cols=320  Identities=13%  Similarity=0.119  Sum_probs=250.4

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ..+.++|+.+.+. ++++++.+++.+.+.....+|           .....++++++++++|++++++++|+|+|+|+++
T Consensus        15 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~   83 (354)
T 3ly1_A           15 TDNPIRINFNENPLGMSPKAQAAARDAVVKANRYA-----------KNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRA   83 (354)
T ss_dssp             SSSCEECSSCCCSSCCCHHHHHHHHHTGGGTTSCC-----------HHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHH
T ss_pred             CCceEEccCCCCCCCCCHHHHHHHHHHHhhCcCCC-----------CCchHHHHHHHHHHhCCChHHEEEeCChHHHHHH
Confidence            4567888877665 688999999999886432221           2467899999999999988899999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEecccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMAVNNEIGV  211 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~~~~~~G~  211 (457)
                      +++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++.+|+++++++++  +++++|++++++||+|.
T Consensus        84 ~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~  156 (354)
T 3ly1_A           84 AIEAYA----SLEAQLVIPELTYGDGEHFAKIA---GMKVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGT  156 (354)
T ss_dssp             HHHHHC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCC
T ss_pred             HHHHHh----CCCCeEEECCCCchHHHHHHHHc---CCEEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCC
Confidence            999987    89999999999999988777655   9999999998788999999999998  78999999999999999


Q ss_pred             ccChHHHHHHHHh--cCCcEEEehhhhcCCCcc---c----CCCC-cccEEEeccccccCCCC--ceEEEEecCCCcccc
Q 040741          212 IQPMEEIGQICKE--FKIPFHTDAAQALGKIPV---D----VEKW-NVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVE  279 (457)
Q Consensus       212 ~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~---~----~~~~-~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~  279 (457)
                      +.|.+++.++++.  +|+++|+|++|+.....-   .    .... +.++++.|++|.+|.+|  +|+++++++..+++.
T Consensus       157 ~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~  236 (354)
T 3ly1_A          157 ITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGMRVGYAVAHPTVIALMG  236 (354)
T ss_dssp             CCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGGCCEEEECCHHHHHHHG
T ss_pred             CcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhhhheeeecCHHHHHHHH
Confidence            9998888888777  999999999998543221   1    1122 45689999999887444  899999876655554


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      .....         ++++.....++.++++.. +.+++..++++++++++.+.|++ + ++.+..+    .+.++.+.++
T Consensus       237 ~~~~~---------~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~l~~-~-~~~~~~~----~~~~~~~~~~  300 (354)
T 3ly1_A          237 RYVAG---------EKINFSGVDAALASMNDS-AFITYSKKSNDVSRQILLKALED-L-KLPYLPS----EGNFVFHQLV  300 (354)
T ss_dssp             GGTTC---------SCCCHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC----CSSEEEEECS
T ss_pred             HhcCC---------CCCCHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHHHHH-C-CCeECCC----CceEEEEECC
Confidence            43321         367777777777776643 45788889999999999999998 4 6555432    1344555555


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      . +..++...|  +||.+. |.+|.                   ..+++||+++   +++|+++++++|++++++
T Consensus       301 ~-~~~~~~~~l~~~gi~v~-g~~~~-------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~  351 (354)
T 3ly1_A          301 V-PLKDYQTHMADAGVLIG-RAFPP-------------------ADNWCRISLG---TPQEMQWVADTMREFRKK  351 (354)
T ss_dssp             S-CHHHHHHHHHHTTEECC-CCCTT-------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred             C-CHHHHHHHHHHCCEEEe-ecCCC-------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHh
Confidence            3 556666666  689887 65432                   1389999987   689999999999998763

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=100.00  E-value=1.9e-32  Score=269.24  Aligned_cols=320  Identities=15%  Similarity=0.133  Sum_probs=251.0

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC-CCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~-~~~~i~~t~g~T~a~  131 (457)
                      .+.|+|+.+.+. ++++++.+++.+.+...  .+++.           ....++++++++++|+ +++++++|+|+|+|+
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----------~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~   98 (367)
T 3euc_A           30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----------PSSEALRAKLKEVMQVPAGMEVLLGNGSDEII   98 (367)
T ss_dssp             TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----------CCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred             CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----------CcHHHHHHHHHHHhCCCCcceEEEcCCHHHHH
Confidence            467888877665 67899999999988742  22211           1357899999999999 777899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G  210 (457)
                      +++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++.+|++++++++++ ++++|++++++||+|
T Consensus        99 ~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG  171 (367)
T 3euc_A           99 SMLALAAA----RPGAKVMAPVPGFVMYAMSAQFA---GLEFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTG  171 (367)
T ss_dssp             HHHHHHTC----CTTCEEEEEESCSCCSCHHHHTT---TCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTC
T ss_pred             HHHHHHHc----CCCCEEEEcCCCHHHHHHHHHHc---CCeEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCC
Confidence            99999987    89999999999999988776655   99999999998888999999999988 899999999999999


Q ss_pred             cccC---hHHHHHHHHhc--CCcEEEehhhhcCCC---cccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccc
Q 040741          211 VIQP---MEEIGQICKEF--KIPFHTDAAQALGKI---PVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEP  280 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~--~v~li~D~a~~~g~~---~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~  280 (457)
                      .+.|   +++|+++|++|  |+++|+|++|+....   .......+.++++.|++|. +.+|  +|+++++++..+++..
T Consensus       172 ~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r~G~~~~~~~~~~~~~~  250 (367)
T 3euc_A          172 NLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIRLGYVAGDPQWLEQLDK  250 (367)
T ss_dssp             CCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCCEEEEEECHHHHHHHGG
T ss_pred             CCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccCceeeeeCHHHHHHHHH
Confidence            9976   67788889999  999999999974221   1122334567889999997 5444  7999998766555544


Q ss_pred             cccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ...         ..+.+...+.++..+++. .+.+++..++.+++++++.+.|++ +|++.+....    ..++.+.++ 
T Consensus       251 ~~~---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~g~~~~~~~----~~~~~~~~~-  314 (367)
T 3euc_A          251 VRP---------PYNVNVLTEATALFALEH-VAVLDEQAAQLRAERSRVAEGMAA-HGGVTVFPSA----ANFLLARVP-  314 (367)
T ss_dssp             GCC---------SSCCCHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHT-STTCEECCCS----SSEEEEECS-
T ss_pred             hCC---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCcEECCCC----CeEEEEECC-
Confidence            332         225677777777777766 445788999999999999999999 8888865421    344555554 


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                       +..++...|  +||.+.+|..|..                 ...++|||+++   +++|+++++++|+++++
T Consensus       315 -~~~~l~~~l~~~gi~v~~~~~~~~-----------------~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          315 -DAAQTFDRLLARKVLIKNVSKMHP-----------------LLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             -CHHHHHHHHHTTTEECEECGGGCG-----------------GGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHCCeEEEECCccCC-----------------CCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence             566666666  6999998876532                 12389999987   79999999999998753

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=100.00  E-value=1.6e-32  Score=271.74  Aligned_cols=337  Identities=11%  Similarity=0.063  Sum_probs=254.5

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESN  131 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~  131 (457)
                      ..++|.|..+.+. +.++++.+++.+.+.+..       +.|+....+..+++++.+++.+|  ++++++++|+|+|+|+
T Consensus        26 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~   98 (391)
T 3dzz_A           26 KEKELPMWIAEMDFKIAPEIMASMEEKLKVAA-------FGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAI   98 (391)
T ss_dssp             CTTCEECCSSCCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHH
T ss_pred             CCCceeccccCCCCCCCHHHHHHHHHHHhcCc-------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHH
Confidence            3467888877655 678999999999886421       11111134677788888888888  5677899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CC--CCCCHHHHHHhcC-CCceEEEEecccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-AD--GIVNLDELRAAIR-PDTGLISVMAVNN  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~--~~~d~~~le~~i~-~~t~li~i~~~~~  207 (457)
                      +++++++.    ++|++|+++.+.|.++...++..   |.+++.++.+ .+  +.+|+++++++++ +++++|++++++|
T Consensus        99 ~~~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~n  171 (391)
T 3dzz_A           99 SAMVRQFT----SPGDQILVQEPVYNMFYSVIEGN---GRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHN  171 (391)
T ss_dssp             HHHHHHHS----CTTCEEEECSSCCHHHHHHHHHT---TCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBT
T ss_pred             HHHHHHhC----CCCCeEEECCCCcHHHHHHHHHc---CCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCC
Confidence            99999987    89999999999999988877665   9999999885 22  2489999999998 7899999999999


Q ss_pred             cccccc---ChHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCc---cc--EEEeccccccCCCC--ceEEEEe-c
Q 040741          208 EIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWN---VS--LMSLSGHKIYGPKG--VGALYMR-R  272 (457)
Q Consensus       208 ~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~---~D--i~~~s~~K~~g~~G--~G~l~~~-~  272 (457)
                      |+|.+.   ++++|.++|++||+++|+|++|+.+.    ....+....   .|  +++.|+||.+|.+|  +|+++++ +
T Consensus       172 ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~r~G~~~~~~~  251 (391)
T 3dzz_A          172 PIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAALHAACAIIPNP  251 (391)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTTCCEEEECCSH
T ss_pred             CCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccchhheEEEECCH
Confidence            999994   58899999999999999999998532    222332222   45  99999999776444  8999987 5


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +..+++......      ....+++...+.++..+++...+.+++..++.+++++++.+.|++.+|++.+..+..   ..
T Consensus       252 ~~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~  322 (391)
T 3dzz_A          252 DLRARAEESFFL------AGIGEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSNA---SY  322 (391)
T ss_dssp             HHHHHHHHHHHH------HTCSSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCCB---SS
T ss_pred             HHHHHHHHHHHh------hccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccCc---eE
Confidence            554544433211      112356667777777777665555788899999999999999987567888765432   23


Q ss_pred             eEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          353 NLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       353 ~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .+.+.++.  .+..++...|   +||.+.+|..|...                 ..+++||+++  ++++++++++++|+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~  383 (391)
T 3dzz_A          323 LAWVDISALGMNAEDFCKYLREKTGLIISAGNGYRGN-----------------GHEFVRINLA--CPKELVIDGMQRLK  383 (391)
T ss_dssp             EEEEECGGGCSCHHHHHHHHHHHHCEECEESGGGCTT-----------------GGGEEEEECC--SCHHHHHHHHHHHH
T ss_pred             EEEEehhhcCCCHHHHHHHHHHhCCEEEeCchhhCCC-----------------CCCEEEEEec--CCHHHHHHHHHHHH
Confidence            33455553  4566777666   48999998876531                 2389999998  58999999999999


Q ss_pred             HHHHHH
Q 040741          428 KQVEKL  433 (457)
Q Consensus       428 ~~~~~~  433 (457)
                      ++++++
T Consensus       384 ~~l~~~  389 (391)
T 3dzz_A          384 QGVLNL  389 (391)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            998764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=100.00  E-value=2.2e-32  Score=270.22  Aligned_cols=332  Identities=19%  Similarity=0.191  Sum_probs=251.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .+.++|+.+.+. +.++.+.+++.+.+..  .+.      |+.  .....++++.++++++++++++++|+|||+|+.++
T Consensus        25 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~--~~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~   94 (381)
T 1v2d_A           25 LGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ------YAP--PAGLPALREALAEEFAVEPESVVVTSGATEALYVL   94 (381)
T ss_dssp             HTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCS------CCC--TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcC------CCC--CCCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHH
Confidence            356778776665 5789999999998764  111      111  12356899999999999888899999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++++.    ++|++|++..+.|.++...++..   |.+++.++.+   .++.+|++++++++++++++|++++++||+|.
T Consensus        95 ~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~  167 (381)
T 1v2d_A           95 LQSLV----GPGDEVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGL  167 (381)
T ss_dssp             HHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCC
T ss_pred             HHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCCCCccCCcCHHHHHHhcCcCCEEEEECCCCCCCCC
Confidence            99987    89999999999999988766554   9999999986   45778999999999999999999999999999


Q ss_pred             ccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC--CCcccEEEeccccccCCCC--ceEEEEecCCCcccccc
Q 040741          212 IQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPL  281 (457)
Q Consensus       212 ~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~  281 (457)
                      +.|   +++|.++|++||+++|+|++|+.+..   +.++.  ..+.|+++.|+||.+|++|  +|+++++++..+.+...
T Consensus       168 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~~~~~~~  247 (381)
T 1v2d_A          168 VFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGM  247 (381)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHhcCCCEEEEeechhhcCCcccceEEEEeCHHHHHHHHHH
Confidence            987   88999999999999999999985432   22222  3468999999999888666  89999987766555433


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      ..       ....+.+.....++..+++..  .+.+++..++++++++++.+.|++  .++.+..+..   +.++.+.++
T Consensus       248 ~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~---~~~~~~~~~  315 (381)
T 1v2d_A          248 RQ-------WTSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA--MGLRVYVPEG---TYFLMAELP  315 (381)
T ss_dssp             HH-------HHTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH--TTCCEECCSB---SSEEEEECT
T ss_pred             Hh-------hcccCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHH--CCCEecCCCc---ceEEEEecC
Confidence            21       112356677777777777765  345788899999999999999998  4777765421   334445554


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      ..+   +...+  +||.+.+|..|...               ....+++||+++.  +++++++++++|++++++.++.
T Consensus       316 ~~~---~~~~l~~~gi~v~~g~~~~~~---------------~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r~~  374 (381)
T 1v2d_A          316 GWD---AFRLVEEARVALIPASAFYLE---------------DPPKDLFRFAFCK--TEEELHLALERLGRVVNSPREA  374 (381)
T ss_dssp             TCC---HHHHHHHTCEECEEGGGGCSS---------------SCCTTEEEEECCS--CHHHHHHHHHHHHHHC------
T ss_pred             hHh---HHHHHHhCCEEEecchHhCCC---------------CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcccc
Confidence            332   44333  69999988766431               1123799999987  8999999999999998876543

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=100.00  E-value=3.8e-32  Score=269.16  Aligned_cols=332  Identities=11%  Similarity=0.148  Sum_probs=253.5

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~  132 (457)
                      .+.+.|..+.+. +.++++.+++.+.+.+..       +.++....+..+++++.+++++|  ++++++++|+|+|+|++
T Consensus        32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~  104 (391)
T 4dq6_A           32 NDLLPMWVADMDFKAAPCIIDSLKNRLEQEI-------YGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAIS  104 (391)
T ss_dssp             SCSEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHH
T ss_pred             CCceeccccCCCCCCCHHHHHHHHHHHhCCC-------CCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHH
Confidence            567888877666 678999999999886421       11222235788889999999999  67788999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCC--CCCHHHHHHhcCCCceEEEEeccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADG--IVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~--~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      ++++++.    ++|++|++..+.|.++...++..   |.+++.++.+  .++  .+|++++++++++ +++|++++++||
T Consensus       105 ~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~v~i~~p~np  176 (391)
T 4dq6_A          105 LLINELT----KANDKIMIQEPVYSPFNSVVKNN---NRELIISPLQKLENGNYIMDYEDIENKIKD-VKLFILCNPHNP  176 (391)
T ss_dssp             HHHHHHS----CTTCEEEECSSCCTHHHHHHHHT---TCEEEECCCEECTTSCEECCHHHHHHHCTT-EEEEEEESSBTT
T ss_pred             HHHHHhC----CCCCEEEEcCCCCHHHHHHHHHc---CCeEEeeeeeecCCCceEeeHHHHHHHhhc-CCEEEEECCCCC
Confidence            9999987    89999999999999998877665   9999999887  333  4899999999998 999999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCc-----ccEEEeccccccCCCC--ceEEEEec-C
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWN-----VSLMSLSGHKIYGPKG--VGALYMRR-R  273 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~-----~Di~~~s~~K~~g~~G--~G~l~~~~-~  273 (457)
                      +|.+.|   +++|.++|++||+++|+|++|+....    ...+....     ..+++.|++|.+|.+|  +|++++++ +
T Consensus       177 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~  256 (391)
T 4dq6_A          177 VGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGLQSSYVVLPDEK  256 (391)
T ss_dssp             TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGGCCEEEECCSHH
T ss_pred             CCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCcccceEEEEeCCHH
Confidence            999955   78899999999999999999986322    22232222     3388999999776444  89999876 4


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ..+++......      ...++++...+.++.++++...+.+++..++.+++++++.+.|++.+|++.+..+..   ...
T Consensus       257 ~~~~~~~~~~~------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~  327 (391)
T 4dq6_A          257 DYKLLDDAFTR------IDIKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINENMPKLKVRKPEG---TYL  327 (391)
T ss_dssp             HHHHHHHHHHH------TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCSB---SSE
T ss_pred             HHHHHHHHHHh------hcCCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEecCCCc---cEE
Confidence            44444433221      123467777777777777764445788899999999999999987468888875432   223


Q ss_pred             EEEEEc--cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          354 LNLSFA--YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       354 ~~~~~~--~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      +.+.++  +.+..++...|  + ||.+.+|..|...                 ..+++||+++  ++++++++++++|++
T Consensus       328 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~iRis~~--~~~~~i~~~l~~l~~  388 (391)
T 4dq6_A          328 LWVDFSALGLSDEELESILVQKGKVALNQGNSFGIG-----------------GSGYQRINLA--CPRSMLEEALIRIKN  388 (391)
T ss_dssp             EEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTT-----------------CTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred             EEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCC-----------------CCCeEEEEEc--CCHHHHHHHHHHHHH
Confidence            335555  34666777766  5 9999998776431                 2389999998  589999999999998


Q ss_pred             HH
Q 040741          429 QV  430 (457)
Q Consensus       429 ~~  430 (457)
                      ++
T Consensus       389 ~l  390 (391)
T 4dq6_A          389 AI  390 (391)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=3.4e-31  Score=265.78  Aligned_cols=332  Identities=16%  Similarity=0.148  Sum_probs=254.0

Q ss_pred             cEEecCCCCC----CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           58 PLYLDMQATT----PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        58 ~i~l~~~~~~----~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      .-|+|+.++.    ..++++.+++.+.+.... +++.+ .+..|  ..+...++++.+++++|.+  +.+++++|++|+.
T Consensus        64 ~~~id~~~~~~lg~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~G--~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~  138 (427)
T 2w8t_A           64 KDTILLGTYNYMGMTFDPDVIAAGKEALEKFGSGTCGS-RMLNG--TFHDHMEVEQALRDFYGTT--GAIVFSTGYMANL  138 (427)
T ss_dssp             EEEEECSCCCTTCGGGCHHHHHHHHHHHHHHCSCCCSC-TTTTC--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHH
T ss_pred             ceEEEEECcccccCCCCHHHHHHHHHHHHHhCCCCccc-ccccC--CcHHHHHHHHHHHHHhCCC--ceEEecCcHHHHH
Confidence            3455655554    367999999999887621 22221 12222  2367889999999999985  4777888899999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNE  208 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~  208 (457)
                      .+++++.    ++|+.|+++.++|.++..+++..   |.+++.++.     +|+++|++++++    ++++|++++++||
T Consensus       139 ~al~~l~----~~gd~vl~~~~~h~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~  206 (427)
T 2w8t_A          139 GIISTLA----GKGEYVILDADSHASIYDGCQQG---NAEIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSM  206 (427)
T ss_dssp             HHHHHHS----CTTCEEEEETTCCHHHHHHHHHS---CSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETT
T ss_pred             HHHHHhc----CCCCEEEECCcccHHHHHHHHHc---CCeeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCC
Confidence            9999887    89999999999999999887665   999988874     499999999876    7899999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCc---------ccCCCCcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP---------VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---------~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      +|.+.|+++|.++|++||+++|+|++|+.+...         +++. .++|++++|++|.+|++| |+++++++.++.+.
T Consensus       207 tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~-~~~di~~~s~sK~~g~~g-G~v~~~~~l~~~l~  284 (427)
T 2w8t_A          207 LGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE-GQIDFVVGTFSKSVGTVG-GFVVSNHPKFEAVR  284 (427)
T ss_dssp             TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT-TCCSEEEEESSSTTCSCC-EEEEECCTTGGGGG
T ss_pred             CCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC-cCCcEEEecchhhhccCC-CEEEeCHHHHHHHH
Confidence            999999999999999999999999999977654         3332 267999999999889887 99999887776665


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      .....+     ...++.++..++++.++++.+. .+++..++++++++++.+.|++ + ++.+.++.  ...+++.+.++
T Consensus       285 ~~~~~~-----~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~--~~~~~~~~~~~  354 (427)
T 2w8t_A          285 LACRPY-----IFTASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKA-M-GFRLGTET--CDSAIVAVMLE  354 (427)
T ss_dssp             GTCHHH-----HSSCCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHH-H-TCEESCSS--CCSSEEEEEES
T ss_pred             Hhcccc-----cccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH-c-CCcccCCC--CCCCEEEEEEC
Confidence            432110     1234677777777777887754 4678899999999999999998 5 77776332  12455666665


Q ss_pred             c-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          360 Y-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       360 ~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      . .....+...|  +||.+.++..+..                ..+.+++||+++..++++|+++++++|+++++++.
T Consensus       355 ~~~~~~~l~~~L~~~Gi~v~~~~~~~~----------------~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~  416 (427)
T 2w8t_A          355 DQEQAAMMWQALLDGGLYVNMARPPAT----------------PAGTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVG  416 (427)
T ss_dssp             SHHHHHHHHHHHHHTTEECEEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCeEEeeeCCCCC----------------CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence            3 2345566655  6999988765432                11237999999999999999999999999988764

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=100.00  E-value=7.3e-32  Score=267.16  Aligned_cols=332  Identities=13%  Similarity=0.121  Sum_probs=249.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCc-EEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKE-IIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~-i~~t~g~  127 (457)
                      .+.++|+.+.+. +.++++.+++.+.+.... .    .|  +.  .....++++.+++++    |  +++++ +++|+||
T Consensus        26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y--~~--~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~   96 (389)
T 1gd9_A           26 KDVISLGIGEPDFDTPQHIKEYAKEALDKGL-T----HY--GP--NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGA   96 (389)
T ss_dssp             SSCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C----SC--CC--TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESST
T ss_pred             cCeEecCCCCCCCCCCHHHHHHHHHHHhCCC-C----CC--CC--CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCCh
Confidence            467888887776 578999999999886421 0    11  11  012345566666665    8  46778 9999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |+|+.++++++.    ++|++|++..+.|+++...++..   |.+++.++.+.  ++.+|++++++++++++++|+++++
T Consensus        97 ~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~~  169 (389)
T 1gd9_A           97 NQAFLMGLSAFL----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINSP  169 (389)
T ss_dssp             THHHHHHHTTTC----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEESS
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCCccCCCCCHHHHHHhcCcCceEEEEECC
Confidence            999999999887    88999999999999998887766   99999999874  3568999999999989999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC----CcccEEEeccccccCCCC--ceEEEEec
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      +||+|.+.|   +++|.++|++||+++|+|++|+.+..    ...+..    .+.|+++.|+||.+|++|  +|++++++
T Consensus       170 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~  249 (389)
T 1gd9_A          170 CNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAPS  249 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECCH
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCcccceEEEEECH
Confidence            999999986   88999999999999999999986543    112221    357899999999888666  79999987


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      +..+++.....++       ..+.+.....++..+++....  .+++..++++++++++.+.|++ + ++.+..+..   
T Consensus       250 ~~~~~l~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---  317 (389)
T 1gd9_A          250 WIIERMVKFQMYN-------ATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKPKG---  317 (389)
T ss_dssp             HHHHHHHHHHTTT-------TCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCB---
T ss_pred             HHHHHHHHHHhhh-------ccCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe---
Confidence            6666555443321       125566666666667765444  5788889999999999999998 5 666654321   


Q ss_pred             cceEEEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          351 IGNLNLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       351 ~~~~~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      +.++.+.++  +.+..++...|   +||.+.+|..|..                 ...+++||+++.  +++++++++++
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRi~~~~--~~~~i~~~l~~  378 (389)
T 1gd9_A          318 AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYAT--AYEKLEEAMDR  378 (389)
T ss_dssp             TTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECCS--CHHHHHHHHHH
T ss_pred             eeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence            223333444  23555666655   5899998876532                 123799999985  79999999999


Q ss_pred             HHHHHHHHH
Q 040741          426 TVKQVEKLR  434 (457)
Q Consensus       426 l~~~~~~~~  434 (457)
                      |++++++.+
T Consensus       379 l~~~~~~~~  387 (389)
T 1gd9_A          379 MERVLKERK  387 (389)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHhcc
Confidence            999987643

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=100.00  E-value=5.7e-32  Score=267.84  Aligned_cols=335  Identities=15%  Similarity=0.083  Sum_probs=243.1

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESN  131 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~  131 (457)
                      +.+.++|+.+.+. +.++.+.+++.+.+.....     .+.......+..+.+.+.+.+.+|.  +++++++|+|||+|+
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~  103 (388)
T 1j32_A           29 GIDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-----RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSI  103 (388)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHH
Confidence            3567788777665 5679999999988754210     0110111223444444444444464  567899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +++++++.    ++|++|+++.+.|+++...++..   |.+++.++.+.  ++.+|++++++++++++++|++++++||+
T Consensus       104 ~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~npt  176 (388)
T 1j32_A          104 FNLMLAMI----EPGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPT  176 (388)
T ss_dssp             HHHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHHHHHhc----CCCCEEEEcCCCChhHHHHHHHc---CCEEEEecCCcccCCCCCHHHHHHhcCcCceEEEEeCCCCCC
Confidence            99999987    89999999999999988776655   99999999874  56789999999999999999999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----cc---CCC--CcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VD---VEK--WNVSLMSLSGHKIYGPKG--VGALYMRRRPR  275 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~---~~~--~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~  275 (457)
                      |.+.|   +++|.++|++||+++|+|++|+.+...    ..   +..  .+.|+++.|+||.+|++|  +|+++++++..
T Consensus       177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G~~~~~~~~~  256 (388)
T 1j32_A          177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLV  256 (388)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHH
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCCcccceEEEEeCHHHH
Confidence            99976   889999999999999999999864321    11   111  357899999999888777  89999987765


Q ss_pred             ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                      +++.....++.       ...+.....++..+++...+.+++..++++++++++.+.|++ ++++.+..+..   +.++.
T Consensus       257 ~~l~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~~  325 (388)
T 1j32_A          257 KAATKIQGHST-------SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMF  325 (388)
T ss_dssp             HHHHHHHHTTT-------CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEEC
T ss_pred             HHHHHHHhhcc-------cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHhh-CCCCcccCCCe---eEEEE
Confidence            55544332211       133444444444555433334778888999999999999998 78887665322   22222


Q ss_pred             EEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          356 LSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       356 ~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.++  +.+..++...|   +||.+.+|..|..                   .+++||+++  ++++++++++++|++++
T Consensus       326 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~~~i~~~~~~l~~~l  384 (388)
T 1j32_A          326 PSIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFL  384 (388)
T ss_dssp             CBCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCcEEEEec--CCHHHHHHHHHHHHHHH
Confidence            3333  23456676665   4999988865532                   278999997  58999999999999998


Q ss_pred             HHH
Q 040741          431 EKL  433 (457)
Q Consensus       431 ~~~  433 (457)
                      +++
T Consensus       385 ~~~  387 (388)
T 1j32_A          385 HGI  387 (388)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=100.00  E-value=1.4e-31  Score=268.63  Aligned_cols=335  Identities=15%  Similarity=0.115  Sum_probs=250.9

Q ss_pred             CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-----CCCCcEEEeC
Q 040741           56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-----ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-----~~~~~i~~t~  125 (457)
                      .+.|+|+.+.+.     ++++++.+++.+.+.....+        +|.......++++.++++++     ++++++++|+
T Consensus        54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--------~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~  125 (427)
T 3dyd_A           54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--------GYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTS  125 (427)
T ss_dssp             SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--------SCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEES
T ss_pred             CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--------CCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEec
Confidence            456899887754     68899999999998753111        11111346789999999998     6778899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEe
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |||+|++++++++.    ++|++|+++.+.|..+...++..   |.+++.++.+  .++.+|++++++++++++++|+++
T Consensus       126 g~t~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~i~  198 (427)
T 3dyd_A          126 GCSQAIDLCLAVLA----NPGQNILVPRPGFSLYKTLAESM---GIEVKLYNLLPEKSWEIDLKQLEYLIDEKTACLIVN  198 (427)
T ss_dssp             SHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHSSCCTTEEEEEEE
T ss_pred             CcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHhccCCCEEEEE
Confidence            99999999999988    89999999999999888776655   9999999876  356789999999999999999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCcc---cEEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWNV---SLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~---Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||+|.+.|   +++|+++|+++|+++|+|++|+...    ....+...+.   .+++.|++|.||.+|  +|+++++
T Consensus       199 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~riG~~~~~  278 (427)
T 3dyd_A          199 NPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGWRLGWILIH  278 (427)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGGCCEEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCcceEEEEec
Confidence            99999999999   9999999999999999999998532    2222222222   266789999877666  8999998


Q ss_pred             cCCCc---cccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          272 RRPRI---RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       272 ~~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                      ++...   .+...+...    .....+++.....++.++++.. .+.+++..++++++++++.+.|++ +|++.+..+..
T Consensus       279 ~~~~~~~~~i~~~l~~~----~~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~p~~  353 (427)
T 3dyd_A          279 DRRDIFGNEIRDGLVKL----SQRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA-IPGLRPVRPSG  353 (427)
T ss_dssp             CSTTSSHHHHHHHHHHH----HHHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH-STTEEEECCSB
T ss_pred             CcchhhHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc-CCCceecCCCe
Confidence            64211   111111000    0012367777777777777642 345788889999999999999999 88988765422


Q ss_pred             CcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          348 RRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       348 ~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                         ..++.+.++.      .+..++...|   +||.+.+|..|..                   .+++||+++  +++++
T Consensus       354 ---g~~~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~-------------------~~~iRis~~--~~~e~  409 (427)
T 3dyd_A          354 ---AMYLMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY-------------------PNFIRVVIT--VPEVM  409 (427)
T ss_dssp             ---TTEEEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEESC--SCHHH
T ss_pred             ---eEEEEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC-------------------CCeEEEEEC--CCHHH
Confidence               3344445541      2345565554   5999999876542                   279999987  68999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 040741          419 VDRAIELTVKQVEKLR  434 (457)
Q Consensus       419 id~~~~~l~~~~~~~~  434 (457)
                      |++++++|++++++++
T Consensus       410 i~~~l~~l~~~l~~~~  425 (427)
T 3dyd_A          410 MLEACSRIQEFCEQHY  425 (427)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            9999999999998765

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=100.00  E-value=3.8e-32  Score=268.40  Aligned_cols=335  Identities=13%  Similarity=0.129  Sum_probs=250.6

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      +++++++++.+.    +++|..  +..+....+.++++++.+++++|++ +.++||+|||+|+++++.. .    .+|++
T Consensus         9 ~~~~~~~~~~~~----~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~sgt~a~~~~~~~-~----~~gd~   76 (379)
T 3ke3_A            9 IDPNGLLEYSVV----YTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-AAVIIPGSGTYGMEAVARQ-L----TIDED   76 (379)
T ss_dssp             CSTTSCCCCCSS----CCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-EEEEEESCHHHHHHHHHHH-H----CTTCE
T ss_pred             CCHHHHHHHHHh----ccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-CEEEEcCChhHHHHHHHHh-C----CCCCe
Confidence            344444444332    455532  3335666789999999999999987 6799999999999998754 3    58999


Q ss_pred             EEEcCCCCcchHHHHHHHHhcC--cEEEEEeCCCC---------CCCCHHHHHHhcC-CCceEEEEeccccccccccC--
Q 040741          149 VITTQTEHKCVLDSCRHLQQEG--FEITYLPVGAD---------GIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQP--  214 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G--~~v~~v~~~~~---------~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~--  214 (457)
                      ||+....|.+.... ..+...|  .++++++.+.+         +.+|+++++++++ +++++|++++++|++|.+.|  
T Consensus        77 vi~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~  155 (379)
T 3ke3_A           77 CLIIRNGWFSYRWT-QILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEE  155 (379)
T ss_dssp             EEEEECSHHHHHHH-HHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHH
T ss_pred             EEEEeCCchhHHHH-HHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHH
Confidence            99998888775422 2333335  48888886532         2589999999995 58999999999999999999  


Q ss_pred             -hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCcccccccc-CC------
Q 040741          215 -MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLIN-GG------  285 (457)
Q Consensus       215 -l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~-~~------  285 (457)
                       +++|.++|++||+++|+|++++ |..++++..+++|++++|+|| +.||.|+|+++++++..+++.+... +.      
T Consensus       156 ~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~  234 (379)
T 3ke3_A          156 YIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQ  234 (379)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHH
T ss_pred             HHHHHHHHHHHcCCEEEEEeccc-CCccccccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHH
Confidence             9999999999999999999999 888888877789999999999 5568889999999876655543211 11      


Q ss_pred             ------cccccc--ccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          286 ------GQERGI--RSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       286 ------~~~~~~--~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                            .++.+.  ..+++++..++++.++++.+.+. ++++.++.+++++++++.|.+ + ++.+..++..+.+.+..+
T Consensus       235 ~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~-g~~~~~~~~~~~~~i~~~  312 (379)
T 3ke3_A          235 WLTIMRAYENGGHAYHATMPTDSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTD-K-GIESVAAEGFEAPGVVVS  312 (379)
T ss_dssp             HHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-T-TCCBSBCTTCBCSSEEEE
T ss_pred             HHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCccccCceEEEE
Confidence                  011111  23589999999999999988764 899999999999999999999 5 777766544444444444


Q ss_pred             EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .....+. .....|  +||.+.+|..|+.+.              ....+.|||+++.++|++||++++++|+++++++.
T Consensus       313 ~~~~~~~-~~~~~L~~~Gi~v~~g~~~~~~~--------------~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~~  377 (379)
T 3ke3_A          313 YTERDDM-HKGSAFAEAGLQIAAGVPLKVGE--------------PDNFKTFRLGLFGLDKLTDIDGTVERFEKALDEVL  377 (379)
T ss_dssp             ECSCHHH-HSSHHHHHTTCCCEECCCCSSCC--------------CTTCCEEEEECCSHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             ccCCcch-HHHHHHHHCCeEEeCCccccccc--------------cCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHhc
Confidence            4332211 113333  699988887665310              12247999999999999999999999999998775

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=100.00  E-value=9.4e-31  Score=268.78  Aligned_cols=317  Identities=21%  Similarity=0.268  Sum_probs=244.3

Q ss_pred             HHHHHHHHHHHHHHHhCCCC--CcE--EEeCChHHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhcC
Q 040741           99 SEVAVETARSQIADLIGASP--KEI--IFTSGATESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQEG  170 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~--~~i--~~t~g~T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~G  170 (457)
                      ......++++++++++|.++  +++  ++|+|||+|+.++++++.....    .++++|+++.+.|.++..+++..   |
T Consensus       137 ~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~~~~~~~~~~~---G  213 (514)
T 3mad_A          137 TAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAHAAFDKAAQYF---G  213 (514)
T ss_dssp             HHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSCTHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccchHHHHHHHHc---C
Confidence            34566678899999999874  556  9999999999999999873210    11289999999999999988887   9


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC----------
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI----------  240 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~----------  240 (457)
                      ++++.++.+.++.+|+++|+++|++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+..          
T Consensus       214 ~~v~~v~~~~~~~~d~~~Le~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~~~~~g~~~  293 (514)
T 3mad_A          214 IKLVRTPLDADYRADVAAMREAITPNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPWAERLGYPV  293 (514)
T ss_dssp             CEEEEECBCTTSCBCHHHHHHHCCTTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHHHHHTTCCC
T ss_pred             CeeEEeeeCCCCCCCHHHHHHHhccCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchhHHhcCCCC
Confidence            9999999998899999999999999999999999999999999999999999999999999999875432          


Q ss_pred             -cccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc----cCCccccccccCCCChhHHHHHHHHHHHHHH-
Q 040741          241 -PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI----NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-  313 (457)
Q Consensus       241 -~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~----~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-  313 (457)
                       +++....++|++++|+||+ +|+.|+|+++++++...+.....    .++........|+.+.....++.+++..+.. 
T Consensus       294 ~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~aal~~l~~~  373 (514)
T 3mad_A          294 PPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWAAMLSLGEE  373 (514)
T ss_dssp             CCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHHHHHHHhHH
Confidence             3455566899999999995 78888999999876443322111    1111111223456666667777777776544 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHH
Q 040741          314 EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYV  391 (457)
Q Consensus       314 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~  391 (457)
                      ++++..++..++++++.+.|++ ++++.+..++    .+++.+.....+..++...|  +||.+ +|..+          
T Consensus       374 ~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~----~~~~~~~~~~~~~~~l~~~L~~~Gi~v-~g~~~----------  437 (514)
T 3mad_A          374 GYLDATRRILQAADRLKAGVRA-IPSLKILGDP----LWVIAVASDELNIYQVMEEMAGRGWRL-NGLHR----------  437 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT-STTCEESSCC----SSEEEEECSSSCHHHHHHHHHTTTCBC-EEETT----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-CCCeEEeCCC----eEEEEEeCCCCCHHHHHHHHHhcCCEe-ccCCC----------
Confidence            5889999999999999999999 8899888654    23445554545566777766  57766 33221          


Q ss_pred             HHHcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhc-------ChhHHHHHh
Q 040741          392 LRALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREM-------SPLYEMVKE  445 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~-------~~~~~~~~~  445 (457)
                                 .+.+|++++.. ++++++++++++|+++++++++.       .++|.|.+.
T Consensus       438 -----------~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~~~~~~~~~~~~~yg~~~~  488 (514)
T 3mad_A          438 -----------PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVRAHPEKATGMAPVYGMAAA  488 (514)
T ss_dssp             -----------TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHHHCTTCCCTTHHHHHHHHH
T ss_pred             -----------CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCceehhhhccc
Confidence                       16899999844 56799999999999999987643       356666654

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=100.00  E-value=7.5e-32  Score=265.30  Aligned_cols=322  Identities=16%  Similarity=0.160  Sum_probs=243.1

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~  127 (457)
                      ..++++|+.+.+. +.++++.+++.+.+.... +      .|+.  .....++++.++++++      ++++++++|+||
T Consensus        28 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~--~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~   98 (370)
T 2z61_A           28 GKKVIHLEIGEPDFNTPKPIVDEGIKSLKEGK-T------HYTD--SRGILELREKISELYKDKYKADIIPDNIIITGGS   98 (370)
T ss_dssp             TCCCEECCCCSCSSCCCHHHHHHHHHHHHTTC-C------SCCC--TTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHHcCc-c------CCCC--CCCCHHHHHHHHHHHHHHhCCCCChhhEEECCCh
Confidence            3567888887776 368999999999886421 0      1110  1224456667776664      567789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      |+|+.++++++.    ++|++|++..+.|+++...++..   |.+++.++      +|++++++++++++++|++++++|
T Consensus        99 ~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~------~d~~~l~~~l~~~~~~v~~~~p~n  165 (370)
T 2z61_A           99 SLGLFFALSSII----DDGDEVLIQNPCYPCYKNFIRFL---GAKPVFCD------FTVESLEEALSDKTKAIIINSPSN  165 (370)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEEC------SSHHHHHHHCCSSEEEEEEESSCT
T ss_pred             HHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeC------CCHHHHHHhcccCceEEEEcCCCC
Confidence            999999999987    89999999999999998877655   99999887      689999999998999999999999


Q ss_pred             ccccccChHHHHHHHHhcCCcEEEehhhhcCCC---cccCC----CCcccEEEeccccccCCCC--ceEEEEecCCCccc
Q 040741          208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---PVDVE----KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRV  278 (457)
Q Consensus       208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~----~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~  278 (457)
                      |+|.+.|++ |.++|++||+++|+|++|+.+..   +.++.    ..+.|+++.|+||.+|++|  +|+++++++..+++
T Consensus       166 ptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~  244 (370)
T 2z61_A          166 PLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGWRIGYVISNDEIIEAI  244 (370)
T ss_dssp             TTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGGCCEEEECCHHHHHHH
T ss_pred             CcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccceEEEEEECHHHHHHH
Confidence            999999999 99999999999999999986543   22222    2367899999999888666  89999988666555


Q ss_pred             cccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE
Q 040741          279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  357 (457)
                      .....++       .++.+...+.++.++++. ....+++..++++++++++.+.|.+ + ++.+..+..   +.++.+.
T Consensus       245 ~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~~~~~  312 (370)
T 2z61_A          245 LKLQQNL-------FISAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKD-F-GWEVNNPIG---AYYVFPN  312 (370)
T ss_dssp             HHHHHHH-------TSSSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCCCCCB---TTEECCB
T ss_pred             HHHHhhc-------ccCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH-c-CCeecCCCc---ceEEEEe
Confidence            4433221       235666767766667765 4456788889999999999999998 5 666654321   2233334


Q ss_pred             EccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          358 FAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       358 ~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++. +..++...|   +||.+.+|..|..                 ...+++||+++  ++++++++++++|+++++
T Consensus       313 ~~~-~~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          313 IGE-DGREFAYKLLKEKFVALTPGIGFGS-----------------KGKNYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             CSS-CHHHHHHHHHHHHCEECEEGGGGCG-----------------GGSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             cCC-CHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            443 456666655   4999998876531                 12379999999  589999999999998764

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=100.00  E-value=1.3e-31  Score=265.62  Aligned_cols=335  Identities=15%  Similarity=0.143  Sum_probs=242.9

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~  127 (457)
                      ..++|+|+.+.+. ++++++.+++.+.+....         .+|.......++++.+++++    |  ++++++++|+||
T Consensus        30 g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~  100 (391)
T 3h14_A           30 GRRIIHMEVGQPGTGAPRGAVEALAKSLETDA---------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGS  100 (391)
T ss_dssp             TCCCEECCCSSCSSCSCHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC---------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecCh
Confidence            4567888877666 568899999999875411         11222223456666666666    4  577889999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.+  ..+|+++++++   ++++|+++++
T Consensus       101 ~~al~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~---~~~~v~i~~p  170 (391)
T 3h14_A          101 SGGFLLAFTALF----DSGDRVGIGAPGYPSYRQILRAL---GLVPVDLPTAPENRLQPVPADFAGL---DLAGLMVASP  170 (391)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECCGGGTTSCCHHHHTTS---CCSEEEEESS
T ss_pred             HHHHHHHHHHhc----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHhc---CCeEEEECCC
Confidence            999999999998    89999999999999988776655   999999998854  36799999877   7899999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC-CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK-WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      +||+|.+.|   +++|+++|++||+++|+|++|+....   +..... .+.++++.|++|.+|++|  +|+++++++..+
T Consensus       171 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~  250 (391)
T 3h14_A          171 ANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGWRVGWMVVPEDQVR  250 (391)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTSCCEEEECCGGGHH
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhcCCCEEEEEechhccCCccceeEEEEeCHHHHH
Confidence            999999998   88899999999999999999984322   222222 245688899999887554  899999877655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      .+......       ...+++.....++.++++ ..+.+++..++++++++++.+.|++ ++...+.. +..  ..++.+
T Consensus       251 ~~~~~~~~-------~~~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~-~~~--~~~~~~  318 (391)
T 3h14_A          251 VVERIAQN-------MFICAPHASQVAALAALD-CDAELQANLDVYKANRKLMLERLPK-AGFTRIAP-PDG--AFYVYA  318 (391)
T ss_dssp             HHHHHHHH-------TTCCCCHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHHHHH-HTCCCBCC-CCB--TTEEEE
T ss_pred             HHHHHHhh-------hccCCCHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHH-cCCCcccC-CCe--eEEEEE
Confidence            55433321       223666666666666666 3446788899999999999999988 53332222 222  233444


Q ss_pred             EEc--cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          357 SFA--YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       357 ~~~--~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .++  ..+..++...+  + ||.+.+|..|...                ...++|||+++.  +++++++++++|+++++
T Consensus       319 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----------------~~~~~iRis~~~--~~~~i~~~l~~l~~~~~  380 (391)
T 3h14_A          319 DVSDLTDDSRAFAAEILEKAGVAVTPGLDFDPE----------------RGAGTLRFSYAR--ATADIEEGLDRLEAFMQ  380 (391)
T ss_dssp             ECTTTCSCHHHHHHHHHHHHCEECEEGGGTCTT----------------TGGGEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred             ecCccCCCHHHHHHHHHHHCCEEEcCchhhCCC----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence            554  34566776664  3 9999999877541                123799999987  78999999999999998


Q ss_pred             HHHhcCh
Q 040741          432 KLREMSP  438 (457)
Q Consensus       432 ~~~~~~~  438 (457)
                      +.....+
T Consensus       381 ~~~~~~~  387 (391)
T 3h14_A          381 ARGEGHH  387 (391)
T ss_dssp             HC-----
T ss_pred             Hhccccc
Confidence            7665544

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=100.00  E-value=7.9e-32  Score=266.71  Aligned_cols=327  Identities=16%  Similarity=0.143  Sum_probs=239.7

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCChH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~i~~t~g~T  128 (457)
                      .+.+.|+.+.+. +.++.+.+++.+.+.....     .|...    ....++++.+++++    |.  +++++++|+|+|
T Consensus        31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~-----~y~~~----~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~  101 (385)
T 1b5p_A           31 VDLVALTAGEPDFDTPEHVKEAARRALAQGKT-----KYAPP----AGIPELREALAEKFRRENGLSVTPEETIVTVGGS  101 (385)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCCT----TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCC----CCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChH
Confidence            456788777665 5678999999888754210     11111    12334555555554    53  567899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +|+++++.++.    ++||+|+++.++|..+...++..   |.+++.++.+.  ++.+|++++++++++++++|++++++
T Consensus       102 ~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~  174 (385)
T 1b5p_A          102 QALFNLFQAIL----DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNSPN  174 (385)
T ss_dssp             HHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEESSC
T ss_pred             HHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCcccCCCCCHHHHHHhcCCCCEEEEEeCCC
Confidence            99999999987    89999999999999988777655   99999999874  45789999999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--cccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      ||||.+.|   +++|+++|++||+++|+|++|+....   ...+...  +.++++.|+||.+|++|  +|+++++++.++
T Consensus       175 NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~~~  254 (385)
T 1b5p_A          175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIK  254 (385)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCCCCEEEEEechhhcCCcccceEEEEeCHHHHH
Confidence            99999987   88999999999999999999985432   1122222  56789999999988777  899999876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ++.+....+       ..+.+.....++..+++.   ..+.+++..++++++++++.+.|++ + ++.+..+..   ...
T Consensus       255 ~l~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---~~~  322 (385)
T 1b5p_A          255 AMASVSRQS-------TTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA-L-GLKAVRPSG---AFY  322 (385)
T ss_dssp             HHHHHHHTT-------TCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCSB---TTE
T ss_pred             HHHHHHhhc-------cCCCCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCe---eEE
Confidence            554433211       124455555555556653   3445788889999999999999998 5 666654321   223


Q ss_pred             EEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          354 LNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       354 ~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +...++  +.+..++...|  +||.+.+|..|..                   .+++||+++  ++++++++++++|+++
T Consensus       323 ~~~~~~~~~~~~~~l~~~l~~~gv~v~~g~~f~~-------------------~~~iRis~~--~~~~~i~~~l~~l~~~  381 (385)
T 1b5p_A          323 VLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYA--TSEENLRKALERFARV  381 (385)
T ss_dssp             EEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred             EEEecCCCCCCHHHHHHHHHHCCeEEecccccCC-------------------CCeEEEEec--CCHHHHHHHHHHHHHH
Confidence            333443  24556676666  6999999876521                   279999998  6889999999998876


Q ss_pred             HH
Q 040741          430 VE  431 (457)
Q Consensus       430 ~~  431 (457)
                      ++
T Consensus       382 l~  383 (385)
T 1b5p_A          382 LG  383 (385)
T ss_dssp             C-
T ss_pred             Hh
Confidence            54

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=7.7e-32  Score=269.11  Aligned_cols=351  Identities=18%  Similarity=0.149  Sum_probs=247.2

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCC-cEEEeCChHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPK-EIIFTSGATE  129 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~-~i~~t~g~T~  129 (457)
                      ..+.++|+.+.+. +.++++.+++.+.+... .+++.      .....+..+.+.+.+.+.+|.  +++ ++++|+|||+
T Consensus        24 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~------~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~   97 (411)
T 2o0r_A           24 RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGGVNQYPP------GPGSAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATE   97 (411)
T ss_dssp             TTTCEESSCSSCSSCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHH
T ss_pred             cCCeeeccCcCCCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHH
Confidence            3467888887766 57899999999998651 11111      111123333344444444474  566 8999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC---CCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA---DGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~---~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      |+.++++++.    ++|++|+++.+.|+++...++..   |.+++.++.+.   ++.+|++++++++++++++|++++++
T Consensus        98 al~~~~~~~~----~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~~~  170 (411)
T 2o0r_A           98 AIAAAVLGLV----EPGSEVLLIEPFYDSYSPVVAMA---GAHRVTVPLVPDGRGFALDADALRRAVTPRTRALIINSPH  170 (411)
T ss_dssp             HHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHHHCCTTEEEEEEESSC
T ss_pred             HHHHHHHHhc----CCCCEEEEeCCCcHhHHHHHHHc---CCEEEEeeccccccCCCCCHHHHHHhhccCceEEEEeCCC
Confidence            9999999987    89999999999999988776554   99999999864   35689999999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---C-CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---E-KWNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~-~~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      ||+|.+.|   +++|.++|++||+++|+|++|+.+..    +..+   . ..+.|+++.|++|.+|++|  +|+++++++
T Consensus       171 nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~  250 (411)
T 2o0r_A          171 NPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGWKIGWACGPAE  250 (411)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTTCEEEEECCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCCccceEEEEeeCHH
Confidence            99999988   58999999999999999999986432    1122   1 1467999999999888777  899999876


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ..+++......       ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+..   +.+
T Consensus       251 ~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~  318 (411)
T 2o0r_A          251 LIAGVRAAKQY-------LSYVGGAPFQPAVALALDTEDAWVAALRNSLRARRDRLAAGLTE-I-GFAVHDSYG---TYF  318 (411)
T ss_dssp             HHHHHHHHHHH-------HTSCCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCCCB---SSE
T ss_pred             HHHHHHHHHhh-------ccCCCChHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHH-c-CCEecCCCe---eEE
Confidence            65555433211       11244455556666677654455788889999999999999998 4 777765321   334


Q ss_pred             EEEEEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          354 LNLSFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       354 ~~~~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      +.+.++.   .+..++...|   +||.+.+|..|.....+|+.++..      ...+++||+++.  +++++++++++|+
T Consensus       319 ~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~------~~~~~iRis~~~--~~e~i~~~~~~l~  390 (411)
T 2o0r_A          319 LCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQAD------VWNHLVRFTFCK--RDDTLDEAIRRLS  390 (411)
T ss_dssp             EEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------C------CGGGCEEEECCS--CHHHHHHHHHHHG
T ss_pred             EEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCcccccccccc------CCCCeEEEEecC--CHHHHHHHHHHHH
Confidence            5566654   3455666654   499999988774432233333221      123789999974  7999999999999


Q ss_pred             HHHHHHHhcCh
Q 040741          428 KQVEKLREMSP  438 (457)
Q Consensus       428 ~~~~~~~~~~~  438 (457)
                      +++++.+..+|
T Consensus       391 ~~~~~~~~~~~  401 (411)
T 2o0r_A          391 VLAERPATGVP  401 (411)
T ss_dssp             GGGC-------
T ss_pred             HHHhccCcCCC
Confidence            98876654443

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=100.00  E-value=2.6e-31  Score=264.05  Aligned_cols=332  Identities=17%  Similarity=0.136  Sum_probs=248.1

Q ss_pred             CcEEecCCCC-C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           57 RPLYLDMQAT-T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        57 ~~i~l~~~~~-~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      .++.|..+.+ + +.++++.+++.+.+.... +... .+.+..+..+...++++.+++++|.+  ++++|+|||+|+.++
T Consensus        44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~v~~~~ggt~a~~~~  119 (398)
T 3a2b_A           44 RVLMFGSNSYLGLTTDTRIIKAAQDALEKYG-TGCA-GSRFLNGTLDIHVELEEKLSAYVGKE--AAILFSTGFQSNLGP  119 (398)
T ss_dssp             EEEECSCSCTTCGGGCHHHHHHHHHHHHHHC-SCCC-SBTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHH
T ss_pred             eEEEeecccccCCCCCHHHHHHHHHHHHHcC-CCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHH
Confidence            3444444433 3 278999999999886532 2111 11111222367889999999999974  699999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC----CceEEEEeccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP----DTGLISVMAVNNEIG  210 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G  210 (457)
                      ++++.    ++|+.|+++.++|+++..+++..   |.+++.++.     +|++++++++++    ++++|++++++||+|
T Consensus       120 ~~~~~----~~gd~V~~~~p~~~~~~~~~~~~---g~~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG  187 (398)
T 3a2b_A          120 LSCLM----GRNDYILLDERDHASIIDGSRLS---FSKVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEG  187 (398)
T ss_dssp             HHHSS----CTTCEEEEETTCCHHHHHHHHHS---SSEEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTC
T ss_pred             HHHHh----CCCCEEEECCccCHHHHHHHHHc---CCceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCC
Confidence            99987    89999999999999998877665   999999986     489999999876    789999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCc---ccCCC-----CcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIP---VDVEK-----WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~~~-----~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      .+.|+++|.++|++||+++|+|++|+.+...   ..+..     .++|+++.|+||.+|+.| |+++++++.++++....
T Consensus       188 ~~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~  266 (398)
T 3a2b_A          188 DIVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLASLG-GFVAGDADVIDFLKHNA  266 (398)
T ss_dssp             CBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTCSSC-EEEEECHHHHHHHHHHC
T ss_pred             CccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccccCCC-cEEEeCHHHHHHHHHhc
Confidence            9999999999999999999999999866431   11111     136999999999999888 99999876655554321


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-c
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-V  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  361 (457)
                      ..+     ...+++++.+.+++..+++.. +.+++..++++++++++.+.|++ + ++.+..+ .   ..++.+.++. .
T Consensus       267 ~~~-----~~~~~~~~~~~a~~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~-~---g~~~~~~~~~~~  334 (398)
T 3a2b_A          267 RSV-----MFSASMTPASVASTLKALEII-QNEPEHIEKLWKNTDYAKAQLLD-H-GFDLGAT-E---SPILPIFIRSNE  334 (398)
T ss_dssp             HHH-----HSSBCCCHHHHHHHHHHHHHH-HHCTHHHHHHHHHHHHHHHHHHH-T-TCCBCSC-C---SSEEEEECCCHH
T ss_pred             ccc-----eecCCCCHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHHHh-c-CCCcCCC-C---CCEEEEEcCCHH
Confidence            100     122355566665666777764 35678899999999999999998 5 6665532 1   3455555542 2


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +..++...|  +||.+.+|..|...                ...+++||+++..++++++++++++|+++++++
T Consensus       335 ~~~~l~~~l~~~gi~v~~~~~~~~~----------------~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~  392 (398)
T 3a2b_A          335 KTFWVTKMLQDDGVFVNPVVSPAVP----------------AEESLIRFSLMATHTYDQIDEAIEKMVKVFKQA  392 (398)
T ss_dssp             HHHHHHHHHHHTTEECEEECTTTSC----------------GGGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCcEEEeeCCCCCC----------------CCCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence            345566665  69999988765321                123799999999899999999999999998765

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=100.00  E-value=2.9e-32  Score=271.58  Aligned_cols=335  Identities=16%  Similarity=0.137  Sum_probs=250.4

Q ss_pred             CcEEecCCCCC--CCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChHH
Q 040741           57 RPLYLDMQATT--PVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~--~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~t~g~T~  129 (457)
                      .++.|..+...  +.++++.+++.+.+.+..  +++.      .....+..+++++++++++|.+  + +++++|+|||+
T Consensus        40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~y~~------~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~  113 (407)
T 3nra_A           40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQAYTE------YRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQG  113 (407)
T ss_dssp             CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHHSCC------TTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred             ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCCcCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHH
Confidence            45777765444  678999999999886421  1111      1123467888999999999974  3 68999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC------CCCCCCCHHHHHHhcCCCceEEEEe
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV------GADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~------~~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      |++++++++.    ++|++|+++.+.|.++...++..   |.+++.++.      +.++.+|++++++++++++++|+++
T Consensus       114 a~~~~~~~l~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~  186 (407)
T 3nra_A          114 ALFLAVAATV----ARGDKVAIVQPDYFANRKLVEFF---EGEMVPVQLDYVSADETRAGLDLTGLEEAFKAGARVFLFS  186 (407)
T ss_dssp             HHHHHHHTTC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHhC----CCCCEEEEcCCcccchHHHHHHc---CCEEEEeecccccccCcCCCcCHHHHHHHHhhCCcEEEEc
Confidence            9999999987    89999999999999988877666   999999998      3667899999999999899999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC-----CCCcccEEEeccccccCCCC--ceEEE
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV-----EKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~-----~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++||+|.+.|   +++|+++|++||+++|+|++|+.+..    ...+     ...+.++++.|++|.+|..|  +|+++
T Consensus       187 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~  266 (407)
T 3nra_A          187 NPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGYRLGVAF  266 (407)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGGCCEEEE
T ss_pred             CCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCeeeEEEEE
Confidence            99999999999   99999999999999999999986322    1111     12456799999999887444  79999


Q ss_pred             EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                      ++++..+.+......       ...+.+.....++..+++...+.+++..++.+++++++.+.|++ ++++.+..+..  
T Consensus       267 ~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~--  336 (407)
T 3nra_A          267 GSRAIIARMEKLQAI-------VSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLRG-CEGVFARTPQA--  336 (407)
T ss_dssp             ECHHHHHHHHHHHHH-------HTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHHT-STTCBCCCCSB--
T ss_pred             cCHHHHHHHHHHHhh-------hccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhc-CCCceeccCCe--
Confidence            887665555443321       11244445555444444322234677888899999999999998 78887754322  


Q ss_pred             ccceEEEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          350 YIGNLNLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       350 ~~~~~~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                       ..++.+.++  ..+..++...|   +||.+.+|..|.+                 ...++|||+++.  ++++|+++++
T Consensus       337 -~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~--~~~~i~~~~~  396 (407)
T 3nra_A          337 -GSYLFPRLPKLAVAPAEFVKILRLQAGVVVTPGTEFSP-----------------HTADSVRLNFSQ--DHEAAVAAAR  396 (407)
T ss_dssp             -SSEECCBCCCBSSCHHHHHHHHHHHHCEECEEGGGTCT-----------------TCTTBEEEECCS--CHHHHHHHHH
T ss_pred             -eEEEEEeCCCCCCCHHHHHHHHHHhCCEEEeCchhhCC-----------------CCCCEEEEEeCC--CHHHHHHHHH
Confidence             233333443  23556676666   3999999887753                 123899999985  8999999999


Q ss_pred             HHHHHHHHHH
Q 040741          425 LTVKQVEKLR  434 (457)
Q Consensus       425 ~l~~~~~~~~  434 (457)
                      +|++++++++
T Consensus       397 ~l~~~~~~~~  406 (407)
T 3nra_A          397 RIVTLVERYR  406 (407)
T ss_dssp             HHHHHHHHHB
T ss_pred             HHHHHHHHhh
Confidence            9999998764

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=100.00  E-value=1.1e-30  Score=256.99  Aligned_cols=338  Identities=14%  Similarity=0.096  Sum_probs=238.4

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh---hhhh
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV---MHFY  142 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~---~~~~  142 (457)
                      .+++++++++++.+.+.+.+.+|           .+...++++.+++++|.+  ++++++|||+|+.++++++   .   
T Consensus         8 ~~~~~~~v~~a~~~~~~~~~~~~-----------~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~~~~~~~~~---   71 (375)
T 2fnu_A            8 EPCLDKEDKKAVLEVLNSKQLTQ-----------GKRSLLFEEALCEFLGVK--HALVFNSATSALLTLYRNFSEFS---   71 (375)
T ss_dssp             CCCCCHHHHHHHHHHHTSSCCSS-----------SHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHSSCCC---
T ss_pred             CCCCCHHHHHHHHHHHHcCcccC-----------ChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHhcccC---
Confidence            56899999999999986533222           146789999999999986  6999999999999999998   5   


Q ss_pred             cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHH
Q 040741          143 KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQIC  222 (457)
Q Consensus       143 ~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~  222 (457)
                       ++|++|+++.++|+++..+++..   |+++++++.+.++.+|++++++++++++++|+++++   +|.+.|+++|.++|
T Consensus        72 -~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~~---tG~~~~l~~i~~l~  144 (375)
T 2fnu_A           72 -ADRNEIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLC  144 (375)
T ss_dssp             -TTSCEEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHH
T ss_pred             -CCCCEEEECCCccHhHHHHHHHC---CCEEEEeccCCCCCCCHHHHHhhcCcCceEEEEeCC---cCCccCHHHHHHHH
Confidence             78999999999999999887765   999999999877789999999999999998888776   89999999999999


Q ss_pred             HhcCCcEEEehhhhcCCCccc--CCCCcccEEEeccc--cccCCCCceEEEEe--cCCCccccccccCCcc---ccccc-
Q 040741          223 KEFKIPFHTDAAQALGKIPVD--VEKWNVSLMSLSGH--KIYGPKGVGALYMR--RRPRIRVEPLINGGGQ---ERGIR-  292 (457)
Q Consensus       223 ~~~~v~li~D~a~~~g~~~~~--~~~~~~Di~~~s~~--K~~g~~G~G~l~~~--~~~~~~~~~~~~~~~~---~~~~~-  292 (457)
                      ++||+++|+|++|+.+..+..  +..++ |+.+.|++  |++|+ |+|+++++  ++..+++.+...++..   ...+. 
T Consensus       145 ~~~~~~li~D~a~~~~~~~~~~~~~~~~-~i~~~s~s~~K~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (375)
T 2fnu_A          145 KKHSLSFLSDSSHALGSEYQNKKVGGFA-LASVFSFHAIKPITT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEV  222 (375)
T ss_dssp             HHHTCEEEEECTTCTTCEETTEETTSSS-SEEEEECCTTSSSCC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEE
T ss_pred             HHcCCEEEEECccccCCeECCeeccccC-CeEEEeCCCCCCccc-cCceEEEeCCHHHHHHHHHHHhcCCcccccccccc
Confidence            999999999999998865432  33222 55555555  98888 88999885  3344455444332220   00010 


Q ss_pred             --cCCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC--CCcccceEEEEEcc--c-cch
Q 040741          293 --SGTL-PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM--ERRYIGNLNLSFAY--V-EGE  364 (457)
Q Consensus       293 --~~t~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~  364 (457)
                        .+.. ....+.+.. ++. ..+.+++..++.+++++++.+.|.+ ++++.+..++  ....+..+.+.++.  . +..
T Consensus       223 ~~~~~~~~~~~~~~a~-~~~-~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (375)
T 2fnu_A          223 KSIGHNFRLNEIQSAL-GLS-QLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKK  299 (375)
T ss_dssp             SSCCCBCCCCHHHHHH-HHH-HHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHH
T ss_pred             ccccccCCCCHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHhhc-CCCccccCCCCCCCcceEEEEEEeCccccchHH
Confidence              1111 111221111 111 1245788889999999999999999 8899887642  11223334555653  2 456


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcC---C--CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALG---V--DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g---~--~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++...|  +||.+..  .|.+....+.+.. .+.   .  ......+.|||+++..++++|+++++++|++++++++
T Consensus       300 ~l~~~L~~~gi~v~~--~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~~  373 (375)
T 2fnu_A          300 LILESLHKRGILAQV--HYKPIYQYQLYQQ-LFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFESFK  373 (375)
T ss_dssp             HHHHHHHHTTEECBC--CCCCGGGSHHHHH-HHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCCccc--cccccccchhhhc-CCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            666666  6888773  3433211111110 000   0  0011236899999999999999999999999987653

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=100.00  E-value=4.1e-31  Score=262.83  Aligned_cols=332  Identities=16%  Similarity=0.168  Sum_probs=248.8

Q ss_pred             CcEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      +..|+|+.++.+    .++++.+++.+.+.. ++++.+ .+.+.+...+...++++.+++++|++  +.+++++||+|+.
T Consensus        44 g~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGs~a~~  119 (401)
T 1fc4_A           44 GSHVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMA-SVRFICGTQDSHKELEQKLAAFLGME--DAILYSSCFDANG  119 (401)
T ss_dssp             SCEEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCC-SCHHHHCCBHHHHHHHHHHHHHHTCS--EEEEESCHHHHHH
T ss_pred             CccEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCC-CCCcccCCcHHHHHHHHHHHHHhCCC--cEEEeCChHHHHH
Confidence            345667666553    389999999998865 333222 22333222467889999999999987  4566677899999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEeccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVN  206 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~  206 (457)
                      .+++++.    ++|+.|+++.++|++...+++   ..|.+++.++.     .|++++++++++      ++++|++++++
T Consensus       120 ~~~~~~~----~~gd~v~~~~~~~~~~~~~~~---~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~  187 (401)
T 1fc4_A          120 GLFETLL----GAEDAIISDALNHASIIDGVR---LCKAKRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVF  187 (401)
T ss_dssp             TTHHHHC----CTTCEEEEETTCCHHHHHHHH---TSCSEEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred             HHHHHHc----CCCCEEEEcchhHHHHHHHHH---HcCCceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence            9999887    899999999999998877654   44999988873     389999998875      78999999999


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCC-c--------ccCCCCcccEEEecccccc-CCCCceEEEEecCCCc
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-P--------VDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRI  276 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~--------~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~  276 (457)
                      ||+|.+.|+++|.++|++||+++|+|++|+.+.. +        .++.. +.|+++.|+||.+ |+.| |+++++++.++
T Consensus       188 nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~-~~di~~~s~sK~~~~~~g-G~~~~~~~~~~  265 (401)
T 1fc4_A          188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMG-RVDIITGTLGKALGGASG-GYTAARKEVVE  265 (401)
T ss_dssp             TTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTT-CCSEEEEESSSTTCSSSC-EEEEECHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCc-CCcEEEecchhhccCCCC-EEEEcCHHHHH
Confidence            9999999999999999999999999999975543 2        23322 5799999999976 7776 99999876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++......+     ...++.+...++++.++++.... .++..++++++++++.+.|++ + ++.+..    ....++.+
T Consensus       266 ~l~~~~~~~-----~~~~~~~~~~~~a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~----~~~~~~~~  333 (401)
T 1fc4_A          266 WLRQRSRPY-----LFSNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA-A-GFTLAG----ADHAIIPV  333 (401)
T ss_dssp             HHHHHCHHH-----HHSCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH-T-TCCBCC----SSSSEEEE
T ss_pred             HHHHhCcCc-----eeCCCCCHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH-c-CCcccC----CCCCEEEE
Confidence            554322110     11346777788877778876643 578888999999999999998 5 666542    12455556


Q ss_pred             EEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          357 SFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       357 ~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .++. .+..++...|  +||.+.+|..|...                ...+++||+++..++++|+++++++|+++++++
T Consensus       334 ~~~~~~~~~~l~~~l~~~gi~v~~~~~~~~~----------------~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  397 (401)
T 1fc4_A          334 MLGDAVVAQKFARELQKEGIYVTGFFYPVVP----------------KGQARIRTQMSAAHTPEQITRAVEAFTRIGKQL  397 (401)
T ss_dssp             EEECHHHHHHHHHHHHHTTEECCEECTTSSC----------------TTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             EcCChHHHHHHHHHHHHCCcEEeeecCCCCC----------------CCCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence            6653 2345566655  69999887654321                123689999999899999999999999998876


Q ss_pred             H
Q 040741          434 R  434 (457)
Q Consensus       434 ~  434 (457)
                      +
T Consensus       398 ~  398 (401)
T 1fc4_A          398 G  398 (401)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=100.00  E-value=1.1e-32  Score=278.84  Aligned_cols=341  Identities=13%  Similarity=0.067  Sum_probs=242.0

Q ss_pred             cccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCC-------c--cchhhhHHHHHHHHHHHHHHHhCCCCCc
Q 040741           50 KGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR-------T--HLFGWESEVAVETARSQIADLIGASPKE  120 (457)
Q Consensus        50 ~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~-------~--~~~~~~~~~~~~~~~~~la~~~g~~~~~  120 (457)
                      +........+|||++++++.+++|+++|.......+.++..+       .  +..+....+..+++++++++++|++++ 
T Consensus        73 ~~~~~~~~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-  151 (456)
T 2z67_A           73 KFLSMMDTDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYALTNKILESFFKQLGLNVH-  151 (456)
T ss_dssp             HHHHTTBGGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHHHHHHHHHHHHHTTCCCE-
T ss_pred             HHHHhccccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHHHHHHHHHHHHHcCCCCC-
Confidence            444445567899999999999999999888542222222110       0  011113456788899999999999876 


Q ss_pred             EEEeCChH-HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC---CCCCCCCHHHHHHhc-C-
Q 040741          121 IIFTSGAT-ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV---GADGIVNLDELRAAI-R-  194 (457)
Q Consensus       121 i~~t~g~T-~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~---~~~~~~d~~~le~~i-~-  194 (457)
                      ++||+||| .++.+++.++..+  .++++|+++..+|+++..+++..   |++++.++.   +.++.+|+++|+++| + 
T Consensus       152 ~~~t~g~te~a~~~al~~~~~~--~~~~~vi~~~~~h~s~~~~~~~~---G~~~~~v~~~~~~~~~~~d~~~l~~~i~~~  226 (456)
T 2z67_A          152 AIATPISTGMSISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLDGDRVYVPVEDIENAIKKE  226 (456)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEETTEEECCHHHHHHHHHHH
T ss_pred             EEEeCcHHHHHHHHHHHHHHHh--cCCCEEEEECCCcHHHHHHHHHc---CCCceEEEEeccCCCCCcCHHHHHHHHHHH
Confidence            99999999 5666577765421  16788998999999998887765   999999886   567889999999999 4 


Q ss_pred             ---CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCC--cccEEEecccc-ccCCCCc
Q 040741          195 ---PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKW--NVSLMSLSGHK-IYGPKGV  265 (457)
Q Consensus       195 ---~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~--~~Di~~~s~~K-~~g~~G~  265 (457)
                         .++.+|+++.++|++|.+.|+++|.++|+++|+++|+|+||+....   +.+....  ++|++++|+|| +++|.|+
T Consensus       227 ~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~~~~D~~~~s~hK~~~~p~g~  306 (456)
T 2z67_A          227 IELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG  306 (456)
T ss_dssp             HHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSCCSEEEEEHHHHHCCCSSC
T ss_pred             hhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhCCCCCEEEEcCCCCcCCCCCe
Confidence               4677888899999999999999999999999999999988774432   3332222  68999999999 4678899


Q ss_pred             eEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCC---Ce
Q 040741          266 GALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLD---GV  340 (457)
Q Consensus       266 G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~  340 (457)
                      |+++++ ++.+.++.+...|+.      .    .....++.+++..+ .++++++.++..++++++.+.|.+ ++   ++
T Consensus       307 G~l~~~~~~~~~~l~~~~~g~~------~----~~~~~~~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~  375 (456)
T 2z67_A          307 GLVYSTDAEFIKEISLSYPGRA------S----ATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLND-LSKKTGG  375 (456)
T ss_dssp             EEEEESCHHHHHHHHTTSCSCB------C----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSC
T ss_pred             EEEEEcCHHHHhhcCcCCCCCC------C----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccCC
Confidence            999995 444455544443321      1    11233344455444 346889999999999999999988 65   66


Q ss_pred             EEeCCCCCcccceEEEEE--ccccchHHHhcc--cCe---Eec------ccCccCCCCCChhHHHHHcCCCccCCCCeEE
Q 040741          341 VVNGSMERRYIGNLNLSF--AYVEGESLLMGL--KEV---AVS------SGSACTSASLEPSYVLRALGVDEDMAHTSIR  407 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l--~~i---~~~------~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iR  407 (457)
                      .+..+.     +.+.+.+  +.. ..++...|  +++   .+.      .|..|..                 ..++++|
T Consensus       376 ~v~~~~-----~~v~~~~~~~~~-~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~-----------------~~~~~vr  432 (456)
T 2z67_A          376 KFLDVE-----SPIASCISVNSD-PVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT-----------------YTHDYIV  432 (456)
T ss_dssp             CBCCCC-----CSSEEEEECSSC-HHHHHHHHHHTTEESCEEECTTCHHHHTCSSC-----------------CSCCEEE
T ss_pred             EecCCC-----CeEEEEEecccH-HHHHHHHHHHcCCCcceEEeecCccccccccc-----------------cCcchhh
Confidence            665532     3334454  321 24555555  343   222      1222211                 1237999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHH
Q 040741          408 FGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       408 i~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ++++.++|++|||+++++|++++
T Consensus       433 ~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          433 MNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTC-
T ss_pred             hhhhcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999998754

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-31  Score=269.38  Aligned_cols=337  Identities=17%  Similarity=0.162  Sum_probs=254.2

Q ss_pred             CCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHHHHHHHhhhhhc-C
Q 040741           69 VDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNNVSIKGVMHFYK-D  144 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~~al~~~~~~~~-~  144 (457)
                      .++.+.+++.+.+..... ++..  +.......+...++++++++++|++  ++++++++|||+|+.+++++++.... .
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~  153 (497)
T 3mc6_A           76 GGDDLIHLQTIAYEKYCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHH  153 (497)
T ss_dssp             CCHHHHHHHHHHHHHTSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhc
Confidence            347788888887765322 3222  1112234467778999999999997  66899999999999999999874211 1


Q ss_pred             CC---CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741          145 KK---RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ  220 (457)
Q Consensus       145 ~g---~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~  220 (457)
                      +|   ++|+++.+.|+++..+++.+   |++++.++.+. ++.+|+++|+++|++++++|++++++|++|.+.|+++|.+
T Consensus       154 ~g~~~~~Vi~~~~~h~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~p~nptG~~~~l~~i~~  230 (497)
T 3mc6_A          154 RGITEPEIIAPVTAHAGFDKAAYYF---GMKLRHVELDPTTYQVDLGKVKKFINKNTVLLVGSAPNFPHGIADDIEGLGK  230 (497)
T ss_dssp             SCCSSCEEEEETTSCHHHHHHHHHS---CCEEEEECBCTTTCSBCTTTTGGGCCSSEEEEEEETTCTTTCCCCSCTTTTT
T ss_pred             CCCCCceEEEeCCccHHHHHHHHHc---CCeEEEEecCcccCcCCHHHHHHHHhhCCEEEEEECCCCCCCcCCCHHHHHH
Confidence            34   89999999999999888776   99999999987 7899999999999999999999999999999999999999


Q ss_pred             HHHhcCCcEEEehhhhcCC-----------C-cccCCCCcccEEEeccccc-cCCCCceEEEEecCCCcccc----cccc
Q 040741          221 ICKEFKIPFHTDAAQALGK-----------I-PVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVE----PLIN  283 (457)
Q Consensus       221 l~~~~~v~li~D~a~~~g~-----------~-~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~----~~~~  283 (457)
                      +|++||+++|+|++|+.+.           . +++....++|++++|+||+ +|+.|+|+++++++......    +...
T Consensus       231 la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~  310 (497)
T 3mc6_A          231 IAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPAWT  310 (497)
T ss_dssp             HHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTTCT
T ss_pred             HHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccccc
Confidence            9999999999999997332           2 3555566899999999995 68889999999875433221    1111


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE  362 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (457)
                      ++........++.+...++++.+++..+.. ++++..++..++++++.+.|.+.++++.+++++   ..+++.+...+.+
T Consensus       311 ~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~~---~~~~v~~~~~~~~  387 (497)
T 3mc6_A          311 GGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGNP---RYSVISFSSKTLN  387 (497)
T ss_dssp             TSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSCC---CSSEEEEECTTTT
T ss_pred             CCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCC---CeeEEEEeCCCCC
Confidence            211111122344455556667777776554 578899999999999999999834899887653   2455556655556


Q ss_pred             chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          363 GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       363 ~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      ..++...|  +||.+..+..                      ...+|++++ .++++|+++++++|+++++++++.
T Consensus       388 ~~~l~~~L~~~Gi~v~~~~~----------------------~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~~~  440 (497)
T 3mc6_A          388 IHELSDRLSKKGWHFNALQK----------------------PVALHMAFT-RLSAHVVDEICDILRTTVQELKSE  440 (497)
T ss_dssp             HHHHHHHHHTTTCBCEECCS----------------------SCCEEEECC-TTTTCTHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCEEEecCCC----------------------CCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHHhC
Confidence            67777777  5776654321                      146899998 678999999999999999887643

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=100.00  E-value=9e-31  Score=254.02  Aligned_cols=315  Identities=16%  Similarity=0.154  Sum_probs=238.4

Q ss_pred             cCCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           54 IAGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        54 ~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      ...+.|+|+.+.+. ++++++.+++.+.......+|           .....++++.+++++|++++++++|+|+|++++
T Consensus        14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~   82 (337)
T 3p1t_A           14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAARINRYP-----------FDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFD   82 (337)
T ss_dssp             CCCCCEECSSCCCCSCCCHHHHHHHHHHGGGTTSCC-----------TTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHH
T ss_pred             CCCCceEeeCCCCCCCCCHHHHHHHHHhhhhhccCC-----------CCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHH
Confidence            34677999998655 788999999999876532222           136788999999999998889999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      +++.++      +|++|++..+.|.++...++.   .|.+++.++.+.++.+|+++++++  .+++++++++++||+|.+
T Consensus        83 ~~~~~~------~gd~vl~~~p~~~~~~~~~~~---~g~~~~~v~~~~~~~~d~~~l~~~--~~~~~v~i~~p~nptG~~  151 (337)
T 3p1t_A           83 RISAEF------SSMRFVTAWPGFDGYRARIAV---SGLRHFEIGLTDDLLLDPNDLAQV--SRDDCVVLANPSNPTGQA  151 (337)
T ss_dssp             HHHHHS------TTSEEEEESSSCSHHHHHHTT---SCCEEEEECBCTTSSBCHHHHTTC--CTTEEEEEESSCTTTCCC
T ss_pred             HHHHhc------CCCeEEEeCCCcHHHHHHHHH---cCCEEEEecCCCCCCCCHHHHHhh--cCCCEEEEeCCCCCCCCC
Confidence            988875      689999999999998876554   499999999988888999999887  578999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhc-C-CCcccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccc
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQAL-G-KIPVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQE  288 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~-g-~~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~  288 (457)
                      .|++++.++|+++++ +++|++|+. + .........+.++++.|++|.+|++|  +|+++++++..+++....      
T Consensus       152 ~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~r~G~~~~~~~~~~~l~~~~------  224 (337)
T 3p1t_A          152 LSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLAYGENELVFRSFSKSYGLAGLRLGALFGPSELIAAMKRKQ------  224 (337)
T ss_dssp             CCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCCCBTTEEEEEESSSTTCCTTTCCEEEECCHHHHHHHHTTS------
T ss_pred             CCHHHHHHHHHhCCc-EEEECCChhhccccccccccCCCEEEEeeCchhccCcchheEEEEeCHHHHHHHHhhc------
Confidence            999999999999997 566999873 2 11222223356899999999887554  699998876655554322      


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHh
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLM  368 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  368 (457)
                         ..++++...+.++..+++.. +.+.+..++..++++++.+.|++ + ++.+..+.    .+++.  +...++..+..
T Consensus       225 ---~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~--~~~~~~~~~~~  292 (337)
T 3p1t_A          225 ---WFCNVGTLDLHALEAALDND-RAREAHIAKTLAQRRRVADALRG-L-GYRVASSE----ANFVL--VENAAGERTLR  292 (337)
T ss_dssp             ---CTTCSCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHH-T-TCCBCCCS----SSEEE--EECTTTHHHHH
T ss_pred             ---CCCCCCHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHH-C-cCEECCCC----CeEEE--EEcCCHHHHHH
Confidence               12356666666666665532 23566777778888999999998 5 66654321    23333  33344555655


Q ss_pred             cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          369 GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       369 ~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .|  +||.+.+|..|..                   .+++||+++   +++|+++++++|+++.+
T Consensus       293 ~l~~~gi~v~~g~~~~~-------------------~~~iRis~~---~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          293 FLRERGIQVKDAGQFGL-------------------HHHIRISIG---REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             HHHHTTEECEEGGGGTC-------------------CSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCeEEEECccCCC-------------------CCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence            55  6999999886642                   279999987   58999999999987653

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=100.00  E-value=1.3e-31  Score=267.08  Aligned_cols=332  Identities=16%  Similarity=0.177  Sum_probs=245.2

Q ss_pred             CCCcEEecCCCC---C-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEe
Q 040741           55 AGRPLYLDMQAT---T-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFT  124 (457)
Q Consensus        55 ~~~~i~l~~~~~---~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t  124 (457)
                      ..+.++|+.+.+   . +.++++.+++.+.+.... .      .|+.  .....++++.+++++      +++++++++|
T Consensus        37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~--~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t  107 (406)
T 1xi9_A           37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-N------YYGD--SEGLPELRKAIVEREKRKNGVDITPDDVRVT  107 (406)
T ss_dssp             TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-C------SCCC--TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEE
T ss_pred             CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-C------CCCC--CCCcHHHHHHHHHHHHHhcCCCCCHHHEEEc
Confidence            456789988877   3 567899999999886421 0      0111  012345666666665      4567789999


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEE
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISV  202 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i  202 (457)
                      +|||+|+.++++++.    ++|++|+++.++|+++...++..   |.+++.++.+.  ++.+|+++|++++++++++|++
T Consensus       108 ~g~~~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~i  180 (406)
T 1xi9_A          108 AAVTEALQLIFGALL----DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAV  180 (406)
T ss_dssp             SHHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEE
T ss_pred             CChHHHHHHHHHHhC----CCCCEEEEcCCCCccHHHHHHHc---CCEEEEeecCCCcCCcCCHHHHHHhhCcCceEEEE
Confidence            999999999999987    89999999999999988777655   99999998874  4568999999999999999999


Q ss_pred             eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC--Ccc-cEEEeccccccCCCC--ceEEE--
Q 040741          203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK--WNV-SLMSLSGHKIYGPKG--VGALY--  269 (457)
Q Consensus       203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~--~~~-Di~~~s~~K~~g~~G--~G~l~--  269 (457)
                      ++++||+|.+.|   +++|.++|++||+++|+|++|+.+..   ...+..  .+. |+++.|++|.+|++|  +|+++  
T Consensus       181 ~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  260 (406)
T 1xi9_A          181 INPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFV  260 (406)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEE
T ss_pred             ECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcCCCceEEEEeccccccCCCccEEEEEEEe
Confidence            999999999987   89999999999999999999986532   111111  345 889999999888666  89999  


Q ss_pred             Eec----CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          270 MRR----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       270 ~~~----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      .++    +..+++.....       .. .+++.....++.++++...+.+++..++++++++++.+.|++ +|++.+..+
T Consensus       261 ~~~~~~~~l~~~l~~~~~-------~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~  331 (406)
T 1xi9_A          261 DPENKLSEVREAIDRLAR-------IR-LCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKP  331 (406)
T ss_dssp             CTTCTTHHHHHHHHHHHH-------HT-CCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCC
T ss_pred             cCchhHHHHHHHHHHHHH-------hh-cCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHh-CCCCeeecC
Confidence            665    44444433221       11 355666666666676533334778888999999999999998 788877643


Q ss_pred             CCCcccceEEEEEc---cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          346 MERRYIGNLNLSFA---YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       346 ~~~~~~~~~~~~~~---~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      ..   +.++.+.++   +.+..++...+   +||.+.+|..|..                 ...+++||+++  ++++++
T Consensus       332 ~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~lRis~~--~~~~~i  389 (406)
T 1xi9_A          332 QG---AFYIFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEIL  389 (406)
T ss_dssp             CB---SSEECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHH
T ss_pred             Ce---eEEEEEecCccCCCCHHHHHHHHHHhCCEEEeCchhcCC-----------------CCCCEEEEEec--CCHHHH
Confidence            21   223333454   24556666554   4899988875531                 12379999998  789999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      ++++++|+++++++
T Consensus       390 ~~~~~~l~~~l~~~  403 (406)
T 1xi9_A          390 EEAMDRFEKFMKER  403 (406)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=100.00  E-value=8.1e-31  Score=268.08  Aligned_cols=348  Identities=15%  Similarity=0.139  Sum_probs=243.4

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~  133 (457)
                      ..++.||++..+++.++.+++++.....+    +....+...........++++++++++|+++ ++++||+|||+|+++
T Consensus        98 ~~~~~yl~~~~~~~~~~~v~~~~~~~~~n----~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~  173 (497)
T 2qma_A           98 TQHPDCIAHLHTPPLMPAVAAEAMIAALN----QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQM  173 (497)
T ss_dssp             TTSTTBCSSSCCCCBHHHHHHHHHHHHHC----CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHH
T ss_pred             CCCCCeeEeCCCCCcHHHHHHHHHHHhhc----ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHH
Confidence            45678999999999999999999877653    2222222233444566667899999999975 679999999999999


Q ss_pred             HHHHhhhhhc---------CC------CC-EEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCCC
Q 040741          134 SIKGVMHFYK---------DK------KR-HVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRPD  196 (457)
Q Consensus       134 al~~~~~~~~---------~~------g~-~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~~  196 (457)
                      ++.++...+.         .+      ++ .|+++...|.++..+++.+.. |. +++.+|.+.++.+|+++|+++|+++
T Consensus       174 al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~  252 (497)
T 2qma_A          174 GLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGL-GEKAVMTVDANADGTMDITKLDEVIAQA  252 (497)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSSBCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCC-CcccEEEEecCCCCcCCHHHHHHHHHHH
Confidence            9998542211         11      35 899999999999998887622 33 8999999888999999999999754


Q ss_pred             ----c--eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc----CCCC-cccEEEecccc-ccCCCC
Q 040741          197 ----T--GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD----VEKW-NVSLMSLSGHK-IYGPKG  264 (457)
Q Consensus       197 ----t--~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~----~~~~-~~Di~~~s~~K-~~g~~G  264 (457)
                          +  .+|++++++|++|.+.|+++|+++|++||+++|+|+||+.+..+.+    +... ++|++++|+|| +++|.|
T Consensus       253 ~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~  332 (497)
T 2qma_A          253 KAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTIS  332 (497)
T ss_dssp             HHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSS
T ss_pred             HHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcc
Confidence                3  4888999999999999999999999999999999999998776544    2233 67999999999 566888


Q ss_pred             ceEEEEecCCCccccccccCCccccccccCCCChh----------HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHH
Q 040741          265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTP----------LIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~----------~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +|+++++++..  +.+......+-.......++..          ...++..+++.+ .++++++.++..++++++.+.|
T Consensus       333 ~G~l~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L  410 (497)
T 2qma_A          333 CGALLVNDKSN--FKFLLHHADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMI  410 (497)
T ss_dssp             CEEEEESCGGG--GGGGCC--------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCHHH--HHHhcCCchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999987532  1111111100000000001110          112233344433 3457888999999999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEcccc--ch----HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCe
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE--GE----SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTS  405 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~  405 (457)
                      ++ +++++++.++.   .+++.|.+....  ..    .+...+  +|+.+.++.                   ...+.+.
T Consensus       411 ~~-~~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~l~~~l~~~G~~~~~~~-------------------~~~g~~~  467 (497)
T 2qma_A          411 RT-NDQFELLAEPS---LSTVLFRATHETADLDELNKALRLEALTRGIAVLGET-------------------IVDGKTA  467 (497)
T ss_dssp             HT-CTTEEECSCCS---SSEEEEEECCSSSCHHHHHHHHHHHHHHHTSCBCEEE-------------------EETTEEE
T ss_pred             hh-CCCeEEEcCCC---ceEEEEEEcCCccCHHHHHHHHHHHHHhCCCEEEEee-------------------EECCEEE
Confidence            99 88999876543   456666664321  11    222323  344332211                   0112368


Q ss_pred             EEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741          406 IRFGI-GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       406 iRi~~-~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +||++ +..++++||++++++|++++++
T Consensus       468 lRis~~~~~~t~edi~~~~~~l~~~~~~  495 (497)
T 2qma_A          468 LKFTILNPCLTTSDFESLLSKINMLAVE  495 (497)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence            99998 8889999999999999998775

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=100.00  E-value=8.6e-31  Score=256.65  Aligned_cols=319  Identities=11%  Similarity=0.097  Sum_probs=244.6

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      ..++|+|+.+.+. ++++++.+++.+.+.....+|..           ...++++.++++++++++++++|+|+|+|+++
T Consensus        25 ~~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~   93 (361)
T 3ftb_A           25 GRELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDIGIVLGNGASEIIEL   93 (361)
T ss_dssp             ---CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSCEEEEESSHHHHHHH
T ss_pred             CCCEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcceEEEcCCHHHHHHH
Confidence            4566777776544 57899999999998765444332           34689999999999988899999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      +++++        ++|++..+.|.++...++..   |.+++.++.+.++.+|++++++++++ +++|++++++||+|.+.
T Consensus        94 ~~~~~--------d~vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~i~~p~nptG~~~  161 (361)
T 3ftb_A           94 SISLF--------EKILIIVPSYAEYEINAKKH---GVSVVFSYLDENMCIDYEDIISKIDD-VDSVIIGNPNNPNGGLI  161 (361)
T ss_dssp             HHTTC--------SEEEEEESCCTHHHHHHHHT---TCEEEEEECCTTSCCCHHHHHHHTTT-CSEEEEETTBTTTTBCC
T ss_pred             HHHHc--------CcEEEecCChHHHHHHHHHc---CCeEEEeecCcccCCCHHHHHHhccC-CCEEEEeCCCCCCCCCC
Confidence            88865        89999999999988877665   99999999998878899999999998 99999999999999998


Q ss_pred             C---hHHHHHHHHhcCCcEEEehhhhcCCCc-----cc-CCCCcccEEEeccccccCCCC--ceEEE-EecCCCcccccc
Q 040741          214 P---MEEIGQICKEFKIPFHTDAAQALGKIP-----VD-VEKWNVSLMSLSGHKIYGPKG--VGALY-MRRRPRIRVEPL  281 (457)
Q Consensus       214 ~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~-~~~~~~~~~~~~  281 (457)
                      |   +++|+++|++||+++|+|++|+.....     .. ....+.++++.|++|.+|.+|  +|+++ .+++..+++...
T Consensus       162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~~~~~~~~~~~~~~~~  241 (361)
T 3ftb_A          162 NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGYGITNNKEIAAKIKAK  241 (361)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEEEEESCHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeEEEeCCHHHHHHHHhh
Confidence            7   667888888999999999999854331     11 112234578889999877544  78888 555544444332


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCCCCcccceEEEEEcc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~  360 (457)
                      ..         ..+++...+.++.++++. .+.+++..++.+++++++.+.|++ ++++. +..+.    .+++.+.++.
T Consensus       242 ~~---------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~----~~~~~~~~~~  306 (361)
T 3ftb_A          242 QN---------PWNINCFAEMAAINCLKD-TNYIEESLLWIKKERKRFIEELNK-IGFIKRVFSPH----ANFVLCRLEN  306 (361)
T ss_dssp             SC---------TTCSCHHHHHHHHHTSSC-HHHHHHHHHHHHHHHHHHHHHHHH-SSSEEEEECCS----SSEEEEEESS
T ss_pred             CC---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh-CCCCceecCCC----CeEEEEEcCC
Confidence            21         236777777777777764 345788899999999999999998 88887 65432    3455666665


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .+..++...|  +||.+.+|..|..                 ...+++||+++   +.++++++++.|++..+
T Consensus       307 ~~~~~l~~~l~~~gi~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          307 ISGEKLYDSLLKEDIVIRRCCNFIG-----------------LDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             SCHHHHHHHHHTTTEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCeEEeeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence            5666777766  6999998876642                 12389999987   68899999998887765

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=100.00  E-value=1.1e-31  Score=262.51  Aligned_cols=325  Identities=18%  Similarity=0.239  Sum_probs=239.2

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      ..+||+++.++++++++.+++.+.+..+ ..        +....+..+++++++++++|.+++++++|+|||+|++++++
T Consensus        14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~-~~--------~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~   84 (359)
T 1svv_A           14 KPYSFVNDYSVGMHPKILDLMARDNMTQ-HA--------GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACS   84 (359)
T ss_dssp             -CEECSCSCSSCCCHHHHHHHHHHTTCC-CC--------STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHH
T ss_pred             eeEEecCCCcCCCCHHHHHHHHHHHhhc-cc--------cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHH
Confidence            4799999888899999999999987531 11        11223678899999999999988889999999999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC-------ceEEEEecccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD-------TGLISVMAVNNEI  209 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~-------t~li~i~~~~~~~  209 (457)
                      ++.    ++|++|+++.+.|+++..+ ..+...|.+++.++.+ ++.+|+++++++++++       +++|+++++ ||+
T Consensus        85 ~~~----~~gd~vl~~~~~~~~~~~~-~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~pt  157 (359)
T 1svv_A           85 LAL----RPWEAVIATQLGHISTHET-GAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNT-TEV  157 (359)
T ss_dssp             HHC----CTTEEEEEETTSHHHHSST-THHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTT
T ss_pred             HHh----CCCCEEEEcccchHHHHHH-HHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCC
Confidence            987    7999999999999988774 1234459999999986 6789999999999765       899999998 789


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhh---hcCCCcccCCC----CcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQ---ALGKIPVDVEK----WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~---~~g~~~~~~~~----~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      |.+.|   +++|.++|++||+++|+|++|   +.+..+.+...    ...|++++|++|++++.|+|+++++++..+++.
T Consensus       158 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g~~~~~g~l~~~~~~~~~~~  237 (359)
T 1svv_A          158 GTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNAR  237 (359)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHH
T ss_pred             ceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCCCCCceEEEEEcccHHHHHH
Confidence            99999   889999999999999999999   65665544332    357999999999888888999999888777765


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      +....++.    .. ..+.....++..+++  ..++++..++++++++++.+.| + .+++.+.++..   ..++.+.++
T Consensus       238 ~~~~~~~~----~~-~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~l~~~L-~-~~~~~~~~~~~---~~~~~~~~~  305 (359)
T 1svv_A          238 HLIKQRGA----LM-AKGWLLGIQFEVLMK--DNLFFELGAHSNKMAAILKAGL-E-ACGIRLAWPSA---SNQLFPILE  305 (359)
T ss_dssp             HHHHHTTC----CC-TTTHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHH-H-HTTCCBSSCCS---SSEECBEEE
T ss_pred             HHHhcCCc----cc-ccchhhHHHHHHHHh--hhhHHHHHHHHHHHHHHHHHHh-c-cCCeEEccCCc---cceEEEEcC
Confidence            54221111    00 112222233322221  1246778889999999999999 5 47877765422   233333332


Q ss_pred             cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       360 ~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                          .++...|  + ||.+.+..                    ....++|||+++..++++|+++++++|+++++++
T Consensus       306 ----~~~~~~l~~~~gi~v~~~~--------------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  358 (359)
T 1svv_A          306 ----NTMIAELNNDFDMYTVEPL--------------------KDGTCIMRLCTSWATEEKECHRFVEVLKRLVAST  358 (359)
T ss_dssp             ----HHHHHHHTTTEECEEEEEE--------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHHC----
T ss_pred             ----HHHHHHHHHhcCEEEEecc--------------------cCCCceEEEEccCcCCHHHHHHHHHHHHHHHhcc
Confidence                3555555  4 77662100                    0123799999998899999999999999887653

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.9e-31  Score=265.26  Aligned_cols=341  Identities=11%  Similarity=0.054  Sum_probs=252.2

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeC
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTS  125 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~  125 (457)
                      +.+.++|+.+.+. +.++++.+++.+.+...  .+++..          ....++++.++++++      ++++++++|+
T Consensus        43 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~  112 (437)
T 3g0t_A           43 GTKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL----------DGLPELKQEASRFAKLFVNIDIPARACVPTV  112 (437)
T ss_dssp             TCCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT----------TCCHHHHHHHHHHHHHHHCCCCCGGGEEEES
T ss_pred             CCCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC----------CChHHHHHHHHHHHHHhhCCCCCcccEEEeC
Confidence            3567888877766 56899999999988741  111111          123566777777776      5677899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCC--EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhc-CCCceEEE
Q 040741          126 GATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAI-RPDTGLIS  201 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i-~~~t~li~  201 (457)
                      |+|+|++++++++...  ++|+  +|+++.+.|.++...++..   |++++.++.+ .++.+|++++++++ ++++++|+
T Consensus       113 g~t~al~~~~~~l~~~--~~gd~~~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~  187 (437)
T 3g0t_A          113 GSMQGCFVSFLVANRT--HKNREYGTLFIDPGFNLNKLQCRIL---GQKFESFDLFEYRGEKLREKLESYLQTGQFCSII  187 (437)
T ss_dssp             HHHHHHHHHHHHHTTS--CTTCSCCEEEEESCCHHHHHHHHHH---TCCCEEEEGGGGCTTHHHHHHHHHHTTTCCCEEE
T ss_pred             CHHHHHHHHHHHHhcC--CCCCccEEEEeCCCcHhHHHHHHHc---CCEEEEEeecCCCCccCHHHHHHHHhcCCceEEE
Confidence            9999999999988511  4788  9999999999998887776   9999999986 34468999999999 78899999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc--------cCCC-CcccEEEeccccccCCCC-
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV--------DVEK-WNVSLMSLSGHKIYGPKG-  264 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~--------~~~~-~~~Di~~~s~~K~~g~~G-  264 (457)
                      +++++||+|.+.|   +++|+++|++||+++|+|++|+....    ++        .+.. .+.++++.|+||.+|++| 
T Consensus       188 l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~  267 (437)
T 3g0t_A          188 YSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ  267 (437)
T ss_dssp             EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG
T ss_pred             EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc
Confidence            9999999999998   67789999999999999999985322    21        2222 466799999999888555 


Q ss_pred             -ceEEEEecCCCc-ccccccc---C-------CccccccccCCCChhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHH
Q 040741          265 -VGALYMRRRPRI-RVEPLIN---G-------GGQERGIRSGTLPTPLIVGFGSACEIAKKE---MDYDHKRITALHDRL  329 (457)
Q Consensus       265 -~G~l~~~~~~~~-~~~~~~~---~-------~~~~~~~~~~t~~~~~~~al~~al~~~~~~---~~~~~~~~~~~~~~l  329 (457)
                       +|+++++++..+ .+.....   +       ..........+++.....++..+++.....   +++..++++++++++
T Consensus       268 r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l  347 (437)
T 3g0t_A          268 RIGVLMISGKLYEREYPDLEESFGRLRFGEALSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIM  347 (437)
T ss_dssp             CCEEEEECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECHHHhhhhhhcccccccccchhHHHHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHH
Confidence             899999876655 4111100   0       000011123467777777777777765433   789999999999999


Q ss_pred             HHHHhhcCCCeEEe------CCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741          330 LNGIKEKLDGVVVN------GSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM  401 (457)
Q Consensus       330 ~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~  401 (457)
                      .+.|++ + ++.+.      .++.  ...++.+.+++.+..++...|  +||.+.+|..|...                 
T Consensus       348 ~~~L~~-~-g~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~~~~~~~~-----------------  406 (437)
T 3g0t_A          348 KKMFLD-N-GFNIVYDKDGNEPLA--DGFYFTVGYKGMDSSKLIEKFVRYGMCAITLKTTGSK-----------------  406 (437)
T ss_dssp             HHHHHT-T-TEEESSCEETTEECC--SSSEEEEEETTCCHHHHHHHHHHTTEECEESTTTTCC-----------------
T ss_pred             HHHHHH-c-CCEEeccccCCCCCc--eeEEEEEecCCCCHHHHHHHHHHcCeEEeeccccCCC-----------------
Confidence            999999 5 88876      2211  244556666656677777777  69999988766431                 


Q ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..+++||+++.. +++|+++++++|++++++
T Consensus       407 ~~~~iRis~~~~-~~e~i~~~~~~l~~~~~~  436 (437)
T 3g0t_A          407 RNEAMRICTSLL-PESQFPDLEKRLQMLNAE  436 (437)
T ss_dssp             CTTCEEEECSSS-CGGGHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEecC-CHHHHHHHHHHHHHHHhc
Confidence            126899999954 899999999999988753

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=100.00  E-value=2.3e-31  Score=264.23  Aligned_cols=332  Identities=17%  Similarity=0.172  Sum_probs=248.2

Q ss_pred             cEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           58 PLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        58 ~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      .-|+|+.++.+    .++++.+++.+.+.. ++++.. .+.+.+...+...++++++++++|.+ + .+++++||+|+.+
T Consensus        43 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~a~~~  118 (399)
T 3tqx_A           43 KEVLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMA-SVRFICGTQTIHKELEKDISEFLGTD-D-TILYSSCFDANGG  118 (399)
T ss_dssp             EEEEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCC-SCCCCCCCBHHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHT
T ss_pred             eeEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCC-CcCccccCchHHHHHHHHHHHHHCCC-c-EEEECchHHHHHH
Confidence            34666665553    469999999998876 333221 12222333467889999999999986 3 5666677999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEecccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNN  207 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~  207 (457)
                      +++++.    ++|+.|+++.++|+++..+++..   |.+++.++..     |++++++++++      ++++|++++++|
T Consensus       119 ~l~~~~----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~-----d~~~l~~~l~~~~~~~~~~~~v~~~~~~n  186 (399)
T 3tqx_A          119 LFETLL----GPEDAIISDELNHASIIDGIRLC---KAQRYRYKNN-----AMGDLEAKLKEADEKGARFKLIATDGVFS  186 (399)
T ss_dssp             THHHHC----CTTCEEEEETTCCHHHHHHHHSC---CSEEEEECTT-----CTTHHHHHHHHHHTTTCSSEEEEEESEET
T ss_pred             HHHHhc----CCCCEEEECCcccHHHHHHHHHc---CCceeEeCCC-----CHHHHHHHHHhhhccCCCceEEEEeCCCC
Confidence            999887    89999999999999998876655   9999988863     78888888875      899999999999


Q ss_pred             ccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc------CCC--CcccEEEeccccccC-CCCceEEEEecCCCccc
Q 040741          208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD------VEK--WNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRV  278 (457)
Q Consensus       208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~------~~~--~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~  278 (457)
                      |+|.+.|+++|.++|++||+++|+|++|+.+.....      ...  .++|+++.|+||.+| ++| |+++++++.++.+
T Consensus       187 ptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~~  265 (399)
T 3tqx_A          187 MDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GYTSGHKEIIEWL  265 (399)
T ss_dssp             TTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EEEEECHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EEEEcCHHHHHHH
Confidence            999999999999999999999999999976543221      111  257999999999776 887 9999988766555


Q ss_pred             cccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      ......+     ...++.+...++++..+++...+++++..++++++++++.+.|++ + ++.+..+    ..+++.+.+
T Consensus       266 ~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~----~~~~~~~~~  334 (399)
T 3tqx_A          266 RNRSRPY-----LFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEK-L-GFQLVPG----NHPIIPVML  334 (399)
T ss_dssp             HHHCHHH-----HSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC----SSSEEEEEE
T ss_pred             HHhCcce-----eccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH-c-CCCcCCC----CCCEEEEEe
Confidence            4432111     123467777878888888876556789999999999999999998 4 6555422    144555555


Q ss_pred             ccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          359 AYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       359 ~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +.. +..++...|  +||.+.++.+...                ....+++||+++..++++|+++++++|+++++++
T Consensus       335 ~~~~~~~~~~~~l~~~gi~v~~~~~~~~----------------~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~  396 (399)
T 3tqx_A          335 GDAQLATNMADHLLQEGIYVVGFSYPVV----------------PMGKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL  396 (399)
T ss_dssp             ECHHHHHHHHHHHHHTTEECCEECTTTS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHCCCEEeeeCCCCC----------------CCCCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence            432 345666655  6898886543211                1233799999998899999999999999998865

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=100.00  E-value=1.9e-31  Score=262.81  Aligned_cols=328  Identities=14%  Similarity=0.134  Sum_probs=244.7

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCC
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g  126 (457)
                      +.+++.|..+.+. +.++++.+++.+.+... .++        +.   .. .++++.++++++      ++++++++|+|
T Consensus        22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~~y--------~~---~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g   89 (377)
T 3fdb_A           22 GQGVLPLWVAESDFSTCPAVLQAITDAVQREAFGY--------QP---DG-SLLSQATAEFYADRYGYQARPEWIFPIPD   89 (377)
T ss_dssp             CTTSEECCSSCCCSCCCHHHHHHHHHHHHTTCCSS--------CC---SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESC
T ss_pred             CCCeeeecccCCCCCCCHHHHHHHHHHHHcCCCCC--------CC---CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCC
Confidence            4567788776655 67899999999988752 111        11   11 355666666665      67788999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      ||+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.+  +|+++++++++++++++++++++
T Consensus        90 ~~~a~~~~~~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~--~d~~~l~~~l~~~~~~v~i~~p~  160 (377)
T 3fdb_A           90 VVRGLYIAIDHFT----PAQSKVIVPTPAYPPFFHLLSAT---QREGIFIDATGG--INLHDVEKGFQAGARSILLCNPY  160 (377)
T ss_dssp             HHHHHHHHHHHHS----CTTCCEEEEESCCTHHHHHHHHH---TCCEEEEECTTS--CCHHHHHHHHHTTCCEEEEESSB
T ss_pred             hHHHHHHHHHHhc----CCCCEEEEcCCCcHhHHHHHHHc---CCEEEEccCCCC--CCHHHHHHHhccCCCEEEEeCCC
Confidence            9999999999987    89999999999999998887776   999999998866  99999999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCC---CcccEEEeccccccCCCC--ceEEEE-ec
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEK---WNVSLMSLSGHKIYGPKG--VGALYM-RR  272 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~---~~~Di~~~s~~K~~g~~G--~G~l~~-~~  272 (457)
                      ||+|.+.|   +++|+++|++||+++|+|++|+....     ...+..   .+.++++.|++|.+|.+|  +|++++ ++
T Consensus       161 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  240 (377)
T 3fdb_A          161 NPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGLKCAQIIFSNP  240 (377)
T ss_dssp             TTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGGCCEEEECCSH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcchhheEEEeCCH
Confidence            99999987   66777789999999999999986322     222222   245588999999887555  798777 44


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +..+.+.....       ...++++...+.++.++++...+.+++..++++++++++.+.|++.+|++.+..+..   ..
T Consensus       241 ~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---~~  310 (377)
T 3fdb_A          241 SDAEHWQQLSP-------VIKDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPMQA---TY  310 (377)
T ss_dssp             HHHHHHHHSCH-------HHHCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCCSB---CS
T ss_pred             HHHHHHHHHHH-------hhcCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCe---eE
Confidence            44444332211       122467777777777777655556788899999999999999987567888875432   22


Q ss_pred             eEEEEEccc-cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          353 NLNLSFAYV-EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       353 ~~~~~~~~~-~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+.+.++.. ...++...+  + ||.+.+|..|...                 ..+++||+++.  +++++++++++|++
T Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~-----------------~~~~~Ris~~~--~~e~i~~~l~~l~~  371 (377)
T 3fdb_A          311 LMWIDFRDTTIEGSPSEFFIEKAKVAMNDGAWFGED-----------------GTGFCRLNFAT--SREVLEEAIDRMAK  371 (377)
T ss_dssp             EEEEECTTSCCCSCHHHHHHHHHCEECEEGGGGCGG-----------------GTTEEEEECCS--CHHHHHHHHHHHHH
T ss_pred             EEEEECcccCCCHHHHHHHHHhCCEEecCChhccCC-----------------CCCEEEEEeCC--CHHHHHHHHHHHHH
Confidence            334555532 123444444  3 9999999876531                 23899999984  79999999999999


Q ss_pred             HHHH
Q 040741          429 QVEK  432 (457)
Q Consensus       429 ~~~~  432 (457)
                      ++++
T Consensus       372 ~l~~  375 (377)
T 3fdb_A          372 AVSH  375 (377)
T ss_dssp             HHTT
T ss_pred             HHhh
Confidence            8764

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=100.00  E-value=9.3e-31  Score=256.56  Aligned_cols=317  Identities=16%  Similarity=0.160  Sum_probs=243.1

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhh----ccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLS----RYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~----~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      ..+.|+|+.+.+. ++++++.+++.+.+..    ..++|..           ...++++++++++|++++++++|+|+|+
T Consensus        25 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~~i~~t~g~~~   93 (360)
T 3hdo_A           25 IASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPSWIIMANGSDE   93 (360)
T ss_dssp             CTTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGGGEEEESSHHH
T ss_pred             ccceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcceEEEcCCHHH
Confidence            3577899887776 6789999999998865    2333221           2368999999999998889999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      |++++++++.    ++||+|++..+.|.++...++..   |.+++.++.+.++.+  ++++++++  ++++++++++||+
T Consensus        94 al~~~~~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~--~~l~~~~~--~~~v~i~~p~npt  162 (360)
T 3hdo_A           94 VLNNLIRAFA----AEGEEIGYVHPSYSYYGTLAEVQ---GARVRTFGLTGDFRI--AGFPERYE--GKVFFLTTPNAPL  162 (360)
T ss_dssp             HHHHHHHHHC----CTTCEEEEESSSCTHHHHHHHHH---TCEEEEECBCTTSSB--TTCCSSBC--SSEEEEESSCTTT
T ss_pred             HHHHHHHHHh----CCCCEEEEcCCChHHHHHHHHHC---CCEEEEeeCCCCCCH--HHHHhhcC--CCEEEEeCCCCCC
Confidence            9999999997    89999999999999998887776   999999998766544  55544443  5699999999999


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcC--CCcccC-CCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccC
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALG--KIPVDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g--~~~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~  284 (457)
                      |.+.|+++|.++|+++|+++|+|++|+..  ...... ...+.++++.|++|.+|.+|  +|+++++++..+++..... 
T Consensus       163 G~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~-  241 (360)
T 3hdo_A          163 GPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGMRIGLAIARPEVIAALDKIRD-  241 (360)
T ss_dssp             CCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTSCCEEEECCHHHHHHHHHHSC-
T ss_pred             CCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCccceeeEeeCHHHHHHHHHhCC-
Confidence            99999999999999999999999999842  111111 12345688999999877554  7999987765555543332 


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                              ..+.+...+.++.++++. .+.+++..++.+++++++.+.|++ + ++.+..+    ...++.+.+++.+..
T Consensus       242 --------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~~~~~----~~~~~~~~~~~~~~~  306 (360)
T 3hdo_A          242 --------HYNLDRLAQAACVAALRD-QAYLSECCRRIRETREWFTTELRS-I-GYDVIPS----QGNYLFATPPDRDGK  306 (360)
T ss_dssp             --------SCCSCHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHH-T-TCEECCC----SSSEEEEECTTCCHH
T ss_pred             --------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CCEEcCC----CccEEEEECCCCCHH
Confidence                    135677777777777764 345788899999999999999999 5 7776532    144555666655667


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++...|  +||.+.++..                   ....+++||+++   +.+|+|+++++|++..+
T Consensus       307 ~l~~~l~~~gi~v~~~~~-------------------~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          307 RVYDGLYARKVLVRHFSD-------------------PLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             HHHHHHHHTTEECBCCCS-------------------TTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHCCEEEEECCC-------------------CCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence            777766  6898887542                   112379999987   79999999999987765

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=5.9e-31  Score=263.56  Aligned_cols=334  Identities=11%  Similarity=0.127  Sum_probs=251.8

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESN  131 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~  131 (457)
                      ..+++.|..+.+. +.++++.+++.+.+....       +.|+....+..+++.+++++.+|  +++++++|++|+++|+
T Consensus        60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~  132 (421)
T 3l8a_A           60 NPELLQMWVADMDFLPVPEIKEAIINYGREHI-------FGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAI  132 (421)
T ss_dssp             CTTCEECCSSCCCSCCCHHHHHHHHHHHHHCC-------SSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHH
T ss_pred             CCCeeecccCCCCCCCCHHHHHHHHHHHhcCC-------cCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHH
Confidence            4566777655444 678999999999886421       11111124677888899999988  5677899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC--CCCHHHHHHhcC-CCceEEEEecccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG--IVNLDELRAAIR-PDTGLISVMAVNN  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~--~~d~~~le~~i~-~~t~li~i~~~~~  207 (457)
                      +++++++.    ++|++|++..+.|.++...++..   |.+++.++.+ .++  .+|+++|+++++ +++++|++++++|
T Consensus       133 ~~a~~~~~----~~gd~Vi~~~~~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~n  205 (421)
T 3l8a_A          133 SIALQAFS----EKGDAVLINSPVYYPFARTIRLN---DHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHN  205 (421)
T ss_dssp             HHHHHHHS----CTEEEEEEEESCCHHHHHHHHHT---TEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBT
T ss_pred             HHHHHHhc----CCCCEEEECCCCcHHHHHHHHHC---CCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCC
Confidence            99999987    89999999999999988877665   9999999875 333  689999999998 7999999999999


Q ss_pred             cccccc---ChHHHHHHHHhcCCcEEEehhhhcCCC----cccCC-----CCcccEEEeccccccCCCC--ceEEEEe-c
Q 040741          208 EIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGKI----PVDVE-----KWNVSLMSLSGHKIYGPKG--VGALYMR-R  272 (457)
Q Consensus       208 ~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~-----~~~~Di~~~s~~K~~g~~G--~G~l~~~-~  272 (457)
                      |+|.+.   ++++|+++|++||+++|+|++|+....    ...+.     ..+.++++.|++|.+|..|  +|+++++ +
T Consensus       206 ptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~~~~~  285 (421)
T 3l8a_A          206 PGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAIIQNE  285 (421)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEECCSH
T ss_pred             CCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEEcCCH
Confidence            999884   588999999999999999999975321    11111     1245688999999776444  6999988 5


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +..+.+.+....      ...+++++..+.++.++++...+.+++..++.+++++++.+.|++ +|++.+..+..   ..
T Consensus       286 ~l~~~~~~~~~~------~~~~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~i~~~~~~~---~~  355 (421)
T 3l8a_A          286 SLRRKFQYRQLA------NNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEA-KTKIKVMEPEG---TY  355 (421)
T ss_dssp             HHHHHHHHHHHH------TTCSCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HCSCEEECCSB---SS
T ss_pred             HHHHHHHHHHHh------cccCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHh-CCCceEeCCCe---eE
Confidence            554544433321      123467888888888888765556788999999999999999998 68888876432   22


Q ss_pred             eEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          353 NLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       353 ~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .+.+.++.  .+..++...|   .||.+.+|..|..                 ...+++||+++  +++++|++++++|+
T Consensus       356 ~~~v~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~--~~~~~i~~~l~~l~  416 (421)
T 3l8a_A          356 LVWLDFSAYAIAQPQLSEKLQNEAKVVLNDGAHFGK-----------------EGKYFARLNVA--TPKNTVQEALSRII  416 (421)
T ss_dssp             EEEEECGGGTCCTTHHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred             EEEEeccccCCCHHHHHHHHHHhCCEEEECchhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHH
Confidence            22355543  3566776666   3999998876632                 12389999998  58999999999999


Q ss_pred             HHHH
Q 040741          428 KQVE  431 (457)
Q Consensus       428 ~~~~  431 (457)
                      ++++
T Consensus       417 ~~l~  420 (421)
T 3l8a_A          417 SVFG  420 (421)
T ss_dssp             HHC-
T ss_pred             HHHh
Confidence            8865

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.98  E-value=5.3e-32  Score=275.48  Aligned_cols=341  Identities=17%  Similarity=0.178  Sum_probs=251.6

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc----EEEeCChHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKE----IIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~----i~~t~g~T~  129 (457)
                      .+.|.| .++.+++++++++++.+.+.+.+  |+|+++.+..+....+..+.+++++++++|+++++    +++++|+ +
T Consensus        44 ~~~i~L-~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~sGs-~  121 (483)
T 1rv3_A           44 RVGLEL-IASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGS-P  121 (483)
T ss_dssp             HSSEEC-CTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHH-H
T ss_pred             hcCeEE-EcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEECCcH-H
Confidence            345666 34567899999999999998766  67765444434444566677889999999998654    6666655 8


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH--------HHHHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS--------CRHLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDT  197 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~--------~~~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t  197 (457)
                      ++.+++.++.    ++||+|++++++|.++...        +...   |  ++++.++++ .++.+|+++|+++++ ++|
T Consensus       122 an~~~~~all----~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~---G~~~~~v~~~~~~~~~~iD~d~le~~i~~~~t  194 (483)
T 1rv3_A          122 ANFAVYTALV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISAT---SIFFESMAYKVNPDTGYIDYDRLEENARLFHP  194 (483)
T ss_dssp             HHHHHHHHHT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHH---HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhc----CCCCEEEEecCccCcCcchhhhhcccCcccc---cceEEEEECccccCCCcCCHHHHHHHHhhcCC
Confidence            8888888887    8999999999999887642        2222   4  455566556 568899999999998 789


Q ss_pred             eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC---cccEEEecccc-ccCCCCceEEEEecC
Q 040741          198 GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW---NVSLMSLSGHK-IYGPKGVGALYMRRR  273 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~---~~Di~~~s~~K-~~g~~G~G~l~~~~~  273 (457)
                      ++|++ +++|++ .+.|+++|.++|+++|+++++|++|+.|..+.+....   ++|++++|+|| +.||.| |+++++++
T Consensus       195 klIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gprg-G~i~~~~~  271 (483)
T 1rv3_A          195 KLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIFYRRG  271 (483)
T ss_dssp             SEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEEECS
T ss_pred             cEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCCc-eEEEEcch
Confidence            99999 888887 8899999999999999999999999876554443333   68999999999 568887 99999986


Q ss_pred             CCccccccccCCc----c-------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeE
Q 040741          274 PRIRVEPLINGGG----Q-------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVV  341 (457)
Q Consensus       274 ~~~~~~~~~~~~~----~-------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~  341 (457)
                      ... +. ...|..    .       ......|+++...++++..|++.... ++++..++..++++++.+.|.+ + ++.
T Consensus       272 ~~~-~~-~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~  347 (483)
T 1rv3_A          272 VRS-VD-PKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE-L-GYK  347 (483)
T ss_dssp             BCC---------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-T-TCE
T ss_pred             hhh-hc-cccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHh-c-CCE
Confidence            431 11 000000    0       00112568888888888888887753 6889999999999999999999 5 888


Q ss_pred             EeCCCCCcccceEEEEEc--cccchHHHhcc--cCeEec----ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741          342 VNGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVS----SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF  413 (457)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~----~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~  413 (457)
                      +..+...  ...+.+.+.  +.++.++...|  .||.+.    +|..|.                  ...+.|||+++.+
T Consensus       348 ~~~~~~~--~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~~~------------------~~~~~iRis~~~~  407 (483)
T 1rv3_A          348 IVTGGSD--NHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSA------------------LRPSGLRLGTPAL  407 (483)
T ss_dssp             EGGGSCS--SSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCSCT------------------TSCCEEEEECHHH
T ss_pred             eccCCCC--CceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCCcC------------------CCCceEEeecCCc
Confidence            8764221  123344543  34556666555  588887    665332                  1237999999876


Q ss_pred             CC----HHHHHHHHHHHHHHHHH
Q 040741          414 TT----EAEVDRAIELTVKQVEK  432 (457)
Q Consensus       414 ~t----~edid~~~~~l~~~~~~  432 (457)
                      ++    ++|+++++++|+++++.
T Consensus       408 ~t~g~~~edi~~~~~~l~~~l~~  430 (483)
T 1rv3_A          408 TSRGLLEKDFQKVAHFIHRGIEL  430 (483)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHh
Confidence            66    99999999999999876

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=1.4e-31  Score=265.23  Aligned_cols=324  Identities=16%  Similarity=0.130  Sum_probs=240.6

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~~~i~~t~g~  127 (457)
                      ..++++|+.+.+. +.++.+.+++.+.+.... .    .|  +.  .....++++.+++++    |+  +++++++|+|+
T Consensus        40 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~----~y--~~--~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~  110 (389)
T 1o4s_A           40 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGE-V----KY--TD--PRGIYELREGIAKRIGERYKKDISPDQVVVTNGA  110 (389)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCC-C----CC--CC--TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHH
T ss_pred             CCCEEEccCCCCCCCCCHHHHHHHHHHHhcCC-C----CC--CC--CCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCH
Confidence            3567888887766 568999999999886421 0    11  10  012345666666665    75  56789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |+|+.++++++.    ++|++|+++.+.|+++...++..   |.+++.++.+.  ++.+|+++|++++++++++|+++++
T Consensus       111 t~al~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  183 (389)
T 1o4s_A          111 KQALFNAFMALL----DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSP  183 (389)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESS
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEecCCccCCCCCHHHHHHhcccCceEEEEcCC
Confidence            999999999987    89999999999999998877655   99999999874  4578999999999999999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---cc---CCC-CcccEEEeccccccCCCC--ceEEEEecC
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---VD---VEK-WNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---~~---~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      +||+|.+.|   +++|.++|++||+++|+|++|+.+...   .+   +.. .+.|+++.|++|.+|++|  +|+++++++
T Consensus       184 ~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~l~~~~~  263 (389)
T 1o4s_A          184 NNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEK  263 (389)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcccceEEEEeCHH
Confidence            999999988   899999999999999999999865431   11   111 367999999999888666  899999877


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ..+++.....++      . .+.+.....++..+++   .++++..++++++++++.+.|++ + ++.+..+.   .+.+
T Consensus       264 ~~~~l~~~~~~~------~-~~~~~~~~~a~~~~l~---~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~~~~  328 (389)
T 1o4s_A          264 VATAVSKIQSHT------T-SCINTVAQYAALKALE---VDNSYMVQTFKERKNFVVERLKK-M-GVKFVEPE---GAFY  328 (389)
T ss_dssp             HHHHHHHHHHHH------T-CSCCHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCS---BSSE
T ss_pred             HHHHHHHHhhhc------c-cCCCHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHh-c-CCeeecCC---cceE
Confidence            655554433221      1 1334444444434433   23788889999999999999998 5 66665422   1333


Q ss_pred             EEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.+.++ .+..++...|   +||.+.+|..|..                   .+++||+++.  +++++++++++|++++
T Consensus       329 ~~~~~~-~~~~~l~~~l~~~~gi~v~~g~~f~~-------------------~~~~Ris~~~--~~~~l~~~l~~l~~~l  386 (389)
T 1o4s_A          329 LFFKVR-GDDVKFCERLLEEKKVALVPGSAFLK-------------------PGFVRLSFAT--SIERLTEALDRIEDFL  386 (389)
T ss_dssp             EEEECS-SCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred             EEEeCC-CCHHHHHHHHHHHCCEEEeCchhcCC-------------------CCeEEEEEeC--CHHHHHHHHHHHHHHH
Confidence            444554 4556666655   4899988865432                   1699999984  8999999999999876


Q ss_pred             H
Q 040741          431 E  431 (457)
Q Consensus       431 ~  431 (457)
                      +
T Consensus       387 ~  387 (389)
T 1o4s_A          387 N  387 (389)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.98  E-value=2.6e-31  Score=265.36  Aligned_cols=341  Identities=15%  Similarity=0.155  Sum_probs=247.7

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC--CC-CcEEEeCC
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA--SP-KEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~--~~-~~i~~t~g  126 (457)
                      +.++++|..+.+. +.++.+.+++.+.+....      .+.|+  ......++++.+++++    |.  ++ +++++|+|
T Consensus        36 g~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g  107 (412)
T 2x5d_A           36 GEDIIDLSMGNPDGPTPPHIVEKLCTVAQRED------THGYS--TSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIG  107 (412)
T ss_dssp             TCCCEECSSCCCCSCCCHHHHHHHHHTC-----------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESC
T ss_pred             CCCEEecCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCC--CCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCC
Confidence            3456777776655 467999999988875320      11111  1123456777777777    85  55 68999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-C-CCCHHHHHHhcCCCceEEEEec
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-G-IVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~-~~d~~~le~~i~~~t~li~i~~  204 (457)
                      +|+|+.++++++.    ++|++|++..+.|+++...++..   |.+++.++.+.+ + .+|++++++++++++++|++++
T Consensus       108 ~~~a~~~~~~~~~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~l~~  180 (412)
T 2x5d_A          108 SKEGLAHLMLATL----DHGDTILVPNPSYPIHIYGAVIA---GAQVRSVPLVPGIDFFNELERAIRESIPKPRMMILGF  180 (412)
T ss_dssp             HHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHH---TCEEEEEECSTTSCHHHHHHHHHHTEESCCSEEEEES
T ss_pred             hHHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeecCCccCCCCCHHHHHHhcccCceEEEECC
Confidence            9999999999987    89999999999999998887766   999999998754 3 3789999999998899999999


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC----CcccEEEeccccccCCCC--ceEEEEe
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      ++||+|.+.|   +++|.++|++||+++|+|++|+.+..    ..++..    .+.|+++.|++|.+|++|  +|+++++
T Consensus       181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  260 (412)
T 2x5d_A          181 PSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGWRIGFMVGN  260 (412)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTSCCEEEEEC
T ss_pred             CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccccCCcccceEEEEcC
Confidence            9999999987   67899999999999999999986532    112221    367899999999888555  7999998


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ++.++++......       ...+.+.....++..+++...+.+++..++++++++++.+.|.+ + ++.+..+.   .+
T Consensus       261 ~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~---~g  328 (412)
T 2x5d_A          261 PELVSALARIKSY-------HDYGTFTPLQVAAIAALEGDQQCVRDIARQYQQRRDVLVKGLRE-A-GWMVENPK---AS  328 (412)
T ss_dssp             HHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCCCCCS---BS
T ss_pred             HHHHHHHHHHHhh-------hccCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCEecCCC---ee
Confidence            7665555443221       12356666666666666543345788888999999999999988 4 66554321   12


Q ss_pred             ceEEEEEc-cc---cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          352 GNLNLSFA-YV---EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       352 ~~~~~~~~-~~---~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      .++.+.++ ..   +..++...|   +||.+.+|..|..                 ...+++||+++.  ++++++++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~~~l~~~l~  389 (412)
T 2x5d_A          329 MYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD-----------------YGDDHVRFALIE--NRDRLRQAVR  389 (412)
T ss_dssp             SEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHH
T ss_pred             eEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHH
Confidence            34455554 22   456676665   3999999876632                 123799999997  7999999999


Q ss_pred             HHHHHHHHHHhcChhHH
Q 040741          425 LTVKQVEKLREMSPLYE  441 (457)
Q Consensus       425 ~l~~~~~~~~~~~~~~~  441 (457)
                      +|++++++++..+|..+
T Consensus       390 ~l~~~l~~~~~~~~~~~  406 (412)
T 2x5d_A          390 GIKAMFRADGLLSPQRK  406 (412)
T ss_dssp             HHHHHHHHTTCC-----
T ss_pred             HHHHHHHhcCCcChHHH
Confidence            99999999888887643

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.98  E-value=1.4e-30  Score=267.28  Aligned_cols=353  Identities=16%  Similarity=0.154  Sum_probs=241.3

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ..+.||++..++..++.++..+..   . +.|+....+..+....+...++++++++++|+++++++||+|||+|+.+++
T Consensus       107 ~~p~~~~~~~~~~~~~~~~~~~l~---~-~~n~~~~~~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al  182 (515)
T 2jis_A          107 GHPRFFNQLFSGLDPHALAGRIIT---E-SLNTSQYTYEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAV  182 (515)
T ss_dssp             TSTTEESSSCCCCCHHHHHHHHHH---H-HHCCCTTCTTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHH
T ss_pred             CCCCeEEEeeCCCCHHHHHHHHHH---H-HhccCCCchhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHH
Confidence            366799988777766666653332   2 234444344445555677888999999999998778999999999999999


Q ss_pred             HHhhhhh----cCCCC------EEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCCCCCCCHHHHHHhcCC------C
Q 040741          136 KGVMHFY----KDKKR------HVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELRAAIRP------D  196 (457)
Q Consensus       136 ~~~~~~~----~~~g~------~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~~------~  196 (457)
                      .++...+    +.+|+      .|+++...|+++..+++.+   |.   +++.+|.+.++.+|+++|+++|++      +
T Consensus       183 ~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~---g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~  259 (515)
T 2jis_A          183 NLARYQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFL---GLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAV  259 (515)
T ss_dssp             HHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHc---CCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCC
Confidence            8875321    12354      8999999999999988876   55   899999988899999999999975      4


Q ss_pred             ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCCC-cccEEEecccccc-CCCCceEEE
Q 040741          197 TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEKW-NVSLMSLSGHKIY-GPKGVGALY  269 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~~-~~Di~~~s~~K~~-g~~G~G~l~  269 (457)
                      +++|++++++|++|.+.|+++|+++|++||+++|+|++++.+..+.+     +... ++|++++++||++ +|.|+|+++
T Consensus       260 ~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~  339 (515)
T 2jis_A          260 PFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALL  339 (515)
T ss_dssp             EEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEE
T ss_pred             cEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEE
Confidence            89999999999999999999999999999999999999998876543     3333 7899999999965 588899999


Q ss_pred             EecC--CCcc----ccccccCCccc--cccccCCCChh-----HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          270 MRRR--PRIR----VEPLINGGGQE--RGIRSGTLPTP-----LIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       270 ~~~~--~~~~----~~~~~~~~~~~--~~~~~~t~~~~-----~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                      ++++  .+.+    ..++..++...  ..+..++.+..     ...++..++..+ .++++++.++..++++++.+.|.+
T Consensus       340 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~  419 (515)
T 2jis_A          340 LQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKK  419 (515)
T ss_dssp             ESCCSCHHHHHHCC---------CCSCGGGCCGGGCSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EeChHHHHHHHhcCCchhccCCcccccccCCCCCCCCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9976  3332    12333222110  00111111100     011222223322 346888999999999999999999


Q ss_pred             cCCCeEEeCCCCCcccceEEEEEccc------cchHHHh-------cccCeEecccCccCCCCCChhHHHHHcCCCc-cC
Q 040741          336 KLDGVVVNGSMERRYIGNLNLSFAYV------EGESLLM-------GLKEVAVSSGSACTSASLEPSYVLRALGVDE-DM  401 (457)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-------~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~-~~  401 (457)
                       +++++++.++.   .+.+.|.+...      +..++..       .+.+.....|..|..             ... ..
T Consensus       420 -~~g~~~~~~~~---~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~G~~~~~-------------~~~~~~  482 (515)
T 2jis_A          420 -REGFELVMEPE---FVNVCFWFVPPSLRGKQESPDYHERLSKVAPVLKERMVKEGSMMIG-------------YQPHGT  482 (515)
T ss_dssp             -STTEEESSCCS---SSEEEEEECCGGGTTCTTSTTHHHHHHTHHHHHHHHHHHHTSCEEE-------------EEEETT
T ss_pred             -CCCEEEeCCCC---eeEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEE-------------EEEECC
Confidence             89999987532   24445544211      1112111       111222222322210             000 01


Q ss_pred             CCCeEEEec-CCCCCHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGI-GRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       402 ~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..+.+||++ +..+|++||++++++|++++++
T Consensus       483 ~~~~lRis~~~~~~t~edid~~~~~l~~~~~~  514 (515)
T 2jis_A          483 RGNFFRVVVANSALTCADMDFLLNELERLGQD  514 (515)
T ss_dssp             EEEEEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            126899999 7899999999999999987653

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.98  E-value=5.9e-31  Score=262.53  Aligned_cols=335  Identities=13%  Similarity=0.104  Sum_probs=246.4

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~~~i~~t~g~  127 (457)
                      +.++++|+.+.+. +.++++.+++ +.+....       ..|+.  .....++++.++++++      ++++++++|+||
T Consensus        42 g~~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~-------~~y~~--~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~  111 (409)
T 2gb3_A           42 GVRIHHLNIGQPDLKTPEVFFERI-YENKPEV-------VYYSH--SAGIWELREAFASYYKRRQRVDVKPENVLVTNGG  111 (409)
T ss_dssp             TCEEEECSSCCCCSCCCTHHHHHH-HHTCCSS-------CCCCC--TTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHH
T ss_pred             CCCEEeccCCCCCCCCCHHHHHHH-HHHhcCC-------CCCCC--CCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCH
Confidence            3567888887776 5678999999 8775321       00110  1224466666666663      456789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |+|+.++++++.    ++|++|+++.+.|+++..+++..   |.+++.++.+.  +..+ +++|++++++++++|+++++
T Consensus       112 t~a~~~~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~-~~~l~~~l~~~~~~v~~~~p  183 (409)
T 2gb3_A          112 SEAILFSFAVIA----NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAI-PQNLESFINERTKGIVLSNP  183 (409)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCC-CTTGGGGCCTTEEEEEEESS
T ss_pred             HHHHHHHHHHhC----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEeccCCCCCCcc-HHHHHHhhCcCCeEEEECCC
Confidence            999999999987    89999999999999998887766   99999999874  2334 89999999989999999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---ccc-CCC-CcccEEEeccccccCCCC--ceEEEEec-CC
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVD-VEK-WNVSLMSLSGHKIYGPKG--VGALYMRR-RP  274 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~-~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~  274 (457)
                      +||+|.+.|   +++|.++|++||+++|+|++|+.+..   ... +.. .+.|+++.|++|.+|++|  +|++++++ +.
T Consensus       184 ~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~l  263 (409)
T 2gb3_A          184 CNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEEL  263 (409)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHH
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCccccCCCCEEEEecchhccCCccceEEEEEECcHHH
Confidence            999999976   88999999999999999999986543   122 222 257999999999888666  89999987 65


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-eCCCCCcccce
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV-NGSMERRYIGN  353 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~  353 (457)
                      .+++......+       . +++.....++.++++.....+++..++++++++++.+.|++ + ++.+ ..+ ..  +.+
T Consensus       264 ~~~l~~~~~~~-------~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~--~~~  330 (409)
T 2gb3_A          264 ISHAMKLAQGR-------L-APPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-H-GLKRFTKP-SG--AFY  330 (409)
T ss_dssp             HHHHHHHHHHS-------C-CCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCBCCC-SB--SSE
T ss_pred             HHHHHHHHhcc-------C-CCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH-c-CceeeeCC-Ce--eEE
Confidence            55554433211       1 45666666666666443445788888999999999999998 5 6665 432 21  333


Q ss_pred             EEEEEccccchHHHhcc--c------CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGL--K------EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l--~------~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      +.+.+++.+..++...|  +      ||.+.+|..|...              .....+++||+++  ++++++++++++
T Consensus       331 ~~~~~~~~~~~~l~~~l~~~~~~~~~gi~v~~g~~f~~~--------------~~~~~~~iRis~~--~~~e~i~~~~~~  394 (409)
T 2gb3_A          331 ITAELPVEDAEEFARWMLTDFNMDGETTMVAPLRGFYLT--------------PGLGKKEIRIACV--LEKDLLSRAIDV  394 (409)
T ss_dssp             EEEECSSSCHHHHHHHHHHSCCBTTEEEECEEGGGGCSS--------------TTTTSSEEEEECC--SCHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHhccccccCcEEEeCchHhCCC--------------CCCCCCEEEEEeC--CCHHHHHHHHHH
Confidence            44455444556666665  5      8999888755321              1122479999998  789999999999


Q ss_pred             HHHHHHHHHhc
Q 040741          426 TVKQVEKLREM  436 (457)
Q Consensus       426 l~~~~~~~~~~  436 (457)
                      |++++++++.-
T Consensus       395 l~~~l~~~~~~  405 (409)
T 2gb3_A          395 LMEGLKMFCSS  405 (409)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHhhhc
Confidence            99999887653

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.98  E-value=2.2e-31  Score=264.53  Aligned_cols=339  Identities=13%  Similarity=0.144  Sum_probs=246.3

Q ss_pred             CCCcEEecCCCCCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           55 AGRPLYLDMQATTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        55 ~~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      ..++++|+.+.+.+   .++++.+++.+.+.....      ...+|.......++++.+++++|++++++++|+|+++|+
T Consensus        31 ~~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~------~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al  104 (397)
T 2zyj_A           31 RPGILSFAGGLPAPELFPKEEAAEAAARILREKGE------VALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQAL  104 (397)
T ss_dssp             STTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHH------HHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHH
T ss_pred             CCCceecCCCCCCchhCCHHHHHHHHHHHHHhcch------hhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHH
Confidence            34678887765542   568899999888764210      000111112457899999999998888999999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEE-EEecccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLI-SVMAVNNEI  209 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li-~i~~~~~~~  209 (457)
                      .++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++ +|++++++++++ ++++| ++++++||+
T Consensus       105 ~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~npt  176 (397)
T 2zyj_A          105 DLVGKVFL----DEGSPVLLEAPSYMGAIQAFRLQ---GPRFLTVPAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNPT  176 (397)
T ss_dssp             HHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTTT
T ss_pred             HHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCEEEecCcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCCC
Confidence            99999987    88999999999999988776554   9999999887655 899999999975 78877 579999999


Q ss_pred             ccccCh---HHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCcc------cEEEeccccccCCCC--ceEEEEecCC
Q 040741          210 GVIQPM---EEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWNV------SLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       210 G~~~~l---~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~~------Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      |.+.|.   ++|.++|++||+++|+|++|+.+..    +.++..++.      ++++.|+||.+| +|  +|+++++++.
T Consensus       177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~~~~  255 (397)
T 2zyj_A          177 GGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS-PGLRVAFAVAHPEA  255 (397)
T ss_dssp             CCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-GGGCCEEEECCHHH
T ss_pred             CCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-ccceeEEEecCHHH
Confidence            999885   4899999999999999999986432    222222222      388999999888 44  7999998766


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeCCCCCcccc
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLD-GVVVNGSMERRYIG  352 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~  352 (457)
                      .+++......      ... +.+.....++..+++... +.+++..++++++++++.+.|++.+| ++.+..+..   +.
T Consensus       256 ~~~l~~~~~~------~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~~---g~  325 (397)
T 2zyj_A          256 LQKLVQAKQG------ADL-HTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTRPKG---GM  325 (397)
T ss_dssp             HHHHHHHHHH------HHS-SCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECCCSB---SS
T ss_pred             HHHHHHHHHh------hcC-CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEccCCc---cE
Confidence            5555433221      112 235555555555655322 34677888888999999999987446 577754321   34


Q ss_pred             eEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          353 NLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       353 ~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ++.+.++ +.+..++...|  +||.+.+|..|...               ....+++||+++.. +++++++++++|+++
T Consensus       326 ~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~~~i~~~~~~l~~~  389 (397)
T 2zyj_A          326 FVWMELPKGLSAEGLFRRALEENVAFVPGGPFFAN---------------GGGENTLRLSYATL-DREGIAEGVRRLGRA  389 (397)
T ss_dssp             EEEEECSTTCCHHHHHHHHHHTTEEEEESGGGCTT---------------SCCTTEEEEECSSS-CHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHCCCEEechHHhcCC---------------CCCCCeEEEEcCCC-CHHHHHHHHHHHHHH
Confidence            4555554 24456676666  69999988766431               11237999999875 899999999999999


Q ss_pred             HHHHH
Q 040741          430 VEKLR  434 (457)
Q Consensus       430 ~~~~~  434 (457)
                      ++++.
T Consensus       390 l~~~~  394 (397)
T 2zyj_A          390 LKGLL  394 (397)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.98  E-value=4e-30  Score=254.44  Aligned_cols=331  Identities=14%  Similarity=0.072  Sum_probs=242.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPK-EIIFTSGATES  130 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~-~i~~t~g~T~a  130 (457)
                      .+.++|+.+.+. +.++++.+++.+.+... .+++.      .....+..+.+.+.+.+++|  ++++ ++++|+|+|+|
T Consensus        30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~y~~------~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a  103 (386)
T 1u08_A           30 HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYAP------MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA  103 (386)
T ss_dssp             TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred             CCeEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHH
Confidence            567899887765 57899999999988641 11111      11112333334444444457  4577 89999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +.++++++.    ++|++|++..+.|+++...++..   |.+++.++.+. ++.+|++++++++++++++|++++++||+
T Consensus       104 ~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~npt  176 (386)
T 1u08_A          104 LYAAITALV----RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS  176 (386)
T ss_dssp             HHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHHHHHHhC----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEeecCcccCcCCHHHHHHhhcccCEEEEEeCCCCCC
Confidence            999999987    88999999999999988776655   99999999875 46799999999999899999999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCC----CCcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVE----KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~----~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      |.+.|   +++|.++|++||+++|+|++|+....    ...+.    ..+.|+++.|+||.+|++|  +|+++++++..+
T Consensus       177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~  256 (386)
T 1u08_A          177 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISA  256 (386)
T ss_dssp             CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred             CccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcccceEEEEcCHHHHH
Confidence            99987   68899999999999999999985321    11221    2367999999999888666  899999877655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++......       ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+..   +.++.+
T Consensus       257 ~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~~~~~  324 (386)
T 1u08_A          257 EIRKVHQY-------LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE-S-RLEILPCEG---TYFLLV  324 (386)
T ss_dssp             HHHHHHHH-------HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS-S-SCEECCCCB---SSEEEE
T ss_pred             HHHHHHHh-------hccCCChHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH-C-CCeecCCCc---eEEEEE
Confidence            55443211       12245566666666677654445788889999999999999998 5 777764321   345556


Q ss_pred             EEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          357 SFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       357 ~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .++.   .+..++...+   +||.+.+|..|...               ....+++||+++.  ++++|++++++|++
T Consensus       325 ~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~--~~~~i~~~~~~l~~  385 (386)
T 1u08_A          325 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCAD---------------PFPHKLIRLCFAK--KESTLLAAAERLRQ  385 (386)
T ss_dssp             ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSS---------------CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             ecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCC---------------CCCCCEEEEEEcC--CHHHHHHHHHHHhh
Confidence            6654   2456666644   49999988654321               0123799999984  79999999998864

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.98  E-value=3.7e-31  Score=263.41  Aligned_cols=308  Identities=12%  Similarity=0.088  Sum_probs=227.5

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+...++|+++++++|.+  ++++++|||+|++++++++.    ++||+||++.+.|.+....+. .++..|+
T Consensus        74 ~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~ssGt~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~  147 (415)
T 2fq6_A           74 LFYGRRGTLTHFSLQQAMCELEGGA--GCVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  147 (415)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            3445445578899999999999985  37777899999999999987    899999999999999887764 3456799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcc
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      ++++++.+     |+++++++|+++|++|++++++||+|.+.|+++|+++|++  +|+++|+|++|+.+.....+ ..++
T Consensus       148 ~v~~v~~~-----d~~~le~ai~~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~~g~  221 (415)
T 2fq6_A          148 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-DFGI  221 (415)
T ss_dssp             EEEEECTT-----CGGGGGGGCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-GGTC
T ss_pred             EEEEECCC-----CHHHHHHhhccCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-ccCC
Confidence            99999865     8999999999999999999999999999999999999999  99999999999865321112 3578


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |++++|+||++|+.|   +|+++++++..+++......       ..+..++.....+..++    +.+..+.++..+++
T Consensus       222 Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~-------~G~~~~~~~a~~~~~~l----~~l~~r~~~~~~n~  290 (415)
T 2fq6_A          222 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYL-------MGQMVDADTAYITSRGL----RTLGVRLRQHHESS  290 (415)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHH-------TTCCCCHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             eEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence            999999999888765   69999887654444332210       11233333233222233    24566677778888


Q ss_pred             HHHHHHHhhcCCCeEEe-CCC--C-----------CcccceEEEEEccc----cchHHHhcc--cCeEecccCccCCCCC
Q 040741          327 DRLLNGIKEKLDGVVVN-GSM--E-----------RRYIGNLNLSFAYV----EGESLLMGL--KEVAVSSGSACTSASL  386 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~----~~~~~~~~l--~~i~~~~g~~~~~~~~  386 (457)
                      +++.+.|++ .|.+.-+ -+.  .           ...++++.|.+++.    +...++..+  .+++++.|+.|+....
T Consensus       291 ~~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a~s~G~~~s~~~~  369 (415)
T 2fq6_A          291 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA  369 (415)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEECSCCCSSSCEEEE
T ss_pred             HHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEeccCCCCceeEEe
Confidence            899999988 6665422 111  0           13577888888752    345666666  4788899999986543


Q ss_pred             -Ch---hHHHH--HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          387 -EP---SYVLR--ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       387 -~~---~~~l~--~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                       .|   ++++.  ++|+.    ++.|||+++..+++++|+.+.++|++
T Consensus       370 ~~p~~~s~~~~~~~~g~~----~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          370 NQPEHIAAIRPQGEIDFS----GTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             ECHHHHHTTCTTCCCCCC----SCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             cCCCccccccchhhcCCC----CCEEEEEecCCCHHHHHHHHHHHHHh
Confidence             23   22221  24543    38999999999989999988888864

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.98  E-value=2.1e-30  Score=258.97  Aligned_cols=335  Identities=16%  Similarity=0.116  Sum_probs=248.6

Q ss_pred             CCcEEecCCCC-----CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC------------CCC
Q 040741           56 GRPLYLDMQAT-----TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG------------ASP  118 (457)
Q Consensus        56 ~~~i~l~~~~~-----~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------------~~~  118 (457)
                      .+.++|+.+.+     .++++++.+++.+.+....      .+.|+  ......++++.++++++            +++
T Consensus        33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~  104 (416)
T 1bw0_A           33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE------CNGYF--PTVGSPEAREAVATWWRNSFVHKEELKSTIVK  104 (416)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC------SSSCC--CTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred             CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc------cCCcC--CCCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence            45688888764     4678999999999886421      01111  11235678888888887            677


Q ss_pred             CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCCC
Q 040741          119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRPD  196 (457)
Q Consensus       119 ~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~~  196 (457)
                      +++++|+|+|+|++++++++.    ++|++|++..++|+++...++..   |.+++.++.+.  ++.+|+++++++++++
T Consensus       105 ~~v~~~~g~~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~  177 (416)
T 1bw0_A          105 DNVVLCSGGSHGILMAITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDK  177 (416)
T ss_dssp             GGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred             ceEEEeCChHHHHHHHHHHhC----CCCCEEEEcCCCcHhHHHHHHHc---CcEEEEeecCcccCCCCCHHHHHHHhccC
Confidence            889999999999999999987    89999999999999988776655   99999998764  3568999999999999


Q ss_pred             ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----C----CcccCC---CCcccEEEeccccccCC
Q 040741          197 TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----K----IPVDVE---KWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~----~~~~~~---~~~~Di~~~s~~K~~g~  262 (457)
                      ++++++++++||+|.+.|   +++|.++|++||+++|+|++|+..    .    ....+.   ..+.++++.|++|.++.
T Consensus       178 ~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~  257 (416)
T 1bw0_A          178 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVV  257 (416)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSC
T ss_pred             CeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCC
Confidence            999999999999999999   899999999999999999999852    2    111222   12235788899998776


Q ss_pred             CC--ceEEEEecC--CCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741          263 KG--VGALYMRRR--PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       263 ~G--~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                      +|  +|+++++++  ..+++.......    ....++++.....++..+++.. .+.+++..++++++++++.+.|++ +
T Consensus       258 ~Glr~G~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  332 (416)
T 1bw0_A          258 PGWRLGWLLYVDPHGNGPSFLEGLKRV----GMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-C  332 (416)
T ss_dssp             GGGCCEEEEEECTTCSCHHHHHHHHHH----HHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             CCceEEEEEeeCchhhHHHHHHHHHHH----hccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh-C
Confidence            55  899999874  444333211100    0123366777777777777632 345788889999999999999998 7


Q ss_pred             CCeEEeCCCCCcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          338 DGVVVNGSMERRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      +++.+..+..   +.++.+.++.      .+..++...|   +||.+.+|..|..                   .+++||
T Consensus       333 ~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~-------------------~~~iRi  390 (416)
T 1bw0_A          333 IGLAPTMPRG---AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRL  390 (416)
T ss_dssp             TTEEECCCCB---TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEE
T ss_pred             CCCcccCCCe---eEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC-------------------CCeEEE
Confidence            8888765321   3444555542      2445565554   5999998875531                   279999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +++  ++++++++++++|.+++++.+
T Consensus       391 s~~--~~~e~l~~~l~~l~~~l~~~~  414 (416)
T 1bw0_A          391 TTT--RPVEVYREAVERIKAFCQRHA  414 (416)
T ss_dssp             ECC--SCHHHHHHHHHHHHHHHHHHB
T ss_pred             Eec--CCHHHHHHHHHHHHHHHHHhh
Confidence            996  579999999999999988754

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.98  E-value=2.3e-30  Score=255.96  Aligned_cols=328  Identities=16%  Similarity=0.175  Sum_probs=243.4

Q ss_pred             CcEEecCCCCC----CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           57 RPLYLDMQATT----PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        57 ~~i~l~~~~~~----~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      +..|+|+.++.    +.++++.+++.+.+... .+++.   ..+.+...+...++++.+++++|++  +.+++++||+|+
T Consensus        38 g~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~---~~~~~g~~~~~~~l~~~la~~~g~~--~~i~~~sGt~a~  112 (384)
T 1bs0_A           38 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGG---SGHVSGYSVVHQALEEELAEWLGYS--RALLFISGFAAN  112 (384)
T ss_dssp             TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCS---BTTTTCCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHH
T ss_pred             CceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCC---cCcccCChHHHHHHHHHHHHHhCCC--cEEEeCCcHHHH
Confidence            44577776643    47899999999998752 11211   1121122367889999999999985  477777789999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC---ceEEEEeccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD---TGLISVMAVNNE  208 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~---t~li~i~~~~~~  208 (457)
                      ..+++++.    ++|+.|+++.++|+++..+++..   |.+++.+|.     .|++++++++++.   +++|++++++||
T Consensus       113 ~~~~~~~~----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~np  180 (384)
T 1bs0_A          113 QAVIAAMM----AKEDRIAADRLSHASLLEAASLS---PSQLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSM  180 (384)
T ss_dssp             HHHHHHHC----CTTCEEEEETTCCHHHHHHHHTS---SSEEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTT
T ss_pred             HHHHHHhC----CCCcEEEEcccccHHHHHHHHHc---CCCEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            99999887    89999999999999988877654   999999884     3899999988653   789999999999


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcCCCc-----c-cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-----V-DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-----~-~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      +|.+.|+++|.++|++||+++|+|++|+.+...     + .....++|+++.|+||.+|++| |+++++++..+++....
T Consensus       181 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~  259 (384)
T 1bs0_A          181 DGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFA  259 (384)
T ss_dssp             TCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHC
T ss_pred             CCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchhhccC-cEEEeCHHHHHHHHHhc
Confidence            999999999999999999999999999876432     1 1111357999999999999887 99999876655544321


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-  360 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-  360 (457)
                      ..+     ....+++...+.++.++++...+ .+++..++++++++++.+.|++ + ++.+...    ...++.+.++. 
T Consensus       260 ~~~-----~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~----~~~~~~~~~~~~  328 (384)
T 1bs0_A          260 RHL-----IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD-L-PFTLADS----CSAIQPLIVGDN  328 (384)
T ss_dssp             HHH-----HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT-S-SCEECSC----CSSBCCEEEESH
T ss_pred             hhh-----hcCCCCCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh-c-CCcccCC----CCCEEEEEeCCH
Confidence            111     01125677777777778887664 5678889999999999999998 5 6776531    13333345542 


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .+..++...|  +||.+.++..+..                ....+++||+++..++++++++++++|+++
T Consensus       329 ~~~~~l~~~l~~~gi~v~~~~~~~~----------------~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          329 SRALQLAEKLRQQGCWVTAIRPPTV----------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             HHHHHHHHHHHHTTEECCEECTTSS----------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCcEEEeecCCCC----------------CCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            3345666665  6999887764311                113479999999988999999999999864

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.98  E-value=4.1e-31  Score=262.73  Aligned_cols=340  Identities=12%  Similarity=0.082  Sum_probs=242.4

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      ...+.|+.+++.+.+++.+++..+     .++.+ .+.++....+...++++++++++|.+  +.+++++|++|++++++
T Consensus        26 ~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~   97 (398)
T 2rfv_A           26 ALSTPIFQTSTFVFDSAEQGAARF-----ALEES-GYIYTRLGNPTTDALEKKLAVLERGE--AGLATASGISAITTTLL   97 (398)
T ss_dssp             CSSCCCCCCSBCCCSSHHHHHHHC-----------CCSBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHH
T ss_pred             CcCCCCcCCCccccCCHHHHHHhh-----cCCCC-CCceeCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHH
Confidence            445778888888888888887632     12221 23334434578899999999999986  47777789999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      ++.    ++|++|+++.+.|+++...++. +...|.+++.++.+     |++++++++++++++|++++++||+|.+.|+
T Consensus        98 ~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l  168 (398)
T 2rfv_A           98 TLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMRPETKVVYIETPANPTLSLVDI  168 (398)
T ss_dssp             HHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCCTTEEEEEEESSBTTTTBCCCH
T ss_pred             HHh----CCCCEEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCcccCH
Confidence            987    8999999999999999887642 25569999999875     8999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCcccccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGI  291 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~  291 (457)
                      ++|.++|++||+++|+|++|+.+...... ..+.|+++.|+||++| |.+  +|+++++++.++ .+.+...+.      
T Consensus       169 ~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~s~sK~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~------  241 (398)
T 2rfv_A          169 ETVAGIAHQQGALLVVDNTFMSPYCQQPL-QLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDI------  241 (398)
T ss_dssp             HHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHT------
T ss_pred             HHHHHHHHHcCCEEEEECCCcccccCCch-hhCCcEEEEeCcccccCCCCceEEEEEECHHHHHHHHHHHHHhC------
Confidence            99999999999999999999977653222 3578999999999765 444  499999876554 343333221      


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--------------EeCCCCCcccceEEEE
Q 040741          292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--------------VNGSMERRYIGNLNLS  357 (457)
Q Consensus       292 ~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~  357 (457)
                      +.++.++..+.++..+++.    +....++..++.+++.+.|++ .+.+.              +..+.....++++.+.
T Consensus       242 ~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~  316 (398)
T 2rfv_A          242 TGGCMSPFNAWLTLRGVKT----LGIRMERHCENALKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFE  316 (398)
T ss_dssp             TCCCCCHHHHHHHHHHHTT----HHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred             CCCCCCHHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence            1236666666666556543    344455566677777777776 44322              2111111246677777


Q ss_pred             Eccc--cchHHHhcc--cCeEecccCc------cCCCCCC--hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          358 FAYV--EGESLLMGL--KEVAVSSGSA------CTSASLE--PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       358 ~~~~--~~~~~~~~l--~~i~~~~g~~------~~~~~~~--~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      +++.  +...++..+  .++.++.|..      |.+....  ++.++...|+.+    +.|||+++..+++++|++++++
T Consensus       317 ~~~~~~~~~~l~~~~~~~~i~~~~G~~~~li~~~~~~~~~~~~~~~~~~~g~~~----~~iRls~~~~~~~~~i~~l~~a  392 (398)
T 2rfv_A          317 IAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPASMTHSPVAPEERLKAGITD----GLIRLSVGLEDPEDIINDLEHA  392 (398)
T ss_dssp             ETTHHHHHHHHHTTCSSSEECSCCSSSSCEEECHHHHTSSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHhCCcceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEecCCCHHHHHHHHHHH
Confidence            7642  234555555  4777777755      3221111  345566666643    8999999999999999999888


Q ss_pred             HHHH
Q 040741          426 TVKQ  429 (457)
Q Consensus       426 l~~~  429 (457)
                      |+++
T Consensus       393 l~~~  396 (398)
T 2rfv_A          393 IRKA  396 (398)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8753

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=99.97  E-value=1.5e-30  Score=261.26  Aligned_cols=339  Identities=17%  Similarity=0.202  Sum_probs=245.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhh--hHHHHHHHHHHHHHHHhC--CCCC-cEEEeCChHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGW--ESEVAVETARSQIADLIG--ASPK-EIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~la~~~g--~~~~-~i~~t~g~T~  129 (457)
                      .++|+|+.+.+. +.++++.+++.+.+....  +  ..+.|+.  ...+..+.+.+.+.+.+|  ++++ ++++|+|+|+
T Consensus        37 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~--~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~  112 (429)
T 1yiz_A           37 YKPLNLGQGFPDYHAPKYALNALAAAANSPD--P--LANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYE  112 (429)
T ss_dssp             HCCEECCSSSCSSCCCHHHHHHHHHHHTCSC--G--GGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred             CCEEEecCCCCCCCCCHHHHHHHHHHHhccc--c--CccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHH
Confidence            467899888776 678999999999886410  0  0111111  112333334444444457  4677 8999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC----------CCCCCHHHHHHhcCCCceE
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA----------DGIVNLDELRAAIRPDTGL  199 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~----------~~~~d~~~le~~i~~~t~l  199 (457)
                      |+.++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.          ++.+|+++|++++++++++
T Consensus       113 a~~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~  185 (429)
T 1yiz_A          113 ALYATIQGHV----DEGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKM  185 (429)
T ss_dssp             HHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCCTTEEE
T ss_pred             HHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHc---CCEEEEEeCCcccccccccccCcccCHHHHHHHhccCceE
Confidence            9999999987    88999999999999988876655   99999999875          3568999999999989999


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC------Ccc-cCC-CCcccEEEeccccccCCCC--ce
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK------IPV-DVE-KWNVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~------~~~-~~~-~~~~Di~~~s~~K~~g~~G--~G  266 (457)
                      |++++++||+|.+.|   +++|.++|++||+++|+|++|+...      .++ .+. ..+.|+++.|++|.+|++|  +|
T Consensus       186 v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~r~G  265 (429)
T 1yiz_A          186 IIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIG  265 (429)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGGCCE
T ss_pred             EEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEecchhccCCCCcceE
Confidence            999999999999986   8899999999999999999998422      122 122 3468999999999888777  89


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-----H--HHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-----A--KKEMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-----~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                      +++++++.++.+......       ...+.+.....++.++++.     .  .+.+++..++++++++++.+.|.+ + +
T Consensus       266 ~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g  336 (429)
T 1yiz_A          266 WAYGPEALLKNLQMVHQN-------CVYTCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-G  336 (429)
T ss_dssp             EEESCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-H-T
T ss_pred             EEEeCHHHHHHHHHHHhh-------cccCCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHHh-C-C
Confidence            999987665555433221       1235666667677777766     3  334788888999999999999998 4 6


Q ss_pred             eEEeCCCCCcccceEEEEEccc-------------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741          340 VVVNGSMERRYIGNLNLSFAYV-------------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAH  403 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~  403 (457)
                      +.+..+..   +.++.+.++..             +..++...|   +||.+.+|..|.....            .....
T Consensus       337 ~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~------------~~~~~  401 (429)
T 1yiz_A          337 MNPTVPQG---GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN------------KHLGE  401 (429)
T ss_dssp             CEEEECSB---SSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGG------------GGGTT
T ss_pred             CcccCCCc---ceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcc------------cCCCC
Confidence            76654321   34555566532             334565544   5999998865532100            00124


Q ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          404 TSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       404 ~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++|||+++.  ++++|++++++|+++++
T Consensus       402 ~~iRis~~~--~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          402 DFVRYCFFK--KDENLQKAAEILRKWKG  427 (429)
T ss_dssp             TEEEEECCS--CHHHHHHHHHHHHHHSC
T ss_pred             CeEEEEecC--CHHHHHHHHHHHHHhcc
Confidence            799999984  89999999999988753

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.97  E-value=2e-30  Score=257.64  Aligned_cols=337  Identities=10%  Similarity=0.051  Sum_probs=243.6

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNV  133 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~  133 (457)
                      +.++|+.+.+. ++++++.+++.+.+....       ..|+....+..+.+.+.+.+.+|  ++++++++|+|+|+|+.+
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~  104 (399)
T 1c7n_A           32 EVVPLSVADMEFKNPPELIEGLKKYLDETV-------LGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFN  104 (399)
T ss_dssp             TCCCCCSSSCSSCCCHHHHHHHHHHHHHCC-------CSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHH
T ss_pred             CceeeeecCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCcHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHH
Confidence            56777776654 568999999999886421       11111112333334444444457  567789999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCC--CCCHHHHHHhcC-CCceEEEEecccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADG--IVNLDELRAAIR-PDTGLISVMAVNNEI  209 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~--~~d~~~le~~i~-~~t~li~i~~~~~~~  209 (457)
                      +++++.    ++|++|++..+.|.++...++..   |.+++.++.+ .+|  .+|+++++++++ +++++|++++++||+
T Consensus       105 ~~~~l~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~npt  177 (399)
T 1c7n_A          105 AVREFT----KPGDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHNPV  177 (399)
T ss_dssp             HHHHHC----CTTCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBTTT
T ss_pred             HHHHhc----CCCCEEEEcCCCcHhHHHHHHHc---CCEEEecccccCCCCEEEcHHHHHHHhccCCCcEEEEcCCCCCC
Confidence            999987    88999999999999988776654   9999998875 333  489999999998 789999999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCC-----CcccEEEeccccccCCCC--ceEEEEec-CC
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEK-----WNVSLMSLSGHKIYGPKG--VGALYMRR-RP  274 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~-----~~~Di~~~s~~K~~g~~G--~G~l~~~~-~~  274 (457)
                      |.+.|   +++|+++|++||+++|+|++|+....    ..++..     .+.++++.|++|.+|++|  +|++++++ +.
T Consensus       178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~  257 (399)
T 1c7n_A          178 GRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDI  257 (399)
T ss_dssp             TBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHH
T ss_pred             CcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhccccchheEEEEECCHHH
Confidence            99999   99999999999999999999986322    222222     245688999999887555  79999874 35


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      .+++......+      ..++++.....++.++++...+.+++..++++++++++.+.|++.+|++.+..+.   .+.++
T Consensus       258 ~~~l~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~---~~~~~  328 (399)
T 1c7n_A          258 RERFTKSRDAT------SGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIE---GTYLQ  328 (399)
T ss_dssp             HHHHHHHHHHT------TCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCS---BSSEE
T ss_pred             HHHHHHHHhhc------ccCCCCHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhhCCCCeEecCC---ceEEE
Confidence            55554433221      1235677777777667765444578888899999999999998645677655432   12233


Q ss_pred             EEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          355 NLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       355 ~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      .+.++.  .+..++...|   +||.+.+|..|.+                 ...+++||+++..  ++++++++++|+++
T Consensus       329 ~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~-----------------~~~~~iRis~~~~--~~~l~~~l~~l~~~  389 (399)
T 1c7n_A          329 WIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLAAP--SSVIQESLERLNKA  389 (399)
T ss_dssp             EEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECCSC--HHHHHHHHHHHHHH
T ss_pred             EEEcccCCCCHHHHHHHHHHhCCEEEeCccccCC-----------------CCCCeEEEEeccC--HHHHHHHHHHHHHH
Confidence            456653  3556666665   4899988876542                 1237999999863  79999999999999


Q ss_pred             HHHHHh
Q 040741          430 VEKLRE  435 (457)
Q Consensus       430 ~~~~~~  435 (457)
                      ++++++
T Consensus       390 l~~~~~  395 (399)
T 1c7n_A          390 LKDLKN  395 (399)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            988754

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=6.4e-31  Score=263.65  Aligned_cols=342  Identities=13%  Similarity=0.107  Sum_probs=246.0

Q ss_pred             CCcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeC
Q 040741           56 GRPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G---ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~i~~t~  125 (457)
                      .+.|.|..+.+.   ..++++.+++.+.+......      ..+|.......++++.+++++    |   ++++++++|+
T Consensus        43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~------~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~  116 (425)
T 1vp4_A           43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHY------TLQYSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV  116 (425)
T ss_dssp             TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHH------HTSCCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred             CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchh------hcCCCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence            455666554433   25688999998887642100      001111123456667777776    8   6677899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC--------Cc
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP--------DT  197 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~--------~t  197 (457)
                      |+|+|+.++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++ +|++++++++++        ++
T Consensus       117 G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~  188 (425)
T 1vp4_A          117 GSQQALDLIGKLFL----DDESYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQV  188 (425)
T ss_dssp             HHHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGE
T ss_pred             cHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCc
Confidence            99999999999987    89999999999999988776654   9999999987665 899999999876        78


Q ss_pred             eEE-EEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---CCCcccEEEeccccccCCCC--
Q 040741          198 GLI-SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---EKWNVSLMSLSGHKIYGPKG--  264 (457)
Q Consensus       198 ~li-~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~~~~~Di~~~s~~K~~g~~G--  264 (457)
                      ++| ++++++||+|.+.|   +++|.++|++||+++|+|++|+.+..    ...+   ...+.++++.|++|.+| +|  
T Consensus       189 ~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r  267 (425)
T 1vp4_A          189 KFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLR  267 (425)
T ss_dssp             EEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGC
T ss_pred             eEEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccc
Confidence            887 57999999999987   56899999999999999999986432    1122   12246788999999888 56  


Q ss_pred             ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCC---C
Q 040741          265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLD---G  339 (457)
Q Consensus       265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~---~  339 (457)
                      +|+++++++..+++......       ...+.+.....++..+++..  .+.+++..++++++++++.+.|++.++   +
T Consensus       268 ~G~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g  340 (425)
T 1vp4_A          268 IGMVAGSKEFIRKIVQAKQS-------ADLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPG  340 (425)
T ss_dssp             EEEEECCHHHHHHHHHHHHH-------HHSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTT
T ss_pred             eEEEeeCHHHHHHHHHHhhh-------hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            79999987665555433221       11244666666666677653  345788888899999999999987335   5


Q ss_pred             eEEeCCCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCH
Q 040741          340 VVVNGSMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTE  416 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~  416 (457)
                      +.+..+..   +.++.+.++ +.+..++...|  +||.+.+|..|.+.               ....++|||+++.. ++
T Consensus       341 ~~~~~~~~---g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~---------------~~~~~~iRis~~~~-~~  401 (425)
T 1vp4_A          341 VKWVKSEG---GLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCLP-PD  401 (425)
T ss_dssp             CEECCCSB---SSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSSS-CH
T ss_pred             eEEecCCc---cEEEEEEcCCCCCHHHHHHHHHHCCCEEECchhhcCC---------------CCCCCeEEEEeCCC-CH
Confidence            77754321   345556665 23455566655  69999988766431               11237999999874 79


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCh
Q 040741          417 AEVDRAIELTVKQVEKLREMSP  438 (457)
Q Consensus       417 edid~~~~~l~~~~~~~~~~~~  438 (457)
                      +++++++++|+++++++.+..|
T Consensus       402 e~i~~~l~~l~~~l~~~~~~~~  423 (425)
T 1vp4_A          402 EKIVEGIKRLREVVLEYGKEKH  423 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999988765443

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.97  E-value=1.7e-30  Score=258.31  Aligned_cols=337  Identities=14%  Similarity=0.103  Sum_probs=227.7

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      -.++.++++..+++.+++..     ++++.+ .+.+++...+...++++.+++++|.+  +.+++++||+|++++++++.
T Consensus        30 ~p~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~r~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~a~~~~l~~~~  101 (398)
T 1gc0_A           30 PPVYQTATFTFPTVEYGAAC-----FAGEQA-GHFYSRISNPTLNLLEARMASLEGGE--AGLALASGMGAITSTLWTLL  101 (398)
T ss_dssp             CCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC
T ss_pred             CCccCCCccccCCHHHHHHh-----hcCCcC-CCcccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh
Confidence            45666777777777776652     233322 34445445578999999999999986  47777788999999999987


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                          ++|++|+++.+.|.++...++.+ ...|+++++++.+     |++++++++++++++|++++++||+|.+.|+++|
T Consensus       102 ----~~gd~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i  172 (398)
T 1gc0_A          102 ----RPGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGV  172 (398)
T ss_dssp             ----CTTCEEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHH
T ss_pred             ----cCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCcccccHHHH
Confidence                79999999999999998877543 5669999999865     8999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCccccccccC
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGIRSG  294 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~  294 (457)
                      .++|++||+++|+|++|+.+...... ..++|+++.|+||++| +.+  +|+++++++.+. .+.+...+      +..+
T Consensus       173 ~~l~~~~~~~li~D~~~~~~~~~~~~-~~~~d~~~~S~sK~~~~~~~~~~G~l~~~~~~~~~~~~~~~~~------~~~~  245 (398)
T 1gc0_A          173 AKIARKHGATVVVDNTYCTPYLQRPL-ELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKD------MTGA  245 (398)
T ss_dssp             HHHHGGGTCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHH------HTCC
T ss_pred             HHHHHHcCCEEEEECCCcccccCCch-hhCceEEEECCccccCCCCCCeEEEEEEChHHHHHHHHHHhhc------cCCC
Confidence            99999999999999999876543322 3578999999999766 443  599998875443 33332221      0224


Q ss_pred             CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--------------EeCCCCCcccceEEEEEcc
Q 040741          295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--------------VNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       295 t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~  360 (457)
                      +.++..++++..+++    .+....++..++.+++.+.|.+ ++.+.              +.++.....++++.+.+++
T Consensus       246 ~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  320 (398)
T 1gc0_A          246 VLSPHDAALLMRGIK----TLNLRMDRHCANAQVLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG  320 (398)
T ss_dssp             CCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETT
T ss_pred             CCCHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHhc-CCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC
Confidence            566665555544443    3455566677777777777776 55432              2222112357777777764


Q ss_pred             cc--chHHHhccc--CeEecccCc------cCC--CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          361 VE--GESLLMGLK--EVAVSSGSA------CTS--ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       361 ~~--~~~~~~~l~--~i~~~~g~~------~~~--~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ..  ...++..+.  .+.+..|+.      |++  ....++.++...|+++    +.|||+++..+++++|+.+.++|++
T Consensus       321 ~~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~~~~~~~i~~l~~al~~  396 (398)
T 1gc0_A          321 GIGAGRRFMNALQLFSRAVSLGDAESLAQHPASMTHSSYTPEERAHYGISE----GLVRLSVGLEDIDDLLADVQQALKA  396 (398)
T ss_dssp             HHHHHHHHHHHCSSSEECSCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCcCCHHHHHHHHHHHHHh
Confidence            21  223333331  222333543      332  2234677788888764    8999999999999999999988876


Q ss_pred             H
Q 040741          429 Q  429 (457)
Q Consensus       429 ~  429 (457)
                      +
T Consensus       397 ~  397 (398)
T 1gc0_A          397 S  397 (398)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=99.97  E-value=2.2e-30  Score=261.35  Aligned_cols=338  Identities=12%  Similarity=0.123  Sum_probs=245.2

Q ss_pred             CCcEEecCCCCCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CC-CCCcEEEeCCh
Q 040741           56 GRPLYLDMQATTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GA-SPKEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~-~~~~i~~t~g~  127 (457)
                      .+.|.|..+.+.+   +++++.+++.+.+....      ....+|.......++++.+++++    |. +++++++|+|+
T Consensus        76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~------~~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~  149 (448)
T 3aow_A           76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYA------DKALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGS  149 (448)
T ss_dssp             SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSH------HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSH
T ss_pred             CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhh------HHHhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcH
Confidence            4567776555442   56788888888876421      00011111123456777777777    98 67789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----C--CceEE-
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----P--DTGLI-  200 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~--~t~li-  200 (457)
                      |+|+.++++++.    ++||+|++..+.|.++...++..   |.+++.++.+.++ +|+++|+++++    +  ++++| 
T Consensus       150 ~~al~~~~~~l~----~~Gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~  221 (448)
T 3aow_A          150 QQALDLIGRVFL----NPGDIVVVEAPTYLAALQAFNFY---EPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVY  221 (448)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHc----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEE
Confidence            999999999997    89999999999999988776654   9999999987665 89999999997    6  78887 


Q ss_pred             EEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc---cCCCCcccEEEeccccccCCCC--ceEE
Q 040741          201 SVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV---DVEKWNVSLMSLSGHKIYGPKG--VGAL  268 (457)
Q Consensus       201 ~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~---~~~~~~~Di~~~s~~K~~g~~G--~G~l  268 (457)
                      ++++++||+|.+.|   +++|.++|++||++||+|++|+.+..    ..   .+...+.++++.|++|.+| +|  +|++
T Consensus       222 ~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v  300 (448)
T 3aow_A          222 TVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWM  300 (448)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEE
T ss_pred             ECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEE
Confidence            57899999999988   56899999999999999999986432    11   2222346789999999888 55  8999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCC-CeEEeCC
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLD-GVVVNGS  345 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~  345 (457)
                      +++++.++++.......      . .+.+.....++..+++..  .+.+++..++++++++++.+.|++.+| ++.+..+
T Consensus       301 ~~~~~l~~~l~~~~~~~------~-~~~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~p  373 (448)
T 3aow_A          301 VGDPGIIRKMEIAKQST------D-LCTNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTKP  373 (448)
T ss_dssp             EECHHHHHHHHHHHHHH------H-SSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC
T ss_pred             EeCHHHHHHHHHHHHHh------c-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeCC
Confidence            99877666554432211      1 234555566665666542  345778888888999999999987456 5776543


Q ss_pred             CCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          346 MERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       346 ~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                      ..   +.++.+.++ +.+..++...+  +||.+.+|..|.+.               ....+++||+++.. ++++|+++
T Consensus       374 ~~---g~~~~v~~~~~~~~~~l~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRls~~~~-~~e~i~~~  434 (448)
T 3aow_A          374 EG---GMFIWVTLPDGIDSKKMLERAIKKGVAYVPGEAFYAH---------------RDVKNTMRLNFTYV-DEDKIMEG  434 (448)
T ss_dssp             SB---SSEEEEECSTTCCHHHHHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSSS-CTHHHHHH
T ss_pred             Cc---cEEEEEEcCCCCCHHHHHHHHHHCCcEEEcchhhcCC---------------CCCCCEEEEEeCCC-CHHHHHHH
Confidence            21   344555654 24556676666  69999998766431               11237999999874 78999999


Q ss_pred             HHHHHHHHHHHH
Q 040741          423 IELTVKQVEKLR  434 (457)
Q Consensus       423 ~~~l~~~~~~~~  434 (457)
                      +++|++++++..
T Consensus       435 ~~~L~~~l~~~~  446 (448)
T 3aow_A          435 IKRLAETIKEEL  446 (448)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999997653

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=3.5e-30  Score=255.84  Aligned_cols=333  Identities=12%  Similarity=0.110  Sum_probs=236.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-----cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-----YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-----~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~  127 (457)
                      .+.+.|..+.+. ++++++.+++.+.+...     .+++.      .....+..+.+.+.+.+.+|  ++++++++|+|+
T Consensus        35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~y~~------~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~  108 (398)
T 3ele_A           35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDSVALHGYTS------AQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGA  108 (398)
T ss_dssp             GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCHHHHHSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSH
T ss_pred             CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCccccCCcCC------CCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCH
Confidence            355777776555 57899999999988651     11111      01112444555555555556  567789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |+|++++++++.    ++| ++|++..+.|.++...++..   |.+++.++.+. ++.+|++++++++++++++|+++++
T Consensus       109 ~~al~~~~~~l~----~~g~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p  181 (398)
T 3ele_A          109 AASLSICFRALT----SDAYDEFITIAPYFPEYKVFVNAA---GARLVEVPADTEHFQIDFDALEERINAHTRGVIINSP  181 (398)
T ss_dssp             HHHHHHHHHHHC----CSTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCTTTSSCCHHHHHHTCCTTEEEEEECSS
T ss_pred             HHHHHHHHHHHc----CCCCCEEEEeCCCchhhHHHHHHc---CCEEEEEecCCcCCcCCHHHHHHHhCcCCCEEEEcCC
Confidence            999999999997    899 99999999999988877665   99999999874 4589999999999999999999999


Q ss_pred             ccccccccC---hHHHHHHHHh------cCCcEEEehhhhcCC-----CcccCCCCcccEEEeccccccCCCC--ceEEE
Q 040741          206 NNEIGVIQP---MEEIGQICKE------FKIPFHTDAAQALGK-----IPVDVEKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~------~~v~li~D~a~~~g~-----~~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +||+|.+.|   +++|+++|++      ||+++|+|++|+...     .+......+.++++.|++|.+|.+|  +|+++
T Consensus       182 ~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~  261 (398)
T 3ele_A          182 NNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGERIGYVL  261 (398)
T ss_dssp             CTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTTCCEEEE
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcCCCccceeEEEE
Confidence            999999999   6677789999      999999999998532     2222233456799999999887554  89999


Q ss_pred             EecCCCcc--ccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC
Q 040741          270 MRRRPRIR--VEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME  347 (457)
Q Consensus       270 ~~~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  347 (457)
                      ++++....  +.......  .......+++.....++..+++   .  ....++++++++++.+.|++ + ++.+..+..
T Consensus       262 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~l~---~--~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~  332 (398)
T 3ele_A          262 VPDEVYDKAELYAAVCGA--GRALGYVCAPSLFQKMIVKCQG---A--TGDINAYKENRDLLYEGLTR-I-GYHCFKPDG  332 (398)
T ss_dssp             CCTTSTTHHHHHHHHHHH--HHHTTCCCSCHHHHHHHTTCTT---C--CCCHHHHHHHHHHHHHHHHH-H-TCCEECCSB
T ss_pred             EcchhhhHHHHHHHHHHH--hhhccccCCCHHHHHHHHHHhc---C--HHHHHHHHHHHHHHHHHHHH-c-CCeecCCCe
Confidence            98875542  11111000  0000112333333333322221   1  12457788889999999988 4 666654322


Q ss_pred             CcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          348 RRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                         +..+.+.++..+..++...+  +||.+.+|..|..                   .+++||+++  +++++|++++++
T Consensus       333 ---~~~~~~~~~~~~~~~~~~~l~~~gi~v~~g~~~~~-------------------~~~iRis~~--~~~e~i~~~l~~  388 (398)
T 3ele_A          333 ---AFYMFVKALEDDSNAFCEKAKEEDVLIVAADGFGC-------------------PGWVRISYC--VDREMIKHSMPA  388 (398)
T ss_dssp             ---SSEEEEECSSSCHHHHHHHHHTTTEECEESGGGTC-------------------TTEEEEECC--SCHHHHHHHHHH
T ss_pred             ---eEEEEEEcCCCCHHHHHHHHHHCCEEEeCccccCC-------------------CCeEEEEec--CCHHHHHHHHHH
Confidence               33355566544566666666  6999999876642                   279999997  689999999999


Q ss_pred             HHHHHHHHH
Q 040741          426 TVKQVEKLR  434 (457)
Q Consensus       426 l~~~~~~~~  434 (457)
                      |++++++++
T Consensus       389 l~~~l~~~~  397 (398)
T 3ele_A          389 FEKIYKKYN  397 (398)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhh
Confidence            999998764

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=1.1e-30  Score=257.52  Aligned_cols=328  Identities=13%  Similarity=0.090  Sum_probs=241.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCC--CC-cEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GAS--PK-EIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~~-~i~~t~g~  127 (457)
                      .+++.|..+.+. +.++++.+++.+.+....      .+.|+  ......++++.+++++    |.+  ++ ++++|+|+
T Consensus        25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~--~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~   96 (376)
T 2dou_A           25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYC--LKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGS   96 (376)
T ss_dssp             CCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCC--CHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSH
T ss_pred             CCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCC--CCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCc
Confidence            456777766555 467999999998875310      11112  1235667788888877    874  45 89999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccc
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNN  207 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~  207 (457)
                      |+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.+..+|++++++++++++++|++++++|
T Consensus        97 ~~a~~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~l~~p~n  169 (376)
T 2dou_A           97 QEGLAHLLLALT----EPEDLLLLPEVAYPSYFGAARVA---SLRTFLIPLREDGLADLKAVPEGVWREAKVLLLNYPNN  169 (376)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGSCHHHHHHEEEEEECSSCT
T ss_pred             HHHHHHHHHHhc----CCCCEEEECCCCcHhHHHHHHHc---CCEEEEeeCCCCCCCCHHHHHHhhccCceEEEECCCCC
Confidence            999999999987    88999999999999988777655   99999999844445899999999887889999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c---ccC-CCCcccEEEeccccccCCCC--ceEEEEecCCC
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P---VDV-EKWNVSLMSLSGHKIYGPKG--VGALYMRRRPR  275 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~---~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~  275 (457)
                      |+|.+.|   +++|.++|++||+++|+|++|+.+..   +   ... ...+.++++.|++|.+|.+|  +|+++++++..
T Consensus       170 ptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~  249 (376)
T 2dou_A          170 PTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGFRLGFALGSEEAL  249 (376)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGGCCEEEEECHHHH
T ss_pred             CcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCChhheeEEEecCHHHH
Confidence            9999988   67889999999999999999986432   1   122 12356788999999887555  79999887665


Q ss_pred             ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEE
Q 040741          276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN  355 (457)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  355 (457)
                      +++......       ...+.+.....++.++++...+.+++..++++++++++.+.|++ +  +.+..+.   .+.++.
T Consensus       250 ~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~---~~~~~~  316 (376)
T 2dou_A          250 ARLERVKGV-------IDFNQYAGVLRMGVEALKTPKEVVRGYARVYRERALGMAEALKG-V--LSLLPPR---ATMYLW  316 (376)
T ss_dssp             HHHHHHHHH-------HCCCSCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTT-T--SEECCCC---BSSEEE
T ss_pred             HHHHHHHHh-------cccCCCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHH-h--cCccCCC---eeEEEE
Confidence            555443221       11245666666666666543445788888999999999999988 5  5554322   133445


Q ss_pred             EEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          356 LSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       356 ~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.++ ..+..++...|  +||.+.+|..|..                 ...+++||+++.  +++++++++++|++++
T Consensus       317 ~~~~~~~~~~~~~~~l~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          317 GRLPEGVDDLEFGLRLVERGVALAPGRGFGP-----------------GGKGFVRIALVR--PLEELLEAAKRIREAL  375 (376)
T ss_dssp             EECCTTCCHHHHHHHHHHTTEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred             EECCCCCCHHHHHHHHHHCCEEEcCchhhCC-----------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence            5654 23445666666  6999998876532                 123799999985  7899999999998764

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.97  E-value=5.6e-30  Score=251.41  Aligned_cols=322  Identities=16%  Similarity=0.101  Sum_probs=239.2

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ++++|..+.+. ..++++.+++.+.+.....++.           ....++++.+++++|++++++++|+|+|+++++++
T Consensus        25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~   93 (364)
T 1lc5_A           25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPASWILAGNGETESIFTVA   93 (364)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred             ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHH
Confidence            46777766544 4789999999998754322211           13578999999999998889999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCC-HHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN-LDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d-~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      +++      ++++|++..+.|.++...++..   |.+++.++.+.+..++ ++++.+.+++++++|++++++||+|.+.|
T Consensus        94 ~~~------~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~v~i~~p~nptG~~~~  164 (364)
T 1lc5_A           94 SGL------KPRRAMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPE  164 (364)
T ss_dssp             HHH------CCSEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCC
T ss_pred             HHc------CCCeEEEeCCCcHHHHHHHHHc---CCeEEEEeCCcccccchhHHHHHhccCCCCEEEEeCCCCCCCCCCC
Confidence            877      3589999999999988877655   9999999987422234 47677778788899999999999999999


Q ss_pred             ---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC-CCCcccEEEeccccccCCCC--ceEEE-EecCCCcccccccc
Q 040741          215 ---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV-EKWNVSLMSLSGHKIYGPKG--VGALY-MRRRPRIRVEPLIN  283 (457)
Q Consensus       215 ---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~-~~~~~Di~~~s~~K~~g~~G--~G~l~-~~~~~~~~~~~~~~  283 (457)
                         +++|.++|++||+++|+|++|+.+..    .++. ...+.|+++.|+||.+|.+|  +|+++ ++++..+++.....
T Consensus       165 ~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~~l~~~~~  244 (364)
T 1lc5_A          165 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM  244 (364)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEEEEECCHHHHHHHHHhCC
Confidence               89999999999999999999985432    1222 33467899999999888555  79999 87766555544321


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                               ..+.+...+.++..+++. .+.+++..++++++++++.+.|++ +|++.+..+ .   ..++.+.++. +.
T Consensus       245 ---------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~-~---g~~~~~~~~~-~~  308 (364)
T 1lc5_A          245 ---------PWSVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPG-R---ANYLLLRCER-ED  308 (364)
T ss_dssp             ---------TTCSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCC-S---SSEEEEEESC-TT
T ss_pred             ---------CCCCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHhc-CCCCEECCC-C---CeEEEEECCC-cH
Confidence                     125666666666666654 335788888899999999999998 788887642 2   3445555543 23


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .++...|  +||.+.+|..|..                 ...+++||+++   +.+|+++++++|++.+++++
T Consensus       309 ~~l~~~l~~~gi~v~~g~~~~~-----------------~~~~~iRis~~---~~~~~~~l~~~l~~~~~~~~  361 (364)
T 1lc5_A          309 IDLQRRLLTQRILIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVLTGIA  361 (364)
T ss_dssp             CCHHHHHHTTTEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHCCcEEeeCcccCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHHhhccc
Confidence            3555555  6999998876532                 12379999986   58999999999999887664

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.97  E-value=2.1e-30  Score=259.66  Aligned_cols=309  Identities=14%  Similarity=0.123  Sum_probs=235.4

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G  170 (457)
                      .|.|++...+...++++++++++|.+  +.+++++|++|++++++++.    ++|++|+++.+.|.++...+. .++..|
T Consensus       105 ~~~y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G  178 (445)
T 1qgn_A          105 SFEYGRYGNPTTVVLEEKISALEGAE--STLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  178 (445)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcC
Confidence            34555555678999999999999986  35566667799999999887    789999999999998877655 345669


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCCCc-eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRPDT-GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~~t-~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      +++++++.+     |+++++++|+++| ++|++++++||+|.+.|+++|.++|+++|+++|+|++|+.+... .....++
T Consensus       179 ~~v~~v~~~-----d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-~~~~~g~  252 (445)
T 1qgn_A          179 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-KALALGA  252 (445)
T ss_dssp             CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CTTTTTC
T ss_pred             CEEEEeCCC-----CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-CccccCC
Confidence            999999875     8999999999999 99999999999999999999999999999999999999876543 2335689


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++.|+||++|+.|   +|+++++++.++++......       ..+++++...+.+..++    +.+..+.++..+++
T Consensus       253 Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~-------~g~~~~~~~a~~~~~~l----~~l~~r~~~~~~~a  321 (445)
T 1qgn_A          253 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI-------LGGALNPNAAYLIIRGM----KTLHLRVQQQNSTA  321 (445)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHG----GGHHHHHHHHHHHH
T ss_pred             EEEEECCcccccccccceEEEEEECHHHHHHHHHHHHH-------hCCCCCHHHHHHHHHhH----HHHHHHHHHHHHHH
Confidence            999999999888776   89999987665555432211       11234444433332333    23455566777788


Q ss_pred             HHHHHHHhhcCCCe-EEeCCC--C-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccCCCCC--
Q 040741          327 DRLLNGIKEKLDGV-VVNGSM--E-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACTSASL--  386 (457)
Q Consensus       327 ~~l~~~l~~~~~~~-~~~~~~--~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~--  386 (457)
                      +++.+.|++ .|++ .+..+.  .           ...++++.|.+++.  +...++..++  +++++.|..|+....  
T Consensus       322 ~~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~~~~~~~l~~l~~~~i~~s~G~~~sl~~~p~  400 (445)
T 1qgn_A          322 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA  400 (445)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred             HHHHHHHhc-CCCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCHHHHHHHHHhCCCceEeccCCCCceeeeccc
Confidence            899999998 7887 555431  1           12577888888753  2456677774  899999999875321  


Q ss_pred             ------ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          387 ------EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       387 ------~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                            .++.++.++|+.+    +.|||+++.    ||+|.+++.|+++++.
T Consensus       401 ~~~h~~~~~~~~~~~g~~~----~~iRlSvG~----Edid~li~~L~~al~~  444 (445)
T 1qgn_A          401 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS  444 (445)
T ss_dssp             HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCC----CeEEEEecc----CCHHHHHHHHHHHHhh
Confidence                  2456778888765    899999993    7899999999998864

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.97  E-value=1.4e-30  Score=258.78  Aligned_cols=334  Identities=15%  Similarity=0.115  Sum_probs=242.0

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEE-eCChHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIF-TSGATESNNVS  134 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~-t~g~T~a~~~a  134 (457)
                      +.+|+.+.++.++++++++++.++.....+.    .+. +....+..+++++++++++|+++ ++++| |+|||+|++++
T Consensus        39 ~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~  113 (398)
T 2fyf_A           39 PRDGRFGSGPSKVRLEQLQTLTTTAAALFGT----SHR-QAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAA  113 (398)
T ss_dssp             CSSCBCCSSSCCCCHHHHHGGGTTTTTTTTS----CTT-SHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHH
T ss_pred             cCCccccCCCCCCCHHHHHHHhhcCCCccCc----CcC-CHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHH
Confidence            3467777888899999999987742111110    121 23344678899999999999973 57998 99999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++++.    ++| .+++...+|.....  ..+...  |.+++.++.+.+...+.     .+++++++|++++++|++|.+
T Consensus       114 ~~~l~----~~g-v~~v~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~g~~~~~-----~i~~~~~~v~~~~~~nptG~~  181 (398)
T 2fyf_A          114 AFGLI----DKR-SLHLTYGEFSAKFA--SAVSKNPFVGEPIIITSDPGSAPEP-----QTDPSVDVIAWAHNETSTGVA  181 (398)
T ss_dssp             HHHTC----SSC-EEEEECSHHHHHHH--HHHHHCTTSCCCEEEECCTTCCCCC-----CCCTTCSEEEEESEETTTTEE
T ss_pred             HHHhc----CCC-eEEEeCCHHHHHHH--HHHHHhCCCCceEEEecCCCCCCCc-----cccCCCCEEEEeCcCCCccee
Confidence            99987    666 33334444432221  123333  78888998873322332     267889999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCC-CceEEEEecCCCccccc----------c
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPK-GVGALYMRRRPRIRVEP----------L  281 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~-G~G~l~~~~~~~~~~~~----------~  281 (457)
                      .|+++|.++   +|+++|+|++|+.+..++++.  ++|++++|+||++|++ |+|+++++++.++++..          .
T Consensus       182 ~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~--~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~~~~~  256 (398)
T 2fyf_A          182 VAVRRPEGS---DDALVVIDATSGAGGLPVDIA--ETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRWVPDF  256 (398)
T ss_dssp             CCCCCCTTC---C-CEEEEECTTTTTTSCCCGG--GCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCCCCGG
T ss_pred             cchHHhhhh---cCCeEEEEeccccCCcccCcc--cCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCCCCcE
Confidence            999998877   899999999999998876654  4899999999988866 69999999876655522          1


Q ss_pred             ccCCccc----cccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeC-CCCCcccceE
Q 040741          282 INGGGQE----RGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNG-SMERRYIGNL  354 (457)
Q Consensus       282 ~~~~~~~----~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~  354 (457)
                      ..++...    .+...++++...+.++.++++.+.+.  ++++.++.+++++++.+.|++ ++++.+.. .++...+.++
T Consensus       257 ~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~  335 (398)
T 2fyf_A          257 LSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQE-RPYTTPFVTDPGLRSQVVG  335 (398)
T ss_dssp             GCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHH-STTEEESCCSGGGBCSSEE
T ss_pred             EehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH-cCCceeccCChhhcCCcEE
Confidence            2111111    12445688888888888899876653  889999999999999999999 78888874 2222233366


Q ss_pred             EEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          355 NLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       355 ~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .+.++ +.+..++...|  +||.+.+|..                   ..+.+.|||+++.+++++|+++++++|+++++
T Consensus       336 ~~~~~~~~~~~~l~~~L~~~gI~v~~g~~-------------------~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~  396 (398)
T 2fyf_A          336 TIDFVDDVDAGTVAKILRANGIVDTEPYR-------------------KLGRNQLRVAMFPAVEPDDVSALTECVDWVVE  396 (398)
T ss_dssp             EEEECTTSCHHHHHHHHHHTTCBCCSCCT-------------------TTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHCCcEEecCcc-------------------cCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            67774 34566777766  5888766521                   01237999999999999999999999998875


Q ss_pred             H
Q 040741          432 K  432 (457)
Q Consensus       432 ~  432 (457)
                      +
T Consensus       397 ~  397 (398)
T 2fyf_A          397 R  397 (398)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.97  E-value=1.1e-30  Score=260.14  Aligned_cols=336  Identities=16%  Similarity=0.160  Sum_probs=242.2

Q ss_pred             CcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741           57 RPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA  127 (457)
Q Consensus        57 ~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~  127 (457)
                      ++|+|..+.+.   ..++++.+++.+.+.....    ... |+.  .....++++.+++++    |  ++++++++|+|+
T Consensus        35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~----~~~-y~~--~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~  107 (407)
T 2zc0_A           35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEPK----SVM-YTP--ANGIPELREELAAFLKKYDHLEVSPENIVITIGG  107 (407)
T ss_dssp             CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCGG----GGS-CCC--TTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHH
T ss_pred             ceEeCCCCCCCchhCCHHHHHHHHHHHHhhccc----ccc-CCC--CCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCH
Confidence            56777655443   2557899999988865210    011 111  123456777777777    8  567789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----C--CceEE-
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----P--DTGLI-  200 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~--~t~li-  200 (457)
                      |+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++ +|+++++++++    +  ++++| 
T Consensus       108 t~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~  179 (407)
T 2zc0_A          108 TGALDLLGRVLI----DPGDVVITENPSYINTLLAFEQL---GAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIY  179 (407)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHhc----CCCCEEEEeCCChHHHHHHHHHc---CCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEE
Confidence            999999999997    78999999999999887766544   9999999987665 89999999997    6  78886 


Q ss_pred             EEeccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCCc----ccC---CCCcccEEEeccccccCCC-CceEEE
Q 040741          201 SVMAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKIP----VDV---EKWNVSLMSLSGHKIYGPK-GVGALY  269 (457)
Q Consensus       201 ~i~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~~----~~~---~~~~~Di~~~s~~K~~g~~-G~G~l~  269 (457)
                      ++++++||+|.+.|.+   +|.++|++||+++|+|++|+.+...    ..+   ...+.++++.|++|.+|+. .+|+++
T Consensus       180 ~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~  259 (407)
T 2zc0_A          180 TIPTGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGFRIGWII  259 (407)
T ss_dssp             ECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTSCCEEEE
T ss_pred             ECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCcceEEEe
Confidence            5789999999999976   8999999999999999999865321    112   1224567889999988832 289999


Q ss_pred             EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--H-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--K-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      ++++..+++......+.       ...+.....++..+++..  . ..+++..++++++++++.+.|++.++++.+..+.
T Consensus       260 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  332 (407)
T 2zc0_A          260 AEGEILKKVLMQKQPID-------FCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTKPI  332 (407)
T ss_dssp             CCHHHHHHHHHHHTTTT-------SSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCCCS
T ss_pred             cCHHHHHHHHHHHHhhc-------CCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEecCC
Confidence            98766555544332211       123555555555566543  3 4577888889999999999998744666554422


Q ss_pred             CCcccceEEEEEc-cccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          347 ERRYIGNLNLSFA-YVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       347 ~~~~~~~~~~~~~-~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                         .+.++.+.++ +.+..++...|  + ||.+.+|..|...               ....+++||+++.. ++++++++
T Consensus       333 ---~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~~-~~~~i~~~  393 (407)
T 2zc0_A          333 ---AGMFVMFFLPEGADGISFANELMEREGVVVVPGKPFYTD---------------ESGKNAIRLNFSRP-SKEEIPIG  393 (407)
T ss_dssp             ---BSSEEEEECSTTCCHHHHHHHHHHHTCEECBCSGGGCSS---------------SCCTTEEEEECSSS-CTTHHHHH
T ss_pred             ---CcEEEEEEcCCCCCHHHHHHHHHHhCCeEEECchhccCC---------------CCCCCeEEEEeCCC-CHHHHHHH
Confidence               1345555664 34556777766  5 9999998766431               01237999999876 79999999


Q ss_pred             HHHHHHHHHHH
Q 040741          423 IELTVKQVEKL  433 (457)
Q Consensus       423 ~~~l~~~~~~~  433 (457)
                      +++|+++++++
T Consensus       394 ~~~l~~~l~~~  404 (407)
T 2zc0_A          394 IKKLAKLYKEK  404 (407)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=6.8e-30  Score=253.50  Aligned_cols=336  Identities=13%  Similarity=0.065  Sum_probs=245.9

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC---CCC-cEEEeCChHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA---SPK-EIIFTSGATE  129 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~---~~~-~i~~t~g~T~  129 (457)
                      +.++|.|..+.+. +.++++.+++.+.+....+++...      ...+..+.+.+.+++.+|.   +++ ++++|+|+|+
T Consensus        29 g~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~------g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~  102 (396)
T 3jtx_A           29 GMEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTA------GLPELRQACANWLKRRYDGLTVDADNEILPVLGSRE  102 (396)
T ss_dssp             TCCCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCTT------CCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHH
T ss_pred             CCCeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCCC------CcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHH
Confidence            3567888777665 678999999999886554443321      1124555566666666674   477 8999999999


Q ss_pred             HHHHHHHHhhhhhcCCC-----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC-CCCHHHHHHhcCCCceEEEEe
Q 040741          130 SNNVSIKGVMHFYKDKK-----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG-IVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~-~~d~~~le~~i~~~t~li~i~  203 (457)
                      |++++++++.    ++|     ++|++..+.|.++...++..   |.+++.++.+.++ .+|++++++++++++++|+++
T Consensus       103 al~~~~~~~~----~~g~~~~~d~vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~g~~~d~~~l~~~~~~~~~~v~l~  175 (396)
T 3jtx_A          103 ALFSFVQTVL----NPVSDGIKPAIVSPNPFYQIYEGATLLG---GGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVC  175 (396)
T ss_dssp             HHHHHHHHHC----CC---CCCCEEEEEESCCHHHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHTEEEEEEE
T ss_pred             HHHHHHHHHh----CCCCccCCCEEEEcCCCcHhHHHHHHHc---CCEEEEeecCCCCCccCHHHHHHhhccCcEEEEEE
Confidence            9999999998    675     79999999999888776665   9999999986444 689999999998899999999


Q ss_pred             ccccccccccChH---HHHHHHHhcCCcEEEehhhhcCCC----cccC--------CCCcccEEEeccccccCCCC--ce
Q 040741          204 AVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQALGKI----PVDV--------EKWNVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       204 ~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~~~g~~----~~~~--------~~~~~Di~~~s~~K~~g~~G--~G  266 (457)
                      +++||+|.+.|.+   +|+++|++||+++|+|++|+....    +...        ...+.++++.|++|.+|.+|  +|
T Consensus       176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G  255 (396)
T 3jtx_A          176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGLRSG  255 (396)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGGCCE
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEeccccccCCcccceE
Confidence            9999999999855   499999999999999999985322    2221        02467899999999776554  89


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +++.+++..+++.....       ...++++...+.++.++++. .+.+.+..++++++++++.+.|.+ ..  .+.. +
T Consensus       256 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~~-~~--~~~~-~  323 (396)
T 3jtx_A          256 FVAGDAELLKNFLLYRT-------YHGSAMSIPVQRASIAAWDD-EQHVIDNRRLYQEKFERVIPILQQ-VF--DVKL-P  323 (396)
T ss_dssp             EEEECHHHHHHHHHHHH-------HHTCCCCHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHTT-TS--CCCC-C
T ss_pred             EEEeCHHHHHHHHHHHh-------hcccCCCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHh-cC--CccC-C
Confidence            99988766555543322       12236677777777666653 345788888999999999999988 42  2222 1


Q ss_pred             CCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          347 ERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                      .  .+.++.+.++..+..++...|   +||.+.+|..|.....           ......+++||+++.  +++++++++
T Consensus       324 ~--~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~~-----------~~~~~~~~iRis~~~--~~~~i~~~l  388 (396)
T 3jtx_A          324 D--ASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTE-----------QGNPGEGYVRIALVA--DVATCVKAA  388 (396)
T ss_dssp             S--SSSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCCCCT-----------TCCTTTTEEEEECCS--CHHHHHHHH
T ss_pred             C--eeEEEEEECCCCCHHHHHHHHHHHCCEEEeCChHhCCccc-----------ccCCCCCeEEEEEcC--CHHHHHHHH
Confidence            1  144555566654556666666   4999999988764210           112235899999986  899999999


Q ss_pred             HHHHHHH
Q 040741          424 ELTVKQV  430 (457)
Q Consensus       424 ~~l~~~~  430 (457)
                      ++|++++
T Consensus       389 ~~l~~~l  395 (396)
T 3jtx_A          389 EDIVSLY  395 (396)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9998764

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=1.5e-30  Score=260.52  Aligned_cols=338  Identities=14%  Similarity=0.146  Sum_probs=245.0

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhcc---CCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCC-CcEEEeCChH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRY---GNPHSRTHLFGWESEVAVETARSQIADLIG--ASP-KEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~-~~i~~t~g~T  128 (457)
                      .+.|.|..+.+. ++++++.+++.+.+....   +++..      ....+..+.+.+.+.+.+|  +++ +++++|+|||
T Consensus        28 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~------~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~  101 (422)
T 3fvs_A           28 HDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTKT------FGYPPLTKILASFFGELLGQEIDPLRNVLVTVGGY  101 (422)
T ss_dssp             SCCEECCCSSCSSCCCHHHHHHHHHHHHSCGGGGSCCCT------TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHH
T ss_pred             CCceEeCCCCCCCCCCHHHHHHHHHHHhCCCccCCCCCC------CCCHHHHHHHHHHHHHhhCCCCCCCCcEEEECChH
Confidence            467888887766 578999999999887521   11111      1112344444445554455  445 5799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC----C--------CCCCHHHHHHhcCCC
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA----D--------GIVNLDELRAAIRPD  196 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~----~--------~~~d~~~le~~i~~~  196 (457)
                      +|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.    +        +.+|+++++++++++
T Consensus       102 ~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~~~  174 (422)
T 3fvs_A          102 GALFTAFQALV----DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFTSR  174 (422)
T ss_dssp             HHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCCTT
T ss_pred             HHHHHHHHHHc----CCCCEEEEcCCCchhhHHHHHHc---CCEEEEEecccccccccccccccCCCCCHHHHHhhcCCC
Confidence            99999999987    89999999999999988777665   99999999875    3        368999999999999


Q ss_pred             ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC----CCcccCC----CCcccEEEeccccccCCCC-
Q 040741          197 TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG----KIPVDVE----KWNVSLMSLSGHKIYGPKG-  264 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g----~~~~~~~----~~~~Di~~~s~~K~~g~~G-  264 (457)
                      +++|++++++||+|.+.|   +++|+++|++||+++|+|++|+..    ..+..+.    ..+.++++.|++|.+|++| 
T Consensus       175 ~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~  254 (422)
T 3fvs_A          175 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW  254 (422)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG
T ss_pred             ceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEEecchhccCCccc
Confidence            999999999999999995   889999999999999999999852    2222221    1245688999999877554 


Q ss_pred             -ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          265 -VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-------AKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       265 -~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                       +|+++++++.+.++......       ...+.+.....++..+++.       ..+.+++..++++++++++.+.|++ 
T Consensus       255 r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-  326 (422)
T 3fvs_A          255 KVGWVLGPDHIMKHLRTVHQN-------SVFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQS-  326 (422)
T ss_dssp             CCEEEECCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             eEEEEEeCHHHHHHHHHHHhh-------ccCCCCcHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence             89999987665555433221       1235666777777667764       2234788889999999999999999 


Q ss_pred             CCCeEEeCCCCCcccceEEEEEccc----c----------chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          337 LDGVVVNGSMERRYIGNLNLSFAYV----E----------GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~----~----------~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      + ++.+..+..   ..++.+.+...    +          ..++...+   +||.+.+|..|....            ..
T Consensus       327 ~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~------------~~  390 (422)
T 3fvs_A          327 V-GLKPIIPQG---SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVP------------HQ  390 (422)
T ss_dssp             T-TCEEEBCSB---SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHH------------HH
T ss_pred             c-CCeecCCCe---eeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCc------------CC
Confidence            5 777665322   33344444321    1          23455543   599999998875410            01


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ....+++||+++.  ++++|++++++|++++++
T Consensus       391 ~~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~  421 (422)
T 3fvs_A          391 KHFDHYIRFCFVK--DEATLQAMDEKLRKWKVE  421 (422)
T ss_dssp             TTSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence            1235899999887  899999999999998764

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=1.6e-29  Score=248.71  Aligned_cols=317  Identities=14%  Similarity=0.094  Sum_probs=238.4

Q ss_pred             EEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH------hCCCCCcEEEeCChHHHH
Q 040741           59 LYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL------IGASPKEIIFTSGATESN  131 (457)
Q Consensus        59 i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~------~g~~~~~i~~t~g~T~a~  131 (457)
                      ++|+.+.+. +.++++.+++.+.+......    .+.|+..   ...++++.++++      ++++++++++|+|+++++
T Consensus        33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~~y~~~---~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al  105 (369)
T 3cq5_A           33 IRLNTNENPYPPSEALVADLVATVDKIATE----LNRYPER---DAVELRDELAAYITKQTGVAVTRDNLWAANGSNEIL  105 (369)
T ss_dssp             EECSSCCCCSCCCHHHHHHHHHHHHHHGGG----TTSCCCT---TCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHH
T ss_pred             eeccCCCCCCCCCHHHHHHHHHHHHhcccc----cccCCCc---cHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHH
Confidence            777776664 57899999999988652100    0111111   124666777776      456677899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G  210 (457)
                      +++++++.    ++|++|++..+.|+++...++..   |.+++.++.+.++.+|++++++++++ ++++|++++++||+|
T Consensus       106 ~~~~~~l~----~~gd~Vl~~~~~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG  178 (369)
T 3cq5_A          106 QQLLQAFG----GPGRTALGFQPSYSMHPILAKGT---HTEFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTG  178 (369)
T ss_dssp             HHHHHHHC----STTCEEEEEESSCTHHHHHHHHT---TCEEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTC
T ss_pred             HHHHHHhc----CCCCEEEEcCCChHHHHHHHHHc---CCEEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCC
Confidence            99999987    88999999999999988776655   99999999887778999999999987 889999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCc---ccC-CCCc-ccEEEeccccccCCCC--ceEEEEecCCCcccccccc
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIP---VDV-EKWN-VSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~-~~~~-~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~  283 (457)
                      .+.|++++.++|+.+++++|+|++|+.+...   ... ...+ .++++.|++|.+|.+|  +|+++++++..+++.....
T Consensus       179 ~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~~~~~~l~~~~~  258 (369)
T 3cq5_A          179 DVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVANPAFIDAVMLVRL  258 (369)
T ss_dssp             CCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEECTHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeCHHHHHHHHHcCC
Confidence            9999999999999999999999999876532   222 2334 6799999999887555  7999998765544443221


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                               ..+++.....++.++++. .+.+++..++++++++++.+.|++  +++.+... .   ..++.+.++ .+.
T Consensus       259 ---------~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~-~---~~~~~~~~~-~~~  321 (369)
T 3cq5_A          259 ---------PYHLSALSQAAAIVALRH-SADTLGTVEKLSVERVRVAARLEE--LGYAVVPS-E---SNFVFFGDF-SDQ  321 (369)
T ss_dssp             ---------TTCSCHHHHHHHHHHHHT-HHHHHTHHHHHHHHHHHHHHHHHH--HTCEEECC-S---SSEEEEECC-SSH
T ss_pred             ---------CCCCCHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHh--CCCEECCC-C---CeEEEEECC-CCH
Confidence                     124666666666666654 235778888999999999999988  47777632 2   344555554 355


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .++...|  +||.+.+|.                      ..+++||+++   +++|+++++++|+++++
T Consensus       322 ~~l~~~l~~~gi~v~~~~----------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          322 HAAWQAFLDRGVLIRDVG----------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             HHHHHHHHHTTEECBCCS----------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCEEEEECC----------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            6666666  688887651                      0278999998   68999999999988764

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=6.9e-30  Score=253.08  Aligned_cols=332  Identities=9%  Similarity=0.090  Sum_probs=240.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHH-HHHHHHHH----hC--CCCCcEEEeCCh
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVET-ARSQIADL----IG--ASPKEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~la~~----~g--~~~~~i~~t~g~  127 (457)
                      .++++|..+.+. +.++++.+++.+.+....       ..|+..    ..+ +++.++++    .|  ++++++++|+|+
T Consensus        28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~----~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~   96 (390)
T 1d2f_A           28 ADLLPFTISDMDFATAPCIIEALNQRLMHGV-------FGYSRW----KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSV   96 (390)
T ss_dssp             --CEECCSSSCSSCCCHHHHHHHHHHHTTCC-------CCCCCS----CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCH
T ss_pred             CCeeEeeecCCCCCCCHHHHHHHHHHHhCCC-------CCCCCC----ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCH
Confidence            356788776654 578999999999885311       111111    234 55555555    46  667789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC---CCCHHHHHHhcCC-CceEEEEe
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG---IVNLDELRAAIRP-DTGLISVM  203 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~---~~d~~~le~~i~~-~t~li~i~  203 (457)
                      |+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.++   .+|++++++++++ ++++|+++
T Consensus        97 ~~al~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~  169 (390)
T 1d2f_A           97 IYMVSELIRQWS----ETGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLC  169 (390)
T ss_dssp             HHHHHHHHHHSS----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEE
T ss_pred             HHHHHHHHHHhc----CCCCEEEEcCCCcHHHHHHHHHC---CCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEe
Confidence            999999999987    88999999999999988877655   9999999986432   4899999999986 78999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccCCCCc---ccEEEeccccccCCCC--ceEEEEe
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDVEKWN---VSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~~~~~---~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +++||+|.+.|   +++|+++|++||+++|+|++|+.+..    ..++....   .|. +.|++|.+|++|  +|+++++
T Consensus       170 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~~~G~r~G~~~~~  248 (390)
T 1d2f_A          170 SPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFNIPALTGAYGIIE  248 (390)
T ss_dssp             SSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHTCGGGCCEEEEEC
T ss_pred             CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhcccChhheEEEEC
Confidence            99999999988   78999999999999999999986432    22222221   266 899999887555  7999986


Q ss_pred             -cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          272 -RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       272 -~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                       ++..+++.....+     ....++++...+.++.++++...+.+++..++++++++++.+.|++.+|++.+..+..   
T Consensus       249 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~---  320 (390)
T 1d2f_A          249 NSSSRDAYLSALKG-----RDGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQS---  320 (390)
T ss_dssp             SHHHHHHHHHHHHT-----TSCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCSB---
T ss_pred             CHHHHHHHHHHHhh-----hcccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEecCCc---
Confidence             4444444433320     1122366777777777777654445788888999999999999987356776554321   


Q ss_pred             cceEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHH
Q 040741          351 IGNLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIEL  425 (457)
Q Consensus       351 ~~~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~  425 (457)
                      +.++.+.++.  .+..++...|   +||.+.+|..|..                 ...+++||+++.  +++++++++++
T Consensus       321 ~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~~Ris~~~--~~~~l~~~l~~  381 (390)
T 1d2f_A          321 TYLAWLDLRPLNIDDNALQKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAGC--PRSKLEKGVAG  381 (390)
T ss_dssp             CSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHHHHHHHH
T ss_pred             cEEEEEEccccCCCHHHHHHHHHHHcCEEeeCccccCC-----------------CCCCeEEEEecC--CHHHHHHHHHH
Confidence            2233455553  3556666655   4899998876632                 123799999997  58999999999


Q ss_pred             HHHHHHHH
Q 040741          426 TVKQVEKL  433 (457)
Q Consensus       426 l~~~~~~~  433 (457)
                      |+++++++
T Consensus       382 l~~~l~~~  389 (390)
T 1d2f_A          382 LINAIRAV  389 (390)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998764

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.97  E-value=1.7e-31  Score=263.15  Aligned_cols=335  Identities=14%  Similarity=0.107  Sum_probs=233.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK  146 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g  146 (457)
                      ++++++.+++.+.+.+.+       +    ...+...++++.+++++|.+  ++++++|||+|++++++++ .    ++|
T Consensus        14 ~~~~~~~~a~~~~~~~~~-------~----~~~~~~~~l~~~la~~~~~~--~~i~~~sgt~al~~~l~~l~~----~~g   76 (373)
T 3frk_A           14 EIEYEIKFKFEEIYKRNW-------F----ILGDEDKKFEQEFADYCNVN--YCIGCGNGLDALHLILKGYDI----GFG   76 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTC-------C----SSSHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred             CCCHHHHHHHHHHHHCCC-------c----cCCchHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcCC----CCc
Confidence            456788888888876531       1    11267889999999999986  5999999999999999998 5    889


Q ss_pred             CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741          147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF  225 (457)
Q Consensus       147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~  225 (457)
                      ++|+++.++|.++..+++..   |+++++++++ .++.+|++++++++++++++|+   ++|++|.+.|+++|.++|++|
T Consensus        77 d~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~---~~n~~G~~~~l~~i~~l~~~~  150 (373)
T 3frk_A           77 DEVIVPSNTFIATALAVSYT---GAKPIFVEPDIRTYNIDPSLIESAITEKTKAII---AVHLYGQPADMDEIKRIAKKY  150 (373)
T ss_dssp             CEEEEETTSCTHHHHHHHHH---SCEEEEECEETTTTEECGGGTGGGCCTTEEEEE---EECCTTCCCCHHHHHHHHHHH
T ss_pred             CEEEECCCCcHHHHHHHHHc---CCEEEEEeccccccCcCHHHHHHhcCCCCeEEE---EECCCcCcccHHHHHHHHHHc
Confidence            99999999999999887776   9999999988 5678999999999999998887   567899999999999999999


Q ss_pred             CCcEEEehhhhcCCCcccCCCCc--ccEEEeccc--cccCC-CCceEEEEecC-CCccccccccCCccccccccCCCCh-
Q 040741          226 KIPFHTDAAQALGKIPVDVEKWN--VSLMSLSGH--KIYGP-KGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPT-  298 (457)
Q Consensus       226 ~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~--K~~g~-~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~-  298 (457)
                      |+++|+|++|+.|.. ++....+  .|++++|++  |.+|+ ..+|+++.+++ ..+++.+...++.... +....... 
T Consensus       151 ~~~li~D~a~~~g~~-~~~~~~~~~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~g~~  228 (373)
T 3frk_A          151 NLKLIEDAAQAHGSL-YKGMKVGSLGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKK-YHHIYKGFN  228 (373)
T ss_dssp             TCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBT-TBCCSCCCB
T ss_pred             CCEEEEECCcccCCE-ECCEeccccccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccC-Ccccccccc
Confidence            999999999998876 4444444  689988865  97776 33577777653 3344444444332211 10000000 


Q ss_pred             hHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741          299 PLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV  375 (457)
Q Consensus       299 ~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~  375 (457)
                      ..+..+.+++... .+.+++..++.+++.+++.+.|.+ ++ +.+...+......+..+.+...+...+...|  +||.+
T Consensus       229 ~~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v  306 (373)
T 3frk_A          229 SRLDELQAGFLRVKLKYLDKWNEERRKIAQKYIAGINN-PN-VIIPVEADYAKHVWYTFVIRSEKRDELQKYLNNNGIGT  306 (373)
T ss_dssp             CCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHCCC-TT-EECCCCCTTEECCCSSEEEEESSHHHHHHHHHHTTBCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc-eEeccCCCCCceeeEEEEEEeCCHHHHHHHHHHCCCCc
Confidence            0111222233322 235678888899999999999988 66 6665433322233333334334566777777  68888


Q ss_pred             cccCccCCCCCChhHHHHHcCCCc-------cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          376 SSGSACTSASLEPSYVLRALGVDE-------DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~-------~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.+..+... ..|  ....++...       ....+.||++++..+|++|||+++++|++...+
T Consensus       307 ~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~~  367 (373)
T 3frk_A          307 LIHYPIPIH-LQQ--AYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKLE  367 (373)
T ss_dssp             BCSCSSCGG-GSG--GGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC--
T ss_pred             ccCcCCccc-cCh--HHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhhh
Confidence            866421110 011  112223211       123379999999999999999999999876644

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.97  E-value=1.7e-29  Score=252.18  Aligned_cols=309  Identities=13%  Similarity=0.090  Sum_probs=223.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      +....+...++++++++++|.+  ++++++|||+|++++++++.    ++|++|+++.++|.++...+.. ++..|++++
T Consensus        51 ~~~~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~al~~l~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~  124 (412)
T 2cb1_A           51 ARQKDPTAKALEERLKALEGAL--EAVVLASGQAATFAALLALL----RPGDEVVAAKGLFGQTIGLFGQVLSLMGVTVR  124 (412)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEETTCCHHHHHHHHHTTTTTTCEEE
T ss_pred             CCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEE
Confidence            3333467899999999999986  59999999999999999986    8999999999999988877654 455699999


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      +++.+      ++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.........+.|++++
T Consensus       125 ~~~~~------~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~~~di~~~  198 (412)
T 2cb1_A          125 YVDPE------PEAVREALSAKTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLAWGAHVVVE  198 (412)
T ss_dssp             EECSS------HHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGGGTCSEEEE
T ss_pred             EECCC------HHHHHHHhccCCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccccCCeEEEE
Confidence            99853      899999999999999999999999999999999999999999999999999873333333457899999


Q ss_pred             ccccccC-CCC-ceEEEEecCCCc-----ccc-ccccCC---------ccccccc------cC-CCChhHHHHHHHHHHH
Q 040741          255 SGHKIYG-PKG-VGALYMRRRPRI-----RVE-PLINGG---------GQERGIR------SG-TLPTPLIVGFGSACEI  310 (457)
Q Consensus       255 s~~K~~g-~~G-~G~l~~~~~~~~-----~~~-~~~~~~---------~~~~~~~------~~-t~~~~~~~al~~al~~  310 (457)
                      |+||+++ |.+ +|++++.++...     .+. +...+.         .....++      .| ..++...+.....+  
T Consensus       199 S~~K~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~l--  276 (412)
T 2cb1_A          199 SLTKWASGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLGLSLCGMALSPFNAYLLFQGL--  276 (412)
T ss_dssp             ETTTTTTCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHHTTTTCCCCCHHHHHHHHHHG--
T ss_pred             CCcccccCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHHHHhcCCCCChHHhHHHHcCC--
Confidence            9999664 554 688877663321     011 100000         0000000      11 11222221111111  


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEe-CCCC-------------CcccceEEEEEccccchHHHhcc--cCeE
Q 040741          311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVN-GSME-------------RRYIGNLNLSFAYVEGESLLMGL--KEVA  374 (457)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~~-------------~~~~~~~~~~~~~~~~~~~~~~l--~~i~  374 (457)
                        +.+....++..++++++.+.|.+ .+++.++ .+..             ...++++.+.+ + +.+.+...+  .+|.
T Consensus       277 --~~l~~~~~~~~~~~~~l~~~L~~-~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-~~~~~~~~l~~~~i~  351 (412)
T 2cb1_A          277 --ETVALRVARMSETARFLAERLQG-HPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-DLERASRFLGAIRLL  351 (412)
T ss_dssp             --GGHHHHHHHHHHHHHHHHHHHHT-CTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-SHHHHHHHHHHCSSE
T ss_pred             --chHHHHHHHHHHHHHHHHHHHHc-CCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-CHHHHHHHHHhCCee
Confidence              23456666777899999999998 7888643 3221             13577888888 5 555555555  5888


Q ss_pred             ecccC---------ccCCCCC--ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          375 VSSGS---------ACTSASL--EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       375 ~~~g~---------~~~~~~~--~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      + .++         +|++...  -|+.++.++|+.+    +.||++++.++++++|+.++++|++
T Consensus       352 ~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iR~s~g~~~~~~~i~~l~~al~~  411 (412)
T 2cb1_A          352 K-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTP----GLVRVSVGLEDPLDLLALFEEALEA  411 (412)
T ss_dssp             E-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred             e-ecccCCCcceeecCcccccccCCHHHHHhcCCCC----CeEEEEeccCCHHHHHHHHHHHHhh
Confidence            8 773         5655443  2667888888864    8999999999999999999998864

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.97  E-value=2.6e-30  Score=257.53  Aligned_cols=329  Identities=13%  Similarity=0.030  Sum_probs=243.1

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCC--C-CcEEEeC
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLI----GAS--P-KEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~--~-~~i~~t~  125 (457)
                      .++++|..+.+. ..++++.+++.+.+...  .+++.          .....++++.+++++    |.+  + +++++|+
T Consensus        47 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~  116 (404)
T 2o1b_A           47 LPLINMAVGIPDGPTPQGIIDHFQKALTIPENQKYGA----------FHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILY  116 (404)
T ss_dssp             SCCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEES
T ss_pred             CCEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCCCC----------CCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcC
Confidence            456788776665 46799999999887431  11111          012345666666666    864  3 6899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEec
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      |+|+|++++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.+ ..+|+++|++++++++++|++++
T Consensus       117 G~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~l~~  189 (404)
T 2o1b_A          117 GTKNGLVAVPTCVI----NPGDYVLLPDPGYTDYLAGVLLA---DGKPVPLNLEPPHYLPDWSKVDSQIIDKTKLIYLTY  189 (404)
T ss_dssp             SHHHHHHHHHHHHC----CTTCEEEEEESCCSSHHHHHHHT---TCEEEEEECCTTTCCCCGGGSCHHHHHHEEEEEECS
T ss_pred             CcHHHHHHHHHHhc----CCCCEEEEcCCCchhHHHHHHHC---CCEEEEeccCcccCcCCHHHHHHhhccCceEEEEcC
Confidence            99999999999987    88999999999999998877655   999999998753 35899999999887889999999


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC----CcccEEEeccccccCCCC--ceEEEEec
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      ++||+|.+.|   +++|+++|++||+++|+|++|+.+..   +.++..    .+.|+++.|++|.+|.+|  +|++++++
T Consensus       190 p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~  269 (404)
T 2o1b_A          190 PNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGFRVGFAVGNK  269 (404)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGGCCEEEEECH
T ss_pred             CCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhccCchhheEeEecCH
Confidence            9999999987   77899999999999999999986432   222222    256799999999887555  79999987


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      +.++++......       ...+.+.....++..+++...+.+++..++++++++++.+.|++ + ++.+..+..   +.
T Consensus       270 ~~~~~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~---g~  337 (404)
T 2o1b_A          270 DMIQALKKYQTH-------TNAGMFGALQDAAIYALNHYDDFLEEQSNVFKTRRDRFEAMLAK-A-DLPFVHAKG---GI  337 (404)
T ss_dssp             HHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCCB---SS
T ss_pred             HHHHHHHHHHhh-------ccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh-c-CCeecCCCc---ce
Confidence            766555443321       12356667777666677654445788888999999999999998 5 666654321   23


Q ss_pred             eEEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          353 NLNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       353 ~~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ++.+.++ ..+..++...+   +||.+.+|..|..                 ...+++||+++.  +++++++++++|++
T Consensus       338 ~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~~--~~e~l~~~l~~l~~  398 (404)
T 2o1b_A          338 YVWLETPPGYDSEQFEQFLVQEKSILVAPGKPFGE-----------------NGNRYVRISLAL--DDQKLDEAAIRLTE  398 (404)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHCEECEESGGGCG-----------------GGTTEEEEECCS--CTTHHHHHHHHHHG
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHCCEEEeCchhhCc-----------------CCCCeEEEEEcC--CHHHHHHHHHHHHH
Confidence            3455554 33445666654   4999998876532                 123799999986  67899999999988


Q ss_pred             HHHH
Q 040741          429 QVEK  432 (457)
Q Consensus       429 ~~~~  432 (457)
                      ++++
T Consensus       399 ~l~~  402 (404)
T 2o1b_A          399 LAYL  402 (404)
T ss_dssp             GGGG
T ss_pred             HHHh
Confidence            7653

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.97  E-value=2.6e-29  Score=255.27  Aligned_cols=345  Identities=14%  Similarity=0.159  Sum_probs=244.1

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      ..++|+ +.+....|++.+++.+.+.. + +|.. .+....+..+...++++++++++|.+. .+++++|||+|+.++++
T Consensus        67 ~~~~lg-~~~~~~~p~v~~~~~~~~~~-~-~~~~-~~~~~~g~~~l~~~l~~~la~~~g~~~-~~~~~~ggt~a~~~al~  141 (474)
T 1wyu_B           67 TFYPLG-SCTMKYNPKLHEEAARLFAD-L-HPYQ-DPRTAQGALRLMWELGEYLKALTGMDA-ITLEPAAGAHGELTGIL  141 (474)
T ss_dssp             SCCCBT-TTCCCCCCHHHHHHHHTTSS-C-CTTS-CGGGCHHHHHHHHHHHHHHHHHHTCSE-EECCCSSHHHHHHHHHH
T ss_pred             Cccccc-cccccCCHHHHHHHHHHHHh-c-CCCC-chhhChHHHHHHHHHHHHHHHHHCCCc-eeecChHHHHHHHHHHH
Confidence            567888 45556667888888776322 1 3332 111244556889999999999999875 46788999999998887


Q ss_pred             HhhhhhcCCCC-----EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          137 GVMHFYKDKKR-----HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       137 ~~~~~~~~~g~-----~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      ++..+..++|+     +|+++.+.|+++..++...   |++++.++.+.++.+|+++|++++++++++|+++++ |++|.
T Consensus       142 ~~~~~~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~---G~~vv~v~~~~~~~~d~~~L~~~i~~~t~~v~~~~p-n~~G~  217 (474)
T 1wyu_B          142 IIRAYHEDRGEGRTRRVVLVPDSAHGSNPATASMA---GYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNP-NTLGL  217 (474)
T ss_dssp             HHHHHHHHTTCTTTCCEEEEETTSCTHHHHHHHHT---TCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSS-CTTSC
T ss_pred             HHHHHHHhcCCccCCCEEEEeCCcChhhHHHHHHC---CCEEEEecCCCCCCcCHHHHHHhhCCCceEEEEECC-CCCcc
Confidence            76543324665     9999999999999887665   999999999888999999999999999999999997 57999


Q ss_pred             c-cChHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEEEeccccccC-CC-----CceEEEEecCCCcccc-ccc
Q 040741          212 I-QPMEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLMSLSGHKIYG-PK-----GVGALYMRRRPRIRVE-PLI  282 (457)
Q Consensus       212 ~-~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~~~s~~K~~g-~~-----G~G~l~~~~~~~~~~~-~~~  282 (457)
                      + .++++|.++|++||+++|+|++|+.+.. ......+++|++++|+||.++ |.     |+|+++++++..+++. +..
T Consensus       218 ~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~  297 (474)
T 1wyu_B          218 FERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLV  297 (474)
T ss_dssp             CCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEE
T ss_pred             cCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCcccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCee
Confidence            8 6999999999999999999999986654 223334578999999999554 42     5899999988766654 221


Q ss_pred             c-CC-cc------c---cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          283 N-GG-GQ------E---RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       283 ~-~~-~~------~---~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      . ++ ..      .   +++..++.+...+.++..++... .+++++..++..++++++.+.|.+ + ++.+..+. .. 
T Consensus       298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~-~~-  373 (474)
T 1wyu_B          298 ERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-K-GYRVPYDG-PS-  373 (474)
T ss_dssp             EECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCBCSSCS-SC-
T ss_pred             eccCCeeEecccCcccCcccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-c-CcEecCCC-Cc-
Confidence            1 11 00      0   12233345544444444444322 345788899999999999999999 5 77663221 11 


Q ss_pred             cceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          351 IGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       351 ~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ...+.+.+. +.+..++...|  +||.+. +..+              +   ....+.+||+++..++++++++++++|+
T Consensus       374 ~~~~~~~~~~~~~~~~l~~~L~~~Gi~~~-~~~~--------------~---~~~~~~lRis~~~~~t~e~id~~~~~L~  435 (474)
T 1wyu_B          374 MHEFVAQPPEGFRALDLAKGLLELGFHPP-TVYF--------------P---LIVKEALMVEPTETEAKETLEAFAEAMG  435 (474)
T ss_dssp             CSCEEEBCSTTCCHHHHHHHHHHTTCCCC-EESC--------------S---TTSTTCEEECCCTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHCCcccc-cccc--------------c---cccCCEEEEEeecCCCHHHHHHHHHHHH
Confidence            111223332 24556676666  576542 2111              0   1123799999999999999999999999


Q ss_pred             HHHHH
Q 040741          428 KQVEK  432 (457)
Q Consensus       428 ~~~~~  432 (457)
                      +++++
T Consensus       436 ~~~~~  440 (474)
T 1wyu_B          436 ALLKK  440 (474)
T ss_dssp             HHHTS
T ss_pred             HHHHh
Confidence            98764

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.97  E-value=1.7e-29  Score=252.02  Aligned_cols=326  Identities=17%  Similarity=0.207  Sum_probs=241.7

Q ss_pred             EecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      |+|+.++.    +.+|++.+++.+.+... +.... .+...+...+...++++++++++|.+.  .+++++||+|+..++
T Consensus        61 ~ld~~s~~~l~~~~~p~v~~a~~~~l~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~~--~i~~~sGt~a~~~~l  136 (409)
T 3kki_A           61 DIILQSNDYLALANHPLIKARLAKSLLEE-QQSLF-MSASFLQNDYDKPMIEKRLAKFTGFDE--CLLSQSGWNANVGLL  136 (409)
T ss_dssp             SEECCCSCTTCCTTCHHHHHHHHHHHHSC-CCCCC-SBGGGGCSTTTSCHHHHHHHHHHTCSE--EEEESCHHHHHHHHH
T ss_pred             eEEeeccCccCCcCCHHHHHHHHHHHHHc-CCCCC-ccccccCCcHHHHHHHHHHHHHhCCCe--EEEecchHHHHHHHH
Confidence            45555544    24799999999998753 22111 112222223566789999999999864  666777899999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~  214 (457)
                      +++.    ++||.|+++.++|+++..+++..   |.+++.++.     .|++++++++++ ++++|++++++||+|.+.|
T Consensus       137 ~~~~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~  204 (409)
T 3kki_A          137 QTIC----QPNTNVYIDFFAHMSLWEGARYA---NAQAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAP  204 (409)
T ss_dssp             HHHC----CTTCEEEEETTSCHHHHHHHHHT---TCEEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCC
T ss_pred             HHhc----CCCCEEEECCCcCHHHHHHHHHc---CCeEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCC
Confidence            9988    89999999999999999887766   999888875     489999999975 5899999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCC
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~  285 (457)
                      +++|.++|++||++||+|++|+.+....         +. ..++|+++.|++|.+|+.| |+++.+++..+.+.......
T Consensus       205 l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~-~~~~di~~~s~sK~~~~~g-g~v~~~~~~~~~~~~~~~~~  282 (409)
T 3kki_A          205 LAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGL-TREVHFMTASLAKTFAYRA-GAIWCNNEVNRCVPFISYPA  282 (409)
T ss_dssp             HHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTC-GGGCSEEEEESSSTTCSSC-EEEEESSSGGGTHHHHCHHH
T ss_pred             HHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCC-CCCCCEEEeecchhhCCCc-eEEEECHHHHHHHHHhCcCc
Confidence            9999999999999999999998754321         11 1257899999999888765 99999887666554322111


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-cch
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-EGE  364 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  364 (457)
                           ...+..+...++++.++++...+. ++..++++++++++.+.|++ + ++.+.+     ...++.+.++.. +..
T Consensus       283 -----~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~-~-g~~~~~-----~~~~~~~~~~~~~~~~  349 (409)
T 3kki_A          283 -----IFSSTLLPYEAAGLETTLEIIESA-DNRRQHLDRMARKLRIGLSQ-L-GLTIRS-----ESQIIGLETGDERNTE  349 (409)
T ss_dssp             -----HHSBCCCHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHT-T-TCCCCC-----SSSEEEEEEESHHHHH
T ss_pred             -----cccCCCcHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHH-c-CCccCC-----CCCEEEEEeCCHHHHH
Confidence                 112245666777777788776543 77888999999999999998 4 555442     245555665432 234


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ++...|  +||.+.++..+..                ....++|||+++..++++|+++++++|++++++
T Consensus       350 ~~~~~L~~~Gv~v~~~~~~~~----------------~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~  403 (409)
T 3kki_A          350 KVRDYLESNGVFGSVFCRPAT----------------SKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY  403 (409)
T ss_dssp             HHHHHHHHTTEECEEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCceEeeeCCCCc----------------CCCCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence            555555  6888776432211                123489999999999999999999999999875

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.97  E-value=3.6e-29  Score=256.34  Aligned_cols=350  Identities=16%  Similarity=0.143  Sum_probs=236.2

Q ss_pred             CCcEEecCCCCCCCCHHHHH-HHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLD-AMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~-a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~  132 (457)
                      ..+.||++..++..++.++. .+..++     |+....+..+........++++++++++|++  +++++||+|||+|+.
T Consensus        91 ~~p~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~  165 (504)
T 2okj_A           91 GHPRFFNQLSTGLDIIGLAGEWLTSTA-----NTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNM  165 (504)
T ss_dssp             TCTTEESSSSCCCCHHHHHHHHHHHHH-----CCBSSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHH
T ss_pred             CCCCEEEEccCCCCHHHHHHHHHHHhh-----ccCCCchhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHH
Confidence            35679988765555544433 222222     2222233333334455666789999999998  678999999999999


Q ss_pred             HHHHHhhhhh----cCCC-----C-EEEEcCCCCcchHHHHHHHHhcCc-EEEEEeCCCCCCCCHHHHHHhcCC------
Q 040741          133 VSIKGVMHFY----KDKK-----R-HVITTQTEHKCVLDSCRHLQQEGF-EITYLPVGADGIVNLDELRAAIRP------  195 (457)
Q Consensus       133 ~al~~~~~~~----~~~g-----~-~vi~~~~~h~~~~~~~~~~~~~G~-~v~~v~~~~~~~~d~~~le~~i~~------  195 (457)
                      +++.++....    +++|     + .|+++...|+++..+++.+.. |. +++.+|.+.++.+|+++|+++|++      
T Consensus       166 ~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~g~-g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~  244 (504)
T 2okj_A          166 YSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAALGF-GTDNVILIKCNERGKIIPADFEAKILEAKQKGY  244 (504)
T ss_dssp             HHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTTS-CGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHcCC-CcccEEEEecCCCCCCCHHHHHHHHHHHHHCCC
Confidence            9999886321    1134     5 789999999999999887722 33 899999988899999999999976      


Q ss_pred             CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCC-CcccEEEeccccccC-CCCceEE
Q 040741          196 DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEK-WNVSLMSLSGHKIYG-PKGVGAL  268 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~-~~~Di~~~s~~K~~g-~~G~G~l  268 (457)
                      ++++|++++++|++|.+.|+++|+++|++||+++|+|++++.+...     ..+.. .++|++++++||++| |.|+|++
T Consensus       245 ~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l  324 (504)
T 2okj_A          245 VPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAI  324 (504)
T ss_dssp             EEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEE
T ss_pred             CceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEE
Confidence            5899999999999999999999999999999999999999877653     22332 268999999999765 8889999


Q ss_pred             EEecC-CCcc----ccccccCCccccc--c-------ccC-CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          269 YMRRR-PRIR----VEPLINGGGQERG--I-------RSG-TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       269 ~~~~~-~~~~----~~~~~~~~~~~~~--~-------~~~-t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +++++ .+.+    ..++..+++...+  .       ..+ ......+.+...++.  .++++++.++..++++++.+.|
T Consensus       325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~rr~~~l~~~a~l~~lg--~~g~~~~~~~~~~~a~~l~~~L  402 (504)
T 2okj_A          325 LVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKAIQCGRHVDIFKFWLMWKAKG--TVGFENQINKCLELAEYLYAKI  402 (504)
T ss_dssp             EESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGSSCSSCBCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECHHHHHHHhcCCCccccCCcccccCcCCcccCCCCCCCCccHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            99875 3222    2233322211000  0       000 011222222222322  3468889999999999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEcccc-----------------chHHHhcc--cCeEecccCccCCCCCChhHHHHH
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE-----------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRA  394 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~  394 (457)
                      ++ +++++++.+.. ...+++.|.+....                 ...+...|  +|+.+..+...             
T Consensus       403 ~~-~~~~~~~~~~~-p~~~~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~-------------  467 (504)
T 2okj_A          403 KN-REEFEMVFNGE-PEHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQPQ-------------  467 (504)
T ss_dssp             TT-CTTEEESSSSC-CSSSCEEEEECCGGGSSCCCCHHHHHHHTTHHHHHHHHHHHHTSCEEEEEEE-------------
T ss_pred             hc-CCCEEEEecCC-CCeEEEEEEEeCccccccccchhhHHHHHHHHHHHHHHHHhCCcEEEEeeEE-------------
Confidence            99 89999986311 22444555542111                 12333343  35322211100             


Q ss_pred             cCCCccCCCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHH
Q 040741          395 LGVDEDMAHTSIRFGIG-RFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       395 ~g~~~~~~~~~iRi~~~-~~~t~edid~~~~~l~~~~~~~  433 (457)
                           ....+++||++. ..++++||++++++|+++++++
T Consensus       468 -----~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~~~  502 (504)
T 2okj_A          468 -----GDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  502 (504)
T ss_dssp             -----TTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHTC-
T ss_pred             -----CCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                 001158999996 8899999999999999887643

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.97  E-value=4.7e-30  Score=254.37  Aligned_cols=335  Identities=14%  Similarity=0.145  Sum_probs=235.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh---
Q 040741           65 ATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF---  141 (457)
Q Consensus        65 ~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~---  141 (457)
                      +...+++++++++.+.+.+.+       +.    ..+...++++.+++++|.+  +++++++||+|++++++++...   
T Consensus         9 ~~~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~~l~~~la~~~~~~--~~i~~~sGt~a~~~al~~~~~~~~~   75 (390)
T 3b8x_A            9 ASSTWDDLEYKAIQSVLDSKM-------FT----MGEYVKQYETQFAKTFGSK--YAVMVSSGSTANLLMIAALFFTKKP   75 (390)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTC-------CS----SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTSSSSC
T ss_pred             CCCCCCHHHHHHHHHHHHcCC-------CC----CChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHHhhhhc
Confidence            456789999999999987521       11    1257889999999999986  5899999999999999988200   


Q ss_pred             hcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741          142 YKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ  220 (457)
Q Consensus       142 ~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~  220 (457)
                      ..++|++|+++.++|.++..+++..   |+++++++++.+ +.+|++++++++++++++|++++   ++|...|+++|.+
T Consensus        76 ~~~~g~~Vi~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~~g~~~~~~~i~~  149 (390)
T 3b8x_A           76 RLKKGDEIIVPAVSWSTTYYPLQQY---GLRVKFVDIDINTLNIDIESLKEAVTDSTKAILTVN---LLGNPNNFDEINK  149 (390)
T ss_dssp             SCCTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHCCTTEEEEEEEC---GGGCCCCHHHHHH
T ss_pred             CCCCcCEEEECCCCcHHHHHHHHHc---CCEEEEEecCccccCcCHHHHHHHhCcCCeEEEEEC---CccChhhHHHHHH
Confidence            0178999999999999999887765   999999999865 88999999999999999998874   5788899999999


Q ss_pred             HHHhcCCcEEEehhhhcCCCcccCCCCcc--cEEEecc--cc-ccCCCCceEEEEec-CCCccccccccCC--cc-----
Q 040741          221 ICKEFKIPFHTDAAQALGKIPVDVEKWNV--SLMSLSG--HK-IYGPKGVGALYMRR-RPRIRVEPLINGG--GQ-----  287 (457)
Q Consensus       221 l~~~~~v~li~D~a~~~g~~~~~~~~~~~--Di~~~s~--~K-~~g~~G~G~l~~~~-~~~~~~~~~~~~~--~~-----  287 (457)
                      +|++||+++|+|++|+.|... +....+.  |+.++|+  +| +.++.| |++++++ +..+++.+...++  .+     
T Consensus       150 l~~~~~~~li~D~a~~~g~~~-~~~~~g~~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~~~~~~~~~~g~~~~~~~~~  227 (390)
T 3b8x_A          150 IIGGRDIILLEDNCESMGATF-NNKCAGTFGLMGTFSSFYSNHIATMEG-GCIVTDDEEIYHILLCIRAHGWTRNLPKKN  227 (390)
T ss_dssp             HHTTSCCEEEEECTTCTTCEE-TTEETTSSSSEEEEECCTTSSSCSSSC-EEEEESCHHHHHHHHHHTBTTBSTTSCSEE
T ss_pred             HHHHcCCEEEEECcCcccCEE-CCcccccccceEEEEccCCCCCccCCc-eEEEeCCHHHHHHHHHHHhcCCCccccccc
Confidence            999999999999999988765 3333343  5655543  34 545565 8888876 3333444433322  10     


Q ss_pred             ------------------ccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          288 ------------------ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       288 ------------------~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                                        ..+++.++.+...++++.. +    +.+++..++.+++++++.+.|.+ ++++.+.+++...
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~-l----~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~  301 (390)
T 3b8x_A          228 KVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ-L----KKLPRFISVRRKNAEYFLDKFKD-HPYLDVQQETGES  301 (390)
T ss_dssp             TTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHTT-CSSEEECCCCSBC
T ss_pred             cccccccccccccccceeccccccCcCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCCCc
Confidence                              0122233444444444432 3    34667888899999999999998 8899887643222


Q ss_pred             ccceEEEEEc---cccchHHHhcc--cCeEecc---cCccCC-CCCCh-hHH-HHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          350 YIGNLNLSFA---YVEGESLLMGL--KEVAVSS---GSACTS-ASLEP-SYV-LRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       350 ~~~~~~~~~~---~~~~~~~~~~l--~~i~~~~---g~~~~~-~~~~~-~~~-l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      ....+.+.++   +.+.+++...|  +||.++.   |..|.. +..+. +++ +.+++..+....+.|||+++..+|++|
T Consensus       302 ~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~t~~d  381 (390)
T 3b8x_A          302 SWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIELFDE  381 (390)
T ss_dssp             CCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSCCHHH
T ss_pred             ccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCCCHHH
Confidence            2223444555   34566777777  6888876   444543 21110 000 112222333345789999999999999


Q ss_pred             HHHHHHHH
Q 040741          419 VDRAIELT  426 (457)
Q Consensus       419 id~~~~~l  426 (457)
                      ||+++++|
T Consensus       382 i~~i~~~l  389 (390)
T 3b8x_A          382 IDYLREVL  389 (390)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhh
Confidence            99999876

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.97  E-value=6e-30  Score=253.32  Aligned_cols=334  Identities=15%  Similarity=0.144  Sum_probs=231.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK  146 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g  146 (457)
                      .+++++++++.+.+.+.  +     +  ++...+...++++.+++++|.+ + .+++++||+|++++++++ .    ++|
T Consensus        14 ~~~~~~~~a~~~~l~~~--~-----~--~~~~~~~~~~l~~~la~~~~~~-~-~i~~~sGt~al~~~l~~l~~----~~g   78 (388)
T 1b9h_A           14 QYDDAERNGLVRALEQG--Q-----W--WRMGGDEVNSFEREFAAHHGAA-H-ALAVTNGTHALELALQVMGV----GPG   78 (388)
T ss_dssp             CCCHHHHHHHHHHHHTS--C-----C--BTTTCSHHHHHHHHHHHHTTCS-E-EEEESCHHHHHHHHHHHTTC----CTT
T ss_pred             CCCHHHHHHHHHHHHcC--C-----e--eecCCHHHHHHHHHHHHHhCCC-e-EEEeCCHHHHHHHHHHHcCC----CCc
Confidence            45689999999998752  1     0  1112257889999999999986 3 445555699999999998 5    789


Q ss_pred             CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc
Q 040741          147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF  225 (457)
Q Consensus       147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~  225 (457)
                      ++|+++.++|+++..+++..   |+++++++++.+ +.+|+++|++++++++++|+   ++|++|.+.|+++|.++|++|
T Consensus        79 d~Vi~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~---~~n~tG~~~~l~~i~~la~~~  152 (388)
T 1b9h_A           79 TEVIVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIM---PVHMAGLMADMDALAKISADT  152 (388)
T ss_dssp             CEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEEC---CBCGGGCCCCHHHHHHHHHHH
T ss_pred             CEEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCCCHHHHHHhcCcCceEEE---EeCCccCcCCHHHHHHHHHHc
Confidence            99999999999998877655   999999999854 78999999999998888877   788999999999999999999


Q ss_pred             CCcEEEehhhhcCCCc--ccCCCCc-ccEEEeccccccCCCCceEEEEecCCC---ccccccccCCcccc------cccc
Q 040741          226 KIPFHTDAAQALGKIP--VDVEKWN-VSLMSLSGHKIYGPKGVGALYMRRRPR---IRVEPLINGGGQER------GIRS  293 (457)
Q Consensus       226 ~v~li~D~a~~~g~~~--~~~~~~~-~Di~~~s~~K~~g~~G~G~l~~~~~~~---~~~~~~~~~~~~~~------~~~~  293 (457)
                      |+++|+|++|+.|..+  .++..++ +++.++|.+|.+++..+|+++.+++.+   +++.... +++...      ....
T Consensus       153 ~~~li~D~a~~~g~~~~~~~~~~~~~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  231 (388)
T 1b9h_A          153 GVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRH-SCGRPRDDRRYFHKIA  231 (388)
T ss_dssp             TCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHT-BTTCCTTCSSCCCCSC
T ss_pred             CCEEEEecchhcCCccCCeecccccceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHH-hCCCCccCccceeecc
Confidence            9999999999987654  2333333 444455555855433469998887533   3332222 111110      0112


Q ss_pred             CC---CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---CcccceEEEEEccc---cch
Q 040741          294 GT---LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---RRYIGNLNLSFAYV---EGE  364 (457)
Q Consensus       294 ~t---~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~  364 (457)
                      |+   ++...++++..    ..+.+++..++.+++++++.+.|++ ++++.+.++..   ...+.++.+.++..   +..
T Consensus       232 g~~~~~~~~~~a~~~~----~~~~l~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (388)
T 1b9h_A          232 GSNMRLNEFSASVLRA----QLARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRN  306 (388)
T ss_dssp             CCBCBCBHHHHHHHHH----HHTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHH
T ss_pred             cccCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCcCCCccceEEEEEEeCCcCcccHH
Confidence            23   33333332222    2234667788888999999999998 88888876432   12245666676643   445


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCC--------------CccCCCCeEEEecCCCC-CHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV--------------DEDMAHTSIRFGIGRFT-TEAEVDRAIELTV  427 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~--------------~~~~~~~~iRi~~~~~~-t~edid~~~~~l~  427 (457)
                      ++...|  +||.++.+...  ....+.+  ..+|.              ......+.|||+++..+ |++|||+++++|+
T Consensus       307 ~l~~~L~~~gI~v~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~~l~  382 (388)
T 1b9h_A          307 ALVDRLVEAGLPAFAAFRA--IYRTDAF--WELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIA  382 (388)
T ss_dssp             HHHHHHHHTTCCEEECCCC--GGGSHHH--HHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCcccccCc--cccChHh--HhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHHHHH
Confidence            666666  68888776431  1111211  12222              22223468999999999 9999999999999


Q ss_pred             HHHHH
Q 040741          428 KQVEK  432 (457)
Q Consensus       428 ~~~~~  432 (457)
                      +++++
T Consensus       383 ~~~~~  387 (388)
T 1b9h_A          383 DAVAR  387 (388)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            98764

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.97  E-value=3.1e-29  Score=245.46  Aligned_cols=280  Identities=15%  Similarity=0.146  Sum_probs=215.2

Q ss_pred             HHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCC-CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC
Q 040741          103 VETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKK-RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD  181 (457)
Q Consensus       103 ~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g-~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~  181 (457)
                      ..++++.+++++|++++++++++|+|++++++++++.    ++| ++|++..++|.++...++..   |.+++.++.+.+
T Consensus        60 ~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~----~~g~d~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~  132 (356)
T 1fg7_A           60 PKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDN  132 (356)
T ss_dssp             CHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTT
T ss_pred             HHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh----CCCCCEEEEeCCChHHHHHHHHHc---CCEEEEeeCCCC
Confidence            5689999999999988899999999999999999987    788 99999999999998887766   999999998877


Q ss_pred             CCCCHHHHHHhcCCCceEEEEeccccccccccChHH---HHHHHHhcCCcEEEehhhhcCCC--c-ccC-CCCcccEEEe
Q 040741          182 GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE---IGQICKEFKIPFHTDAAQALGKI--P-VDV-EKWNVSLMSL  254 (457)
Q Consensus       182 ~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~---i~~l~~~~~v~li~D~a~~~g~~--~-~~~-~~~~~Di~~~  254 (457)
                      +.+|+++++++++ ++++|++++++||+|.+.|.++   |+++|+ +|+++|+|++|+....  . ... ...+.++++.
T Consensus       133 ~~~d~~~l~~~i~-~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~~~~~~~~~~~~~~i~~~  210 (356)
T 1fg7_A          133 WQLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILR  210 (356)
T ss_dssp             SCCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEE
T ss_pred             CCCCHHHHHHHhc-CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCCCcHHHHHhhCCCEEEEe
Confidence            7899999999998 8999999999999999998655   455566 8999999999985431  1 122 3345688999


Q ss_pred             ccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHH
Q 040741          255 SGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       255 s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~  331 (457)
                      |++|.+|++|  +|+++++++.++++......         .+.+.....++.++++... +.+++..++++++++++.+
T Consensus       211 s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~~---------~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~  281 (356)
T 1fg7_A          211 TLSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIA  281 (356)
T ss_dssp             ESSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHhhcCchhhhEEEEeCHHHHHHHHHhcCC---------CCCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence            9999888666  79999987665555433221         1456666665555664321 1267888889999999999


Q ss_pred             HHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecc-cCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS-GSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      .|++ ++++....+.   ...++.+.++  +..++...|  +||.+.+ |..|..                   .+++||
T Consensus       282 ~L~~-~~~~~~~~~~---~~~~~~~~~~--~~~~l~~~L~~~gI~v~~~g~~~~~-------------------~~~iRi  336 (356)
T 1fg7_A          282 ALKE-IPCVEQVFDS---ETNYILARFK--ASSAVFKSLWDQGIILRDQNKQPSL-------------------SGCLRI  336 (356)
T ss_dssp             HHHH-STTEEEECCC---SSSEEEEEET--THHHHHHHHHHTTEECEECTTSTTC-------------------TTEEEE
T ss_pred             HHHh-CCCceEECCC---CCeEEEEECC--CHHHHHHHHHHCCEEEEECCCCCCC-------------------CCeEEE
Confidence            9998 7764333322   1445555554  456666666  6999988 765421                   268999


Q ss_pred             ecCCCCCHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~  428 (457)
                      +++   +++|+++++++|++
T Consensus       337 s~~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          337 TVG---TREESQRVIDALRA  353 (356)
T ss_dssp             ECC---CHHHHHHHHHHHHT
T ss_pred             EeC---CHHHHHHHHHHHHh
Confidence            997   58999999998875

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.97  E-value=4.7e-30  Score=252.71  Aligned_cols=342  Identities=15%  Similarity=0.105  Sum_probs=236.2

Q ss_pred             ecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-h
Q 040741           61 LDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-M  139 (457)
Q Consensus        61 l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~  139 (457)
                      ++++...+..+++.+++.+.+....           +...+...++++.+++++|.+  ++++++|||+|++++++++ .
T Consensus         9 ~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~~~~~~~~~   75 (374)
T 3uwc_A            9 SYLERQFADIEPYLNDLREFIKTAD-----------FTLGAELEKFEKRFAALHNAP--HAIGVGTGTDALAMSFKMLNI   75 (374)
T ss_dssp             CCHHHHTSSCHHHHHHHHHHHHHTC-----------CSSCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHTTC
T ss_pred             eccccCCCCchHHHHHHHHHHHcCC-----------cccChhHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC
Confidence            4443334333338888888776421           111257889999999999986  5999999999999999998 6


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG  219 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~  219 (457)
                          ++|++|+++.++|+++..+++..   |.++++++.+.++.+|++++++++++++++|+   ++||+|.+.|+++|.
T Consensus        76 ----~~gd~v~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~---~~n~~G~~~~~~~i~  145 (374)
T 3uwc_A           76 ----GAGDEVITCANTFIASVGAIVQA---GATPVLVDSENGYVIDPEKIEAAITDKTKAIM---PVHYTGNIADMPALA  145 (374)
T ss_dssp             ----CTTCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTSSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHHHH
T ss_pred             ----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEecCCCCCcCHHHHHHhCCCCceEEE---EeCCcCCcCCHHHHH
Confidence                89999999999999998877655   99999999987788999999999999988887   778999999999999


Q ss_pred             HHHHhcCCcEEEehhhhcCCCcccCCCCc--ccEEEeccc--cccCCC-CceEEEEecC-CCccccccccCCcccccccc
Q 040741          220 QICKEFKIPFHTDAAQALGKIPVDVEKWN--VSLMSLSGH--KIYGPK-GVGALYMRRR-PRIRVEPLINGGGQERGIRS  293 (457)
Q Consensus       220 ~l~~~~~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~~--K~~g~~-G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~  293 (457)
                      ++|++||+++|+|++|+.|.. ++....+  .|++++|+|  |++|+. .+|+++.+++ ..+++.....++.... +..
T Consensus       146 ~~~~~~~~~li~D~~~~~g~~-~~~~~~~~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~  223 (374)
T 3uwc_A          146 KIAKKHNLHIVEDACQTILGR-INDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINR-DVC  223 (374)
T ss_dssp             HHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEET-TEE
T ss_pred             HHHHHcCCEEEEeCCCccCce-eCCeeccccccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCcccc-Ccc
Confidence            999999999999999998764 3333333  699999977  977763 3677776653 3333343333221111 111


Q ss_pred             --CCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEeCCCCCcccceEEEEEccccchHHHhc
Q 040741          294 --GTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDG-VVVNGSMERRYIGNLNLSFAYVEGESLLMG  369 (457)
Q Consensus       294 --~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (457)
                        .+.+. .+..+.+++.... +.+++..++.+++.+++.+.|.+ +++ +.+...+......+..+.+...+...+...
T Consensus       224 ~~~~~~~-~~~~~~aa~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  301 (374)
T 3uwc_A          224 VEYGINC-RMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVD-LSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQY  301 (374)
T ss_dssp             SSCCCBC-BCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHTGG-GTTTEECCCCCTTEECCCSSEEEEETTHHHHHHH
T ss_pred             ccccccC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCeEEeccCCCCCceeeEEEEEEcCCHHHHHHH
Confidence              01111 1112222333322 34678888999999999999998 777 777644433333333333333356677776


Q ss_pred             c--cCeEecccCccCCCCCChhHHHHHcCCCc-------cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          370 L--KEVAVSSGSACTSASLEPSYVLRALGVDE-------DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       370 l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~-------~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      |  +||.+.++..... ...|  .+..+++..       ....+.|||+++..+|++||++++++|++++++
T Consensus       302 L~~~gi~v~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~  370 (374)
T 3uwc_A          302 LKDNGIEVKIHYPIAM-HLQP--AAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYLE  370 (374)
T ss_dssp             HHHTTBCCBCSCSSCG-GGSG--GGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCccccCCCCcc-ccCh--hhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence            6  6888887751100 0011  111122211       112379999999999999999999999998875

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.97  E-value=5.9e-30  Score=252.16  Aligned_cols=327  Identities=13%  Similarity=0.036  Sum_probs=235.9

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~~  132 (457)
                      +++|.|..+.+. ++++++.+++.+.+.....++..      ....+..+.+.+.+++.+|.  +++++++|+|+|+|++
T Consensus        23 g~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~   96 (376)
T 3ezs_A           23 KRGLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKENELISTLGSREVLF   96 (376)
T ss_dssp             SCCCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHH
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHH
Confidence            366777766655 57899999999887443333221      01124444555555555587  6788999999999999


Q ss_pred             HHHHHhhhhhcCC--CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          133 VSIKGVMHFYKDK--KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       133 ~al~~~~~~~~~~--g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++++++.    ++  |++|++..+.|.++...++..   |.+++.++.+.++.+++ ++++++++++++|++++++||+|
T Consensus        97 ~~~~~~~----~~~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~-~l~~~~~~~~~~v~~~~p~nptG  168 (376)
T 3ezs_A           97 NFPSFVL----FDYQNPTIAYPNPFYQIYEGAAKFI---KAKSLLMPLTKENDFTP-SLNEKELQEVDLVILNSPNNPTG  168 (376)
T ss_dssp             HHHHHHT----TTCSSCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTSCC-CCCHHHHHHCSEEEECSSCTTTC
T ss_pred             HHHHHHc----CCCCCCEEEEecCCcHhHHHHHHHc---CCEEEEcccCCCCCcch-hHHhhhccCCCEEEEcCCCCCcC
Confidence            9999988    78  999999999999988876655   99999999886644555 67777777889999999999999


Q ss_pred             cccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC---------CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741          211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE---------KWNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~---------~~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      .+.|   +++|+++|++||+++|+|++|+....   +....         ..+.++++.|++|.+|.+|  +|+++.+++
T Consensus       169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~  248 (376)
T 3ezs_A          169 RTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGLRSGFIAGDSR  248 (376)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGGCCEEEEECHH
T ss_pred             CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccceeEEEeeCHH
Confidence            9988   66777889999999999999986332   22111         3467899999999887554  899998876


Q ss_pred             CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          274 PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                      ..+.+......       ...+.+...+.++.++++. .+.+++..++++++++++.+.|+    ++.  . +  ....+
T Consensus       249 ~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~l~~~l~----~~~--~-~--~~~~~  311 (376)
T 3ezs_A          249 LLEKYKAFRAY-------LGYTSANAIQKASEAAWLD-DRHAEFFRNIYANNLKLARKIFK----NTL--I-Y--PYSFY  311 (376)
T ss_dssp             HHHHHHHHHTT-------TCCCCCHHHHHHHHHHHHC-SHHHHHHHHHHHHHHHHHHHHST----TCC--C-C--SBSSE
T ss_pred             HHHHHHHHHhh-------hcCCCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHhc----CCC--C-C--CcceE
Confidence            66555443321       1235677777776666654 23467777888888888888775    222  1 1  12344


Q ss_pred             EEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.+.++  +..++...|   +||.+.+|..|...               ....+++||+++.  +++++++++++|++++
T Consensus       312 ~~~~~~--~~~~~~~~l~~~~gi~v~~g~~~~~~---------------~~~~~~iRis~~~--~~~~i~~~l~~l~~~l  372 (376)
T 3ezs_A          312 VYLPVQ--NGENFAKTLYQNEGIITLPALYLGRN---------------RIGADYVRLALVY--DTPLLEKPLEIIETYR  372 (376)
T ss_dssp             EEEECS--CHHHHHHHHHHHHCCBCEEGGGGCST---------------TTTTTEEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred             EEEECC--CHHHHHHHHHHhCCEEEeCcHHhCCC---------------CCCCCeEEEEEcC--CHHHHHHHHHHHHHHH
Confidence            444544  456666655   59999999877531               1234899999985  8999999999999988


Q ss_pred             HH
Q 040741          431 EK  432 (457)
Q Consensus       431 ~~  432 (457)
                      ++
T Consensus       373 ~~  374 (376)
T 3ezs_A          373 EN  374 (376)
T ss_dssp             CC
T ss_pred             Hh
Confidence            64

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.97  E-value=3.1e-30  Score=260.03  Aligned_cols=354  Identities=14%  Similarity=0.079  Sum_probs=241.5

Q ss_pred             CCcE-EecCCCCCCCCHHHHHHHHHHHhhccCC-------CCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcE
Q 040741           56 GRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGN-------PHSRTHLFGWESEVAVETARSQIADLI------GASPKEI  121 (457)
Q Consensus        56 ~~~i-~l~~~~~~~~~~~v~~a~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i  121 (457)
                      .+.| +|+.+.+.. ++.+.+++.+.+.+...+       +.+..+..+|.......++++.+++++      +++++++
T Consensus        31 ~~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i  109 (444)
T 3if2_A           31 DQPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENI  109 (444)
T ss_dssp             SSCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGE
T ss_pred             chhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHE
Confidence            4667 887765554 667777777777665555       421123334443345677888888887      5678899


Q ss_pred             EEeCChHHHHHHHHHHhhhhhcCCCC--------------EEEEc-CCCCcchHHHHH---HHHhcCcEEEEEeCCC-CC
Q 040741          122 IFTSGATESNNVSIKGVMHFYKDKKR--------------HVITT-QTEHKCVLDSCR---HLQQEGFEITYLPVGA-DG  182 (457)
Q Consensus       122 ~~t~g~T~a~~~al~~~~~~~~~~g~--------------~vi~~-~~~h~~~~~~~~---~~~~~G~~v~~v~~~~-~~  182 (457)
                      +||+|+|+|++++++++.    ++|+              +|++. .++|..+...+.   .+...|..++.++.+. +|
T Consensus       110 ~~t~G~t~al~~~~~~l~----~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  185 (444)
T 3if2_A          110 ALTNGSQNAFFYLFNLFG----GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLPHIDEVTHDGEEG  185 (444)
T ss_dssp             EEESSHHHHHHHHHHHSS----EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCCEEEEEEETTEEE
T ss_pred             EEecCcHHHHHHHHHHHh----CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCceEEecccccccC
Confidence            999999999999999987    6776              77775 788888765432   2234478888888774 33


Q ss_pred             ----CCCHHHHHHh---cCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCCC
Q 040741          183 ----IVNLDELRAA---IRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEKW  247 (457)
Q Consensus       183 ----~~d~~~le~~---i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~~  247 (457)
                          .+|+++|+++   +++++++|++++++||+|.+.|   +++|+++|++||+++|+|++|+.+...     ......
T Consensus       186 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~  265 (444)
T 3if2_A          186 FFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWD  265 (444)
T ss_dssp             EEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCC
T ss_pred             ccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCC
Confidence                6899999998   7889999999999999999999   888999999999999999999743221     111223


Q ss_pred             cccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH--HhhHH-HHHHHH
Q 040741          248 NVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK--KEMDY-DHKRIT  323 (457)
Q Consensus       248 ~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~--~~~~~-~~~~~~  323 (457)
                      +.++++.|+||..+ +.++|+++++++...++.......       ....+.....++..+++...  ....+ ..++++
T Consensus       266 ~~~i~~~S~sK~~~~G~r~G~~~~~~~l~~~~~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~  338 (444)
T 3if2_A          266 NNTILCFSLSKIGLPGMRTGIIVADAKVIEAVSAMNAVV-------NLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQ  338 (444)
T ss_dssp             TTEEEEEESTTTTCGGGCCEEEECCHHHHHHHHHHHHHH-------HSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHH
T ss_pred             CCEEEEechhhccCCCCceEEEEECHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            67899999999622 234899998776555544332211       11334344444433443211  12222 566677


Q ss_pred             HHHHHHHHHHhhcCCC--eEEeCCCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          324 ALHDRLLNGIKEKLDG--VVVNGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      ++.+.+.+.|.+.+++  +.+..+..   +.++.+.++  +.+..++...|  +||.+.+|..|......++        
T Consensus       339 ~~~~~~~~~l~~~l~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~--------  407 (444)
T 3if2_A          339 KQATLAVKLLKQALGDYPLMIHKPEG---AIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSD--------  407 (444)
T ss_dssp             HHHHHHHHHHHHHSSSSSEEEECCCB---SSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTT--------
T ss_pred             HHHHHHHHHHHHhcccCCceEecCCc---cEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcc--------
Confidence            7778888877664554  55554321   345556665  34667777766  6999999998865321110        


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                       .....++|||+++.  ++++|++++++|+++++++..
T Consensus       408 -~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~~~~~  442 (444)
T 3if2_A          408 -YQHAHECIRMSIAA--DEQTLIDGIKVIGEVVRELYD  442 (444)
T ss_dssp             -CSGGGSEEEEESSS--CHHHHHHHHHHHHHHHHHHHT
T ss_pred             -cccCCCeEEEEEeC--CHHHHHHHHHHHHHHHHHHHc
Confidence             01223799999997  899999999999999987753

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=1.6e-29  Score=252.10  Aligned_cols=331  Identities=16%  Similarity=0.155  Sum_probs=240.7

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhC------CCC-CcEEEe
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIG------ASP-KEIIFT  124 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g------~~~-~~i~~t  124 (457)
                      ..+.|+|+.+.+. ++++++.+++.+.+...  .+++..          ....++++.++++++      +++ +++++|
T Consensus        22 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----------~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~   91 (410)
T 3e2y_A           22 DPSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQYTRG----------FGHPALVKALSCLYGKIYQRQIDPNEEILVA   91 (410)
T ss_dssp             STTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGSCCCT----------TCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE
T ss_pred             CCCeEEecCCCCCCCCCHHHHHHHHHHHhCccccCCCCC----------CChHHHHHHHHHHHHHHhCCCCCCCCCEEEe
Confidence            3567999998877 67899999999988642  111111          123455566666654      556 689999


Q ss_pred             CChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-----------CCCCCCHHHHHHhc
Q 040741          125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-----------ADGIVNLDELRAAI  193 (457)
Q Consensus       125 ~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-----------~~~~~d~~~le~~i  193 (457)
                      +|+|+|++++++++.    ++|++|++..+.|..+...++..   |.+++.++.+           .++.+|++++++++
T Consensus        92 ~g~~~a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~  164 (410)
T 3e2y_A           92 VGAYGSLFNSIQGLV----DPGDEVIIMVPFYDCYEPMVRMA---GAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKF  164 (410)
T ss_dssp             SHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTC
T ss_pred             CCcHHHHHHHHHHhc----CCCCEEEEeCCCchhhHHHHHHc---CCEEEEEeccccccccccccccCCcCCHHHHHhhc
Confidence            999999999999987    89999999999999998877665   9999999876           24468999999999


Q ss_pred             CCCceEEEEecccccccccc---ChHHHHHHHHhcCCcEEEehhhhcCC----CcccCC----CCcccEEEeccccccCC
Q 040741          194 RPDTGLISVMAVNNEIGVIQ---PMEEIGQICKEFKIPFHTDAAQALGK----IPVDVE----KWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       194 ~~~t~li~i~~~~~~~G~~~---~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~----~~~~Di~~~s~~K~~g~  262 (457)
                      ++++++|++++++||+|.+.   ++++|+++|++||+++|+|++|+...    ....+.    ..+.++++.|++|.+|+
T Consensus       165 ~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~  244 (410)
T 3e2y_A          165 SSKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSV  244 (410)
T ss_dssp             CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSC
T ss_pred             CCCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCC
Confidence            99999999999999999996   48899999999999999999997532    111111    22456889999998775


Q ss_pred             CC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-------HHHhhHHHHHHHHHHHHHHHHHH
Q 040741          263 KG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-------AKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       263 ~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-------~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +|  +|+++++++.+..+......       ...+.+.....++..+++.       ....+++..++++++++++.+.|
T Consensus       245 ~G~r~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L  317 (410)
T 3e2y_A          245 TGWKLGWSIGPAHLIKHLQTVQQN-------SFYTCATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLL  317 (410)
T ss_dssp             GGGCCEEEECCHHHHHHHHHHHHT-------TTCCCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEEECHHHHHHHHHHHHh-------hccCCChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            54  89999987765555433321       1235566666666666653       12347788889999999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      ++ + ++.+..+..   ..++.+.+....            ..++...+   +||.+.+|..|.....            
T Consensus       318 ~~-~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~------------  380 (410)
T 3e2y_A          318 NS-V-GLKPIVPDG---GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKS------------  380 (410)
T ss_dssp             HT-T-TCEEEBCSB---SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTT------------
T ss_pred             HH-C-CCeecCCCc---cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCC------------
Confidence            98 5 777665322   334444443211            12444433   5999999987754210            


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+...++|||+++.  +++++++++++|++
T Consensus       381 ~~~~~~~iRis~~~--~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          381 KPHFEKLVRFCFIK--KDSTLDAAEEIFRA  408 (410)
T ss_dssp             HHHHTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence            01234899999876  89999999999875

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.97  E-value=2.4e-30  Score=256.57  Aligned_cols=307  Identities=13%  Similarity=0.081  Sum_probs=224.2

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      |.+++...+...++++.+++++|.+  +.++++|||+|++++++ +.    ++|++|+++.+.|.+....+. .++..|+
T Consensus        47 ~~~~~~~~~~~~~lr~~la~~~g~~--~~i~~~sGt~a~~~al~-~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~  119 (393)
T 1n8p_A           47 YEYSRSQNPNRENLERAVAALENAQ--YGLAFSSGSATTATILQ-SL----PQGSHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHH-TS----CSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             cceecCCChhHHHHHHHHHHHhCCC--cEEEECChHHHHHHHHH-Hc----CCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence            3344444467899999999999986  46666777999999999 77    789999999999988776553 3456699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc----CCcEEEehhhhcCCCcccCCCC
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF----KIPFHTDAAQALGKIPVDVEKW  247 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~----~v~li~D~a~~~g~~~~~~~~~  247 (457)
                      ++++++.+     | +++++++++++++|++++++||+|.+.|+++|.++|+++    |+++|+|++|+.+... ++..+
T Consensus       120 ~v~~v~~~-----d-~~l~~~i~~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-~~~~~  192 (393)
T 1n8p_A          120 ETSFTNDL-----L-NDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-NPLNF  192 (393)
T ss_dssp             CCEEESSH-----H-HHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-CGGGG
T ss_pred             EEEEeCCC-----h-HHHHHhcccCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-CHHHc
Confidence            99999876     7 899999999999999999999999999999999999999    9999999999876542 34445


Q ss_pred             cccEEEeccccccCCCC--c-eEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          248 NVSLMSLSGHKIYGPKG--V-GALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       248 ~~Di~~~s~~K~~g~~G--~-G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      ++|++++|+||++|+.|  + |+++++ ++..+++......       ..++.++....++..+++    .+....++..
T Consensus       193 ~~di~~~S~sK~~g~~G~rigG~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l~----~~~~~~~~~~  261 (393)
T 1n8p_A          193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNA-------IGAIPSPFDAWLTHRGLK----TLHLRVRQAA  261 (393)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHHT----THHHHHHHHH
T ss_pred             CCeEEEEECcccccCCCCceeEEEEeCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhccc----hHHHHHHHHH
Confidence            79999999999999887  6 888885 4444444433211       112334333333333332    3456667777


Q ss_pred             HHHHHHHHHHhhcCCC-eE-EeCCC-----C--------Cc-c-cceEEEEEccc--cchHHHhcc--cCeEecccCccC
Q 040741          324 ALHDRLLNGIKEKLDG-VV-VNGSM-----E--------RR-Y-IGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACT  382 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~~-~~-~~~~~-----~--------~~-~-~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~  382 (457)
                      ++.+++.+.|.+ .+. +. +.-+.     .        .. . ++++.+.+++.  +...++..+  .+++++.|++|+
T Consensus       262 ~~~~~l~~~L~~-~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~l~~l~~~~~~~s~G~~~s  340 (393)
T 1n8p_A          262 LSANKIAEFLAA-DKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIES  340 (393)
T ss_dssp             HHHHHHHHHHTS-CTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSC
T ss_pred             HHHHHHHHHHHh-CCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCcHHHHHHHHhhCCcceECCCCCCCcc
Confidence            788888888888 665 43 21110     0        11 3 67788888653  345566665  477888888887


Q ss_pred             CCCC--ChhH------HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          383 SASL--EPSY------VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       383 ~~~~--~~~~------~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ....  .+++      ++.++|++    .+.|||+++..+++++|+.+.++|++.
T Consensus       341 ~~~~p~~~~h~~~~~~~~~~~g~~----~~~iRlS~g~~~~~~~i~~l~~al~~~  391 (393)
T 1n8p_A          341 LLEVPAVMTHGGIPKEAREASGVF----DDLVRISVGIEDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EEECTTTTTSCSSCTTTTTTTSCC----TTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             eeeccccccccccCHHHHHhcCCC----CCeEEEEEccCCHHHHHHHHHHHHHHh
Confidence            4322  2332      45666765    389999999999999999999888764

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.97  E-value=1.5e-28  Score=250.57  Aligned_cols=347  Identities=14%  Similarity=0.099  Sum_probs=240.6

Q ss_pred             CcEEecCCCCCCCCHH-HHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCC
Q 040741           57 RPLYLDMQATTPVDPR-VLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP---------KEIIFTSG  126 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~-v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---------~~i~~t~g  126 (457)
                      .+.|+++-.+++.++. +.+++..++     |+....+..+........++++++++++|++.         .+++||+|
T Consensus        73 ~p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~g  147 (486)
T 1js3_A           73 SPYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS  147 (486)
T ss_dssp             STTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC
T ss_pred             CCCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCC
Confidence            4567877555544443 555555554     23322334444455666678889999999974         35899999


Q ss_pred             hHHHHHHHHHHhhhhhcC-----CC---------C-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741          127 ATESNNVSIKGVMHFYKD-----KK---------R-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~-----~g---------~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~  191 (457)
                      ||+|+.+++.++.....+     .|         + .|+++...|+++..+++.+   |++++.++++.++.+|+++|++
T Consensus       148 gTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~---G~~v~~v~~d~~~~~d~~~L~~  224 (486)
T 1js3_A          148 ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQE  224 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhC---CCceEEeecCCCCCCCHHHHHH
Confidence            999999999887532101     02         2 4788999999999998888   9999999998889999999999


Q ss_pred             hcCCCce------EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-CCC-----CcccEEEeccccc
Q 040741          192 AIRPDTG------LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-VEK-----WNVSLMSLSGHKI  259 (457)
Q Consensus       192 ~i~~~t~------li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~~~-----~~~Di~~~s~~K~  259 (457)
                      +|+++++      +|++++++|++|.+.|+++|+++|++||+++|+|+||+.+....+ ...     .++|++++++||+
T Consensus       225 ~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~  304 (486)
T 1js3_A          225 ALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW  304 (486)
T ss_dssp             HHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHH
T ss_pred             HHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhh
Confidence            9987663      889999999999999999999999999999999999997754321 211     2689999999995


Q ss_pred             cC-CCCceEEEEecCC--Ccccc---ccccCCcc----ccccc----cCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHH
Q 040741          260 YG-PKGVGALYMRRRP--RIRVE---PLINGGGQ----ERGIR----SGTLPTPLIVGFGSACEIA-KKEMDYDHKRITA  324 (457)
Q Consensus       260 ~g-~~G~G~l~~~~~~--~~~~~---~~~~~~~~----~~~~~----~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~  324 (457)
                      ++ |.|+|+++++++.  .+.+.   .+..+.+.    ..+..    ..+... ...++..++... .++++++.++..+
T Consensus       305 ~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~rr~-~~~~~~~al~~~g~~g~~~~~~~~~~  383 (486)
T 1js3_A          305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF-RSLKMWFVFRMYGVKGLQAYIRKHVQ  383 (486)
T ss_dssp             SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCC-THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceEEEEEeCHHHHHHHhcCCchhhCCCcccccCCCCccccCCCCCCch-hHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            54 7789999998652  22221   11211111    00000    001111 233444455543 4568899999999


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +++++.+.|.+ +|+++++.++.   .+++.|.+...+  ..++...|  +|+.+..+..              +     
T Consensus       384 ~a~~l~~~L~~-~~~~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------~-----  440 (486)
T 1js3_A          384 LSHEFEAFVLQ-DPRFEVCAEVT---LGLVCFRLKGSDGLNEALLERINSARKIHLVPCR--------------L-----  440 (486)
T ss_dssp             HHHHHHHHHHH-CTTEEECSCCC---SSEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE--------------E-----
T ss_pred             HHHHHHHHHhc-CCCeEEeCCCc---eeEEEEEecChHHHHHHHHHHHHhcCCEEEEEEE--------------E-----
Confidence            99999999999 89999976432   556667765322  24555555  4543322210              0     


Q ss_pred             CCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          401 MAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       401 ~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .....+||++ ...++++||++++++|+++++++.+
T Consensus       441 ~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~~~~~  476 (486)
T 1js3_A          441 RGQFVLRFAICSRKVESGHVRLAWEHIRGLAAELLA  476 (486)
T ss_dssp             TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            1237999997 5568999999999999999988754

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.97  E-value=9.1e-30  Score=248.64  Aligned_cols=326  Identities=14%  Similarity=0.175  Sum_probs=229.4

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ..+|+|+.+.+.++++++++++.+....   .    ..  .+...+...++++++++++| .+.++++++|||+|+.+++
T Consensus         7 ~~~id~~~~~~~~~~~~v~~a~~~~~~~---~----~~--~~~~~~~~~~l~~~la~~~g-~~~~v~~~~~gt~a~~~al   76 (356)
T 1v72_A            7 PPALGFSSDNIAGASPEVAQALVKHSSG---Q----AG--PYGTDELTAQVKRKFCEIFE-RDVEVFLVPTGTAANALCL   76 (356)
T ss_dssp             CCCCBCSCGGGCCCCHHHHHHHHHTTSS---C----CC--STTCSHHHHHHHHHHHHHHT-SCCEEEEESCHHHHHHHHH
T ss_pred             CceEeeccCCccCCCHHHHHHHHhhccC---c----cc--ccccchHHHHHHHHHHHHhC-CCCcEEEeCCccHHHHHHH
Confidence            3567888777778899999999987531   0    11  12223678899999999999 4446999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHH-hcCC-------CceEEEEecc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRA-AIRP-------DTGLISVMAV  205 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~-~i~~-------~t~li~i~~~  205 (457)
                      +++.    ++|++|+++.++|.+..... .+...  |.+++.++.+ ++.+|++++++ ++++       ++++|+++++
T Consensus        77 ~~~~----~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~  150 (356)
T 1v72_A           77 SAMT----PPWGNIYCHPASHINNDECG-APEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQA  150 (356)
T ss_dssp             HTSC----CTTEEEEECTTSHHHHSSTT-HHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESS
T ss_pred             HHhc----CCCCEEEEcCccchhhhhch-HHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcC
Confidence            9887    79999999999998776541 12233  8899988875 46799999999 9986       6899999998


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC-----CcccCC--CCcccEEEeccccccCCCCceEEEEecCCC
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK-----IPVDVE--KWNVSLMSLSGHKIYGPKGVGALYMRRRPR  275 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~-----~~~~~~--~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~  275 (457)
                      +| +|.+.|   +++|.++|++||+++|+|++|+.+.     ......  ..+.|++++|+||.++|.|+|+++++++..
T Consensus       151 ~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~g~~~G~g~~~~~~~~~  229 (356)
T 1v72_A          151 TE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLA  229 (356)
T ss_dssp             CT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSSCEEEEESSGGGH
T ss_pred             CC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccCCCcCccEEEEECHHHH
Confidence            76 999554   8899999999999999999986421     111111  135789999999985566667888877665


Q ss_pred             ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          276 IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      +++......        .+........++..+++.+.+ .+.+..++.+++++++.+.|.+ ++++.+..+..   ..++
T Consensus       230 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~---~~~~  297 (356)
T 1v72_A          230 TEMSYRRKR--------AGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANIL  297 (356)
T ss_dssp             HHHHHHHHH--------TTCCCSSTHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEE
T ss_pred             hhHHHHhhc--------cCchhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh-CCCcEEccCCC---ccEE
Confidence            554432211        111111112222223333333 2456677888999999999998 88998865422   3444


Q ss_pred             EEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          355 NLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       355 ~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+.++    .++...|  +||.+.+|.+               +      .+++||+++..++++|+++++++|++++++
T Consensus       298 ~~~~~----~~~~~~l~~~gi~v~~g~~---------------~------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~  352 (356)
T 1v72_A          298 FCRLD----SAMIDALLKAGFGFYHDRW---------------G------PNVVRFVTSFATTAEDVDHLLNQVRLAADR  352 (356)
T ss_dssp             EEEEC----HHHHHHHHHTTCBCBCSSS---------------S------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred             EEEcC----HHHHHHHHhcCeEEecccc---------------C------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            44443    2555555  6888876541               1      279999999989999999999999998876


Q ss_pred             HHh
Q 040741          433 LRE  435 (457)
Q Consensus       433 ~~~  435 (457)
                      ..+
T Consensus       353 ~~~  355 (356)
T 1v72_A          353 TQE  355 (356)
T ss_dssp             ---
T ss_pred             hcc
Confidence            543

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.97  E-value=1.5e-29  Score=250.87  Aligned_cols=306  Identities=16%  Similarity=0.099  Sum_probs=221.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      |.|++...+...++++.+++++|.+  ++++++|||+|++++++++.    ++|++|+++.+.|+++...+. .++..|+
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~~--~~~~~~sGt~A~~~al~~~~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~  131 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDAA--FGRAFSSGMAAADCALRAML----RPGDHVVIPDDAYGGTFRLIDKVFTGWNV  131 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHTGGGGTC
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCcchHHHHHHHHHHhcCc
Confidence            4445445578899999999999986  59999999999999999887    899999999999998877764 3356699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++.+     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+.. ......++|+
T Consensus       132 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-~~~~~~~~di  205 (392)
T 3qhx_A          132 EYTPVALA-----DLDAVRAAIRPTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-QQPLSLGADV  205 (392)
T ss_dssp             EEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-CCGGGGTCSE
T ss_pred             EEEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-CChHHhCCcE
Confidence            99999876     89999999999999999999999999999999999999999999999999986632 2333557899


Q ss_pred             EEeccccccCCCC---ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|++|+.|   +|+++.++ +...++......       .....++.....+...+    +.+....++..++++
T Consensus       206 ~~~S~sK~lg~~g~~~~G~v~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~l----~~l~~~~~~~~~~~~  274 (392)
T 3qhx_A          206 VLHSTTKYIGGHSDVVGGALVTNDEELDQSFAFLQNG-------AGAVPGPFDAYLTMRGL----KTLVLRMQRHSENAA  274 (392)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             EEEcCccccCCCCCceEEEEEECcHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhhh----hHHHHHHHHHHHHHH
Confidence            9999999887665   79988874 333333322211       11233433333332222    234566777888888


Q ss_pred             HHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCC----CC
Q 040741          328 RLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTS----AS  385 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~----~~  385 (457)
                      ++.+.|++ .|.+..+..+.              ...++++.+.+++  .....++..+  .+++++.|+.|+.    ..
T Consensus       275 ~l~~~L~~-~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~~~~  353 (392)
T 3qhx_A          275 AVAEFLAE-HPAISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGRTAAEQLCAKTNIFILAESLGSVESLIEHPSA  353 (392)
T ss_dssp             HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCHHHHHHHHHHCSSSEECSCCCCSSCEEECGGG
T ss_pred             HHHHHHhc-CCCcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcHHHHHHHHHhCCCceECCCCCCCCceeeCccc
Confidence            99999988 78774432211              2236778888875  3456667666  5788888888653    22


Q ss_pred             CChhHHHH-HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          386 LEPSYVLR-ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       386 ~~~~~~l~-~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                      ..+..+.. ..|    ...+.|||+++..+++++|+.+.++|
T Consensus       354 ~~~~~~~~~~~g----~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          354 MTHASTAGSQLE----VPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             TSCGGGBTTBCC----CCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             ccccccCHHHcC----CCCCeEEEEeccCCHHHHHHHHHHHh
Confidence            22211111 122    23589999999876666666666554

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.97  E-value=3.1e-30  Score=256.68  Aligned_cols=343  Identities=16%  Similarity=0.157  Sum_probs=244.4

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      ++++.+.++.++++++++.+.+.+.+  ++|.++.+.......+..+.+++++++++|++++ .+++++||+|+.+++++
T Consensus        26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~g~~~~-~i~~~sGt~a~~~a~~~  104 (405)
T 2vi8_A           26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLFGAEHA-NVQPHSGAQANMAVYFT  104 (405)
T ss_dssp             EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHH
T ss_pred             eeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHhCCCce-EEEecCcHHHHHHHHHH
Confidence            66777778889999999999886433  3333321111122334444578899999998753 44455669999999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHH---HHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccccccccc
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSC---RHLQQEGFEITYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVI  212 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~---~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~  212 (457)
                      +.    ++|++|+++.++|+++....   ...+ .+.+++.++++ .++.+|++++++++++ ++++|+++.. + .|..
T Consensus       105 ~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~-~-~~~~  177 (405)
T 2vi8_A          105 VL----EHGDTVLGMNLSHGGHLTHGSPVNFSG-VQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAA-A-YPRI  177 (405)
T ss_dssp             HC----CTTCEEEEECGGGTCCTTTTCTTSHHH-HHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCS-S-CCSC
T ss_pred             hc----CCCCEEEEecccccchhcccchhhhcc-ceeEEEecccccccCCcCHHHHHHHHHhcCCeEEEEeCC-C-CCcc
Confidence            87    89999999999998875311   1221 13477888775 5678999999999986 7888877433 3 4677


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC---cccEEEeccccccC-CCCceEEEEecCCCccccccccCCccc
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW---NVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQE  288 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~---~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~  288 (457)
                      .++++|.++|++||+++|+|++|+.|..+.+....   .+|++++|+||++| +.| |+++++++..+++.+....    
T Consensus       178 ~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~~~~~~~~~l~~~~~~----  252 (405)
T 2vi8_A          178 IDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFP----  252 (405)
T ss_dssp             CCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTT----
T ss_pred             CCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEEEcHHHHHHHHhhhcc----
Confidence            78999999999999999999999865332222211   57999999999765 888 9999987665555443322    


Q ss_pred             cccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccchH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGES  365 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  365 (457)
                        +..+++++..++++.++++... .++++..++.+++++++.+.|.+ + ++.+..+..  ...++.+.++.  .+...
T Consensus       253 --~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~  326 (405)
T 2vi8_A          253 --GIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN-E-GFTLVSGGT--DNHLLLVDLRPQQLTGKT  326 (405)
T ss_dssp             --TTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred             --cccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-C-CCeEecCCC--CceEEEEEccCCCCCHHH
Confidence              2235677778888878888765 46889999999999999999999 6 888875422  24555566652  34556


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +...|  +||.+.+|..+..             .......+.+||+++.    .++++|+++++++|++++++++
T Consensus       327 ~~~~l~~~gi~v~~g~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~  388 (405)
T 2vi8_A          327 AEKVLDEVGITVNKNTIPYD-------------PESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG  388 (405)
T ss_dssp             HHHHHHHHTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHcCceeccCcCccc-------------cCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc
Confidence            66666  6999988764210             0001123689999986    4679999999999999987654

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.97  E-value=4.2e-29  Score=252.19  Aligned_cols=338  Identities=17%  Similarity=0.162  Sum_probs=242.1

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GASPKEIIFTSGATE  129 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~i~~t~g~T~  129 (457)
                      +.+.|+|..+.+. +.++++.+++.+.+.....++.  .+.|+  ......++++.+++++    +++++++++|+|+++
T Consensus        68 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~--~~~y~--~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~  143 (449)
T 3qgu_A           68 DAKIISLGIGDTTEPLPKYIADAMAKAAAGLATREG--YSGYG--AEQGQGALREAVASTFYGHAGRAADEIFISDGSKC  143 (449)
T ss_dssp             TCCCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCC--CCCST--TTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHH
T ss_pred             CCCEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccC--CCCCC--CCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHH
Confidence            4568888887666 6889999999999875432111  11222  2234678899999998    778889999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE----------EEEEeCCCCC--CCCHHHHHHhcCCCc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE----------ITYLPVGADG--IVNLDELRAAIRPDT  197 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~----------v~~v~~~~~~--~~d~~~le~~i~~~t  197 (457)
                      ++.++ .++.    ++||+|+++.+.|.++...++..   |.+          ++.++.+.++  ..|++++     +++
T Consensus       144 al~~~-~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  210 (449)
T 3qgu_A          144 DIARI-QMMF----GSKPTVAVQDPSYPVYVDTSVMM---GMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA-----KRT  210 (449)
T ss_dssp             HHHHH-HHHH----CSSSCEEEEESCCTHHHHHHHHH---TCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC-----CCC
T ss_pred             HHHHH-HHHh----CCCCEEEEcCCCChhHHHHHHHc---CCcccccccccceeEEEecccccCCcCChhHc-----CCC
Confidence            99998 7777    89999999999999999888877   877          9999987543  3344321     678


Q ss_pred             eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----CcccCCC----CcccEEEeccccccCCCC--
Q 040741          198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPVDVEK----WNVSLMSLSGHKIYGPKG--  264 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~----~~~Di~~~s~~K~~g~~G--  264 (457)
                      ++|++++++||+|.+.+   +++|+++|++||+++|+|++|+...    .+..+..    .+.++++.|++|.+|..|  
T Consensus       211 ~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r  290 (449)
T 3qgu_A          211 DIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGVR  290 (449)
T ss_dssp             SEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTCC
T ss_pred             CEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccce
Confidence            89999999999999987   7788889999999999999998632    2222221    256799999999887554  


Q ss_pred             ceEEEEecCCCcc-ccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          265 VGALYMRRRPRIR-VEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       265 ~G~l~~~~~~~~~-~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                      +|+++++++.++. .................+.+.....++.++++. ..+.+++..++++++++++.+.|++ + ++.+
T Consensus       291 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~  368 (449)
T 3qgu_A          291 LGWTVVPKALKYANGEPVHADWNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTE-M-GFSV  368 (449)
T ss_dssp             CEEEECCTTCBCTTSCBHHHHHHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCE
T ss_pred             eEEEecCHHHHhhhhhhHHHHHHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH-C-CCee
Confidence            8999998876553 000000000001112235666666666666654 3345788899999999999999999 5 6766


Q ss_pred             eCCCCCcccceEEEEEccccchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          343 NGSMERRYIGNLNLSFAYVEGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      ..+..   ..++.+.+++.+..++...|  + ||.+.+|..|.+                 ...++|||++..  ++++|
T Consensus       369 ~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~-----------------~~~~~iRis~~~--~~e~i  426 (449)
T 3qgu_A          369 YGGDD---APYIWVGFPGKPSWDVFAEILERCNIVTTPGSGYGP-----------------AGEGFVRASAFG--SRENI  426 (449)
T ss_dssp             EESSS---SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECCS--CHHHH
T ss_pred             eCCCC---eeEEEEECCCCCHHHHHHHHHHHCCEEEecchHhCC-----------------CCCCeEEEEecC--CHHHH
Confidence            65322   34455555545566776655  3 999999887643                 123899999654  89999


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEKL  433 (457)
Q Consensus       420 d~~~~~l~~~~~~~  433 (457)
                      ++++++|++++++.
T Consensus       427 ~~~l~~l~~~~~~~  440 (449)
T 3qgu_A          427 LEAVRRFKEAYGKR  440 (449)
T ss_dssp             HHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987643

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.97  E-value=9.6e-29  Score=248.76  Aligned_cols=300  Identities=15%  Similarity=0.127  Sum_probs=222.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      .....+...++++++++++|++++++++++|+|.+++.++.++..   ++|++|+++.++|+++..+++. ++..|++++
T Consensus       103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~---~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~v~  179 (438)
T 1wyu_A          103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLL  179 (438)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhc---CCCCEEEEcCccCHhHHHHHHHHHHHCCCEEE
Confidence            345567899999999999999877789999999655555554432   6899999999999999988764 355699999


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehh-hhcCCCcccCCCCcccEEE
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAA-QALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a-~~~g~~~~~~~~~~~Di~~  253 (457)
                      .++. .++.+|+++    |+++|++|+++++ |++|.+.|+++|.++|+++|+++|+|.. +++|..... ..+++|+++
T Consensus       180 ~v~~-~~~~~d~~~----i~~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~~~-~~~g~D~~~  252 (438)
T 1wyu_A          180 TLPL-EGGRTPLPE----VGEEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLKPP-GAYGADIAV  252 (438)
T ss_dssp             EECC-BTTBCCCCC----CCTTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBCCH-HHHTCSEEE
T ss_pred             EEcC-cCCccCHHH----hCCCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcCCC-ccCCCCEEE
Confidence            9997 467788776    7889999999998 9999999999999999999999997754 556654333 345789999


Q ss_pred             ecccc-----c-cCCCCceEEEEecCCCccccccccCCc-----------------cccccccCCCCh---hHHHHHHHH
Q 040741          254 LSGHK-----I-YGPKGVGALYMRRRPRIRVEPLINGGG-----------------QERGIRSGTLPT---PLIVGFGSA  307 (457)
Q Consensus       254 ~s~~K-----~-~g~~G~G~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~t~~~---~~~~al~~a  307 (457)
                      +|.+|     + +|| |+|+++++++..+++.....|+.                 +..+...+++++   ..+.++.++
T Consensus       253 ~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa  331 (438)
T 1wyu_A          253 GDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGA  331 (438)
T ss_dssp             EECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHH
T ss_pred             ECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHHHH
Confidence            99766     2 345 79999999887666544332211                 001223456665   455555444


Q ss_pred             --HHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe--cccCc
Q 040741          308 --CEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV--SSGSA  380 (457)
Q Consensus       308 --l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~--~~g~~  380 (457)
                        +.... ++++++.++..++++++.+.|++ ++++++..+.  .....+.+.+. .+..++...|  +||.+  .++.+
T Consensus       332 ~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~--~~~~~~~~~~~-~~~~~~~~~L~~~gi~v~~~~~~~  407 (438)
T 1wyu_A          332 MYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTPK--PFFNEFALALP-KDPEAVRRALAERGFHGATPVPRE  407 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSCS--SBCSEEEEECS-SCHHHHHHHHHHTTCCCCEECCTT
T ss_pred             HHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc-CCCeEECCCC--CeEEEEEEeCC-CCHHHHHHHHHHCCceeccccccc
Confidence              44443 35888999999999999999999 8899987642  22333334433 3456676666  57776  44443


Q ss_pred             cCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          381 CTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       381 ~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      |.                    .+.|||++..++|++|+++++++|++++
T Consensus       408 ~~--------------------~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          408 YG--------------------ENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             SC--------------------SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             cC--------------------CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence            21                    3799999999999999999999998763

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=99.97  E-value=9.3e-30  Score=250.73  Aligned_cols=294  Identities=17%  Similarity=0.179  Sum_probs=226.3

Q ss_pred             HHHHHHHHHHHHh-CCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          102 AVETARSQIADLI-GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       102 ~~~~~~~~la~~~-g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ...++++.+++++ +++++++++++|||+|+.++++++.    ++||+|++..+.|.++...++..   |.+++.++.+.
T Consensus        64 g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~----~~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~  136 (375)
T 3op7_A           64 GSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSLI----EPGDHVISLYPTYQQLYDIPKSL---GAEVDLWQIEE  136 (375)
T ss_dssp             CCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESSCTHHHHHHHHT---TCEEEEEEEEG
T ss_pred             ChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeccc
Confidence            3568999999988 5677889999999999999999998    89999999999999988776655   99999998873


Q ss_pred             --CCCCCHHHHHHhcCCCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---ccCCCCcccEE
Q 040741          181 --DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP---VDVEKWNVSLM  252 (457)
Q Consensus       181 --~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~~~~~~Di~  252 (457)
                        ++.+|++++++++++++++|++++++||+|.+.|   +++|.++|++||+++|+|++|+.....   .-....+.+++
T Consensus       137 ~~~~~~d~~~l~~~l~~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~  216 (375)
T 3op7_A          137 ENGWLPDLEKLRQLIRPTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIA  216 (375)
T ss_dssp             GGTTEECHHHHHHHCCTTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEE
T ss_pred             cCCCCCCHHHHHHhhccCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEE
Confidence              3458999999999999999999999999999999   999999999999999999999864332   11112345688


Q ss_pred             EeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       253 ~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      +.|++|.+|.+|  +|+++++++..+++......+       ..+.+.....++..+++.....+++..++++++++++.
T Consensus       217 ~~s~sK~~~~~G~r~G~v~~~~~l~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~  289 (375)
T 3op7_A          217 VNSLSKTYSLPGIRIGWVAANHQVTDILRDYRDYT-------MICAGVFDDLVAQLALAHYQEILERNRHILEENLAILD  289 (375)
T ss_dssp             EEESSSSSSCGGGCCEEEECCHHHHHHHTTTGGGT-------TSCCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeEChhhcCCcccceEEEEeCHHHHHHHHHHHhhh-------ccCCCcHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            999999877544  699999776666555433221       12445555665656666555557788888899999999


Q ss_pred             HHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          331 NGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       331 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      +.|++ .+++.+..+..   ...+.+.++ ..+..++...+   +||.+.+|..|..                   .+++
T Consensus       290 ~~l~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~-------------------~~~i  346 (375)
T 3op7_A          290 QWIEE-EPLVSYIRPAV---VSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER-------------------DGYV  346 (375)
T ss_dssp             HHHHH-CTTEEECCCSS---SSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEE
T ss_pred             HHHhh-CCCceEecCCC---eEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC-------------------CCeE
Confidence            99999 88888765322   222334443 23455665554   5999998875532                   2799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ||+++.  +.+++++++++|++++++++
T Consensus       347 Ri~~~~--~~~~i~~~l~~l~~~l~~~~  372 (375)
T 3op7_A          347 RLGFAC--EQETLIKGLEKLSQFLRRFD  372 (375)
T ss_dssp             EECCCS--CHHHHHHHHHHHHHHHGGGC
T ss_pred             EEEecC--CHHHHHHHHHHHHHHHHHHh
Confidence            999876  45999999999999987653

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.1e-29  Score=253.05  Aligned_cols=333  Identities=14%  Similarity=0.134  Sum_probs=239.9

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~  127 (457)
                      ..+.|.|..+.+. +.++.+.+++.+.+... +     .+.|+.  .....++++.+++++    |  ++++++++|+||
T Consensus        56 ~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~-~-----~~~Y~~--~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~  127 (447)
T 3b46_A           56 GRELINLGQGFFSYSPPQFAIKEAQKALDIP-M-----VNQYSP--TRGRPSLINSLIKLYSPIYNTELKAENVTVTTGA  127 (447)
T ss_dssp             TSCCEECCCCSCSSCCCHHHHHHHHHHTTSG-G-----GGSCCC--TTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHH
T ss_pred             CCCeEEccCCCCCCCCCHHHHHHHHHHHhCc-C-----CCCCCC--CCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCH
Confidence            3466777766554 56799999999987641 0     011111  012345556666654    5  355689999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC------------CCCCCHHHHHHhcCC
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA------------DGIVNLDELRAAIRP  195 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~------------~~~~d~~~le~~i~~  195 (457)
                      ++|+.++++++.    ++|++|++..+.|.++...++..   |.+++.++.+.            ++.+|+++|++++++
T Consensus       128 ~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~  200 (447)
T 3b46_A          128 NEGILSCLMGLL----NAGDEVIVFEPFFDQYIPNIELC---GGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS  200 (447)
T ss_dssp             HHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT
T ss_pred             HHHHHHHHHHHc----CCCCEEEEeCCCchhHHHHHHHc---CCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc
Confidence            999999999987    89999999999999998877655   99999998753            357899999999999


Q ss_pred             CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCC-----CCcccEEEeccccccCCCC
Q 040741          196 DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVE-----KWNVSLMSLSGHKIYGPKG  264 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~-----~~~~Di~~~s~~K~~g~~G  264 (457)
                      ++++|++++++||+|.+.+   +++|+++|++||+++|+|++|+....   ...+.     ..+.|+++.|++|.+|.+|
T Consensus       201 ~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G  280 (447)
T 3b46_A          201 KTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATG  280 (447)
T ss_dssp             TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTT
T ss_pred             CCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcc
Confidence            9999999999999999975   88999999999999999999985322   11111     2367899999999888666


Q ss_pred             --ceEEEE-ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          265 --VGALYM-RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       265 --~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                        +|++++ +++.++.+.....       ....+.+.....++.++++..  ...+++..++++++++++.+.|.+ + +
T Consensus       281 ~riG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g  351 (447)
T 3b46_A          281 WRIGWVLSLNAELLSYAAKAHT-------RICFASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDE-L-G  351 (447)
T ss_dssp             SCCEEEECSCHHHHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH-H-T
T ss_pred             hhhEEEEeCCHHHHHHHHHHHh-------hccCCCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHH-C-C
Confidence              999999 7665555443221       112255666677777777765  334788899999999999999998 4 6


Q ss_pred             eEEeCCCCCcccceEEEEEccc----------------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          340 VVVNGSMERRYIGNLNLSFAYV----------------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +.+..+. .  +.++.+.++..                +..++...|   +||.+.+|..|.....            ..
T Consensus       352 ~~~~~~~-~--g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~------------~~  416 (447)
T 3b46_A          352 LPYTAPE-G--TYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEH------------EK  416 (447)
T ss_dssp             CCEECCS-B--SSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGG------------GG
T ss_pred             CeecCCC-e--eEEEEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCc------------cC
Confidence            6665432 1  33444555432                234565544   5999998876543100            01


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ...++|||++..  ++++|++++++|++
T Consensus       417 ~~~~~iRls~~~--~~e~l~~~~~~l~~  442 (447)
T 3b46_A          417 AAENLLRFAVCK--DDAYLENAVERLKL  442 (447)
T ss_dssp             GGTTEEEEECCS--CHHHHHHHHHHGGG
T ss_pred             CCCCEEEEEEeC--CHHHHHHHHHHHHH
Confidence            124799999985  79999999998876

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.97  E-value=3.6e-29  Score=248.86  Aligned_cols=323  Identities=17%  Similarity=0.128  Sum_probs=232.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      .+|++.+++.+.+.....+++.  +...+...+...++++.+++++|. ++++++++|++ ++..++..+...  .+|++
T Consensus        61 ~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~-~~~i~~~sG~~-a~~~~~~~l~~~--~~gd~  134 (401)
T 2bwn_A           61 QHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQK-EAALVFSSAYN-ANDATLSTLRVL--FPGLI  134 (401)
T ss_dssp             GCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTC-SEEEEESCHHH-HHHHHHHHHHHH--STTCE
T ss_pred             CCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCC-CcEEEECCcHH-HHHHHHHHHhcC--CCCCE
Confidence            5789999999998775444442  122222336788999999999997 45677766544 777777765421  58899


Q ss_pred             EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHHHHh
Q 040741          149 VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQICKE  224 (457)
Q Consensus       149 vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l~~~  224 (457)
                      |+++.++|+++..+++..   |.+++.++.+     |+++++++++    +++++|++++++||+|.+.|+++|.++|++
T Consensus       135 Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~  206 (401)
T 2bwn_A          135 IYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAEE  206 (401)
T ss_dssp             EEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHHH
T ss_pred             EEECchhhHHHHHHHHHc---CCeEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHHH
Confidence            999999999998877654   9999999875     7888888886    688999999999999999999999999999


Q ss_pred             cCCcEEEehhhhcCCCcc---cC---CC--CcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCC
Q 040741          225 FKIPFHTDAAQALGKIPV---DV---EK--WNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTL  296 (457)
Q Consensus       225 ~~v~li~D~a~~~g~~~~---~~---~~--~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~  296 (457)
                      ||+++|+|++|+.|....   .+   ..  .+.|+++.|++|.+|..| |+++.+++..+.+......    ..+..+++
T Consensus       207 ~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G-G~~~~~~~~~~~l~~~~~~----~~~~~~~~  281 (401)
T 2bwn_A          207 FGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVRSYAPG----FIFSTSLP  281 (401)
T ss_dssp             HTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHHHHCHH----HHTSBCCC
T ss_pred             cCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC-CEEecCHHHHHHHHHhCcC----ceecCCCC
Confidence            999999999999553211   00   11  135899999999988777 9998876554443321111    01223343


Q ss_pred             ChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc---c
Q 040741          297 PTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL---K  371 (457)
Q Consensus       297 ~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l---~  371 (457)
                      + ..++++.++++.+.. ++++..++.+++++++.+.|.+ + ++.+.++.    .+++.+.++. .+..++...|   +
T Consensus       282 ~-~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~~~~  354 (401)
T 2bwn_A          282 P-AIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA-L-GMPIIDHG----SHIVPVVIGDPVHTKAVSDMLLSDY  354 (401)
T ss_dssp             H-HHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCCS----SSCEEEECCCHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-C-CCcccCCC----CCeEEEEeCChHHHHHHHHHHHhcC
Confidence            3 666677778877654 3688899999999999999998 5 77665432    2355555542 3345666555   3


Q ss_pred             CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          372 EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       372 ~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||.+.++..+.              .+  .+.+++||+++.+++++|+++++++|+++++++
T Consensus       355 gi~v~~~~~~~--------------~~--~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~~  400 (401)
T 2bwn_A          355 GVYVQPINFPT--------------VP--RGTERLRFTPSPVHDLKQIDGLVHAMDLLWARC  400 (401)
T ss_dssp             CEECCEECTTT--------------SC--TTCCEEEECCCTTSCHHHHHHHHHHHHHHC---
T ss_pred             CEEEeecCCCC--------------CC--CCCceEEEEeeCCCCHHHHHHHHHHHHHHHHhc
Confidence            88887764321              11  123689999999999999999999999987654

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=1.8e-29  Score=253.82  Aligned_cols=343  Identities=14%  Similarity=0.139  Sum_probs=240.5

Q ss_pred             cCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCC-CC--CccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEE
Q 040741           54 IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNP-HS--RTHLFGWESEVAVETARSQIADLIG--------ASPKEII  122 (457)
Q Consensus        54 ~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p-~~--~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~  122 (457)
                      +..+.|.|+.+.+..+.+.+.+++.+......-.+ .+  .....+|.......++++.++++++        +++++++
T Consensus        36 ~p~~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~  115 (435)
T 3piu_A           36 NTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLV  115 (435)
T ss_dssp             BTTSBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEE
T ss_pred             CCCCeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEE
Confidence            34567889888877777777777776543211000 00  0000122222334678888888887        6678899


Q ss_pred             EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCC-----
Q 040741          123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRP-----  195 (457)
Q Consensus       123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~-----  195 (457)
                      +|+|||+|+.++++++.    ++|+.|+++.+.|.++...+..  ..|.+++.++.+.+  ..+|+++|++++++     
T Consensus       116 ~~~gg~~a~~~~~~~l~----~~gd~vl~~~p~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~  189 (435)
T 3piu_A          116 LTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKW--RTGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN  189 (435)
T ss_dssp             EEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTT--TTCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred             EcCChHHHHHHHHHHhc----CCCCeEEECCCccccHHHHHHH--hcCCEEEEeeCCCccCCcCCHHHHHHHHHHHHhcC
Confidence            99999999999999998    8999999999999998876541  34999999998743  45899999999975     


Q ss_pred             -CceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----ccCC----C---------CcccEEEe
Q 040741          196 -DTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VDVE----K---------WNVSLMSL  254 (457)
Q Consensus       196 -~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~----~---------~~~Di~~~  254 (457)
                       ++++|++++++||+|.+.|   +++|+++|++||+++|+|++|+.+...    ....    +         .+.++++.
T Consensus       190 ~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~  269 (435)
T 3piu_A          190 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY  269 (435)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEE
T ss_pred             CCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEE
Confidence             7899999999999999988   578888899999999999999853221    1110    1         22348899


Q ss_pred             ccccccCCCC--ceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHH
Q 040741          255 SGHKIYGPKG--VGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDR  328 (457)
Q Consensus       255 s~~K~~g~~G--~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~  328 (457)
                      |++|.+|.+|  +|+++++++ ....+....         ..+..+.....++.++++.   +.+.+++..+++++++++
T Consensus       270 s~sK~~g~~G~r~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  340 (435)
T 3piu_A          270 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMS---------SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKK  340 (435)
T ss_dssp             ESSSSSCCGGGCEEEEEESCHHHHHHHHHHG---------GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecccCCCceeEEEEEeCCHHHHHHHHHHh---------hcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH
Confidence            9999887554  799998543 322222211         1123445555555444442   233467788889999999


Q ss_pred             HHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCC
Q 040741          329 LLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       329 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                      +.+.|++ . ++.+..+..   +.++.+.++..       +..++...+  + ||.+.+|..|.+.              
T Consensus       341 l~~~L~~-~-g~~~~~~~~---g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~--------------  401 (435)
T 3piu_A          341 LVSGLQK-S-GISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT--------------  401 (435)
T ss_dssp             HHHHHHT-T-TCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS--------------
T ss_pred             HHHHHHh-c-CCcccCCCe---eEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCC--------------
Confidence            9999998 4 777765321   24455555432       233555555  4 9999998876531              


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                         ..+++||+++.. +++++++++++|++++++++
T Consensus       402 ---~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~~~~  433 (435)
T 3piu_A          402 ---EPGWFRVCFANL-PERTLDLAMQRLKAFVGEYY  433 (435)
T ss_dssp             ---STTEEEEECSSS-CHHHHHHHHHHHHHHHHHHC
T ss_pred             ---CCCEEEEEeeCC-CHHHHHHHHHHHHHHHHHHh
Confidence               237999999766 89999999999999998765

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.97  E-value=9.6e-30  Score=246.36  Aligned_cols=296  Identities=15%  Similarity=0.113  Sum_probs=210.1

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCC
Q 040741          105 TARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGI  183 (457)
Q Consensus       105 ~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~  183 (457)
                      ++++.+++++|.+  +.+++++||+|+++++.++.    ++|++|+++.++|.++...+.. ++..|+++++++.     
T Consensus         2 ~l~~~la~~~g~~--~~i~~~sG~~a~~~~~~~~~----~~g~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----   70 (331)
T 1pff_A            2 ALEGKIAKLEHAE--ACAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDM-----   70 (331)
T ss_dssp             HHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECT-----
T ss_pred             hHHHHHHHHhCCC--eEEEeCChHHHHHHHHHHhc----CCCCEEEEcCCCcchHHHHHHHHHHhcCCEEEEeCC-----
Confidence            6889999999986  45566667999999999887    7899999999999998877654 3556999999986     


Q ss_pred             CCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh-cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-
Q 040741          184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE-FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-  261 (457)
Q Consensus       184 ~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~-~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-  261 (457)
                      .|++++++++++++++|++++++||+|.+.|+++|.++|++ +|+++|+|++|+.|....+. .++.|++++|+||++| 
T Consensus        71 ~d~~~l~~~i~~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~-~~~~d~~~~s~~K~~~~  149 (331)
T 1pff_A           71 AVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL-DLGVDIVVHSATKYING  149 (331)
T ss_dssp             TSTTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG-GGTCSEEEEETTTTTSS
T ss_pred             CCHHHHHHhhcCCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh-hcCCcEEEEECccccCC
Confidence            38899999999999999999999999999999999999999 99999999999877643333 4578999999999665 


Q ss_pred             CCC--ceEEEEec-CCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc-
Q 040741          262 PKG--VGALYMRR-RPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK-  336 (457)
Q Consensus       262 ~~G--~G~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~-  336 (457)
                      |.+  +|++++++ +..+++.+...+ ++       ++.+.....++..+++..    ....++..++.+.+.+.+++. 
T Consensus       150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~l~~~~  218 (331)
T 1pff_A          150 HTDVVAGLVCSRADIIAKVKSQGIKDITG-------AIISPHDAWLITRGTLTL----DMRVKRAAENAQKVAEFLHEHK  218 (331)
T ss_dssp             SSSCCCEEEEECHHHHHHHHHTCCCCCCC-------CCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCCceEEEEEeCcHHHHHHHHHHHHhhcC-------CCCCHHHHHHHHcCcchH----HHHHHHHHHHHHHHHHHHHcCC
Confidence            544  78999987 666666554433 21       245555444444444432    333444455555555555441 


Q ss_pred             ------------CCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc---------CccCCCC--CChhHH
Q 040741          337 ------------LDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG---------SACTSAS--LEPSYV  391 (457)
Q Consensus       337 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g---------~~~~~~~--~~~~~~  391 (457)
                                  ++++.+.++.....++++.+.+.  +..++...+  .||.+...         .+|.+..  ..++.+
T Consensus       219 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~gI~~~~~s~g~~~sl~~~~~~~~~~~~~~~~  296 (331)
T 1pff_A          219 AVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD--GLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEE  296 (331)
T ss_dssp             TCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS--SHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHH
T ss_pred             CeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC--CHHHHHHHHHhCCCceeccCCCCcceeeecchhhcccccCHHH
Confidence                        12222222111224566666664  445555555  57755433         2443221  234455


Q ss_pred             HHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       392 l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +..+|+++    +.|||+++..++++++++++++|+++
T Consensus       297 ~~~~g~~~----~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          297 REAAGLTD----NLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             HHHTTCCT----TEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             HHhcCCCC----CeEEEEEecCCHHHHHHHHHHHHHHh
Confidence            66777653    89999999999999999999998754

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.97  E-value=3e-28  Score=247.14  Aligned_cols=345  Identities=12%  Similarity=0.082  Sum_probs=238.2

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC---------cEEEeCC
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK---------EIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~---------~i~~t~g  126 (457)
                      .++-|+++-.++..++.++..+.....    |+....+..+....+...++.+++++++|.+.+         .++||+|
T Consensus        72 ~~p~~~~~~~~~~~~~~~~~~~l~~~~----n~~~~~~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~g  147 (475)
T 3k40_A           72 HSPKFHAYFPTANSYPAIVADMLSGAI----ACIGFTWIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGT  147 (475)
T ss_dssp             TCTTBCCSSCCCCCHHHHHHHHHHHHH----CCCSSSCCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESC
T ss_pred             CCcCceeeCCCCCcHHHHHHHHHHHHh----CccccCccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCc
Confidence            345577776555444444433333222    111223333445556667788899999998753         5999999


Q ss_pred             hHHHHHHHHHHhhhhhc---------------CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741          127 ATESNNVSIKGVMHFYK---------------DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~---------------~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~  191 (457)
                      ||+|+.+++.+.+....               .+++.|+++..+|.++..+++..   |++++.++++.++ +|+++|++
T Consensus       148 gt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~---g~~~~~v~~d~~~-~d~~~L~~  223 (475)
T 3k40_A          148 ASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLG---GVKLRSVQSENHR-MRGAALEK  223 (475)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHH---TCEEEEECCBTTB-CCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHHHHHHc---CCceEEEECCCCC-cCHHHHHH
Confidence            99999999998764321               13468999999999999998877   9999999999889 99999999


Q ss_pred             hcCCC------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CCC-CcccEEEecccc-
Q 040741          192 AIRPD------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VEK-WNVSLMSLSGHK-  258 (457)
Q Consensus       192 ~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~~-~~~Di~~~s~~K-  258 (457)
                      +|+++      +.+|++++++|++|.+.|+++|+++|++||+++|+|+|++.+....+     ... ..+|++++++|| 
T Consensus       224 ~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~  303 (475)
T 3k40_A          224 AIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKW  303 (475)
T ss_dssp             HHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHH
T ss_pred             HHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhc
Confidence            99764      67888999999999999999999999999999999999987654211     111 146999999999 


Q ss_pred             ccCCCCceEEEEecCCC-cc-c---cccccCCccc--c-----ccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHH
Q 040741          259 IYGPKGVGALYMRRRPR-IR-V---EPLINGGGQE--R-----GIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITAL  325 (457)
Q Consensus       259 ~~g~~G~G~l~~~~~~~-~~-~---~~~~~~~~~~--~-----~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~  325 (457)
                      +++|.|+|+++++++.. .+ +   .+++......  .     ....+. + ....++..++..+. ++++++.++..++
T Consensus       304 l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~sr-~-~~~l~l~~al~~~g~~g~~~~~~~~~~~  381 (475)
T 3k40_A          304 MLVNFDCSAMWLKDPSWVVNAFNVDPLYLKHDMQGSAPDYRHWQIPLGR-R-FRALKLWFVLRLYGVENLQAHIRRHCNF  381 (475)
T ss_dssp             SSCCSSCEEEEESSGGGC---------------------------CCCG-G-GTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEEeCHHHHHHHhcCCccccCCCcCCCCCCcccccccCCC-c-ccHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            66788999999987532 11 1   1111110000  0     000111 1 12344455555443 4689999999999


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCeEe-cccCccCCCCCChhHHHHHcCCCcc
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEVAV-SSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i~~-~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      ++++.+.|++ ++++++..++.   .+++.|.+++.+  ..++...|  +|+.+ .++.                    .
T Consensus       382 a~~l~~~L~~-~~g~~l~~~~~---~~iv~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------------~  437 (475)
T 3k40_A          382 AKQFGDLCVA-DSRFELAAEIN---MGLVCFRLKGSNERNEALLKRINGRGHIHLVPAK--------------------I  437 (475)
T ss_dssp             HHHHHHHHHH-STTEEESSCCB---TTEEEEEESSCHHHHHHHHHHHHHHTSCBCEEEE--------------------E
T ss_pred             HHHHHHHHhc-CCCEEEecCCc---eEEEEEEeCCchHHHHHHHHHHHhCCcEEEEeeE--------------------E
Confidence            9999999999 89999987542   566777775422  24455555  23322 2111                    1


Q ss_pred             CCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       401 ~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .+...+||++.. .++++||++++++|+++++++.
T Consensus       438 ~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~~~  472 (475)
T 3k40_A          438 KDVYFLRMAICSRFTQSEDMEYSWKEVSAAADEME  472 (475)
T ss_dssp             TTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            123799999764 5689999999999999998764

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.97  E-value=1.9e-29  Score=250.33  Aligned_cols=330  Identities=15%  Similarity=0.165  Sum_probs=234.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDKK  146 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~g  146 (457)
                      .+++++.+++.+.+.+.+.++.      |    +...++++.+++++|.  +++++++|||+|++++++++ .    ++|
T Consensus         9 ~~~~~v~~a~~~~~~~~~~~~~------g----~~~~~l~~~la~~~~~--~~v~~~~ggt~al~~~~~~l~~----~~g   72 (394)
T 1o69_A            9 HMGGNELKYIEEVFKSNYIAPL------G----EFVNRFEQSVKDYSKS--ENALALNSATAALHLALRVAGV----KQD   72 (394)
T ss_dssp             ---CCHHHHHHHHHHHTTTSCT------T----HHHHHHHHHHHHHHCC--SEEEEESCHHHHHHHHHHHTTC----CTT
T ss_pred             CCCHHHHHHHHHHHHcCCccCC------C----hHHHHHHHHHHHHhCC--CcEEEeCCHHHHHHHHHHHcCC----CCC
Confidence            4667889999988865332211      1    5688999999999997  46999999999999999998 6    789


Q ss_pred             CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC---CceEEEEeccccccccccChHHHHHHHH
Q 040741          147 RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQPMEEIGQICK  223 (457)
Q Consensus       147 ~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~l~~i~~l~~  223 (457)
                      ++|+++.++|.++..+++..   |++++.++.+.++.+|++++++++++   ++++|++++   ++|...++++|.++|+
T Consensus        73 d~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~l~~i~~l~~  146 (394)
T 1o69_A           73 DIVLASSFTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH---LYGNAAKMDEIVEICK  146 (394)
T ss_dssp             CEEEEESSSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCCHHHHHHHHH
T ss_pred             CEEEECCCccHHHHHHHHHc---CCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC---CCCChhhHHHHHHHHH
Confidence            99999999999999887765   99999999987788999999999976   789998886   6999999999999999


Q ss_pred             hcCCcEEEehhhhcCCCcccCC--C-CcccEEEeccccccCCCCceEEEEe-cCCCccccccccCC--------cccccc
Q 040741          224 EFKIPFHTDAAQALGKIPVDVE--K-WNVSLMSLSGHKIYGPKGVGALYMR-RRPRIRVEPLINGG--------GQERGI  291 (457)
Q Consensus       224 ~~~v~li~D~a~~~g~~~~~~~--~-~~~Di~~~s~~K~~g~~G~G~l~~~-~~~~~~~~~~~~~~--------~~~~~~  291 (457)
                      ++|+++|+|++|+.|....+..  . .++|++++|.+|.+|+.++|+++++ ++..+++......+        ....++
T Consensus       147 ~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~  226 (394)
T 1o69_A          147 ENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGY  226 (394)
T ss_dssp             HTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCC
T ss_pred             HcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCc
Confidence            9999999999999765432211  1 3578888888998887779999996 45555554332211        012233


Q ss_pred             ccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc--eEEEEEcc---------
Q 040741          292 RSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG--NLNLSFAY---------  360 (457)
Q Consensus       292 ~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~---------  360 (457)
                      ++++++....+++.. +    +.+++..++.+++++++.+.|.+ +  +.+.++.....++  ++.+.++.         
T Consensus       227 ~~~~~~~~aa~~l~~-l----~~l~~~~~~~~~~~~~l~~~L~~-~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  298 (394)
T 1o69_A          227 NYRLSNVLGAIGVAQ-M----EVLEQRVLKKREIYEWYKEFLGE-Y--FSFLDELENSRSNRWLSTALINFDKNELNACQ  298 (394)
T ss_dssp             BCBCCHHHHHHHHHH-H----TTHHHHHHHHHHHHHHHHHHHTT-T--EECCCCCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred             ccCcCHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHhcc-c--ccccCCCCCCcceeEEEEEEecchhhcccccc
Confidence            344554444443322 2    23566778899999999999988 5  6665543221122  35566652         


Q ss_pred             -------------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---C--CCccCCCCeEEEecCCCCCHHHHH
Q 040741          361 -------------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---G--VDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       361 -------------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g--~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                                   .+..++...|  +||.+++|..|...  .|  .+..+   +  +......+.+|+.++.++|+||+|
T Consensus       299 ~~~~~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~~~~--~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~  374 (394)
T 1o69_A          299 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHT--QE--VFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVY  374 (394)
T ss_dssp             EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGG--CG--GGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHH
T ss_pred             ccccccccccccccCHHHHHHHHHHcCCcccccCCcccc--ch--hhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHH
Confidence                         2455666666  69999988654210  11  11111   0  111112256778888899999999


Q ss_pred             HHHHHHHHHHH
Q 040741          421 RAIELTVKQVE  431 (457)
Q Consensus       421 ~~~~~l~~~~~  431 (457)
                      +++++|+++++
T Consensus       375 ~~~~~l~~~~~  385 (394)
T 1o69_A          375 EISKLILKSIK  385 (394)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.97  E-value=4.6e-28  Score=247.90  Aligned_cols=348  Identities=16%  Similarity=0.162  Sum_probs=238.5

Q ss_pred             CCcEEecCCCCCCCCHHHH-HHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATTPVDPRVL-DAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--PKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~~i~~t~g~T~a~~  132 (457)
                      ..+-||++-.+...++.++ +++...+..   +  ...+..+....+....+.+++++++|.+  ++.++||+|||+|+.
T Consensus        94 ~~p~f~~~~~~~~~~~~~~~e~l~~~~~~---~--~~~~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~  168 (511)
T 3vp6_A           94 GHPRFFNQLSTGLDIIGLAGEWLTSTANT---N--MFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNM  168 (511)
T ss_dssp             TSTTEESSSSCCCCHHHHHHHHHHHHHCC---C--SSCTTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHH
T ss_pred             CCCCceEeecCCCcHHHHHHHHHHHHhcc---C--CCCcccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHH
Confidence            4556888765554444444 444444421   1  1133334455566677888999999997  457999999999999


Q ss_pred             HHHHHhhhhh------c----CCCCEEEEcCCCCcchHHHHHHHHhcCc---EEEEEeCCCCCCCCHHHHHHhcCCC---
Q 040741          133 VSIKGVMHFY------K----DKKRHVITTQTEHKCVLDSCRHLQQEGF---EITYLPVGADGIVNLDELRAAIRPD---  196 (457)
Q Consensus       133 ~al~~~~~~~------~----~~g~~vi~~~~~h~~~~~~~~~~~~~G~---~v~~v~~~~~~~~d~~~le~~i~~~---  196 (457)
                      .++.++...+      .    .+++.|+++...|.++..+++.+   |.   +++.++++.++.+|+++|+++|+++   
T Consensus       169 ~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~~~---g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~  245 (511)
T 3vp6_A          169 YSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL---GFGTDNVILIKCNERGKIIPADFEAKILEAKQK  245 (511)
T ss_dssp             HHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT---TSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHHHc---CCCCCcEEEeecCCCCccCHHHHHHHHHHHHhc
Confidence            9998877421      0    15678999999999999998877   66   8999999988999999999999765   


Q ss_pred             ---ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-----CC-CCcccEEEeccccc-cCCCCce
Q 040741          197 ---TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-----VE-KWNVSLMSLSGHKI-YGPKGVG  266 (457)
Q Consensus       197 ---t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-----~~-~~~~Di~~~s~~K~-~g~~G~G  266 (457)
                         +++|++++++|++|.+.|+++|+++|++||+++|+|+||+.+....+     +. ..++|++++++||+ ++|.|+|
T Consensus       246 g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g  325 (511)
T 3vp6_A          246 GYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCS  325 (511)
T ss_dssp             TCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCE
T ss_pred             CCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeE
Confidence               88999999999999999999999999999999999999998766321     11 12579999999995 5688999


Q ss_pred             EEEEecCC-Ccccc----ccccCCcc----c-----cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHH
Q 040741          267 ALYMRRRP-RIRVE----PLINGGGQ----E-----RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       267 ~l~~~~~~-~~~~~----~~~~~~~~----~-----~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~  331 (457)
                      +++++++. +.+..    .++.....    .     .....+..  ....++..++... .++++++.++..++++++.+
T Consensus       326 ~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~~~r~--~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~  403 (511)
T 3vp6_A          326 AILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH--VDIFKFWLMWKAKGTVGFENQINKCLELAEYLYA  403 (511)
T ss_dssp             EEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGSSCSSCC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCHHHHHHHhccCCccccCcccccccccCccCCCCCCCCc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            99998753 22211    11111000    0     00001111  1234444555544 34689999999999999999


Q ss_pred             HHhhcCCCeEEeCCCCCcccceEEEEEcccc-----------------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-----------------GESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      .|++ .|++++..+... ..+++.|.+....                 ...+...|  +|+.+.....            
T Consensus       404 ~L~~-~pg~~l~~~~~p-~~~~v~f~~~p~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~------------  469 (511)
T 3vp6_A          404 KIKN-REEFEMVFNGEP-EHTNVCFWYIPQSLRGVPDSPQRREKLHKVAPKIKALMMESGTTMVGYQP------------  469 (511)
T ss_dssp             HHHS-CTTEEESSSSCC-SSSCEEEEECCGGGSSCCCCHHHHHHHHHHHHHHHHHHHHHTSCEEEEEE------------
T ss_pred             HHhc-CCCEEEEecCCC-CeEEEEEEEeCccccccccchhHHHHHHHHHHHHHHHHHhcCCEEEEEEE------------
Confidence            9999 899999873111 2344555543111                 01244444  3433322100            


Q ss_pred             HHcCCCccCCCCeEEEec-CCCCCHHHHHHHHHHHHHHHHHH
Q 040741          393 RALGVDEDMAHTSIRFGI-GRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~-~~~~t~edid~~~~~l~~~~~~~  433 (457)
                            .....+++||++ +..++.+||+++++.|++..+.+
T Consensus       470 ------~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~~~  505 (511)
T 3vp6_A          470 ------QGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL  505 (511)
T ss_dssp             ------ETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred             ------eCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence                  001124799999 67899999999999999887654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.97  E-value=2.4e-29  Score=251.68  Aligned_cols=348  Identities=15%  Similarity=0.114  Sum_probs=236.8

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcC
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKD  144 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~  144 (457)
                      ..++++++.+++.+.+.+.  +..+..+..|.  .+...++++.+++++|.+  ++++++|||+|++++++++ .    +
T Consensus        11 ~~~~~~~~~~a~~~~~~~~--~~~~~~~~~g~--~~l~~~l~~~la~~~g~~--~~i~~~~gt~al~~~~~~~~~----~   80 (418)
T 2c81_A           11 WPQHSDRTRRKIEEVFQSN--RWAISGYWTGE--ESMERKFAKAFADFNGVP--YCVPTTSGSTALMLALEALGI----G   80 (418)
T ss_dssp             SSCCCHHHHHHHHHHHHHT--CCSTTSBCCSS--CCHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTC----C
T ss_pred             CCCCCHHHHHHHHHHHhcC--CccccCcccCC--HHHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHcCC----C
Confidence            3467899999999998753  21111122222  246789999999999986  4888999999999999998 5    7


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHH
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICK  223 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~  223 (457)
                      +|++|+++.++|.++..+++..   |++++.++++. ++.+|++++++++++++++|+++   |++|...++++|.++|+
T Consensus        81 ~gd~Vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~~---~~~G~~~~~~~i~~~~~  154 (418)
T 2c81_A           81 EGDEVIVPSLTWIATATAVLNV---NALPVFVDVEADTYCIDPQLIKSAITDKTKAIIPV---HLFGSMANMDEINEIAQ  154 (418)
T ss_dssp             TTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHGGGCCTTEEEECCB---CCTTCCCCHHHHHHHHH
T ss_pred             CcCEEEECCCccHhHHHHHHHc---CCEEEEEecCCCCCCcCHHHHHHhhCCCCeEEEEe---CCcCCcccHHHHHHHHH
Confidence            8999999999999999887655   99999999985 67899999999999999988865   47999999999999999


Q ss_pred             hcCCcEEEehhhhcCCC-cc-cCCCCcccEEEecc--ccccCCCCceEEEEe-cCCCccccccccCCcccc--------c
Q 040741          224 EFKIPFHTDAAQALGKI-PV-DVEKWNVSLMSLSG--HKIYGPKGVGALYMR-RRPRIRVEPLINGGGQER--------G  290 (457)
Q Consensus       224 ~~~v~li~D~a~~~g~~-~~-~~~~~~~Di~~~s~--~K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~--------~  290 (457)
                      ++|+++|+|++|+.+.. .. ..... .|+.++|+  ||.+|+..+|+++.+ ++..+++.+....+....        .
T Consensus       155 ~~~~~li~D~a~~~~~~~~~~~~~~~-~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  233 (418)
T 2c81_A          155 EHNLFVIEDCAQSHGSVWNNQRAGTI-GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMHG  233 (418)
T ss_dssp             HTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCTT
T ss_pred             HCCCEEEEECcccccCccCCEecccc-cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCccccccccccccc
Confidence            99999999999998763 11 11111 24555555  998776346888875 444555544333322111        0


Q ss_pred             cc--cCCCChhH----HHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC--c-ccceEEEEEc-
Q 040741          291 IR--SGTLPTPL----IVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER--R-YIGNLNLSFA-  359 (457)
Q Consensus       291 ~~--~~t~~~~~----~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~~-  359 (457)
                      +.  .+++....    +..+.+++.. ..+.+++..++.+++++++.+.|.+ ++++.+..++..  . ...++.+.++ 
T Consensus       234 ~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~  312 (418)
T 2c81_A          234 DMQLVKKGDIQGSNYCLSEFQSAILLDQLQELDDKNAIREKNAMFLNDALSK-IDGIKVMKRPPQVSRQTYYGYVFRFDP  312 (418)
T ss_dssp             CBSEEECCSSCCCBCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-STTEEECCCCTTEEECCCSEEEEEECG
T ss_pred             hhhccccccccCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcccCCCCCCCcccccEEEEEEEcc
Confidence            11  10111100    0111122221 1234677888888999999999988 889988754432  1 1234446665 


Q ss_pred             ----cccchHHHhcc--c-CeE---ecccCccCCCCCChhHH-H-------------H-----HcCCCccCCCCeEEEec
Q 040741          360 ----YVEGESLLMGL--K-EVA---VSSGSACTSASLEPSYV-L-------------R-----ALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       360 ----~~~~~~~~~~l--~-~i~---~~~g~~~~~~~~~~~~~-l-------------~-----~~g~~~~~~~~~iRi~~  410 (457)
                          +.+..++...|  + ||.   +..|..+..  ..|.+. +             +     .++..+....+.|||++
T Consensus       313 ~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~  390 (418)
T 2c81_A          313 VKFGGLNADQFCEILREKLNMGTFYLHPPYLPVH--KNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVSERASGQSIVIHH  390 (418)
T ss_dssp             GGTTTCCHHHHHHHHHHHHTCCTTTEECCCCCGG--GCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHHHHHHHHEEEEEG
T ss_pred             ccccccCHHHHHHHHHHcCCCCcccccccccccc--cCchhcccccccccccccccccccccCCChHHHHHHhCEEEecC
Confidence                34667777777  5 898   877763311  111100 0             0     00000011236999999


Q ss_pred             CCCC-CHHHHHHHHHHHHHHHHHH
Q 040741          411 GRFT-TEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       411 ~~~~-t~edid~~~~~l~~~~~~~  433 (457)
                      +..+ |+||||+++++|+++++++
T Consensus       391 ~~~~gt~edi~~~~~~l~~~~~~~  414 (418)
T 2c81_A          391 AILLAEPSHLSLLVDAVAELARKF  414 (418)
T ss_dssp             GGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred             CccCCCHHHHHHHHHHHHHHHHhh
Confidence            9999 9999999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.96  E-value=6e-29  Score=247.19  Aligned_cols=342  Identities=15%  Similarity=0.115  Sum_probs=237.5

Q ss_pred             EecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      |+|+.... ++++++.+++.+.+...       .+  +.  .+...++++.+++++|.+  ++++++|||+|+.++++++
T Consensus        32 ~id~~~~~~~~~~~v~~a~~~~~~~~-------~y--~~--~~~~~~l~~~la~~~~~~--~~v~~~~Gt~a~~~~l~~~   98 (399)
T 2oga_A           32 FLDLKAAYEELRAETDAAIARVLDSG-------RY--LL--GPELEGFEAEFAAYCETD--HAVGVNSGMDALQLALRGL   98 (399)
T ss_dssp             SCCHHHHHHHTHHHHHHHHHHHHHHT-------CC--SS--SHHHHHHHHHHHHHTTSS--EEEEESCHHHHHHHHHHHT
T ss_pred             ccccCcCCCCCCHHHHHHHHHHHhcC-------CC--CC--chhHHHHHHHHHHHHCCC--eEEEecCHHHHHHHHHHHh
Confidence            44444333 34589999999987641       11  11  156788999999999986  5889999999999999998


Q ss_pred             -hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChH
Q 040741          139 -MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME  216 (457)
Q Consensus       139 -~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~  216 (457)
                       .    ++|++|+++.+.|+++..+++..   |.+++.++.+. ++.+|++++++++++++++|++   +|++|.+.|++
T Consensus        99 ~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~~---~n~tG~~~~l~  168 (399)
T 2oga_A           99 GI----GPGDEVIVPSHTYIASWLAVSAT---GATPVPVEPHEDHPTLDPLLVEKAITPRTRALLP---VHLYGHPADMD  168 (399)
T ss_dssp             TC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCSSSSSBCHHHHHHHCCTTEEEECC---BCGGGCCCCHH
T ss_pred             CC----CCcCEEEECCCccHHHHHHHHHC---CCEEEEEecCCCCCCcCHHHHHHhcCCCCeEEEE---eCCcCCccCHH
Confidence             5    78999999999999988876655   99999999875 5789999999999988888774   57899999999


Q ss_pred             HHHHHHHhcCCcEEEehhhhcCCCcccCCCCc--ccEEEecc--ccccCCCC-ceEEEEe-cCCCccccccccCCccccc
Q 040741          217 EIGQICKEFKIPFHTDAAQALGKIPVDVEKWN--VSLMSLSG--HKIYGPKG-VGALYMR-RRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       217 ~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~--~Di~~~s~--~K~~g~~G-~G~l~~~-~~~~~~~~~~~~~~~~~~~  290 (457)
                      +|.++|+++|+++|+|++|+.|... +....+  .|++++|+  +|++|+.| +|+++.+ ++..+++.+....+.... 
T Consensus       169 ~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~-  246 (399)
T 2oga_A          169 ALRELADRHGLHIVEDAAQAHGARY-RGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQK-  246 (399)
T ss_dssp             HHHHHHHHHTCEECEECTTCTTCEE-TTEETTCTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSST-
T ss_pred             HHHHHHHHcCCEEEEECcccccCcc-CCeecccccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcccc-
Confidence            9999999999999999999977542 222223  59999999  59887743 6888776 455555544333221110 


Q ss_pred             cc------cCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccch
Q 040741          291 IR------SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGE  364 (457)
Q Consensus       291 ~~------~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (457)
                      +.      ....+...++++..+++    .++...++.+++++++.+.|.+ ++++.+...++...+.++.+.+...+..
T Consensus       247 ~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~  321 (399)
T 2oga_A          247 YSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAG-LPGIGLPVTAPDTDPVWHLFTVRTERRD  321 (399)
T ss_dssp             TCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTT-CTTCBCCCCCTTEECCCSSEEEECSSHH
T ss_pred             ccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCcceeEEEEEECCCHH
Confidence            10      11344444444444443    3455667778889999999988 7887765433332222222444334556


Q ss_pred             HHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC-------CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          365 SLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM-------AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~-------~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++...|  +||.+..+.. .+  ......+..+|.....       ..+.|||+++..++++|+++++++|++++++++
T Consensus       322 ~l~~~L~~~gI~v~~~~~-~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l~  397 (399)
T 2oga_A          322 ELRSHLDARGIDTLTHYP-VP--VHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD  397 (399)
T ss_dssp             HHHHHHHHTTBCCBCSCS-SC--GGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHCCCceecCCC-Cc--cccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            676666  6888876431 11  0011133344432111       136899999999999999999999999887543

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.96  E-value=1.1e-27  Score=243.55  Aligned_cols=344  Identities=13%  Similarity=0.089  Sum_probs=238.4

Q ss_pred             CcEEecCCCCCCCCHHHH-HHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC----------cEEEeC
Q 040741           57 RPLYLDMQATTPVDPRVL-DAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK----------EIIFTS  125 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~-~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~----------~i~~t~  125 (457)
                      ++.|+++-.++...+.++ +.+...+..   +.  ..+..+....+...++.+++++++|.+.+          ..+||+
T Consensus        78 ~p~~~~~~~~~~~~~~~~~~~~~~~~n~---~~--~~~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~  152 (481)
T 4e1o_A           78 SPHMHAYYPALTSWPSLLGDMLADAINC---LG--FTWASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQS  152 (481)
T ss_dssp             STTBCSSSCCCCCHHHHHHHHHHHHHCC---CC--SSTTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEES
T ss_pred             CCCeeEeCCCCCCHHHHHHHHHHHHhCc---cc--CCcCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeC
Confidence            455777654444444444 333334321   21  23333445556777788899999998643          589999


Q ss_pred             ChHHHHHHHHHHhhhhhc---------------CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHH
Q 040741          126 GATESNNVSIKGVMHFYK---------------DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELR  190 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~---------------~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le  190 (457)
                      |||+|+..++.+.+....               .+++.|+++..+|.++.++++..   |.+++.++++.++.+|+++|+
T Consensus       153 ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~---g~~~~~v~~~~~~~~d~~~Le  229 (481)
T 4e1o_A          153 TVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLIS---LVKMKFLPVDDNFSLRGEALQ  229 (481)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhC---CCceEEEEcCCCCcCCHHHHH
Confidence            999999999998764321               15678999999999999998876   999999999988999999999


Q ss_pred             HhcCCC------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-C--CCC---cccEEEecccc
Q 040741          191 AAIRPD------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-V--EKW---NVSLMSLSGHK  258 (457)
Q Consensus       191 ~~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~--~~~---~~Di~~~s~~K  258 (457)
                      ++|+++      +.+|++++++|++|.+.|+++|+++|++||+++|+|+|++.+....+ .  ...   .+|++++++||
T Consensus       230 ~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK  309 (481)
T 4e1o_A          230 KAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSK  309 (481)
T ss_dssp             HHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHH
T ss_pred             HHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHH
Confidence            999754      67889999999999999999999999999999999999987644221 1  111   35999999999


Q ss_pred             -ccCCCCceEEEEecCCC-cc-c---cccccCCccc-------cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHH
Q 040741          259 -IYGPKGVGALYMRRRPR-IR-V---EPLINGGGQE-------RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITA  324 (457)
Q Consensus       259 -~~g~~G~G~l~~~~~~~-~~-~---~~~~~~~~~~-------~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~  324 (457)
                       +++|.|+|+++++++.. .+ +   ..++......       .....+. . ....++..++..+ .++++++.++..+
T Consensus       310 ~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~~~~~~~~~~~~~r-~-~~~l~~~~al~~~g~~g~~~~~~~~~~  387 (481)
T 4e1o_A          310 WMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANSGVATDFMHWQIPLSR-R-FRSVKLWFVIRSFGVKNLQAHVRHGTE  387 (481)
T ss_dssp             HSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTTTTSCCGGGGSSSSCC-C-CTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCceEEEEEeCHHHHHHHhcCCchhccCcccCCCCCcccccccCCC-C-ccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence             56688999999987522 11 1   1111111000       0001111 1 1233344455443 3468999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc--chHHHhcc--cCe-EecccCccCCCCCChhHHHHHcCCCc
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE--GESLLMGL--KEV-AVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l--~~i-~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      +++++.+.|++ ++++.+..++.   .+++.|.+++.+  ..++...|  +|+ .+.++.                    
T Consensus       388 ~a~~l~~~L~~-~~g~~~~~~~~---~~~v~f~~~~~~~~~~~l~~~L~~~g~~~~~~~~--------------------  443 (481)
T 4e1o_A          388 MAKYFESLVRN-DPSFEIPAKRH---LGLVVFRLKGPNSLTENVLKEIAKAGRLFLIPAT--------------------  443 (481)
T ss_dssp             HHHHHHHHHHT-CTTEECCSCCC---SSEEEEEESSCHHHHHHHHHHHHHHCSSBCEEEE--------------------
T ss_pred             HHHHHHHHHhc-CCCeEEecCCc---eeEEEEEeCCchHHHHHHHHHHHhCCeEEEEeeE--------------------
Confidence            99999999999 89999976542   456667765422  23455555  342 222111                    


Q ss_pred             cCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       400 ~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ..+...+||++.. .++++||++++++|+++++++-
T Consensus       444 ~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~~l~  479 (481)
T 4e1o_A          444 IQDKLIIRFTVTSQFTTRDDILRDWNLIRDAATLIL  479 (481)
T ss_dssp             ETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            1123689999775 4589999999999999988753

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.96  E-value=4.3e-28  Score=240.30  Aligned_cols=321  Identities=16%  Similarity=0.180  Sum_probs=231.2

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.++.      ..+|++.+++.+.+...... ..      ....+...++++++++++|  +++++|++|||+
T Consensus        34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~~------~~~~~~~~~l~~~la~~~g--~~~v~~~~~gt~  104 (392)
T 3ruy_A           34 EGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT-SR------AFHSDQLGPWYEKVAKLTN--KEMVLPMNTGAE  104 (392)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCC-CT------TSEETTHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred             CCCEEEEcCCChhhhccCCCCHHHHHHHHHHHHhcccc-cc------ccCCHHHHHHHHHHHHhcC--CCEEEEeCcHHH
Confidence            445688887643      25899999999988653211 11      0112567889999999999  457999999999


Q ss_pred             HHHHHHHHhhhhh------cCCCCEEEEcCCCCcchHHHHHHHHhc-C---------cEEEEEeCCCCCCCCHHHHHHhc
Q 040741          130 SNNVSIKGVMHFY------KDKKRHVITTQTEHKCVLDSCRHLQQE-G---------FEITYLPVGADGIVNLDELRAAI  193 (457)
Q Consensus       130 a~~~al~~~~~~~------~~~g~~vi~~~~~h~~~~~~~~~~~~~-G---------~~v~~v~~~~~~~~d~~~le~~i  193 (457)
                      |++++++.+....      ...+++|++..+.|.+....+..+... +         ..+..++.+     |++++++++
T Consensus       105 a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l  179 (392)
T 3ruy_A          105 AVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAI  179 (392)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHC
T ss_pred             HHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHh
Confidence            9999999776320      012679999888887766555443110 1         124444433     899999999


Q ss_pred             CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccCC--
Q 040741          194 RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYGP--  262 (457)
Q Consensus       194 ~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g~--  262 (457)
                      ++++++|++++++||+|.+.|    +++|.++|++||+++|+|++|+ ++..    ..+.....+|++++|  |.+++  
T Consensus       180 ~~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~S--K~l~gG~  257 (392)
T 3ruy_A          180 TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILG--KALGGGV  257 (392)
T ss_dssp             CTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTT
T ss_pred             ccCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhccCCCCCEEEEc--hhhhCCh
Confidence            999999999999999999998    9999999999999999999995 3321    122222346877654  95443  


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC--CCe
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL--DGV  340 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~  340 (457)
                      ..+|+++++++..+++.+...+..       .+.++..+.++.++++....  ++..++.+++++++.+.|++ +  +.+
T Consensus       258 ~~~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~~~~  327 (392)
T 3ruy_A          258 FPISCAAANRDILGVFEPGSHGST-------FGGNPLACAVSIAALEVLEE--EKLTERSLQLGEKLVGQLKE-IDNPMI  327 (392)
T ss_dssp             SCCEEEEECHHHHTTCCTTSSCCS-------STTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-CCCTTE
T ss_pred             hhhEEEEECHHHHhhhccCCcCCC-------CCCCHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            348999998876666655443222       26677778878788877654  77888999999999999988 5  334


Q ss_pred             EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .....    .+.++.+.++. +..++...|  +||.+.+|.                       .+++||+++..++++|
T Consensus       328 ~~~~~----~g~~~~~~~~~-~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~  379 (392)
T 3ruy_A          328 TEVRG----KGLFIGIELNE-PARPYCEQLKAAGLLCKETH-----------------------ENVIRIAPPLVISEED  379 (392)
T ss_dssp             EEEEE----ETTEEEEEESS-CSHHHHHHHHTTTEECCCBT-----------------------TTEEEECCCTTCCHHH
T ss_pred             eEEEe----eeeEEEEEEcc-hHHHHHHHHHHCCcEEecCC-----------------------CCEEEEECCCCCCHHH
Confidence            33221    24555566654 566776666  688887653                       2799999999999999


Q ss_pred             HHHHHHHHHHHH
Q 040741          419 VDRAIELTVKQV  430 (457)
Q Consensus       419 id~~~~~l~~~~  430 (457)
                      +++++++|++++
T Consensus       380 i~~~~~~l~~~l  391 (392)
T 3ruy_A          380 LEWAFQKIKAVL  391 (392)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999999875

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.96  E-value=2.2e-28  Score=238.63  Aligned_cols=314  Identities=15%  Similarity=0.106  Sum_probs=230.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ...+.|..+.+. +.++++.+++.+.+....++|..           ...++++++++++|++++++++|+|+|+|++++
T Consensus        15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~   83 (350)
T 3fkd_A           15 SEIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEP-----------DAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQI   83 (350)
T ss_dssp             -CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHH
T ss_pred             ccEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCC-----------cHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHH
Confidence            566777666544 67899999999988554444432           125799999999999888999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      ++++.      |++|+++.+.|.++...++..   |++++.++. +.++.+++        +++++|++++++||+|.+.
T Consensus        84 ~~~l~------gd~Vi~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~--------~~~~~v~i~~p~nptG~~~  146 (350)
T 3fkd_A           84 AQAFR------GSRSLIAIPSFAEYEDACRMY---EHEVCFYPSNEDIGEADF--------SNMDFCWLCNPNNPDGRLL  146 (350)
T ss_dssp             HHHTT------TCEEEEEESCCHHHHHHHHHT---TCEEEEEETTSCGGGSCC--------TTCSEEEEESSCTTTCCCC
T ss_pred             HHHHC------CCEEEEeCCCcHHHHHHHHHc---CCeEEEEecCCccccCcc--------CCCCEEEEeCCCCCcCCCC
Confidence            88765      899999999999988776665   999999998 65344444        6789999999999999999


Q ss_pred             ChHHHHHHHHhcC-CcEEEehhhhcCCCc-----ccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCC
Q 040741          214 PMEEIGQICKEFK-IPFHTDAAQALGKIP-----VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGG  285 (457)
Q Consensus       214 ~l~~i~~l~~~~~-v~li~D~a~~~g~~~-----~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~  285 (457)
                      |++++.++++.++ .++|+|++|+.....     ......+.++++.|++|.+|.+|  +|+++++++..+++.....  
T Consensus       147 ~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~~~~~~~~~~~~~~~--  224 (350)
T 3fkd_A          147 QRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIVANKDFMKRVAAFST--  224 (350)
T ss_dssp             CHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEECCHHHHHHHHTTCC--
T ss_pred             CHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEEeCHHHHHHHHHhCC--
Confidence            9999999998875 799999999743221     12233456689999999777443  8999997765555544332  


Q ss_pred             ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          286 GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       286 ~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                             ..+++.....++..+++......++.. +..++++++.+.|++ +|++.+..+.    .+++.+.++..+..+
T Consensus       225 -------~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~L~~-~~~~~~~~~~----~~~~~~~~~~~~~~~  291 (350)
T 3fkd_A          225 -------PWAVNALAIEAAKFILIHPAQFTLPIR-KWQRNTVDFITALNR-LDGVEVHPSG----TTFFLLRLKKGTAAE  291 (350)
T ss_dssp             -------TTCSCHHHHHHHHHHHHCTTTTCCCHH-HHHHHHHHHHHHHHH-STTEEECCCS----SSEEEEEESSSCHHH
T ss_pred             -------CCCCCHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHhc-CCCcEECCCC----CcEEEEECCCCCHHH
Confidence                   225666666666555553221233333 344889999999998 7898886432    445556666445666


Q ss_pred             HHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       366 ~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +...|   +||.+.+|..|..                 ...++|||+++   +.+++++++++|++..++
T Consensus       292 l~~~L~~~~gi~v~~g~~f~~-----------------~~~~~iRis~~---~~~~~~~l~~al~~~~~~  341 (350)
T 3fkd_A          292 LKKYMLEEYNMLIRDASNFRG-----------------LDESYVRITTQ---RPAQNQLFIKALETFLEK  341 (350)
T ss_dssp             HHHHHHHTTCEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCEEEEeCccCCC-----------------CCCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence            76665   5899999887642                 12389999987   689999999999887753

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.96  E-value=3.6e-30  Score=253.11  Aligned_cols=339  Identities=15%  Similarity=0.145  Sum_probs=230.3

Q ss_pred             EecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      |+|++.+. ++++++.+++.+.+.+.+-.           ..+...++++.+++++|.+  ++++++|||+|++++++++
T Consensus         4 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----------~~~~~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~   70 (367)
T 3nyt_A            4 FIDLKNQQARIKDKIDAGIQRVLRHGQYI-----------LGPEVTELEDRLADFVGAK--YCISCANGTDALQIVQMAL   70 (367)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHCCCS-----------SCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHT
T ss_pred             cccccccccccCHHHHHHHHHHHhcCCcc-----------CChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHh
Confidence            45554444 56788999998887653111           1156889999999999986  5999999999999999998


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      ..   ++|++|+++.++|.++..+++..   |+++++++++.+ +.+|++++++++++++++|+   ++|++|...++++
T Consensus        71 ~~---~~gd~Vi~~~~~~~~~~~~~~~~---G~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~v~---~~~~~G~~~~~~~  141 (367)
T 3nyt_A           71 GV---GPGDEVITPGFTYVATAETVALL---GAKPVYVDIDPRTYNLDPQLLEAAITPRTKAII---PVSLYGQCADFDA  141 (367)
T ss_dssp             TC---CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGTGGGCCTTEEEEC---CBCGGGCCCCHHH
T ss_pred             CC---CCcCEEEECCCccHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHhcCcCCcEEE---eeCCccChhhHHH
Confidence            32   89999999999999999887766   999999999855 78999999999999998887   5668999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcc--cEEEecc--ccccCCCC-ceEEEEec-CCCccccccccCCcccc--
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNV--SLMSLSG--HKIYGPKG-VGALYMRR-RPRIRVEPLINGGGQER--  289 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~--Di~~~s~--~K~~g~~G-~G~l~~~~-~~~~~~~~~~~~~~~~~--  289 (457)
                      |.++|++||+++|+|++|+.|.. .+....+.  |++++|+  +|.+|+.| +|+++.++ +..+++......+....  
T Consensus       142 i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~  220 (367)
T 3nyt_A          142 INAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLSTVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYH  220 (367)
T ss_dssp             HHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSSSEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred             HHHHHHHcCCEEEEECccccCCe-ECCeeccCCCCEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCce
Confidence            99999999999999999998765 22222222  8999996  89887743 57777754 34344444333222111  


Q ss_pred             ----ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchH
Q 040741          290 ----GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGES  365 (457)
Q Consensus       290 ----~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (457)
                          ++. ...+....+.....+    +.+++..++.+++++++.+.|.+ + ++.+...+.........+.+...+.+.
T Consensus       221 ~~~~g~~-~~~~~~~aa~~~~~l----~~~~~~~~~~~~~~~~~~~~L~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (367)
T 3nyt_A          221 HIRVGVN-SRLDTLQAAILLPKL----EIFEEEIALRQKVAAEYDLSLKQ-V-GIGTPFIEVNNISVYAQYTVRMDNRES  293 (367)
T ss_dssp             ECSCCCB-CCCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCCCTTEECCCSSEEEECSSHHH
T ss_pred             eeccCcC-CCccHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcc-C-CeeccCCCCCCceeeEEEEEEeCCHHH
Confidence                111 122222222222222    34567778888899999999998 5 454433322211222222333235667


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhH--HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSY--VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~--~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      +...|  +||.++.+..+. ....|.+  ....++..+....+.||++++..+|++||+++++.+++.
T Consensus       294 l~~~L~~~GI~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          294 VQASLKAAGVPTAVHYPIP-LNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             HHHHHHHHTCCCBCSCSSC-GGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             HHHHHHHCCCceeccCCCc-cccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence            77777  588777664211 1111111  001111222334589999999999999999999998753

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.96  E-value=1.4e-29  Score=251.06  Aligned_cols=343  Identities=15%  Similarity=0.115  Sum_probs=232.1

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      +.+.|..+.+ .+++++.+++.+.+...+-.          ...+...++++.+++++|.+  ++++++|||+|++++++
T Consensus        23 ~~~~l~~~~p-~~~~~~~~a~~~~~~~~~~~----------~~~~~~~~l~~~la~~~~~~--~~i~~~~gt~al~~~l~   89 (391)
T 3dr4_A           23 DLPRISVAAP-RLDGNERDYVLECMDTTWIS----------SVGRFIVEFEKAFADYCGVK--HAIACNNGTTALHLALV   89 (391)
T ss_dssp             -----CCCCC-CCCSSHHHHHHHHHHHTCCS----------SCSHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHH
T ss_pred             CCceeccCCC-CCCHHHHHHHHHHHHcCCcc----------CCChHHHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHH
Confidence            4455655444 56788999999887653211          01257889999999999986  59999999999999999


Q ss_pred             Hh-hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          137 GV-MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       137 ~~-~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ++ .    ++|++|+++.++|+++..+++..   |++++.++++ .++.+|++++++++++++++|++   +|++|.+.|
T Consensus        90 ~~~~----~~gd~vl~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~~---~n~tG~~~~  159 (391)
T 3dr4_A           90 AMGI----GPGDEVIVPSLTYIASANSVTYC---GATPVLVDNDPRTFNLDAAKLEALITPRTKAIMP---VHLYGQICD  159 (391)
T ss_dssp             HHTC----CTTCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCGGGSGGGCCTTEEEECC---BCGGGCCCC
T ss_pred             HcCC----CCcCEEEECCCchHHHHHHHHHC---CCEEEEEecCccccCcCHHHHHHhcCCCceEEEE---ECCCCChhh
Confidence            98 5    88999999999999998887765   9999999998 56789999999999999988874   568999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccC--CCCcccEEEec--cccccCCCCceEEEEecC-CCccccccccCCccc-
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDV--EKWNVSLMSLS--GHKIYGPKGVGALYMRRR-PRIRVEPLINGGGQE-  288 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~--~~~~~Di~~~s--~~K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~-  288 (457)
                      +++|.++|++||+++|+|++|+.|....+.  ... .|+.++|  .+|.+++..+|+++.+++ ..+++.....++... 
T Consensus       160 ~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~-~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~  238 (391)
T 3dr4_A          160 MDPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL-GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN  238 (391)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTT
T ss_pred             HHHHHHHHHHcCCEEEEECcccccceECCeeeccc-CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999987654332  222 2555555  569666443577777654 333444333322110 


Q ss_pred             cccc---cC-CCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC--CCC--cccceEEEEEc
Q 040741          289 RGIR---SG-TLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS--MER--RYIGNLNLSFA  359 (457)
Q Consensus       289 ~~~~---~~-t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--~~~--~~~~~~~~~~~  359 (457)
                      ..+.   .+ ...   ...+.+++... ...+++..++.+++++++.+.|.+ + ++.+...  +..  .....+.+.++
T Consensus       239 ~~~~~~~~g~~~~---~~~l~aa~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~~~~~~~~~~~~~i~~~  313 (391)
T 3dr4_A          239 RRYWFPIVGFNYR---MTNIQAAIGLAQLERVDEHLAARERVVGWYEQKLAR-L-GNRVTKPHVALTGRHVFWMYTVRLG  313 (391)
T ss_dssp             STTCCSSCCCBCB---CCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHGG-G-TTSEECCCCCTTSCCCCSSEEEEEC
T ss_pred             CcccccccccccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-CccccCcCCCCCCcceeEEEEEEEC
Confidence            0000   00 011   11222233222 235788888999999999999999 6 7777654  222  22223445554


Q ss_pred             ---cccchHHHhcc--cCeEecccC---ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          360 ---YVEGESLLMGL--KEVAVSSGS---ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       360 ---~~~~~~~~~~l--~~i~~~~g~---~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                         +.+..++...|  +||.+.+|.   .|.+....  +....++.......+.||++++..+|+||||+++++|++++
T Consensus       314 ~~~~~~~~~l~~~L~~~GI~v~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          314 EGLSTTRDQVIKDLDALGIESRPVFHPMHIMPPYAH--LATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             SSCSSCHHHHHHHHHHTTCCCEECCCCGGGSGGGGG--GCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             CccchhHHHHHHHHHHCCCceeecCCccccChhhhh--cCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence               24466777777  699888775   33321100  00000111112234799999999999999999999998754

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.96  E-value=4.8e-29  Score=250.21  Aligned_cols=339  Identities=14%  Similarity=0.110  Sum_probs=233.7

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhcc-CCC-CCCccchhhhHHHHHHHHHHHHHHHhC--------CCCCcEEEeC
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRY-GNP-HSRTHLFGWESEVAVETARSQIADLIG--------ASPKEIIFTS  125 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~-~~p-~~~~~~~~~~~~~~~~~~~~~la~~~g--------~~~~~i~~t~  125 (457)
                      .+.+.|+.+.+...++.+.+++.+...... .+. ........|.......++++.++++++        ++++++++++
T Consensus        36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~  115 (428)
T 1iay_A           36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAG  115 (428)
T ss_dssp             TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEE
T ss_pred             CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEcc
Confidence            456778766666556778888775421000 000 000000011111124567777777776        6778899999


Q ss_pred             ChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC------Cc
Q 040741          126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP------DT  197 (457)
Q Consensus       126 g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~------~t  197 (457)
                      |+|+++.++++++.    ++|+.|++..+.|.++...+.  ...|.+++.++.+.  ++.+|++++++++++      ++
T Consensus       116 G~~~ai~~~~~~~~----~~gd~Vl~~~p~y~~~~~~~~--~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~  189 (428)
T 1iay_A          116 GATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLR--WRTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSNIKV  189 (428)
T ss_dssp             HHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTT--TTTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCE
T ss_pred             ChHHHHHHHHHHhC----CCCCeEEEccCCCcchHHHHH--HhcCCEEEEeecCCccCCcCCHHHHHHHHHHHHhcCCce
Confidence            99999999999988    899999999999998875432  23499999998863  346899999998863      68


Q ss_pred             eEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---c-ccC---CC------Cccc--EEEeccccc
Q 040741          198 GLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---P-VDV---EK------WNVS--LMSLSGHKI  259 (457)
Q Consensus       198 ~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~-~~~---~~------~~~D--i~~~s~~K~  259 (457)
                      ++|++++++||+|.+.|   +++|.++|++||+++|+|++|+.+..   . .++   ..      ++.|  +++.|+||.
T Consensus       190 ~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~  269 (428)
T 1iay_A          190 KGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKD  269 (428)
T ss_dssp             EEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTT
T ss_pred             EEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhh
Confidence            99999999999999999   99999999999999999999985321   1 111   11      1256  889999998


Q ss_pred             cCCCC--ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHH
Q 040741          260 YGPKG--VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA---KKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       260 ~g~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~---~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      +|.+|  +|+++++ ++..+++....         ...+.+.....++..+++..   .+.+++..++++++++++.+.|
T Consensus       270 ~g~~Glr~G~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L  340 (428)
T 1iay_A          270 MGLPGFRVGIIYSFNDDVVNCARKMS---------SFGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGL  340 (428)
T ss_dssp             SSCGGGCEEEEEESCHHHHHHHHHHH---------TTSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCceEEEEEeCCHHHHHHHHHHH---------hcccCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88666  6999984 44444443221         11245556666665566432   2346788888999999999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc--c-CeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL--K-EVAVSSGSACTSASLEPSYVLRALGVDEDMAH  403 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l--~-~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~  403 (457)
                      .+ + ++.+..+.   .+.++.+.++..       ....+...|  + ||.+.+|..|...                 ..
T Consensus       341 ~~-~-g~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~-----------------~~  398 (428)
T 1iay_A          341 EV-V-GIKCLKNN---AGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQ-----------------EP  398 (428)
T ss_dssp             HH-T-TCCBCCCS---SSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS-----------------SS
T ss_pred             Hh-c-CCcccCCC---eeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCC-----------------CC
Confidence            98 5 66554321   244455565432       223555555  4 9999988755321                 13


Q ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          404 TSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +++||+++ .++++++++++++|++++++
T Consensus       399 ~~iRis~~-~~~~e~i~~~~~~l~~~l~~  426 (428)
T 1iay_A          399 GWFRVCFA-NMDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SEEEEECS-SSCHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEEe-cCCHHHHHHHHHHHHHHHhc
Confidence            79999998 57899999999999998764

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.96  E-value=1.4e-28  Score=248.30  Aligned_cols=340  Identities=13%  Similarity=0.171  Sum_probs=222.9

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHH-HHHHHHHHHHhCCCCCc---EEEeCChHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAV-ETARSQIADLIGASPKE---IIFTSGATESNNV  133 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~-~~~~~~la~~~g~~~~~---i~~t~g~T~a~~~  133 (457)
                      ..-.+++++++++|+++|...+.+.+  |+|.++ +..|....+.+ ..+++++++++|+++++   .++++|||+|+.+
T Consensus        57 i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r-~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~An~~  135 (490)
T 2a7v_A           57 LELIASENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLA  135 (490)
T ss_dssp             EECCTTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHH
T ss_pred             ceEECCCCCCCHHHHHHHHHHHcCCCccCCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHHHHHH
Confidence            34456888999999999999998877  677763 32333332233 35669999999998753   4667789999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-----HHHhcCc--EEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEec
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-----HLQQEGF--EITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMA  204 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-----~~~~~G~--~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~  204 (457)
                      ++.+++    ++||+|+++.++|.++.....     .+...|.  +++.++++ .++.+|+++++++++ .++++|+++.
T Consensus       136 al~al~----~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~~~~klIi~~~  211 (490)
T 2a7v_A          136 VYTALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT  211 (490)
T ss_dssp             HHHHHC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECC
T ss_pred             HHHHHc----CCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhhcCCcEEEEcC
Confidence            999998    899999999998876432110     1112244  34455555 568999999999986 4688888876


Q ss_pred             cccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccc-ccCCCCceEEEEecCCC---
Q 040741          205 VNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPR---  275 (457)
Q Consensus       205 ~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~---  275 (457)
                      ++|  |...|+++|.++|++||+++|+|+||+.|..     +..+.  ++|++++|+|| +.||.| |+++++++.+   
T Consensus       212 s~~--~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~--~aDiv~~S~hK~l~Gp~G-G~i~~~~~~~~~~  286 (490)
T 2a7v_A          212 SAY--ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFK--HADIVTTTTHKTLRGARS-GLIFYRKGVKAVD  286 (490)
T ss_dssp             SSC--CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGG--TCSEEEEESSGGGCSCSC-EEEEEECSEEEEE
T ss_pred             CCC--CCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCC--CCCEEEECCcccCccccc-hheeeccchhccc
Confidence            665  4678999999999999999999999975432     22222  58999999999 557886 9999987521   


Q ss_pred             ------------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          276 ------------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       276 ------------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                                  .+++.....+      ..|+++...++++..|+..+.. ++++..++..++++++.+.|.+  .|+.+
T Consensus       287 ~~~~~~~~~~l~~~i~~~~~~g------~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~--~G~~v  358 (490)
T 2a7v_A          287 PKTGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSL  358 (490)
T ss_dssp             TTTEEEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEE
T ss_pred             ccccchhhHHHHHHHHHHhccc------CCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH--cCcEE
Confidence                        1122111111      2346778888888888877753 5788889999999999999999  48888


Q ss_pred             eCCCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC----CCC
Q 040741          343 NGSMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG----RFT  414 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~----~~~  414 (457)
                      ......  ...+.+.+.  +.++..+...|  .||.+..+..+..              ......+.|||+..    +..
T Consensus       359 ~~~~t~--t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d--------------~~p~~~~~iRig~~a~t~~g~  422 (490)
T 2a7v_A          359 VSGGTD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQF  422 (490)
T ss_dssp             GGGSCS--SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTC
T ss_pred             ecCCCC--CeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCC--------------CCCCCCCceEecccccccCCC
Confidence            642211  344455554  34556666666  5888875532210              01223478999763    356


Q ss_pred             CHHHHHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       415 t~edid~~~~~l~~~~~~~  433 (457)
                      +++|++++++.|.++++..
T Consensus       423 ~~~d~~~~~~~i~~~l~~~  441 (490)
T 2a7v_A          423 REDDFRRVVDFIDEGVNIG  441 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhh
Confidence            8999999999999998754

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.96  E-value=8.6e-28  Score=238.09  Aligned_cols=335  Identities=16%  Similarity=0.117  Sum_probs=233.9

Q ss_pred             CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCC
Q 040741           67 TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDK  145 (457)
Q Consensus        67 ~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~  145 (457)
                      ..+++++++++.+.+.+.+-.         .  .+...++++.+++++|.+  ++++++|||+|++++++++ .    ++
T Consensus        16 p~~~~~~~~a~~~~~~~~~~~---------~--~~~~~~l~~~la~~~~~~--~~~~~~~gt~al~~~~~~~~~----~~   78 (393)
T 1mdo_A           16 PAMGAEELAAVKTVLDSGWIT---------T--GPKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI----GE   78 (393)
T ss_dssp             CCCCHHHHHHHHHHHHHTCCS---------S--SHHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC----CT
T ss_pred             CCCCHHHHHHHHHHHhcCCcC---------C--ChHHHHHHHHHHHHhCCC--cEEEecChHHHHHHHHHHcCC----CC
Confidence            346789999999988653111         1  157889999999999975  5999999999999999998 6    78


Q ss_pred             CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh
Q 040741          146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE  224 (457)
Q Consensus       146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~  224 (457)
                      |++|+++.++|+++..+++..   |++++.++.+.+ +.+|++++++++++++++|++++   ++|.+.++++|.++|++
T Consensus        79 gd~Vl~~~~~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~v~~~~---~~G~~~~~~~i~~l~~~  152 (393)
T 1mdo_A           79 GDEVITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVH---YAGAPADLDAIYALGER  152 (393)
T ss_dssp             TCEEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBC---GGGCCCCHHHHHHHHHH
T ss_pred             CCEEEeCCCccHhHHHHHHHC---CCEEEEEeccCCcCCCCHHHHHHhcCCCceEEEEeC---CCCCcCCHHHHHHHHHH
Confidence            999999999999998777655   999999998854 67999999999998899888764   69999999999999999


Q ss_pred             cCCcEEEehhhhcCCCcccCCCCc-ccEEEeccc--cccCCCCceEEEEe-cCCCccccccccCCccc-----------c
Q 040741          225 FKIPFHTDAAQALGKIPVDVEKWN-VSLMSLSGH--KIYGPKGVGALYMR-RRPRIRVEPLINGGGQE-----------R  289 (457)
Q Consensus       225 ~~v~li~D~a~~~g~~~~~~~~~~-~Di~~~s~~--K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~-----------~  289 (457)
                      +|+++|+|++|+.|.... ....+ .|++++|+|  |++++..+|+++.+ ++..+++.+....+...           .
T Consensus       153 ~~~~li~D~a~~~g~~~~-~~~~~~~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  231 (393)
T 1mdo_A          153 YGIPVIEDAAHATGTSYK-GRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAP  231 (393)
T ss_dssp             HTCCBCEECTTCTTCEET-TEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------
T ss_pred             cCCeEEEECccccCCeEC-CeecCCCCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchhhhcccccc
Confidence            999999999999775432 22234 899999999  86654446888886 45555554433222110           0


Q ss_pred             cc---ccCC-CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--C-cccceEEEEEc---
Q 040741          290 GI---RSGT-LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--R-RYIGNLNLSFA---  359 (457)
Q Consensus       290 ~~---~~~t-~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~-~~~~~~~~~~~---  359 (457)
                      .+   ..|+ .....+.+. .++. ..+.+++..++.+++++++.+.|.+ ++ +++...+.  . ....++.+.++   
T Consensus       232 ~~~~~~~g~~~~~~~~~~a-~~~~-~l~~~~~~~~~~~~~~~~l~~~L~~-~~-~~~~~~~~~~~~~~~~~~~v~~~~~~  307 (393)
T 1mdo_A          232 QAEVLAPGYKYNLPDLNAA-IALA-QLQKLDALNARRAAIAAQYHQAMAD-LP-FQPLSLPSWEHIHAWHLFIIRVDEAR  307 (393)
T ss_dssp             CCEESSCCCBCCCCHHHHH-HHHH-HHHTHHHHHHHHHHHHHHHHHHHHT-SS-CEECCCCSSCEECCCSCEEEECCHHH
T ss_pred             cccccccCccCCCCHHHHH-HHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-CC-cccccCCCCCCCceeEEEEEEecccc
Confidence            01   1121 111112111 1111 1234677788888899999999998 66 77754321  1 12334556665   


Q ss_pred             -cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHc---CCC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          360 -YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL---GVD--EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       360 -~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~---g~~--~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                       +.+..++...|  +||.+.+|..|...  .+.+.. .+   .+.  .....+.|||+++..+|++|+++++++|+++++
T Consensus       308 ~~~~~~~l~~~l~~~gi~v~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~  384 (393)
T 1mdo_A          308 CGITRDALMASLKTKGIGTGLHFRAAHT--QKYYRE-RFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAG  384 (393)
T ss_dssp             HSSCHHHHHHHHHHTTBCCBCCCCCGGG--SHHHHH-HSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             cccCHHHHHHHHHhCCCCcccccCcccc--Chhhhc-cCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence             34566777666  69998888766321  111111 00   000  001236899999999999999999999998876


Q ss_pred             H
Q 040741          432 K  432 (457)
Q Consensus       432 ~  432 (457)
                      .
T Consensus       385 ~  385 (393)
T 1mdo_A          385 Q  385 (393)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.96  E-value=1.8e-29  Score=248.74  Aligned_cols=336  Identities=14%  Similarity=0.117  Sum_probs=225.5

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHH-HHHhCCCCCcEEEeCChHHHHHHHHHHh-hhhhcCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQI-ADLIGASPKEIIFTSGATESNNVSIKGV-MHFYKDK  145 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l-a~~~g~~~~~i~~t~g~T~a~~~al~~~-~~~~~~~  145 (457)
                      +.++++++++.+.+.+.+-.+      ++    +...++++.+ ++++|. .+++++++|||+|+++++.++ .    ++
T Consensus        13 ~~~~~i~~a~~~~~~~~~~~~------~~----~~~~~l~~~~~a~~~g~-~~~~v~~~sgt~al~~al~~l~~----~~   77 (377)
T 3ju7_A           13 VPVIEYLDELKEIDASHIYTN------YG----PINQRFEQTIMSGFFQN-RGAVTTVANATLGLMAAIQLKKR----KK   77 (377)
T ss_dssp             CCGGGGHHHHHHHHHHTCCSS------SC----HHHHHHHHHHHHHTSTT-CSEEEEESCHHHHHHHHHHHHSC----TT
T ss_pred             CCcHHHHHHHHHHHHcCCccc------CC----HHHHHHHHHHHHHHhCC-CCeEEEeCCHHHHHHHHHHHcCC----CC
Confidence            556788899998887532110      11    4678999999 999993 346999999999999999987 5    89


Q ss_pred             CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhc-CCC--ceEEEEeccccccccccChHHHHHH
Q 040741          146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAI-RPD--TGLISVMAVNNEIGVIQPMEEIGQI  221 (457)
Q Consensus       146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i-~~~--t~li~i~~~~~~~G~~~~l~~i~~l  221 (457)
                      ||+||++.++|.++..++...   |+++++++++ .++.+|++++++++ +++  |++|+   ++|++|...|+++|.++
T Consensus        78 Gd~Vi~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~~l  151 (377)
T 3ju7_A           78 GKYALMPSFTFPATPLAAIWC---GLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYEEL  151 (377)
T ss_dssp             CCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHHHH
T ss_pred             cCEEEECCCCcHHHHHHHHHc---CCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHHHH
Confidence            999999999999998887665   9999999998 56789999999998 666  88887   44679999999999999


Q ss_pred             HHhcCCcEEEehhhhcCCCcccCCCC-----cccEEEeccccccCCCCceEEEEecC-CCccccccccCCc------ccc
Q 040741          222 CKEFKIPFHTDAAQALGKIPVDVEKW-----NVSLMSLSGHKIYGPKGVGALYMRRR-PRIRVEPLINGGG------QER  289 (457)
Q Consensus       222 ~~~~~v~li~D~a~~~g~~~~~~~~~-----~~Di~~~s~~K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~------~~~  289 (457)
                      |+ +|+++|+|++|++|.... ....     ++++++++.+|.+++...|+++.+++ +.++++.....+.      ...
T Consensus       152 a~-~~~~vi~D~a~a~g~~~~-~~~~g~~~~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~  229 (377)
T 3ju7_A          152 EK-KGVPVVVDAAPGFGLMNG-GMHYGQDFSGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMM  229 (377)
T ss_dssp             HH-TTCCBEEECTTCTTCEET-TEETTTTCSSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSS
T ss_pred             Hh-cCCEEEEECCCccCCeEC-CEeccCCCCcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeec
Confidence            99 999999999999886532 1111     34455555679776544577776643 3344444433221      112


Q ss_pred             ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE--EeCCC-CCcccceEEEEEcc-ccchH
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV--VNGSM-ERRYIGNLNLSFAY-VEGES  365 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~-~~~~~~~~~~~~~~-~~~~~  365 (457)
                      ++.++..+.....++ ..    .+.++...++.+++++++.+.|.+ ++++.  +.... ......++.+.++. .+.++
T Consensus       230 g~~~~~~~~~aa~~~-~~----l~~l~~~~~~~~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T 3ju7_A          230 GFNCKMSEYAAAIGI-AT----MKKWDDKLKERTRISEWYKQLLQS-NGLMKKGWQLQKTEAVIQQFMPILCPEEVRNKQ  303 (377)
T ss_dssp             CCBCCCCHHHHHHHH-HH----HHTHHHHHHHHHHHHHHHHHHHHH-TTTTTTTCBCCCCSCBCCSSEEEECCTTSCHHH
T ss_pred             cccCCCCHHHHHHHH-HH----HHHHHHHHHHHHHHHHHHHHHhcC-CCCccccccCCCCCcceEEEEEEEeCChhhHHH
Confidence            222222222222211 11    245678888889999999999988 66532  11111 11222233444442 23677


Q ss_pred             HHhcc--cCeEecccC--ccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGS--ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~--~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +...|  +||.++.+.  .|+.....+++....++..+....+.||++++..+|++|++++++.|++++..
T Consensus       304 l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~  374 (377)
T 3ju7_A          304 VIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVVS  374 (377)
T ss_dssp             HHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            77777  688887765  34322111111111222333445689999999999999999999999988765

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=99.96  E-value=2.3e-27  Score=233.58  Aligned_cols=318  Identities=18%  Similarity=0.227  Sum_probs=222.0

Q ss_pred             CCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.+..+      .++++.+++.+.+... +++.. .  |.   .....++++++++++|+ ++++++++|||+
T Consensus        26 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~--y~---~~~~~~l~~~la~~~g~-~~~v~~~~g~t~   97 (375)
T 2eh6_A           26 EGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL-LHVSN-L--YE---NPWQEELAHKLVKHFWT-EGKVFFANSGTE   97 (375)
T ss_dssp             TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC-SCCCT-T--BC---CHHHHHHHHHHHHTSSS-CEEEEEESSHHH
T ss_pred             CCCEEEEcCCcccccccCCCCHHHHHHHHHHHHhc-cccCc-c--cC---CHHHHHHHHHHHhhcCC-CCeEEEeCchHH
Confidence            4557888875432      7899999999998653 23222 1  11   13567899999999998 367999999999


Q ss_pred             HHHHHHHHhhhhh--cCCC-CEEEEcCCCCcchHHHHHHHHh-----cCcE-----EEEEeCCCCCCCCHHHHHHhcCCC
Q 040741          130 SNNVSIKGVMHFY--KDKK-RHVITTQTEHKCVLDSCRHLQQ-----EGFE-----ITYLPVGADGIVNLDELRAAIRPD  196 (457)
Q Consensus       130 a~~~al~~~~~~~--~~~g-~~vi~~~~~h~~~~~~~~~~~~-----~G~~-----v~~v~~~~~~~~d~~~le~~i~~~  196 (457)
                      |+.++++++..+.  .++| ++|++..+.|......+..+..     .|..     +..++.     .|+++++++++++
T Consensus        98 a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~~  172 (375)
T 2eh6_A           98 SVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDEE  172 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcCC
Confidence            9999998642111  1456 8999999887766555444310     1222     444443     4899999999999


Q ss_pred             ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCCCCc--ccEEEeccccccC-CCCce
Q 040741          197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVEKWN--VSLMSLSGHKIYG-PKGVG  266 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~~~~--~Di~~~s~~K~~g-~~G~G  266 (457)
                      +++|++++++|++|.+.|    +++|.++|++||+++|+|++|+ ++..+  +++...+  +|++++|  |.+| +.++|
T Consensus       173 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~S--K~~~~g~~~G  250 (375)
T 2eh6_A          173 TAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALA--KGLGGGVPIG  250 (375)
T ss_dssp             EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGTTSCCE
T ss_pred             eEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEc--ccccCCCCeE
Confidence            999999999999999988    9999999999999999999998 55432  2233334  7887555  9554 45699


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                      +++++++..+++.+...+.      ..++ +.....++.++++...    +..++.+++++++.+.|++ ++...+.+  
T Consensus       251 ~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~l~~~~----~~~~~~~~~~~~l~~~L~~-~~~~~~~~--  316 (375)
T 2eh6_A          251 AILAREEVAQSFTPGSHGS------TFGG-NPLACRAGTVVVDEVE----KLLPHVREVGNYFKEKLKE-LGKGKVKG--  316 (375)
T ss_dssp             EEEEEHHHHTTCCTTSCCC------SSTT-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-TTSSEEEE--
T ss_pred             EEEEcHHHHhhhcCCCCCC------CCCC-CHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HhcCCceE--
Confidence            9999987666655422211      1223 4444444445555433    6778888899999999988 65422222  


Q ss_pred             CCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          347 ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                         ...++.+.++. +..++...|  +||.+.++.                       .+.+||+++..++++|++++++
T Consensus       317 ---~g~~~~~~~~~-~~~~~~~~l~~~gi~~~~~~-----------------------~~~iRi~~~~~~~~~~i~~~~~  369 (375)
T 2eh6_A          317 ---RGLMLGLELER-ECKDYVLKALEKGLLINCTA-----------------------GKVLRFLPPLIIQKEHIDRAIS  369 (375)
T ss_dssp             ---ETTEEEEECSS-CCHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHHHHHHH
T ss_pred             ---EEEEEEEEEcC-cHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHH
Confidence               14455555543 345666655  688776541                       2799999998899999999999


Q ss_pred             HHHHH
Q 040741          425 LTVKQ  429 (457)
Q Consensus       425 ~l~~~  429 (457)
                      +|+++
T Consensus       370 ~l~~~  374 (375)
T 2eh6_A          370 VLREI  374 (375)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99875

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.96  E-value=1.2e-28  Score=246.89  Aligned_cols=339  Identities=13%  Similarity=0.114  Sum_probs=233.5

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHH--HHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAML--PFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~--~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ...+.|..+.+.    +.++++.+++.  +.+..  +     .....| .......++++.++++++++++++++|+|++
T Consensus        25 ~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~~--~-----~~~~~Yp~~~~g~~~lr~~ia~~~~~~~~~i~~t~G~~   97 (423)
T 3ez1_A           25 GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRMD--G-----LDLRNYPGGVAGLPSARALFAGYLDVKAENVLVWNNSS   97 (423)
T ss_dssp             TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEET--T-----EETTSSCSCTTCCHHHHHHHHHHTTSCGGGEEECSSCH
T ss_pred             CceEecCCCCCChHhCCCcHHHHHHHhhhHHhhc--c-----hhhhCCCCCCCChHHHHHHHHHHhCCChhhEEEeCCcH
Confidence            345666665555    35667777775  33321  0     001112 1123467899999999999988999999999


Q ss_pred             HHHH--HHHHHhhhhhcC--C---------CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc--
Q 040741          129 ESNN--VSIKGVMHFYKD--K---------KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI--  193 (457)
Q Consensus       129 ~a~~--~al~~~~~~~~~--~---------g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i--  193 (457)
                      ++++  ++++++.    .  +         +++|++..+.|..+...++..   |.+++.++.+.++ +|+++|++++  
T Consensus        98 ~al~~~~~~~~l~----~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~l~~~l~~  169 (423)
T 3ez1_A           98 LELQGLVLTFALL----HGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTL---GFELLTVDMQSDG-PDVDAVERLAGT  169 (423)
T ss_dssp             HHHHHHHHHHHHH----TCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHH---TCEEEEEEEETTE-ECHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHh----ccCCCccccccCCCCEEEEcCCCcHHHHHHHHHc---CCEEEeccCCCCC-CCHHHHHHHHhh
Confidence            9998  8888887    5  6         599999999999998887776   9999999988665 8999999999  


Q ss_pred             CCCceEEEE-eccccccccccChH---HHHHHH-HhcCCcEEEehhhhcCCC-------cccC-------CCCcccEEEe
Q 040741          194 RPDTGLISV-MAVNNEIGVIQPME---EIGQIC-KEFKIPFHTDAAQALGKI-------PVDV-------EKWNVSLMSL  254 (457)
Q Consensus       194 ~~~t~li~i-~~~~~~~G~~~~l~---~i~~l~-~~~~v~li~D~a~~~g~~-------~~~~-------~~~~~Di~~~  254 (457)
                      ++++++|++ ++++||+|.+.|.+   +|+++| ++||+++|+|++|+....       ..++       ...+.++++.
T Consensus       170 ~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  249 (423)
T 3ez1_A          170 DPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFA  249 (423)
T ss_dssp             CTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEE
T ss_pred             CCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEe
Confidence            678888865 58999999999966   788888 999999999999984211       1111       1335679999


Q ss_pred             ccccc-cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH----HHHhhHHHHHHHHHHHHHH
Q 040741          255 SGHKI-YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI----AKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       255 s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~----~~~~~~~~~~~~~~~~~~l  329 (457)
                      |++|. +++.++|+++++++..+++.......       ....+.....++..+++.    ....+.+..+.++++.+.+
T Consensus       250 S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l  322 (423)
T 3ez1_A          250 STSKITFAGAGLGFVASSEDNIRWLSKYLGAQ-------SIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAV  322 (423)
T ss_dssp             ESTTTSCSSSSCEEEEECHHHHHHHHHHHHHS-------CSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhhccCCcceEEEEeCHHHHHHHHHHHhhh-------ccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            99994 44446999999877655554433211       124455555555455543    1233555555555555555


Q ss_pred             HHHHhhc---CC-CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecc-cCccCCCCCChhHHHHHcCCCccCC
Q 040741          330 LNGIKEK---LD-GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS-GSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       330 ~~~l~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      .+.|.+.   ++ ++.+..+.   .+.++.+.++..+...+...+  +||.+.+ |..|...              ....
T Consensus       323 ~~~l~~~l~~~~~~~~~~~p~---~g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~g~~~~~~--------------~~~~  385 (423)
T 3ez1_A          323 DEVLRAELGEGGEYATWTLPK---GGYFISLDTAEPVADRVVKLAEAAGVSLTPAGATYPAG--------------QDPH  385 (423)
T ss_dssp             HHHHHHHHTTTTSSEEECCCS---BSSCEEEEESSSCHHHHHHHHHHTTEECCCTTTTSSTT--------------CCSS
T ss_pred             HHHHHHhcCcCCCceEEeCCC---ccEEEEEECCCCcHHHHHHHHHHCCcEEecCcccccCC--------------CCCC
Confidence            5555432   33 36665432   244566677644455666555  6999998 5544321              1123


Q ss_pred             CCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       403 ~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .++|||+++.. +++++++++++|+++++++.
T Consensus       386 ~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~~  416 (423)
T 3ez1_A          386 NRNLRLAPTRP-PVEEVRTAMQVVAACIRLAT  416 (423)
T ss_dssp             SCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            48999999766 89999999999999998765

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.96  E-value=7.5e-28  Score=239.77  Aligned_cols=306  Identities=12%  Similarity=0.099  Sum_probs=225.8

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~  171 (457)
                      +.|+....+...+++++++++.|.+  ++++++||++|+.++++++.    ++||+|+++.+.|.++...++. ++..|.
T Consensus        73 ~~y~r~~~p~~~~l~~~la~~~g~~--~~~~~~sG~~Ai~~al~~l~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~  146 (414)
T 3ndn_A           73 YVYSRYGNPTVSVFEERLRLIEGAP--AAFATASGMAAVFTSLGALL----GAGDRLVAARSLFGSCFVVCSEILPRWGV  146 (414)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHTTC----CTTCEEEEESCCCHHHHHHHHTHHHHTTC
T ss_pred             cCcCCCCChHHHHHHHHHHHHHCCC--cEEEECCHHHHHHHHHHHHh----CCCCEEEEcCCccchHHHHHHHHHHHcCc
Confidence            3444444578899999999999974  58999999999999999987    8999999999999998877654 355699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+..... ...++|+
T Consensus       147 ~~~~v~~~-----d~~~l~~ai~~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~~-~~~g~di  220 (414)
T 3ndn_A          147 QTVFVDGD-----DLSQWERALSVPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQG-FPLGVDV  220 (414)
T ss_dssp             EEEEECTT-----CHHHHHHHTSSCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCCC-GGGTCSE
T ss_pred             EEEEeCCC-----CHHHHHHhcCCCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCCc-hhcCCCe
Confidence            99999876     89999999999999999999999999999999999999999999999999986643222 2457899


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++.|++|++|+.|   +|+++++++.+. ++......       ..++.++...+.+..    ..+.+..+.++..++++
T Consensus       221 v~~S~sK~l~~~G~~~~G~vv~~~~~~~~~l~~~~~~-------~g~~~~~~~a~~~~~----~l~~l~~r~~~~~~~a~  289 (414)
T 3ndn_A          221 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMRH-------TGPAMSAFNAWVLLK----GLETLAIRVQHSNASAQ  289 (414)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHTTHHHHHHHH-------HCCCCCHHHHHHHHH----HGGGHHHHHHHHHHHHH
T ss_pred             EeccCCccccCCCCceEEEEEECHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence            9999999887765   799998876544 33322211       111333332222211    12345667778888999


Q ss_pred             HHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc------cchHHHhcc--cCeEecccCccCC--
Q 040741          328 RLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV------EGESLLMGL--KEVAVSSGSACTS--  383 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~------~~~~~~~~l--~~i~~~~g~~~~~--  383 (457)
                      ++.+.|++ .|.+..+..+.              ...++++.+.+++.      +...++..+  .++.++.|..++.  
T Consensus       290 ~l~~~L~~-~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~  368 (414)
T 3ndn_A          290 RIAEFLNG-HPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLIDISNNLGDAKSLVT  368 (414)
T ss_dssp             HHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSSEECSCCSCSSCEEE
T ss_pred             HHHHHHhc-CCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccceEcCCCCCCCceee
Confidence            99999998 78875432221              12467788888642      234566666  4677777876543  


Q ss_pred             ------CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          384 ------ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       384 ------~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                            ....+.....+.|+.+    +.||++++.    |+++.+++.|++++
T Consensus       369 ~p~~~~~~~~~~~~~~~~g~~~----~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          369 HPATTTHRAMGPEGRAAIGLGD----GVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             CGGGTTTCTTHHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             CccccccccCCHHHHHhcCCCC----CeEEEEeCc----CCHHHHHHHHHHhh
Confidence                  1223444566678775    899999996    67777777777765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=9.7e-29  Score=246.90  Aligned_cols=350  Identities=15%  Similarity=0.126  Sum_probs=222.6

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g~T~  129 (457)
                      .+.+.|..+.+.. .+.+.+++.+.+.+...++....+..+|.......++++.+++++      +++++++++|+|+|+
T Consensus        31 ~~~i~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~  109 (417)
T 3g7q_A           31 PGAIMLGGGNPAH-IPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQS  109 (417)
T ss_dssp             -CCEECSCCCCCC-CHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred             CCceEecCcCCCC-CChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHH
Confidence            4567777765554 233334444433322211110011112222234667888888877      567889999999999


Q ss_pred             HHHHHHHHhhhhhcCCCC-----EEEEc-CCCCcchHHHHHHHH---hcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceE
Q 040741          130 SNNVSIKGVMHFYKDKKR-----HVITT-QTEHKCVLDSCRHLQ---QEGFEITYLPVGA-DGIVNLDELRAAIRPDTGL  199 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~-----~vi~~-~~~h~~~~~~~~~~~---~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~l  199 (457)
                      |++++++++.    ++|+     +|+++ .++|..+...+....   ..+..+..++.+. ++.+|+++++  +++++++
T Consensus       110 al~~~~~~l~----~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~~~~~  183 (417)
T 3g7q_A          110 AFFYLFNLFA----GRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGEETGM  183 (417)
T ss_dssp             HHHHHHHHHS----BC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCTTEEE
T ss_pred             HHHHHHHHHc----CCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--cccCceE
Confidence            9999999998    7776     89987 888888776654331   1234444444331 3457999988  7889999


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEeccccccCCCC--ceEEE
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      |++++++||+|.+.|   +++|+++|++||+++|+|++|+....     .......+.++++.|++| ++.+|  +|+++
T Consensus       184 v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK-~~~~G~r~G~~~  262 (417)
T 3g7q_A          184 ICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSK-LGLPGSRCGIII  262 (417)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGG-GTCTTSCCEEEE
T ss_pred             EEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechh-ccCCCcceEEEE
Confidence            999999999999999   88899999999999999999974321     111122357889999999 45444  89999


Q ss_pred             EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH--HHhhHH-HHHHHHHHHHHHHHHHhhcCCC--eEEeC
Q 040741          270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA--KKEMDY-DHKRITALHDRLLNGIKEKLDG--VVVNG  344 (457)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~--~~~~~~-~~~~~~~~~~~l~~~l~~~~~~--~~~~~  344 (457)
                      ++++..+++.......       ....+.....++...++..  ...+.+ +.++++++.+++.+.|.+.+++  +.+..
T Consensus       263 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  335 (417)
T 3g7q_A          263 ANDKTITAIANMNGII-------SLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK  335 (417)
T ss_dssp             CCHHHHHHHHHHHHHH-------CCCCCSHHHHHHHHHHHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC
T ss_pred             eCHHHHHHHHHhhcce-------eeCCCcHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC
Confidence            8876655554433211       1133444444443444321  111222 5667777888888888764553  56654


Q ss_pred             CCCCcccceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          345 SMERRYIGNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      +..   ..++.+.++.  .+..++...+  +||.+.+|..|.+....+          .....++|||+++.  ++++|+
T Consensus       336 ~~~---g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~----------~~~~~~~iRis~~~--~~~~i~  400 (417)
T 3g7q_A          336 PEG---AIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKP----------WPHTHQCMRMNYVP--EPDKIE  400 (417)
T ss_dssp             CCB---SSEEEEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSC----------CGGGGGEEEEESCS--CHHHHH
T ss_pred             CCc---ceEEEEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccc----------cccCCCeEEEEecC--CHHHHH
Confidence            321   3444555653  4566777666  699999998876521100          00113799999986  899999


Q ss_pred             HHHHHHHHHHHHHHh
Q 040741          421 RAIELTVKQVEKLRE  435 (457)
Q Consensus       421 ~~~~~l~~~~~~~~~  435 (457)
                      +++++|+++++++..
T Consensus       401 ~~~~~l~~~l~~~~~  415 (417)
T 3g7q_A          401 AGVKILAEEIERAWR  415 (417)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999987653

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.96  E-value=1.8e-27  Score=238.62  Aligned_cols=299  Identities=14%  Similarity=0.084  Sum_probs=220.8

Q ss_pred             HHHHHHHHHHHHHhCCCC---------CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCc
Q 040741          101 VAVETARSQIADLIGASP---------KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGF  171 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~---------~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~  171 (457)
                      +..+.+.+.+++..|.+.         +++++|+|+++|+.++++++.    ++||+|++..+.|.++...++..   |.
T Consensus        82 ~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~----~~gd~Vlv~~p~y~~~~~~~~~~---g~  154 (425)
T 2r2n_A           82 ELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMII----NPGDNVLLDEPAYSGTLQSLHPL---GC  154 (425)
T ss_dssp             HHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHGGG---TC
T ss_pred             HHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhC----CCCCEEEEeCCCcHHHHHHHHHc---CC
Confidence            455666666667678753         579999999999999999998    89999999999999988776544   99


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcC------------CCceEEEE-eccccccccccChH---HHHHHHHhcCCcEEEehhh
Q 040741          172 EITYLPVGADGIVNLDELRAAIR------------PDTGLISV-MAVNNEIGVIQPME---EIGQICKEFKIPFHTDAAQ  235 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~------------~~t~li~i-~~~~~~~G~~~~l~---~i~~l~~~~~v~li~D~a~  235 (457)
                      +++.++.+.++ +|+++|+++++            +++++|++ ++++||+|.+.|.+   +|.++|++||+++|+|++|
T Consensus       155 ~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~De~~  233 (425)
T 2r2n_A          155 NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIEDDPY  233 (425)
T ss_dssp             EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCc
Confidence            99999887654 89999999987            45778765 78999999999855   8999999999999999999


Q ss_pred             hc----CCCccc---CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHH
Q 040741          236 AL----GKIPVD---VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS  306 (457)
Q Consensus       236 ~~----g~~~~~---~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~  306 (457)
                      +.    |.....   +...+.++++.|++|.+| +|  +|+++++++.++++......       ...+.+.....++..
T Consensus       234 ~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~  305 (425)
T 2r2n_A          234 YFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPLIERVILHIQV-------STLHPSTFNQLMISQ  305 (425)
T ss_dssp             GGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHHHHHHHHHHHT-------TTCSSCHHHHHHHHH
T ss_pred             ccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHHHHHHHHHHHH-------hcCCCCHHHHHHHHH
Confidence            83    221112   222345688999999887 56  79999998766655543321       123566777777777


Q ss_pred             HHHHH-----HHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCCCCcccceEEEEEcc-ccchH-HHhcc--cCeEec
Q 040741          307 ACEIA-----KKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSMERRYIGNLNLSFAY-VEGES-LLMGL--KEVAVS  376 (457)
Q Consensus       307 al~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~l--~~i~~~  376 (457)
                      +++..     .+.+++..++++++++++.+.|++.++++. +..+ ..  +.++.+.++. .+..+ +...+  +||.+.
T Consensus       306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p-~~--g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~  382 (425)
T 2r2n_A          306 LLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP-AA--GMFLWIKVKGINDVKELIEEKAVKMGVLML  382 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC-SB--SSEEEEEETTCSCCHHHHHTHHHHTTEECE
T ss_pred             HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC-Cc--eEEEEEEeCCCCCHHHHHHHHHHHCCcEEe
Confidence            77653     234677888889999999999987456763 4332 22  4455666654 23444 34444  699999


Q ss_pred             ccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          377 SGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       377 ~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +|..|...              .....+++||+++. .+++++++++++|++++++.
T Consensus       383 pg~~f~~~--------------~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~~  424 (425)
T 2r2n_A          383 PGNAFYVD--------------SSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIKES  424 (425)
T ss_dssp             EGGGGSSS--------------TTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhcCC--------------CCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHh
Confidence            99876431              11223799999984 48999999999999998653

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.96  E-value=1e-28  Score=240.60  Aligned_cols=320  Identities=22%  Similarity=0.210  Sum_probs=218.2

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      ..|+|+.+.+..+++++.+++.+....        ...|+  ..+...++++++++++|.+  ++++++|||+|+.++++
T Consensus         4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~--------~~~y~--~~~~~~~l~~~la~~~g~~--~~~~~~~gt~a~~~~~~   71 (347)
T 1jg8_A            4 MMIDLRSDTVTKPTEEMRKAMAQAEVG--------DDVYG--EDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIM   71 (347)
T ss_dssp             -CEECSCGGGCCCCHHHHHHHHTCCCC--------CGGGT--CCHHHHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHH
T ss_pred             eEEEeccccCCCCCHHHHHHHhcCCCC--------CcccC--CChHHHHHHHHHHHHhCCc--eEEEecCcHHHHHHHHH
Confidence            457899888888889999888654311        01111  1246778999999999985  48999999999999998


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC------CceEEEEecccccc-
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP------DTGLISVMAVNNEI-  209 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~------~t~li~i~~~~~~~-  209 (457)
                      ++.    ++||+|+++.++|.+.......+...|++++.+ .+.++.+|++++++++++      ++++|++++++||+ 
T Consensus        72 ~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~  146 (347)
T 1jg8_A           72 AHT----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSG  146 (347)
T ss_dssp             HHC----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTT
T ss_pred             Hhc----CCCCEEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccC
Confidence            887    899999999999977654222234459999988 555677899999999985      68999999999999 


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---cccCCC--CcccEEEeccccccCCCCce-EEEEecCCCccccc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVDVEK--WNVSLMSLSGHKIYGPKGVG-ALYMRRRPRIRVEP  280 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~--~~~Di~~~s~~K~~g~~G~G-~l~~~~~~~~~~~~  280 (457)
                      |.+.|   +++|.++|++||+++++|++|.++..   ..+...  .+.|.+++|+||.+|++ +| +++.+++.++++..
T Consensus       147 G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~-~G~~~~~~~~~~~~~~~  225 (347)
T 1jg8_A          147 GRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARK  225 (347)
T ss_dssp             SBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCC-ceEEEEcCHHHHHHHHH
Confidence            99987   46888999999999999999854321   111111  25788889999976644 45 55666555444433


Q ss_pred             cccCCccccccccCCC--ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          281 LINGGGQERGIRSGTL--PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~--~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      .....       .++.  +.....+...+++.   ..+. .++..++++++.+.|++ + ++.+...+  ...+++.+.+
T Consensus       226 ~~~~~-------~~~~~~~~~~~~~~~~~l~~---~~~~-~~~~~~~~~~l~~~L~~-~-~~~~~~~~--~~~~~~~~~~  290 (347)
T 1jg8_A          226 ARKML-------GGGMRQAGVLAAAGIIALTK---MVDR-LKEDHENARFLALKLKE-I-GYSVNPED--VKTNMVILRT  290 (347)
T ss_dssp             HHHHH-------TCCCSSTHHHHHHHHHHHHH---SSTT-HHHHHHHHHHHHHHHHH-H-TCBCCGGG--CCSSEEEEEC
T ss_pred             HHHHc-------CCchhHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHh-c-CceeccCC--CcceEEEEEc
Confidence            22111       0111  21222222223322   2222 23344567888888887 5 55542211  1245566666


Q ss_pred             c--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          359 A--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       359 ~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +  +.+..++...|  +||.+.++.                       .+.+||+++..++++|+++++++|++++++
T Consensus       291 ~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~  345 (347)
T 1jg8_A          291 DNLKVNAHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK  345 (347)
T ss_dssp             TTSSSCHHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCHHHHHHHHHHCCCEEecCC-----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence            5  34466777666  588876532                       168999998889999999999999998764

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.96  E-value=6.8e-28  Score=242.10  Aligned_cols=332  Identities=15%  Similarity=0.130  Sum_probs=235.2

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCCCCcEEEeCChHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GASPKEIIFTSGATES  130 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~~~~i~~t~g~T~a  130 (457)
                      .+.|+|+.+.+. +.++.+.+++.+.+.... +.+. .+.|+  ......++++.+++++    ++++++++||+|++++
T Consensus        56 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~a  131 (432)
T 3ei9_A           56 AQVISLGIGDTTEPIPEVITSAMAKKAHELS-TIEG-YSGYG--AEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCD  131 (432)
T ss_dssp             CCCEECSSCCCCSCCCHHHHHHHHHHHHHTT-STTT-CCCCC--CTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHH
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhccc-ccCC-ccCCC--CCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHH
Confidence            467888887666 788999999999987532 2111 11122  1124567778888875    7788899999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC---------cEEEEEeCCCCC--CCCHHHHHHhcCCCceE
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG---------FEITYLPVGADG--IVNLDELRAAIRPDTGL  199 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G---------~~v~~v~~~~~~--~~d~~~le~~i~~~t~l  199 (457)
                      +.+ +..+.    ++||.|+++.+.|+++...++.++..|         .++++++.+.++  ..|+++     .+++++
T Consensus       132 l~~-l~~l~----~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~  201 (432)
T 3ei9_A          132 ISR-LQVMF----GSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST-----VGRTDI  201 (432)
T ss_dssp             HHH-HHHHH----CTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG-----CCCCSE
T ss_pred             HHH-HHHHc----CCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh-----CCCCCE
Confidence            987 56666    799999999999999999988874333         367888887432  344332     367889


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC---CcccCC----CCcccEEEeccccccCCCC--ceE
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK---IPVDVE----KWNVSLMSLSGHKIYGPKG--VGA  267 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~---~~~~~~----~~~~Di~~~s~~K~~g~~G--~G~  267 (457)
                      |++++++||+|.+.+   +++|+++|++||+++|+|++|+.+.   .+..+.    ..+.++++.|++|.+|..|  +|+
T Consensus       202 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~r~G~  281 (432)
T 3ei9_A          202 IFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGVRLGW  281 (432)
T ss_dssp             EEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTTCCEE
T ss_pred             EEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCcccceEE
Confidence            999999999999987   6677778999999999999998432   222221    1245789999999887665  899


Q ss_pred             EEEecCCC--------ccccccccCCccccccccCCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          268 LYMRRRPR--------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       268 l~~~~~~~--------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                      ++++++.+        ..+.....       ....+++.....++.+++. ...+.+++..++++++++++.+.|++ + 
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-  352 (432)
T 3ei9_A          282 TVIPKKLLYSDGFPVAKDFNRIIC-------TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTS-L-  352 (432)
T ss_dssp             EECCTTCBCTTSCBHHHHHHHHHH-------HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-
T ss_pred             EEEChHHhhcchHHHHHHHHHHhc-------cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH-C-
Confidence            99987762        22211111       1223556666666555654 23345788899999999999999998 5 


Q ss_pred             CeEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          339 GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      ++.+.++..   ..++.+.+++.+..++...+   .||.+.+|..|.+                 .+.++|||++.  .+
T Consensus       353 g~~~~~~~~---~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~-----------------~~~~~iRis~~--~~  410 (432)
T 3ei9_A          353 GYDVYGGKN---APYVWVHFPNQSSWDVFAEILEKTHVVTTPGSGFGP-----------------GGEGFVRVSAF--GH  410 (432)
T ss_dssp             TCCEEECSS---SSEEEEECTTSCHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTEEEEECC--SC
T ss_pred             CceecCCCc---ceEEEEECCCCCHHHHHHHHHHHCCEEEeCchHhCC-----------------CCCCEEEEEec--CC
Confidence            776664322   34456666655556666655   3999999876643                 12389999974  48


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEK  432 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~  432 (457)
                      ++++++++++|++--..
T Consensus       411 ~e~l~~~l~rl~~~~~~  427 (432)
T 3ei9_A          411 RENILEACRRFKQLYKH  427 (432)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhh
Confidence            99999999999876543

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=99.96  E-value=2.6e-27  Score=237.59  Aligned_cols=338  Identities=9%  Similarity=0.022  Sum_probs=229.3

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++.      ..+|++.+++.+.+.....++.+     ++. .+...++++.++++++.++++++|++|||+
T Consensus        41 ~g~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~-----~~~-~~~~~~l~~~la~~~~~~~~~v~~~~ggte  114 (429)
T 1s0a_A           41 DGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG-----GIT-HAPAIELCRKLVAMTPQPLECVFLADSGSV  114 (429)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCS-----SEE-CHHHHHHHHHHHHHSCTTCCEEEEESSHHH
T ss_pred             CCCEEEEcCccHhhccCCCCCHHHHHHHHHHHHhccccccc-----ccC-CHHHHHHHHHHHHhCCCCCCEEEEeCCHHH
Confidence            455789986654      25899999999998764332211     111 145678888999999988889999999999


Q ss_pred             HHHHHHHHhhhhhc---CCCCEEEEcCCCCcc-hHHHHHHHH-----hc-----CcEEEEEeCCC------CCCCCHHHH
Q 040741          130 SNNVSIKGVMHFYK---DKKRHVITTQTEHKC-VLDSCRHLQ-----QE-----GFEITYLPVGA------DGIVNLDEL  189 (457)
Q Consensus       130 a~~~al~~~~~~~~---~~g~~vi~~~~~h~~-~~~~~~~~~-----~~-----G~~v~~v~~~~------~~~~d~~~l  189 (457)
                      |++++++++..+..   +++++|++..+.|.. ...+.....     ..     ...+..++.+.      .+.+|++++
T Consensus       115 a~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  194 (429)
T 1s0a_A          115 AVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGF  194 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHH
Confidence            99999997653322   258889888865544 443332211     00     11355565542      245899999


Q ss_pred             HHhcC---CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCCCCcccEEEecc
Q 040741          190 RAAIR---PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVEKWNVSLMSLSG  256 (457)
Q Consensus       190 e~~i~---~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~~~~~Di~~~s~  256 (457)
                      +++++   +++++|+++++ +|++|.+.|    +++|.++|++||+++|+|++|+ +|...    .+.....+|+++  +
T Consensus       195 ~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t--~  272 (429)
T 1s0a_A          195 ARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILC--L  272 (429)
T ss_dssp             HHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEE--E
T ss_pred             HHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEE--e
Confidence            99987   57888888888 899998887    9999999999999999999997 54321    121223467775  5


Q ss_pred             ccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          257 HKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       257 ~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      +|.+| + .++|+++++++.++.+..... ..... ....+.++..++++.++++.+.+  +...++.+++++++.+.|+
T Consensus       273 sK~l~~G~~~iG~~~~~~~~~~~l~~~~~-~~~~~-~~t~~~n~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~L~  348 (429)
T 1s0a_A          273 GKALTGGTMTLSATLTTREVAETISNGEA-GCFMH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQLA  348 (429)
T ss_dssp             CGGGGTSSSCCEEEEECHHHHHHHHTSTT-SSCSC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHG
T ss_pred             cccccCCCccceEEEeCHHHHHHhhcCCC-ccccc-CCCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence            59544 4 568999998765544432100 00000 01224577777888888887665  3567788888999999987


Q ss_pred             hcC---CCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          335 EKL---DGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       335 ~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      + +   +++.....    .+.++.+.++. .+...+...|  +||.+.+.                        .+.|||
T Consensus       349 ~-l~~~~~~~~~~~----~g~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~------------------------~~~iRi  399 (429)
T 1s0a_A          349 P-ARDAEMVADVRV----LGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLIYL  399 (429)
T ss_dssp             G-GGGCTTEEEEEE----ETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEEEE
T ss_pred             H-HhcCCCEEEEEE----eeEEEEEEECCcccHHHHHHHHHHCCCEEecc------------------------CCEEEE
Confidence            7 4   55542211    13455556653 3455666655  58877532                        168999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +++..++++|+++++++|++++++++
T Consensus       400 s~~~~~t~e~i~~~~~~l~~~~~~~~  425 (429)
T 1s0a_A          400 MPPYIILPQQLQRLTAAVNRAVQDET  425 (429)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTSSGG
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999876543

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.96  E-value=3.5e-28  Score=235.87  Aligned_cols=305  Identities=19%  Similarity=0.134  Sum_probs=228.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG---ASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~i~~t~g~T~a~  131 (457)
                      .+++||+.+.+. +.++++.+++.+.+....      .+.|+.   ....++++.++++++   ++++++++|+|+|+++
T Consensus        19 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~---~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al   89 (335)
T 1uu1_A           19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDA------LRIYYD---SPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (335)
T ss_dssp             CCSEEESSCCCSSCCCHHHHHHHHHTCCGGG------GGSCCC---SSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHH
T ss_pred             CcceECCCCCCCCCCCHHHHHHHHHHhhhhh------hhcCCC---CchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHH
Confidence            467999998885 678999999999873210      111111   136789999999999   8888999999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      +++++++       |++|++. +.|.++...++..   |.+++.++.+.++.+|++++     +++++|++++++||+|.
T Consensus        90 ~~~~~~~-------gd~Vl~~-p~y~~~~~~~~~~---g~~~~~v~~~~~~~~d~~~l-----~~~~~v~l~~p~nptG~  153 (335)
T 1uu1_A           90 YVMMLMF-------DRSVFFP-PTYSCYRIFAKAV---GAKFLEVPLTKDLRIPEVNV-----GEGDVVFIPNPNNPTGH  153 (335)
T ss_dssp             HHHHHHS-------SEEEECS-SSCHHHHHHHHHH---TCEEEECCCCTTSCCCCCCC-----CTTEEEEEESSCTTTCC
T ss_pred             HHHHHHh-------CCcEEEC-CCcHHHHHHHHHc---CCeEEEeccCCCCCCCHHHc-----CCCCEEEEeCCCCCCCC
Confidence            9998876       6899999 9999988777665   99999999876667888776     57899999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcC-C-Cccc-CCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALG-K-IPVD-VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g-~-~~~~-~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      +.|.+++.++++.+| ++|+|++|+.. . .... ....+.++++.|++|.+|++|  +|+++++++..+++.....   
T Consensus       154 ~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~~~~l~~~~~---  229 (335)
T 1uu1_A          154 VFEREEIERILKTGA-FVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRL---  229 (335)
T ss_dssp             CCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGGGGTCSSEEEEEESTTTTTCGGGCCEEEEECHHHHHHHHHHSC---
T ss_pred             CCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHHhhhCCCEEEEecchhhcCCcccCeEEEEeCHHHHHHHHHhcC---
Confidence            999999999999989 89999999732 1 1122 233456899999999888666  7999998766555544321   


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                            ..+.+.....++.++++. .+.+++..++++++++++.+.|.+ + ++.+...  .  ..++.+.++..+..++
T Consensus       230 ------~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~--~--~~~~~~~~~~~~~~~~  296 (335)
T 1uu1_A          230 ------PFNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDS--R--GNFVFVFMEKEEKERL  296 (335)
T ss_dssp             ------TTCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCCBCCC--C--SSEEEEECCTHHHHHH
T ss_pred             ------CCCcCHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHH-C-CcEEcCC--C--CeEEEEECCCCCHHHH
Confidence                  126677777777677765 335778888999999999999988 5 5554321  1  3445555543234556


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ...|  +||.+.++                        .+++||+++   +.+|+++++++|+++
T Consensus       297 ~~~l~~~gi~v~~~------------------------~~~iRis~~---~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          297 LEHLRTKNVAVRSF------------------------REGVRITIG---KREENDMILRELEVF  334 (335)
T ss_dssp             HHHHHHHTEEEEEE------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCEEEEEC------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence            5555  68888652                        178999996   368899999988753

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.96  E-value=4e-28  Score=241.29  Aligned_cols=332  Identities=16%  Similarity=0.144  Sum_probs=229.8

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHH--hC-CCCCcEEEeCChHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADL--IG-ASPKEIIFTSGATES  130 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~--~g-~~~~~i~~t~g~T~a  130 (457)
                      ..+.++|+.+.+. +.++.+.+++.+.+.... ++.. .+.|+  ......++++.++++  .| ++++++++|+|++++
T Consensus        32 ~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~-~~~y~--~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~a  107 (400)
T 3asa_A           32 QHTVINLSIGDTTQPLNASVAEAFASSIARLS-SPTT-CRGYG--PDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVD  107 (400)
T ss_dssp             TSCCEECSSCCCCCCCCHHHHHHHHHHHHHHT-SSSC-CCCCC--CTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred             CCceEeccCCCCCCCCCHHHHHHHHHHHhccc-cccc-ccCCC--CCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHH
Confidence            3567889888775 678999999999886532 1110 11121  113467899999999  57 677889999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +.+++ .+.    ++|++|++..+.|.++...++..   |.+ ++.++.+.++.++.+ +++.  +++++|++++++||+
T Consensus       108 l~~~~-~~~----~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~-l~~~--~~~~~v~l~~p~npt  176 (400)
T 3asa_A          108 LFRLL-SFF----GPNQTVAIQDPSYPAYLDIARLT---GAKEIIALPCLQENAFFPE-FPED--THIDILCLCSPNNPT  176 (400)
T ss_dssp             HHHHH-HHH----CSSCEEEEEESCCHHHHHHHHHT---TCSEEEEEECCGGGTTCCC-CCTT--CCCSEEEEESSCTTT
T ss_pred             HHHHH-HHc----CCCCEEEECCCCcHHHHHHHHHc---CCcceEecccchhcCcccC-hhhc--cCccEEEEeCCCCCC
Confidence            99854 444    68999999999999988766554   888 999998743322221 2221  578899999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhh-cC---CCcccCCCC----cccEEEeccccccCCCC--ceEEEEecCCC-
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQA-LG---KIPVDVEKW----NVSLMSLSGHKIYGPKG--VGALYMRRRPR-  275 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~-~g---~~~~~~~~~----~~Di~~~s~~K~~g~~G--~G~l~~~~~~~-  275 (457)
                      |.+.|   +++|+++|+++|+++|+|++|+ ++   ..+..+...    +.++++.|++|.+|++|  +|+++++++.. 
T Consensus       177 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~GlriG~~~~~~~~~~  256 (400)
T 3asa_A          177 GTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGIRLGWTVIPQELTY  256 (400)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTCCCEEEECCTTCBC
T ss_pred             CCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcchheeEEeeChhhcc
Confidence            99998   5678899999999999999998 42   222233222    24588999999888666  79999987653 


Q ss_pred             ------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          276 ------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       276 ------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                            ..+....      .....++.+.....++..+++..  .+++..++++++++++.+.|++ + ++.+..+..  
T Consensus       257 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--  324 (400)
T 3asa_A          257 ADGHFVIQDWERF------LSTTFNGASIPAQEAGVAGLSIL--PQLEAIHYYRENSDLLRKALLA-T-GFEVFGGEH--  324 (400)
T ss_dssp             TTSCBHHHHHHHH------HHHHCCCCCHHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHHHH-T-TCEEEECSS--
T ss_pred             chhhhHHHHHHHH------hccCccCCChHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHHHHH-C-CCeeeCCCC--
Confidence                  2221100      01112356766666666666543  5788889999999999999998 5 777765321  


Q ss_pred             ccceEEEE-Ec-cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          350 YIGNLNLS-FA-YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       350 ~~~~~~~~-~~-~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                       ..++.+. ++ +.+..++...+   .||.+.+|..|.+                 ...+++||++  .+++++++++++
T Consensus       325 -~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~-----------------~~~~~iRis~--~~~~e~i~~~l~  384 (400)
T 3asa_A          325 -APYLWVKPTQANISDRDLFDFFLREYHIAITPGIGFGR-----------------SGSGFVRFSS--LGKREDILAACE  384 (400)
T ss_dssp             -SSEEEEECCCTTCCTTTHHHHHHHHHSEECEEGGGGCG-----------------GGTTCEEEEC--CSCHHHHHHHHH
T ss_pred             -ceEEEEeccCCCCCHHHHHHHHHHhCCEEEeChhHhCC-----------------CCCCEEEEEe--eCCHHHHHHHHH
Confidence             3445555 44 23445566554   3999999876642                 1137899994  468999999999


Q ss_pred             HHHHHHHHH
Q 040741          425 LTVKQVEKL  433 (457)
Q Consensus       425 ~l~~~~~~~  433 (457)
                      +|++++++.
T Consensus       385 ~l~~~~~~~  393 (400)
T 3asa_A          385 RLQMAPALQ  393 (400)
T ss_dssp             HHHC-----
T ss_pred             HHHHHHHhh
Confidence            999888653

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.96  E-value=3.5e-28  Score=241.87  Aligned_cols=334  Identities=15%  Similarity=0.103  Sum_probs=226.7

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhh
Q 040741           62 DMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHF  141 (457)
Q Consensus        62 ~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~  141 (457)
                      |+.+++.+-+.+.+++..+.     ++. ..+.|+....+...++++.+++++|.+  ++++++||++|+.++++++.  
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~Y~~~~~~~~~~l~~~ia~~~g~~--~~i~~~~g~~ai~~~~~~l~--   98 (404)
T 1e5e_A           29 IYQTSTFVFDNCQQGGNRFA-----GQE-SGYIYTRLGNPTVSNLEGKIAFLEKTE--ACVATSSGMGAIAATVLTIL--   98 (404)
T ss_dssp             CCCCSBCCCSSHHHHHHHHT-----TSS-CSCCBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHHHHC--
T ss_pred             CcCCCccccCCHHHHHHhhc-----CCc-CCccccCCcChHHHHHHHHHHHHhCCC--cEEEeCChHHHHHHHHHHHh--
Confidence            44455555555555543221     111 123333333467889999999999985  58888889999999999987  


Q ss_pred             hcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHH
Q 040741          142 YKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQ  220 (457)
Q Consensus       142 ~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~  220 (457)
                        ++|++|+++.+.|+++...+. .++..|.+++.++.+     |++++++++++++++|++++++||+|.+.|+++|.+
T Consensus        99 --~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~~~t~~v~l~~p~NptG~v~~l~~i~~  171 (404)
T 1e5e_A           99 --KAGDHLISDECLYGCTHALFEHALTKFGIQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCK  171 (404)
T ss_dssp             --CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHH
T ss_pred             --CCCCEEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcCCCCcEEEEECCCCCCCcccCHHHHHH
Confidence              899999999999999888444 245569999999876     889999999999999999999999999999999999


Q ss_pred             HHHh-cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccC-CCC--ceEEEEecCCCc-cccccccCCccccccccCC
Q 040741          221 ICKE-FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYG-PKG--VGALYMRRRPRI-RVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       221 l~~~-~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g-~~G--~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t  295 (457)
                      +|++ +|+++++|++|+.+...... .++.|+++.|+||++| +.+  +|+++++++.+. ++.+...++      ..+.
T Consensus       172 la~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~S~sK~~~~~g~ri~G~~~~~~~~~~~~l~~~~~~~------~g~~  244 (404)
T 1e5e_A          172 DAHSQEGVLVIADNTFCSPMITNPV-DFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDI------TGSV  244 (404)
T ss_dssp             HHHTSTTCEEEEECTTTCTTTCCGG-GGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCC------CCCC
T ss_pred             HHHhhcCCEEEEECCCchhhhCCcc-ccCCEEEEEcCccccCCCCCCeEEEEEECHHHHHHHHHHHHHhC------CCCC
Confidence            9999 99999999999977642222 3578999999999766 443  499999887655 555443321      0124


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeE-EeCCC-------------CCcccceEEEEEccc
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVV-VNGSM-------------ERRYIGNLNLSFAYV  361 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~-------------~~~~~~~~~~~~~~~  361 (457)
                      .+.....++..+++    .++.+.++..++.+.+.+.+++ .+.+. +.-+.             ....++++.+.++..
T Consensus       245 ~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~  319 (404)
T 1e5e_A          245 ISPHDAWLITRGLS----TLNIRMKAESENAMKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG  319 (404)
T ss_dssp             CCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH
T ss_pred             CCHHHHHHHHHhHh----HHHHHHHHHHHHHHHHHHHHHh-CCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCCC
Confidence            45544444444443    2455566667778888888877 55442 21111             112366666666532


Q ss_pred             cchHHHhcc--cCeEecc---c------CccCCCC--CChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSS---G------SACTSAS--LEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~---g------~~~~~~~--~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                       .......+  .+|.+..   |      .+|.+..  ..+...+...|+++    +.|||+++.    |+++.+++.|++
T Consensus       320 -~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~----~~iRis~g~----e~~~~li~~l~~  390 (404)
T 1e5e_A          320 -FEGAKKLLDNLKLITLAVSLGGCESLIQHPASMTHAVVPKEEREAAGITD----GMIRLSVGI----EDADELIADFKQ  390 (404)
T ss_dssp             -HHHHHHHHHTCSSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHH
T ss_pred             -HHHHHHHHHhCCCceeccCCCCcceeeecccccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHH
Confidence             12222222  3553222   2      2343221  12333445556543    899999997    899999999999


Q ss_pred             HHHHH
Q 040741          429 QVEKL  433 (457)
Q Consensus       429 ~~~~~  433 (457)
                      +++.+
T Consensus       391 al~~~  395 (404)
T 1e5e_A          391 GLDAL  395 (404)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.96  E-value=2.6e-27  Score=234.32  Aligned_cols=305  Identities=11%  Similarity=0.045  Sum_probs=220.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEE
Q 040741           96 GWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEIT  174 (457)
Q Consensus        96 ~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~  174 (457)
                      ++...+...++++.+++++|.+ +.+++ ++||+|++++++++.    ++|++|+++.++|.+....++. ++..|.+++
T Consensus        47 ~~~~~~~~~~l~~~la~~~~~~-~~i~~-~sGt~a~~~~~~~~~----~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~  120 (386)
T 1cs1_A           47 SRRGNPTRDVVQRALAELEGGA-GAVLT-NTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCYRVL  120 (386)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTCS-EEEEE-SSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSCEEE
T ss_pred             eCCCCccHHHHHHHHHHHhCCC-cEEEe-CCHHHHHHHHHHHHh----CCCCEEEEecCCcHhHHHHHHHHHHhcCCEEE
Confidence            3333467889999999999986 44555 556999999999987    8899999999999987776543 356699999


Q ss_pred             EEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEe
Q 040741          175 YLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSL  254 (457)
Q Consensus       175 ~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~  254 (457)
                      .++.+     |++++++++++++++|++++++||+|.+.|+++|.++|++||+++|+|++|+.+...... ..++|+++.
T Consensus       121 ~~~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~~~di~~~  194 (386)
T 1cs1_A          121 FVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQNPL-ALGADLVLH  194 (386)
T ss_dssp             EECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GGTCSEEEE
T ss_pred             EeCCC-----CHHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCcc-ccCceEEEE
Confidence            99865     899999999999999999999999999999999999999999999999999987664333 457899999


Q ss_pred             ccccccC-CCCc--eEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040741          255 SGHKIYG-PKGV--GALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL  330 (457)
Q Consensus       255 s~~K~~g-~~G~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~  330 (457)
                      |+||++| +.+.  |++++++ +..+++.+...++       .++.++...+++..+++    .+....++..++.+++.
T Consensus       195 s~sK~~~~~~~~~~G~~~~~~~~l~~~l~~~~~~~-------~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~l~  263 (386)
T 1cs1_A          195 SCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI-------GVTGGAFDSYLLLRGLR----TLVPRMELAQRNAQAIV  263 (386)
T ss_dssp             ETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------TCBCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHH
T ss_pred             cCcccccCCCCceeEEEEeCcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHhccc----HHHHHHHHHHHHHHHHH
Confidence            9999765 5442  9999986 5555555443321       12445444443333332    34556667778888888


Q ss_pred             HHHhhcCCCeEEe-CCC-------------CCcccceEEEEEccccchHHHhcc--cCeEecc---c------CccCCC-
Q 040741          331 NGIKEKLDGVVVN-GSM-------------ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS---G------SACTSA-  384 (457)
Q Consensus       331 ~~l~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~---g------~~~~~~-  384 (457)
                      +.|.+ ++.+.-. -+.             ....++++.+.+.+. .+.+...+  +||.+..   |      ..|++. 
T Consensus       264 ~~l~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gi~~~~~~~g~~~sl~~~~~~~~  341 (386)
T 1cs1_A          264 KYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGD-EQTLRRFLGGLSLFTLAESLGGVESLISHAATMT  341 (386)
T ss_dssp             HHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC-HHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGGTT
T ss_pred             HHHhc-CCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECCC-HHHHHHHHHhCCcceEcccCCCcceeeecccccc
Confidence            88888 6665432 111             122366777777543 34444444  5777763   3      334322 


Q ss_pred             -CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          385 -SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       385 -~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                       ...|+.++...|+.+    +.|||+++..+++++|+.+.++|+++
T Consensus       342 ~~~~~~~~~~~~g~~~----~~iRis~~~~~~~~~i~~l~~al~~~  383 (386)
T 1cs1_A          342 HAGMAPEARAAAGISE----TLLRISTGIEDGEDLIADLENGFRAA  383 (386)
T ss_dssp             TTTSCHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHhcCCCC----CeEEEEEccCCHHHHHHHHHHHHHHh
Confidence             234566777777754    89999999977778887777777654

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.96  E-value=5.4e-29  Score=249.97  Aligned_cols=334  Identities=14%  Similarity=0.095  Sum_probs=238.5

Q ss_pred             CCcEEecCCCC-C-CCCHHH--HHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-----CCCCCc---EEE
Q 040741           56 GRPLYLDMQAT-T-PVDPRV--LDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-----GASPKE---IIF  123 (457)
Q Consensus        56 ~~~i~l~~~~~-~-~~~~~v--~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-----g~~~~~---i~~  123 (457)
                      .+.+.|..+.+ . ..++.+  .+++.+.+....      ..  +|.......++++.+++++     ++++++   +++
T Consensus        47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~------~~--~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~  118 (430)
T 2x5f_A           47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE------IF--PYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIV  118 (430)
T ss_dssp             TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG------TS--SCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEE
T ss_pred             CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc------cc--ccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEE
Confidence            45666666655 3 234444  666555443200      01  1111123567888888888     888888   999


Q ss_pred             eCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCC---CceE
Q 040741          124 TSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRP---DTGL  199 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~---~t~l  199 (457)
                      |+|+|+|++++++++.    ++||+|++..+.|.++...++.  ..|.+++.++.+. ++.+|++++++++++   ++++
T Consensus       119 t~g~~~al~~~~~~l~----~~gd~Vl~~~p~y~~~~~~~~~--~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~  192 (430)
T 2x5f_A          119 TNALTHGLSLVGDLFV----NQDDTILLPEHNWGNYKLVFNT--RNGANLQTYPIFDKDGHYTTDSLVEALQSYNKDKVI  192 (430)
T ss_dssp             ESHHHHHHHHHHHHHC----CTTCEEEEESSCCTHHHHHHTT--TTCCEEEEECCBCTTSCBCSHHHHHHHHHCCSSEEE
T ss_pred             cCCchHHHHHHHHHHh----CCCCEEEEcCCcCccHHHHHHH--hcCCeEEEEeccCccCCcCHHHHHHHHHhcCCCCEE
Confidence            9999999999999987    8999999999999998776654  0499999998875 457899999999976   7899


Q ss_pred             EEEeccccccccccC---hHHHHHHHHh-----cCCcEEEehhhhcCCC------cc--cCCC-Ccc---cEEEeccccc
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKE-----FKIPFHTDAAQALGKI------PV--DVEK-WNV---SLMSLSGHKI  259 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~-----~~v~li~D~a~~~g~~------~~--~~~~-~~~---Di~~~s~~K~  259 (457)
                      +++++++||+|.+.|   +++|.++|++     ||+++|+|++|+....      ++  .+.. .+.   ++++.|++|.
T Consensus       193 v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~  272 (430)
T 2x5f_A          193 MILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKE  272 (430)
T ss_dssp             EEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHH
T ss_pred             EEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccC
Confidence            999999999999999   8899999999     9999999999985322      11  2222 334   6889999998


Q ss_pred             cCCCC--ceEEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHH-H--HHHhhHHHHHHHHHHHHHHHH
Q 040741          260 YGPKG--VGALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-I--AKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       260 ~g~~G--~G~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~--~~~~~~~~~~~~~~~~~~l~~  331 (457)
                      +|++|  +|++++   +++..+++.......  .+ ....+++.....++..+++ .  ..+.+++..++++++++++.+
T Consensus       273 ~~~~G~riG~~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  349 (430)
T 2x5f_A          273 FFAWGFRVGFMTFGTSDQTTKEVLEAKVKGL--IR-SNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKE  349 (430)
T ss_dssp             TTCGGGCCEEEEEBCCCHHHHHHHHHHHHHH--HH-TTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCeEEEEEecCCHHHHHHHHHHHhhh--hh-cccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            87656  799999   766655554332210  00 0123567777777777776 3  233456688899999999999


Q ss_pred             HHhhcC--CCeEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          332 GIKEKL--DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       332 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      .|++.+  .++.+..+.   .+.++.+.+++.+..++...|   +||.+.+|.                       .+++
T Consensus       350 ~L~~~~~~~g~~~~~~~---~g~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~-----------------------~~~i  403 (430)
T 2x5f_A          350 VVYADQYHSHWQAYDFN---SGYFMAIKVHDVDPEALRKHLIDKYSIGVIALN-----------------------ATDI  403 (430)
T ss_dssp             HHTCGGGTTTEEECCCC---BSSEEEEEESSSCHHHHHHHHHHHHCEECEECS-----------------------SSEE
T ss_pred             HHHhhCCCCCceeeCCC---ceEEEEeCCCCCCHHHHHHHHHHhCCEEEecCC-----------------------CCeE
Confidence            998310  267765432   123455566544566666665   488887651                       2799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ||+++. ++++++++++++|+++++++
T Consensus       404 Ris~~~-~~~e~i~~~~~~l~~~l~~~  429 (430)
T 2x5f_A          404 RIAFSC-VEKDDIPHVFDSIAKAIDDL  429 (430)
T ss_dssp             EEEGGG-SCGGGHHHHHHHHHHHHHHH
T ss_pred             EEEEec-CCHHHHHHHHHHHHHHHHhc
Confidence            999995 48899999999999998765

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.96  E-value=2.8e-28  Score=243.46  Aligned_cols=341  Identities=15%  Similarity=0.195  Sum_probs=230.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      +.| +.+.+++++++.+++.+.+.+.+  ++|.+..+.......+....+++++++++|++++++++++ ||+|+.++++
T Consensus        28 i~l-~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~~s-Gt~a~~~~~~  105 (417)
T 3n0l_A           28 LEM-IASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNS-GSQANQGVYA  105 (417)
T ss_dssp             EEC-CTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEEECCCSS-HHHHHHHHHH
T ss_pred             eee-ecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCcceEecc-HHHHHHHHHH
Confidence            444 33556779999999999886554  3443221111122234444578899999999876666655 5899999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHHHHH--hcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEecccccccccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQ--QEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~--~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~  213 (457)
                      ++.    ++||+|++..++|.+.........  ..++.++.++++.++.+|+++|+++++ +++++|++++++|  |.+.
T Consensus       106 ~~~----~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--G~~~  179 (417)
T 3n0l_A          106 ALI----NPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAY--ARVI  179 (417)
T ss_dssp             HHS----CTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHCCSEEEECCSSC--CSCC
T ss_pred             Hhc----CCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcCCeEEEECCccc--CccC
Confidence            997    899999999999987655222221  235667777777778899999999998 6899998877764  9999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccc-ccCCCCceEEEEe-cCCCccccccccCCc
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHK-IYGPKGVGALYMR-RRPRIRVEPLINGGG  286 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~-~~~~~~~~~~~~~~~  286 (457)
                      |+++|.++|++||+++|+|++|+.|..     +..+.  +.|++++|+|| +.|+.| |+++++ ++..+++......+ 
T Consensus       180 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~--~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~~~~~~~~~-  255 (417)
T 3n0l_A          180 DFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFP--YAHVVSSTTHKTLRGPRG-GIIMTNDEELAKKINSAIFPG-  255 (417)
T ss_dssp             CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTT--TCSEEEEESSTTTCSCSC-EEEEESCHHHHHHHHHHHTTT-
T ss_pred             CHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccc--cceEEEeeCccccCCCCe-eEEEECCHHHHHHHhhhhCCc-
Confidence            999999999999999999999865433     22222  47999999999 446664 999988 45545544433221 


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccc
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEG  363 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  363 (457)
                           ..++++...++++..++.... .++++..++..++++++.+.|.+  .++.+....  .....+.+.+..  .+.
T Consensus       256 -----~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~--~~~~~~~~~~~~~~~~~  326 (417)
T 3n0l_A          256 -----IQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD--RKFKLVSDG--TDNHLVLMSFLDREFSG  326 (417)
T ss_dssp             -----TCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS--CSSSEEEEECTTSSSCH
T ss_pred             -----ccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh--CCceeccCC--CCceEEEEEcccCCCCH
Confidence                 124666777777777776643 45788889999999999999998  577776521  123344455532  345


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~  433 (457)
                      ..+...|  +||.+..+.....             ..+......+|+++...    .+++||++++++|++++++.
T Consensus       327 ~~~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~  389 (417)
T 3n0l_A          327 KDADLALGNAGITANKNTVPGE-------------IRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV  389 (417)
T ss_dssp             HHHHHHHHHTTEECEECCCTTC-------------CSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCeEEeccccCCC-------------CcccCCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence            5565555  5888876432111             01122346799997643    56899999999999998754

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.96  E-value=1.1e-26  Score=232.25  Aligned_cols=307  Identities=15%  Similarity=0.115  Sum_probs=215.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEE-
Q 040741           99 SEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYL-  176 (457)
Q Consensus        99 ~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v-  176 (457)
                      ..+...++++.+++++|.+.  .+++++||+|++++++++.    ++|++|+++.++|.++...+.. ++..|++++++ 
T Consensus        56 ~~~~~~~l~~~la~~~g~~~--~v~~~sGt~A~~~~l~~~~----~~gd~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~  129 (421)
T 2ctz_A           56 MNPTVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGIEVRFTS  129 (421)
T ss_dssp             BCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTCEEEECC
T ss_pred             CChHHHHHHHHHHHHhCCCc--eEEecCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCEEEEEC
Confidence            34678899999999999863  5666778999999999886    8999999999999998887642 35569999998 


Q ss_pred             eCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhh-hcCCCcccCCCCcccEEEec
Q 040741          177 PVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ-ALGKIPVDVEKWNVSLMSLS  255 (457)
Q Consensus       177 ~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~-~~g~~~~~~~~~~~Di~~~s  255 (457)
                      +.+     |+++++++|++++++|++++++|++|.+.|+++|.++|+++|+++|+|++| +.|.. ......++|++++|
T Consensus       130 ~~~-----d~~~l~~~i~~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~-~~~~~~~~Di~~~s  203 (421)
T 2ctz_A          130 REE-----RPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYL-LRPLAWGAALVTHS  203 (421)
T ss_dssp             TTC-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTS-CCGGGGTCSEEEEE
T ss_pred             CCC-----CHHHHHHhhccCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccc-CCccccCCeEEEEC
Confidence            765     899999999999999999999999999999999999999999999999999 87742 12224578999999


Q ss_pred             cccccCCCC--ceEEEEec-C--C----CccccccccCCcccc--------------cc----ccC-CCChhHHHHHHHH
Q 040741          256 GHKIYGPKG--VGALYMRR-R--P----RIRVEPLINGGGQER--------------GI----RSG-TLPTPLIVGFGSA  307 (457)
Q Consensus       256 ~~K~~g~~G--~G~l~~~~-~--~----~~~~~~~~~~~~~~~--------------~~----~~~-t~~~~~~~al~~a  307 (457)
                      ++|++|++|  +|++++.+ +  .    ...+.+...++....              ++    ..| ..++...+.....
T Consensus       204 ~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~  283 (421)
T 2ctz_A          204 LTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG  283 (421)
T ss_dssp             TTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH
T ss_pred             CcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence            999766433  67777753 2  2    223333222211000              00    011 2232222222222


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---------------CcccceEEEEEccc--cchHHHhcc
Q 040741          308 CEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME---------------RRYIGNLNLSFAYV--EGESLLMGL  370 (457)
Q Consensus       308 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~--~~~~~~~~l  370 (457)
                      +    +.+..+.++..++++++.+.|.+ .|++..+..+.               ...++++.|.+.+.  +...++..+
T Consensus       284 l----~~l~~r~~~~~~~a~~l~~~L~~-~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~~~~~~~~~~~l  358 (421)
T 2ctz_A          284 M----ETLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRFISRL  358 (421)
T ss_dssp             H----TTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHHHHTC
T ss_pred             c----chHHHHHHHHHHhHHHHHHHHHh-CCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCCHHHHHHHHHhC
Confidence            2    23455667777899999999999 89988763221               24567788888642  234566666


Q ss_pred             --cCeEecccCccCCC--------CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          371 --KEVAVSSGSACTSA--------SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       371 --~~i~~~~g~~~~~~--------~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                        .++.++.|..|+..        ...+.-.+..+|+++    +.||++++.    ||+|.+++.|++++
T Consensus       359 ~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~----~~vRlS~g~----e~~~~li~~l~~al  420 (421)
T 2ctz_A          359 KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred             CcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCC----CeEEEEeCC----CCHHHHHHHHHHHh
Confidence              45666667544321        111223467788765    899999986    57888888887765

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.96  E-value=4e-27  Score=240.63  Aligned_cols=330  Identities=13%  Similarity=0.067  Sum_probs=228.7

Q ss_pred             CCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           68 PVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      .+|+++++++.+.+....+ ...  .|....+..+..+.+.+.+.+..|  ++++++++|+|+|+|+.+++.++..   +
T Consensus       106 ~~p~~~~~~a~~~l~~~~~~~~~--~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~---~  180 (500)
T 3tcm_A          106 LFSADSISRAKQILAMIPGRATG--AYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIR---N  180 (500)
T ss_dssp             HSCHHHHHHHHHHHTTSTTSCSS--SCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCC---S
T ss_pred             cCCHHHHHHHHHHHHcCCCCcCC--CcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcC---C
Confidence            4777888888777765322 111  111111222333334444444444  5677899999999999999998863   5


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCC------CceEEEEeccccccccccC--
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP--  214 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~--  214 (457)
                      +||.|+++.+.|+++...++..   |.+++.++.+.+  +.+|+++|++++++      ++++|++++++||||.+++  
T Consensus       181 ~gd~Vlv~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~  257 (500)
T 3tcm_A          181 EKDGILVPIPQYPLYSASIALH---GGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEE  257 (500)
T ss_dssp             TTEEEEEEESCCTHHHHHHHHT---TCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHH
T ss_pred             CCCEEEEeCCCcHhHHHHHHHc---CCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHH
Confidence            8999999999999998887766   999999998754  48999999999986      7889999999999999988  


Q ss_pred             -hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCC---------CCcc-cEEEecccccc-CCCC--ceEEEE---ec
Q 040741          215 -MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVE---------KWNV-SLMSLSGHKIY-GPKG--VGALYM---RR  272 (457)
Q Consensus       215 -l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~---------~~~~-Di~~~s~~K~~-g~~G--~G~l~~---~~  272 (457)
                       +++|+++|++||+++|+|++|+.....     ..+.         ..+. .+++.|+||.+ |..|  +|++++   ++
T Consensus       258 ~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~  337 (500)
T 3tcm_A          258 NQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSA  337 (500)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCT
T ss_pred             HHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCH
Confidence             667777799999999999999853221     1110         1112 36677999966 6544  799988   55


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE----------IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                      +.++++.....        ...+++.....++..+++          ...++++++.++++++++++.+.|.+ ++++.+
T Consensus       338 ~~~~~l~~~~~--------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g~~~  408 (500)
T 3tcm_A          338 PVREQIYKIAS--------VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNK-LEGITC  408 (500)
T ss_dssp             THHHHHHHHHH--------TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STTEEC
T ss_pred             HHHHHHHHHHh--------cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCcEE
Confidence            55444443221        123566666666666664          23455788888999999999999999 889888


Q ss_pred             eCCCCCcccceEEEEEccc------------cch-HHH-hcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          343 NGSMERRYIGNLNLSFAYV------------EGE-SLL-MGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~------------~~~-~~~-~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ..+..   +.++...+...            ... .++ ..|  +||.+.+|..|...                .+.+.+
T Consensus       409 ~~~~g---~~~~~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~----------------~g~~~i  469 (500)
T 3tcm_A          409 NEAEG---AMYVFPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQV----------------PGTWHF  469 (500)
T ss_dssp             CCCCB---TTEECCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCC----------------TTCCBE
T ss_pred             ecCCe---EEEEeeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCCCEE
Confidence            75432   22222222211            111 122 333  59999999877531                123689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      |++++  ++++++++++++|+++++++.+
T Consensus       470 Ris~~--~~~e~i~~~i~~l~~~~~~~~~  496 (500)
T 3tcm_A          470 RCTIL--PQEDKIPAVISRFTVFHEAFMS  496 (500)
T ss_dssp             EEESC--SCTTTHHHHHHHHHHHHHHHHH
T ss_pred             EEEEC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            99999  6889999999999999987653

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.96  E-value=7.7e-28  Score=239.22  Aligned_cols=299  Identities=13%  Similarity=0.077  Sum_probs=206.8

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVG  179 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~  179 (457)
                      +...++++.+++++|.+ + .+++++|++|+.+++. +.    ++|++|+++.+.|.+....+.. ++..|+++++++.+
T Consensus        67 p~~~~l~~~la~~~g~~-~-~i~~~sG~~ai~~~~~-l~----~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~v~~~  139 (403)
T 3cog_A           67 PTRNCLEKAVAALDGAK-Y-CLAFASGLAATVTITH-LL----KAGDQIICMDDVYGGTNRYFRQVASEFGLKISFVDCS  139 (403)
T ss_dssp             HHHHHHHHHHHHHHTCS-E-EEEESCHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTGGGGTCEEEEECTT
T ss_pred             chHHHHHHHHHHHhCCC-c-EEEECCHHHHHHHHHH-Hh----CCCCEEEEeCCCcchHHHHHHHHHHHcCCEEEEECCC
Confidence            67889999999999986 3 4555567899999988 76    8999999999999987775543 35669999999876


Q ss_pred             CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC-CcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK-IPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       180 ~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~-v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                           |++++++++++++++|++++++||+|.+.|+++|.++|+++| +++++|++++.+.....+ ..++|+++.|++|
T Consensus       140 -----d~~~l~~~i~~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~~~~-~~~~div~~S~sK  213 (403)
T 3cog_A          140 -----KIKLLEAAITPETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQRPL-ALGADISMYSATK  213 (403)
T ss_dssp             -----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTCCTT-TTTCSEEEEETTT
T ss_pred             -----CHHHHHHhcCcCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccCCcc-ccCCeEEEEcChh
Confidence                 899999999999999999999999999999999999999999 999999999987532222 2578999999999


Q ss_pred             ccC-CCC--ceEEEEe-cCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          259 IYG-PKG--VGALYMR-RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       259 ~~g-~~G--~G~l~~~-~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      ++| +.|  +|+++++ ++..+++.+...+++       ++.++....++..+++    .+..+.++..+++..+.+.++
T Consensus       214 ~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g-------~~~~~~~~~~~~~~l~----~l~~r~~~~~~n~~~l~~~l~  282 (403)
T 3cog_A          214 YMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG-------AVPSPIDCYLCNRGLK----TLHVRMEKHFKNGMAVAQFLE  282 (403)
T ss_dssp             TTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC-------CCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCCeEEEEEECcHHHHHHHHHHHHhcC-------CCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHh
Confidence            655 554  5999986 444455544433221       2445544444433443    334455666667777777776


Q ss_pred             hcCCCe--------------EEeCCCCCcccceEEEEEccccchHHHhcc--cCe---EecccC------ccCCCC--CC
Q 040741          335 EKLDGV--------------VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEV---AVSSGS------ACTSAS--LE  387 (457)
Q Consensus       335 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i---~~~~g~------~~~~~~--~~  387 (457)
                      + .+.+              .+..+.....++++.+.+++.. .+....+  .++   .++.|.      +|.+..  ..
T Consensus       283 ~-~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~~-~~~~~~l~~~~i~~~~~s~G~~~sl~~~p~~~~~~~~  360 (403)
T 3cog_A          283 S-NPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGTL-QHAEIFLKNLKLFTLAESLGGFESLAELPAIMTHASV  360 (403)
T ss_dssp             T-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCH-HHHHHHHHHCSSSEECSCCSSSSCEEECTTTTTTTTS
T ss_pred             c-CCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCCH-HHHHHHHHhCCcceEccCCCCcceeeecccccccccC
Confidence            6 4332              2211111123677777775421 2222222  244   333353      333222  23


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      |+..+..+|+.+    +.|||+++..+++++|+.+.++|+++
T Consensus       361 ~~~~~~~~g~~~----~~iRlSvg~e~~~d~i~~l~~al~~~  398 (403)
T 3cog_A          361 LKNDRDVLGISD----TLIRLSVGLEDEEDLLEDLDQALKAA  398 (403)
T ss_dssp             CHHHHHHHTCCT----TEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhcCCCc----CeEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            455667778753    89999999977777777776666544

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=3.1e-28  Score=244.20  Aligned_cols=302  Identities=13%  Similarity=0.092  Sum_probs=217.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHH--HHHHHHhhhhhcC--C----------CCEEEEcCCCCcchHHHHHHH
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESN--NVSIKGVMHFYKD--K----------KRHVITTQTEHKCVLDSCRHL  166 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~--~~al~~~~~~~~~--~----------g~~vi~~~~~h~~~~~~~~~~  166 (457)
                      ....++++.++++++++++++++|+|+++++  +++++++.    +  +          |++|++..+.|..+...++..
T Consensus        78 ~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~----~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~  153 (427)
T 3ppl_A           78 DGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYI----FGNNDSVQPWSKEETVKWICPVPGYDRHFSITERF  153 (427)
T ss_dssp             SCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHh----ccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHc
Confidence            3567899999999999989999999999999  58888877    4  5          899999999999988777665


Q ss_pred             HhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEe-ccccccccccChH---HHHHHH-HhcCCcEEEehhhhcCCC
Q 040741          167 QQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVM-AVNNEIGVIQPME---EIGQIC-KEFKIPFHTDAAQALGKI  240 (457)
Q Consensus       167 ~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~-~~~~~~G~~~~l~---~i~~l~-~~~~v~li~D~a~~~g~~  240 (457)
                         |++++.++.+.+| +|+++|+++++ +++++|++. +++||||.+.|.+   +|+++| ++||+++|+|++|+....
T Consensus       154 ---g~~~~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De~y~~~~~  229 (427)
T 3ppl_A          154 ---GFEMISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDNAYAVHTL  229 (427)
T ss_dssp             ---TCEEEEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBS
T ss_pred             ---CCEEEEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEECCCccccc
Confidence               9999999998776 99999999995 678888755 8899999999966   888888 999999999999985211


Q ss_pred             ------cccC-------CCCcccEEEeccccccC-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHH
Q 040741          241 ------PVDV-------EKWNVSLMSLSGHKIYG-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS  306 (457)
Q Consensus       241 ------~~~~-------~~~~~Di~~~s~~K~~g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~  306 (457)
                            +.++       ...+.++++.|+||.++ +.++|+++++++....+......       .....+.....++..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~-------~~~~~~~~~q~~~~~  302 (427)
T 3ppl_A          230 TDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGI-------RGIGPNKVNQLAHAR  302 (427)
T ss_dssp             SSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHHH
T ss_pred             CCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhc-------ccCCCCHHHHHHHHH
Confidence                  1111       13356799999999633 34589999987655555433221       112344444444444


Q ss_pred             HHHH---HHHhhHHHHHHHHHHHHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc
Q 040741          307 ACEI---AKKEMDYDHKRITALHDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG  378 (457)
Q Consensus       307 al~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g  378 (457)
                      +++.   ....+.+..+.++++.+.+.+.|.+.+   +++.+..+. .  +.++.+.++..+...+...+  +||.+.+|
T Consensus       303 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~-~--g~~~~~~~~~~~~~~~~~~l~~~gv~v~~~  379 (427)
T 3ppl_A          303 YFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPA-G--GYFISLDVVPGTASRVAELAKEAGIALTGA  379 (427)
T ss_dssp             HHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCS-B--SSCEEEECSTTCHHHHHHHHHHTTEECCCT
T ss_pred             HHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCC-c--cEEEEEECCcchHHHHHHHHHHCCCEEecC
Confidence            4432   233466666777777777766665422   345554432 2  45556666644456666655  69999986


Q ss_pred             CccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          379 SACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       379 ~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +.|.+.             ......+++||+++.. ++++|++++++|.++++++.
T Consensus       380 g~~~~~-------------~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~~  421 (427)
T 3ppl_A          380 GSSYPL-------------RQDPENKNLRLAPSLP-PVEELEVAMDGVATCVLLAA  421 (427)
T ss_dssp             TTTSGG-------------GCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCC-------------CCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            554321             0112348999999765 89999999999999998764

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.96  E-value=1.4e-27  Score=236.45  Aligned_cols=303  Identities=14%  Similarity=0.146  Sum_probs=212.8

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~  172 (457)
                      .++....+...++++.+++++|.+  ++++++||++|+.++++++.    ++|++|+++.+.|.++...+.. ++..|++
T Consensus        52 ~y~~~~~~~~~~l~~~la~~~g~~--~~i~~~sG~~ai~~~~~~~~----~~gd~vl~~~~~y~~~~~~~~~~~~~~g~~  125 (389)
T 3acz_A           52 IYSRLGNPTVEQFEEMVCSIEGAA--GSAAFGSGMGAISSSTLAFL----QKGDHLIAGDTLYGCTVSLFTHWLPRFGIE  125 (389)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHTTTC----CTTCEEEEESSCCHHHHHHHHHHHHHTTCE
T ss_pred             ccCCCCChHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHHcCCE
Confidence            334434478889999999999986  47788889999999999887    8999999999999998777543 4566999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++..     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.....+ ..++|++
T Consensus       126 ~~~v~~~-----d~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~~~~-~~~~di~  199 (389)
T 3acz_A          126 VDLIDTS-----DVEKVKAAWKPNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFLKPL-ELGADIA  199 (389)
T ss_dssp             EEEECTT-----CHHHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTCCGG-GTTCSEE
T ss_pred             EEEECCC-----CHHHHHHhcCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccccCcc-ccCCeEE
Confidence            9999874     899999999999999999999999999999999999999999999999999876532112 2578999


Q ss_pred             EeccccccC-CCC--ceEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          253 SLSGHKIYG-PKG--VGALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       253 ~~s~~K~~g-~~G--~G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      +.|++|++| +.+  +|++++++ +..+++.+....+       .++.++.....+..+++    .+..+.++..++++.
T Consensus       200 ~~S~sK~~~~~~~~~~G~v~~~~~~~~~~l~~~~~~~-------g~~~~~~~~~~~~~~l~----~l~~r~~~~~~~~~~  268 (389)
T 3acz_A          200 LHSVSKYINGHGDVIGGVSSAKTAEDIATIKFYRKDA-------GSLMAPMDAFLCARGMK----TLPIRMQIHMENGLK  268 (389)
T ss_dssp             EEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHH
T ss_pred             EECChhhccCCCCceeEEEEECcHHHHHHHHHHHHhc-------CCCCCHHHHHHHHcCcc----HHHHHHHHHHHHHHH
Confidence            999999655 544  49999987 6655555443211       12344433333333332    345556677778888


Q ss_pred             HHHHHhhcCCCeEEe-CCC-------------CCcccceEEEEEccccchHHHhcc--cCeEecc---c------CccCC
Q 040741          329 LLNGIKEKLDGVVVN-GSM-------------ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSS---G------SACTS  383 (457)
Q Consensus       329 l~~~l~~~~~~~~~~-~~~-------------~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~---g------~~~~~  383 (457)
                      +.+.|++ .+.+.-+ -+.             ....++++.+.+++  .++....+  .++.+..   |      ..|.+
T Consensus       269 l~~~l~~-~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~--~~~~~~~l~~~~i~~~~~s~G~~~sl~~~~~~  345 (389)
T 3acz_A          269 VAKFLEQ-HEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS--FEAAKKLMEHLKVCTLAVSLGCVDTLIEHPAS  345 (389)
T ss_dssp             HHHHHHH-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS--HHHHHHHHTTCSSSEEBSCCCCSSCEEECTTT
T ss_pred             HHHHHHc-CCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC--HHHHHHHHHhCCCcEECcCCCCcccEeeCCcc
Confidence            8888877 5544322 110             01236677777764  33333333  3554444   5      55544


Q ss_pred             CCC--ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          384 ASL--EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       384 ~~~--~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ...  .+..++...|+++    +.|||+++..    +++.+++.|++++
T Consensus       346 ~~~~~~~~~~~~~~g~~~----~~iRlsvg~~----~~~~li~~l~~al  386 (389)
T 3acz_A          346 MTHAAVPENIMRKQGITP----ELVRISVGIE----NVDDIIADLKQAL  386 (389)
T ss_dssp             TTTSSSCHHHHHHHTCCT----TEEEEECCSS----CHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHhcCCCc----CeEEEEeccC----CHHHHHHHHHHHH
Confidence            322  2455677778764    8999999985    4444555555544

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.96  E-value=7.4e-28  Score=239.62  Aligned_cols=340  Identities=18%  Similarity=0.163  Sum_probs=238.1

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHH-HHHHHHHHHhCCCCCcEEEeCChHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVE-TARSQIADLIGASPKEIIFTSGATESNNV  133 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~-~~~~~la~~~g~~~~~i~~t~g~T~a~~~  133 (457)
                      +++.|.. +.+++++++.+++.+.+.+.  .++|.+. +..|....+..+ .+++++++++|+++++ +++++||+|+.+
T Consensus        24 ~~i~~~~-~~~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~~-i~~~sGt~a~~~  100 (407)
T 2dkj_A           24 EGLELIA-SENFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWAN-VQPHSGSQANMA  100 (407)
T ss_dssp             TSEECCT-TCCCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEE-CCCSSHHHHHHH
T ss_pred             cceeecc-CCCCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcce-EEecchHHHHHH
Confidence            4454443 34456999999999988642  2333321 111222222333 3567999999997643 455557789999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchH---HHHHHHHhcCc--EEEEEeCC-CCCCCCHHHHHHhcCC-CceEEEEeccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVL---DSCRHLQQEGF--EITYLPVG-ADGIVNLDELRAAIRP-DTGLISVMAVN  206 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~---~~~~~~~~~G~--~v~~v~~~-~~~~~d~~~le~~i~~-~t~li~i~~~~  206 (457)
                      +++++.    ++|++|+++.++|+++.   .+++..   |.  .++.++++ .++.+|++++++++++ ++++|+++.++
T Consensus       101 ~~~~~~----~~gd~Vl~~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~p~  173 (407)
T 2dkj_A          101 VYMALM----EPGDTLMGMDLAAGGHLTHGSRVNFS---GKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASA  173 (407)
T ss_dssp             HHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHH---HHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEECCSS
T ss_pred             HHHHhc----CCCCEEEEecccccCccchHHHHHhc---CceEEEEecCCCcccCccCHHHHHHHHhhcCCeEEEEeccc
Confidence            999986    89999999999998884   333333   54  44555544 3678999999999974 88999887777


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC---CcccEEEecccc-ccCCCCceEEEEe-cCCCcccccc
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK---WNVSLMSLSGHK-IYGPKGVGALYMR-RRPRIRVEPL  281 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~---~~~Di~~~s~~K-~~g~~G~G~l~~~-~~~~~~~~~~  281 (457)
                      |+  ...|+++|.++|++||+++|+|++|+.|....+...   ...|++++|+|| +.|+.| |+++++ ++..+++.+.
T Consensus       174 ~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~~~l~~~  250 (407)
T 2dkj_A          174 YP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELGKRIDKL  250 (407)
T ss_dssp             CC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHHHHHHHH
T ss_pred             cC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHHHHHHhh
Confidence            75  788999999999999999999999986433222110   137999999999 456775 999998 5665555544


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ...+      ..++++...+.++.++++... .++++..++.+++++++.+.|++ + ++.+..++.  .+.++.+.++.
T Consensus       251 ~~~~------~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~~~~~~--~~~~~~~~~~~  320 (407)
T 2dkj_A          251 IFPG------IQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELAR-R-GYRIVTGGT--DNHLFLVDLRP  320 (407)
T ss_dssp             HTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-T-TCEEGGGSC--SSSEEEEECGG
T ss_pred             hccc------ccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh-C-CceeecCCC--CceEEEEECcc
Confidence            3222      234667766767777887764 46789999999999999999999 6 788775321  25556666653


Q ss_pred             --ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHH
Q 040741          361 --VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       361 --~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~  432 (457)
                        .+...+...|  +||.+.+|..+..             .......+.+||+++.+    ++++|+++++++|++++++
T Consensus       321 ~~~~~~~~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~  387 (407)
T 2dkj_A          321 KGLTGKEAEERLDAVGITVNKNAIPFD-------------PKPPRVTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE  387 (407)
T ss_dssp             GTCCHHHHHHHHHHTTEECEECCCTTC-------------SSCTTTCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHcCceecCCcCccc-------------cccccCCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence              2455666666  6999888763210             00011237899999753    6899999999999999987

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.95  E-value=3.2e-26  Score=229.40  Aligned_cols=345  Identities=16%  Similarity=0.139  Sum_probs=232.7

Q ss_pred             ecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           61 LDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        61 l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      |..+.+. +.|+++.+++.+.+....         |+. ..+...++++.+++++|.+  ++++|+|||+|++++++++.
T Consensus        21 l~~~~p~~~~p~~~~~a~~~~~~~~~---------y~~-~~~~~~~l~~~la~~~~~~--~v~~~~ggt~al~~~l~~l~   88 (424)
T 2po3_A           21 LLVGRPNRIDRARLYERLDRALDSQW---------LSN-GGPLVREFEERVAGLAGVR--HAVATCNATAGLQLLAHAAG   88 (424)
T ss_dssp             EETTCCCCCCHHHHHHHHHHHHHHTC---------CSS-SCHHHHHHHHHHHHHHTSS--EEEEESCHHHHHHHHHHHHT
T ss_pred             ccccCCCCCChHHHHHHHHHHHhcCC---------ccc-CCHHHHHHHHHHHHHhCCC--eEEEeCCHHHHHHHHHHHcC
Confidence            4443444 346789999988876421         111 0256789999999999974  69999999999999999874


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEI  218 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i  218 (457)
                           +|++|+++.++|+++..+++..   |++++.++++. ++.+|++++++++++++++|++++   ++|...++++|
T Consensus        89 -----~gd~Vlv~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~v~~~~---~tG~~~~l~~i  157 (424)
T 2po3_A           89 -----LTGEVIMPSMTFAATPHALRWI---GLTPVFADIDPDTGNLDPDQVAAAVTPRTSAVVGVH---LWGRPCAADQL  157 (424)
T ss_dssp             -----CCSEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTSSBCHHHHGGGCCTTEEEEEEEC---GGGCCCCHHHH
T ss_pred             -----CCCEEEECCCccHHHHHHHHHc---CCEEEEEecCCCcCCcCHHHHHHhhCcCCcEEEEEC---CCCCcCCHHHH
Confidence                 4799999999999998877655   99999999885 677999999999998999888854   79999999999


Q ss_pred             HHHHHhcCCcEEEehhhhcCCCcc--cCCCCcccEEEeccc--cccCCCCceEEEEe-cCCCccccccccCCccccc-c-
Q 040741          219 GQICKEFKIPFHTDAAQALGKIPV--DVEKWNVSLMSLSGH--KIYGPKGVGALYMR-RRPRIRVEPLINGGGQERG-I-  291 (457)
Q Consensus       219 ~~l~~~~~v~li~D~a~~~g~~~~--~~~~~~~Di~~~s~~--K~~g~~G~G~l~~~-~~~~~~~~~~~~~~~~~~~-~-  291 (457)
                      .++|+++|+++|+|++|+.|...-  .+..+ .|++++|++  |.+++..+|+++.+ ++..+++.+....+..... . 
T Consensus       158 ~~la~~~~~~li~Dea~~~g~~~~~~~~~~~-~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~  236 (424)
T 2po3_A          158 RKVADEHGLRLYFDAAHALGCAVDGRPAGSL-GDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGSP  236 (424)
T ss_dssp             HHHHHHTTCEEEEECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCCT
T ss_pred             HHHHHHcCCEEEEECccccCCeECCeecccc-cCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence            999999999999999999765421  11111 489999988  76665557999887 4555555544332211000 0 


Q ss_pred             ccCCC-ChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc--cceEEEEEc----cccch
Q 040741          292 RSGTL-PTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY--IGNLNLSFA----YVEGE  364 (457)
Q Consensus       292 ~~~t~-~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~  364 (457)
                      ..+.. ....+.+. .++.. .+.+++..++.+++.+++.+.|.+ ++++.+..++....  ..++.+.++    +.+..
T Consensus       237 ~~g~~~~~~~~~aa-~~l~~-~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  313 (424)
T 2po3_A          237 AGGTNAKMSEAAAA-MGLTS-LDAFPEVIDRNRRNHAAYREHLAD-LPGVLVADHDRHGLNNHQYVIVEIDEATTGIHRD  313 (424)
T ss_dssp             TCCCBCCCCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHTCS-CTTEEECCGGGGSCCCCCCEEEEECHHHHSSCHH
T ss_pred             ccCcCCCcCHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhcc-CCCccccCCCCCCccccEEEEEEECCccchhhHH
Confidence            00110 11112111 12221 234677888888999999999988 78888876332211  234445554    34566


Q ss_pred             HHHhcc--cCeEecccCccCCCC-CChhHHHHHcC---CC--ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          365 SLLMGL--KEVAVSSGSACTSAS-LEPSYVLRALG---VD--EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       365 ~~~~~l--~~i~~~~g~~~~~~~-~~~~~~l~~~g---~~--~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                      ++...|  +||.+.+  .|.+.. ..+.  +..+|   ..  .....+.||+++...++++|+++++++|++++++.++.
T Consensus       314 ~l~~~L~~~gI~v~~--~~~~~~~~~~~--~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~~~  389 (424)
T 2po3_A          314 LVMEVLKAEGVHTRA--YFSPGCHELEP--YRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCATRGREL  389 (424)
T ss_dssp             HHHHHHHHTTEECBC--TTCSCGGGSTT--TTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCceec--ccCCccccchh--hhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhHHH
Confidence            676666  6888865  232110 0000  00000   00  00112458999889999999999999999999876544

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.95  E-value=1.4e-27  Score=239.03  Aligned_cols=341  Identities=13%  Similarity=0.082  Sum_probs=230.6

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      +..+.|..+.+.    ++++.+.+++.+.....  .+   ....+|.......++++.++++++++++++++|+|+++++
T Consensus        32 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~--~~---~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~i~~t~G~~~al  106 (422)
T 3d6k_A           32 NLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTK--DG---VDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNI  106 (422)
T ss_dssp             TCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCT--TC---CBTTSSCCSSCCHHHHHHHHHHHTCCGGGEEECSSCHHHH
T ss_pred             CCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhc--cc---hhhhCCCCCCCCHHHHHHHHHHhCCChhHEEEecchHHHH
Confidence            345677666554    44556666655432100  00   0011122123467899999999999989999999999997


Q ss_pred             --HHHHHHhhhhhcCC------------CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCC-C
Q 040741          132 --NVSIKGVMHFYKDK------------KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRP-D  196 (457)
Q Consensus       132 --~~al~~~~~~~~~~------------g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~  196 (457)
                        .+++.++.    .+            +++|++..+.|..+...++..   |.+++.++.+.+| +|++++++++++ +
T Consensus       107 ~l~~~~~~l~----~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~---g~~~~~v~~~~~g-~d~~~l~~~l~~~~  178 (422)
T 3d6k_A          107 MFDLISWSYT----WGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHF---GFEMINVPMTDEG-PDMGVVRELVKDPQ  178 (422)
T ss_dssp             HHHHHHHHHH----HCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHH---TCEEEEEEEETTE-ECHHHHHHHHTSTT
T ss_pred             HHHHHHHHhc----CcccccccccccCCCCEEEEeCCccHHHHHHHHHc---CCEEEecCCCCCC-CCHHHHHHHHhcCC
Confidence              66667776    33            457999999999998887776   9999999987665 899999999986 7


Q ss_pred             ceEEE-EeccccccccccChH---HHHHHHH-hcCCcEEEehhhhc---CCC--c-ccC-------CCCcccEEEecccc
Q 040741          197 TGLIS-VMAVNNEIGVIQPME---EIGQICK-EFKIPFHTDAAQAL---GKI--P-VDV-------EKWNVSLMSLSGHK  258 (457)
Q Consensus       197 t~li~-i~~~~~~~G~~~~l~---~i~~l~~-~~~v~li~D~a~~~---g~~--~-~~~-------~~~~~Di~~~s~~K  258 (457)
                      +++|+ +++++||||.+.|.+   +|.++|+ +||+++|+|++|+.   ...  + ..+       ...+.++++.|++|
T Consensus       179 ~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK  258 (422)
T 3d6k_A          179 VKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSK  258 (422)
T ss_dssp             EEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTT
T ss_pred             CeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhh
Confidence            88877 789999999999966   7888888 99999999999973   111  1 111       23356789999999


Q ss_pred             ccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          259 IYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI---AKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       259 ~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~---~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      ..+| -++|+++++++.++++......       ...+.+.....++..+++.   ..+.+++..+.++++++++.+.|.
T Consensus       259 ~~~~GlriG~~~~~~~l~~~l~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~  331 (422)
T 3d6k_A          259 ITHAGSGVSFFASSKENIEWYASHANV-------RGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILD  331 (422)
T ss_dssp             TSCTTSSCEEEECCHHHHHHHHHHHHH-------HCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCcccceEEEEeCHHHHHHHHHHHHh-------hcCCCCHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6333 2389999987665555433221       1124566666666566643   123466667777777777777765


Q ss_pred             hc---CCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEeccc-CccCCCCCChhHHHHHcCCCccCCCCeEEE
Q 040741          335 EK---LDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSG-SACTSASLEPSYVLRALGVDEDMAHTSIRF  408 (457)
Q Consensus       335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g-~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi  408 (457)
                      +.   ++++.+..+ ..  +.++.+.++..+...+...+  +||.+.+| ..|...              .....++|||
T Consensus       332 ~~l~~~~~~~~~~p-~~--g~~~~~~~~~~~~~~~~~~l~~~gV~v~~~g~~f~~~--------------~~~~~~~iRi  394 (422)
T 3d6k_A          332 SRLSEYGVAKWTSP-TG--GYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLH--------------NDPNNENIRL  394 (422)
T ss_dssp             HHHGGGTCEEECCC-SB--SSCEEEEESTTCHHHHHHHHHHTTEECCCTTTTSGGG--------------CCTTSCEEEE
T ss_pred             HhcCcCCceEEeCC-Cc--ceEEEEECCCCCHHHHHHHHHHCCeEEEcCccccCCC--------------CCCCCCeEEE
Confidence            42   233565443 22  44556666543344555555  69999984 434210              0012379999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          409 GIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       409 ~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +++. ++++++++++++|+++++++.
T Consensus       395 s~~~-~~~e~i~~~~~~l~~~l~~~~  419 (422)
T 3d6k_A          395 APSL-PPVAELEVAMDGFATCVLMAA  419 (422)
T ss_dssp             CCSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             ecCC-CCHHHHHHHHHHHHHHHHHHH
Confidence            9998 789999999999999988763

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=99.95  E-value=3.6e-27  Score=234.65  Aligned_cols=329  Identities=13%  Similarity=0.096  Sum_probs=225.1

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++.      ..+|++.+++.+.+......+..      + ..+...++++++++++|.+  +++||+|||+
T Consensus        37 ~g~~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~------~-~~~~~~~l~~~la~~~~~~--~v~~~~gg~~  107 (406)
T 4adb_A           37 QGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG------Y-TNEPVLRLAKKLIDATFAD--RVFFCNSGAE  107 (406)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT------S-CCHHHHHHHHHHHHHSSCS--EEEEESSHHH
T ss_pred             CCCEEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCC------c-CCHHHHHHHHHHHhhCCCC--eEEEeCcHHH
Confidence            445688887763      23899999999998764322211      1 1256788999999999865  6999999999


Q ss_pred             HHHHHHHHhhhhhc---CCC-CEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCCCCCCCHHHHHHhcCC
Q 040741          130 SNNVSIKGVMHFYK---DKK-RHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGADGIVNLDELRAAIRP  195 (457)
Q Consensus       130 a~~~al~~~~~~~~---~~g-~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~~~~~d~~~le~~i~~  195 (457)
                      |++++++.+..+..   +++ ++|++..+.|......+..+..          .+.++..++.+     |+++|++++++
T Consensus       108 a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~  182 (406)
T 4adb_A          108 ANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDD  182 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCST
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcC
Confidence            99999998763110   144 7888777776666544443311          01244445433     89999999999


Q ss_pred             CceEEEEecccccccccc-----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC-CC
Q 040741          196 DTGLISVMAVNNEIGVIQ-----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP-KG  264 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~~-----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~-~G  264 (457)
                      ++++|+++ ++|++|.+.     ++++|.++|++||+++|+|++|+ ++..  ++  +......|+++  ++|.+|+ .+
T Consensus       183 ~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t--~sK~~~~G~r  259 (406)
T 4adb_A          183 STCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLLT--TAKALGGGFP  259 (406)
T ss_dssp             TEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEE--ECGGGGTTSC
T ss_pred             CeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhcCCCCCEEE--echhhcCCCC
Confidence            99999999 788888654     48999999999999999999996 3221  11  11123467774  5797762 13


Q ss_pred             ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC-eEEe
Q 040741          265 VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG-VVVN  343 (457)
Q Consensus       265 ~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~  343 (457)
                      +|+++++++..+++.+...+..       .+.++..+.++.++++.+..  ++..++.+++++++.+.|++ +.. +.+.
T Consensus       260 ~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~  329 (406)
T 4adb_A          260 VGALLATEECARVMTVGTHGTT-------YGGNPLASAVAGKVLELINT--PEMLNGVKQRHDWFVERLNT-INHRYGLF  329 (406)
T ss_dssp             CEEEEECHHHHHTCCTTSSCCS-------STTCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHH-HHHHHCCE
T ss_pred             eEEEEEcHHHHhhhccCCcCCC-------CCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHHhCCCc
Confidence            8999998876666655433221       25566677777677766533  67777888888888888776 211 1111


Q ss_pred             CCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          344 GSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .+ ....+.++.+.+...   +..++...+  +||.+.++.                       .+++||+++..++++|
T Consensus       330 ~~-~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~e~  385 (406)
T 4adb_A          330 SE-VRGLGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAG-----------------------GNVVRFAPALNVSEEE  385 (406)
T ss_dssp             EE-EEEETTEEEEEECTTTTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHHH
T ss_pred             eE-EEEEEEEEEEEEeCCcHHHHHHHHHHHHHCCcEEeecC-----------------------CCeEEEECCCCCCHHH
Confidence            10 011245556666542   355666666  688877642                       2799999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 040741          419 VDRAIELTVKQVEKLRE  435 (457)
Q Consensus       419 id~~~~~l~~~~~~~~~  435 (457)
                      +++++++|+++++++++
T Consensus       386 i~~~~~~l~~~l~~~~~  402 (406)
T 4adb_A          386 VTTGLDRFAAACEHFVS  402 (406)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999988764

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.95  E-value=4.3e-28  Score=242.29  Aligned_cols=339  Identities=16%  Similarity=0.192  Sum_probs=220.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~  140 (457)
                      +.+.++.+|++.+++.+.+...+  ++|++..+............+++++++++|++++++++ ++||+|+.++++++. 
T Consensus        36 ~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~v~~-~sGs~a~~~a~~~~~-  113 (420)
T 3gbx_A           36 IASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL-  113 (420)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred             eccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHhCCCCceeEe-cCcHHHHHHHHHHhc-
Confidence            34455689999999999886555  55554222211122234555778999999997755545 556999999999987 


Q ss_pred             hhcCCCCEEEEcCCCCcchHHHHHHH--HhcCcEEEEEeCCCCCCCCHHHHHHhcCC-CceEEEEeccccccccccChHH
Q 040741          141 FYKDKKRHVITTQTEHKCVLDSCRHL--QQEGFEITYLPVGADGIVNLDELRAAIRP-DTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       141 ~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G~~v~~v~~~~~~~~d~~~le~~i~~-~t~li~i~~~~~~~G~~~~l~~  217 (457)
                         ++|++|++..++|.++.......  ...+..+..++.+.++.+|++++++++++ ++++|+++++++  |...|+++
T Consensus       114 ---~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l~~  188 (420)
T 3gbx_A          114 ---QPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAY--SGVVDWAK  188 (420)
T ss_dssp             ---CTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHCCSEEEECCTTC--CSCCCHHH
T ss_pred             ---CCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcCCeEEEEecCcc--CCccCHHH
Confidence               89999999999998854221111  11244556667777788999999999986 589998887776  45889999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEecccccc-CCCCceEEEEec---CCCccccccccCCccc
Q 040741          218 IGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRR---RPRIRVEPLINGGGQE  288 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~---~~~~~~~~~~~~~~~~  288 (457)
                      |.++|++||+++|+|++|+.|..     +....  .+|++++|+||.+ |+.| |+++.++   .....+......+   
T Consensus       189 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~~~~~~~~~~~~---  262 (420)
T 3gbx_A          189 MREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP--HAHVVTTTTHKTLAGPRG-GLILAKGGDEELYKKLNSAVFPS---  262 (420)
T ss_dssp             HHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTT--TSSEEEEESSGGGCSCSC-EEEEESSCCHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCEEEEECCcchhceecccCCcccc--cCCEEEeecccCCCCCCc-eEEEEcCCcHHHHHHhhhhcCCC---
Confidence            99999999999999999865432     22222  3899999999966 6776 9999886   3333333322211   


Q ss_pred             cccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--ccchH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--VEGES  365 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  365 (457)
                         ..++++...+.++..++... .++++++.++..++++++.+.|.+  .++.+..+..  ...++.+.+..  .+...
T Consensus       263 ---~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~  335 (420)
T 3gbx_A          263 ---AQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLN--RGYKVVSGGT--ENHLFLLDLVDKNLTGKE  335 (420)
T ss_dssp             -----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHH
T ss_pred             ---CCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--cCCeeccCCC--CCeEEEEEcCCCCCCHHH
Confidence               12456666666666566544 345788899999999999999998  5777765311  13444445432  34455


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~~  434 (457)
                      +...|  +||.+.+......             .........+||+++..    .+++++++++++|++++++..
T Consensus       336 ~~~~l~~~gi~v~~~~~~~~-------------~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~~  397 (420)
T 3gbx_A          336 ADAALGRANITVNKNSVPND-------------PKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNIN  397 (420)
T ss_dssp             HHHHHHHTTEECEEECCTTC-------------SSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHCCcEeccccCCCC-------------ccccCCCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCcc
Confidence            55555  5888877321100             00112235699998654    458999999999999987643

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.95  E-value=1.8e-27  Score=237.90  Aligned_cols=321  Identities=13%  Similarity=0.054  Sum_probs=219.6

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-CCC---cEEEeCChHHHHHHHH
Q 040741           62 DMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-SPK---EIIFTSGATESNNVSI  135 (457)
Q Consensus        62 ~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-~~~---~i~~t~g~T~a~~~al  135 (457)
                      |..+..++++.+.+++.+.... ..+++.          .....++++.+++++ +. .++   ++++|+|||+|+.+++
T Consensus        50 ~~~~~~~~~~~v~~a~~~~~~~~~~~y~~----------~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~  119 (418)
T 3rq1_A           50 DEEGNLVFLKTVKEEYLSLSDSEHVGYAP----------IAGIPDFLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLI  119 (418)
T ss_dssp             CTTSCBCCCHHHHHHHHTCCHHHHHSCCC----------TTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHhcccccCCCCC----------CCChHHHHHHHHHHHhcccCccccccEEECCchHHHHHHHH
Confidence            3334557889998888765432 111111          112445666666655 11 244   7999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCC----Cce-EEEEecc-ccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRP----DTG-LISVMAV-NNE  208 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~----~t~-li~i~~~-~~~  208 (457)
                      +++.    ++||+|+++.+.|..+...++..   |.+++.++.+ .++.+|++++++++++    +++ +++++++ +||
T Consensus       120 ~~l~----~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NP  192 (418)
T 3rq1_A          120 HNYT----EPGDEVLTADWYWGAYRVICSDT---GRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNP  192 (418)
T ss_dssp             HHHS----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTT
T ss_pred             HHhc----CCCCEEEECCCCchhHHHHHHHc---CCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCC
Confidence            9988    89999999999999998877665   9999999985 5568999999999975    555 8888889 999


Q ss_pred             cccccChH---HHHHHHH------hcCCcEEEehhhhcCCCc------c--cCCCCccc---EEEeccccccCCCC--ce
Q 040741          209 IGVIQPME---EIGQICK------EFKIPFHTDAAQALGKIP------V--DVEKWNVS---LMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       209 ~G~~~~l~---~i~~l~~------~~~v~li~D~a~~~g~~~------~--~~~~~~~D---i~~~s~~K~~g~~G--~G  266 (457)
                      +|.+.|.+   +|+++|+      +||+++|+|++|......      +  .......|   +++.|++|.+|.+|  +|
T Consensus       193 tG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G  272 (418)
T 3rq1_A          193 TGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQRVG  272 (418)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSSCCE
T ss_pred             CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCCcce
Confidence            99999955   4556666      899999999998532211      0  11111223   77889999877555  89


Q ss_pred             EEEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHHhhcC
Q 040741          267 ALYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI------AKKEMDYDHKRITALHDRLLNGIKEKL  337 (457)
Q Consensus       267 ~l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~------~~~~~~~~~~~~~~~~~~l~~~l~~~~  337 (457)
                      ++++   +++..+++........   ......++.....++..+++.      ..+.+.+..++++++++++.+.|.+ +
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~  348 (418)
T 3rq1_A          273 AMIGISDDEEIADEFFEVNKSTS---RATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQ-V  348 (418)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHH---HHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHH---hhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence            9998   6655555543321100   001124555666655555532      2233556778888999999999988 4


Q ss_pred             CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          338 DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                       ++.+..+..   +.++  .+...+..++...|  +||.+.+|.                        +++||+++ .++
T Consensus       349 -g~~~~~~~~---~~~~--~~~~~~~~~~~~~l~~~gi~v~~g~------------------------~~iRis~~-~~~  397 (418)
T 3rq1_A          349 -GLPMLPYRG---GFFI--TIPTDSANAICEELKKEHIYVIALA------------------------NGIRIAAC-GIP  397 (418)
T ss_dssp             -TCCCCCCCS---SSEE--EEECTTHHHHHHHHHHTTEECEECS------------------------SEEEEEGG-GSC
T ss_pred             -CCCCCCCCc---eEEE--EcCCCCHHHHHHHHHhCCEEEecCC------------------------CCeEEEEe-cCC
Confidence             666554321   2222  22323556666666  689888763                        68999987 468


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~~  434 (457)
                      ++++++++++|++++++++
T Consensus       398 ~~~i~~~~~~l~~~l~~~~  416 (418)
T 3rq1_A          398 KCQMTGLAEKIYNAMKSLG  416 (418)
T ss_dssp             HHHHTTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            9999999999999998764

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=99.95  E-value=3.7e-26  Score=226.61  Aligned_cols=318  Identities=13%  Similarity=0.115  Sum_probs=223.7

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++      ++.++++.+++.+.+... .+..+ .  +   ..+...++++.+++++|.+++++++++|||+
T Consensus        43 ~g~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~-~--~---~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~  115 (395)
T 1vef_A           43 EGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQ-T--L---PTPMRGEFYRTLTAILPPELNRVFPVNSGTE  115 (395)
T ss_dssp             TSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCT-T--S---CCHHHHHHHHHHHHTSCTTEEEEEEESSHHH
T ss_pred             CCCEEEEccCccccccCCCCCHHHHHHHHHHHHhC-CCCcc-c--c---CCHHHHHHHHHHHHhcCCCcCEEEEcCcHHH
Confidence            44568888654      358899999999998753 22111 1  1   2257889999999999887778999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHHHhcCcE------------EEEEeCCCCCCCCHHHHHHhcCCC
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQQEGFE------------ITYLPVGADGIVNLDELRAAIRPD  196 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~~~G~~------------v~~v~~~~~~~~d~~~le~~i~~~  196 (457)
                      |+.++++++..+  .++++|++..+.|+ ....++...   |.+            +..++.     .|+++++++++++
T Consensus       116 a~~~al~~~~~~--~~~~~vi~~~~~y~~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~~  185 (395)
T 1vef_A          116 ANEAALKFARAH--TGRKKFVAAMRGFSGRTMGSLSVT---WEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDEE  185 (395)
T ss_dssp             HHHHHHHHHHHH--HSCCEEEEETTCCCCSSHHHHHTC---CCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCTT
T ss_pred             HHHHHHHHHHHH--hCCCeEEEEcCCcCCCchhhhhhc---CCcccccccCCCCCCeeEeCC-----CcHHHHHHHhccC
Confidence            999999876422  35677777776654 455454433   433            333332     3899999999999


Q ss_pred             ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccccC-CCCce
Q 040741          197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKIYG-PKGVG  266 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~~g-~~G~G  266 (457)
                      +++|++++++|++|.+.|    +++|.++|++||+++|+|++|+ ++..    +++.....+|++  |++|.++ +.++|
T Consensus       186 ~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G  263 (395)
T 1vef_A          186 TAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLG  263 (395)
T ss_dssp             EEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCE
T ss_pred             EEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcCCCCCEE--EEcccccCCCceE
Confidence            999999999999999988    9999999999999999999998 3321    112222346876  6689655 44689


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC--eEEeC
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG--VVVNG  344 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~  344 (457)
                      +++++++..+++.....       ....+.+...+.++.++++....  +...++.+++++++.+.|++ ++.  +... 
T Consensus       264 ~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~a~~~al~~~~~--~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~-  332 (395)
T 1vef_A          264 VAVMREEVARSMPKGGH-------GTTFGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREV-  332 (395)
T ss_dssp             EEEEEHHHHHTSCTTSS-------CCSSTTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE-
T ss_pred             EEEehHHHHhhhccCCc-------CCCcCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHH-hhcCceEEE-
Confidence            99999875555543111       11225667777777778876654  45678888999999999988 542  1111 


Q ss_pred             CCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          345 SMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                         ...+.++.+.++. +..++...|   +||.+.++.                       .+++||+++..++++|+++
T Consensus       333 ---~~~g~~~~~~~~~-~~~~l~~~l~~~~gi~v~~~~-----------------------~~~iRi~~~~~~~~~~i~~  385 (395)
T 1vef_A          333 ---RGMGLMVGLELKE-KAAPYIARLEKEHRVLALQAG-----------------------PTVIRFLPPLVIEKEDLER  385 (395)
T ss_dssp             ---EEETTEEEEEESS-CSHHHHHHHHHHHCEECEESS-----------------------TTEEEECCCTTCCHHHHHH
T ss_pred             ---EEEEEEEEEEEcC-hHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEeCCCCCCHHHHHH
Confidence               1124555666653 245565554   478776531                       2799999998899999999


Q ss_pred             HHHHHHHHH
Q 040741          422 AIELTVKQV  430 (457)
Q Consensus       422 ~~~~l~~~~  430 (457)
                      ++++|++++
T Consensus       386 ~~~~l~~~l  394 (395)
T 1vef_A          386 VVEAVRAVL  394 (395)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998875

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.95  E-value=1.4e-27  Score=240.88  Aligned_cols=301  Identities=15%  Similarity=0.121  Sum_probs=204.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~  178 (457)
                      .+...++++++++++|.+  ++++++||++|+.+++. +.    ++|++|+++.+.|.++...+.. ++..|.++++++.
T Consensus       132 ~~~~~~l~~~la~~~g~~--~~i~~~sGt~al~~~l~-~~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~v~~  204 (464)
T 1ibj_A          132 NPTRDALESLLAKLDKAD--RAFCFTSGMAALSAVTH-LI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGVVVKRVNT  204 (464)
T ss_dssp             CHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHHHHT-TS----CTTCEEEEESSCCHHHHHHHHHTSGGGTCEEEEECT
T ss_pred             CHHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-Hh----CCCCEEEEECCCchhHHHHHHHHHHHcCCEEEEeCC
Confidence            357888999999999975  58888999999988775 55    7999999999999998766543 3556999999987


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK  258 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K  258 (457)
                      +     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++|+.|...... .++.|+++.|+||
T Consensus       205 ~-----d~~~l~~~i~~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~~~~-~~~~div~~S~sK  278 (464)
T 1ibj_A          205 T-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLSRPL-ELGADIVMHSATK  278 (464)
T ss_dssp             T-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTCCGG-GTTCSEEEEETTT
T ss_pred             C-----CHHHHHHHhccCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccCChh-hcCCEEEEECCcc
Confidence            5     899999999999999999999999999999999999999999999999999877542122 2578999999999


Q ss_pred             cc-CCCCc--eEEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          259 IY-GPKGV--GALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       259 ~~-g~~G~--G~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      ++ |+.|+  |++++++ +..+++......       ..+..+.....++..+++..    ....++..++...+.+.++
T Consensus       279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~~~~-------~g~~~~~~~~~a~~~al~~~----~~r~~~~~~~~~~l~~~l~  347 (464)
T 1ibj_A          279 FIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGIKTM----ALRIEKQQENARKIAMYLS  347 (464)
T ss_dssp             TTTCSSCCCCEEEEECSHHHHHHHHHHHHH-------TTCBCCHHHHHHHHHHHTTH----HHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCcEEEEEEChHHHHHHHHHHHHh-------cCCCCCHHHHHHHHhchhhH----HHHHHHHHHHHHHHHHHHH
Confidence            55 56564  9999985 444444433211       11233444444443444322    2222223333333333333


Q ss_pred             hc-------------CCCeEEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeEecccC----ccCCCCCC----hhH
Q 040741          335 EK-------------LDGVVVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVAVSSGS----ACTSASLE----PSY  390 (457)
Q Consensus       335 ~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~----~~~~~~~~----~~~  390 (457)
                      +.             +|++.+..+.....++++.+.+.+.+ ...+...|  .+|.++.|.    .|.+....    +..
T Consensus       348 ~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~~~~~~~~~~L~~~gi~v~~G~~~sl~~~p~~~~~~~~~~~  427 (464)
T 1ibj_A          348 SHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFMSHASIPAE  427 (464)
T ss_dssp             TCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTTTTCSCCSS
T ss_pred             hCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCHHHHHHHHHhcCcceEeecCCCCceeeecccccccccCCHH
Confidence            30             34444444333334567777764322 23455555  588888886    44442111    100


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+..+|+.    .+.|||+++.    ||+++++++|++++++
T Consensus       428 ~~~~~g~~----~~~iRlsvg~----edi~~li~~L~~al~~  461 (464)
T 1ibj_A          428 VREARGLT----EDLVRISAGI----EDVDDLISDLDIAFKT  461 (464)
T ss_dssp             SSSSSSCC----TTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             HHHhcCCC----cCeEEEEeCC----CCHHHHHHHHHHHHhh
Confidence            11122322    3799999996    8999999999998763

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=235.09  Aligned_cols=329  Identities=14%  Similarity=0.086  Sum_probs=223.2

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEEeCChHHHHHHHHHHhhhhhcCC
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKEIIFTSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~i~~t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      .|.++++++.+.+....+.. ...|....+..+..+.+.+.+.+.. |.  +++++++|+|+++|+.+++.++.    ++
T Consensus       102 ~P~~~~~~~~~~l~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~----~~  176 (498)
T 3ihj_A          102 FPEDAKKRARRILQACGGNS-LGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILV----SG  176 (498)
T ss_dssp             SCHHHHHHHHHHHHHC-----------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHC----CC
T ss_pred             CCHHHHHHHHHHHHhccCCC-CCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHc----CC
Confidence            47777777777776532100 0011111111233444444444444 34  57789999999999999999888    66


Q ss_pred             C----CEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcCC-----CceEEEEeccccccccccC
Q 040741          146 K----RHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIRP-----DTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       146 g----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G~~~~  214 (457)
                      |    +.|+++.+.|+.+...++..   |++++.++++.  ++.+|+++|++++++     ++++|++++++||||.+++
T Consensus       177 gd~~~d~Vlv~~p~y~~~~~~~~~~---g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s  253 (498)
T 3ihj_A          177 GGKSRTGVMIPIPQYPLYSAVISEL---DAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS  253 (498)
T ss_dssp             CGGGSEEEEEEESCCTHHHHHHHHT---TCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCC
T ss_pred             CCCCCCEEEEeCCCchhHHHHHHHc---CCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCC
Confidence            6    49999999999998887766   99999999874  357899999999976     5899999999999999988


Q ss_pred             ---hHHHHHHHHhcCCcEEEehhhhcCCCc-----ccCCCC----------cc-cEEEecccccc-CCCC--ceEEEE--
Q 040741          215 ---MEEIGQICKEFKIPFHTDAAQALGKIP-----VDVEKW----------NV-SLMSLSGHKIY-GPKG--VGALYM--  270 (457)
Q Consensus       215 ---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~~~~~----------~~-Di~~~s~~K~~-g~~G--~G~l~~--  270 (457)
                         +++|+++|++||+++++|++|+.....     ..+...          +. .+++.|+||.+ |.+|  +|++++  
T Consensus       254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~  333 (498)
T 3ihj_A          254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN  333 (498)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred             HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence               667999999999999999999854321     111110          11 25677999966 5343  799984  


Q ss_pred             -ecCCCccccccccCCccccccccCCCChhHHHHHHHHHH----------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          271 -RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE----------IAKKEMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       271 -~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~----------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                       +++.++.+.....        ...+++.....++..+++          ...++..++.++++++++++.+.|.+ +|+
T Consensus       334 ~~~~l~~~l~~~~~--------~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~-~~g  404 (498)
T 3ihj_A          334 LHPEIKGQLVKLLS--------VRLCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ-VPG  404 (498)
T ss_dssp             CCHHHHHHHHHHHH--------HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT-STT
T ss_pred             CCHHHHHHHHHHHh--------ccCCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCC
Confidence             4444444433221        112556666666655553          22334577888999999999999999 889


Q ss_pred             eEEeCCCCCcccceEEEEEc------------cccchHH--Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCC
Q 040741          340 VVVNGSMERRYIGNLNLSFA------------YVEGESL--LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAH  403 (457)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~------------~~~~~~~--~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~  403 (457)
                      +.+..+..   +.++.+.+.            +.+.+.+  ...|  +||.+.+|..|...                ...
T Consensus       405 ~~~~~p~g---g~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~----------------~~~  465 (498)
T 3ihj_A          405 IHCNPLQG---AMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQR----------------EGT  465 (498)
T ss_dssp             EECCCCCB---SSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCC----------------TTC
T ss_pred             cEecCCCe---EEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCC----------------CCC
Confidence            88765432   222222332            2223332  3333  59999999876531                123


Q ss_pred             CeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          404 TSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       404 ~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +++|+++.  .++++++.++++|+++++++++
T Consensus       466 ~~~Ris~~--~~~e~l~~~i~~L~~~~~~~~~  495 (498)
T 3ihj_A          466 YHFRMTIL--PPVEKLKTVLQKVKDFHINFLE  495 (498)
T ss_dssp             CBEEEECC--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEeC--CCHHHHHHHHHHHHHHHHHHHH
Confidence            69999995  6899999999999999988753

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.95  E-value=1.6e-27  Score=240.00  Aligned_cols=281  Identities=15%  Similarity=0.129  Sum_probs=213.1

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--  178 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--  178 (457)
                      ....++++++++ +|++ +++++++|+|+|+.++++++.    ++|++|++++++|.++..++...   |+++++++.  
T Consensus        57 ~~~~~~~~~la~-~g~~-~~v~~~~G~t~a~~~~~~a~~----~~gd~Vlv~~~~h~s~~~~~~~~---G~~~~~v~~~~  127 (446)
T 2x3l_A           57 EVILKSMKQVEK-HSDY-DGYFLVNGTTSGILSVIQSFS----QKKGDILMARNVHKSVLHALDIS---QQEGHFIETHQ  127 (446)
T ss_dssp             SHHHHHHHHHCS-CTTE-EEEEESSHHHHHHHHHHHTTT----TSSSCEEECTTCCHHHHHHHHHH---TCCEEECEEEE
T ss_pred             hHHHHHHHHHHh-cCCC-ceEEEeCCHHHHHHHHHHHhc----CCCCEEEEecCccHHHHHHHHHc---CCeEEEEeCee
Confidence            467889999999 9987 569999999999999999997    89999999999999999988876   999999988  


Q ss_pred             CCC----CCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcc
Q 040741          179 GAD----GIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNV  249 (457)
Q Consensus       179 ~~~----~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~  249 (457)
                      +.+    +.+|++++   +.+++++|++++ .|++|.+.|+++|.++|++||+++|+|++|+. ..     +.+....++
T Consensus       128 ~~~~~~~~~~d~~~l---~~~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~-~~~f~~~~~~~~~~g~  202 (446)
T 2x3l_A          128 SPLTNHYNKVNLSRL---NNDGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA-HFGLQGFPDSTLNYQA  202 (446)
T ss_dssp             CTTTSSEEEEEC----------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT-TTTSTTSCCCGGGGTC
T ss_pred             ccccCcCCCCCHHHH---cCCCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh-hhccCCCCCChHHcCC
Confidence            544    56788887   567889999999 56699999999999999999999999999986 22     344444578


Q ss_pred             cEEEecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Q 040741          250 SLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHD  327 (457)
Q Consensus       250 Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~~~~~~~~~~~~~  327 (457)
                      |+++.|+|| ++|+.|+|+++++++.++ ..+...+.   ..+..++++...++++.++++.+... .+++.++..++++
T Consensus       203 Di~~~S~~K~l~~~~g~g~l~~~~~~i~-~~~~~~~~---~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~  278 (446)
T 2x3l_A          203 DYVVQSFHKTLPALTMGSVLYIHKNAPY-RENIIEYL---SYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIE  278 (446)
T ss_dssp             SEEEECHHHHSSSCTTCEEEEEETTCTT-HHHHHHHH---HHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CEEEECCccccccccccEEEEEcCCcCC-HHHHHHHH---HHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            999999999 788888999999887654 22222111   11345678888888888788777653 3447777777777


Q ss_pred             HHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEec-ccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVS-SGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~-~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                      ++++.      ++.+.++.+   +..+.+.+++.++.++...|  +||.+. +|.                        +
T Consensus       279 ~l~~~------g~~~~~~~~---~~~l~i~~~~~~~~~l~~~L~~~GI~v~~~g~------------------------~  325 (446)
T 2x3l_A          279 CLENK------GFEMLQVDD---PLKLLIKYEGFTGHDIQNWFMNAHIYLELADD------------------------Y  325 (446)
T ss_dssp             HHHHH------TCEEEECSS---TTEEEEECTTSCHHHHHHHHHHTTEEESEECS------------------------S
T ss_pred             HHHHc------CCEECcCCC---CeEEEEEeCCcCHHHHHHHHHHCCCEEEecCC------------------------C
Confidence            77765      455655332   23455566555666777666  588775 332                        6


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+||+++..++++++ +++++|+++++++
T Consensus       326 ~iRi~~~~~~t~e~i-~l~~aL~~~~~~~  353 (446)
T 2x3l_A          326 QALAILPLWHHDDTY-LFDSLLRKIEDMI  353 (446)
T ss_dssp             CEEEECCCCCTTCCC-CHHHHHHHHHTCC
T ss_pred             EEEEEeecCCCHHHH-HHHHHHHHHHHhh
Confidence            899999998899999 9999999988755

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.95  E-value=1e-26  Score=232.26  Aligned_cols=312  Identities=15%  Similarity=0.162  Sum_probs=213.3

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcE
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFE  172 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~  172 (457)
                      .|++...+...++++++++++|.+.  .+++++|++|+.++++++.    ++||+|+++.+.|.+....+. .+...|++
T Consensus        75 ~y~r~~~p~~~~le~~lA~l~g~~~--~v~~~sG~~Ai~~al~al~----~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~  148 (430)
T 3ri6_A           75 VYSRSSNPTVEDLEQRLKNLTGALG--VLALGSGMAAISTAILTLA----RAGDSVVTTDRLFGHTLSLFQKTLPSFGIE  148 (430)
T ss_dssp             -----CCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHTHHHHTTCE
T ss_pred             cccCCCCHHHHHHHHHHHHHHCCCc--EEEECCHHHHHHHHHHHHh----CCCCEEEEcCCCchhHHHHHHHHHHHcCCE
Confidence            3444445788999999999999865  7788889999999999987    899999999999999888665 45667999


Q ss_pred             EEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEE
Q 040741          173 ITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLM  252 (457)
Q Consensus       173 v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~  252 (457)
                      +++++.+     |++++++++++++++|++++++||+|.+.|+++|.++|+++|+++|+|++++.+.. ......++|++
T Consensus       149 ~~~v~~~-----d~~~l~~ai~~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-~~~~~~g~div  222 (430)
T 3ri6_A          149 VRFVDVM-----DSLAVEHACDETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-LEAKRLGVDIE  222 (430)
T ss_dssp             EEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-CCGGGGTCSEE
T ss_pred             EEEeCCC-----CHHHHHHhhCCCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-CChHHcCCEEE
Confidence            9999876     89999999999999999999999999999999999999999999999999997765 44445688999


Q ss_pred             EeccccccCCCC---ceEEEEecCCCc----cccccc--cC--------CccccccccCCCChhHHHHHHHHHHHHHHhh
Q 040741          253 SLSGHKIYGPKG---VGALYMRRRPRI----RVEPLI--NG--------GGQERGIRSGTLPTPLIVGFGSACEIAKKEM  315 (457)
Q Consensus       253 ~~s~~K~~g~~G---~G~l~~~~~~~~----~~~~~~--~~--------~~~~~~~~~~t~~~~~~~al~~al~~~~~~~  315 (457)
                      +.|++|++|+.|   .|+++.+.+...    +...+.  .+        .........++.++...+.+...    .+.+
T Consensus       223 ~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~~~~~~~a~l~l~~----l~~l  298 (430)
T 3ri6_A          223 VLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGPSLSPHNAYLQSLG----LETM  298 (430)
T ss_dssp             EEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH----HHHH
T ss_pred             EECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHHHHHhh----hhhH
Confidence            999999766542   466554432111    000000  00        00000011123333322222222    2345


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC---C----------cccc-eEEEEEccc-cchHHHhcc--cCeEeccc
Q 040741          316 DYDHKRITALHDRLLNGIKEKLDGVVVNGSME---R----------RYIG-NLNLSFAYV-EGESLLMGL--KEVAVSSG  378 (457)
Q Consensus       316 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~---~----------~~~~-~~~~~~~~~-~~~~~~~~l--~~i~~~~g  378 (457)
                      ..+.++..++++++.+.|++ .|.+..+..+.   .          ..++ ++.|.++.. ....++..+  .++.++.|
T Consensus       299 ~~r~~~~~~na~~la~~L~~-~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~~~~~~~~~~~l~~~~~~~s~G  377 (430)
T 3ri6_A          299 ALRIERSCQNAQELAHWLLS-IPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELESKEASYRFMDALKLIRRATNIH  377 (430)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHHCSSSEECSCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCHHHHHHHHHhCCcceecCCCC
Confidence            66777888999999999998 78876432221   1          1245 777777632 234566665  35667777


Q ss_pred             CccCCCCCChhHHHH--------HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          379 SACTSASLEPSYVLR--------ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       379 ~~~~~~~~~~~~~l~--------~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ..++......+..++        ..|+.    .+.||++++.    |+++.+++.|++++
T Consensus       378 ~~~sli~~p~~~~h~~~~~~~~~~~g~~----~~liRlsvG~----E~~~dl~~dl~~al  429 (430)
T 3ri6_A          378 DNKSLILSPYHVIYALNSHEERLKLEIS----PAMMRLSVGI----EEIEDLKEDILQAL  429 (430)
T ss_dssp             CSSCEEECTGGGC---------CGGGSC----TTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             CCCceeeCCcccccccCCHHHHHhcCCC----CCeEEEEecc----CCHHHHHHHHHHhh
Confidence            665532111111122        23444    4899999996    77888888888775

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=99.95  E-value=2e-26  Score=228.63  Aligned_cols=325  Identities=15%  Similarity=0.133  Sum_probs=221.2

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|||+.++.      ..+|++.+++.+.+....-. .      .....+...++++++++++|  +++++|++|||+
T Consensus        34 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~-~------~~~~~~~~~~l~~~la~~~~--~~~v~~~~gg~e  104 (395)
T 3nx3_A           34 KAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT-S------NLYYNENIAAAAKNLAKASA--LERVFFTNSGTE  104 (395)
T ss_dssp             TCCEEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCC-C------TTSBCHHHHHHHHHHHHHHT--CSEEEEESSHHH
T ss_pred             CCCEEEECCCcHHhccCCCCCHHHHHHHHHHHHhcccc-c------cccCCHHHHHHHHHHHHhcC--CCeEEEeCCHHH
Confidence            345689987662      24899999999988653211 1      11123678899999999998  457999999999


Q ss_pred             HHHHHHHHhhhhhc---CCCCEEEEcCCCCcchHHHHHHH----------HhcCcEEEEEeCCCCCCCCHHHHHHhcCCC
Q 040741          130 SNNVSIKGVMHFYK---DKKRHVITTQTEHKCVLDSCRHL----------QQEGFEITYLPVGADGIVNLDELRAAIRPD  196 (457)
Q Consensus       130 a~~~al~~~~~~~~---~~g~~vi~~~~~h~~~~~~~~~~----------~~~G~~v~~v~~~~~~~~d~~~le~~i~~~  196 (457)
                      |++.+++.+.....   .++++||+..+.|.+....+..+          ...+.++..++.+     |+++|+++++++
T Consensus       105 a~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~  179 (395)
T 3nx3_A          105 SIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNEK  179 (395)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccCC
Confidence            99999998764321   24678888777665554332221          0112456666654     899999999999


Q ss_pred             ceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--ccCC--CCcccEEEeccccccC-CCCce
Q 040741          197 TGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--VDVE--KWNVSLMSLSGHKIYG-PKGVG  266 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~~~~--~~~~Di~~~s~~K~~g-~~G~G  266 (457)
                      +++|+++++++++|.+.+    +++|.++|++||+++|+|++|+ +|...  ....  ...+|++++  +|.+| +.++|
T Consensus       180 ~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~--sK~~~~G~~~G  257 (395)
T 3nx3_A          180 TCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIMTS--AKALGCGLSVG  257 (395)
T ss_dssp             EEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE--CGGGTTTSCCE
T ss_pred             eEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEEEe--cccccCCCceE
Confidence            999999999999999988    9999999999999999999997 43221  1112  224576654  59544 34589


Q ss_pred             EEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh---cCCCeEE
Q 040741          267 ALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE---KLDGVVV  342 (457)
Q Consensus       267 ~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~~~  342 (457)
                      +++++++. .+.+.+...+..       ...++..+++..++++.+.+  +...++.+++.+++++.|.+   .++.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  328 (395)
T 3nx3_A          258 AFVINQKVASNSLEAGDHGST-------YGGNPLVCAGVNAVFEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKK  328 (395)
T ss_dssp             EEEECHHHHHHHSCTTCCSSC-------BSCCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred             EEEEchhhhhhhcCCcccCCC-------CCCCHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEE
Confidence            99998876 555655433222       14566777777777876654  33444455555555444433   1554443


Q ss_pred             eCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHH
Q 040741          343 NGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEV  419 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edi  419 (457)
                      ..    ..+.++.+.+... +...+...+  +||.+.++.                       .+++||+++..++++|+
T Consensus       329 ~~----~~g~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~e~i  381 (395)
T 3nx3_A          329 RK----GLGFMQGLSLDKSVKVAKVIQKCQENALLLISCG-----------------------ENDLRFLPPLILQKEHI  381 (395)
T ss_dssp             EE----EETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHHHH
T ss_pred             EE----eEEEEEEEEeCCcchHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHH
Confidence            22    1245566666543 345566555  688887652                       27999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEK  432 (457)
Q Consensus       420 d~~~~~l~~~~~~  432 (457)
                      ++++++|++++++
T Consensus       382 ~~~l~~l~~~l~~  394 (395)
T 3nx3_A          382 DEMSEKLRKALKS  394 (395)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998763

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.95  E-value=1.2e-27  Score=237.41  Aligned_cols=318  Identities=17%  Similarity=0.093  Sum_probs=216.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHH-HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLP-FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPK--EIIFTSGATE  129 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~--~i~~t~g~T~  129 (457)
                      .|+|..+++++++++.+++.+ .+....      .+.|+  ......++++.++++++.      +++  ++++|+|||+
T Consensus        35 ~y~d~~~~~~~~~~v~~a~~~~~~~~~~------~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~  106 (397)
T 3fsl_A           35 LYYNEDGIIPQLQAVAEAEARLNAQPHG------ASLYL--PMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSG  106 (397)
T ss_dssp             CCCCTTSCCCCCHHHHHHHHHHHHSCCC------CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHH
T ss_pred             EEECCCCCccCcHHHHHHHHhhccCccc------cccCC--CCCchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHH
Confidence            366667777888999999999 775311      11111  112345677788887753      567  8999999999


Q ss_pred             HHHHHHH--HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcC---CCceEEEE
Q 040741          130 SNNVSIK--GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIR---PDTGLISV  202 (457)
Q Consensus       130 a~~~al~--~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~---~~t~li~i  202 (457)
                      |++++++  ++.    ++|++|++..+.|.++...++..   |.+++.++.  +.++.+|+++++++++   ++++++++
T Consensus       107 a~~~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  179 (397)
T 3fsl_A          107 ALKVGADFLKRY----FPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLH  179 (397)
T ss_dssp             HHHHHHHHHHHH----CTTCCEEEESSCCHHHHHHHHHT---TCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEEC
T ss_pred             HHHHHHHHHHhc----CCCCeEEEeCCCchhHHHHHHHc---CCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEe
Confidence            9999954  445    78999999999999988776665   999999998  4567899999999998   67899999


Q ss_pred             eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-----cc---C-CCCcccEEEeccccccCCCC--ceEE
Q 040741          203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-----VD---V-EKWNVSLMSLSGHKIYGPKG--VGAL  268 (457)
Q Consensus       203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-----~~---~-~~~~~Di~~~s~~K~~g~~G--~G~l  268 (457)
                      ++++||+|.+.+   +++|+++|++||+++|+|++|+.....     ..   . ...+.++++.|++|.+|++|  +|++
T Consensus       180 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~riG~~  259 (397)
T 3fsl_A          180 PCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGL  259 (397)
T ss_dssp             SSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCCEEE
T ss_pred             CCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCCCeeEE
Confidence            999999999977   558999999999999999999754432     01   1 12245688899999988666  8998


Q ss_pred             EEecC---CCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC-
Q 040741          269 YMRRR---PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD-  338 (457)
Q Consensus       269 ~~~~~---~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~-  338 (457)
                      ++...   .+.++......   ..+.....++.....++..++...      .+.+++..++++++++++.+.|.+ ++ 
T Consensus       260 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~  335 (397)
T 3fsl_A          260 SVMCEDAEAAGRVLGQLKA---TVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLST-EMP  335 (397)
T ss_dssp             EEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCT
T ss_pred             EEecCCHHHHHHHHHHHHH---HHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            86422   12222111100   000111233444444444344321      345788889999999999999988 43 


Q ss_pred             --CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          339 --GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       339 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                        ++.+..+.    .++  +.+...+.+.+...+  +||.+.+|                         +  ||+++.. 
T Consensus       336 ~~~~~~~~~~----~~~--~~~~~~~~~~~~~~l~~~gi~v~~g-------------------------~--Ris~~~~-  381 (397)
T 3fsl_A          336 ERNFDYLLNQ----RGM--FSYTGLSAAQVDRLREEFGVYLIAS-------------------------G--RMCVAGL-  381 (397)
T ss_dssp             TSCCTHHHHC----CSS--EEECCCCHHHHHHHHHTTCEECCTT-------------------------C--EEEGGGC-
T ss_pred             CCCceeecCC----ceE--EEecCCCHHHHHHHHHhCCEEECCC-------------------------C--eEEEEec-
Confidence              44443321    121  122233444444444  58887654                         2  8888754 


Q ss_pred             CHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQ  429 (457)
Q Consensus       415 t~edid~~~~~l~~~  429 (457)
                      ++++|++++++|+++
T Consensus       382 ~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          382 NTANVQRVAKAFAAV  396 (397)
T ss_dssp             CTTTHHHHHHHHHHH
T ss_pred             CHhhHHHHHHHHHhh
Confidence            457899999999875

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=99.95  E-value=1.3e-25  Score=222.88  Aligned_cols=321  Identities=18%  Similarity=0.205  Sum_probs=222.0

Q ss_pred             CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++   .   +.++++.+++.+.+... +++.+     .+ ..+...++++.+++++|.  +++++++|||+
T Consensus        38 ~g~~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-----~~-~~~~~~~l~~~la~~~g~--~~v~~~~gg~~  108 (397)
T 2ord_A           38 KGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL-IHCSN-----LF-WNRPQMELAELLSKNTFG--GKVFFANTGTE  108 (397)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-SCCCT-----TS-EEHHHHHHHHHHHHTTTS--CEEEEESSHHH
T ss_pred             CCCEEEECCccccccccCCCCHHHHHHHHHHHHhc-ccCcc-----cc-CCHHHHHHHHHHHHhcCC--CeEEEeCCHHH
Confidence            45568888654   3   35899999999998753 22211     11 125778899999999984  57999999999


Q ss_pred             HHHHHHHHhhhhhc--CC-CCEEEEcCCC-CcchHHHHHHHHhcCcE------------EEEEeCCCCCCCCHHHHHHhc
Q 040741          130 SNNVSIKGVMHFYK--DK-KRHVITTQTE-HKCVLDSCRHLQQEGFE------------ITYLPVGADGIVNLDELRAAI  193 (457)
Q Consensus       130 a~~~al~~~~~~~~--~~-g~~vi~~~~~-h~~~~~~~~~~~~~G~~------------v~~v~~~~~~~~d~~~le~~i  193 (457)
                      |+.++++++..+..  ++ ++.|++..+. |.....++...   |.+            +..++.+     |++++++++
T Consensus       109 a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~---g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l  180 (397)
T 2ord_A          109 ANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTAT---GQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKM  180 (397)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHS---BCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhcc---CChhhccccCCCCCCeeEecCC-----CHHHHHHHh
Confidence            99999998763210  03 4567666554 55565565544   543            6666653     899999999


Q ss_pred             CCCceEEEEecccccccc-c---cChHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCCC--cccEEEeccccccCC-C
Q 040741          194 RPDTGLISVMAVNNEIGV-I---QPMEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEKW--NVSLMSLSGHKIYGP-K  263 (457)
Q Consensus       194 ~~~t~li~i~~~~~~~G~-~---~~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~~--~~Di~~~s~~K~~g~-~  263 (457)
                      ++++++|++++++||+|. +   .++++|.++|++||+++|+|++|+ ++..  +..+...  .+|++  |++|.+|+ .
T Consensus       181 ~~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~  258 (397)
T 2ord_A          181 SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGV  258 (397)
T ss_dssp             CTTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTS
T ss_pred             hcCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhCCCCCee--eeccccCCCc
Confidence            999999999999999999 4   458899999999999999999997 2211  1211112  26866  55796663 3


Q ss_pred             CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCe
Q 040741          264 GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGV  340 (457)
Q Consensus       264 G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~  340 (457)
                      ++|+++++++.. .+.+...+       ...+.+...+.++.++++...+  ++..++.+++++++.+.|++.   ++.+
T Consensus       259 r~G~~~~~~~~~-~l~~~~~~-------~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~  328 (397)
T 2ord_A          259 PIGAVIVNERAN-VLEPGDHG-------TTFGGNPLACRAGVTVIKELTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVV  328 (397)
T ss_dssp             CCEEEEECSTTC-CCCTTSSC-------CSSTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTE
T ss_pred             CeEEEEEchHhc-ccCCCCcC-------CCCCCCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence            589999988765 54331111       1124566777777777776544  567788888888888888761   2332


Q ss_pred             EEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741          341 VVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA  417 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e  417 (457)
                      ....    ..+.++.+.++. .+..++...|  +||.+.++.                       .+.+||+++..++++
T Consensus       329 ~~~~----~~g~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~-----------------------~~~iRis~~~~~~~e  381 (397)
T 2ord_A          329 ADVR----GMGLMIGIQFREEVSNREVATKCFENKLLVVPAG-----------------------NNTIRFLPPLTVEYG  381 (397)
T ss_dssp             EEEE----EETTEEEEEECTTSCHHHHHHHHHHTTEECEEET-----------------------TTEEEECCCTTCCHH
T ss_pred             EEEE----EEeEEEEEEECChHHHHHHHHHHHHCCCEEccCC-----------------------CCEEEEECCcCCCHH
Confidence            2111    124555666653 2355666665  688887652                       279999998888999


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQVEK  432 (457)
Q Consensus       418 did~~~~~l~~~~~~  432 (457)
                      |+++++++|++++++
T Consensus       382 ~i~~~~~~l~~~l~~  396 (397)
T 2ord_A          382 EIDLAVETLKKVLQG  396 (397)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            999999999988753

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.95  E-value=2.9e-27  Score=236.63  Aligned_cols=319  Identities=16%  Similarity=0.110  Sum_probs=216.1

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCC--cEEEeCChHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPK--EIIFTSGATES  130 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~--~i~~t~g~T~a  130 (457)
                      +|+|..+.+++++.+.+++.+.+....      .+.|+  ......++++.++++++.      +++  ++++|+|||+|
T Consensus        58 ~y~d~~~~~~~~~~v~~a~~~~~~~~~------~~~Y~--~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~a  129 (420)
T 4f4e_A           58 VYTNEDGKIPLLRAVRDAEKARVEAGL------PRGYL--PIDGIAAYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGA  129 (420)
T ss_dssp             SCCCTTSCCCCCHHHHHHHHHHHHTCC------CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             eeECCCCCccCcHHHHHHHHHHhccCC------CCCCC--CCCCcHHHHHHHHHHhcCCCccccccCceEEEECCccHHH
Confidence            355555667788999999999887511      11111  112345677777777643      456  79999999999


Q ss_pred             HHHHHH--HhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC--CCCCCCCHHHHHHhcC---CCceEEEEe
Q 040741          131 NNVSIK--GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV--GADGIVNLDELRAAIR---PDTGLISVM  203 (457)
Q Consensus       131 ~~~al~--~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~--~~~~~~d~~~le~~i~---~~t~li~i~  203 (457)
                      ++++++  ++.    ++||+|+++.+.|.++...++..   |.+++.++.  +.++.+|+++++++++   +++++++++
T Consensus       130 l~~~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~  202 (420)
T 4f4e_A          130 LKIGADFLRTL----NPKAKVAISDPSWENHRALFDMA---GFEVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHA  202 (420)
T ss_dssp             HHHHHHHHHHH----CTTCCEEEEESCCHHHHHHHHHT---TCCEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEEC
T ss_pred             HHHHHHHHHHh----CCCCEEEEeCCCcHhHHHHHHHc---CCeEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeC
Confidence            999954  455    89999999999999988777665   999999998  3567899999999998   678999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc-----c---C-CCCcccEEEeccccccCCCC--ceEEE
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV-----D---V-EKWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~---~-~~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++||||.+.+   +++|+++|++||+++|+|++|+......     .   . ...+.++++.|++|.+|++|  +|+++
T Consensus       203 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~~~  282 (420)
T 4f4e_A          203 CCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGERVGALS  282 (420)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGGCEEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCCCcEEEE
Confidence            99999999977   6688999999999999999986443211     0   0 12345788999999988766  89987


Q ss_pred             Eec---CCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcC---
Q 040741          270 MRR---RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKL---  337 (457)
Q Consensus       270 ~~~---~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~---  337 (457)
                      +..   +.+.++......   ..+.....++.....++..++...      .+.+++..++++++++++.+.|++ +   
T Consensus       283 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~  358 (420)
T 4f4e_A          283 IITDSKDEAARVLSQLKR---VIRTNYSNPPTHGGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKA-AGIE  358 (420)
T ss_dssp             EECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCS
T ss_pred             EEcCCHHHHHHHHHHHHH---HHhcccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC
Confidence            522   111111111100   000111233444444444444331      345788889999999999999998 5   


Q ss_pred             CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          338 DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      +++.+..+.    .++  +.+...+.+.+...+  +||.+.++                           .||+++.. +
T Consensus       359 ~~~~~~~~~----~g~--~~~~~~~~~~~~~~l~~~gI~v~~~---------------------------~Ris~~~~-~  404 (420)
T 4f4e_A          359 RDFSFINAQ----RGM--FSYSGLTSAQVDRLREEFGIYAVST---------------------------GRICVAAL-N  404 (420)
T ss_dssp             SCCTHHHHS----CSS--EEECCCCHHHHHHHHHHHCEECCTT---------------------------SEEEGGGC-C
T ss_pred             CCceeECCC----ccE--EEEeCCCHHHHHHHHHhCCEEecCC---------------------------CeEEEecC-C
Confidence            244443321    122  122334444444444  57777542                           28998753 5


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQV  430 (457)
Q Consensus       416 ~edid~~~~~l~~~~  430 (457)
                      ++++++++++|++++
T Consensus       405 ~~~i~~~~~~l~~~l  419 (420)
T 4f4e_A          405 TRNLDVVANAIAAVL  419 (420)
T ss_dssp             TTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh
Confidence            677999999999875

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.95  E-value=1.7e-26  Score=243.12  Aligned_cols=311  Identities=13%  Similarity=0.044  Sum_probs=226.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHH-HHHHHhcCcEEEEEeCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQEGFEITYLPVG  179 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~-~~~~~~~G~~v~~v~~~  179 (457)
                      ..+.++++.+|+++|++. .+++++|+|+|+.+++.+++    ++||+||++.++|.++..+ ++.   .|+++++++..
T Consensus       173 ~~i~e~e~~lA~~~gae~-~i~v~nGtt~an~~ai~al~----~pGD~VLv~~~~H~S~~~~~~~l---~Ga~~v~v~~~  244 (730)
T 1c4k_A          173 GPAVAAEKHAARVYNADK-TYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAM---AGGRPVYLQTN  244 (730)
T ss_dssp             THHHHHHHHHHHHTTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTT---TCCEEEEECEE
T ss_pred             HHHHHHHHHHHHHHCCCc-EEEECCHHHHHHHHHHHHhc----CCCCEEEEcCCchHHHHHHHHHH---CCCEEEEEeCC
Confidence            367899999999999874 37777777899999999998    8999999999999999887 444   49999988764


Q ss_pred             CC-----CCCCHHHH-----HHhcCCC------c----eEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCC
Q 040741          180 AD-----GIVNLDEL-----RAAIRPD------T----GLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK  239 (457)
Q Consensus       180 ~~-----~~~d~~~l-----e~~i~~~------t----~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~  239 (457)
                      .+     |.+|++++     +++|+++      +    ++++++++ |++|.+.|+++|+++|++||+++|+|+||+.+.
T Consensus       245 ~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livDeAh~~~~  323 (730)
T 1c4k_A          245 RNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYE  323 (730)
T ss_dssp             ECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEECTTCCGG
T ss_pred             ccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEEccccccc
Confidence            32     34788888     9999876      5    88989887 579999999999999999999999999996421


Q ss_pred             ---------CcccCCCCccc----EEEecccc-ccCCCCceEEEEecCCCcc----ccccccCCccccccccCCCChhHH
Q 040741          240 ---------IPVDVEKWNVS----LMSLSGHK-IYGPKGVGALYMRRRPRIR----VEPLINGGGQERGIRSGTLPTPLI  301 (457)
Q Consensus       240 ---------~~~~~~~~~~D----i~~~s~~K-~~g~~G~G~l~~~~~~~~~----~~~~~~~~~~~~~~~~~t~~~~~~  301 (457)
                               .+++....++|    +++.|+|| +.|+.+.|+++++++.+..    +...... .....+.+++++...+
T Consensus       324 ~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~-~~~~~~~stsp~~~~i  402 (730)
T 1c4k_A          324 QFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFN-NSFNLFMSTSPFYPMY  402 (730)
T ss_dssp             GSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHH-HHHHHHSCSSCCHHHH
T ss_pred             ccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHH-HHHHHhCCCCCcHHHH
Confidence                     12223234677    99999999 4556667888888764311    1100000 0001234578888889


Q ss_pred             HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--------------------------------C
Q 040741          302 VGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--------------------------------R  348 (457)
Q Consensus       302 ~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--------------------------------~  348 (457)
                      +++.+|++.+.. +.....++..++++++++.|.+.++++.+.++..                                .
T Consensus       403 aal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  482 (730)
T 1c4k_A          403 AALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYE  482 (730)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCT
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhcccc
Confidence            999888887765 4567788899999999999977458888876432                                0


Q ss_pred             -c-c------cceEEEEEcc------------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          349 -R-Y------IGNLNLSFAY------------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       349 -~-~------~~~~~~~~~~------------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                       . .      +..+.+..++            .++..+...|  +||.+..                       .....+
T Consensus       483 ~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~-----------------------~~~~~i  539 (730)
T 1c4k_A          483 GYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEK-----------------------SDLNSI  539 (730)
T ss_dssp             TCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSE-----------------------ECSSEE
T ss_pred             ccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEE-----------------------CCCCeE
Confidence             0 0      1113344321            2334455445  3554432                       123789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVK  444 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~  444 (457)
                      |+.++..+|++++++++++|+++.+++.+..|+++...
T Consensus       540 r~~~s~g~t~e~i~~Ll~aL~~i~~~~~~~~~~~~~~p  577 (730)
T 1c4k_A          540 LFLMTPAETPAKMNNLITQLLQLQRLIEEDAPLKQVLP  577 (730)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHTTCBHHHHCH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHhcccccchhhhcc
Confidence            99999999999999999999999998877777776553

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.95  E-value=7.6e-27  Score=232.06  Aligned_cols=324  Identities=15%  Similarity=0.043  Sum_probs=214.0

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC------CCcEEE--eCChH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS------PKEIIF--TSGAT  128 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~------~~~i~~--t~g~T  128 (457)
                      .-+|+|+.+++++.+++.+++.+.... .++... .+.      ....++++.++++++..      ++++++  |+|||
T Consensus        35 ~g~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y-~~~------~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~  106 (401)
T 7aat_A           35 VGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEY-LPI------AGLADFTRASAELALGENSEAFKSGRYVTVQGISGT  106 (401)
T ss_dssp             CCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCC-CCT------TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHH
T ss_pred             eeeEECCCCCEechHHHHHHHHHhccc-ccccCC-CCC------CCCHHHHHHHHHHhcCCCccccccCceEEEecCcch
Confidence            335778888888889999999988753 122111 111      12557777888877543      778877  99999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC---CCceEEEEe
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR---PDTGLISVM  203 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~---~~t~li~i~  203 (457)
                      +|+++++.++..+. ++|++|+++.+.|..+...++..   |.+++.++.+  .++.+|++++++.++   +++++++++
T Consensus       107 ~al~~~~~~l~~~~-~~gd~Vlv~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~  182 (401)
T 7aat_A          107 GSLRVGANFLQRFF-KFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA  182 (401)
T ss_dssp             HHHHHHHHHHHHHC-TTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEES
T ss_pred             HHHHHHHHHHHHhc-cCCCEEEEcCCCchhHHHHHHHc---CCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeC
Confidence            99999888765332 68999999999999998877665   9999999975  367899997766654   678999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-c-----cC----CCCcccEEEeccccccCCCC--ceEE
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-V-----DV----EKWNVSLMSLSGHKIYGPKG--VGAL  268 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-~-----~~----~~~~~Di~~~s~~K~~g~~G--~G~l  268 (457)
                      ++|||||.+.+   +++|+++|++||+++++|++|...... .     .+    ......+++.|+||.||++|  +|++
T Consensus       183 ~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~RiG~l  262 (401)
T 7aat_A          183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAF  262 (401)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEE
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccCceEEE
Confidence            99999998877   778899999999999999998643221 1     01    12245688999999998777  8998


Q ss_pred             EEecCCCc---cccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC-
Q 040741          269 YMRRRPRI---RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD-  338 (457)
Q Consensus       269 ~~~~~~~~---~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~-  338 (457)
                      ++.....+   .+...+...   .......++......+..++...      .+.+++..++++++++++.+.|.+ +. 
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~  338 (401)
T 7aat_A          263 TVICRDAEEAKRVESQLKIL---IRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKK-EGS  338 (401)
T ss_dssp             EEECSSHHHHHHHHHHHHHH---HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC
T ss_pred             EEEeCCHHHHHHHHHHHHHH---HHhccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            87321111   111111000   00011133333222222223211      334678888999999999999988 42 


Q ss_pred             --CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          339 --GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       339 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                        ++.+..+.    .++  +.+...+.+.+...+  +||.+.                           ..+||+++..+
T Consensus       339 ~~~~~~~~~~----~~~--~~~~~~~~~~~~~ll~~~gi~v~---------------------------~~~Ris~~~~~  385 (401)
T 7aat_A          339 SHNWQHITDQ----IGM--FCFTGLKPEQVERLTKEFSIYMT---------------------------KDGRISVAGVA  385 (401)
T ss_dssp             CSCCHHHHHC----CSS--EEECCCCHHHHHHHHHHHCEECC---------------------------TTCEEEGGGCC
T ss_pred             CCCCceecCC----cce--EEecCCCHHHHHHHHHhCCEecc---------------------------CCCeEEeccCC
Confidence              23332211    222  223334444443333  477764                           24699998765


Q ss_pred             CHHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQV  430 (457)
Q Consensus       415 t~edid~~~~~l~~~~  430 (457)
                      + ++|++++++|++++
T Consensus       386 ~-~~i~~~~~~l~~~~  400 (401)
T 7aat_A          386 S-SNVGYLAHAIHQVT  400 (401)
T ss_dssp             T-TTHHHHHHHHHHHH
T ss_pred             h-hhHHHHHHHHHHHh
Confidence            4 55999999999875

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=99.95  E-value=6.3e-25  Score=219.60  Aligned_cols=323  Identities=15%  Similarity=0.150  Sum_probs=219.9

Q ss_pred             CCcEEecCCCCC---CC----CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741           56 GRPLYLDMQATT---PV----DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA  127 (457)
Q Consensus        56 ~~~i~l~~~~~~---~~----~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~  127 (457)
                      .+..|+|+.++.   ++    +|++.+++.+.+.... . .+ ...+.   .+...++++.+++++|.+ +++++|++||
T Consensus        40 ~g~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~-~~-~~~~~---~~~~~~l~~~la~~~~~~~~~~v~~~~gg  113 (419)
T 2eo5_A           40 DGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-H-AA-ANDFY---NIPQLELAKKLVTYSPGNFQKKVFFSNSG  113 (419)
T ss_dssp             TSCEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-C-CS-CSCSC---CHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred             CCCEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-c-cc-ccccC---CHHHHHHHHHHHHhCCCCcCCEEEEeCch
Confidence            445788886654   33    7999999999986531 1 00 01111   245678889999999987 7789999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHH-----HhcC-----cEEEEEeCCCCCC-------------
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHL-----QQEG-----FEITYLPVGADGI-------------  183 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~-----~~~G-----~~v~~v~~~~~~~-------------  183 (457)
                      ++|++++++.+..   .++++|++..+.|. ....+....     ...+     ..++.++.+.+..             
T Consensus       114 ~ea~~~ai~~~~~---~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~  190 (419)
T 2eo5_A          114 TEAIEASIKVVKN---TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSE  190 (419)
T ss_dssp             HHHHHHHHHHHHT---TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHH
T ss_pred             HHHHHHHHHHHHH---hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchh
Confidence            9999999998763   13788888776554 454444321     1112     3577777764322             


Q ss_pred             ---CCHHHHH-HhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc----ccCC
Q 040741          184 ---VNLDELR-AAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP----VDVE  245 (457)
Q Consensus       184 ---~d~~~le-~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~----~~~~  245 (457)
                         +|+++|+ ++++     +++++|+++.++|++|.+.+    +++|.++|++||+++|+|++|+ ++...    .+..
T Consensus       191 ~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~  270 (419)
T 2eo5_A          191 LVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENF  270 (419)
T ss_dssp             HHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGG
T ss_pred             hHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhc
Confidence               4688999 8886     46778888877778998777    9999999999999999999997 54221    1222


Q ss_pred             CCcccEEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          246 KWNVSLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       246 ~~~~Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      ...+|++  |++|.+| + .++|+++++++.+ .+ ....       ....+.++..++++.++++...+    ..++++
T Consensus       271 ~~~~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~-------~~t~~~n~~~~~aa~aal~~~~~----~~~~~~  335 (419)
T 2eo5_A          271 NTVPDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMH-------SNTFGGNALACAIGSKVIDIVKD----LLPHVN  335 (419)
T ss_dssp             TCCCSEE--EECGGGGTTTSCCEEEEEEGGGC-CC--------------CCCCCHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred             CCCCCEE--EecccccCCccceEEEEEchHhh-cC-Cccc-------CCCCCCCHHHHHHHHHHHHHHHH----HHHHHH
Confidence            2346766  5669554 3 5689999998765 44 2111       11224577777777788876543    778889


Q ss_pred             HHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-c-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          324 ALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-Y-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      ++++++.+.|.+ + ...+.+     .+.++.+.+. . .... +...|  +||.+.++.                    
T Consensus       336 ~~~~~l~~~L~~-~-~~~~~~-----~g~~~~i~~~~~~~~~~-~~~~l~~~Gv~v~~~~--------------------  387 (419)
T 2eo5_A          336 EIGKIFAEELQG-L-ADDVRG-----IGLAWGLEYNEKKVRDR-IIGESFKRGLLLLPAG--------------------  387 (419)
T ss_dssp             HHHHHHHHHHTT-S-SSEEEE-----ETTEEEEECSCHHHHHH-HHHHHHHTTEECEEET--------------------
T ss_pred             HHHHHHHHHHHH-h-hhheEe-----eeEEEEEEEecCccHHH-HHHHHHHCCCEEecCC--------------------
Confidence            999999999988 4 111211     1445555552 1 1123 55555  688887642                    


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                         .+++||+++..++++|+++++++|+++++++
T Consensus       388 ---~~~lRis~~~~~t~e~i~~~l~~l~~~l~~~  418 (419)
T 2eo5_A          388 ---RSAIRVIPPLVISEEEAKQGLDILKKVIKVV  418 (419)
T ss_dssp             ---TTEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             ---CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence               2799999999999999999999999988753

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.94  E-value=3.2e-26  Score=225.40  Aligned_cols=309  Identities=12%  Similarity=0.019  Sum_probs=206.6

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      +.++++++++++..     +++         +  ......+++.+++++|++ ++++++++|||+|++++++++      
T Consensus        39 ~~~~~~~v~~a~~~-----~~~---------~--~~~~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~------   96 (374)
T 2aeu_A           39 GFLIDEKDKALLNT-----YIG---------S--SYFAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL------   96 (374)
T ss_dssp             CCCCCHHHHHHHTS-----TTH---------H--HHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH------
T ss_pred             CCCCCHHHHHHHHH-----hcC---------c--hHHHHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC------
Confidence            55899999999861     111         1  123356777888999984 367999999999999998875      


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceE-EEEeccccccc-cccChHHHHHHH
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGL-ISVMAVNNEIG-VIQPMEEIGQIC  222 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~l-i~i~~~~~~~G-~~~~l~~i~~l~  222 (457)
                      +||+|+++.+.|++.......++..|++++.+       .|+++++++ ++++++ |++++++||+| ...++++|.++|
T Consensus        97 ~gd~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~~~~~~~v~~~~p~nptG~~~~~l~~i~~l~  168 (374)
T 2aeu_A           97 KPKKVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-IDKDTLVIITGSTMDLKVIELENFKKVINTA  168 (374)
T ss_dssp             CCSEEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-CCTTEEEEEECBCTTSCBCCHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-CCCccEEEEEccCCCCCCCCcccHHHHHHHH
Confidence            68999999997776554333445569999888       289999999 888999 99999999999 888999999999


Q ss_pred             HhcCCcEEEehhhhcCCC-cc-c--CCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCCh
Q 040741          223 KEFKIPFHTDAAQALGKI-PV-D--VEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT  298 (457)
Q Consensus       223 ~~~~v~li~D~a~~~g~~-~~-~--~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~  298 (457)
                      ++||+++|+|++++.+.. +. .  ....+.|+++.|+||.+++.++|+++++++.++++......       ..++++.
T Consensus       169 ~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~~~~~~l~~~~~~-------~~~~~~~  241 (374)
T 2aeu_A          169 KNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKKELVDKIYIEGTK-------FGLEAQP  241 (374)
T ss_dssp             HHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEHHHHHHHHHHHHT-------TTCBCCH
T ss_pred             HHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECHHHHHHHHHhhcc-------ccCCCCH
Confidence            999999999999986531 11 1  11246799999999965444689999998766665543321       1125566


Q ss_pred             hHHHHHHHHHHHHHH-hhHHHHHHHHHH----HHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccc------h
Q 040741          299 PLIVGFGSACEIAKK-EMDYDHKRITAL----HDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEG------E  364 (457)
Q Consensus       299 ~~~~al~~al~~~~~-~~~~~~~~~~~~----~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~------~  364 (457)
                      ..+.++..+++.... .+++..+..+.+    .+.+.+.|.. +   +++.+...+    .+.+.........      .
T Consensus       242 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~g~~~~~~~----~g~~~~~~~~~~~~~~~~~~  316 (374)
T 2aeu_A          242 PLLAGIYRALKNFNLERIRKAFERAKNFDLSKIEKLNKELKA-IDDNINIVYERTP----TGFVIKRVYKDDTINIKKLI  316 (374)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHTT-TCTTEEEEEEECS----SEEEEEEEESSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhhccCcceeeCC----ceEEEEeecccccccccchH
Confidence            666666666655322 223333333333    4555555555 3   345543322    2222222221111      1


Q ss_pred             HHHh-cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHH
Q 040741          365 SLLM-GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       365 ~~~~-~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++.. .+  +||.+.+|..+.                  ...+++||+++. ..+++++++++++++++++++.
T Consensus       317 ~~~~~ll~~~gV~v~~g~~~~------------------~~~~~lRi~~~~~~~~~~~l~~l~~~l~~~l~~~~  372 (374)
T 2aeu_A          317 EIGFNLLKNYGIITITVAGMP------------------GASKSLRIDLTSRDAERIDDNYIIKAIVESIKMAF  372 (374)
T ss_dssp             HHHHHHHHHHCEECSTTSSSC------------------SSCCSEEEETTSGGGGGSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCEEEecCCCCC------------------CCCCeEEEEcCCchHHHHHHHHHHHHHHHHHHHHh
Confidence            1332 23  589988775321                  123689999975 2334458999999998887764

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.94  E-value=2.1e-26  Score=232.24  Aligned_cols=341  Identities=16%  Similarity=0.171  Sum_probs=230.1

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHH-HHHHHHhCCCCCcEEE-eCChHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETAR-SQIADLIGASPKEIIF-TSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~-~~la~~~g~~~~~i~~-t~g~T~a~~  132 (457)
                      +.|.| .++.+++++++++++.+.+.+.+  ++|.+ .+..+....+..+++. +++++++|++.  +.+ ++|||+|+.
T Consensus        46 ~~i~l-~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~-~~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~a~~  121 (447)
T 3h7f_A           46 DTLEM-IASENFVPRAVLQAQGSVLTNKYAEGLPGR-RYYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQANA  121 (447)
T ss_dssp             HSEEC-CTTCCCCCHHHHHHHTSGGGGCCCCEETTE-ESSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHHHHH
T ss_pred             CceeE-ecCCCCCCHHHHHHHHHHhcCCccccCCcc-cccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHHHHH
Confidence            34555 45667889999999999886544  33433 2223444444556555 99999999875  444 888999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchH-HHH--HHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEecccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVL-DSC--RHLQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNN  207 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~-~~~--~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~  207 (457)
                      .+++++.    ++||+|++..++|.++. ...  ... ..+..++.++.+ .++.+|+++++++++ .++++|+++.++|
T Consensus       122 ~a~~~~~----~~Gd~Vl~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~i~~~~~~~  196 (447)
T 3h7f_A          122 AVLHALM----SPGERLLGLDLANGGHLTHGMRLNFS-GKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAY  196 (447)
T ss_dssp             HHHHHHC----CTTCEEEEECGGGTCCGGGTCTTSHH-HHSSEEEEECCCTTTCSCCHHHHHHHHHHHCCSEEEEECSSC
T ss_pred             HHHHHhc----CCCCEEEecCcccccccchhhhhhhc-CCeeEEEEcCcCcccCCcCHHHHHHHHHhcCCeEEEEcCCCC
Confidence            9999988    89999999999987722 111  111 125677777776 567899999999985 4688888888888


Q ss_pred             ccccccChHHHHHHHHhcCCcEEEehhhhcCC----CcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccc
Q 040741          208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGK----IPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      +++.  ++++|.++|++||+++|+|++|+.|.    ...+.. .++|++++|+||. .||.| |+++.+++..+++....
T Consensus       197 ~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~-~~~di~~~s~sK~l~G~~g-G~i~~~~~~~~~l~~~~  272 (447)
T 3h7f_A          197 PRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPV-PHADVVSTTVHKTLGGGRS-GLIVGKQQYAKAINSAV  272 (447)
T ss_dssp             CSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-TTCSEEEEESSGGGCCCSC-EEEEECGGGHHHHHHHH
T ss_pred             CCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCC-CCCcEEEecCCcCCCCCCe-EEEEECHHHHHHHhhhc
Confidence            7665  99999999999999999999986542    111211 2579999999995 45776 99999876655554433


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcC----CCeEEeCCCCCcccceEEEE
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKL----DGVVVNGSMERRYIGNLNLS  357 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~~~  357 (457)
                      ..+      ..++++...++++..++....+ ++++..++..++++++.+.|.+ .    +++.+......  ...+.+.
T Consensus       273 ~~~------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~g~~~~~~~~~--~~~~~~~  343 (447)
T 3h7f_A          273 FPG------QQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA-PDVAKAGVSVVSGGTD--VHLVLVD  343 (447)
T ss_dssp             TTT------TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS-HHHHHTTCEEGGGSCS--SSEEEEE
T ss_pred             CCc------ccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh-ccccCCCeEEecCCCC--CCEEEEE
Confidence            221      2346666667777777766543 5788889999999999999987 4    47777642211  2334444


Q ss_pred             Ecc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHH
Q 040741          358 FAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQ  429 (457)
Q Consensus       358 ~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~  429 (457)
                      +..  .+...+...+  .||.+.......             ...+....+.+||++...    .+++|+++++++|+++
T Consensus       344 ~~~~~~~~~~~~~~l~~~GI~v~~~~i~~-------------~~~~p~~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~  410 (447)
T 3h7f_A          344 LRDSPLDGQAAEDLLHEVGITVNRNAVPN-------------DPRPPMVTSGLRIGTPALATRGFGDTEFTEVADIIATA  410 (447)
T ss_dssp             CTTSSCCHHHHHHHHHHTTEECBC--------------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHCCeEEecccCCC-------------CCCCCCCCCceeccCHHHhhCCCCHHHHHHHHHHHHHH
Confidence            432  2344444444  488876321100             000112236899997654    5789999999998887


Q ss_pred             HHH
Q 040741          430 VEK  432 (457)
Q Consensus       430 ~~~  432 (457)
                      +++
T Consensus       411 l~~  413 (447)
T 3h7f_A          411 LAT  413 (447)
T ss_dssp             HHS
T ss_pred             Hhc
Confidence            654

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=99.94  E-value=4.3e-25  Score=221.10  Aligned_cols=327  Identities=12%  Similarity=0.090  Sum_probs=220.1

Q ss_pred             CcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHH
Q 040741           57 RPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~  129 (457)
                      +..|+|+.++.      ..++++.+++.+.+... ++...     .+...+...++++.|+++++.+ +++++||+||++
T Consensus        40 g~~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~  113 (426)
T 1sff_A           40 GREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCF-----QVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSE  113 (426)
T ss_dssp             CCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-SCCCT-----TTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred             CCEEEEcccChhhcccCCCCHHHHHHHHHHHHhC-CCccc-----cccCCHHHHHHHHHHHHhCCcccccEEEEeCchHH
Confidence            34577765332      36899999999988642 22110     1222357788999999999323 368999999999


Q ss_pred             HHHHHHH---HhhhhhcCCCCEEEEcCCCCc-chHHHHHHHHhcCc-------------EEEEEeCCC-----CCCCCHH
Q 040741          130 SNNVSIK---GVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQQEGF-------------EITYLPVGA-----DGIVNLD  187 (457)
Q Consensus       130 a~~~al~---~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~~~G~-------------~v~~v~~~~-----~~~~d~~  187 (457)
                      |++++++   .+.    +++ +|++..+.|. ....++...   |.             .++.++.+.     ++.+|++
T Consensus       114 a~~~~~~~a~~~~----~~~-~vi~~~p~y~~~~~~~~~~~---g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~  185 (426)
T 1sff_A          114 AVENAVKIARAAT----KRS-GTIAFSGAYHGRTHYTLALT---GKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA  185 (426)
T ss_dssp             HHHHHHHHHHHHH----TCC-EEEEETTCCCCSSHHHHHHS---SCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHH
T ss_pred             HHHHHHHHHHHhh----CCC-eEEEECCCcCCCchHhhhhc---CCccccccccCCCCCCcEEeCCCccccccchHHHHH
Confidence            9999988   444    566 6777666554 454455443   33             266777653     2246899


Q ss_pred             HHHHhcC-----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcccEEE
Q 040741          188 ELRAAIR-----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVSLMS  253 (457)
Q Consensus       188 ~le~~i~-----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~Di~~  253 (457)
                      +|+++++     +++++|++++..+++|.+.+    +++|.++|++||+++|+|++|+ ++..  .  ++.....+|++ 
T Consensus       186 ~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~-  264 (426)
T 1sff_A          186 SIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLT-  264 (426)
T ss_dssp             HHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEE-
T ss_pred             HHHHHHHhccCCCceEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEE-
Confidence            9999886     46778888655444997777    9999999999999999999998 3211  1  12222246766 


Q ss_pred             eccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~  331 (457)
                       |++|.+|+ |  +|+++++++.++.+......       ...+.++..++++.++++.+.+  ....++.+++++++++
T Consensus       265 -s~sK~~~~-GlriG~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~  333 (426)
T 1sff_A          265 -TFAKSIAG-GFPLAGVTGRAEVMDAVAPGGLG-------GTYAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKD  333 (426)
T ss_dssp             -EECGGGGT-SSCCEEEEEEHHHHTTSCTTSBC-------CSSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHH
T ss_pred             -EEcccccC-CCceEEEEEcHHHHhhhccCCcC-------cCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHH
Confidence             66698776 6  79999998766555432111       1124567777777778887765  3456677777777777


Q ss_pred             HHhhc---CCCeEEeCCCCCcccceEEEEEcc---------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          332 GIKEK---LDGVVVNGSMERRYIGNLNLSFAY---------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       332 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      .|.+.   ++.+....+    .+.++.+.+..         .+..++...|  +||.+.+|...                
T Consensus       334 ~l~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~----------------  393 (426)
T 1sff_A          334 GLLAIAEKHPEIGDVRG----LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPY----------------  393 (426)
T ss_dssp             HHHHHHHTCTTEEEEEE----ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEESTT----------------
T ss_pred             HHHHHHHhCCCeEEEEE----EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCcEEecCCCC----------------
Confidence            77651   343332211    14555666632         1234555555  68988877521                


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                           .+++||+++..++++|+++++++|++++++++
T Consensus       394 -----~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~~~  425 (426)
T 1sff_A          394 -----YNVLRILVPLTIEDAQIRQGLEIISQCFDEAK  425 (426)
T ss_dssp             -----SCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -----CCEEEEECCccCCHHHHHHHHHHHHHHHHHHh
Confidence                 27999999988999999999999999988764

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=99.94  E-value=1.2e-24  Score=218.43  Aligned_cols=327  Identities=15%  Similarity=0.182  Sum_probs=217.2

Q ss_pred             CCcEEecCCC---CCC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQA---TTP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~---~~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.+   ..+   .+|++.+++.+.+.... +...     ++ ..+...++++.+++++|.  ++++|++|||+
T Consensus        63 ~G~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~~-~~~~-----~~-~~~~~~~l~~~la~~~g~--~~v~~~~sGse  133 (433)
T 1z7d_A           63 NDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLT-ICSR-----AF-FSVPLGICERYLTNLLGY--DKVLMMNTGAE  133 (433)
T ss_dssp             TCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCS-CCCT-----TS-EEHHHHHHHHHHHHHHTC--SEEEEESSHHH
T ss_pred             CCCEEEEcccchhhcccCCCCHHHHHHHHHHHHhCC-CccC-----Cc-CCHHHHHHHHHHHhhcCC--CeEEEeCCHHH
Confidence            4456888765   222   78999999999986532 2111     11 225678899999999984  56999999999


Q ss_pred             HHHHHHHHhhhhh-c----CCC-CEEEEcCCCCcch-HHHHHHHHh----cC-----cEEEEEeCCCCCCCCHHHHHHhc
Q 040741          130 SNNVSIKGVMHFY-K----DKK-RHVITTQTEHKCV-LDSCRHLQQ----EG-----FEITYLPVGADGIVNLDELRAAI  193 (457)
Q Consensus       130 a~~~al~~~~~~~-~----~~g-~~vi~~~~~h~~~-~~~~~~~~~----~G-----~~v~~v~~~~~~~~d~~~le~~i  193 (457)
                      |++++++.+..+. .    .+| ++||+.++.|.+. ..++.....    .+     ..+..++.+     |++++++++
T Consensus       134 A~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l  208 (433)
T 1z7d_A          134 ANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEEL  208 (433)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHh
Confidence            9999999865321 0    245 8888887666544 333333210    01     244555543     899999999


Q ss_pred             -CCCceEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCCC
Q 040741          194 -RPDTGLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGPK  263 (457)
Q Consensus       194 -~~~t~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~~  263 (457)
                       ++++++|+++++++++|.+.    ++++|.++|++||+++|+|++|+ +|..  .+  +.....+|++  |++|.+|+.
T Consensus       209 ~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G  286 (433)
T 1z7d_A          209 KDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVI--LLGKALSGG  286 (433)
T ss_dssp             TSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred             CCCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhcCCCCCEE--EECccccCC
Confidence             57889999998888899876    59999999999999999999997 3321  11  1112347877  566966632


Q ss_pred             --CceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CC
Q 040741          264 --GVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LD  338 (457)
Q Consensus       264 --G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~  338 (457)
                        .+|+++++++..+.+.+...+.       ..+.++..++++.++++.+.+  +...++.+++.+++++.|++.   ++
T Consensus       287 ~~~~G~v~~~~~~~~~l~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~  357 (433)
T 1z7d_A          287 HYPISAVLANDDIMLVIKPGEHGS-------TYGGNPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSK  357 (433)
T ss_dssp             SSCCEEEEECHHHHTTCCTTCCCC-------TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCT
T ss_pred             CCCeEEEEECHHHHhhhccccccc-------cCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence              3899999987666555422111       114566677777778877665  356777788888888887651   33


Q ss_pred             CeEEeCCCCCcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCC
Q 040741          339 GVVVNGSMERRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT  414 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~  414 (457)
                      .+....    ..+.++.+.+...  +...+...|  +||.+.++.                       .+.+||+++..+
T Consensus       358 ~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~l~~~Gv~v~~~~-----------------------~~~iRi~~~~~~  410 (433)
T 1z7d_A          358 IVRDVR----GKGLLCAIEFKNELVNVLDICLKLKENGLITRDVH-----------------------DKTIRLTPPLCI  410 (433)
T ss_dssp             TEEEEE----EETTEEEEEECTTTCCHHHHHHHHHHTTEECCEET-----------------------TTEEEECCCTTC
T ss_pred             CeEEEE----eeeeEEEEEEccChhHHHHHHHHHHHCCeEEecCC-----------------------CCEEEEECCcCC
Confidence            322211    1245566666532  345566655  688876531                       279999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHH
Q 040741          415 TEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       415 t~edid~~~~~l~~~~~~~~  434 (457)
                      +++|+++++++|+++++++.
T Consensus       411 t~e~i~~~l~~l~~~l~~~~  430 (433)
T 1z7d_A          411 TKEQLDECTEIIVKTVKFFD  430 (433)
T ss_dssp             CHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999988764

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.94  E-value=1.7e-26  Score=234.13  Aligned_cols=345  Identities=14%  Similarity=0.141  Sum_probs=220.2

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      +..|||+.+..+. +++.+++.+.+...  .     ..|+.  .+...+++++++++++.  ++++||+|||+|++++++
T Consensus        42 g~~ylD~~~~~~~-~~v~~a~~~~~~~~--~-----~~y~~--~~~~~~l~~~la~~~~~--~~v~~t~ggt~A~~~al~  109 (467)
T 1ax4_A           42 SAVYIDLLTDSGT-NAMSDHQWAAMITG--D-----EAYAG--SRNYYDLKDKAKELFNY--DYIIPAHQGRGAENILFP  109 (467)
T ss_dssp             GGCSEECSCSSSC-CCEEHHHHHHHHTC--C-----CCSSS--CHHHHHHHHHHHHHHCC--CEEEEESSHHHHHHHHHH
T ss_pred             CceeeecccCcCC-HHHHHHHHHHHhhc--c-----ccccc--CccHHHHHHHHHHHcCC--CcEEEcCCcHHHHHHHHH
Confidence            3458888666655 67777777765421  1     11111  14677899999999997  469999999999999999


Q ss_pred             HhhhhhcCCCCE---EEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----------CCCCCCHHHHHHhcCC----CceE
Q 040741          137 GVMHFYKDKKRH---VITTQTEHKCVLDSCRHLQQEGFEITYLPVG----------ADGIVNLDELRAAIRP----DTGL  199 (457)
Q Consensus       137 ~~~~~~~~~g~~---vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----------~~~~~d~~~le~~i~~----~t~l  199 (457)
                      ++..+...+|++   |+++.+.|..+..++..   .|.+++.++..          .++.+|+++|++++++    ++++
T Consensus       110 ~~~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~  186 (467)
T 1ax4_A          110 VLLKYKQKEGKAKNPVFISNFHFDTTAAHVEL---NGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVA  186 (467)
T ss_dssp             HHHHHHHHTTCCSSCEEEESSCCHHHHHHHHH---TTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEE
T ss_pred             HHHHhhccCCCccceEEEeccccchhhHHHhc---cCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeE
Confidence            987211118888   88884333444444444   38888776532          1457899999999974    6899


Q ss_pred             EEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc-----------CCCcccCCC------CcccEEEecccc
Q 040741          200 ISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL-----------GKIPVDVEK------WNVSLMSLSGHK  258 (457)
Q Consensus       200 i~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~-----------g~~~~~~~~------~~~Di~~~s~~K  258 (457)
                      |++++++|++ |.+.+   +++|+++|++||+++|+|+++++           +....++..      ..+|++++|+||
T Consensus       187 vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK  266 (467)
T 1ax4_A          187 IVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKK  266 (467)
T ss_dssp             EEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTS
T ss_pred             EEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccc
Confidence            9999999999 77766   67899999999999999998765           222222211      136899999999


Q ss_pred             ccCCC-CceEEEEe-c-CCCcccccccc--CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          259 IYGPK-GVGALYMR-R-RPRIRVEPLIN--GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       259 ~~g~~-G~G~l~~~-~-~~~~~~~~~~~--~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      .+|++ | |+++.+ + +..+++.....  ++.    ...+..+...+.++..+++...+  +...++..++.+++.+.|
T Consensus       267 ~~g~~~G-g~~~~~d~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~l~~~L  339 (467)
T 1ax4_A          267 DPLLNIG-GLVAIRDNEEIFTLARQRCVPMEGF----VTYGGLAGRDMAAMVQGLEEGTE--EEYLHYRIGQVKYLGDRL  339 (467)
T ss_dssp             TTCCSSC-EEEEESSCHHHHHHHHHHHHHHTCS----TTTTTCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcc-eEEEeCCHHHHHHHHHhhccccccc----cccCCccchHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHH
Confidence            88865 4 677666 3 44444432221  111    12234444444444434433221  223444456778888888


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEE-------Ec--cccchHHHhcc---cCeEecc-cCccCCCCCChhHHHHHcCCCcc
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLS-------FA--YVEGESLLMGL---KEVAVSS-GSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~l---~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      .+  +++.+..+. .  ...+.+.       ++  ..+..++...|   +||.+.+ |.++....  +     ..|....
T Consensus       340 ~~--~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~--~-----~~g~~~~  407 (467)
T 1ax4_A          340 RE--AGIPIQYPT-G--GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRD--P-----ATGEQKH  407 (467)
T ss_dssp             HH--TTCCBCSSC-C--SSEEEEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC--T-----TTCSBCC
T ss_pred             Hh--CCCCcccCC-C--ceEEEEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccc--c-----ccccccc
Confidence            87  466655432 1  2334444       22  12345566655   5898887 54321100  0     0011111


Q ss_pred             CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 040741          401 MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       401 ~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ...+.|||+++.. +|++|+++++++|++++++++.
T Consensus       408 ~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~~~~~  443 (467)
T 1ax4_A          408 ADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFAT  443 (467)
T ss_dssp             CSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTT
T ss_pred             cccceEEEecccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            2347999999954 8999999999999999987654

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.94  E-value=3e-26  Score=231.16  Aligned_cols=324  Identities=15%  Similarity=0.031  Sum_probs=218.5

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhh-ccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CCC-----CCcEEE--eCCh
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLS-RYGNPHSRTHLFGWESEVAVETARSQIADLI-GAS-----PKEIIF--TSGA  127 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~~-----~~~i~~--t~g~  127 (457)
                      .-+|+|+.+++++.+++.+++.+...+ ..++.. ..+.      ....++++.+++++ |.+     ++++++  |+||
T Consensus        56 ~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~-Y~~~------~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~gg  128 (448)
T 3meb_A           56 VGAYRDESGKPWILPAVKEAEAIISSDLSKYNKE-YPPV------AGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSG  128 (448)
T ss_dssp             SCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCS-CCCT------TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHH
T ss_pred             cccccCCCCCEechHHHHHHHHHHhhcccCCCCC-CCCC------cchHHHHHHHHHHhcCCCccccCcCcEEEEECCcH
Confidence            335778888888999999998776521 111111 1111      23567888888887 876     678999  9999


Q ss_pred             HHHHHHH--HHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeC-CC--CCCCCHHHHHHhcC---CCce
Q 040741          128 TESNNVS--IKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPV-GA--DGIVNLDELRAAIR---PDTG  198 (457)
Q Consensus       128 T~a~~~a--l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~-~~--~~~~d~~~le~~i~---~~t~  198 (457)
                      |+|++++  +.++.    .+|++|+++.++|.++...++ .++..|++++.++. +.  ++.+|+++++++++   ++++
T Consensus       129 t~al~l~~~~~~~~----~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~  204 (448)
T 3meb_A          129 TGSLHIGFEFLHLW----MPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSI  204 (448)
T ss_dssp             HHHHHHHHHHHHHH----CTTCCEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCE
T ss_pred             HHHHHHHHHHHHHh----CCCCEEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHHHHHHhCCCCcE
Confidence            9999884  44455    789999999999999988776 11134999999998 55  37899999999997   4688


Q ss_pred             EEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-cc-----cC----CCCcccEEEeccccccCCCC-
Q 040741          199 LISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-PV-----DV----EKWNVSLMSLSGHKIYGPKG-  264 (457)
Q Consensus       199 li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-~~-----~~----~~~~~Di~~~s~~K~~g~~G-  264 (457)
                      ++++++++||||.+.+   +++|+++|++||+++++|++|..... ..     .+    ......+++.|+||.||+.| 
T Consensus       205 ~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~  284 (448)
T 3meb_A          205 FLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGE  284 (448)
T ss_dssp             EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG
T ss_pred             EEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccc
Confidence            9999999999999988   55699999999999999999863322 11     01    11123477899999988766 


Q ss_pred             -ceEE--EE--------ec-----CCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHH
Q 040741          265 -VGAL--YM--------RR-----RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRI  322 (457)
Q Consensus       265 -~G~l--~~--------~~-----~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~  322 (457)
                       +|++  +.        .+     +....+.....       .....++.....++..++...      .+.+++..+++
T Consensus       285 RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~  357 (448)
T 3meb_A          285 RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR-------KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARI  357 (448)
T ss_dssp             CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-------TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             cceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-------cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence             8887  55        32     22222221111       112244445555554454322      13467888899


Q ss_pred             HHHHHHHHHHHhhcC--CC------eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          323 TALHDRLLNGIKEKL--DG------VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       323 ~~~~~~l~~~l~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      +++++++.+.|.+ +  ++      +.+..+.    .+  .+.+.+.+.+.+...+  +||.+.+|.             
T Consensus       358 ~~~r~~l~~~L~~-~~~~~~~~~~~~~~~~~~----~g--~~~~~~~~~~~~~~ll~~~gV~v~~G~-------------  417 (448)
T 3meb_A          358 HRMRSLLHASLAK-RKTPGPGSKGTWDHILTA----IG--MFTFTGLTPEHVDYLKEKWSIYLVKAG-------------  417 (448)
T ss_dssp             HHHHHHHHHHHHH-TTCCCSTTTCCCTHHHHC----CS--SEEECCCCHHHHHHHHHHHCEEECSGG-------------
T ss_pred             HHHHHHHHHHHHh-hCCCCcCcccccceeCCC----ce--EEEecCCCHHHHHHHHHhCCEEEeCCC-------------
Confidence            9999999999988 5  33      2222111    12  1233334433333332  588887653             


Q ss_pred             HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                                   .||+++.. +.++|++++++|++++++
T Consensus       418 -------------gRis~a~~-~~~~i~~~~~~l~~~l~~  443 (448)
T 3meb_A          418 -------------GRMSMCGL-TESNCDYVAEAIHDAVTK  443 (448)
T ss_dssp             -------------GEEEGGGC-CTTTHHHHHHHHHHHHHH
T ss_pred             -------------cEEEEecC-CHHHHHHHHHHHHHHHHh
Confidence                         28998754 457799999999999874

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=99.94  E-value=9.3e-25  Score=218.42  Aligned_cols=326  Identities=15%  Similarity=0.169  Sum_probs=220.6

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.+.      +..+|++.+++.+.+... .+...   .  + ..+...++++++++++|.  ++++|++|||+
T Consensus        55 ~g~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~---~--~-~~~~~~~l~~~la~~~g~--~~v~~~~ggte  125 (420)
T 2pb2_A           55 QGKEYIDFAGGIAVTALGHCHPALVEALKSQGETL-WHTSN---V--F-TNEPALRLGRKLIDATFA--ERVLFMNSGTE  125 (420)
T ss_dssp             TCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC-CCCCT---T--S-CCHHHHHHHHHHHHHSSC--SEEEEESSHHH
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhc-ccccC---c--c-CCHHHHHHHHHHHhhCCC--CeEEEeCCHHH
Confidence            45578888654      245899999999998653 22111   1  1 235778899999999984  56999999999


Q ss_pred             HHHHHHHHhhhhhc---CCC-CEEEEcCCCCcc-hHHHHHHHH----hcCc-----EEEEEeCCCCCCCCHHHHHHhcCC
Q 040741          130 SNNVSIKGVMHFYK---DKK-RHVITTQTEHKC-VLDSCRHLQ----QEGF-----EITYLPVGADGIVNLDELRAAIRP  195 (457)
Q Consensus       130 a~~~al~~~~~~~~---~~g-~~vi~~~~~h~~-~~~~~~~~~----~~G~-----~v~~v~~~~~~~~d~~~le~~i~~  195 (457)
                      |++++++.+..+..   .++ ++||+..+.|.+ ...+.....    ..++     .+..++.+     |+++|++++++
T Consensus       126 A~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~  200 (420)
T 2pb2_A          126 ANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDD  200 (420)
T ss_dssp             HHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhcc
Confidence            99999998873211   155 478877665544 444443321    0111     25556543     89999999999


Q ss_pred             CceEEEEeccccccccc----cChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC-CCc
Q 040741          196 DTGLISVMAVNNEIGVI----QPMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP-KGV  265 (457)
Q Consensus       196 ~t~li~i~~~~~~~G~~----~~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~-~G~  265 (457)
                      ++++|++++++|++|.+    .++++|.++|++||+++|+|++|+ ++..  .+  +.....+|++  |++|.+|+ .++
T Consensus       201 ~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~i  278 (420)
T 2pb2_A          201 HTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPV  278 (420)
T ss_dssp             TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCC
T ss_pred             CceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcHHHHHhcCCCCCeE--EecccccCCCce
Confidence            99999999999888863    348999999999999999999996 3211  11  1112346877  45696653 248


Q ss_pred             eEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEE
Q 040741          266 GALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGVVV  342 (457)
Q Consensus       266 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~  342 (457)
                      |+++++++..+.+.+...+.       ..+.++..++++.++++.+.+  +...++.+++.+++.+.|++.   ++.+..
T Consensus       279 G~~~~~~~l~~~l~~~~~~~-------t~~~~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~  349 (420)
T 2pb2_A          279 SAMLTTQEIASAFHVGSHGS-------TYGGNPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSD  349 (420)
T ss_dssp             EEEEECHHHHTTCC----CC-------EECCCHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             EEEEEhHHHHHhhcCCCcCc-------ccCcCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence            99999887555554321111       114566677777777776654  567778888888888888761   243322


Q ss_pred             eCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741          343 NGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA  417 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e  417 (457)
                      ..    ..+.++.+.+...   +..++...|  +||.+.++.                       .+.+||+++..++++
T Consensus       350 ~~----~~g~~~~v~~~~~~~~~~~~l~~~l~~~Gi~v~~~~-----------------------~~~iRl~~~~~~t~e  402 (420)
T 2pb2_A          350 IR----GMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAG-----------------------ADVMRFAPSLVVEEA  402 (420)
T ss_dssp             EE----EETTEEEEEECGGGTTCHHHHHHHHHHTTEECEESS-----------------------TTEEEECCCTTCCHH
T ss_pred             EE----ecceEEEEEECCCchHHHHHHHHHHHHCCCEEEeCC-----------------------CCEEEEECCCCCCHH
Confidence            21    1245556666532   345566655  688877642                       279999999889999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQVEKL  433 (457)
Q Consensus       418 did~~~~~l~~~~~~~  433 (457)
                      |+++++++|+++++++
T Consensus       403 ei~~~~~~l~~~l~~~  418 (420)
T 2pb2_A          403 DIHEGMQRFAQAVGKV  418 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998765

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.94  E-value=1.7e-25  Score=223.77  Aligned_cols=338  Identities=18%  Similarity=0.179  Sum_probs=217.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      +.+.+++++++.+++.+.+...+  ++|..+ +..+....+...+ +++.+++++|.++. .++++|||+|+..+++++.
T Consensus        38 ~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~v~~~~Gs~a~~~al~~~~  115 (425)
T 3ecd_A           38 IASENIVSRAVLDAQGSVLTNKYAEGYPGKR-YYGGCEFADEVEALAIERVKRLFNAGHA-NVQPHSGAQANGAVMLALA  115 (425)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSEE-ECCCSSHHHHHHHHHHHHC
T ss_pred             ecccCCCCHHHHHHHhhhhhcccccCCCcch-hcCCChHHHHHHHHHHHHHHHHhCCCCc-eeecCchHHHHHHHHHHcc
Confidence            44556779999999999886544  333321 1112111123333 55889999998752 3568999999999999887


Q ss_pred             hhhcCCCCEEEEcCCCCcchH-HHHHH-HHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccccccccCh
Q 040741          140 HFYKDKKRHVITTQTEHKCVL-DSCRH-LQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~-~~~~~-~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l  215 (457)
                          ++|++|++..++|.+.. ..... ....+..++.++.+ .++.+|+++++++++ +++++|++++++|  |...++
T Consensus       116 ----~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~--~~~~~l  189 (425)
T 3ecd_A          116 ----KPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAY--PRKLDF  189 (425)
T ss_dssp             ----CTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHHHCCSEEEEECSCC--CSCCCH
T ss_pred             ----CCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhhcCCcEEEEccccC--CCcCCH
Confidence                89999999999998832 22221 11223466667666 447899999999997 5889999987776  678899


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCc----ccCCCCcccEEEecccccc-CCCCceEEEEecC-CCccccccccCCcccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIP----VDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRR-PRIRVEPLINGGGQER  289 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~  289 (457)
                      ++|.++|++||+++|+|++|+.|...    ..... .+|++++|+||.+ |+. +|+++.+++ ..+.+......+    
T Consensus       190 ~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~-~~di~~~s~sK~l~g~~-~g~~~~~~~~~~~~~~~~~~~~----  263 (425)
T 3ecd_A          190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVE-HAHVVTSTTHKTLRGPR-GGFVLTNDEEIAKKINSAVFPG----  263 (425)
T ss_dssp             HHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGG-TCSEEEEESSGGGCCCS-CEEEEESCHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHcCCEEEEECcChHhhhhcccccCchh-cCcEEEecCCcccCCCC-cEEEEeCCHHHHHHHHhhhCcc----
Confidence            99999999999999999998654331    11111 3789999999955 565 599998753 333333322221    


Q ss_pred             ccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchHH
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGESL  366 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  366 (457)
                        ..++++...+.++..++.... ++++...++.+++.+++.+.|.+  .++.+..+..  ...++.+.+.  ..+...+
T Consensus       264 --~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~--~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~  337 (425)
T 3ecd_A          264 --LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA--GGVDLVTGGT--DNHLLLVDLRPKGLKGAQV  337 (425)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSC--SSSEEEEECGGGTCCHHHH
T ss_pred             --ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--CCCeeccCCC--CceEEEEEeCCCCCCHHHH
Confidence              123566666666666665543 46788899999999999999998  5777765321  1344445554  2344555


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC----CCCCHHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG----RFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~----~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ...|  +||.+..+.....  .           ......+.+||+++    ..++++++++++++|++++++.
T Consensus       338 ~~~l~~~gi~v~~~~~p~~--~-----------~~~~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~  397 (425)
T 3ecd_A          338 EQALERAGITCNKNGIPFD--P-----------EKPTITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL  397 (425)
T ss_dssp             HHHHHHTTEECEECCCTTC--S-----------SCTTTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCEecccccCCC--C-----------CCCCCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence            5555  5898885432110  0           01122368999944    4445999999999999999876

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=99.94  E-value=2e-25  Score=225.21  Aligned_cols=341  Identities=14%  Similarity=0.097  Sum_probs=223.7

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++      +..++++.+++.+.+....  .+. ..  + ...+...++++.++++++.++++++|++|||+
T Consensus        48 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~-~~--~-~~~~~~~~l~~~la~~~~~~~~~v~~~~ggse  121 (449)
T 3a8u_X           48 KGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSP-GF--Q-YGHPLSFQLAEKITDLTPGNLNHVFFTDSGSE  121 (449)
T ss_dssp             TCCEEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCC-SS--S-CCCHHHHHHHHHHHTTSSTTEEEEEEESSHHH
T ss_pred             CCCEEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Ccc-cc--c-cCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence            44568887522      2348999999999986532  111 00  1 11246778999999999877778999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEEcCCCCcc-hHHHHHHHH----hcC-----cEEEEEeCCCCC-----CCC-----
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKC-VLDSCRHLQ----QEG-----FEITYLPVGADG-----IVN-----  185 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~-~~~~~~~~~----~~G-----~~v~~v~~~~~~-----~~d-----  185 (457)
                      |++++++++..+..    .++++||+..+.|.+ ...++....    ..+     ..+..++.+...     .+|     
T Consensus       122 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~  201 (449)
T 3a8u_X          122 CALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGG  201 (449)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHH
Confidence            99999998774321    157888886665554 444444321    011     134555544211     146     


Q ss_pred             ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhh-hcCCCc--ccCC--CCcc
Q 040741          186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQ-ALGKIP--VDVE--KWNV  249 (457)
Q Consensus       186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~-~~g~~~--~~~~--~~~~  249 (457)
                         +++|+++++    +++++|+++++++++|.+.|    +++|.++|++||+++|+|++| ++|...  ..+.  ...+
T Consensus       202 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~  281 (449)
T 3a8u_X          202 IALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTP  281 (449)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCC
Confidence               999999987    56788888888888999888    999999999999999999999 465321  1111  2246


Q ss_pred             cEEEeccccccCC--CCceEEEEecCCCccccccccC---CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLING---GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITA  324 (457)
Q Consensus       250 Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~---~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~  324 (457)
                      |++  |++|.+++  -.+|+++++++..+.+......   .....+ ...+.++..++++.++++.+.+  +...++.++
T Consensus       282 di~--s~sK~l~~G~~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~-~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~  356 (449)
T 3a8u_X          282 DLM--CIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHG-YTYSAHPVACAAGLAALCLLQK--ENLVQSVAE  356 (449)
T ss_dssp             SEE--EECGGGGTTSSCCEEEEEEHHHHHHHHTCSSCTTSCSSCCC-CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHH
T ss_pred             CEE--EEcccccCCCCceEEEEECHHHHHHhhccCccccccccccc-CCCcccHHHHHHHHHHHHHHHh--cCHHHHHHH
Confidence            876  55696664  1289999987655544332100   000001 1224566677777778887665  356778888


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc-c-----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE-G-----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      +.+++++.|.+ ++.+.++.. ....+.++.+.+.... .     .++...|  +||.+.++.                 
T Consensus       357 ~~~~l~~~L~~-l~~~~~~~~-~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----------------  417 (449)
T 3a8u_X          357 VAPHFEKALHG-IKGAKNVID-IRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGG-----------------  417 (449)
T ss_dssp             HHHHHHHHHHT-TTTSTTEEE-EEEETTEEEEEECCBTTBSSHHHHHHHHHHHHHTEECEEET-----------------
T ss_pred             HHHHHHHHHHH-HhcCCCeEE-EeeeEEEEEEEEecCcccccccHHHHHHHHHHCCcEEecCC-----------------
Confidence            88999988877 432211110 0112455566665321 1     1455555  588876541                 


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                             +.+||+++..++++|+++++++|+++++++
T Consensus       418 -------~~iRis~~~~~t~~~i~~~l~~l~~~l~~~  447 (449)
T 3a8u_X          418 -------DTLQFGPTFNSKPQDLDRLFDAVGEVLNKL  447 (449)
T ss_dssp             -------TEEEECCCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred             -------CEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence                   689999998999999999999999998753

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.94  E-value=1.2e-25  Score=227.35  Aligned_cols=337  Identities=14%  Similarity=0.104  Sum_probs=220.2

Q ss_pred             CCcEEecCCCCC---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      .+..|||+.++.   ++++++.+++...      .     ..++  ..+...++++.++++++.+  ++++|+|||+|++
T Consensus        40 ~~~~ylD~~~~~~~~~~~~~~~~a~~~~------~-----~~y~--~~~~~~~l~~~la~~~~~~--~~~~~~~gt~a~~  104 (456)
T 2ez2_A           40 SKDIYIDLLTDSGTNAMSDKQWAGMMMG------D-----EAYA--GSENFYHLERTVQELFGFK--HIVPTHQGRGAEN  104 (456)
T ss_dssp             GGGCSEECSCSSSCCCCCHHHHHHHTTC------C-----CCSS--SCHHHHHHHHHHHHHHCCS--EEEEESSHHHHHH
T ss_pred             cccceeeeccccCCccCCHHHHHHhhcc------h-----hhcc--cChhHHHHHHHHHHHhCCC--cEEEeCCcHHHHH
Confidence            344578876543   6778888887621      1     0111  1256788999999999975  5999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCC-cchHHHHHHHHhcCcEEEEEeCCC----------CCCCCHHHHHHhcCCCc----
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEH-KCVLDSCRHLQQEGFEITYLPVGA----------DGIVNLDELRAAIRPDT----  197 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h-~~~~~~~~~~~~~G~~v~~v~~~~----------~~~~d~~~le~~i~~~t----  197 (457)
                      ++++++.    ++||  +++.++| .++..++...   |++++.++++.          ++.+|+++|++++++++    
T Consensus       105 ~al~~l~----~~gd--i~~~~~~~~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~  175 (456)
T 2ez2_A          105 LLSQLAI----KPGQ--YVAGNMYFTTTRYHQEKN---GAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENI  175 (456)
T ss_dssp             HHHHHHC----CTTC--EEEESSCCHHHHHHHHHT---TCEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGE
T ss_pred             HHHHHhC----CCCC--EeccccccchhHHHHHHc---CCEEEEecccccccccccccccCCCCHHHHHHHHHhccccce
Confidence            9999986    7888  6666777 7766666554   99999998763          25789999999998765    


Q ss_pred             eEEEEecccc-ccccccC---hHHHHHHHHhcCCcEEEehhhhcC---------CCcccCC--------CCcccEEEecc
Q 040741          198 GLISVMAVNN-EIGVIQP---MEEIGQICKEFKIPFHTDAAQALG---------KIPVDVE--------KWNVSLMSLSG  256 (457)
Q Consensus       198 ~li~i~~~~~-~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g---------~~~~~~~--------~~~~Di~~~s~  256 (457)
                      ++|++++++| ++|.+.+   +++|.++|++||+++|+|++|+.|         ....+..        ....|++++|+
T Consensus       176 ~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~  255 (456)
T 2ez2_A          176 AYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSG  255 (456)
T ss_dssp             EEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEET
T ss_pred             eEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhhcccCCEEEEeC
Confidence            8999998988 9999887   999999999999999999999874         1111111        01358888888


Q ss_pred             ccccCCCCceEEEE-ecCCCccccccccC-CccccccccCCCChhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKGVGALYM-RRRPRIRVEPLING-GGQERGIRSGTLPTPLIVGFGSACEIAKKEM-DYDHKRITALHDRLLNGI  333 (457)
Q Consensus       257 ~K~~g~~G~G~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~~~~~~-~~~~~~~~~~~~~l~~~l  333 (457)
                      +|+++++.+|+++. +++..+++...... .+.   ...+..+...+.++  ++... +.+ +...++.+++.+++.+.|
T Consensus       256 kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~a~--a~~~~-~~~~~~~~~~~~~~~~~l~~~L  329 (456)
T 2ez2_A          256 KKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGM---PSYGGLAGRDMEAM--AIGLR-EAMQYEYIEHRVKQVRYLGDKL  329 (456)
T ss_dssp             TTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC---TTTTTCCHHHHHHH--HHHHH-HHTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCceeEEEECCHHHHHHHHHHHhhccCc---ccccCcchhHHHHH--HHHHH-HHhHHHHHHHHHHHHHHHHHHH
Confidence            88766433688888 44444444332211 110   01112233333321  12111 233 466677778888999999


Q ss_pred             hhcCCCeEEeCCCCCcccceEEEEEc----cccchHH-----Hhcc---cCeEecc-cCccCCCCCChhHHHHHcCCCcc
Q 040741          334 KEKLDGVVVNGSMERRYIGNLNLSFA----YVEGESL-----LMGL---KEVAVSS-GSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~l---~~i~~~~-g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      .+ . ++.+..+..   ...+.+.+.    +.+..++     ...|   +||.+.+ |..|.+.  .+.     +|....
T Consensus       330 ~~-~-g~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~-----~g~~~~  397 (456)
T 2ez2_A          330 KA-A-GVPIVEPVG---GHAVFLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGR--NNV-----TGEHHR  397 (456)
T ss_dssp             HH-T-TCCBCSSCC---SSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHSEECEEESHHHHCB--CTT-----TCSBCC
T ss_pred             hc-C-CCccccCCC---ceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcCeeeeccccccccc--Ccc-----cccccc
Confidence            88 4 665554321   334444442    2333444     4444   4777544 5443220  110     011111


Q ss_pred             CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       401 ~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~  434 (457)
                      ...+.|||+++.. ++++|+++++++|++++++.+
T Consensus       398 ~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~~~~  432 (456)
T 2ez2_A          398 PKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKE  432 (456)
T ss_dssp             CSCCEEEEECCTTTCCHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            2237899999986 799999999999999988654

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.94  E-value=7.6e-27  Score=231.43  Aligned_cols=313  Identities=12%  Similarity=0.040  Sum_probs=213.9

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCcEEE--eCChHHHHHHHHHHhhh
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKEIIF--TSGATESNNVSIKGVMH  140 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~i~~--t~g~T~a~~~al~~~~~  140 (457)
                      ..++++++.+++.+.+...  .    .+.|+.  .....++++.+++++ +.  +++++++  |+|||+|++++++.+..
T Consensus        42 ~~~~~~~v~~a~~~~~~~~--~----~~~y~~--~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~  113 (394)
T 2ay1_A           42 HTPIMRAVHAAEQRMLETE--T----TKTYAG--LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARM  113 (394)
T ss_dssp             CCCCCHHHHHHHHHHHHHC--C----CCCCCC--SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHH
T ss_pred             CccCcHHHHHHHHHhcCCc--c----cCCCCC--CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHh
Confidence            3467899999999887541  1    111111  123567888888887 55  6778999  99999999999988762


Q ss_pred             hhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC---CceEEEEeccccccccccC-
Q 040741          141 FYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP---DTGLISVMAVNNEIGVIQP-  214 (457)
Q Consensus       141 ~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i~~~~~~~G~~~~-  214 (457)
                      +  .+|++|++..+.|.++...++..   |.+++.++.+  .++.+|++++++++++   +++++++++++||+|.+.| 
T Consensus       114 ~--~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~  188 (394)
T 2ay1_A          114 A--NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTL  188 (394)
T ss_dssp             H--CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCH
T ss_pred             c--CCCCEEEEcCCCChhHHHHHHHc---CCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCH
Confidence            2  48999999999999988877766   9999999985  5677899999999865   3678888999999999987 


Q ss_pred             --hHHHHHHHHhcCCcEEEehhhhcCCCc-------cc-CCCCc-ccEEEeccccccCCCC--ceEEEE---ecCCCccc
Q 040741          215 --MEEIGQICKEFKIPFHTDAAQALGKIP-------VD-VEKWN-VSLMSLSGHKIYGPKG--VGALYM---RRRPRIRV  278 (457)
Q Consensus       215 --l~~i~~l~~~~~v~li~D~a~~~g~~~-------~~-~~~~~-~Di~~~s~~K~~g~~G--~G~l~~---~~~~~~~~  278 (457)
                        +++|.++|++||+++|+|++|+.....       +. +...+ .++++.|++|.+|++|  +|++++   +++..+++
T Consensus       189 ~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~~~~l  268 (394)
T 2ay1_A          189 DQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCADAATRELA  268 (394)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSSHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCCccceEEEEeCCHHHHHHH
Confidence              567899999999999999999854331       11 11112 3467889999888666  699998   44332222


Q ss_pred             cccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC---CeEEeCCCCCc
Q 040741          279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD---GVVVNGSMERR  349 (457)
Q Consensus       279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~~~  349 (457)
                      ......   ......++++.....++..+++..      .+.+++..++++++++++.+.|++ +.   ++.+..+..  
T Consensus       269 ~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~--  342 (394)
T 2ay1_A          269 QGAMAF---LNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFVAEHR--  342 (394)
T ss_dssp             HHHHHH---HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHHHHCC--
T ss_pred             HHHHHH---HHhhhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCeeEEcCCc--
Confidence            211110   000112234555556666666543      245778888899999999999887 42   243332111  


Q ss_pred             ccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          350 YIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       350 ~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                       +.++  .+. .+.+.+...+  +||.+.+                           .+||+++ .++++++++++++|+
T Consensus       343 -g~~~--~~~-~~~~~~~~~l~~~gi~v~~---------------------------~~Ris~~-~~~~~~i~~~~~~l~  390 (394)
T 2ay1_A          343 -GMFS--RLG-ATPEQVKRIKEEFGIYMVG---------------------------DSRINIA-GLNDNTIPILARAII  390 (394)
T ss_dssp             -SSEE--ECC-CCHHHHHHHHHHHCEECCT---------------------------TCEEEGG-GCCTTTHHHHHHHHH
T ss_pred             -eEEE--eeC-CCHHHHHHHHHhCCEEecC---------------------------CCeEEee-cCCHhhHHHHHHHHH
Confidence             2222  222 2334444444  5777652                           3599988 468999999999998


Q ss_pred             HH
Q 040741          428 KQ  429 (457)
Q Consensus       428 ~~  429 (457)
                      ++
T Consensus       391 ~~  392 (394)
T 2ay1_A          391 EV  392 (394)
T ss_dssp             HH
T ss_pred             Hc
Confidence            75

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=99.94  E-value=9.8e-25  Score=219.39  Aligned_cols=327  Identities=15%  Similarity=0.146  Sum_probs=222.1

Q ss_pred             CCCcEEecCCCC---CC---CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT---TP---VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~---~~---~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+..|+|+.+.   ..   .+|++.+++.+.+.... +..+ .  +   ..+...++++.+++++|.  ++++|++||+
T Consensus        73 ~~g~~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~~-~~~~-~--~---~~~~~~~l~~~la~~~g~--~~v~~~~sGs  143 (439)
T 2oat_A           73 VEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLT-LTSR-A--F---YNNVLGEYEEYITKLFNY--HKVLPMNTGV  143 (439)
T ss_dssp             TTCCEEEESSGGGGTTTTCBTCHHHHHHHHHHHTTCS-CCCT-T--S---EESSHHHHHHHHHHHHTC--SEEEEESSHH
T ss_pred             CCCCEEEEccCCcccccCCCCCHHHHHHHHHHHHhcC-cccC-c--c---CCHHHHHHHHHHHHhcCC--CEEEEeCCHH
Confidence            345578887662   22   78999999999986532 2111 1  1   124677889999999984  5699999999


Q ss_pred             HHHHHHHHHhhhhh-c----CCC-CEEEEcCCCC-cchHHHHHHHH----hcC-----cEEEEEeCCCCCCCCHHHHHHh
Q 040741          129 ESNNVSIKGVMHFY-K----DKK-RHVITTQTEH-KCVLDSCRHLQ----QEG-----FEITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~-~----~~g-~~vi~~~~~h-~~~~~~~~~~~----~~G-----~~v~~v~~~~~~~~d~~~le~~  192 (457)
                      +|++++++.+..+. .    .+| ++||+.++.| .....++....    ..|     ..+..++.+     |+++++++
T Consensus       144 eA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~  218 (439)
T 2oat_A          144 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERA  218 (439)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHH
Confidence            99999999876421 0    234 7887776655 44454443221    011     356666654     89999999


Q ss_pred             c-CCCceEEEEecccccccccc----ChHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC
Q 040741          193 I-RPDTGLISVMAVNNEIGVIQ----PMEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       193 i-~~~t~li~i~~~~~~~G~~~----~l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~  262 (457)
                      + ++++++|+++++++++|.+.    ++++|.++|++||+++|+|++|. +|..  .+  +.....+|++  |++|.+|+
T Consensus       219 l~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~  296 (439)
T 2oat_A          219 LQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIV--LLGKALSG  296 (439)
T ss_dssp             TTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGT
T ss_pred             hCCCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhCCCCcEE--EecccccC
Confidence            9 47788999998888899876    59999999999999999999995 3321  11  2222346877  66696654


Q ss_pred             --CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          263 --KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       263 --~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                        -.+|+++++++..+.+.+...+.      . .+.++..++++.++++.+.+  +...++.+++.+++++.|++ + ++
T Consensus       297 G~~~~G~v~~~~~~~~~l~~~~~~~------t-~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~-l-~~  365 (439)
T 2oat_A          297 GLYPVSAVLCDDDIMLTIKPGEHGS------T-YGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-L-PS  365 (439)
T ss_dssp             TSSCCEEEEECHHHHTTSCTTSSCC------S-STTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTT-S-CT
T ss_pred             CCCCeEEEEECHHHHhccCCCCccc------C-CCcCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH-h-cC
Confidence              23899999987666554422211      1 14566667777778877765  36778889999999999988 4 22


Q ss_pred             EEeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          341 VVNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                      .+... ....+.++.+.+...   +..++...+  +||.+.++                       ..+.+||+++..++
T Consensus       366 ~~~~~-~~~~g~~~~v~l~~~~~~~~~~l~~~l~~~Gv~v~~~-----------------------~~~~iRi~~~~~~t  421 (439)
T 2oat_A          366 DVVTA-VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIK  421 (439)
T ss_dssp             TTEEE-EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECCBS-----------------------SSSEEEECCCTTCC
T ss_pred             CCcEE-EEeeeeEEEEEEecCccHHHHHHHHHHHHCCeEEecC-----------------------CCCEEEEECccCCC
Confidence            11110 011245555666532   345566655  68877642                       12799999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEK  432 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~  432 (457)
                      ++|+++++++|++++++
T Consensus       422 ~e~i~~~l~~l~~~l~~  438 (439)
T 2oat_A          422 EDELRESIEIINKTILS  438 (439)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999998763

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.94  E-value=2.4e-25  Score=220.72  Aligned_cols=305  Identities=13%  Similarity=0.092  Sum_probs=210.9

Q ss_pred             chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH--HHhcCc
Q 040741           94 LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH--LQQEGF  171 (457)
Q Consensus        94 ~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~--~~~~G~  171 (457)
                      .|+....+...++++.++++.|.+  .+++++||++|+.+ +..+.    ++|++|++..+.|.+....+..  ++..|.
T Consensus        60 ~y~r~~~p~~~~l~~~la~l~g~~--~~~~~~sG~~Ai~~-~~~l~----~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~  132 (400)
T 3nmy_A           60 EYSRTHNPTRFAYERCVAALEGGT--RAFAFASGMAATST-VMELL----DAGSHVVAMDDLYGGTFRLFERVRRRTAGL  132 (400)
T ss_dssp             CBTTTCCHHHHHHHHHHHHHHTCS--EEEEESSHHHHHHH-HHTTS----CTTCEEEEESSCCHHHHHHHHHTHHHHHCC
T ss_pred             ccccCCCHHHHHHHHHHHHHhCCC--CEEEecCHHHHHHH-HHHHc----CCCCEEEEeCCCchHHHHHHHHhhHhhcCe
Confidence            334444578889999999999976  48888888999987 55566    7999999999999977766543  455699


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++++++.+     |++++++++++++++|++++++||+|.+.|+++|+++|++||+++|+|++++.+... ....+++|+
T Consensus       133 ~~~~v~~~-----d~~~l~~~i~~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~-~~~~~g~di  206 (400)
T 3nmy_A          133 DFSFVDLT-----DPAAFKAAIRADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQ-RPLSLGADL  206 (400)
T ss_dssp             EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHC-CGGGGTCSE
T ss_pred             EEEEECCC-----CHHHHHHHhccCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccC-ChhhcCCcE
Confidence            99999876     899999999999999999999999999999999999999999999999999854321 112347899


Q ss_pred             EEeccccccCCC--Cc-e-EEEEec-CCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPK--GV-G-ALYMRR-RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       252 ~~~s~~K~~g~~--G~-G-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      ++.|++|++|..  .+ | ++++++ +..+++.......       ....++.....+...    .+.+..+.++..+++
T Consensus       207 v~~S~sK~l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~~-------g~~~~~~~a~~~l~~----l~~l~~r~~~~~~~a  275 (400)
T 3nmy_A          207 VVHSATKYLNGHSDMVGGIAVVGDNAELAEQMAFLQNSI-------GGVQGPFDSFLALRG----LKTLPLRMRAHCENA  275 (400)
T ss_dssp             EEEETTTTTTCSSSCCCEEEEECSCHHHHHHHHHHHHHH-------CCBCCHHHHHHHHHH----HTTHHHHHHHHHHHH
T ss_pred             EEecCccccCCCCCcceeEEEEeCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHh----HhHHHHHHHHHHHHH
Confidence            999999966533  23 5 444433 2333333222111       113333333222222    234567778888999


Q ss_pred             HHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc--cchHHHhcc--cCeEecccCccC----CC
Q 040741          327 DRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACT----SA  384 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~----~~  384 (457)
                      +++.+.|++ .|.+..+..+.              ...+.++.+.+++.  ....++..+  .+++++.|..++    +.
T Consensus       276 ~~l~~~L~~-~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~G~~~sl~~~p~  354 (400)
T 3nmy_A          276 LALAQWLET-HPAIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGFDAAKRFCEKTELFTLAESLGGVESLVNHPA  354 (400)
T ss_dssp             HHHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHHCSSSEECSCCCSSSCEEECTT
T ss_pred             HHHHHHHHc-CCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcHHHHHHHHHcCCcceEecCCCCCcceeeCcc
Confidence            999999998 78875442221              23466777777542  234556655  356666676543    22


Q ss_pred             CC----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          385 SL----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       385 ~~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ..    .+.-.....|+.+    +.||++++.    |+++.+++.|+++++
T Consensus       355 ~~~~~~~~~~~~~~~gi~~----~liRlsvGl----e~~~dli~dl~~al~  397 (400)
T 3nmy_A          355 VMTHASIPVARREQLGISD----ALVRLSVGI----EDLGDLRGDLERALV  397 (400)
T ss_dssp             TTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHHC
T ss_pred             ccccccCCHHHHHhcCCCc----CeEEEEeCc----CCHHHHHHHHHHHHh
Confidence            11    2334566677765    899999997    556666666666664

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=99.94  E-value=2.8e-25  Score=222.88  Aligned_cols=344  Identities=15%  Similarity=0.094  Sum_probs=210.4

Q ss_pred             CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.++   .   ..+|++.+++.+.+.... ....  .   ....+...+++++++++++.++++++|++||++
T Consensus        27 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~--~---~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~e  100 (430)
T 3i4j_A           27 AGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLP-FVHG--S---QFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSE  100 (430)
T ss_dssp             TSCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCC-CCCT--T---TCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHH
T ss_pred             CCCEEEECCCchhccccCCCCHHHHHHHHHHHHhcc-cccc--c---ccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHH
Confidence            34468888764   2   238999999999887532 1110  0   112257778999999999988889999999999


Q ss_pred             HHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHhc-Cc-----------EEEEEeCCCC---CCCCHHHHH
Q 040741          130 SNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQE-GF-----------EITYLPVGAD---GIVNLDELR  190 (457)
Q Consensus       130 a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~~-G~-----------~v~~v~~~~~---~~~d~~~le  190 (457)
                      |++.+++.+...+.    .+++.|++..+.|.+....+..+... ..           .+..++.+..   +..|+++|+
T Consensus       101 a~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le  180 (430)
T 3i4j_A          101 ATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLR  180 (430)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEECCCCTTSCHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHH
Confidence            99999998874321    13578888777776665443332110 00           2333443322   234678899


Q ss_pred             HhcC----CCceEEEEecccc-ccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC---CCcccEEEec
Q 040741          191 AAIR----PDTGLISVMAVNN-EIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE---KWNVSLMSLS  255 (457)
Q Consensus       191 ~~i~----~~t~li~i~~~~~-~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~---~~~~Di~~~s  255 (457)
                      ++++    +++++|+++.+++ ++|.+.+    +++|.++|++||+++|+|++|+ ++..  .....   ...+|+++  
T Consensus       181 ~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t--  258 (430)
T 3i4j_A          181 ALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAV--  258 (430)
T ss_dssp             HHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEE--
T ss_pred             HHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEE--
Confidence            9886    5678888888888 9998887    9999999999999999999997 4322  11111   22367765  


Q ss_pred             cccccCC--CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIYGP--KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       256 ~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                      ++|.+|+  -.+|+++++++..+.+.......  .. ......++..+++..++++.+.+  +...++.+++.+++++.|
T Consensus       259 ~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~--~~-~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l  333 (430)
T 3i4j_A          259 LGKGLAAGYAPLAGLLAAPQVYETVMGGSGAF--MH-GFTYAGHPVSVAAGLSVLDIVER--EDLTGAAKERGAQLLAGL  333 (430)
T ss_dssp             ECGGGTTTSSCCEEEEECHHHHHHHHHTTCBC--CC-CCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred             EcccccCCccccEEEEECHHHHHHHhccCCcc--cc-cCCCCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHH
Confidence            5596653  23799999887665554321000  00 11125566777777778877655  334444444444444444


Q ss_pred             ----hhcCCCeEEeCCCCCcccceEEEEEcccc----------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          334 ----KEKLDGVVVNGSMERRYIGNLNLSFAYVE----------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       334 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                          .+ ++.+..+..    .+.++.+.+....          ..++...+  +||.+.++..+..              
T Consensus       334 ~~~~~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~--------------  394 (430)
T 3i4j_A          334 QALQAR-FPQMMQVRG----TGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEP--------------  394 (430)
T ss_dssp             HHHHHH-CTTEEEEEE----ETTEEEEEEC------------CHHHHHHHHHHTTEECC---------------------
T ss_pred             HHHHHh-CCCeEEEEE----EEEEEEEEeccccccCCCccHHHHHHHHHHHHhCCCEEEecccccC--------------
Confidence                34 566654422    1344445543211          13455555  6888876532211              


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        ....+++||+++...+++++++++++|+++++++
T Consensus       395 --~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  428 (430)
T 3i4j_A          395 --NGRGDHLLLGPPLSITAAEVDGLLALLAGALEDV  428 (430)
T ss_dssp             ------CEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence              1123789999999899999999999999998764

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.94  E-value=2.1e-26  Score=229.64  Aligned_cols=321  Identities=14%  Similarity=0.059  Sum_probs=218.2

Q ss_pred             cCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-----CCCcEEE--eCChHHHHHH
Q 040741           62 DMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-----SPKEIIF--TSGATESNNV  133 (457)
Q Consensus        62 ~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~~i~~--t~g~T~a~~~  133 (457)
                      |..+..++++.+.+++.+..... +.    .+.|+  ......++++.+++++ +.     +++++++  |+|||+|+++
T Consensus        42 ~~~~~~~~~~~v~~a~~~~~~~~-~~----~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~  114 (412)
T 1ajs_A           42 TDDCQPWVLPVVRKVEQRIANNS-SL----NHEYL--PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRI  114 (412)
T ss_dssp             CTTSCCCCCHHHHHHHHHHHTCT-TC----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHH
T ss_pred             CCCCCccccHHHHHHHHHhhhCh-hh----ccCCC--CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHH
Confidence            33333567799999998886321 11    11111  1134578889999988 53     5678999  9999999999


Q ss_pred             HHHHhhhhhcCCC-----CEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeCC--CCCCCCHHHHHHhcCC---CceEEEE
Q 040741          134 SIKGVMHFYKDKK-----RHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPVG--ADGIVNLDELRAAIRP---DTGLISV  202 (457)
Q Consensus       134 al~~~~~~~~~~g-----~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i  202 (457)
                      +++.+...  ++|     ++|++..+.|.++...++..   |.+ ++.++.+  .++.+|++++++++++   +++++++
T Consensus       115 ~~~~~~~~--~~g~~~~~d~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~  189 (412)
T 1ajs_A          115 GAEFLARW--YNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVLH  189 (412)
T ss_dssp             HHHHHHHH--SSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEE
T ss_pred             HHHHHHHh--CcCcCCCCCeEEEcCCCcHHHHHHHHHc---CCceeEEEeeecCCCCccCHHHHHHHHHhCCCCcEEEEE
Confidence            96533211  678     99999999999988776665   999 9999884  5567899999999864   6788889


Q ss_pred             eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--------ccc-CC-CCcccEEEeccccccCCCC--ceE
Q 040741          203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--------PVD-VE-KWNVSLMSLSGHKIYGPKG--VGA  267 (457)
Q Consensus       203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--------~~~-~~-~~~~Di~~~s~~K~~g~~G--~G~  267 (457)
                      ++++||+|.+.+   +++|.++|++||+++|+|++|.....        ++. +. ..+.++++.|++|.+|+.|  +|+
T Consensus       190 ~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~  269 (412)
T 1ajs_A          190 ACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGN  269 (412)
T ss_dssp             SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEE
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCcceEE
Confidence            999999999977   56899999999999999999753221        111 11 1123488999999888877  899


Q ss_pred             EEE---ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          268 LYM---RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       268 l~~---~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                      +++   +++..+.+......   ......++++...+.++..+++..      .+.+++..++++++++++.+.|++ ++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~  345 (412)
T 1ajs_A          270 LTVVAKEPDSILRVLSQMQK---IVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LK  345 (412)
T ss_dssp             EEEECSSHHHHHHHHHHHHH---HHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             EEEecCCHHHHHHHHHHHHH---HHhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hC
Confidence            998   55422222111110   001122345666666666777654      235788889999999999999988 54


Q ss_pred             ---CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741          339 ---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF  413 (457)
Q Consensus       339 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~  413 (457)
                         ++.+..+.    .+++  .+...+...+...+  +||.+.+                           .+||+++. 
T Consensus       346 ~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~-  391 (412)
T 1ajs_A          346 TPGTWNHITDQ----IGMF--SFTGLNPKQVEYLINQKHIYLLP---------------------------SGRINMCG-  391 (412)
T ss_dssp             CSSCCHHHHHC----CSSE--EECCCCHHHHHHHHHTTCEECCT---------------------------TSEEEGGG-
T ss_pred             CCCCeeEEcCC----CceE--EEeCCCHHHHHHHHHhCCEEecC---------------------------CcEEEeee-
Confidence               34443221    1221  12223333333333  5777652                           25999984 


Q ss_pred             CCHHHHHHHHHHHHHHHHH
Q 040741          414 TTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       414 ~t~edid~~~~~l~~~~~~  432 (457)
                      .+++++++++++|++++++
T Consensus       392 ~~~~~i~~~~~~l~~~l~~  410 (412)
T 1ajs_A          392 LTTKNLDYVATSIHEAVTK  410 (412)
T ss_dssp             CCTTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHh
Confidence            4789999999999998865

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.94  E-value=7.6e-27  Score=232.95  Aligned_cols=319  Identities=17%  Similarity=0.082  Sum_probs=219.4

Q ss_pred             EEecCCCCCCCCHHHHHHHHH-HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-C-----CCCCcEEE--eCChHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLP-FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-G-----ASPKEIIF--TSGATE  129 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g-----~~~~~i~~--t~g~T~  129 (457)
                      .|+|++++.++++.+.+++.+ .+..  +.    .+.|+  ......++++.+++++ +     ++++++++  |+|||+
T Consensus        38 ~~~d~~~~~~~~~~v~~a~~~~~~~~--~~----~~~y~--~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~  109 (412)
T 1yaa_A           38 AYRDDNGKPWVLPSVKAAEKLIHNDS--SY----NHEYL--GITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTG  109 (412)
T ss_dssp             CCBCTTSCBCCCHHHHHHHHHHHTCT--TC----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHH
T ss_pred             eeeCCCCCCCCcHHHHHHHHhhhcCc--cc----ccCCC--CCCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHh
Confidence            456666666788999999999 7642  11    11111  1123567888888887 3     25678999  999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-C-CCCCCCHHHHHHhcCCC---ceEEEEec
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-G-ADGIVNLDELRAAIRPD---TGLISVMA  204 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~le~~i~~~---t~li~i~~  204 (457)
                      |++++++.+..+  .+|++|++..+.|.++...++..   |.+++.++. + .++.+|+++++++++++   +.++++++
T Consensus       110 a~~~~~~~~~~~--~~gd~Vl~~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~  184 (412)
T 1yaa_A          110 ALHISAKFFSKF--FPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSC  184 (412)
T ss_dssp             HHHHHHHHHHHH--CTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECS
T ss_pred             HHHHHHHHHHHh--CCCCEEEEeCCCCccHHHHHHHc---CceEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence            999985433211  68999999999999988776654   999999998 4 36779999999998653   56666799


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC--------cc-cCCCCc----ccEEEeccccccCCCC--ce
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI--------PV-DVEKWN----VSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~--------~~-~~~~~~----~Di~~~s~~K~~g~~G--~G  266 (457)
                      ++||+|.+.+   +++|+++|++||+++|+|++|+....        ++ ++...+    .++++.|++|.+|+.|  +|
T Consensus       185 p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~GlriG  264 (412)
T 1yaa_A          185 AHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVG  264 (412)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEE
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCCcce
Confidence            9999999987   56789999999999999999963211        11 211112    4578899999988877  79


Q ss_pred             EEE--E-----ecC----CCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHH
Q 040741          267 ALY--M-----RRR----PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRL  329 (457)
Q Consensus       267 ~l~--~-----~~~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l  329 (457)
                      +++  .     +++    .+.++.....       ....+++.....++..+++..      .+.+++..++++++++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  337 (412)
T 1yaa_A          265 CFHLALTKQAQNKTIKPAVTSQLAKIIR-------SEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHAL  337 (412)
T ss_dssp             EEEEECCSCTTHHHHHHHHHHHHHHHHH-------TTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHh-------hccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998  5     333    3333322111       112345666666666677654      235788889999999999


Q ss_pred             HHHHhhcCC---CeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          330 LNGIKEKLD---GVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       330 ~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                      .+.|++ ++   ++.+..+.    .+++  .+...+...+...+  +||.+.                           .
T Consensus       338 ~~~L~~-~~~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~l~~~gi~v~---------------------------~  383 (412)
T 1yaa_A          338 RDHLVK-LGTPGNWDHIVNQ----CGMF--SFTGLTPQMVKRLEETHAVYLV---------------------------A  383 (412)
T ss_dssp             HHHHHH-HTCSSCCTHHHHC----CSSE--EECCCCHHHHHHHHHHHCEECC---------------------------T
T ss_pred             HHHHHh-hCCCCCeeeeccC----ceEE--EeeCCCHHHHHHHHHhCCEEec---------------------------c
Confidence            999988 43   25443321    2221  12233444443333  477664                           2


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+||+++. .+++++++++++|+++++.
T Consensus       384 ~~Ris~~~-~~~~~i~~~~~~l~~~~~~  410 (412)
T 1yaa_A          384 SGRASIAG-LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             TSEEEGGG-CCTTTHHHHHHHHHHHHHH
T ss_pred             CcEEEEcc-CCHhHHHHHHHHHHHHHHh
Confidence            47999985 4799999999999998764

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.89  E-value=1.4e-28  Score=243.87  Aligned_cols=328  Identities=14%  Similarity=0.122  Sum_probs=229.7

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCChHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSGATE  129 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g~T~  129 (457)
                      +.+.|..+.+. +.++++.+++.+.+...       .+.|+.    ...++++.+++++    |  .+++++++|+|+++
T Consensus        32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-------~~~y~~----~~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~  100 (392)
T 3b1d_A           32 QLLPAWIADMDFEVMPEVKQAIHDYAEQL-------VYGYTY----ASDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVP  100 (392)
Confidence            45566555544 56788999988887531       111111    1445666666554    5  55678999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CC--CCCCHHHHHHhcC-CCceEEEEecc
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-AD--GIVNLDELRAAIR-PDTGLISVMAV  205 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~--~~~d~~~le~~i~-~~t~li~i~~~  205 (457)
                      |+.++++++.    ++|++|++..+.|.++...++..   |.+++.++.+ .+  +.+|+++++++++ +++++|+++++
T Consensus       101 a~~~~~~~~~----~~gd~vl~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~  173 (392)
T 3b1d_A          101 AISIAIQAFT----KEGEAVLINSPVYPPFARSVRLN---NRKLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNP  173 (392)
Confidence            9999999987    78999999999999998877665   8899888875 32  3489999999997 67889999999


Q ss_pred             ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cccC---CC--CcccEEEeccccccCCCC--ceEEEEe
Q 040741          206 NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PVDV---EK--WNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       206 ~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~~~---~~--~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      +||+|.+.|   +++|.++|++||+++|+|++|+....    ...+   ..  .+.++++.|++|.+|.+|  +|+++++
T Consensus       174 ~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~  253 (392)
T 3b1d_A          174 HNPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIE  253 (392)
Confidence            999999987   88999999999999999999985322    1111   11  345688999999876444  7999987


Q ss_pred             cC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcc
Q 040741          272 RR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRY  350 (457)
Q Consensus       272 ~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  350 (457)
                      ++ ..+.+......+      ..++++.....++.++++...+.+++..++++++++++.+.|++.+|++.+..+.    
T Consensus       254 ~~~~~~~~~~~~~~~------~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----  323 (392)
T 3b1d_A          254 NPTLCAQFKHQQLVN------NHHEVSSLGYIATETAYRYGKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMKPQ----  323 (392)
Confidence            54 666555433221      1124455555555556654334577888888899999998887634677665432    


Q ss_pred             cceE-EEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          351 IGNL-NLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       351 ~~~~-~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                      .+++ .+.++.  .+..++...|   +||.+.+|..+..                 ...+++||+++.  ++++++++++
T Consensus       324 ~~~~~~i~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~-----------------~~~~~iRi~~~~--~~e~i~~~l~  384 (392)
T 3b1d_A          324 GTYLIWLDFSDYGLTDDALFTLLHDQAKVILNRGSDYGS-----------------EGELHARLNIAA--PKSLVEEICK  384 (392)
Confidence            2222 234432  2445566555   3888887764421                 123789999876  5789999999


Q ss_pred             HHHHHHH
Q 040741          425 LTVKQVE  431 (457)
Q Consensus       425 ~l~~~~~  431 (457)
                      +|+++++
T Consensus       385 ~l~~~l~  391 (392)
T 3b1d_A          385 RIVCCLP  391 (392)
Confidence            9988765

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.94  E-value=1.6e-26  Score=229.20  Aligned_cols=319  Identities=15%  Similarity=0.063  Sum_probs=215.8

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh---C---CCCCcEEE--eCChHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI---G---ASPKEIIF--TSGATESN  131 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~---g---~~~~~i~~--t~g~T~a~  131 (457)
                      |++..+..++++++.+++.+.+...  .    .+.|+  ......++++.+++++   +   ++++++++  |+|||+|+
T Consensus        36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~----~~~y~--~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~  107 (396)
T 2q7w_A           36 YKDETGKTPVLTSVKKAEQYLLENE--T----TKNYL--GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL  107 (396)
T ss_dssp             CCCTTSCCCCCHHHHHHHHHHHHHC--C----CCCCC--CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred             ccCCCCCccCcHHHHHHHHhhcCcc--c----ccCCC--CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhH
Confidence            3333334467799999998887542  1    11111  1134567888888887   2   23678998  99999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC---CceEEEEeccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP---DTGLISVMAVN  206 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~---~t~li~i~~~~  206 (457)
                      +++++.+..+  .+|++|++..+.|.++...++..   |.+++.++.+  .++.+|++++++++++   +++++++++++
T Consensus       108 ~~~~~~~~~~--~~gd~Vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~  182 (396)
T 2q7w_A          108 RVAADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCH  182 (396)
T ss_dssp             HHHHHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred             HHHHHHHHHh--CCCCEEEEcCCCchhHHHHHHHc---CCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence            9999876522  58999999999999988877665   9999999985  5677899999999975   47888999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-------ccc-CCC-CcccEEEeccccccCCCC--ceEEEE--
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-------PVD-VEK-WNVSLMSLSGHKIYGPKG--VGALYM--  270 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-------~~~-~~~-~~~Di~~~s~~K~~g~~G--~G~l~~--  270 (457)
                      ||+|.+.+   +++|.++|++||+++|+|++|+....       ++. +.. .+.++++.|++|.+|++|  +|++++  
T Consensus       183 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~  262 (396)
T 2q7w_A          183 NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNERVGACTLVA  262 (396)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccccccccccceEEEEc
Confidence            99999987   56799999999999999999875322       111 111 134588999999988777  799997  


Q ss_pred             -ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCC---Ce
Q 040741          271 -RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA------KKEMDYDHKRITALHDRLLNGIKEKLD---GV  340 (457)
Q Consensus       271 -~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~  340 (457)
                       +++..+.+......   ......++++.....++..+++..      .+.+++..++++++++++.+.|++ +.   ++
T Consensus       263 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~  338 (396)
T 2q7w_A          263 ADSETVDRAFSQMKA---AIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDF  338 (396)
T ss_dssp             SSHHHHHHHHHHHHH---HHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCC
T ss_pred             CCHHHHHHHHHHHHH---HHhhccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Confidence             33221222111110   000112344666666666666533      245677788889999999999988 53   24


Q ss_pred             EEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .+..+.    .+++ +.+ ..+...+...+  +||.+.+                           .+||+++.. ++++
T Consensus       339 ~~~~~~----~~~~-~~~-~~~~~~~~~~l~~~gv~v~~---------------------------~~Ris~~~~-~~e~  384 (396)
T 2q7w_A          339 SFIIKQ----NGMF-SFS-GLTKEQVLRLREEFGVYAVA---------------------------SGRVNVAGM-TPDN  384 (396)
T ss_dssp             THHHHC----CSSE-EEC-CCCHHHHHHHHHHHCEECCT---------------------------TCEEEGGGC-CTTT
T ss_pred             ceecCC----CceE-EEe-cCCHHHHHHHHHhcCeeecC---------------------------CceEEEeec-CHHH
Confidence            433221    2222 222 23333344444  4777652                           369999854 7899


Q ss_pred             HHHHHHHHHHH
Q 040741          419 VDRAIELTVKQ  429 (457)
Q Consensus       419 id~~~~~l~~~  429 (457)
                      +++++++|+++
T Consensus       385 i~~~~~~l~~~  395 (396)
T 2q7w_A          385 MAPLCEAIVAV  395 (396)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999999875

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=99.94  E-value=3.5e-24  Score=215.53  Aligned_cols=336  Identities=13%  Similarity=0.069  Sum_probs=220.0

Q ss_pred             CCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC-CcEEEeCChH
Q 040741           56 GRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP-KEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~-~~i~~t~g~T  128 (457)
                      .+.-|+|+.++.+      .+|++.+++.+.+.......      +.....+...+++++++++++... ++++|++||+
T Consensus        41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggs  114 (439)
T 3dxv_A           41 NGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGAT------ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGS  114 (439)
T ss_dssp             TSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHSCSCSC------SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHH
T ss_pred             CCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHH
Confidence            4456888887665      68999999999987642111      111223678899999999997655 5899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC--c---------EEEEEeCCCCCCC-----CHHHHHHh
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG--F---------EITYLPVGADGIV-----NLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G--~---------~v~~v~~~~~~~~-----d~~~le~~  192 (457)
                      +|++.+++.+..+. ++++.|+.....|.....+........  +         .+..++.+..+..     |+++|+++
T Consensus       115 ea~~~al~~~~~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~  193 (439)
T 3dxv_A          115 DANEAAYRAIVKAT-GRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEK  193 (439)
T ss_dssp             HHHHHHHHHHHHHH-SCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHH
Confidence            99999999864221 344444555556666665543321100  1         1123333322222     68999999


Q ss_pred             c----CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC----cccCCCCcccEEEeccccc
Q 040741          193 I----RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI----PVDVEKWNVSLMSLSGHKI  259 (457)
Q Consensus       193 i----~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~----~~~~~~~~~Di~~~s~~K~  259 (457)
                      +    .+++++|+++++++++|.+.|    +++|.++|++||+++|+|++|+ ++..    ..+.....+|++  |++|.
T Consensus       194 l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~--s~sK~  271 (439)
T 3dxv_A          194 LAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDIL--VLGKG  271 (439)
T ss_dssp             HHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEE--EECGG
T ss_pred             HHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEE--EEcch
Confidence            9    567899999999999999998    9999999999999999999996 3211    112222346776  66696


Q ss_pred             cCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc--
Q 040741          260 YGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK--  336 (457)
Q Consensus       260 ~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~--  336 (457)
                      +|+ -++|+++++++.++.+.+...+       ... .++..+++..++++.+.+  +...++.+++.+++++.|.+.  
T Consensus       272 ~~~G~riG~~~~~~~~~~~~~~~~~~-------~t~-~~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~  341 (439)
T 3dxv_A          272 LGGGLPLSAVIAPAEILDCASAFAMQ-------TLH-GNPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAK  341 (439)
T ss_dssp             GGTTSCCEEEEEEHHHHTSCSSSSCC-------TTT-TCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcceEEEEECHHHHhhhcCCCcC-------CCc-ccHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHH
Confidence            653 2489999998766666543211       112 456666666677776654  445556666666666655441  


Q ss_pred             -CCCeEEeCCCCCcccceEEEEEcc---------ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          337 -LDGVVVNGSMERRYIGNLNLSFAY---------VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       337 -~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                       ++.+.....    .+.++.+.+..         .....+...+  +||.+.++..                     ..+
T Consensus       342 ~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~---------------------~~~  396 (439)
T 3dxv_A          342 RHPLIGDIRG----RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGM---------------------NGN  396 (439)
T ss_dssp             HCTTEEEEEE----ETTEEEEEEEEETTTTEECHHHHHHHHHHHHHHTEECEEEST---------------------TSC
T ss_pred             hCCCeEEEEE----EEEEEEEEEecCccccCCCHHHHHHHHHHHHHCCcEEeecCC---------------------CCC
Confidence             454443321    14444444421         1123444444  5888876531                     127


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ++||+++..++++++++++++|+++++++..
T Consensus       397 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  427 (439)
T 3dxv_A          397 VLEFTPPLTITETDIHKALDLLDRAFSELSA  427 (439)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHHTGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999988754

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.94  E-value=5.4e-26  Score=233.80  Aligned_cols=338  Identities=12%  Similarity=0.074  Sum_probs=223.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--C--C-CCcEEEeCChHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--A--S-PKEIIFTSGATESNN  132 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~--~-~~~i~~t~g~T~a~~  132 (457)
                      +.|..+.+...++++++++.+.+... +..|..       ...+..+.+.+.+.+..+  .  . ++++++|+|+|+|+.
T Consensus       106 i~l~~g~~~~~~~~~v~a~~~~~~~~~y~~~~~-------g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~  178 (533)
T 3f6t_A          106 VNYCHTELGLNRDKVVAEWVNGAVANNYPVPDR-------CLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIV  178 (533)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHTCSCCSSSS-------CCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHH
T ss_pred             eeccCCCCCcCCcHHHHHHHHHHHhCCCCCCcc-------cHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHH
Confidence            44555555555678888777766531 111111       112333334444443312  2  2 357999999999999


Q ss_pred             HHHHH-----hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC----CCCCCCHHHHHHhcCCCceEEEEe
Q 040741          133 VSIKG-----VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG----ADGIVNLDELRAAIRPDTGLISVM  203 (457)
Q Consensus       133 ~al~~-----~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~----~~~~~d~~~le~~i~~~t~li~i~  203 (457)
                      +++.+     +.    ++||+|+++.++|.++...++..   |++++.++++    .++.+|+++|++++++++++|+++
T Consensus       179 ~~~~~l~~~~l~----~~gd~Viv~~p~~~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~~~k~v~l~  251 (533)
T 3f6t_A          179 YAFHSLAENHLL----KKGDKIAINEPIFTPYLRIPELK---DYELVEVDLHSYEKNDWEIEPNEIEKLKDPSIKALIVV  251 (533)
T ss_dssp             HHHHHHHHTTSS----CTTCEEEEESSCCHHHHTSGGGG---GSEEEEECCCEETTTTSEECHHHHHHHSCTTEEEEEEE
T ss_pred             HHHHHhhhhhcc----CCcCEEEEcCCCcHHHHHHHHHc---CCeEEEEEecCCcccCCCCCHHHHHHHhCCCCeEEEEe
Confidence            99998     45    89999999999999988766554   8999999885    356789999999999999999999


Q ss_pred             ccccccccccChH---HHHHHHH-hcCCcEEEehhhhcCCCc---ccCCCCcccEEEeccccccCCCC--ceEEEEecC-
Q 040741          204 AVNNEIGVIQPME---EIGQICK-EFKIPFHTDAAQALGKIP---VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRR-  273 (457)
Q Consensus       204 ~~~~~~G~~~~l~---~i~~l~~-~~~v~li~D~a~~~g~~~---~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~-  273 (457)
                      +++||+|.+.|.+   +|+++|+ +||+++|+|++|+.....   +.....+.++++.|++|.+|++|  +|+++++++ 
T Consensus       252 ~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~  331 (533)
T 3f6t_A          252 NPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGWRLGVIALNEKN  331 (533)
T ss_dssp             SSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGGCEEEEEEESSC
T ss_pred             CCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccCCCcccceEEEEECcHH
Confidence            9999999999865   7888888 689999999999743221   11111245699999999988777  899999876 


Q ss_pred             ----CCcccccc-------------------------ccCCccccccccCCCChhHHHHHH-HHHHHHH---------Hh
Q 040741          274 ----PRIRVEPL-------------------------INGGGQERGIRSGTLPTPLIVGFG-SACEIAK---------KE  314 (457)
Q Consensus       274 ----~~~~~~~~-------------------------~~~~~~~~~~~~~t~~~~~~~al~-~al~~~~---------~~  314 (457)
                          .+..+.+.                         .............+.+.+...++. .++..+.         ..
T Consensus       332 ~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~  411 (533)
T 3f6t_A          332 VFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPY  411 (533)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHH
T ss_pred             HHHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHH
Confidence                32222110                         000001111223345555444421 1222222         34


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----------------ccchHHHhcc---cCeE
Q 040741          315 MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----------------VEGESLLMGL---KEVA  374 (457)
Q Consensus       315 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~l---~~i~  374 (457)
                      +++..++++++++++.+.|.  + ++.+.. +..  +.++.+.++.                 .+..+++..+   +||.
T Consensus       412 ~~~~~~~~~~r~~~l~~~L~--~-~~~~~~-~~~--g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~  485 (533)
T 3f6t_A          412 IDIARKLVSERYDQLHDAMQ--A-PKDETD-TNT--HYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVV  485 (533)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--C-CCCCST-TBC--CSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHHHHhcC--C-CccccC-CCc--eEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEE
Confidence            67788888888999988885  2 233222 111  2333344432                 1333444443   5999


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      +.+|..|..+                  .++|||+++. .+++++++++++|.++++++.+
T Consensus       486 v~pg~~f~~~------------------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~~~~  527 (533)
T 3f6t_A          486 LVDGVGFGAK------------------PGELRVSQAN-LPTEDYALIGKQVLELLKEYYE  527 (533)
T ss_dssp             SCTTEEECSS------------------TTEEEEESSS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeCCcccCCC------------------CCEEEEEEee-CCHHHHHHHHHHHHHHHHHHHH
Confidence            9999887541                  2799999965 5689999999999999988753

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=99.93  E-value=2.4e-24  Score=217.18  Aligned_cols=335  Identities=15%  Similarity=0.104  Sum_probs=222.0

Q ss_pred             CCcEEecCCCCC------CCCHHHH-H-HHHH---HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC-CCCCcEEE
Q 040741           56 GRPLYLDMQATT------PVDPRVL-D-AMLP---FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG-ASPKEIIF  123 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~-~-a~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g-~~~~~i~~  123 (457)
                      .+..|||+.++.      ..+|++. + ++.+   .+.... . .+  .  .+ ..+...++++.++++++ .++++++|
T Consensus        52 ~g~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~~-~-~~--~--~~-~~~~~~~la~~la~~~~~~~~~~v~~  124 (449)
T 2cjg_A           52 TGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNK-P-SN--S--DV-YSVAMARFVETFARVLGDPALPHLFF  124 (449)
T ss_dssp             TCCEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTCC-C-CT--T--TC-CCHHHHHHHHHHHHHHCCTTCCEEEE
T ss_pred             CCcEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhcC-C-CC--c--cc-CCHHHHHHHHHHHHhcCCCCCCEEEE
Confidence            455788874432      3589999 9 9999   554321 1 11  1  11 12467788899999997 45678999


Q ss_pred             eCChHHHHHHHHHHhhhhhc---------C-CCCEEEEcCCCCcchHHHH-HHH-----HhcCc-----EEEEEeCCC--
Q 040741          124 TSGATESNNVSIKGVMHFYK---------D-KKRHVITTQTEHKCVLDSC-RHL-----QQEGF-----EITYLPVGA--  180 (457)
Q Consensus       124 t~g~T~a~~~al~~~~~~~~---------~-~g~~vi~~~~~h~~~~~~~-~~~-----~~~G~-----~v~~v~~~~--  180 (457)
                      ++|||+|++.+++.+..+..         + ++++||+..+.|.+....+ ...     ...|+     .+..++.++  
T Consensus       125 ~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  204 (449)
T 2cjg_A          125 VEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPG  204 (449)
T ss_dssp             ESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTT
T ss_pred             eCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCch
Confidence            99999999999997654433         1 2789988887665543321 111     11233     566666553  


Q ss_pred             CC--------CCCHHHHHHhcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc---
Q 040741          181 DG--------IVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP---  241 (457)
Q Consensus       181 ~~--------~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~---  241 (457)
                      ..        ..|+++|+++++   +++++|++++++|++|.+.+    +++|.++|++||+++|+|++|+ +|...   
T Consensus       205 ~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~  284 (449)
T 2cjg_A          205 LDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAW  284 (449)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSS
T ss_pred             hhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcce
Confidence            11        245677898884   68899999999999998777    9999999999999999999998 43221   


Q ss_pred             -ccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHH
Q 040741          242 -VDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHK  320 (457)
Q Consensus       242 -~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~  320 (457)
                       .......+|+++  ++|.+ |  +|+++++++..+.+.+...+....  ......++..++++.++++.+.+  +...+
T Consensus       285 ~~~~~~~~~di~t--~sK~l-~--iG~~~~~~~~~~~l~~~~~~~~~~--~~t~~~n~~~~~aa~aal~~~~~--~~~~~  355 (449)
T 2cjg_A          285 AYQQLDVAPDIVA--FGKKT-Q--VCGVMAGRRVDEVADNVFAVPSRL--NSTWGGNLTDMVRARRILEVIEA--EGLFE  355 (449)
T ss_dssp             THHHHTCCCSEEE--ECGGG-S--SEEEEECGGGGGSTTCTTTSTTSS--CCSSSSCHHHHHHHHHHHHHHHH--HTHHH
T ss_pred             eecccCCCceEEE--ecCcc-c--EEEEEECHHHhhhhhhcccCCccc--ccCCCCCHHHHHHHHHHHHHHHh--ccHHH
Confidence             111123467775  55966 3  899999887666544321111110  01224567777777788887765  45667


Q ss_pred             HHHHHHHHHHHHHhhc---CCC-eEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHH
Q 040741          321 RITALHDRLLNGIKEK---LDG-VVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLR  393 (457)
Q Consensus       321 ~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~  393 (457)
                      +.+++.+++++.|++.   ++. +.....    .+.++.+.+... ...++...|  +||.+.++.              
T Consensus       356 ~~~~~~~~l~~~L~~l~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------------  417 (449)
T 2cjg_A          356 RAVQHGKYLRARLDELAADFPAVVLDPRG----RGLMCAFSLPTTADRDELIRQLWQRAVIVLPAG--------------  417 (449)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTTSEEEEE----ETTEEEEECSSHHHHHHHHHHHHHTTEECEEET--------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCceeeEee----ccEEEEEEECChHHHHHHHHHHHHCCeEEecCC--------------
Confidence            7788888888887651   344 432211    245555555431 234555555  688877542              


Q ss_pred             HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          394 ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       394 ~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                               .+.|||+++..++++|+++++++|+++++++
T Consensus       418 ---------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~  448 (449)
T 2cjg_A          418 ---------ADTVRFRPPLTVSTAEIDAAIAAVRSALPVV  448 (449)
T ss_dssp             ---------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence                     2799999999999999999999999998753

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=99.93  E-value=2.1e-24  Score=216.70  Aligned_cols=337  Identities=13%  Similarity=0.083  Sum_probs=219.1

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++.      ..+|++.+++.+.+... .+..   .  ++. .+...++++.++++++.++++++|++||++
T Consensus        41 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~---~--~~~-~~~~~~l~~~la~~~~~~~~~v~~~~gg~e  113 (433)
T 1zod_A           41 DGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-DHLF---S--EML-SRPVVDLATRLANITPPGLDRALLLSTGAE  113 (433)
T ss_dssp             TCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCC---T--TCC-CHHHHHHHHHHHHHSCTTCCEEEEESCHHH
T ss_pred             CCCEEEEcccchhccccCCCCHHHHHHHHHHHHhC-cccc---c--ccC-CHHHHHHHHHHHHhCCCCcCEEEEeCchHH
Confidence            455688885432      24899999999998653 1211   1  111 246778889999999987888999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcc-hHHHHHHHH--------hcCcEEEEEeCCCC------------CCCCHHH
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKC-VLDSCRHLQ--------QEGFEITYLPVGAD------------GIVNLDE  188 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~-~~~~~~~~~--------~~G~~v~~v~~~~~------------~~~d~~~  188 (457)
                      |++.+++.+..+  ..+++|++..+.|.+ ...+.....        .....+..++.+..            +.+|+++
T Consensus       114 a~~~a~~~~~~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~  191 (433)
T 1zod_A          114 SNEAAIRMAKLV--TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDY  191 (433)
T ss_dssp             HHHHHHHHHHHH--HTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHH
T ss_pred             HHHHHHHHHHHh--hCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHH
Confidence            999999876422  235778877765544 443332210        00113445544321            1246999


Q ss_pred             HHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcccEEEec
Q 040741          189 LRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVSLMSLS  255 (457)
Q Consensus       189 le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~Di~~~s  255 (457)
                      |+++++    +++++|+++.++|++|.+.+    +++|.++|++||+++|+|++|+ ++...  .  +.....+|++  |
T Consensus       192 le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~--s  269 (433)
T 1zod_A          192 AFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDIL--T  269 (433)
T ss_dssp             HHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--E
T ss_pred             HHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEE--E
Confidence            999986    56788888888888998776    9999999999999999999998 54221  1  1112246765  5


Q ss_pred             cccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 040741          256 GHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       256 ~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      ++|.+|+ .++|+++++++.++.+.+....    .+ ...+.++..++++.++++.+.+  +...++.+++.+++++.|+
T Consensus       270 ~sK~~~~G~~ig~~~~~~~~~~~~~~~~~~----~~-~t~~~~~~~~~a~~aal~~~~~--~~~~~~~~~~~~~l~~~l~  342 (433)
T 1zod_A          270 LSKTLGAGLPLAAIVTSAAIEERAHELGYL----FY-TTHVSDPLPAAVGLRVLDVVQR--DGLVARANVMGDRLRRGLL  342 (433)
T ss_dssp             ECHHHHTTSSCEEEEECHHHHHHHHHTTCC----CC-CTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred             ecccccCCCCeeEEEEhHHHHHhhccCCCC----CC-CCCCcCHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHH
Confidence            6695543 3489999988665555431100    00 1124466777777778877665  3456677777777777776


Q ss_pred             hc---CCCeEEeCCCCCcccceEEEEEccc---------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          335 EK---LDGVVVNGSMERRYIGNLNLSFAYV---------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       335 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      +.   ++.+.....    .+.++.+.+...         ....+...+  +||.+.+|..+              +    
T Consensus       343 ~l~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------~----  400 (433)
T 1zod_A          343 DLMERFDCIGDVRG----RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLP--------------G----  400 (433)
T ss_dssp             HHHHHCTTEEEEEE----ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCEECCT--------------T----
T ss_pred             HHHHhCCCeEEEEE----EEEEEEEEEecCccccCCChHHHHHHHHHHHHCCCeEeccCCC--------------C----
Confidence            51   344432211    144445555321         134455555  68888776421              1    


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                       ..+++||+++..++++++++++++|+++++++
T Consensus       401 -~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~~~  432 (433)
T 1zod_A          401 -MGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  432 (433)
T ss_dssp             -SCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEECCcCCCHHHHHHHHHHHHHHHHHh
Confidence             12799999999999999999999999988754

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=99.93  E-value=9.9e-24  Score=212.75  Aligned_cols=341  Identities=11%  Similarity=0.058  Sum_probs=210.8

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      .+.-|+|+.+.      +..+|++.+++.+.+..... .+..       ...+...+++++++++++.+.++++|++|||
T Consensus        42 ~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~~~~~v~~~~sGs  114 (448)
T 3dod_A           42 NGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIAHSTLLG-------MTNVPATQLAETLIDISPKKLTRVFYSDSGA  114 (448)
T ss_dssp             TSCEEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCSCCCCSS-------SEEHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccCccccc-------cCCHHHHHHHHHHHHhCCCCCCEEEEeCchH
Confidence            44568888763      23589999999999865311 1111       1125677899999999976667899999999


Q ss_pred             HHHHHHHHHhhhhhcCC----CCEEEEcCCCCcchHHHHHHHHh-c---------CcEEEEEeCCCCCC-----------
Q 040741          129 ESNNVSIKGVMHFYKDK----KRHVITTQTEHKCVLDSCRHLQQ-E---------GFEITYLPVGADGI-----------  183 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~----g~~vi~~~~~h~~~~~~~~~~~~-~---------G~~v~~v~~~~~~~-----------  183 (457)
                      +|++.+++.+..++..+    +++||+..+.|.+.......+.. .         ...+..++.+....           
T Consensus       115 eA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (448)
T 3dod_A          115 EAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRD  194 (448)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhH
Confidence            99999999987542224    48898888777655443332210 0         11233444443222           


Q ss_pred             CCHHHHHHhcC---CCceEEEEeccc-cccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCccc
Q 040741          184 VNLDELRAAIR---PDTGLISVMAVN-NEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNVS  250 (457)
Q Consensus       184 ~d~~~le~~i~---~~t~li~i~~~~-~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~D  250 (457)
                      .|+++|+++++   +++++|+++.++ ++.|.+.+    +++|.++|++||++||+|++|+ +|..  .  .......+|
T Consensus       195 ~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~d  274 (448)
T 3dod_A          195 QCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPD  274 (448)
T ss_dssp             HHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCS
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCC
Confidence            24889999986   567889999998 99998877    9999999999999999999987 4321  1  122223467


Q ss_pred             EEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       251 i~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++++  +|.+| + .++|+++++++..+.+..................++..+++..++++.+.+  +...++.+++.++
T Consensus       275 i~t~--sK~l~~G~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~  350 (448)
T 3dod_A          275 LMAA--GKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLALFES--ENIVEQVAEKSKK  350 (448)
T ss_dssp             EEEE--CGGGGTTSSCCEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred             EEEe--cccccCCcCceEEEEECHHHHHHhhhccccCCcccccCCCCcCHHHHHHHHHHHHHHhc--ccHHHHHHHHHHH
Confidence            7654  59544 3 258999999876666554100000000001124566677777778877655  3444555555555


Q ss_pred             HHHHHhh--cCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          329 LLNGIKE--KLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       329 l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      +++.|.+  .++.+....    ..+.++.+.+....            ...+...+  +||.+.++.             
T Consensus       351 ~~~~l~~l~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-------------  413 (448)
T 3dod_A          351 LHFLLQDLHALPHVGDIR----QLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLG-------------  413 (448)
T ss_dssp             HHHHHHHHTTSTTEEEEE----EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECCEET-------------
T ss_pred             HHHHHHHHhcCCCeEEEE----eeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHCCcEEeccC-------------
Confidence            5555543  144443221    11344445553211            13444444  577776541             


Q ss_pred             HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                 +.|||+++..++++++++++++|+++++++..
T Consensus       414 -----------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  445 (448)
T 3dod_A          414 -----------DVIAFLPPLASTAEELSEMVAIMKQAIHEVTS  445 (448)
T ss_dssp             -----------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             -----------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence                       79999999999999999999999999987653

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.93  E-value=1.2e-25  Score=227.97  Aligned_cols=341  Identities=17%  Similarity=0.173  Sum_probs=215.0

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIK  136 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~  136 (457)
                      +..|+|+.+..+. +++.+++.+.+..  +.     ..|+.  .+...++++++++++|.  ++++||+|||+|++++++
T Consensus        40 ~~~ylD~~~~~~~-~~v~~a~~~~l~~--~~-----~~y~~--~~~~~~l~~~la~~~~~--~~v~~t~~gt~A~~~al~  107 (467)
T 2oqx_A           40 EDVFIDLLTDSGT-GAVTQSMQAAMMR--GD-----EAYSG--SRSYYALAESVKNIFGY--QYTIPTHQGRGAEQIYIP  107 (467)
T ss_dssp             GGCSEECSCCSSC-SCCCHHHHHHTTS--CC-----CCSSS--CHHHHHHHHHHHHHHCC--SEEEEEC--CCSHHHHHH
T ss_pred             CCeeEecccCCCc-HHHHHHHHHHhcc--Cc-----ceecc--CchhHHHHHHHHHHhCc--CcEEEcCCcHHHHHHHHH
Confidence            4468888776665 7888888887642  11     11111  14567899999999997  459999999999999999


Q ss_pred             HhhhhhcCC-----C----CEEEEcCCCCcchHHHHHHHHhcCcEEEEE------eCC----CCCCCCHHHHHHhcC---
Q 040741          137 GVMHFYKDK-----K----RHVITTQTEHKCVLDSCRHLQQEGFEITYL------PVG----ADGIVNLDELRAAIR---  194 (457)
Q Consensus       137 ~~~~~~~~~-----g----~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v------~~~----~~~~~d~~~le~~i~---  194 (457)
                      ++.    ++     |    |+|++. ..|.......-  ...|..+...      +.+    .++.+|+++|+++|+   
T Consensus       108 ~~~----~~~~~~~G~~~~d~Ii~~-~~h~~t~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~  180 (467)
T 2oqx_A          108 VLI----KKREQEKGLDRSKMVAFS-NYFFDTTQGHS--QINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG  180 (467)
T ss_dssp             HHH----HHHHHHHCCCTTTCEEEE-SSCCHHHHHHH--HHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHC
T ss_pred             HHh----ccccccCCCCccceEEec-ccccccchhhh--hccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcC
Confidence            987    44     6    888776 56655433322  2236655443      122    346789999999997   


Q ss_pred             -CCceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc-----------CCCcccCCC------CcccEE
Q 040741          195 -PDTGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL-----------GKIPVDVEK------WNVSLM  252 (457)
Q Consensus       195 -~~t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~-----------g~~~~~~~~------~~~Di~  252 (457)
                       +++++|++++++|++ |.+.+   +++|+++|++||+++|+|++|++           +........      ..+|++
T Consensus       181 ~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~  260 (467)
T 2oqx_A          181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADML  260 (467)
T ss_dssp             GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEE
T ss_pred             CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeE
Confidence             478999999999997 77655   78999999999999999987765           222222111      236888


Q ss_pred             EeccccccCCC-CceEEEEecC-CC---ccccccc-cCCccccccccCCCChhHHHHHHHHHHHHHHhhH-HHHHHHHHH
Q 040741          253 SLSGHKIYGPK-GVGALYMRRR-PR---IRVEPLI-NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMD-YDHKRITAL  325 (457)
Q Consensus       253 ~~s~~K~~g~~-G~G~l~~~~~-~~---~~~~~~~-~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~-~~~~~~~~~  325 (457)
                      ++|+||.+|.+ | |+++++++ .+   .++.+.. .+++.   ...+..+...+.++..++   .+.++ ...++..++
T Consensus       261 ~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~al~~~l---~~~~~~~~~~~~~~~  333 (467)
T 2oqx_A          261 AMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---PTYGGLEGGAMERLAVGL---YDGMNLDWLAYRIAQ  333 (467)
T ss_dssp             EEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS---CCCCCCCHHHHHHHHHHH---HHTTCHHHHHHHHHH
T ss_pred             EEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc---ccccchhhhHHHHHHHhh---HhhhhHHHHHHHHHH
Confidence            99999987755 5 77777655 22   2233322 11111   112333433333332222   22222 345666788


Q ss_pred             HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc----cccchH-----HHhcc---cCeEecccCccCCCCCChhHHHH
Q 040741          326 HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA----YVEGES-----LLMGL---KEVAVSSGSACTSASLEPSYVLR  393 (457)
Q Consensus       326 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~l---~~i~~~~g~~~~~~~~~~~~~l~  393 (457)
                      .+++.+.|.+ + ++.+. +. .  ..++.+.+.    +.+..+     +...|   +||.+.++..|..+.. |.    
T Consensus       334 ~~~l~~~L~~-~-~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~-~~----  402 (467)
T 2oqx_A          334 VQYLVDGLEE-I-GVVCQ-QA-G--GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRD-PK----  402 (467)
T ss_dssp             HHHHHHHHHH-T-TCCEE-EE-C--SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBC-TT----
T ss_pred             HHHHHHHHHH-C-CCeee-cC-C--ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceeccccccccccc-cc----
Confidence            8999999988 5 66655 32 1  344555553    223222     24444   5898887554321100 00    


Q ss_pred             HcCCCccCCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHh
Q 040741          394 ALGVDEDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       394 ~~g~~~~~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~  435 (457)
                       .|.......+.|||+++.. ++++||++++++|++++++.++
T Consensus       403 -~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~~~~~  444 (467)
T 2oqx_A          403 -TGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAAN  444 (467)
T ss_dssp             -TCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHHSGGG
T ss_pred             -ccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence             0111122347999999998 9999999999999999987543

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=99.93  E-value=1.7e-23  Score=211.28  Aligned_cols=342  Identities=11%  Similarity=0.038  Sum_probs=218.4

Q ss_pred             CCcEEecCCCC---C---CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT---T---PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~---~---~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.+.   .   ..+|++.+++.+.+....-.+.       ....+...+++++++++++.+.+ ++||+|||+
T Consensus        47 ~g~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~-------~~~~~~~~~la~~l~~~~~~~~~-v~~~~ggse  118 (452)
T 3n5m_A           47 QGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPM-------SQSHEPAIKLAEKLNEWLGGEYV-IFFSNSGSE  118 (452)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCCCCCT-------TSEEHHHHHHHHHHHHHHTSCEE-EEEESSHHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhcCCccc-------ccCCHHHHHHHHHHHHhCCCCce-EEEeCchHH
Confidence            44568887655   2   3589999999999865311111       11225778899999999997766 999999999


Q ss_pred             HHHHHHHHhhhhhc-C---CCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCCCC---CCC-------
Q 040741          130 SNNVSIKGVMHFYK-D---KKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGADG---IVN-------  185 (457)
Q Consensus       130 a~~~al~~~~~~~~-~---~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~~~---~~d-------  185 (457)
                      |++.+++.+..++. .   ++++|++..+.|.+.......+..          ....+..++.....   .-|       
T Consensus       119 A~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (452)
T 3n5m_A          119 ANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDV  198 (452)
T ss_dssp             HHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHH
Confidence            99999998874321 2   578888877776655444333210          01124445432111   112       


Q ss_pred             --HHHHHHhcC----CCceEEEEecc-ccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcc
Q 040741          186 --LDELRAAIR----PDTGLISVMAV-NNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNV  249 (457)
Q Consensus       186 --~~~le~~i~----~~t~li~i~~~-~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~  249 (457)
                        +++|+++++    +++++|+++.+ +| +|.+.|    +++|.++|++||+++|+|++|+ +|..  .  .+.....+
T Consensus       199 ~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~  277 (452)
T 3n5m_A          199 ECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKP  277 (452)
T ss_dssp             HHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCC
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCC
Confidence              899999987    66788999998 89 999887    9999999999999999999987 4322  1  12222346


Q ss_pred             cEEEeccccccC-C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       250 Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      |++++  +|.+| + .++|+++++++..+.+........... ......++..+++..++++.+.+  +...++.+++.+
T Consensus       278 di~t~--sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~-~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~  352 (452)
T 3n5m_A          278 DIITM--AKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRH-INTFGGNPAACALALKNLEIIEN--ENLIERSAQMGS  352 (452)
T ss_dssp             SEEEE--CGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCC-CCSSTTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHH
T ss_pred             CEEee--cccccCCCcceEEEEECHHHHHHHhhccCCCCccc-cCCCCCCHHHHHHHHHHHHHHHh--ccHHHHHHHHHH
Confidence            77754  59443 3 458999999877666533100000000 01124566677777778877654  344555555555


Q ss_pred             HHHHHHhhc---CCCeEEeCCCCCcccceEEEEEccc--c--------chHHHhcc--cCeEecccCccCCCCCChhHHH
Q 040741          328 RLLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAYV--E--------GESLLMGL--KEVAVSSGSACTSASLEPSYVL  392 (457)
Q Consensus       328 ~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l  392 (457)
                      ++++.|.+.   ++.+.....    .+.++.+.+...  .        ...+...+  +||.+.++..+.+         
T Consensus       353 ~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~---------  419 (452)
T 3n5m_A          353 LLLEQLKEEIGEHPLVGDIRG----KGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTA---------  419 (452)
T ss_dssp             HHHHHHHHHHTTCTTEEEEEE----SSSCEEEEEEEETTTTEECCHHHHHHHHHHHHHTTEECEECTTSST---------
T ss_pred             HHHHHHHHHHhcCCCeEEEEE----EEEEEEEEEecCCcccCCCCHHHHHHHHHHHHHCCcEEeecCcccC---------
Confidence            555555431   455443321    133444444211  0        12344444  6898887764432         


Q ss_pred             HHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          393 RALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       393 ~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                              ...+.|||+++..+|++++++++++|++++++
T Consensus       420 --------~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  451 (452)
T 3n5m_A          420 --------GYNNILTLAPPLVISSEEIAFVIGTLKTAMER  451 (452)
T ss_dssp             --------TCCCEEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred             --------CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence                    11389999999999999999999999998753

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.93  E-value=1.5e-24  Score=214.76  Aligned_cols=269  Identities=13%  Similarity=0.064  Sum_probs=194.6

Q ss_pred             HHHHHHHHHHHhh--ccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhhhhhcCC
Q 040741           71 PRVLDAMLPFYLS--RYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF---TSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        71 ~~v~~a~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~---t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      .+|+++|.+....  .++ + +..|.|+..   ...++++.+++++|.+.  .++   ++|||+|+.+++.+++    ++
T Consensus        32 ~~vl~a~~~~~~~~~~~~-~-~~~~~y~~~---~~~~Le~~lA~l~g~e~--alv~p~~~sGt~Ai~~al~all----~~  100 (409)
T 3jzl_A           32 AKVLDAFQENKVSDFHFH-P-STGYGYDDE---GRDTLERVYATVFKTEA--ALVRPQIISGTHAISTVLFGIL----RP  100 (409)
T ss_dssp             HHHHHHHHHTTCCGGGGC-C-CCTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTSCSHHHHHHHHHHHHC----CT
T ss_pred             HHHHHHHHHhhhhhhccC-C-CcCCCCChh---HHHHHHHHHHHHhCCCc--EEEECCCccHHHHHHHHHHHhc----CC
Confidence            5678888886532  232 2 224444433   47789999999999865  444   8999999999999988    89


Q ss_pred             CCEEEEcC-CCCcchHHHH-------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec----ccccccccc
Q 040741          146 KRHVITTQ-TEHKCVLDSC-------RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA----VNNEIGVIQ  213 (457)
Q Consensus       146 g~~vi~~~-~~h~~~~~~~-------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~----~~~~~G~~~  213 (457)
                      ||+|+++. +.|......+       ..++..|++++.++.+.++.+|+++++++++++|++|++++    ++|++|.+.
T Consensus       101 GD~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~~~tklV~i~~s~g~p~nptg~v~  180 (409)
T 3jzl_A          101 DDELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTKMIGIQRSRGYADRPSFTIE  180 (409)
T ss_dssp             TCEEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHH
T ss_pred             CCEEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhccCCCeEEEEECCCCCCCCCcCccc
Confidence            99999998 8898887655       34456699999999988899999999999999999999999    999999999


Q ss_pred             ChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCC---ceEEEEecCCCccccccccCCccc
Q 040741          214 PMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQE  288 (457)
Q Consensus       214 ~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~  288 (457)
                      |+++|.++|++  +|+++++|++++.+.........++|++++|+||.+|+.|   .|++++++++++++.......+..
T Consensus       181 ~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g  260 (409)
T 3jzl_A          181 KIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIG  260 (409)
T ss_dssp             HHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTG
T ss_pred             cHHHHHHHHHhhCCCCEEEEeCCcccccccCCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhcccccc
Confidence            99999999999  9999999999987764334445679999999999765432   499999887777665432211110


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA  359 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (457)
                        ...+.. .....++...+    ..+..++++..+++.++.+.|++ + ++.+...+.. ++..++.+.+.
T Consensus       261 --~~~g~~-~~~~~~~l~gl----~~~~~r~~~~~~~a~~la~~L~~-~-g~~v~p~~~~~~~~~i~~i~l~  323 (409)
T 3jzl_A          261 --REAGAS-LYSLLEMYQGF----FLAPHVTAQAIKGARFTAAMLAE-F-GVEADPVWDAPRTDLIQSVSFH  323 (409)
T ss_dssp             --GGCCCC-TTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSCCEEECS
T ss_pred             --cccccc-HHHHHHHHHHH----hhHHHHHHHHHHHHHHHHHHHHh-C-CCcccCCCCCCCccEEEEEEeC
Confidence              111111 11112222222    23466778888999999999999 5 4566543322 33335555554

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.93  E-value=6.5e-25  Score=214.56  Aligned_cols=289  Identities=17%  Similarity=0.140  Sum_probs=197.6

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC--EEEEcCCCCcchHHHHHHHHhcCcEEEEEeC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSCRHLQQEGFEITYLPV  178 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~--~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~  178 (457)
                      +...++++++++++|.+.  .++++|||+|+.++++++.    .+++  .|+++...|.+...........|++++.++.
T Consensus        47 ~~~~~l~~~la~~~~~~~--~i~~~~G~~a~~~al~~~~----~~gd~~~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~  120 (357)
T 3lws_A           47 AIIEPFEQKFADVLGMDD--AVFFPSGTMAQQVALRIWS----DETDNRTVAYHPLCHLEIHEQDGLKELHPIETILVGA  120 (357)
T ss_dssp             TTHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTCCEEEECTTCHHHHSSTTHHHHHSSCEEEECSC
T ss_pred             hHHHHHHHHHHHHhCCCc--EEEecCcHHHHHHHHHHHh----hcCCCcEEEecccceeeeeccchhhhccCcEEEEecC
Confidence            467889999999999854  5777899999999999887    5666  7888888887665532233445899988884


Q ss_pred             CCCCCCCHHHHHHhcCCCceEEEEecccccc-ccccC---hHHHHHHHHhcCCcEEEehhhhc------CCCcccCCCCc
Q 040741          179 GADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQP---MEEIGQICKEFKIPFHTDAAQAL------GKIPVDVEKWN  248 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~~t~li~i~~~~~~~-G~~~~---l~~i~~l~~~~~v~li~D~a~~~------g~~~~~~~~~~  248 (457)
                       .++.+|+++++++.  ++++|++++++||+ |.+.+   +++|.++|++||+++|+|++|..      +....... ..
T Consensus       121 -~~~~~d~~~l~~~~--~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~  196 (357)
T 3lws_A          121 -ADRLMTLDEIKALP--DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIA-GL  196 (357)
T ss_dssp             -TTSCCCHHHHHTCC--SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHH-TT
T ss_pred             -CCCCcCHHHHhcCc--CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHH-hc
Confidence             45679999999884  38999999999998 88886   88899999999999999999862      21111111 24


Q ss_pred             ccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       249 ~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      .|+++.|+||.+ ||.| |+++.+++.++++.......+.    .....+....+ ...+++.   .. +..++..++++
T Consensus       197 ~d~~~~s~sK~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~l~~---~~-~~~~~~~~~~~  266 (357)
T 3lws_A          197 FDSIYISFYKGLGGIAG-AILAGPAAFCQTARIWKRRYGG----DLISLYPYIVS-ADYYYEL---RK-DRMGQYYEQAK  266 (357)
T ss_dssp             SSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTC----CCSCCHHHHHH-HHHHHHH---HT-TCHHHHHHHHH
T ss_pred             CCEEEEeccccCCCCce-EEEEcCHHHHHHHHHHHHHhcC----CcccchHHHHH-HHHHHHH---HH-HHHHHHHHHHH
Confidence            688999999976 7777 9999887665555432211000    00011122222 2233332   22 33345677888


Q ss_pred             HHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCC
Q 040741          328 RLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMA  402 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~  402 (457)
                      ++.+.|++ ++++.+...+..  .+++.+.++..   +...+...|  +||.+.+|....+                  +
T Consensus       267 ~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~g~~~~~------------------~  325 (357)
T 3lws_A          267 QLAEQFNA-LPGVHTTPEVPV--SNMFHLHFDGQAADISPKLEQVQEETGLGFVGYLVDKD------------------G  325 (357)
T ss_dssp             HHHHHHHT-STTEEEESSSCS--SSEEEEEEESCHHHHHHHHHHHHHHHCEESCSCCEECS------------------S
T ss_pred             HHHHHHHh-CCCCeeccCCCc--ceEEEEEecCChHHHHHHHHHHHHhcCeEEecccccCC------------------C
Confidence            99999998 889988432222  44555666542   134555555  6999988753221                  2


Q ss_pred             CCeEEEecCCC---CCHHHHHHHHHHHHHHH
Q 040741          403 HTSIRFGIGRF---TTEAEVDRAIELTVKQV  430 (457)
Q Consensus       403 ~~~iRi~~~~~---~t~edid~~~~~l~~~~  430 (457)
                      ..++|++++..   .+++++++++++|.+++
T Consensus       326 ~~~~r~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          326 YCSTEISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             EEEEEEEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEecchhhhcCHHHHHHHHHHHHHhc
Confidence            25899998754   57899999999888764

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.93  E-value=1.5e-24  Score=230.27  Aligned_cols=303  Identities=14%  Similarity=0.046  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ..+.++++.+++++|.+. .+++++|+|+|+.+++.+++    ++||+|+++.++|.++..++...   |+++++++.+.
T Consensus       205 g~v~~~ee~la~l~G~d~-~i~~~~Gtt~a~~~~i~al~----~~GD~Vlv~~~~h~s~~~~~~~~---G~~~v~v~~~~  276 (755)
T 2vyc_A          205 GAFGESEKYAARVFGADR-SWSVVVGTSGSNRTIMQACM----TDNDVVVVDRNCHKSIEQGLMLT---GAKPVYMVPSR  276 (755)
T ss_dssp             HHHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHH---CCEEEEECCCB
T ss_pred             cHHHHHHHHHHHHhCCCc-eEEECCcHHHHHHHHHHHhc----CCCCEEEECCCchHHHHHHHHHc---CCEEEEEeCCC
Confidence            467889999999999863 47778888899999999998    89999999999999999987766   99999998764


Q ss_pred             C-----CCC-----CHHHHHHhcCC--Cce--------EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC
Q 040741          181 D-----GIV-----NLDELRAAIRP--DTG--------LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI  240 (457)
Q Consensus       181 ~-----~~~-----d~~~le~~i~~--~t~--------li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~  240 (457)
                      +     +.+     |+++|+++|++  +++        +++++++ |++|.+.|+++|+++|++||+++|+|+||+.+..
T Consensus       277 ~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~  355 (755)
T 2vyc_A          277 NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYAR  355 (755)
T ss_dssp             CTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGG
T ss_pred             CccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCEEEEECcCchhcc
Confidence            3     345     99999999964  444        8888887 6899999999999999999999999999974311


Q ss_pred             --cc--cCCC-Cc--ccE------EEeccccc-cCCCCceEEEEecC--CCc--cccccccCCccccccccCCCChhHHH
Q 040741          241 --PV--DVEK-WN--VSL------MSLSGHKI-YGPKGVGALYMRRR--PRI--RVEPLINGGGQERGIRSGTLPTPLIV  302 (457)
Q Consensus       241 --~~--~~~~-~~--~Di------~~~s~~K~-~g~~G~G~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~t~~~~~~~  302 (457)
                        +.  +... .+  +|+      ++.|+||. .|+.++|+++++++  ...  ++....      ..+.+++++...++
T Consensus       356 ~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~------~~~~s~sp~~~~ia  429 (755)
T 2vyc_A          356 FNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAY------MMHATTSPLYAICA  429 (755)
T ss_dssp             GCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHH------HHTSCSSCCHHHHH
T ss_pred             cCcccCCcchhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHH------HHhCCCCHHHHHHH
Confidence              10  1111 24  565      99999994 55667788988876  222  111111      12345789999999


Q ss_pred             HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHhhcCCC---------eEEeCCCCCc-----------------------
Q 040741          303 GFGSACEIAKKE-MDYDHKRITALHDRLLNGIKEKLDG---------VVVNGSMERR-----------------------  349 (457)
Q Consensus       303 al~~al~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~---------~~~~~~~~~~-----------------------  349 (457)
                      ++.+|++.+... .+.+.++..++++++++.|.+ +++         ++++++....                       
T Consensus       430 al~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  508 (755)
T 2vyc_A          430 SNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMAR-LYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD  508 (755)
T ss_dssp             HHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTTCCCCEESSCSEEECTTTCCEEEGGGSCHHHHHHCGG
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-ccccccccccceeeccCchhccccccccccccccccchhccchhh
Confidence            999998877653 678889999999999999988 777         7777643110                       


Q ss_pred             -----------------------ccceEEEEEcc-----------ccchHHHhcccCeEecccCccCCCCCChhHHHHHc
Q 040741          350 -----------------------YIGNLNLSFAY-----------VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRAL  395 (457)
Q Consensus       350 -----------------------~~~~~~~~~~~-----------~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~  395 (457)
                                             -+..+.+..++           .++..+...                      |+..
T Consensus       509 ~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~----------------------L~~~  566 (755)
T 2vyc_A          509 CWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAW----------------------LGRH  566 (755)
T ss_dssp             GTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHH----------------------HHTT
T ss_pred             hhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHH----------------------HHHC
Confidence                                   01122222221           111222222                      3334


Q ss_pred             CCCcc-CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741          396 GVDED-MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       396 g~~~~-~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~  441 (457)
                      |+..+ ...+.+|+.++..+|++++++++++|.++.+.+....|+++
T Consensus       567 gI~~e~~~~~~v~~~~~~g~t~~~~~~l~~al~~~~~~~~~~~~~~~  613 (755)
T 2vyc_A          567 GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQ  613 (755)
T ss_dssp             TCCCSEECSSEEEEECCTTCCTTTTHHHHHHHHHHHHHHHHTCBHHH
T ss_pred             CCEEeecCCCeEEEEECCCCCHHHHHHHHHHHHHHHHhhhcccchhh
Confidence            44332 24589999999999999999999999999887765555543

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=99.93  E-value=3.1e-24  Score=216.65  Aligned_cols=331  Identities=13%  Similarity=0.066  Sum_probs=221.0

Q ss_pred             EEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           59 LYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        59 i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      -|||+.+.      +..+|++.+++.+.+.......      ++....+...+++++++++++.+.++++|++|||+|++
T Consensus        76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~  149 (457)
T 3tfu_A           76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVM------FGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVE  149 (457)
T ss_dssp             EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCSCCC------SSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHH
T ss_pred             EEEECCCcHhhhccCCCCHHHHHHHHHHHHhccCcc------ccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHH
Confidence            68888664      2468999999999987642111      01112256789999999999877778999999999999


Q ss_pred             HHHHHhhhhhc---CCC-CEEEEcCCCCcchHHHHHHH-----------HhcCcEEEEEeCCC--CCCCCHHHHHHhcC-
Q 040741          133 VSIKGVMHFYK---DKK-RHVITTQTEHKCVLDSCRHL-----------QQEGFEITYLPVGA--DGIVNLDELRAAIR-  194 (457)
Q Consensus       133 ~al~~~~~~~~---~~g-~~vi~~~~~h~~~~~~~~~~-----------~~~G~~v~~v~~~~--~~~~d~~~le~~i~-  194 (457)
                      .+++.+..++.   .++ +.||+.+..|.+....+..+           ......+..++.+.  .+..|+++|+++++ 
T Consensus       150 ~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~  229 (457)
T 3tfu_A          150 VAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQ  229 (457)
T ss_dssp             HHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHh
Confidence            99998874321   133 46666555544433332222           00011333444332  22358899999997 


Q ss_pred             --CCceEEEEec-cccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--cCCCCcccEEEeccccccCC
Q 040741          195 --PDTGLISVMA-VNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--DVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       195 --~~t~li~i~~-~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~~~~~~~Di~~~s~~K~~g~  262 (457)
                        +++++|+++. ++|++|.+.|    +++|.++|++||+++|+|+++. +|..  .+  +.....+|++  |++|.+|.
T Consensus       230 ~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdii--t~sK~l~g  307 (457)
T 3tfu_A          230 HAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIM--CVGKALTG  307 (457)
T ss_dssp             HGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEE--EECGGGGT
T ss_pred             CCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEE--EEChhhhC
Confidence              6789999999 9999999987    9999999999999999999987 4322  11  1112346877  55594433


Q ss_pred             --CCceEEEEecCCCcccc---cc--ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh
Q 040741          263 --KGVGALYMRRRPRIRVE---PL--INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE  335 (457)
Q Consensus       263 --~G~G~l~~~~~~~~~~~---~~--~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~  335 (457)
                        .++|+++++++..+.+.   +.  ..+.       ..+.++..+++..++++.+.+  +...++.+++.+++++.|.+
T Consensus       308 G~~~lG~v~~~~~i~~~~~~~~~~~~~~~~-------t~~~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~  378 (457)
T 3tfu_A          308 GYLSLAATLCTADVAHTISAGAAGALMHGP-------TFMANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDT  378 (457)
T ss_dssp             TSSCCEEEEEEHHHHHHHHHSSSCSCCCCC-------TTTTCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGG
T ss_pred             CCcceEEEEEcHHHHHHhhccCCCceeEec-------CCCcCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHH
Confidence              35899999987665553   11  1111       125567777777778887655  46677788888888888876


Q ss_pred             c--CCCeEEeCCCCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          336 K--LDGVVVNGSMERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       336 ~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      .  ++.+..+..    .+.++.+.+.. .+..++...+  +||.+.+.                        .+.+||++
T Consensus       379 l~~~~~v~~vr~----~G~~~~i~l~~~~~~~~~~~~l~~~Gv~v~~~------------------------~~~lRi~p  430 (457)
T 3tfu_A          379 ARALPAVTDVRV----CGAIGVIECDRPVDLAVATPAALDRGVWLRPF------------------------RNLVYAMP  430 (457)
T ss_dssp             GGGSTTEEEEEE----CSSCEEEEESSCCCHHHHHHHHHHTTEECCCB------------------------TTEEEECC
T ss_pred             HhcCCCeeeeec----CCeEEEEEECCcccHHHHHHHHHHCCeEEEec------------------------CCEEEEEC
Confidence            1  344433211    14445555543 2345565555  68777542                        16899999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +..+|+||+++++++|++++++++
T Consensus       431 ~~~~t~eei~~~l~~L~~~l~~~~  454 (457)
T 3tfu_A          431 PYICTPAEITQITSAMVEVARLVG  454 (457)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999998754

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=99.93  E-value=1.3e-23  Score=212.65  Aligned_cols=335  Identities=13%  Similarity=0.076  Sum_probs=218.9

Q ss_pred             CCCcEEecCCCCC------CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.++.      ..+|++.+++.+.+.... .++.      .....+...+++++++++++.+.++++|++||
T Consensus        47 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gg  120 (459)
T 4a6r_A           47 SEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTF------FKTTHPAVVELSSLLAEVTPAGFDRVFYTNSG  120 (459)
T ss_dssp             TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCTT------SSSCCHHHHHHHHHHHHHSCTTCCEEEEESSH
T ss_pred             CCCCEEEECCCchhcccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHHhCCCCCCEEEEeCch
Confidence            3445688887642      357999999999987642 1111      01122577889999999998877889999999


Q ss_pred             HHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCC----CCCCC----
Q 040741          128 TESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGA----DGIVN----  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~----~~~~d----  185 (457)
                      ++|++.+++.+..+..    .+++.||+..+.|.+....+..+..          ....+..++.+.    +..+|    
T Consensus       121 seA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~  200 (459)
T 4a6r_A          121 SESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEF  200 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHH
Confidence            9999999999884321    1467888777766665544444311          011344455332    11134    


Q ss_pred             ----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741          186 ----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN  248 (457)
Q Consensus       186 ----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~  248 (457)
                          +++|+++++    +++++|+++.++++.|.+.+    +++|.++|++||+++|+|++|+ +|...  .  ......
T Consensus       201 ~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~  280 (459)
T 4a6r_A          201 GVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQ  280 (459)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence                788998886    46788889888888898887    9999999999999999999987 43221  1  111224


Q ss_pred             ccEEEeccccccCC--CCceEEEEecCCCcccc---ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVE---PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~---~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      +|++++|  |.++.  .++|+++++++..+.+.   +...+.       ..+.++..+++..++++.+.+  +...++.+
T Consensus       281 pdi~t~s--K~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~  349 (459)
T 4a6r_A          281 PDLFTAA--KGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGF-------TYSGHPVCAAVAHANVAALRD--EGIVQRVK  349 (459)
T ss_dssp             CSEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHH-------HHCSCHHHHHHHHHHHHHHHH--TCHHHHHH
T ss_pred             CCeeehh--hhhcCCCCCccceeeCHHHHHHhhcCCCcccCC-------CCCCCHHHHHHHHHHHHHHhc--chHHHHHH
Confidence            6777654  95433  35899999887666554   212111       124566677777778887654  33444444


Q ss_pred             -HHHHHHHHHH----hhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCC
Q 040741          324 -ALHDRLLNGI----KEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSA  384 (457)
Q Consensus       324 -~~~~~l~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~  384 (457)
                       ++.+++++.|    .+ ++.+..+..    .+.++.+.+....            ...+...+  +||.+.++.     
T Consensus       350 ~~~~~~~~~~l~~~l~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-----  419 (459)
T 4a6r_A          350 DDIGPYMQKRWRETFSR-FEHVDDVRG----VGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACG-----  419 (459)
T ss_dssp             HTHHHHHHHHHHHHHTT-CTTEEEEEE----ETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHHTTEECEEET-----
T ss_pred             HHHHHHHHHHHHHHHhc-CCCeEEEEE----EEEEEEEEEecCccccccccchHHHHHHHHHHHHHCCeEEecCC-----
Confidence             4444444444    44 555543321    1444455553211            22344444  688776542     


Q ss_pred             CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                         +.|||+++..++++++++++++|+++++++.+
T Consensus       420 -------------------~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~~  451 (459)
T 4a6r_A          420 -------------------DHIVSAPPLVMTRAEVDEMLAVAERCLEEFEQ  451 (459)
T ss_dssp             -------------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                               68999999999999999999999999988754

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=99.93  E-value=2.6e-23  Score=210.43  Aligned_cols=337  Identities=13%  Similarity=0.055  Sum_probs=218.9

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      .+.-|+|+.+.      +..+|++.+++.+.+..... .+.      .....+...+++++++++++.+.++++|++||+
T Consensus        49 ~G~~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~~~------~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGs  122 (460)
T 3gju_A           49 NGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAY------VGHGTEASITLAKMIIDRAPKGMSRVYFGLSGS  122 (460)
T ss_dssp             TCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHSCCCCC------TTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHH
T ss_pred             CCCEEEECCcchhhccCCCCCHHHHHHHHHHHHhccccccc------cccCCHHHHHHHHHHHhhCCCCcCEEEEeCchH
Confidence            44568887654      23579999999998876321 111      111125678899999999887777899999999


Q ss_pred             HHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHH----------hcCcEEEEEeCCC-----CCCCC----
Q 040741          129 ESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQ----------QEGFEITYLPVGA-----DGIVN----  185 (457)
Q Consensus       129 ~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~----------~~G~~v~~v~~~~-----~~~~d----  185 (457)
                      +|++.+++.+..+..    .+++.||+..+.|.+....+..+.          ..+..+..++.+.     +...+    
T Consensus       123 eA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  202 (460)
T 3gju_A          123 DANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQF  202 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHH
Confidence            999999998874321    145778776666655544444331          0112355565432     11122    


Q ss_pred             ----HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCc
Q 040741          186 ----LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWN  248 (457)
Q Consensus       186 ----~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~  248 (457)
                          +++|+++++    +++++|+++.+++++|.+.+    +++|.++|++||+++|+|++|+ +|...  .  ......
T Consensus       203 ~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~  282 (460)
T 3gju_A          203 SQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIK  282 (460)
T ss_dssp             HHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCC
Confidence                688998886    56789999999999998776    9999999999999999999998 44221  1  111224


Q ss_pred             ccEEEeccccccCC--CCceEEEEecCCCcccccc-------ccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHH
Q 040741          249 VSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPL-------INGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDY  317 (457)
Q Consensus       249 ~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~-------~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~  317 (457)
                      +|++++  +|.++.  .++|+++++++..+.+...       ..+       ...+.++..+++..++++.+.++  +++
T Consensus       283 pdi~t~--sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~-------~t~~~~~~~~aaa~aal~~~~~~~~~~~  353 (460)
T 3gju_A          283 PDLITI--AKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHG-------WTYSAHPICVAAGVANLELIDEMDLVTN  353 (460)
T ss_dssp             CSEEEE--CGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCC-------CTTTTCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeeee--ehhhcCCCCCeEEEEECHHHHHHHhcccccccccccC-------CCCCCCHHHHHHHHHHHHHHHhccHHHH
Confidence            677755  595543  3589999998766655321       111       11245667777777888876552  344


Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCC
Q 040741          318 DHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTS  383 (457)
Q Consensus       318 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~  383 (457)
                      ..+....+.+.+.+.+.+ ++.+..+..    .+.++.+.+....            ...+...+  +||.+.++.    
T Consensus       354 ~~~~~~~~~~~l~~~l~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~----  424 (460)
T 3gju_A          354 AGETGAYFRAELAKAVGG-HKNVGEVRG----DGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVIGRAMP----  424 (460)
T ss_dssp             HHHHHHHHHHHHHHHHTT-STTEEEEEE----ETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECS----
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCeEEEee----eeEEEEEEEccCccccccccchHHHHHHHHHHHHHCCeEEecCC----
Confidence            444444445555555555 555543321    1344445553211            12344444  688776542    


Q ss_pred             CCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          384 ASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       384 ~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                                        ..+.|||+++..+++|++++++++|+++++++.
T Consensus       425 ------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  457 (460)
T 3gju_A          425 ------------------QGDILGFAPPLCLTREQADIVVSKTADAVKSVF  457 (460)
T ss_dssp             ------------------SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence                              127999999999999999999999999998764

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=99.93  E-value=1.2e-23  Score=213.58  Aligned_cols=354  Identities=12%  Similarity=0.083  Sum_probs=225.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+.... +.+..       ...+...+++++++++++.+.+.++|++||
T Consensus        51 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~~~~~v~~~~sG  123 (476)
T 3i5t_A           51 EDGRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWY-------MATSPAARLAEKIATLTPGDLNRIFFTTGG  123 (476)
T ss_dssp             TTCCEEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCCTTT-------CBCHHHHHHHHHHHTTSSTTCCEEEEESSH
T ss_pred             CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcccCc-------cCCHHHHHHHHHHHhcCCCCcCEEEEeCch
Confidence            344568887654      2468999999999987632 11111       122577889999999998767789999999


Q ss_pred             HHHHHHHHHHhhhhhcC----CCCEEEEcCCCCcchHHHHHHHHh----------cCcEEEEEeCCC--CC-CCC-----
Q 040741          128 TESNNVSIKGVMHFYKD----KKRHVITTQTEHKCVLDSCRHLQQ----------EGFEITYLPVGA--DG-IVN-----  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~----~g~~vi~~~~~h~~~~~~~~~~~~----------~G~~v~~v~~~~--~~-~~d-----  185 (457)
                      ++|++.+++.+..++..    .++.||+..+.|.+....+..+..          ....+..++.+.  .. ..|     
T Consensus       124 seA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  203 (476)
T 3i5t_A          124 STAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFL  203 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHH
Confidence            99999999988754221    245677666555544443333210          011233444331  11 112     


Q ss_pred             ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cc--c-CCCCc
Q 040741          186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PV--D-VEKWN  248 (457)
Q Consensus       186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~--~-~~~~~  248 (457)
                         +++|+++++    +++++|+++.++++.|.+.+    +++|.++|++||+++|+|++|+ +|..  .+  . .....
T Consensus       204 ~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~  283 (476)
T 3i5t_A          204 DDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV  283 (476)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCC
Confidence               788998886    56789999999999998766    9999999999999999999997 4322  11  1 22234


Q ss_pred             ccEEEeccccccC-C-CCceEEEEecCCCccccccccCCc-cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHKIYG-P-KGVGALYMRRRPRIRVEPLINGGG-QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K~~g-~-~G~G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~  325 (457)
                      +|++++|  |.+| + .++|+++++++..+.+.+...... ... ......++..+++..++++.+.+  +...++.+++
T Consensus       284 pdi~t~s--K~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~-~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~  358 (476)
T 3i5t_A          284 PDIITFA--KGVTSGYVPLGGLAISEAVLARISGENAKGSWFTN-GYTYSNQPVACAAALANIELMER--EGIVDQAREM  358 (476)
T ss_dssp             CSEEEEC--GGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECC-CCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHH
T ss_pred             cchhhhh--hhhcCCCcCeEEEEECHHHHHHHhcCCcccccccc-cCCCCcCHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence            7887655  9543 3 458999998876666554210000 000 01124567777777788887765  5667778888


Q ss_pred             HHHHHHHHhh--cCCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChh
Q 040741          326 HDRLLNGIKE--KLDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPS  389 (457)
Q Consensus       326 ~~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~  389 (457)
                      .+++++.|++  .++.+..+.    ..+.++.+.+....            ...+...+  +||.+.+.           
T Consensus       359 ~~~l~~~L~~l~~~~~v~~v~----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~-----------  423 (476)
T 3i5t_A          359 ADYFAAALASLRDLPGVAETR----SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL-----------  423 (476)
T ss_dssp             HHHHHHHHHTTTTSTTEEEEE----EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHHTTEECEEE-----------
T ss_pred             HHHHHHHHHHHhcCCCeEEEE----ecCceeEEEEecCccccccccchhHHHHHHHHHHHHCCCEEEec-----------
Confidence            8888888875  133333321    12444445553211            22333434  57776542           


Q ss_pred             HHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHhcCC
Q 040741          390 YVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKEGID  448 (457)
Q Consensus       390 ~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~~~~  448 (457)
                                   .+.|||+++..++++++++++++|+++++++.+...+-++.++-.+
T Consensus       424 -------------g~~iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~~~~~~~~~~~~  469 (476)
T 3i5t_A          424 -------------GDLCVISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAVE  469 (476)
T ss_dssp             -------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCC--------
T ss_pred             -------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHhCcccccccccc
Confidence                         1699999999999999999999999999988776666665554443

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=99.92  E-value=1.2e-23  Score=213.07  Aligned_cols=336  Identities=13%  Similarity=0.076  Sum_probs=220.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|+|+.+.      +..+|++.+|+.+.+.... ..+..      ....+...+++++|+++++.+.++++|++||
T Consensus        52 ~~G~~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~------~~~~~~~~~lae~l~~~~~~~~~~v~~~~sG  125 (472)
T 3hmu_A           52 SEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFF------KTTHVPAIALAQKLAELAPGDLNHVFFAGGG  125 (472)
T ss_dssp             TTCCEEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCSCCCSSS------SEECHHHHHHHHHHHHHSCTTEEEEEEESSH
T ss_pred             CCCCEEEECCCchhhccCCCCCHHHHHHHHHHHHhcccccccc------ccCCHHHHHHHHHHHHhCCCCCCEEEEeCCH
Confidence            345568988654      2458999999999987642 11110      1122577789999999998767789999999


Q ss_pred             HHHHHHHHHHhhhhhc----CCCCEEEEcCCCCcchHHHHHHHHh---------cCcEEEEEeCCC----CCCCC-----
Q 040741          128 TESNNVSIKGVMHFYK----DKKRHVITTQTEHKCVLDSCRHLQQ---------EGFEITYLPVGA----DGIVN-----  185 (457)
Q Consensus       128 T~a~~~al~~~~~~~~----~~g~~vi~~~~~h~~~~~~~~~~~~---------~G~~v~~v~~~~----~~~~d-----  185 (457)
                      ++|++.+++.+..+..    .+++.||+..+.|.+....+..+..         ....+..++.+.    +...|     
T Consensus       126 seA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~~  205 (472)
T 3hmu_A          126 SEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFG  205 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcccCHHHHH
Confidence            9999999998875321    1356777666655554444333310         011345555432    10133     


Q ss_pred             ---HHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcc
Q 040741          186 ---LDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNV  249 (457)
Q Consensus       186 ---~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~  249 (457)
                         +++|+++++    +++++|+++.++++.|.+.|    +++|.++|++||+++|+|++|+ +|...  .  ......+
T Consensus       206 ~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~p  285 (472)
T 3hmu_A          206 LARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRP  285 (472)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCC
Confidence               788888886    56789999999999999987    9999999999999999999997 43221  1  1112246


Q ss_pred             cEEEeccccccCC--CCceEEEEecCCCcccccc--ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH-H
Q 040741          250 SLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPL--INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT-A  324 (457)
Q Consensus       250 Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~--~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~-~  324 (457)
                      |++++|  |.+|.  .++|+++++++..+.+.+.  ..++       ....++..+++..++++.+++  +...++.+ +
T Consensus       286 di~t~s--K~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~-------t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~  354 (472)
T 3hmu_A          286 HIMTIA--KGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGY-------TYSGHPVAAAVALENLRILEE--ENILDHVRNV  354 (472)
T ss_dssp             SEEEEC--GGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCC-------TTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHT
T ss_pred             ceeeec--hhhhcCCcceEEEEECHHHHHhcccCCccccC-------CCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHH
Confidence            887655  95443  3589999998766555211  1111       124566777777778887765  45666777 7


Q ss_pred             HHHHHHHHHhhc--CCCeEEeCCCCCcccceEEEEEcccc-------------chHHHhcc--cCeEecccCccCCCCCC
Q 040741          325 LHDRLLNGIKEK--LDGVVVNGSMERRYIGNLNLSFAYVE-------------GESLLMGL--KEVAVSSGSACTSASLE  387 (457)
Q Consensus       325 ~~~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l--~~i~~~~g~~~~~~~~~  387 (457)
                      +.+++++.|++.  ++.+..+.    ..+.++.+.+....             ...+...+  +||.+.++.        
T Consensus       355 ~~~~l~~~L~~l~~~~~v~~vr----~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g--------  422 (472)
T 3hmu_A          355 AAPYLKEKWEALTDHPLVGEAK----IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVG--------  422 (472)
T ss_dssp             HHHHHHHHHHGGGGSTTEEEEE----EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHHTTBCCEEET--------
T ss_pred             HHHHHHHHHHHHhcCCCeEEEE----ecCceEEEEEecCccccccccchhHHHHHHHHHHHHHCCcEEEecC--------
Confidence            777777777551  34343321    12444455553210             12333333  576665431        


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                                      ++|||+++..+|++|+++++++|+++++++.+
T Consensus       423 ----------------~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~~~  454 (472)
T 3hmu_A          423 ----------------DRMIISPPLVITPAEIDEMFVRIRKSLDEAQA  454 (472)
T ss_dssp             ----------------TEEEECCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                            69999999999999999999999999987653

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.92  E-value=4e-25  Score=216.20  Aligned_cols=311  Identities=16%  Similarity=0.151  Sum_probs=206.0

Q ss_pred             CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           69 VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        69 ~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      ++|++.+++.+....         ..++  ..+...++++++++++|.+.  .++++|||+|+.++++++.    .+++.
T Consensus        27 ~~p~v~~ai~~~~~~---------~~~~--~~~~~~~l~~~la~~~~~~~--~i~~~~g~~a~~~a~~~~~----~~g~~   89 (359)
T 3pj0_A           27 VLTEALQNIDDNLES---------DIYG--NGAVIEDFETKIAKILGKQS--AVFFPSGTMAQQIALRIWA----DRKEN   89 (359)
T ss_dssp             HHHHHTTTSCTTCBC---------CBTT--BSHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHH----HHHTC
T ss_pred             CCHHHHHHHHhhccc---------Cccc--CCHHHHHHHHHHHHHhCCCc--EEEeCCHHHHHHHHHHHHH----hcCCC
Confidence            478888887773321         1112  23578899999999999865  5777899999999999887    56665


Q ss_pred             --EEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccc-ccccChHH---HHHHH
Q 040741          149 --VITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEI-GVIQPMEE---IGQIC  222 (457)
Q Consensus       149 --vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~-G~~~~l~~---i~~l~  222 (457)
                        |+++...|.+...........|.+++.++. .++.+|+++++++ .+++++|++++++|++ |.+.|.++   |.++|
T Consensus        90 ~vvi~~~~~~~~~~~~~~~~~~~g~~~~~v~~-~~~~~d~~~l~~~-~~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~  167 (359)
T 3pj0_A           90 RRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-REPVSSVLIELPQREIGGQLPAFEELEKISEYC  167 (359)
T ss_dssp             CEEEECTTCHHHHSSTTHHHHHHCCEEEECSC-TTSCCCHHHHHTC-SSCCSEEEEESSBGGGTSBCCCHHHHHHHHHHH
T ss_pred             cEEEEeccceeeehhcchHHHhcCceEEecCC-cCCCcCHHHHHhc-cCCceEEEEEecccCCCcccCCHHHHHHHHHHH
Confidence              667766665543322121233999999887 4678999999998 8889999999999997 78888555   49999


Q ss_pred             HhcCCcEEEehhhhcCCC------cccCCCCcccEEEecccccc-CCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          223 KEFKIPFHTDAAQALGKI------PVDVEKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       223 ~~~~v~li~D~a~~~g~~------~~~~~~~~~Di~~~s~~K~~-g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ++||+++|+|+++..+..      +..+. .+.|+++.|+||.+ ++.| |+++.+++.++++.......+.    ....
T Consensus       168 ~~~~~~li~D~a~~~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~~~~~~~~~~~~~----~~~~  241 (359)
T 3pj0_A          168 HEQGISLHLDGARLWEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFVQEAKIWKRRYGG----DLIS  241 (359)
T ss_dssp             HHHTCEEEEEETTCGGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHHHHHHHHHHHTTC----CCSC
T ss_pred             HHcCCEEEEECcchhcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHHHHHHHHHHHhCC----Ccch
Confidence            999999999999865432      11111 25689999999955 4555 8888887766665432211000    0001


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc---cchHHHhcc--
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV---EGESLLMGL--  370 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--  370 (457)
                      .+....+++ .+++   ... +..++..++++++.+.|++ ++++.+...+..  .+++.+.++..   +...+...+  
T Consensus       242 ~~~~~~a~~-~~l~---~~~-~~~~~~~~~~~~l~~~L~~-~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~  313 (359)
T 3pj0_A          242 LYPYILSAD-YYFE---KRI-GKMAEYFEAAKGLAERFNS-CSGVKTVPEVPV--SNMFHVYFENSADEIGAILTKIQDE  313 (359)
T ss_dssp             CHHHHHHHH-HHHH---HHG-GGHHHHHHHHHHHHHHHHT-STTEEEESSSCS--SSEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHH-HHHH---HHH-HHhHHHHHHHHHHHHHHhh-CCCceeeccCCc--ceEEEEEecCccchhHHHHHHHHHh
Confidence            111122211 2322   222 4445678888999999999 889988532222  45556666532   234555555  


Q ss_pred             cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC---CCHHHHHHHHHHHHHH
Q 040741          371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF---TTEAEVDRAIELTVKQ  429 (457)
Q Consensus       371 ~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~---~t~edid~~~~~l~~~  429 (457)
                      +||.+.+|..+..                 ...+++|++++..   .+.++++.++++|.+.
T Consensus       314 ~GV~v~~g~~~~~-----------------~~~~~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          314 TGVGISGYLQEKS-----------------ADVCAFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             HCEECCSCCEEEE-----------------TTEEEEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             cCcEecCCccccC-----------------CCceEEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            6999988854321                 1236899988643   4788898888888765

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.92  E-value=3.2e-25  Score=219.66  Aligned_cols=280  Identities=16%  Similarity=0.160  Sum_probs=198.9

Q ss_pred             HHHHHHHHHHhCC-----CC-CcEEEeCChHHHHHHHHHHhhhhhcCCCC----EEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741          104 ETARSQIADLIGA-----SP-KEIIFTSGATESNNVSIKGVMHFYKDKKR----HVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus       104 ~~~~~~la~~~g~-----~~-~~i~~t~g~T~a~~~al~~~~~~~~~~g~----~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      .++++.++++++.     ++ +++++|+|+++++.+++.++.    ++||    +|+++.++|+.+...++..   |.++
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~----~~Gd~~~~~Vlv~~P~y~~~~~~~~~~---g~~~  143 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS----SLARSQPVSVVAAAPFYSTYVEETTYV---RSGM  143 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH----HTSSSSSEEEEECSSCCTHHHHHHHTT---CBTT
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc----CCCCCCcceEEEcCCCchhHHHHHHHc---CCeE
Confidence            6788888888872     34 589999999999999999998    7899    9999999999988777655   8888


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-cccCCCCcccEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-PVDVEKWNVSLM  252 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~  252 (457)
                      +.++++.++. +        .+++++|++++++||||.+.+  +|++.++++++++|+|++|..+.. ++.. ..+.+++
T Consensus       144 ~~~~~d~~~l-~--------~~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~~~~l~~-~~~~~i~  211 (391)
T 3bwn_A          144 YKWEGDAWGF-D--------KKGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPHYTPITR-RQDHDIM  211 (391)
T ss_dssp             EEEEEESTTC-C--------CCSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTTTSCCCC-CBCCSEE
T ss_pred             EEecCCHHHc-C--------CCCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCCCCcccc-CCCCeEE
Confidence            8888764431 1        357899999999999999986  444322222399999999985422 2222 3457899


Q ss_pred             EeccccccCCCC--ceEEEE-ecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH----------HhhHHHH
Q 040741          253 SLSGHKIYGPKG--VGALYM-RRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK----------KEMDYDH  319 (457)
Q Consensus       253 ~~s~~K~~g~~G--~G~l~~-~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~----------~~~~~~~  319 (457)
                      +.|+||.||++|  +|++++ +++.++++.....       ....+.+.....++..+++...          ..+++..
T Consensus       212 ~~S~SK~~g~~GlRiG~~~~~~~~l~~~l~~~~~-------~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~  284 (391)
T 3bwn_A          212 LFTFSKITGHAGSRIGWALVKDKEVAKKMVEYII-------VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGR  284 (391)
T ss_dssp             EEEHHHHHSCGGGCEEEEEECCHHHHHHHHHHHH-------HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHH
T ss_pred             EEechhhcCCCccceEEEEecCHHHHHHHHHHhc-------ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHH
Confidence            999999998777  599998 6555555543332       1123556666666666776542          3478888


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeCCCCCc----------ccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCC
Q 040741          320 KRITALHDRLLNGIKEKLDGVVVNGSMERR----------YIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLE  387 (457)
Q Consensus       320 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~  387 (457)
                      ++++++++++.+.|++ ++++.+..+....          .+.++.+.++.  .+.+...+  +||.+.+|..|..    
T Consensus       285 ~~~~~~~~~l~~~L~~-~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~--~~~~~~~l~~~gV~v~pg~~fg~----  357 (391)
T 3bwn_A          285 EMMKNRWEKLREVVKE-SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKE--ETDLVSELRRHKVMSRAGERCGS----  357 (391)
T ss_dssp             HHHHHHHHHHHHHHHT-CSSEECCCCCCEEETTTTEEECCCCSEEEEEESS--SCCHHHHHHHTTEECEEGGGGTC----
T ss_pred             HHHHHHHHHHHHHHHh-CCCcccccCCccccccccccCCCcceEEEecCCc--HHHHHHHHHHCCEEEccCCCCCC----
Confidence            9999999999999999 7787765432211          11234455542  23333333  6999999986631    


Q ss_pred             hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          388 PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       388 ~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                                    ..+++||+++.  +++++++++++|++++++
T Consensus       358 --------------~~~~iRis~~~--~~e~i~~~~~~L~~~~~~  386 (391)
T 3bwn_A          358 --------------DKKHVRVSMLS--REDVFNVFLERLANMKLI  386 (391)
T ss_dssp             --------------CTTEEEEESCS--CHHHHHHHHHHHHSCC--
T ss_pred             --------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence                          13799999984  789999999999988754

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=99.92  E-value=3.1e-23  Score=208.28  Aligned_cols=324  Identities=15%  Similarity=0.150  Sum_probs=211.7

Q ss_pred             CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.++.      ..+|++.+++.+.+.....+        ++ ..+...+++++++++++ ++++++|++|||
T Consensus        52 ~~g~~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~--------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~sGs  121 (434)
T 3l44_A           52 VDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLY--------GT-PTALEVKFAKMLKEAMP-ALDKVRFVNSGT  121 (434)
T ss_dssp             TTCCEEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSCC--------SS-CCHHHHHHHHHHHHHCT-TCSEEEEESSHH
T ss_pred             CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCcCC--------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCchH
Confidence            3455689987654      25899999999998763211        11 12567788899999997 677899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC-----------------cEEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG-----------------FEITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G-----------------~~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++++++.+..+  .++++||+..+.|.+....+..+...+                 ..+..++.+     |+++|++
T Consensus       122 ea~~~ai~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~  194 (434)
T 3l44_A          122 EAVMTTIRVARAY--TGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKE  194 (434)
T ss_dssp             HHHHHHHHHHHHH--HCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHH
Confidence            9999999987632  367888887776655433222110000                 123333322     8999999


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcC---CCc-ccCCCCcccEEEecccccc
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALG---KIP-VDVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g---~~~-~~~~~~~~Di~~~s~~K~~  260 (457)
                      +++   +++++|+++++++++|.+.|    +++|.++|++||+++|+|++|+..   ... .+.....+|+++  ++|.+
T Consensus       195 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~  272 (434)
T 3l44_A          195 ALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGGAQDLLGVTPDLTA--LGKVI  272 (434)
T ss_dssp             HHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTSSSSCHHHHHTCCCSEEE--EEGGG
T ss_pred             HHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccceeccccHHHHHcCCCCCeee--hhhhh
Confidence            987   56788999999888999988    999999999999999999999732   110 111122467665  45955


Q ss_pred             C-CCCceEEEEecCCCcccccc---ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc
Q 040741          261 G-PKGVGALYMRRRPRIRVEPL---INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK  336 (457)
Q Consensus       261 g-~~G~G~l~~~~~~~~~~~~~---~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~  336 (457)
                      | +.++|+++++++.++.+.+.   ..+       ...+.++..+++..++++.+.+  +...++.+++.+++++.|.+.
T Consensus       273 ~~G~~iG~~~~~~~i~~~~~~~~~~~~~-------~t~~~~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~  343 (434)
T 3l44_A          273 GGGLPIGAYGGKKEIMEQVAPLGPAYQA-------GTMAGNPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQ  343 (434)
T ss_dssp             GTTSSCEEEEECHHHHTTBTTTSSBCCC-------CTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCeeeEEEcHHHHHhhccCCCcccC-------CCCCcCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHH
Confidence            4 34589999988766665442   111       1125566777777777776654  455566666666666666541


Q ss_pred             ---CCCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          337 ---LDGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       337 ---~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                         ++......    ..+.++.+.+....              ...+...+  +||.+.++..                 
T Consensus       344 ~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-----------------  402 (434)
T 3l44_A          344 AAKHNIDITLN----RLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKY-----------------  402 (434)
T ss_dssp             HHHTTCCEEEE----EETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHHTTEECCSSTT-----------------
T ss_pred             HHhCCCCEEEE----eeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHHCCeEEeecCC-----------------
Confidence               23222111    12455555553211              13344444  6888776531                 


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                            ..+|++  ..++++|+++++++|+++++++++
T Consensus       403 ------~~~rl~--~~~t~e~i~~~l~~l~~~l~~~~~  432 (434)
T 3l44_A          403 ------EAWFLT--TEHTKEDIEYTIEAVGRAFAALAD  432 (434)
T ss_dssp             ------CCEECC--TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------CcEEEe--cccCHHHHHHHHHHHHHHHHHHHh
Confidence                  467875  467999999999999999988754

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.92  E-value=8.1e-24  Score=210.26  Aligned_cols=268  Identities=13%  Similarity=0.037  Sum_probs=193.8

Q ss_pred             HHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE--eCChHHHHHHHHHHhhhhhcCCC
Q 040741           71 PRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF--TSGATESNNVSIKGVMHFYKDKK  146 (457)
Q Consensus        71 ~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~--t~g~T~a~~~al~~~~~~~~~~g  146 (457)
                      ++|+++|.+...  ..++ + +..|.|+..   ...++++.+++++|++.. +++  ++|||+|+.+++.+++    ++|
T Consensus        46 ~~Vl~A~~~~~~~~~~~~-~-~~gy~y~~~---~~~~Le~~lA~l~g~e~a-lv~p~~~sGt~Ai~~al~all----~pG  115 (427)
T 3i16_A           46 LKVLNAFQEERISEAHFT-N-SSGYGYGDI---GRDSLDAVYARVFNTESA-LVRPHFVNGTHALGAALFGNL----RPG  115 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSC-C-CCTTCTTCH---HHHHHHHHHHHHHTCSEE-EEETTCCSHHHHHHHHHHHHC----CTT
T ss_pred             HHHHHHHHHhchhHHhcC-C-CCCCCCCHH---HHHHHHHHHHHHhCCcce-EEeCCCccHHHHHHHHHHHHh----CCC
Confidence            468888887642  2232 2 223444433   478899999999998753 443  8999999999999998    899


Q ss_pred             CEEEEcC-CCCcchHHHH--------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEec----ccccccc
Q 040741          147 RHVITTQ-TEHKCVLDSC--------RHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMA----VNNEIGV  211 (457)
Q Consensus       147 ~~vi~~~-~~h~~~~~~~--------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~----~~~~~G~  211 (457)
                      |+|+++. +.|.+....+        ..+...|++++.++.+.+|.+|+++++++++  +++++|++++    ++||+|.
T Consensus       116 D~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~s~~~p~nptg~  195 (427)
T 3i16_A          116 NTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALL  195 (427)
T ss_dssp             CEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEECSCCSSSSCCCC
T ss_pred             CEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEcCCCCCCCCccc
Confidence            9999998 8898887555        3445569999999998888999999999998  8999999999    9999999


Q ss_pred             ccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC---CCceEEEEecCCCccccccc--cC
Q 040741          212 IQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP---KGVGALYMRRRPRIRVEPLI--NG  284 (457)
Q Consensus       212 ~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~---~G~G~l~~~~~~~~~~~~~~--~~  284 (457)
                      +.|+++|+++|++  +|+++++|++|+.+.........++|++++|+||.+|+   ...|++++++++++++....  .+
T Consensus       196 i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~  275 (427)
T 3i16_A          196 IEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTDVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPG  275 (427)
T ss_dssp             HHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCc
Confidence            9999999999999  99999999999977643344456789999999997665   33599999987777665532  11


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA  359 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (457)
                      .+..    . .+.......   ++..+ ..+..+.++..+++.++.+.|++ ++ +.++..+.. ++..++.+.+.
T Consensus       276 ~g~~----~-~~~~~~a~~---~l~gl-~~~~~r~~~~~~~a~~la~~L~~-~g-~~V~p~~~~~~~~~i~~i~l~  340 (427)
T 3i16_A          276 IGGE----C-GSTFGVVRS---MYQGL-FLAPHISMEALKGAILCSRIMEL-AG-FEVMPKYDEKRSDIIQSIKFN  340 (427)
T ss_dssp             TGGG----C-CCCTTCHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHH-TT-CEEESCTTSCCSSSCEEEECS
T ss_pred             cCcc----C-CccHHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHh-CC-CeecCCCCCCCccEEEEEEEC
Confidence            1110    0 111110111   12111 23467788899999999999999 54 455533322 22335556654

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=99.92  E-value=3.5e-22  Score=201.60  Aligned_cols=334  Identities=13%  Similarity=0.055  Sum_probs=213.5

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T  128 (457)
                      .+.-|+|+.++      +..+|++.+++.+.+.......      ......+...+++++++++++.+ +++++||+|||
T Consensus        62 ~G~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~~~~------~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGs  135 (453)
T 4ffc_A           62 DGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTC------FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGA  135 (453)
T ss_dssp             TSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCCT------TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHH
T ss_pred             CCCEEEEcCCCcccCcCCCCCHHHHHHHHHHHHhccccc------cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHH
Confidence            44568888764      2358999999999987642111      01112356778999999999864 46799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh------cC-----cEEEEEeCCCC----CCCC--------
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ------EG-----FEITYLPVGAD----GIVN--------  185 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~------~G-----~~v~~v~~~~~----~~~d--------  185 (457)
                      +|++.+++.+..+  ..++.|++..+.|.+....+..+..      .+     ..+..++.+..    ...+        
T Consensus       136 eA~~~alk~a~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  213 (453)
T 4ffc_A          136 EAVENAIKVARLA--TGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRA  213 (453)
T ss_dssp             HHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--cCCCEEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHH
Confidence            9999999876632  2456777766665555544443311      01     14556665411    1112        


Q ss_pred             HHHHHHhcCC-CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCc--c--cCCCCcccEEEec
Q 040741          186 LDELRAAIRP-DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIP--V--DVEKWNVSLMSLS  255 (457)
Q Consensus       186 ~~~le~~i~~-~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~--~--~~~~~~~Di~~~s  255 (457)
                      ++.|++++.+ ++++|+++.+++..|.+.+    +++|.++|++||+++|+|++|+ +|...  .  +.....+|++++ 
T Consensus       214 ~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~-  292 (453)
T 4ffc_A          214 ISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTM-  292 (453)
T ss_dssp             HHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE-
T ss_pred             HHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhh-
Confidence            4667777764 4567777777777778876    9999999999999999999997 43221  1  111224577655 


Q ss_pred             cccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-
Q 040741          256 GHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI-  333 (457)
Q Consensus       256 ~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l-  333 (457)
                       +|.+|+ -++|+++++++..+.+.+...+.       ....++..+++..++++.+.+  +...++.+++.+++++.| 
T Consensus       293 -sK~~~~G~~~G~~~~~~~i~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~  362 (453)
T 4ffc_A          293 -AKGIAGGMPLSAVTGRAELMDAVYAGGLGG-------TYGGNPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLS  362 (453)
T ss_dssp             -CGGGGTTSSCEEEEEEHHHHTTSCTTSSCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHH
T ss_pred             -hhhhcCCcCeEEEEECHHHHhhhcccCcCC-------CCCcCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHH
Confidence             595543 34899999887766665433221       124566667777777877654  234444555555555444 


Q ss_pred             ---hhcCCCeEEeCCCCCcccceEEEEEcc-----c---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          334 ---KEKLDGVVVNGSMERRYIGNLNLSFAY-----V---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       334 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                         .+ ++.+..+..    .+.++.+.+..     .   ....+...+  +||.+.++..                    
T Consensus       363 ~~~~~-~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~--------------------  417 (453)
T 4ffc_A          363 ALAEE-VDIIGEVRG----RGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGT--------------------  417 (453)
T ss_dssp             HHHHH-CSSEEEEEE----ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECCEECT--------------------
T ss_pred             HHHhh-CCCeEEEEe----eceEEEEEEecCcccCCCHHHHHHHHHHHHhCCCEEecCCC--------------------
Confidence               44 555543321    14455555532     1   123344444  6888876531                    


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                       ..+.+||+++..++++++++++++|+++++++.
T Consensus       418 -~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~  450 (453)
T 4ffc_A          418 -FGNVIRLLPPLVIGDDLLDEGITALSDIIRAKA  450 (453)
T ss_dssp             -TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence             126899999999999999999999999998753

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.91  E-value=3.9e-23  Score=205.36  Aligned_cols=266  Identities=12%  Similarity=0.037  Sum_probs=190.8

Q ss_pred             HHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEE---eCChHHHHHHHHHHhhhhhcCC
Q 040741           71 PRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIF---TSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        71 ~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~---t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      ++|++++.+.....  +++  ...+.|+..   ...++++.+++++|.+.  .++   ++|||+|+.+++.+++    ++
T Consensus        47 ~~Vl~a~~~~~~~~~~~~~--~~gy~Y~~~---g~~~Le~~lA~l~g~e~--alv~p~~~sGt~A~~~al~all----~p  115 (427)
T 3hvy_A           47 LKVLKAFQEERISESHFTN--SSGYGYNDI---GRDSLDRVYANIFNTES--AFVRPHFVNGTHAIGAALFGNL----RP  115 (427)
T ss_dssp             HHHHHHHHHTTCCGGGSCC--CCTTCTTCH---HHHHHHHHHHHHHTCSE--EEEETTCCSHHHHHHHHHHHTC----CT
T ss_pred             HHHHHHHHHHHHHHHhccc--CcCCCCCch---hHHHHHHHHHHHhCCCc--eEEeCCCCcHHHHHHHHHHHhc----CC
Confidence            67888888864432  222  123333332   37889999999999875  455   8899999999999998    89


Q ss_pred             CCEEEEcC-CCCcchHHHH--------HHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC--CCceEEEEec----cccccc
Q 040741          146 KRHVITTQ-TEHKCVLDSC--------RHLQQEGFEITYLPVGADGIVNLDELRAAIR--PDTGLISVMA----VNNEIG  210 (457)
Q Consensus       146 g~~vi~~~-~~h~~~~~~~--------~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~--~~t~li~i~~----~~~~~G  210 (457)
                      ||+|++.. +.|......+        ..+...|++++.++. .++.+|+++++++++  +++++|++++    ++||+|
T Consensus       116 GD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~~~tklV~i~~s~gyp~nptg  194 (427)
T 3hvy_A          116 NDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGVKYKMVDL-KDGKVDINTVKEELKKDDSIKLIHIQRSTGYGWRKSL  194 (427)
T ss_dssp             TCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHCTTEEEEEEESSCCSSSSCCC
T ss_pred             CCEEEEeCCCCchhHHHHhccccchhhhHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCCCCCEEEEEECCCCCCCCccc
Confidence            99999998 8888776443        334456999999998 678899999999998  8999999999    999999


Q ss_pred             cccChHHHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC---CCceEEEEecCCCccccccc--c
Q 040741          211 VIQPMEEIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP---KGVGALYMRRRPRIRVEPLI--N  283 (457)
Q Consensus       211 ~~~~l~~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~---~G~G~l~~~~~~~~~~~~~~--~  283 (457)
                      .+.++++|+++|++  +|+++++|++|+.+.........++|++++|+||.+|+   ...|++++++++++++....  .
T Consensus       195 ~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~~~p~~~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~  274 (427)
T 3hvy_A          195 RIAEIAEIIKSIREVNENVIVFVDNCYGEFVEEKEPTDVGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVP  274 (427)
T ss_dssp             CHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSSSCGGGGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCT
T ss_pred             cHHHHHHHHHHHHHhCCCCEEEEECCccccccCCCCcccCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcC
Confidence            99999999999999  89999999999877633333455789999999997654   22499999887777665532  2


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA  359 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (457)
                      +.+.    .. .++......+...+    ..++.+.++..+++.++.+.|++ + ++.+...+.. ++..++.+.+.
T Consensus       275 ~~g~----~~-~~~~~~a~~~~~gl----~~~~~r~~~~~~~a~~la~~L~~-~-g~~V~p~~~~~~~~li~~~~l~  340 (427)
T 3hvy_A          275 GIGG----EC-GSTFGVMRSLYEGL----FMAPHVTIEAVKGAVFCARIMEL-A-GFDVLPKYNDKRTDIIQAIKFN  340 (427)
T ss_dssp             TTGG----GC-CCCTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-T-TCEEESCTTSCCSSSEEEEECS
T ss_pred             Cccc----cc-CCCHHHHHHHHHhH----hHHHHHHHHHHHHHHHHHHHHHh-C-CCeecCCCCCCCceEEEEEeCC
Confidence            2111    11 11111111111122    23456778888999999999999 5 4466543322 23335555554

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=99.91  E-value=3.7e-22  Score=201.32  Aligned_cols=334  Identities=13%  Similarity=0.078  Sum_probs=211.5

Q ss_pred             CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741           55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~  127 (457)
                      ..+.-|||+.++.      ..+|++.+++.+.+.... +..     ......+...+++++++++++.+ +++++||+||
T Consensus        58 ~~g~~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~~-~~~-----~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sG  131 (451)
T 3oks_A           58 VDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFT-HTC-----FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSG  131 (451)
T ss_dssp             TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHTTCS-CCT-----TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSH
T ss_pred             CCCCEEEEcCCCccccccCCCCHHHHHHHHHHHHhcc-ccc-----CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcH
Confidence            3455688887642      358999999999986531 111     01112256778999999999754 4679999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHh------cC-----cEEEEEeCCCC------C-------C
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ------EG-----FEITYLPVGAD------G-------I  183 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~------~G-----~~v~~v~~~~~------~-------~  183 (457)
                      |+|++.+++.+..+  ..++.|++....|.+....+..+..      .+     ..+..++.+..      |       .
T Consensus       132 seA~~~Alk~a~~~--~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  209 (451)
T 3oks_A          132 SEAVENAVKIARSH--THKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGE  209 (451)
T ss_dssp             HHHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHH
T ss_pred             HHHHHHHHHHHHHh--cCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhH
Confidence            99999999887632  2456777766665555544443310      01     14566665411      0       0


Q ss_pred             CCHHHHHHhc----C-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--c--ccCCCCcc
Q 040741          184 VNLDELRAAI----R-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--P--VDVEKWNV  249 (457)
Q Consensus       184 ~d~~~le~~i----~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~--~~~~~~~~  249 (457)
                      .+++.+++.+    . +++++|+++.++++.|.+.+    +++|.++|++||+++|+|++|+ +|..  .  .+.....+
T Consensus       210 ~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~p  289 (451)
T 3oks_A          210 LAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDP  289 (451)
T ss_dssp             HHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCC
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCC
Confidence            1344444443    3 35678888888887888877    9999999999999999999997 3321  1  11112246


Q ss_pred             cEEEeccccccCC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       250 Di~~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      |++  |++|.+|+ -++|+++++++..+.+.+...+.       ..+.++..+++..++++.+.+  +...++.+++.++
T Consensus       290 di~--t~sK~l~~G~~iG~v~~~~~~~~~~~~~~~~~-------t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~  358 (451)
T 3oks_A          290 DLI--VTAKGIAGGLPLSAVTGRAEIMDSPHVSGLGG-------TYGGNPIACAAALATIETIES--EGLVARAQQIEKI  358 (451)
T ss_dssp             SEE--EECGGGGTTSSCEEEEEEHHHHTCSCTTSBCC-------SSSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred             Cee--eehhhhhCCcceEEEEECHHHHhhhcCCCcCC-------CCCCCHHHHHHHHHHHHHHhh--hhHHHHHHHHHHH
Confidence            777  45595543 34899999887766665433222       124566677777778877655  2444555555555


Q ss_pred             HHHHHhhc---CCCeEEeCCCCCcccceEEEEEcc-----c---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHc
Q 040741          329 LLNGIKEK---LDGVVVNGSMERRYIGNLNLSFAY-----V---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRAL  395 (457)
Q Consensus       329 l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~  395 (457)
                      +++.|.+.   ++.+..+..    .+.++.+.+..     .   ....+...+  +||.+.++...              
T Consensus       359 l~~~L~~~~~~~~~~~~~~~----~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~--------------  420 (451)
T 3oks_A          359 MKDRLGRLQAEDDRIGDVRG----RGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTY--------------  420 (451)
T ss_dssp             HHHHHHHHHHHCTTEEEEEE----ETTEEEEEEBSTTSCCBCHHHHHHHHHHHHHTTEECEEECTT--------------
T ss_pred             HHHHHHHHHhhCCCeEEEEE----eeEEEEEEEecCccCCCCHHHHHHHHHHHHhCCcEEecCCCC--------------
Confidence            55554431   555433221    14455555522     1   123344444  68888765311              


Q ss_pred             CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          396 GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       396 g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                             .+.+||+++..++++++++++++|++++++
T Consensus       421 -------~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~  450 (451)
T 3oks_A          421 -------GNVVRFLPPLSIGDDLLNEGLDVLEEVLRG  450 (451)
T ss_dssp             -------SCEEEECCCTTCCHHHHHHHHHHHHHHHHC
T ss_pred             -------CCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence                   268999999999999999999999998763

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=99.91  E-value=1.6e-23  Score=209.87  Aligned_cols=323  Identities=15%  Similarity=0.103  Sum_probs=205.4

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.++.      ..+|++.+++.+.+.....        +++ ..+...+++++++++++ ++++++|++|||+
T Consensus        50 ~g~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--------~~~-~~~~~~~la~~l~~~~~-~~~~v~~~~ggse  119 (427)
T 3fq8_A           50 DGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTS--------FGA-PCALENVLAEMVNDAVP-SIEMVRFVNSGTE  119 (427)
T ss_dssp             TSCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC--------CSS-CCHHHHHHHHHHHHHST-TCSEEEEESSHHH
T ss_pred             CCCEEEECCCchhhhccCCCCHHHHHHHHHHHHhCCC--------cCC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence            445688887654      2489999999999865311        111 23577889999999998 6778999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-----H------hcC------cEEEEEeCCCCCCCCHHHHHHh
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-----Q------QEG------FEITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-----~------~~G------~~v~~v~~~~~~~~d~~~le~~  192 (457)
                      |++++++....+  ..+++||+..+.|.+....+..+     .      ..|      ..+..++.+     |+++|+++
T Consensus       120 a~~~al~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~  192 (427)
T 3fq8_A          120 ACMAVLRIMRAY--TGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKAL  192 (427)
T ss_dssp             HHHHHHHHHHHH--HCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHH
T ss_pred             HHHHHHHHHHHh--hCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHH
Confidence            999999765432  23466666555554322211100     0      001      124444443     89999999


Q ss_pred             cCC---CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc---CCC-cccCCCCcccEEEeccccccC
Q 040741          193 IRP---DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL---GKI-PVDVEKWNVSLMSLSGHKIYG  261 (457)
Q Consensus       193 i~~---~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~---g~~-~~~~~~~~~Di~~~s~~K~~g  261 (457)
                      +++   ++++|+++++++++|.+.|    +++|.++|++||+++|+|++|+.   |.. ..+.....+|++++  +|.+|
T Consensus       193 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t~--sK~~~  270 (427)
T 3fq8_A          193 FAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFGVTPDLTTL--GKIIG  270 (427)
T ss_dssp             HHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTTCCCSEEEE--CGGGG
T ss_pred             HHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcCCCCChhhh--hhhhh
Confidence            865   6889999999999999999    99999999999999999999982   111 11112224576654  59666


Q ss_pred             C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---C
Q 040741          262 P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---L  337 (457)
Q Consensus       262 ~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~  337 (457)
                      + -.+|+++++++.++.+.+.....   . ....+.++..+++..++++.+.+  +...++.+++.+++++.|.+.   +
T Consensus       271 ~G~~~G~~~~~~~~~~~~~~~~~~~---~-~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~  344 (427)
T 3fq8_A          271 GGLPVGAYGGKREIMQLVAPAGPMY---Q-AGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQET  344 (427)
T ss_dssp             TTSSCEEEEECHHHHTTBTTTSSBC---C-CCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcceEEEEEcHHHHHhhccCCCcc---c-cCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3 23899999887666655321000   0 01114467777777778876644  455666666666666666541   2


Q ss_pred             CCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741          338 DGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDM  401 (457)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~  401 (457)
                      +.....    ...+.++.+.+....              ...+...+  +||.+.++..                     
T Consensus       345 ~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~~~---------------------  399 (427)
T 3fq8_A          345 GHAACG----GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF---------------------  399 (427)
T ss_dssp             TCCCEE----EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT---------------------
T ss_pred             CCCeEE----EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHHCCcEEecCCC---------------------
Confidence            211111    112444445543211              12344444  6887765421                     


Q ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                        .  |+.++..++++|+++++++|++++++
T Consensus       400 --~--r~~~~~~~t~e~i~~~l~~l~~~l~~  426 (427)
T 3fq8_A          400 --E--AGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             --S--CEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             --C--CEEeeCcCCHHHHHHHHHHHHHHHHh
Confidence              2  55666778999999999999998864

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=99.91  E-value=3.6e-22  Score=200.17  Aligned_cols=324  Identities=15%  Similarity=0.119  Sum_probs=202.7

Q ss_pred             CCCcEEecCCCCCC------CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQATTP------VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~~~------~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+...      .+|++.+++.+.+.....+        ++ ..+...+++++++++++ .+++++|++|||
T Consensus        50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--------~~-~~~~~~~la~~l~~~~~-~~~~v~~~~sGs  119 (429)
T 4e77_A           50 VDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSF--------GA-PTEMEVKMAQLVTDLVP-TMDMVRMVNSGT  119 (429)
T ss_dssp             TTCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCC--------SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHH
T ss_pred             CCCCEEEECCCchhccccCCCCHHHHHHHHHHHHhCccc--------CC-CCHHHHHHHHHHHhhCC-CCCEEEEeCcHH
Confidence            34557899876542      5899999999998753211        11 12577889999999997 567899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcC-----------c------EEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEG-----------F------EITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G-----------~------~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++++++.+..+  .+++.|++....|.+...........|           .      .+..++.+     |+++|++
T Consensus       120 ea~~~al~~a~~~--~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~  192 (429)
T 4e77_A          120 EATMSAIRLARGY--TGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQ  192 (429)
T ss_dssp             HHHHHHHHHHHHH--HCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHH
Confidence            9999999965532  245666665555544443211110001           1      12222222     8999999


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh---cCCCc-ccCCCCcccEEEecccccc
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA---LGKIP-VDVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~---~g~~~-~~~~~~~~Di~~~s~~K~~  260 (457)
                      +++   +++++|++++++++.|.+.|    +++|.++|++||+++|+|++|+   .|... .+.....+|++  |++|.+
T Consensus       193 ~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~~~~pdi~--t~sK~~  270 (429)
T 4e77_A          193 AFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYHVIPDLT--CLGKII  270 (429)
T ss_dssp             HHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHTTCCCSEE--EEEGGG
T ss_pred             HHHhcCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhcCCCCCee--eecccc
Confidence            986   46788888888888888888    9999999999999999999998   22211 11112245776  555965


Q ss_pred             C-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741          261 G-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---  336 (457)
Q Consensus       261 g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---  336 (457)
                      | +.++|+++++++.++.+.+.....    .....+.++..++++.++++.+.+  +...++.+++.+++++.|.+.   
T Consensus       271 ~~G~~~G~~~~~~~~~~~l~~~~~~~----~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~  344 (429)
T 4e77_A          271 GGGMPVGAFGGRREVMNALAPTGPVY----QAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKE  344 (429)
T ss_dssp             GTTSCCEEEEECHHHHTTBTTTSSBC----C--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEECHHHHHHhccCCCcc----ccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHh
Confidence            5 235899999887666655321000    011125677777777788877643  455566666666666666541   


Q ss_pred             CCCeEEeCCCCCcccceEEEEEccccc---------------hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          337 LDGVVVNGSMERRYIGNLNLSFAYVEG---------------ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      ++.....    ...+.++.+.+...+.               ..+...+  +||.+.++..                   
T Consensus       345 ~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~-------------------  401 (429)
T 4e77_A          345 ENIPLVV----NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEEGVYLAPSAF-------------------  401 (429)
T ss_dssp             TTCCCEE----EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHTTEECCSSTT-------------------
T ss_pred             CCCceEE----EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHCCeEEeecCC-------------------
Confidence            2221111    1124555555543211               4455555  6888765421                   


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                          ..+|+  +..++++|+++++++|++++++
T Consensus       402 ----~~~~~--~~~~t~e~i~~~l~~l~~~l~~  428 (429)
T 4e77_A          402 ----EAGFM--SLAHSNEDIQKTVNAARRCFAK  428 (429)
T ss_dssp             ----SCEEC--CTTCCHHHHHHHHHHHHHHHTT
T ss_pred             ----CCEEE--eccCCHHHHHHHHHHHHHHHHh
Confidence                34454  5667999999999999998753

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.90  E-value=3.9e-24  Score=214.13  Aligned_cols=324  Identities=10%  Similarity=0.048  Sum_probs=217.7

Q ss_pred             CCCcEEecCCCCCC-CCHHHHHHHHHHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhC------CCCCcEEEeCC
Q 040741           55 AGRPLYLDMQATTP-VDPRVLDAMLPFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIG------ASPKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~~~-~~~~v~~a~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g------~~~~~i~~t~g  126 (457)
                      ....+.|+.+.+.. .++.+.+++.+.+... +. ....|.... + .....++++.++++++      ++++++++|+|
T Consensus        55 ~~~~i~l~~g~~~~~~~~~v~~a~~~~l~~~-~~-~~~~Y~~~~~G-~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G  131 (427)
T 2hox_A           55 QGCSADVASGDGLFLEEYWKQHKEASAVLVS-PW-HRMSYFFNPVS-NFISFELEKTIKELHEVVGNAAAKDRYIVFGVG  131 (427)
T ss_dssp             TTCCEECCSCCCGGGHHHHTTSHHHHCEEEC-TT-TTCSSSCSSCC-TTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESH
T ss_pred             CCceEEecCcCCCCCCCHHHHHhHHhhhhcC-Cc-ccccCCCCCCC-ccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCC
Confidence            44567777766653 3456677777665211 10 000010000 1 0125678888888875      67789999999


Q ss_pred             hHHHHHHHHHHh--------hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCce
Q 040741          127 ATESNNVSIKGV--------MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTG  198 (457)
Q Consensus       127 ~T~a~~~al~~~--------~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~  198 (457)
                      +++++.+++.++        .    ++|++|+++.+.|+.+...++..   |.+++...      +|+++|+++++++++
T Consensus       132 ~~~al~~~~~~l~~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~------~d~~~l~~~~~~~~k  198 (427)
T 2hox_A          132 VTQLIHGLVISLSPNMTATPD----APESKVVAHAPFYPVFREQTKYF---DKKGYVWA------GNAANYVNVSNPEQY  198 (427)
T ss_dssp             HHHHHHHHHHHHSCCTTTCTT----SCCEEEEECSSCCHHHHHHHHHS---CBTTEEEE------EEGGGGTTCSCGGGE
T ss_pred             HHHHHHHHHHHHhhccccccC----CCCCEEEEeCCCcccHHHHHHHc---CCeeeeec------CCHHHHHHhhcCCce
Confidence            999999999999        6    89999999999999988887765   87765432      578899999988899


Q ss_pred             EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCc-ccCCCCcccEEEeccccccCCCC--ceEEEEe-cCC
Q 040741          199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIP-VDVEKWNVSLMSLSGHKIYGPKG--VGALYMR-RRP  274 (457)
Q Consensus       199 li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~-~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~-~~~  274 (457)
                      +|++++++||+|.+.+ +    +++  ++..+.|+++.-.... ..+. .+.++++.|+||.+|.+|  +|+++++ ++.
T Consensus       199 ~v~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~~~~s~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l  270 (427)
T 2hox_A          199 IEMVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYWPHYTPIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESV  270 (427)
T ss_dssp             EEEEESSCTTTCCCCC-C----SST--TCEEEEECTTCSTTTSCCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHH
T ss_pred             EEEEcCCCCCcccccH-H----HHc--CCCEEEeecccCCCCCccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHH
Confidence            9999999999999999 4    233  5667888776422111 1222 467999999999888776  8999995 565


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHhhcCCCeEE-
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-----------KEMDYDHKRITALHDRLLNGIKEKLDGVVV-  342 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-----------~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-  342 (457)
                      ++++......       .....+.....++..+++...           ..+++.+++++++++++.+.|++ ++++.+ 
T Consensus       271 ~~~l~~~~~~-------~~~~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~g~~~~  342 (427)
T 2hox_A          271 YNNLLNYMTK-------NTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQ-SDRFSYQ  342 (427)
T ss_dssp             HHHHHHHHHH-------HTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTT-SSSEECC
T ss_pred             HHHHHHHHHh-------cCCCCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHh-CcCcccc
Confidence            5555543321       111344444444445555432           12456778888999999999998 778876 


Q ss_pred             -eC-CC--------CCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe
Q 040741          343 -NG-SM--------ERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG  409 (457)
Q Consensus       343 -~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~  409 (457)
                       .. +.        ....+.++.+.++. +..++...+   +||.+.+|..|..                  ..+++||+
T Consensus       343 ~~~~~~~~~~~~~~~p~~g~f~~~~~~~-~~~~~~~~ll~~~gI~v~pg~~f~~------------------~~~~~Ris  403 (427)
T 2hox_A          343 ELPQSEYCNYFRRMRPPSPSYAWVKCEW-EEDKDCYQTFQNGRINTQNGVGFEA------------------SSRYVRLS  403 (427)
T ss_dssp             CCCSCEEETTTTEEECCCCSEEEEEECS-GGGCSHHHHHHHTTEECEEGGGGTS------------------CTTEEEEE
T ss_pred             ccccccccccccccCCCCceEEEEECCC-cHHHHHHHHHHHCCEEEcCCCccCC------------------CCCEEEEE
Confidence             22 11        01113444555553 333444443   6999999876531                  13799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHH
Q 040741          410 IGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       410 ~~~~~t~edid~~~~~l~~~~~  431 (457)
                      ++.  ++++++.++++|+++++
T Consensus       404 ~~~--~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          404 LIK--TQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             CSS--CHHHHHHHHHHHHHHHT
T ss_pred             ecC--CHHHHHHHHHHHHHHHh
Confidence            985  78999999999998874

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.90  E-value=2.8e-23  Score=206.94  Aligned_cols=283  Identities=14%  Similarity=0.085  Sum_probs=190.6

Q ss_pred             HHHHHHHHHHHHh-CCC-----CCcEE--EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741          102 AVETARSQIADLI-GAS-----PKEII--FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus       102 ~~~~~~~~la~~~-g~~-----~~~i~--~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      ...++++.+++++ |.+     ++++.  .+.+|++|+.++...+. .+.++||+|+++.+.|.++...++..   |.++
T Consensus        80 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~-~~~~~gd~Vlv~~p~y~~~~~~~~~~---g~~~  155 (409)
T 4eu1_A           80 GIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLN-RFVANCNRIYGPDVGYPNHESIFAKA---GMEL  155 (409)
T ss_dssp             CCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGG-GTSSSCCEEEEESSCCTHHHHHHHHT---TCEE
T ss_pred             CcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHH-HhcCCCCEEEEeCCCcHhHHHHHHHc---CCeE
Confidence            3467888888876 665     56774  49999999988655332 22278999999999999998877766   9999


Q ss_pred             EEEeCC--CCCCCCHHHHHHhcC---CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----
Q 040741          174 TYLPVG--ADGIVNLDELRAAIR---PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----  241 (457)
Q Consensus       174 ~~v~~~--~~~~~d~~~le~~i~---~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----  241 (457)
                      +.++..  .++.+|+++++++++   +.++++++++++||||.+.+   +++|+++|++||+++|+|++|+.....    
T Consensus       156 ~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~  235 (409)
T 4eu1_A          156 TPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDY  235 (409)
T ss_dssp             EEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHH
T ss_pred             EEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCccc
Confidence            999873  557899999999985   45678888999999999998   555999999999999999998743221    


Q ss_pred             ----c-cC-CCCcccEEEeccccccCCCC--ceEE--EEec-C----CCccccccccCCccccccccCCCChhHHHHHHH
Q 040741          242 ----V-DV-EKWNVSLMSLSGHKIYGPKG--VGAL--YMRR-R----PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGS  306 (457)
Q Consensus       242 ----~-~~-~~~~~Di~~~s~~K~~g~~G--~G~l--~~~~-~----~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~  306 (457)
                          + .. ......+++.|++|.+|.+|  +|++  ++.+ +    ....+.....       ....+++.....++..
T Consensus       236 ~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~  308 (409)
T 4eu1_A          236 DAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRLVSQLALLIR-------PMYNNPPLYGAWVVSS  308 (409)
T ss_dssp             HTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHHHHHHHHHHH-------HHHSSCCHHHHHHHHH
T ss_pred             chHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHHHHHHHHHHh-------hhcCCCChHHHHHHHH
Confidence                1 01 11233478889999888666  7886  4443 3    2222222111       1112445555555555


Q ss_pred             HHHHH------HHhhHHHHHHHHHHHHHHHHHHhhcCCC---eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEe
Q 040741          307 ACEIA------KKEMDYDHKRITALHDRLLNGIKEKLDG---VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAV  375 (457)
Q Consensus       307 al~~~------~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~  375 (457)
                      +++..      .+.+++..++++++++++.+.|++ +..   +.+..+.    .+++  .+...+.+.....+  +||.+
T Consensus       309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~g~~~~~~~~~~~----~~~~--~~~~~~~~~~~~ll~~~gv~v  381 (409)
T 4eu1_A          309 ILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKA-CGSVHDWSHIERQ----VGMM--AYTGLTREQVELLRSEYHIYM  381 (409)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCSCCHHHHHS----CSSE--EECCCCHHHHHHHHHHHCEEC
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCcceecCC----ceEE--EEeCCCHHHHHHHHHcCCEEE
Confidence            55532      334678888999999999999988 421   3333221    2221  12223333333233  47777


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+|                           .||+++.. ++++|++++++|++++
T Consensus       382 ~p~---------------------------~Ri~~~~~-~~~~i~~~~~~l~~~l  408 (409)
T 4eu1_A          382 TLN---------------------------GRAAVSGL-NSTNVEYVSQAIHNVT  408 (409)
T ss_dssp             CTT---------------------------CEEEGGGC-CTTTHHHHHHHHHHHH
T ss_pred             cCC---------------------------CEEEEEec-CHhhHHHHHHHHHHHh
Confidence            542                           37888754 4677999999998875

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=99.90  E-value=3.8e-22  Score=200.30  Aligned_cols=321  Identities=14%  Similarity=0.059  Sum_probs=208.7

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++      +..+|++.+++.+.+...  ...      ++ ..+...++++.++++++ .+++++|++|||+
T Consensus        54 ~g~~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~~~------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~sgse  123 (434)
T 2epj_A           54 DGARIVDLVLAYGPLILGHKHPRVLEAVEEALARG--WLY------GA-PGEAEVLLAEKILGYVK-RGGMIRFVNSGTE  123 (434)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--SCC------SS-CCHHHHHHHHHHHHHHC-TTCEEEEESSHHH
T ss_pred             CCCEEEEcccchhcccCCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence            34467887654      236899999999998752  111      11 12567789999999995 4567999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-H-------H---HhcCc------EEEEEeCCCCCCCCHHHHHHh
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-H-------L---QQEGF------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~-------~---~~~G~------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      |+.++++....+  .+++.||+..+.|.+....+. .       .   ...|+      ++..++.+     |+++|+++
T Consensus       124 A~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~  196 (434)
T 2epj_A          124 ATMTAIRLARGY--TGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERV  196 (434)
T ss_dssp             HHHHHHHHHHHH--HCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHH
T ss_pred             HHHHHHHHHHHh--hCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHH
Confidence            999999974321  234566665555544322111 0       0   01132      35555543     89999999


Q ss_pred             cC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---ccC--CCCcccEEEecccccc
Q 040741          193 IR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---VDV--EKWNVSLMSLSGHKIY  260 (457)
Q Consensus       193 i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~--~~~~~Di~~~s~~K~~  260 (457)
                      ++   +++++|+++++++++|.+.|    +++|.++|++||+++|+|++|+ |...   ...  ....+|++  |++|.+
T Consensus       197 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l  273 (434)
T 2epj_A          197 FAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFRLGLEGAQGYFNIEGDII--VLGKII  273 (434)
T ss_dssp             HHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTTSSTTHHHHHHTCCCSEE--EEEGGG
T ss_pred             HHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-ceeCCcchhhHHhCCCCCee--eecchh
Confidence            87   37889999888888999988    9999999999999999999998 2211   111  11246776  556966


Q ss_pred             CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcC--
Q 040741          261 GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL--  337 (457)
Q Consensus       261 g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--  337 (457)
                      |+ -.+|+++++++..+.+.+...  .. . ....+.++..++++.++++.+.+  +...++.+++.+++++.|++ +  
T Consensus       274 ~~G~~~G~v~~~~~~~~~l~~~~~--~~-~-~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~-~~~  346 (434)
T 2epj_A          274 GGGFPVGAVAGSREVMSLLTPQGK--VF-N-AGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASE-VLD  346 (434)
T ss_dssp             GTTSSCEEEEECHHHHTTBTTTSS--BC-C-CCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHH-HHH
T ss_pred             cCCcceeeeeecHHHHHhhccCCC--cc-c-CCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHH-HHh
Confidence            54 238999998876555543110  00 0 01124566677777778887655  55677778888888887766 3  


Q ss_pred             --CCe-EEeCCCCCcccceEEEEEccc--------------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          338 --DGV-VVNGSMERRYIGNLNLSFAYV--------------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       338 --~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                        +.. .+.+     .+.++.+.+...              ....+...|  +||.+.++..                  
T Consensus       347 ~~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~------------------  403 (434)
T 2epj_A          347 RTGLPYTINR-----VESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEMLRRGVFIAPSNL------------------  403 (434)
T ss_dssp             HHTCCEEEEE-----ETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHHHTTEECCSSTT------------------
T ss_pred             hCCCcEEEEE-----eeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHHHCCeEEeccCC------------------
Confidence              221 1222     245556666431              123455554  6888776521                  


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                           ..+|+  +..++++|+++++++|+++++++
T Consensus       404 -----~~~~~--~~~~t~e~i~~~l~~l~~~l~~~  431 (434)
T 2epj_A          404 -----EAVFT--GLPHQGEALEIAVEGLRSSLKTV  431 (434)
T ss_dssp             -----SCEEC--CTTCSHHHHHHHHHHHHHHHHHH
T ss_pred             -----CcEEE--eccCCHHHHHHHHHHHHHHHHHH
Confidence                 23554  45679999999999999998875

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=99.90  E-value=9.3e-22  Score=198.59  Aligned_cols=329  Identities=14%  Similarity=0.064  Sum_probs=202.5

Q ss_pred             CCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+..|+|+.++.      ..++++.+++.+.+...  ...      ++ ..+...++.++++++++ ++++++|++||++
T Consensus        55 ~g~~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~--~~~------~~-~~~~~~~la~~l~~~~~-~~~~v~~~~gg~e  124 (453)
T 2cy8_A           55 DGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSHG--VQY------AA-SHPLEVRWAERIVAAFP-SIRKLRFTGSGTE  124 (453)
T ss_dssp             TCCEEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT--CSS------CS-SCHHHHHHHHHHHHHCT-TCSEEEEESCHHH
T ss_pred             CCCEEEECcccHhhcccCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHhhCC-CCCEEEEeCCHHH
Confidence            344678885552      36899999999998652  111      11 22567778888888886 6678999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-H-------HhcCc------EEEEEeCCCCCCCCHHHHHHhcC-
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-L-------QQEGF------EITYLPVGADGIVNLDELRAAIR-  194 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~-------~~~G~------~v~~v~~~~~~~~d~~~le~~i~-  194 (457)
                      |+.++++....+. ++ +.||+.++.|.+....+.. .       ...|.      .+..++.     .|+++|+++++ 
T Consensus       125 A~~~al~~ar~~~-~~-~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~  197 (453)
T 2cy8_A          125 TTLLALRVARAFT-GR-RMILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFAN  197 (453)
T ss_dssp             HHHHHHHHHHHHH-CC-CEEEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh-CC-CEEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHh
Confidence            9999999832211 44 5666666666544332211 1       00133      2333432     38999999987 


Q ss_pred             --CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---ccC--CCCcccEEEeccccccCC-
Q 040741          195 --PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---VDV--EKWNVSLMSLSGHKIYGP-  262 (457)
Q Consensus       195 --~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~~~--~~~~~Di~~~s~~K~~g~-  262 (457)
                        +++++|+++++++++|.+.|    +++|.++|++||+++|+|++|+ |...   ...  ....+|++  |++|.+|+ 
T Consensus       198 ~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l~~G  274 (453)
T 2cy8_A          198 HGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVIS-GFRVGNHGMQALLDVQPDLT--CLAKASAGG  274 (453)
T ss_dssp             HGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTCTTHHHHHHTCCCSEE--EEEGGGGTT
T ss_pred             cCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccccCchhhhHHhCCCCcEE--EEChhhhCC
Confidence              47788888888888999888    9999999999999999999998 3211   111  12246776  56696553 


Q ss_pred             CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHhhc---CC
Q 040741          263 KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITALHDRLLNGIKEK---LD  338 (457)
Q Consensus       263 ~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~~~~~l~~~l~~~---~~  338 (457)
                      .++|+++++++..+.+.+...+... . ....+.++..++++.++++. + .  +...++.+++.+++++.|++.   ++
T Consensus       275 ~~~G~v~~~~~~~~~l~~~~~~~~~-~-~~t~~~n~~~~aa~~aal~~~~-~--~~~~~~~~~~~~~l~~~L~~~~~~~~  349 (453)
T 2cy8_A          275 LPGGILGGREDVMGVLSRGSDRKVL-H-QGTFTGNPITAAAAIAAIDTIL-E--DDVCAKINDLGQFAREAMNHLFARKG  349 (453)
T ss_dssp             SSCEEEEECHHHHTTSSSCC-----------CCCCHHHHHHHHHHHHHHH-H--TTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cceEEEechHHHHHHhccccCCCce-e-CCCCCCCHHHHHHHHHHHHHHh-h--hhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            3489999998766655441001000 0 01124566677777778876 5 3  456677777777877777651   23


Q ss_pred             CeEEeCCCCCcccceEEEEEcc-----c------------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcC
Q 040741          339 GVVVNGSMERRYIGNLNLSFAY-----V------------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALG  396 (457)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~-----~------------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g  396 (457)
                      ......    ..+.++.+.+..     .            +   ..++...+  +||.+.++                  
T Consensus       350 ~~~~~~----~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gv~v~~~------------------  407 (453)
T 2cy8_A          350 LNWLAY----GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMIAAMRMALILEGVDIGGR------------------  407 (453)
T ss_dssp             CCEEEE----CCTTEEEEEETSCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHHTTEECBTT------------------
T ss_pred             CcEEEE----EeeeEEEEEEeccccccccccccccccccccHHHHHHHHHHHHHCCeEEeCC------------------
Confidence            222111    114455566652     1            1   23444444  57766321                  


Q ss_pred             CCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhH
Q 040741          397 VDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLY  440 (457)
Q Consensus       397 ~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~  440 (457)
                             +.+|+  +..++++|+++++++|++++++++....+|
T Consensus       408 -------~~~~l--~~~~t~~~i~~~l~~l~~~l~~~~~~~~~~  442 (453)
T 2cy8_A          408 -------GSVFL--SAQHEREHVEHLVTTFDRVLDRLADENLLS  442 (453)
T ss_dssp             -------TEEEC--CTTCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -------CCEEe--eccCCHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence                   23554  467899999999999999999887654443

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=99.90  E-value=6.7e-23  Score=205.53  Aligned_cols=324  Identities=11%  Similarity=0.054  Sum_probs=206.2

Q ss_pred             CCCcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.++.      ..+|++.+++.+.+.....+        ++ ..+...++++.++++++ ++++++|++|||
T Consensus        50 ~~g~~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~--------~~-~~~~~~~l~~~la~~~~-~~~~v~~~~~Gs  119 (429)
T 3k28_A           50 IDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERGTSF--------GA-PTEIENKLAKLVIERVP-SIEIVRMVNSGT  119 (429)
T ss_dssp             TTCCEEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSCC--------SS-CCHHHHHHHHHHHHHST-TCSEEEEESSHH
T ss_pred             CCCCEEEECCCChhhcccCCCCHHHHHHHHHHHhhCcCc--------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCChH
Confidence            3455799987754      25899999999998763211        11 12567788999999987 567899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCc-chHHHHHHHH----------hcC------cEEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHK-CVLDSCRHLQ----------QEG------FEITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~-~~~~~~~~~~----------~~G------~~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++.+++.+..+  .++++|++..+.|. ....+.....          ..+      .++..++.+     |++++++
T Consensus       120 ea~~~ai~~a~~~--~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~  192 (429)
T 3k28_A          120 EATMSALRLARGY--TGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKY  192 (429)
T ss_dssp             HHHHHHHHHHHHH--HTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHH
T ss_pred             HHHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHH
Confidence            9999999987632  25667777555544 3322211100          000      123333333     8999999


Q ss_pred             hcC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCC--c--ccCCCCcccEEEecccccc
Q 040741          192 AIR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKI--P--VDVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       192 ~i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~--~--~~~~~~~~Di~~~s~~K~~  260 (457)
                      +++   +++++|+++.+++++|.+.|    +++|.++|++||+++|+|++|.....  .  .+.....+|+++  ++|.+
T Consensus       193 ~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~~~~di~t--~sK~~  270 (429)
T 3k28_A          193 AFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNCGQGYYGVTPDLTC--LGKVI  270 (429)
T ss_dssp             HHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTSSTTHHHHHHTCCCSEEE--ECGGG
T ss_pred             HHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchHHHHhCCCCceeh--hhhhh
Confidence            886   46788999999888999988    99999999999999999999962110  0  111122357665  55955


Q ss_pred             C-CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741          261 G-PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---  336 (457)
Q Consensus       261 g-~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---  336 (457)
                      | +.++|+++++++.++.+.+.....   . ....+.++..+++..++++...   ++..++++++.+++++.|.+.   
T Consensus       271 ~~G~~iG~~~~~~~~~~~~~~~~~~~---~-~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~  343 (429)
T 3k28_A          271 GGGLPVGAYGGKAEIMRQVAPSGPIY---Q-AGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEK  343 (429)
T ss_dssp             GTTSCCEEEEECHHHHTTBTTTSSBC---C-CCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEEcHHHHhhhccCCCcc---c-cCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4 335899999887666554321000   0 0112456666666666766543   566677777777777776651   


Q ss_pred             CCCeEEeCCCCCcccceEEEEEcccc--------------chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          337 LDGVVVNGSMERRYIGNLNLSFAYVE--------------GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      ++.+....    ..+.++.+.+....              ...+...+  +||.+.++.                     
T Consensus       344 ~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~---------------------  398 (429)
T 3k28_A          344 HGIPHHIN----RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVEQGVFLPPSQ---------------------  398 (429)
T ss_dssp             TTCCCEEE----EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST---------------------
T ss_pred             CCCCEEEE----eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHHCCeEEecCC---------------------
Confidence            23221111    12444444442211              13344444  688776542                     


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        .+.+|++  ..++++|+++++++|+++++++
T Consensus       399 --~~~~r~~--~~~t~e~i~~~l~~l~~~l~~~  427 (429)
T 3k28_A          399 --FEGLFLS--TVHSDADIEATIAAAEIAMSKL  427 (429)
T ss_dssp             --TSCBCCC--TTCCHHHHHHHHHHHHHHHHTC
T ss_pred             --CCCEEEE--CCCCHHHHHHHHHHHHHHHHHH
Confidence              1567775  4678999999999999998754

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=99.89  E-value=1e-21  Score=199.11  Aligned_cols=332  Identities=14%  Similarity=0.111  Sum_probs=207.3

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhc-cCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSR-YGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+... ..+..    .++. ...+..+++.+.++++++...++++|++|
T Consensus        60 ~dG~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~----~~~~~~~~~l~~~la~~l~~~~~~~~~~v~f~~s  135 (472)
T 1ohv_A           60 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRP----ALGILPPENFVEKLRESLLSVAPKGMSQLITMAC  135 (472)
T ss_dssp             TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCC----CTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred             CCCCEEEECCCCHhhcccCCCCHHHHHHHHHHHhhccccccc----ccccccHHHHHHHHHHHHHHhCCCCcCEEEEeCC
Confidence            345568888553      346899999999976432 11111    1111 11234445555566666555678999999


Q ss_pred             hHHHHHHHHHHhhhhhc----C-----------------CC---CEEEEcCCC-CcchHHHHHHHH-----hcCcEE---
Q 040741          127 ATESNNVSIKGVMHFYK----D-----------------KK---RHVITTQTE-HKCVLDSCRHLQ-----QEGFEI---  173 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~----~-----------------~g---~~vi~~~~~-h~~~~~~~~~~~-----~~G~~v---  173 (457)
                      ||+|++.+++.+..++.    .                 +|   +.||+.+.. |.....+.....     ..|..+   
T Consensus       136 GseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~  215 (472)
T 1ohv_A          136 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW  215 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCC
T ss_pred             chhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCC
Confidence            99999999998764421    1                 23   777776655 444444433321     112211   


Q ss_pred             EEEeCCCC-C-------------CCCHHHHHHhcCC------CceEEEEeccccccccccC----hHHHHHHHHhcCCcE
Q 040741          174 TYLPVGAD-G-------------IVNLDELRAAIRP------DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPF  229 (457)
Q Consensus       174 ~~v~~~~~-~-------------~~d~~~le~~i~~------~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~l  229 (457)
                      ..++.+.. .             ..|+++|+++|++      ++++|++++++|++|.+.|    +++|.++|++||+++
T Consensus       216 ~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~ll  295 (472)
T 1ohv_A          216 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF  295 (472)
T ss_dssp             CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEE
Confidence            12232210 0             1268899999976      7899999999999999887    999999999999999


Q ss_pred             EEehhhh-cCCCc--ccCCCCc----ccEEEeccccc-cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHH
Q 040741          230 HTDAAQA-LGKIP--VDVEKWN----VSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLI  301 (457)
Q Consensus       230 i~D~a~~-~g~~~--~~~~~~~----~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  301 (457)
                      |+|++|+ +|...  +....++    +|++++  +|. +|  | |+++ +++. ....+...+       .....++..+
T Consensus       296 i~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~--sK~~l~--G-G~~~-~~~~-~~~~~~~~~-------~T~~~~~~~~  361 (472)
T 1ohv_A          296 LVDEVQTGGGSTGKFWAHEHWGLDDPADVMTF--SKKMMT--G-GFFH-KEEF-RPNAPYRIF-------NTWLGDPSKN  361 (472)
T ss_dssp             EEECTTTTTTTTSSSSGGGGGCCSSCCSEEEE--CGGGSS--E-EEEE-CGGG-SCSSSSSSC-------CSSSSCHHHH
T ss_pred             EEeCcccCCCCCCCchhccccCCCCCCCEEEE--cccccc--C-CccC-chhh-ccccccccc-------CccCccHHHH
Confidence            9999998 44332  2333333    787755  497 44  3 6665 4432 212221111       1113467777


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC-eEEeCCCCCcccceEEEEEccc-cchHHHhcc--cCeE
Q 040741          302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG-VVVNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVA  374 (457)
Q Consensus       302 ~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~  374 (457)
                      +++.++++.+.+  +.+.++.+++.+++++.|.+.   +++ +....    ..+.++.+.+... ....+...|  +||.
T Consensus       362 aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~----~~g~~~~~~~~~~~~~~~~~~~l~~~Gv~  435 (472)
T 1ohv_A          362 LLLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVR----GRGTFCSFDTPDESIRNKLISIARNKGVM  435 (472)
T ss_dssp             HHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEE----EETTEEEEECSSHHHHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeec----CCceEEEEEeCChhHHHHHHHHHHHCCeE
Confidence            777788887765  456777888888888877651   242 32111    1134444444321 133455555  5877


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      +.++.                       .+.|||+++..+|++||++++++|+++++++
T Consensus       436 ~~~~g-----------------------~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~~  471 (472)
T 1ohv_A          436 LGGCG-----------------------DKSIRFRPTLVFRDHHAHLFLNIFSDILADF  471 (472)
T ss_dssp             CEEET-----------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHTC
T ss_pred             EecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            76531                       2799999999999999999999999988653

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.89  E-value=2.2e-22  Score=207.05  Aligned_cols=343  Identities=13%  Similarity=0.012  Sum_probs=210.1

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHH-HHHHHHHHhC--C---CCCcEEEeCChHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVET-ARSQIADLIG--A---SPKEIIFTSGATESNN  132 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g--~---~~~~i~~t~g~T~a~~  132 (457)
                      +.|..+.+...++.+.+++.+.... .++|..    .|..  +..+. ++..+.+..+  .   +++++++|+|+++++.
T Consensus       107 i~l~~g~~~~~~~~~~~al~~~~~~-~~Y~~~----~g~~--~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~  179 (546)
T 2zy4_A          107 LSYVRDQLGLDPAAFLHEMVDGILG-CNYPVP----PRML--NISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMA  179 (546)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHT-CSCCSS----SSCC--HHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHH
T ss_pred             hecccCCCCCCChHHHHHHHHhhhc-CCCCCC----cCCH--HHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHH
Confidence            3443444455557777777776532 222221    0111  22333 2223333332  2   3568999999999999


Q ss_pred             HHHHHhh-hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          133 VSIKGVM-HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       133 ~al~~~~-~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +++.++. ..+.++||.|+++.+.|+.+...+.. ...|.+++.++.+.+  +.+|++++++++++++++|++++++|||
T Consensus       180 ~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~p~NPt  258 (546)
T 2zy4_A          180 YIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPEL-AQYALEEVAINADPSLNWQYPDSELDKLKDPAIKIFFCVNPSNPP  258 (546)
T ss_dssp             HHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHS-TTSCCEEEEEECBGGGTTBCCHHHHGGGGSTTEEEEEEESSCSSS
T ss_pred             HHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHH-cCCCcEEEEEecCcccCCCCCHHHHHHhhCCCCeEEEEECCCCCC
Confidence            9998741 00117899999999999998876543 234788999988643  4689999999998899999999999999


Q ss_pred             ccccC---hHHHHHHH--HhcCCcEEEehhhhcCCC-cccCC--CCcccEEEeccccccCCCC--ceEEEEecC-CCccc
Q 040741          210 GVIQP---MEEIGQIC--KEFKIPFHTDAAQALGKI-PVDVE--KWNVSLMSLSGHKIYGPKG--VGALYMRRR-PRIRV  278 (457)
Q Consensus       210 G~~~~---l~~i~~l~--~~~~v~li~D~a~~~g~~-~~~~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~-~~~~~  278 (457)
                      |.+.+   +++|.++|  +++|++||+|++|+.... ...+.  ..+.++++.|++|.+|.+|  +|+++++++ .++++
T Consensus       259 G~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l~~~l  338 (546)
T 2zy4_A          259 SVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGWRLGVVAAHQQNVFDLA  338 (546)
T ss_dssp             CBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGGCEEEEEEESSCHHHHH
T ss_pred             CccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCcceEEEEECCHHHHHHH
Confidence            99988   56688888  789999999999984332 11111  1246789999999888666  899999875 44433


Q ss_pred             ccc------------ccCCc-----------------cccccccCCCChhHHHHHH--HHHHHHH---HhhHHHHHHHHH
Q 040741          279 EPL------------INGGG-----------------QERGIRSGTLPTPLIVGFG--SACEIAK---KEMDYDHKRITA  324 (457)
Q Consensus       279 ~~~------------~~~~~-----------------~~~~~~~~t~~~~~~~al~--~al~~~~---~~~~~~~~~~~~  324 (457)
                      ...            ...+.                 ..........+.+...++.  ++..++.   ...++..+.+++
T Consensus       339 ~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~  418 (546)
T 2zy4_A          339 LDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRR  418 (546)
T ss_dssp             HHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            110            00000                 0000111233433333321  1112221   224566666666


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-----------------ccchH-HHhcc--cCeEecccCccCCC
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-----------------VEGES-LLMGL--KEVAVSSGSACTSA  384 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-~~~~l--~~i~~~~g~~~~~~  384 (457)
                      +.+.+.+.|..   ++.+.. +  ....++.+.++.                 .+..+ +...+  +||.+.+|..+.. 
T Consensus       419 r~~~l~~~L~~---~~~~~~-~--~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~-  491 (546)
T 2zy4_A          419 RETTLYRELGM---PPLRDE-N--AVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGS-  491 (546)
T ss_dssp             HHHHHHGGGTS---SCCCCT-T--BCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTC-
T ss_pred             HHHHHHHhcCC---CcccCC-C--CeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCC-
Confidence            77766666632   122111 1  112333444431                 11222 23333  6999999976532 


Q ss_pred             CCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          385 SLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       385 ~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                                       ..+++||+++. .+++++++++++|+++++++.
T Consensus       492 -----------------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~~  523 (546)
T 2zy4_A          492 -----------------NRPSGRASLAN-LNEYEYAAIGRALRKMADELY  523 (546)
T ss_dssp             -----------------SSCEEEEESSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCeEEEEecc-CCHHHHHHHHHHHHHHHHHHH
Confidence                             12789999984 568999999999999988765

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.89  E-value=4.9e-22  Score=198.37  Aligned_cols=271  Identities=14%  Similarity=0.075  Sum_probs=184.3

Q ss_pred             HHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcE-EEeCChHHHHHHHHHHhhhhhcCCCCE
Q 040741           71 PRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEI-IFTSGATESNNVSIKGVMHFYKDKKRH  148 (457)
Q Consensus        71 ~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i-~~t~g~T~a~~~al~~~~~~~~~~g~~  148 (457)
                      +++++++.+...... .++. ..+.|+.   ...+++++.+++++|.+...+ ++.+|||+|+..++.+++    ++||+
T Consensus        38 ~~vl~A~~~~~~~~~~~~~~-~g~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al~----~~Gd~  109 (431)
T 3ht4_A           38 FRVLESFGKHKISDSHFIPT-TGYGYDD---IGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGIL----RPGDE  109 (431)
T ss_dssp             HHHHHHHHHTTCCGGGSCCC-CTTCCSC---HHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTTC----CTTCE
T ss_pred             HHHHHHHHHhchhhhhcCCC-CCCCCCh---hhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHhC----CCCCE
Confidence            467777776532211 1221 1222222   347889999999999875321 114478999999999988    89999


Q ss_pred             EEEcC-CCCcchHHHHH-------HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEec-cccc---cccccChH
Q 040741          149 VITTQ-TEHKCVLDSCR-------HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMA-VNNE---IGVIQPME  216 (457)
Q Consensus       149 vi~~~-~~h~~~~~~~~-------~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~-~~~~---~G~~~~l~  216 (457)
                      |++.. +.|.++...+.       .++..|++++.++.+.++.+|++++++++++++++|++++ ++||   +|...+++
T Consensus       110 Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~~~tk~V~i~~sp~np~~~~~~~~~l~  189 (431)
T 3ht4_A          110 LLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIHSNTKMIGIQRSKGYATRPSFTISQIK  189 (431)
T ss_dssp             EEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCCTTEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred             EEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcCCCCeEEEEECCCCCCCCCcCCHHHHH
Confidence            99998 89998887663       3345699999999988899999999999999999999996 5555   55666799


Q ss_pred             HHHHHHHh--cCCcEEEehhhhcCCCcccCCCCcccEEEecccccc-C---CCCceEEEEecCCCccccccccCCccccc
Q 040741          217 EIGQICKE--FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIY-G---PKGVGALYMRRRPRIRVEPLINGGGQERG  290 (457)
Q Consensus       217 ~i~~l~~~--~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~-g---~~G~G~l~~~~~~~~~~~~~~~~~~~~~~  290 (457)
                      +|+++|++  +|+++++|++++.+.........++|++++|++|.+ |   +.| |++++++++++++.......+..  
T Consensus       190 ~i~~la~~~~~~~~livDea~~~~~~~~~~~~~g~Di~~~S~sK~lgg~~~~~G-G~v~~~~~li~~l~~~~~~~~~g--  266 (431)
T 3ht4_A          190 EMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHVGADLMAGSLIKNPGGGIVKTG-GYIVGKEQYVEACAYRLTSPGIG--  266 (431)
T ss_dssp             HHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGTTCSEEEEETTSGGGTTTCSSC-EEEEECHHHHHHHHHHHSCTTTT--
T ss_pred             HHHHHHHhhCCCCEEEEeCCChhhccCCCccccCCeEEEcCccccCCCCCCCce-EEEEecHHHHHHHHHHhccCCcc--
Confidence            99999999  999999999999876544444557899999999953 2   566 99999887766665433211110  


Q ss_pred             cccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC-cccceEEEEEc
Q 040741          291 IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER-RYIGNLNLSFA  359 (457)
Q Consensus       291 ~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~  359 (457)
                      ...+ ++......+...++    .++.+.++..++++++.+.|++ + ++.+...+.. +...++.+.+.
T Consensus       267 ~~~~-~~~~~~~~~~~~l~----~~~~~~~~~~~~a~~l~~~L~~-~-g~~v~p~~~~~~~~li~~i~l~  329 (431)
T 3ht4_A          267 AEAG-ASLYSLQEMYQGFF----LAPHVAGQALKGAIFTAAFLEK-L-GMNTSPAWNAPRTDLIQSVQFD  329 (431)
T ss_dssp             TSCS-CCCSCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH-H-TCCEESCTTSCCSSSCCEEECC
T ss_pred             cccC-ccHHHHHHHHhHhh----hHHHHHHHHHHHHHHHHHHHHh-C-cCEecCCCCCCCccEEEEEEeC
Confidence            0111 11111111222222    2356677888899999999988 4 4455433322 23334555554

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.88  E-value=2.7e-21  Score=201.95  Aligned_cols=322  Identities=11%  Similarity=0.025  Sum_probs=213.5

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA  180 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~  180 (457)
                      ..+.++++.+|+++|++. .+++++|+|.|+.+++.+++    ++||+||+++..|.++..++...   |+++++++.+.
T Consensus       195 g~i~eaE~~lA~~fGa~~-a~~v~nGts~An~~ai~al~----~pGD~VLv~r~~H~S~~~~l~ls---Ga~pv~v~~~~  266 (715)
T 3n75_A          195 GPHKEAEQYIARVFNADR-SYMVTNGTSTANKIVGMYSA----PAGSTILIDRNCHKSLTHLMMMS---DVTPIYFRPTR  266 (715)
T ss_dssp             THHHHHHHHHHHHHTCSE-EEEESSHHHHHHHHHHHHHC----CTTCEEEEESSCCHHHHHHHHHS---CCEEEEECCCB
T ss_pred             HHHHHHHHHHHHHhCCCC-ceEECcHHHHHHHHHHHHhC----CCCCEEEECCCccHHHHHHHHHc---CCEEEEEeccc
Confidence            357789999999999864 24555555799999999998    89999999999999999987665   99999998753


Q ss_pred             C-----CCC-----CHHHHHHhcCC--Cce---EEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC--cc-
Q 040741          181 D-----GIV-----NLDELRAAIRP--DTG---LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI--PV-  242 (457)
Q Consensus       181 ~-----~~~-----d~~~le~~i~~--~t~---li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~--~~-  242 (457)
                      +     +.+     |+++|++++++  +++   +++++++ |++|.+.|+++|.++|++++  +++|+||+.+..  +. 
T Consensus       267 ~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~  343 (715)
T 3n75_A          267 NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIY  343 (715)
T ss_dssp             CTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGG
T ss_pred             cccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcc
Confidence            2     124     89999999973  334   7888888 89999999999999998764  799999985531  11 


Q ss_pred             -cCC--CC--cccEE---Eecccc-ccCCCCceEEEEecCCCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHH
Q 040741          243 -DVE--KW--NVSLM---SLSGHK-IYGPKGVGALYMRRRPRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK  312 (457)
Q Consensus       243 -~~~--~~--~~Di~---~~s~~K-~~g~~G~G~l~~~~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~  312 (457)
                       +..  ..  ++|++   +.|+|| +.|+.+.|++.++++... ++.....      .+.+++++...++++.+|++.+.
T Consensus       344 ~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~------~~~STSpsy~~~AsldaA~~~~~  417 (715)
T 3n75_A          344 EGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYM------MHTTTSPHYGIVASTETAAAMMK  417 (715)
T ss_dssp             TTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHH------HTSCSSCCHHHHHHHHHHHHHHS
T ss_pred             ccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHH------hhcCCCchHHHHHHHHHHHHHHH
Confidence             111  11  25765   899999 555666799998875211 1111111      13456889999999999998876


Q ss_pred             H-hhHHHHHHHHHHHHHHHHHHhhcCCC------eEEeCCCCCcccceEEEE-------EccccchH-HHhcccCeEec-
Q 040741          313 K-EMDYDHKRITALHDRLLNGIKEKLDG------VVVNGSMERRYIGNLNLS-------FAYVEGES-LLMGLKEVAVS-  376 (457)
Q Consensus       313 ~-~~~~~~~~~~~~~~~l~~~l~~~~~~------~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~l~~i~~~-  376 (457)
                      . +-.++.++..++++++++.|.+ +++      +.+.++..-.......+.       |....... ..+-+ .+.+. 
T Consensus       418 ~~~g~~~~~~l~~~a~~~r~~L~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~-Kl~i~~  495 (715)
T 3n75_A          418 GNAGKRLINGSIERAIKFRKEIKR-LRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI-KVTLLT  495 (715)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT-EEEEEC
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHH-hhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe-EEEEEc
Confidence            4 4567889999999999999987 553      566654311001000000       00000000 01111 11111 


Q ss_pred             ccCccC-----CCC--CChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHH
Q 040741          377 SGSACT-----SAS--LEPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE  441 (457)
Q Consensus       377 ~g~~~~-----~~~--~~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~  441 (457)
                      +|...+     .+.  .+-.-.|+..|+..+. +...|-+-++...+++++++++++|.++-+......|+++
T Consensus       496 ~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~~~~~~~~~~  568 (715)
T 3n75_A          496 PGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKRAFDLNLRVKN  568 (715)
T ss_dssp             SCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTTCBHHH
T ss_pred             CCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhhcccchhh
Confidence            111000     000  0111235566776655 4567777788888999999999999988877766666553

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=99.87  E-value=6.5e-21  Score=190.74  Aligned_cols=318  Identities=15%  Similarity=0.115  Sum_probs=201.9

Q ss_pred             CCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHH
Q 040741           56 GRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATE  129 (457)
Q Consensus        56 ~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~  129 (457)
                      .+.-|+|+.++      +..+|++.+++.+.+...  ...      ++ ..+...++++.++++++ ++++++|++||++
T Consensus        50 ~g~~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~~~------~~-~~~~~~~l~~~l~~~~~-~~~~v~~~~~g~e  119 (424)
T 2e7u_A           50 DGNRYLDYVMSWGPLILGHAHPKVLARVRETLERG--LTF------GA-PSPLEVALAKKVKRAYP-FVDLVRFVNSGTE  119 (424)
T ss_dssp             TCCEEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--SCC------SS-CCHHHHHHHHHHHHHCT-TCCEEEEESSHHH
T ss_pred             CCCEEEEccccccccccCCCCHHHHHHHHHHHHhC--CCC------CC-CCHHHHHHHHHHHHhCC-CCCEEEEeCCHHH
Confidence            34457787653      246899999999998752  111      11 12567889999999986 5678999999999


Q ss_pred             HHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-H----------HhcCc------EEEEEeCCCCCCCCHHHHHHh
Q 040741          130 SNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-L----------QQEGF------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       130 a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~----------~~~G~------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      |+.++++....+  .+++.||+..+.|.+....+.. .          ...|.      ++..++.     .|+++|+++
T Consensus       120 a~~~al~~ar~~--~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-----~d~~~le~~  192 (424)
T 2e7u_A          120 ATMSALRLARGY--TGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-----NDPEGLREV  192 (424)
T ss_dssp             HHHHHHHHHHHH--HCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-----TCHHHHHHH
T ss_pred             HHHHHHHHHHHh--hCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-----CCHHHHHHH
Confidence            999999863221  2346666666655543322110 0          00132      3444443     289999999


Q ss_pred             cC---CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc---c--cCCCCcccEEEecccccc
Q 040741          193 IR---PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP---V--DVEKWNVSLMSLSGHKIY  260 (457)
Q Consensus       193 i~---~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~---~--~~~~~~~Di~~~s~~K~~  260 (457)
                      ++   +++++|+++++++++|.+.|    +++|.++ ++||+++|+|++|+ |...   .  +.....+|++  |++|.+
T Consensus       193 l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~~g~~~~~~~~~~~~di~--s~sK~l  268 (424)
T 2e7u_A          193 LKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFRLAFGGATELLGLKPDLV--TLGKIL  268 (424)
T ss_dssp             HHHHGGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTTSSTTHHHHHHTCCCSEE--EECGGG
T ss_pred             HHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccccchhHHHHHhCCCcchh--hhhhhh
Confidence            86   46778888877777999888    9999999 99999999999998 2211   1  1111236766  667966


Q ss_pred             CC-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---
Q 040741          261 GP-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---  336 (457)
Q Consensus       261 g~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---  336 (457)
                      |+ -.+|+++++++..+.+.+....  . . ....+.++..++++.++++.+.+ .+...++.+++.+++++.|++.   
T Consensus       269 ~~G~~~G~~~~~~~~~~~~~~~~~~--~-~-~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~  343 (424)
T 2e7u_A          269 GGGLPAAAYAGRREIMEKVAPLGPV--Y-Q-AGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKEVLKE  343 (424)
T ss_dssp             GTTSSCEEEEECHHHHTTBTTTSSB--C-C-CCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCcceEEEEEcHHHHhhhcccCCc--c-c-CCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54 2489999998766655441100  0 0 01124566667777778877654 3667778888888888887661   


Q ss_pred             CCCe-EEeCCCCCcccceEEEEEccc--------------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          337 LDGV-VVNGSMERRYIGNLNLSFAYV--------------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       337 ~~~~-~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      ++.. .+.+     .+.++.+.+...              ....+...+  +||.+.++..                   
T Consensus       344 ~~~~~~~~~-----~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~-------------------  399 (424)
T 2e7u_A          344 KGLPHTVNR-----VGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGIYWPPSNF-------------------  399 (424)
T ss_dssp             TTCCCEEEE-----ETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHTTTEECCSSSS-------------------
T ss_pred             CCCceEEEe-----eceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHHHCCeEEeccCC-------------------
Confidence            1221 1222     144555555421              122444444  6888776521                   


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                          ..+|+  +..++++|+++++++|+++
T Consensus       400 ----~~~~~--~~~~t~~~i~~~l~~l~~~  423 (424)
T 2e7u_A          400 ----EAAFL--SVAHREEDVEKTLEALRKA  423 (424)
T ss_dssp             ----SCEEC--CTTCCHHHHHHHHHHHHHH
T ss_pred             ----CceEe--eccCCHHHHHHHHHHHHHh
Confidence                24554  4568999999999999875

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.87  E-value=6.5e-21  Score=188.95  Aligned_cols=323  Identities=16%  Similarity=0.048  Sum_probs=202.5

Q ss_pred             CcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC-----CCC--cEE
Q 040741           57 RPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA-----SPK--EII  122 (457)
Q Consensus        57 ~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~-----~~~--~i~  122 (457)
                      +.|.|..+.      ..++++.+.+++. ..... +..+    .|  .......++++.+++++ +.     +++  +++
T Consensus        30 ~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~-~~~~----~Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~i~  101 (405)
T 3k7y_A           30 EKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN-YKEK----PY--LLGNGTEDFSTLTQNLIFGNNSKYIEDKKICTI  101 (405)
T ss_dssp             SCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH-CCCC----CC--CTTSSCHHHHHHHHHHHHCSSCTTTTTTCEEEE
T ss_pred             CcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC-CCCC----CC--CCCCCcHHHHHHHHHHHcCCCCccccccceEEE
Confidence            456666554      2346788888876 33111 1111    11  11123456777777665 21     234  369


Q ss_pred             EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-C-CCCCCCHHHHHHhcC--CCce
Q 040741          123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-G-ADGIVNLDELRAAIR--PDTG  198 (457)
Q Consensus       123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~-~~~~~d~~~le~~i~--~~t~  198 (457)
                      .|+|+++|+.+++..+..+  .+ |.|++..+.|+.+...++.+   |.+++.++. + .++.+|+++++++++  ++++
T Consensus       102 ~t~G~~~al~~~~~~l~~~--~~-d~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~  175 (405)
T 3k7y_A          102 QCIGGTGAIFVLLEFLKML--NV-ETLYVTNPPYINHVNMIESR---GFNLKYINFFDYNLIDINYDLFLNDLRNIPNGS  175 (405)
T ss_dssp             EEEHHHHHHHHHHHHHHTT--TC-CEEEEESSCCHHHHHHHHTT---TCEEEEECCEETTTTEECHHHHHHHHHHSCSSC
T ss_pred             EcCchHHHHHHHHHHHHhc--CC-CEEEEeCCCCHhHHHHHHHc---CCeEEEEeccccccCCcCHHHHHHHHHhCCCCe
Confidence            9999999999999988821  17 99999999999998877666   999999987 3 346799999999986  3567


Q ss_pred             EEEEecc-ccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc--------c-cC-CCCcccEEEeccccccCCCC
Q 040741          199 LISVMAV-NNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP--------V-DV-EKWNVSLMSLSGHKIYGPKG  264 (457)
Q Consensus       199 li~i~~~-~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~--------~-~~-~~~~~Di~~~s~~K~~g~~G  264 (457)
                      ++++..+ |||||.+.+   +++|+++|++|++++++|++|.--...        + .+ .....-+++.|++|.||.+|
T Consensus       176 ~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G  255 (405)
T 3k7y_A          176 SVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYG  255 (405)
T ss_dssp             EEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTT
T ss_pred             EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCcc
Confidence            7777654 899999988   667889999999999999998632110        0 00 11123477889999887555


Q ss_pred             --ceEEEEe---cCCCccccccccCCccccccccCCCChhHHHHHHHHHHH------HHHhhHHHHHHHHHHHHHHHHHH
Q 040741          265 --VGALYMR---RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI------AKKEMDYDHKRITALHDRLLNGI  333 (457)
Q Consensus       265 --~G~l~~~---~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~------~~~~~~~~~~~~~~~~~~l~~~l  333 (457)
                        +|++++.   ++.+.++...+...   .......++.....++..++..      ..+++.+.+++++++++.+.+.|
T Consensus       256 lRiG~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L  332 (405)
T 3k7y_A          256 ERAGALHIVCKNQEEKKIVFNNLCFI---VRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKL  332 (405)
T ss_dssp             TTEEEEEEECSSHHHHHHHHHHHHHH---HHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceEEEEEeCCHHHHHHHHHHHHHH---HhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              8998752   22222222111100   0001113344444444444432      23346777788999999999999


Q ss_pred             h----hcCCC---eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCC
Q 040741          334 K----EKLDG---VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT  404 (457)
Q Consensus       334 ~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~  404 (457)
                      +    + +..   +.+..+.    +++ ++++. .+. +.+..|  .||.+.+|                         +
T Consensus       333 ~~~~~~-~g~~~~~~~~~p~----gg~-f~~~~-l~~-~~~~~L~~~gV~v~p~-------------------------~  379 (405)
T 3k7y_A          333 ETYQKK-YNLNYDWNVYKKQ----RGL-FSFVP-LLA-KIAEHLKTHHIYIINN-------------------------G  379 (405)
T ss_dssp             HHHGGG-GTCCCCGGGGSSC----CSS-EEECG-GGG-GGTTTTTTTTEECCTT-------------------------S
T ss_pred             Hhhhhh-cCCCCCCccccCC----ceE-EEecC-CCH-HHHHHHHHCCEeecCC-------------------------C
Confidence            8    6 421   2333221    222 22222 222 223333  47766543                         2


Q ss_pred             eEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          405 SIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       405 ~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                        ||+++.. ++++|++++++|++++++
T Consensus       380 --Ris~a~~-~~~~i~~~~~~i~~~~~~  404 (405)
T 3k7y_A          380 --RINVSGI-TKNNVDYIADKICLSLSQ  404 (405)
T ss_dssp             --EEEGGGC-CTTHHHHHHHHHHHHHHC
T ss_pred             --eEEEecc-CHHHHHHHHHHHHHHHhh
Confidence              8998753 468999999999998864

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.87  E-value=8.6e-21  Score=187.17  Aligned_cols=316  Identities=14%  Similarity=0.092  Sum_probs=202.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC
Q 040741          100 EVAVETARSQIADLIGASPKE-IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV  178 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~-i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~  178 (457)
                      ....+.+..++.+++|.+... .++++|+|.+.++++.+.+.....+++.||+++..|.|+..++..+   |+.+++++.
T Consensus        97 ~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~---Gl~p~~v~~  173 (450)
T 3bc8_A           97 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIEN  173 (450)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECC
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHc---CCeeEEEEe
Confidence            356667889999999997543 6999999855555555554322234789999999999999999888   999999876


Q ss_pred             ---CCCCCCCHHHHHHhcCC----CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCccc-C--C--C
Q 040741          179 ---GADGIVNLDELRAAIRP----DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD-V--E--K  246 (457)
Q Consensus       179 ---~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~-~--~--~  246 (457)
                         +..+.+|++.|+++|++    .+.+|+....++.+|.+.|+++|+++|++||+++|+|+||+.-..... +  .  .
T Consensus       174 ~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~a~~  253 (450)
T 3bc8_A          174 VLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGAR  253 (450)
T ss_dssp             EEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHH
T ss_pred             eecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHHHhc
Confidence               45578999999999964    344555555544466899999999999999999999999986432211 1  1  1


Q ss_pred             -CcccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          247 -WNVSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       247 -~~~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                       .++|+++.|.|| ++.+.|++++.++++ .+.++...+.+.      .  +.++ .+-.+..-+.+..+++.+..++..
T Consensus       254 ~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~~~g~------~--s~Sp-sL~l~~~l~~~G~~g~~~~i~~~~  324 (450)
T 3bc8_A          254 VGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR------A--SASP-SLDVLITLLSLGCSGYRKLLKERK  324 (450)
T ss_dssp             HSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC------B--CSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHHhhcC------C--cccH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence             268999999999 567888888888643 222222222111      1  1121 122121122334456778888888


Q ss_pred             HHHHHHHHHHhhcCC---CeEEeCCCCCcccceEEEEEcc------ccchHHHhcc-----cCeEecc-cCccCCCCCCh
Q 040741          324 ALHDRLLNGIKEKLD---GVVVNGSMERRYIGNLNLSFAY------VEGESLLMGL-----KEVAVSS-GSACTSASLEP  388 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l-----~~i~~~~-g~~~~~~~~~~  388 (457)
                      ++++++++.|.+ ++   +..+.+.+..  +.-..+.+..      .+...+.-.+     .|.-+.+ |..   .... 
T Consensus       325 ~~a~~l~~~l~~-~~~~~g~~~l~~~~~--~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~---~~~~-  397 (450)
T 3bc8_A          325 EMFVYLSTQLKK-LAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNV---QTVS-  397 (450)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCE---EEET-
T ss_pred             HHHHHHHHHHHh-hHHhcCceecCCccC--CCcceeecccccccccCCCceeEEEecCCCCccceeeecccc---cchh-
Confidence            999999999987 67   7777664322  1112232321      1223333222     2333220 000   0000 


Q ss_pred             hHHHHHcCCCcc-CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          389 SYVLRALGVDED-MAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       389 ~~~l~~~g~~~~-~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ...++.+|+..+ .....|-+.++...+++|+++++++|++..++++
T Consensus       398 ~~~l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~~~~  444 (450)
T 3bc8_A          398 GHTFRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVR  444 (450)
T ss_dssp             TEEEETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence            001123344333 2457888999999999999999999999987664

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.86  E-value=1.2e-19  Score=175.78  Aligned_cols=334  Identities=14%  Similarity=0.201  Sum_probs=215.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCc----EEEeCChHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKE----IIFTSGATESNNVSI  135 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~----i~~t~g~T~a~~~al  135 (457)
                      .++-+.+++.|++++...+.+.|  |.|..+ |..|....+.++. +.++..++||++..+    +. ..||+.||..++
T Consensus        60 IASEN~~S~aV~~a~gS~ltnKYaEGyPg~R-yYgGce~vD~iE~la~~rak~lF~a~~A~w~VNVQ-P~SGs~AN~avy  137 (490)
T 3ou5_A           60 IASENFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQ-PYSGSPANLAVY  137 (490)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGTCCCCC-----------CHHHHHHHHHHHHHHHHTTCCTTTEEEECC-CSSHHHHHHHHH
T ss_pred             ecCCCcCCHHHHHHhcCcccccccCCCCCcc-ccCCChHHHHHHHHHHHHHHHHhCCCccccCCCCC-cCCHHHHHHHHH
Confidence            45666899999999999999877  567653 3335555455555 678889999998763    33 345888999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHH-----HHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-----HLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVN  206 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-----~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~  206 (457)
                      .+++    +|||.|+..+..|.+.+....     .....|  +++...+++ .++.+|.+++++... .++++|++....
T Consensus       138 ~All----~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~~kPklIi~G~Sa  213 (490)
T 3ou5_A          138 TALL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSA  213 (490)
T ss_dssp             HHHC----C-CCCEECBC----------------------------CBCEETTTTEECHHHHHHHHHHHCCSEEEECCSS
T ss_pred             HHHc----CCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhhcCCCeEEECCcc
Confidence            9999    999999998888776654321     110112  344445555 568899999999775 578899886544


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCC-----
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPR-----  275 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~-----  275 (457)
                        +-...|++++++||++.|.++++|.||-.|     ..+-.+ + .+|++++|.|| +.||+| |+|+.+++..     
T Consensus       214 --Y~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~-~-~ADvVTtTTHKTLrGPrG-G~Il~~~~~~~~~~k  288 (490)
T 3ou5_A          214 --YARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-K-HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPK  288 (490)
T ss_dssp             --CCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGG-G-TCSEEEEESSSTTCSCSC-EEEEEECSEEEECC-
T ss_pred             --CccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCcc-c-cceEEeccccccccCCCc-eEEEecccccccccc
Confidence              346688999999999999999999999643     333333 2 38999999999 789997 9999887421     


Q ss_pred             ----------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeC
Q 040741          276 ----------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNG  344 (457)
Q Consensus       276 ----------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  344 (457)
                                +++.....-+      ..|.|-...+++...++..... ++....+++.++++.|.+.|.+  .|+.++.
T Consensus       289 ~~~~~~~~~~kkin~aVFPg------~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~--~G~~vvs  360 (490)
T 3ou5_A          289 TGREIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVS  360 (490)
T ss_dssp             -CCEEECCCHHHHHHHHTTT------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGG
T ss_pred             ccchhHHHHHHHHHhhcCcc------ccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh--CCCeeec
Confidence                      1111111111      1234555677777777776554 6889999999999999999999  6898885


Q ss_pred             CCCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCH
Q 040741          345 SMERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTE  416 (457)
Q Consensus       345 ~~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~  416 (457)
                      ....  ...+.+.+.  +.++......|  .||.+........              ......+.|||+...    ...+
T Consensus       361 GgTd--nHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D--------------~sp~~~SGiRiGTpa~TtRG~~e  424 (490)
T 3ou5_A          361 GGTD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFRE  424 (490)
T ss_dssp             GSCS--SSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCH
T ss_pred             CCCC--ceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC--------------CCCCCCCeeEECCHHHHhCCCCH
Confidence            4332  334444443  44555565555  4665543211100              112234789999654    3468


Q ss_pred             HHHHHHHHHHHHHHH
Q 040741          417 AEVDRAIELTVKQVE  431 (457)
Q Consensus       417 edid~~~~~l~~~~~  431 (457)
                      +|++++.+.|.++++
T Consensus       425 ~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          425 DDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988875

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.86  E-value=2.6e-21  Score=188.09  Aligned_cols=309  Identities=15%  Similarity=0.090  Sum_probs=202.9

Q ss_pred             HHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CC
Q 040741          106 ARSQIADLIGASPK-EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---AD  181 (457)
Q Consensus       106 ~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~  181 (457)
                      +.++|+++ |.+.. ..++++|+|.++..++.+.+......++.||+++..|.|+..++..+   |+++++++..   ..
T Consensus       122 ~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~---Gl~Pv~V~p~~d~~~  197 (501)
T 3hl2_A          122 VLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITA---GFEPVVIENVLEGDE  197 (501)
T ss_dssp             HHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECEEEETTE
T ss_pred             HHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHc---CCeEEEEeeeecccc
Confidence            45566666 88653 58999999978777777776311012499999999999999999888   9999999873   34


Q ss_pred             CCCCHHHHHHhcCCC---ceEEEEecc-ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc-----cCCCCc-ccE
Q 040741          182 GIVNLDELRAAIRPD---TGLISVMAV-NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV-----DVEKWN-VSL  251 (457)
Q Consensus       182 ~~~d~~~le~~i~~~---t~li~i~~~-~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~~~~~~-~Di  251 (457)
                      ..+|+++++++|++.   ..++++..+ ++..|.+.|+++|+++|++||+++++|+||+.-....     ..-..+ +|+
T Consensus       198 ~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~  277 (501)
T 3hl2_A          198 LRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDA  277 (501)
T ss_dssp             EEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcE
Confidence            678999999999753   233333333 3334567899999999999999999999998643211     111235 999


Q ss_pred             EEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHH-HHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040741          252 MSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIV-GFGSACEIAKKEMDYDHKRITALHDR  328 (457)
Q Consensus       252 ~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~-al~~al~~~~~~~~~~~~~~~~~~~~  328 (457)
                      ++.|.|| ++.|.|.|+++.+++ .++++...+.          |+.+....+ .+...+.+..+++.++.++..+++++
T Consensus       278 vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~yP----------Gr~S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~  347 (501)
T 3hl2_A          278 FVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYP----------GRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSY  347 (501)
T ss_dssp             EEEEHHHHHCCCSSCEEEEESCHHHHHHHHHTSC----------SCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccceeecCceEEEeCCHHHHHHHHHhCC----------CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 677877566666653 3333333232          233333333 44445566677899999999999999


Q ss_pred             HHHHHhhcCCC---eEEeCCCCCcccceEEEEEccccc------hHHHhcc-----cCeEe-cccCccCCCCCChhHHHH
Q 040741          329 LLNGIKEKLDG---VVVNGSMERRYIGNLNLSFAYVEG------ESLLMGL-----KEVAV-SSGSACTSASLEPSYVLR  393 (457)
Q Consensus       329 l~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l-----~~i~~-~~g~~~~~~~~~~~~~l~  393 (457)
                      +++.|++ +..   -++...+  ..+.-+.+.+.....      ..+-..|     .|--+ .+|..-    .-..+.++
T Consensus       348 L~~~L~~-la~~~ge~ll~~~--~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~----~i~g~~f~  420 (501)
T 3hl2_A          348 LSNQIKK-LSEAYNERLLHTP--HNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQ----TVSGYTFR  420 (501)
T ss_dssp             HHHHHHH-HHHTTTCCBCCCT--TCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCE----EETTEEES
T ss_pred             HHHHHHH-HHHhcChhhcCCC--CCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCce----EECCeeec
Confidence            9999988 433   2333222  235555566653321      2233333     22222 222200    00011122


Q ss_pred             HcCCC-ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          394 ALGVD-EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       394 ~~g~~-~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      .+|-. ..+...++-++....++++|||.++++|++++.++++
T Consensus       421 ~~g~h~~~~~~~yl~~a~aiG~~~~~v~~~~~~l~~~~~~~~~  463 (501)
T 3hl2_A          421 GFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK  463 (501)
T ss_dssp             STTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccCCCCCCchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            33332 2345689999999999999999999999999988754

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.85  E-value=1.1e-20  Score=187.41  Aligned_cols=329  Identities=13%  Similarity=0.045  Sum_probs=210.2

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh-CC--CCCc--EEEeCChHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI-GA--SPKE--IIFTSGATESNNV  133 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~-g~--~~~~--i~~t~g~T~a~~~  133 (457)
                      +|.|..+.+++.+.|.+|.........  .+....      .....++++.+++++ |-  +.+.  .+-|.|||.|+..
T Consensus        53 ~y~d~~g~~~vl~~Vk~A~~~~~~~~~--~~~Y~p------~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~  124 (420)
T 4h51_A           53 AYRDEQGRPYPLRVVRKAEQLLLDMNL--DYEYLP------ISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSL  124 (420)
T ss_dssp             CCBCTTSCBCCCHHHHHHHHHHHHTTC--CCCCCC------TTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHhcCCC--CCCCCC------cCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHH
Confidence            566666777888999999877765421  111111      234567777777765 32  2222  4558999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcE-EEEEeC--CCCCCCCHHHHHHhc---CCCceEEEEecccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFE-ITYLPV--GADGIVNLDELRAAI---RPDTGLISVMAVNN  207 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~-v~~v~~--~~~~~~d~~~le~~i---~~~t~li~i~~~~~  207 (457)
                      ++..+...+.++||.|+++++.|+++...++.+   |.+ |...+.  +.+..+|.+.+++.+   .+++++++...+||
T Consensus       125 a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~a---G~~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~~~p~N  201 (420)
T 4h51_A          125 GAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAA---GWKNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILHQCAHN  201 (420)
T ss_dssp             HHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHT---TCCCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEESSSCT
T ss_pred             HHHHHHHhcCCCCCEEEEecCCchhHHHHHHHc---CCeEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEeCCCCC
Confidence            988887766689999999999999998887776   876 433332  234567887777665   46788899999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC-cc--c-------CCCCcccEEEeccccccCCCC--ceEEEEec
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI-PV--D-------VEKWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~-~~--~-------~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      |||...+   +++|+++|++++++++.|++|..-.. ..  +       ......-+++.|++|.||..|  +|++++..
T Consensus       202 PtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RvG~~~~~~  281 (420)
T 4h51_A          202 PTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSERAGTLSLLL  281 (420)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEEEEEC
T ss_pred             CCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccccccCceEEEEecc
Confidence            9999987   77899999999999999999853211 10  0       011123467889999777655  99999887


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCC--C-eEEe
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLD--G-VVVN  343 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~-~~~~  343 (457)
                      +..+........-....+.....++......+...+.      ..+++++.+.++++++++.+.+.|++ +.  + +..+
T Consensus       282 ~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~-~g~~~~~~~i  360 (420)
T 4h51_A          282 KDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLR-LQTPGSWEHV  360 (420)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSCCTHH
T ss_pred             cCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCee
Confidence            6544332211100000011122444444443333332      12345778888999999999999988 31  1 1111


Q ss_pred             CCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHH
Q 040741          344 GSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDR  421 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~  421 (457)
                      .++    .++  |.+.+.+.+++ +.|  ++|.+.+|                         +  ||++.. .+.++|++
T Consensus       361 ~~q----~Gm--F~~~gls~e~v-~~L~e~~Vy~~~~-------------------------g--Ris~Ag-l~~~ni~~  405 (420)
T 4h51_A          361 INQ----IGM--FSFLGLSKAQC-EYCQNHNIFITVS-------------------------G--RANMAG-LTHETALM  405 (420)
T ss_dssp             HHC----CSS--EEECCCCHHHH-HHHHHTTEECCTT-------------------------C--EEEGGG-CCHHHHHH
T ss_pred             cCC----Cce--EEecCcCHHHH-HHHHhCCEEEcCC-------------------------C--EEEecc-CCHHHHHH
Confidence            111    222  33444544433 334  46665432                         2  899875 46899999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          422 AIELTVKQVEKLR  434 (457)
Q Consensus       422 ~~~~l~~~~~~~~  434 (457)
                      ++++|.++++++.
T Consensus       406 ~a~aI~~vvr~i~  418 (420)
T 4h51_A          406 LAQTINDAVRNVN  418 (420)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999998764

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=99.84  E-value=1e-19  Score=181.32  Aligned_cols=326  Identities=16%  Similarity=0.170  Sum_probs=203.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+.      +..+|++.+|+.+.+.....  ....+       ....++.+.|+++++. .+.+.|++|||
T Consensus        84 ~dG~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~~--~~~~~-------~~~~~lae~l~~~~p~-~~~v~f~~SGs  153 (454)
T 4ao9_A           84 ADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGIN--LTGHN-------LLEGRLARLICERFPQ-IEQLRFTNSGT  153 (454)
T ss_dssp             TTCCEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCSC--CCSEE-------SSHHHHHHHHHHHSTT-CSEEEEESSHH
T ss_pred             CCCCEEEEccccHHhhcccCCCHHHHHHHHHHHhcCCC--ccCCc-------HHHHHHHHHHHHhCCC-CCEEEEeCchH
Confidence            455568887543      24689999999999875321  11111       2345678888888863 45699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHhc--CcEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEE
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQE--GFEITYLPVGADGIVNLDELRAAIR---PDTGLISV  202 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~~--G~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i  202 (457)
                      +|++.|++..+.+.  .+++|+.... .|.............  ......+|.+     |++.+++.++   ++...|++
T Consensus       154 EA~e~AiklAr~~t--gr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIv  226 (454)
T 4ao9_A          154 EANLMALTAALHFT--GRRKIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLV  226 (454)
T ss_dssp             HHHHHHHHHHHHHH--TCCEEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEE
T ss_pred             HHHHHHHHHHHhcc--cCCeEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEe
Confidence            99999999877653  3455655444 454332211000001  1233444433     8899988885   45789999


Q ss_pred             eccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCcc----cCCCCcccEEEecccc-ccCCCCceEEEEecC
Q 040741          203 MAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIPV----DVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR  273 (457)
Q Consensus       203 ~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~~----~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~  273 (457)
                      +.+....|.+.|    +++|.++|++||+++|+|+++. |....    ......+|+++++  | +.|...+|++.++++
T Consensus       227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~e  303 (454)
T 4ao9_A          227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRAD  303 (454)
T ss_dssp             CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHH
T ss_pred             ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHH
Confidence            999999999988    9999999999999999999997 32211    1112247998777  9 444445899999987


Q ss_pred             CCccccccccCCccccccccC--CCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCC-eEEeCCCC
Q 040741          274 PRIRVEPLINGGGQERGIRSG--TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDG-VVVNGSME  347 (457)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~--t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~  347 (457)
                      ..+.+.+.....     ...+  ..++..+++..++++.+++  +...++.+++.++|++.|++.   .+- ..+.+   
T Consensus       304 i~~~~~~~~~~~-----~h~~T~~gnPla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg---  373 (454)
T 4ao9_A          304 VMALFDPRTGPL-----AHSGTFNNNVMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNALCANEGVAMQFTG---  373 (454)
T ss_dssp             HHGGGCTTTCSC-----CCCCTTTTCHHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHHHHHHHTBSCEEEE---
T ss_pred             HHHHHhhccCCc-----cccCCCCCCHHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHHHHhhCCCCEEEee---
Confidence            666554422110     1112  3456667777777877654  455666666667776666541   221 12222   


Q ss_pred             CcccceEEEEEcccc----------chH----HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          348 RRYIGNLNLSFAYVE----------GES----LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       348 ~~~~~~~~~~~~~~~----------~~~----~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                        .+.++.+.|...+          ...    +...+  +||.+.+.                         +.  +.++
T Consensus       374 --~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~ll~~Gv~~~p~-------------------------~~--~~~s  424 (454)
T 4ao9_A          374 --IGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHLLNEDIYSSPR-------------------------GF--VVLS  424 (454)
T ss_dssp             --ETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHHHHTTEECCTT-------------------------CE--EECC
T ss_pred             --eceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHHHHCCEEEcCC-------------------------CC--EEEe
Confidence              2444444442110          011    11112  46655422                         23  3345


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhcChh
Q 040741          412 RFTTEAEVDRAIELTVKQVEKLREMSPL  439 (457)
Q Consensus       412 ~~~t~edid~~~~~l~~~~~~~~~~~~~  439 (457)
                      ..+|++|||++++++++++++++...|.
T Consensus       425 ~~~T~~dId~~l~al~~~l~~~~a~lPr  452 (454)
T 4ao9_A          425 LPLTDADIDRYVAAIGSFIGGHGALLPR  452 (454)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHSGGGSCB
T ss_pred             CCCCHHHHHHHHHHHHHHHHhccccCCC
Confidence            5579999999999999999999888774

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=99.83  E-value=1.3e-17  Score=166.77  Aligned_cols=337  Identities=15%  Similarity=0.117  Sum_probs=208.2

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+....-. .    .+. ...+...++.++|.+++..+ .+.++|++||
T Consensus        61 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~----~~~-~~~~~~~~lae~L~~~~p~~~~~~v~f~~sG  134 (456)
T 4atq_A           61 VDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHT-C----FMV-TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSG  134 (456)
T ss_dssp             TTSCEEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCSCC-T----TTT-SCCHHHHHHHHHHHHHSSCSSCEEEEEESSH
T ss_pred             CCCCEEEEccccHHHHhcCCCCHHHHHHHHHHHhhccCc-c----cCc-cCcHHHHHHHHHHHHhCCCCCCcEEEEeCCh
Confidence            455568887442      357899999999988764211 0    001 11145567778888988754 4469999999


Q ss_pred             HHHHHHHHHHhhhhhcCCCCEEEEcCC-CCcchHHHHHHHHh-----c-----CcEEEEEeCCC------CCCCCHHHHH
Q 040741          128 TESNNVSIKGVMHFYKDKKRHVITTQT-EHKCVLDSCRHLQQ-----E-----GFEITYLPVGA------DGIVNLDELR  190 (457)
Q Consensus       128 T~a~~~al~~~~~~~~~~g~~vi~~~~-~h~~~~~~~~~~~~-----~-----G~~v~~v~~~~------~~~~d~~~le  190 (457)
                      |+|++.|++....+  ..+.+|+.... .|.....+......     .     ...+..+|...      ....+.+.++
T Consensus       135 sEA~e~AlklAr~~--t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~  212 (456)
T 4atq_A          135 AEAVENAVKVARLA--TGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAK  212 (456)
T ss_dssp             HHHHHHHHHHHHHH--HCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhhh--hcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHH
Confidence            99999999977654  34556665554 55555444332210     0     12345555431      1112233333


Q ss_pred             Hh-------cC-CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--cccCC--CCcccEEE
Q 040741          191 AA-------IR-PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVDVE--KWNVSLMS  253 (457)
Q Consensus       191 ~~-------i~-~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~~~--~~~~Di~~  253 (457)
                      +.       +. ++...|+++.+....|.+.|    +++|.++|++||+++|+|+++.. |..  .+...  ...+|+++
T Consensus       213 ~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt  292 (456)
T 4atq_A          213 RAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIIT  292 (456)
T ss_dssp             HHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEE
T ss_pred             HHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhh
Confidence            32       22 35788999999998898876    99999999999999999999874 322  12222  22479998


Q ss_pred             ecccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040741          254 LSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       254 ~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~  332 (457)
                      ++  | +.|...+|+++++++..+.+.+...++.       ...++..+++..+.++.+++  +.+.++.+++.+++.+.
T Consensus       293 ~g--K~lggg~P~~av~~~~~i~~~~~~~~~~~T-------f~gnpla~aaala~L~~i~~--~~l~~~~~~~g~~l~~~  361 (456)
T 4atq_A          293 MA--KGIAGGLPLSAITGRADLLDAVHPGGLGGT-------YGGNPVACAAALAAIDTMEQ--HDLNGRARHIEELALGK  361 (456)
T ss_dssp             EC--GGGGTTSSCEEEEEEHHHHTTSCTTSSCCS-------SSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred             hh--hcccCcCCceeeEecHHHHhcccccCCCCC-------CCCChHHHHhhHHHHHHHhh--ccHHHHHHHHHHHHHHH
Confidence            87  8 4444458999999877666655443321       24567777777788888876  34555666666666655


Q ss_pred             Hhhc---CCC--eEEeCCCCCcccceEEEEEcccc----c----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          333 IKEK---LDG--VVVNGSMERRYIGNLNLSFAYVE----G----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       333 l~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      |++.   ++.  ..++++ ....+.++.+.+....    .    ..+...+  +|+.+.+..                  
T Consensus       362 L~~l~~~~~~~~~~~v~~-VRG~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~~Gvl~~~~g------------------  422 (456)
T 4atq_A          362 LRELAAELSAGGGSVVGD-IRGRGAMLAIELVQPGSKEPNAELTKAVAAACLKEGVIILTCG------------------  422 (456)
T ss_dssp             HHHHHHHCC-----CEEE-EEEETTEEEEEEBCTTSCCBCHHHHHHHHHHHHHTTEECEEEC------------------
T ss_pred             HHHHHHhcccccCCceEE-eeecceEEEEEEecCCCCCcCHHHHHHHHHHHHHCCCEEEecC------------------
Confidence            5441   221  111111 1122445555553211    1    1233333  577664321                  


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                         ...+.|||.++..+|++|||+++++|+++++.
T Consensus       423 ---~~~~~irl~PpL~it~~~id~~l~~l~~al~a  454 (456)
T 4atq_A          423 ---TYGNVIRLLPPLVISDELLIDGLEVLAAAIKA  454 (456)
T ss_dssp             ---TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence               11278999999999999999999999999874

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=99.72  E-value=4e-22  Score=200.09  Aligned_cols=327  Identities=12%  Similarity=0.062  Sum_probs=204.6

Q ss_pred             CcEEecCCCCC------CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHH
Q 040741           57 RPLYLDMQATT------PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATES  130 (457)
Q Consensus        57 ~~i~l~~~~~~------~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a  130 (457)
                      +.-|+|+.+..      ..+|++.+++.+.+.....      +  + ...+...++++.|+++++ ..+.++|++|||+|
T Consensus        99 G~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~------~--~-~~~~~~~~Lae~L~~~~p-~~~~v~~~nSGseA  168 (465)
T 2yky_A           99 GHAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN------L--S-TQTENEALFAEAVCDRFP-SIDLVRFTNSGTEA  168 (465)
Confidence            34477765533      2479999999998765211      0  1 123677889999999995 34569999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH--HhcCc--EEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEe
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL--QQEGF--EITYLPVGADGIVNLDELRAAIR---PDTGLISVM  203 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G~--~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~  203 (457)
                      +..+++.+..+  ..+++||+....|.+...... .  ...|+  .+..++.     .|+++|+++++   +++++|+++
T Consensus       169 ~~~Aik~ar~~--tgr~~ii~~~~~yHG~~~~~~-sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~~~~~~~aavi~e  240 (465)
T 2yky_A          169 NLMALATATAI--TGRKTVLAFDGGYHGGLLNFA-SGHAPTNAPYHVVLGVY-----NDVEGTADLLKRHGHDCAAILVE  240 (465)
Confidence            99999976432  345777776665544333222 1  11233  2233332     38899999998   678899999


Q ss_pred             ccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc--ccCCCC--cccEEEeccccccCC-CCceEEEEecCC
Q 040741          204 AVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP--VDVEKW--NVSLMSLSGHKIYGP-KGVGALYMRRRP  274 (457)
Q Consensus       204 ~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~--~~~~~~--~~Di~~~s~~K~~g~-~G~G~l~~~~~~  274 (457)
                      .+++++|.+.|    +++|.++|++||+++|+|++++ +...  .....+  .+|++  +++|.+|+ -.+|+++++++.
T Consensus       241 pv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i  317 (465)
T 2yky_A          241 PMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDL  317 (465)
Confidence            88888998877    9999999999999999999999 5221  111222  35665  56796654 238999999887


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceE
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL  354 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  354 (457)
                      .+.+.+...+... . ......++..+++..++++.+++  +...++.+++.+++++.|.+......+... ....+.++
T Consensus       318 ~~~l~~~~~g~~~-~-~~T~~~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-v~g~G~~~  392 (465)
T 2yky_A          318 MERFDPARDGAFA-H-AGTFNNNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQ-FTGLGSLG  392 (465)
Confidence            7776652111000 0 01113455666666677877765  456777788888888877762111222111 11224444


Q ss_pred             EEEEcc--c---------c---chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHH
Q 040741          355 NLSFAY--V---------E---GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE  418 (457)
Q Consensus       355 ~~~~~~--~---------~---~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~ed  418 (457)
                      .+.+..  +         +   ...+...+  +||.+.++.+                       ..    ++..++++|
T Consensus       393 ~i~~~~~~~~~~~~~~~~d~~~~~~~~~~ll~~GV~v~p~~~-----------------------~~----~s~~~t~ed  445 (465)
T 2yky_A          393 TIHFSRAPIRSAGDVRAADQQLKELFFFHMLRKGIYLAPRGM-----------------------YA----LSLEIADAG  445 (465)
Confidence            444432  0         0   11233333  4555543310                       11    445678999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 040741          419 VDRAIELTVKQVEKLREM  436 (457)
Q Consensus       419 id~~~~~l~~~~~~~~~~  436 (457)
                      ||++++++++++++++++
T Consensus       446 id~~l~~l~~~l~~~~~~  463 (465)
T 2yky_A          446 RDAFAEALADFIGEQRAL  463 (465)
Confidence            999999999999887654

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=99.81  E-value=1.6e-17  Score=166.78  Aligned_cols=341  Identities=17%  Similarity=0.127  Sum_probs=209.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+|+.+.+.+......    .++.. .+...++.++|.++++.+.+.++|++|||
T Consensus        64 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~~~~~----~~~~~-~~~~~~lAe~L~~~~p~~~~~v~f~~sGs  138 (473)
T 4e3q_A           64 VNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHA----FFGRM-SDQTVMLSEKLVEVSPFDSGRVFYTNSGS  138 (473)
T ss_dssp             TTCCEEEETTTTTTTCTTCSCCHHHHHHHHHHHHHCCCCCC----CTTEE-EHHHHHHHHHHHHHSSCSSCEEEEESSHH
T ss_pred             CCCCEEEEcccCHHHhhccCCCHHHHHHHHHHHHhcccccc----ccccc-CHHHHHHHHHHHhhCCCCccEEEEeCchH
Confidence            355568887543      35679999999999886431100    11111 14556788889999887667799999999


Q ss_pred             HHHHHHHHHhhhhhcCC----CCEEEEcC-CCCcchHHHHHHHH-----hcC---cEEEEEeCC------CCCCC-----
Q 040741          129 ESNNVSIKGVMHFYKDK----KRHVITTQ-TEHKCVLDSCRHLQ-----QEG---FEITYLPVG------ADGIV-----  184 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~----g~~vi~~~-~~h~~~~~~~~~~~-----~~G---~~v~~v~~~------~~~~~-----  184 (457)
                      +|++.|++....++..+    +.+||... ..|.....+.....     ..+   .....++.+      ..+..     
T Consensus       139 EA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  218 (473)
T 4e3q_A          139 EANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFV  218 (473)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHH
Confidence            99999999876553322    34566554 45555554433221     001   123334332      11111     


Q ss_pred             --CHHHHHHhcC----CCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCC--ccc--CCCCcc
Q 040741          185 --NLDELRAAIR----PDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKI--PVD--VEKWNV  249 (457)
Q Consensus       185 --d~~~le~~i~----~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~--~~~--~~~~~~  249 (457)
                        ..+++++.|.    ++.+.|+++.+....|.+.|    +++|.++|++||+++|.|+++.. |..  .+.  .....+
T Consensus       219 ~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~P  298 (473)
T 4e3q_A          219 ARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTP  298 (473)
T ss_dssp             HHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCC
Confidence              1234455442    45688999999998898876    89999999999999999999974 322  111  112348


Q ss_pred             cEEEecccc-ccCC-CCceEEEEecCCCccccccccCC-ccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHK-IYGP-KGVGALYMRRRPRIRVEPLINGG-GQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K-~~g~-~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++++  | +.|. ..+|+++++++..+.+....... ....+.. .+.++..+++..++++.+++  +...++.+++.
T Consensus       299 Di~t~~--K~l~gG~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T-~~Gnpla~Aaala~L~~i~~--~~l~~~~~~~g  373 (473)
T 4e3q_A          299 DAIISS--KNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFT-ASGHPVGCAIALKAIDVVMN--EGLAENVRRLA  373 (473)
T ss_dssp             SEEEEC--GGGGTTSSCCEEEEECHHHHHHHHHHHHHHSCCCCCCT-TTTCHHHHHHHHHHHHHHHH--SSHHHHHHHHH
T ss_pred             ChHHhc--ccccCCCCCcccccccHHHHHHhccccccccccccCCC-CCCCcchhhhhhhhhhhhcc--ccHHHHHHHHH
Confidence            999877  9 4332 45899999987665543321100 0000111 14566777777788888876  45566666777


Q ss_pred             HHHHHHHhhc--CCCeEEeCCCCCcccceEEEEEcccc------------chHHHhcc--cCeEecccCccCCCCCChhH
Q 040741          327 DRLLNGIKEK--LDGVVVNGSMERRYIGNLNLSFAYVE------------GESLLMGL--KEVAVSSGSACTSASLEPSY  390 (457)
Q Consensus       327 ~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l--~~i~~~~g~~~~~~~~~~~~  390 (457)
                      +++++.|++.  .+.+.-+    ...+.++.+.+....            ...+...+  +|+.+.+.            
T Consensus       374 ~~l~~~L~~l~~~~~v~~v----RG~Gl~~gielv~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~------------  437 (473)
T 4e3q_A          374 PRFEERLKHIAERPNIGEY----RGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPL------------  437 (473)
T ss_dssp             HHHHHHHHHHTTSTTEEEE----EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE------------
T ss_pred             HHHHHHHHHHhcCCCeeEE----eecceEEEEEEecCccccccccccHHHHHHHHHHHHHCCcEEEec------------
Confidence            7777776651  2443211    112344444442110            11233332  46655432            


Q ss_pred             HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          391 VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       391 ~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                                  ++.|||.++..+|++|||+++++++++++++
T Consensus       438 ------------g~~i~l~PPL~it~~eid~~~~~l~~al~~v  468 (473)
T 4e3q_A          438 ------------GQSVVLCPPFILTEAQMDEMFDKLEKALDKV  468 (473)
T ss_dssp             ------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                        2689999999999999999999999999876

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=99.70  E-value=1.1e-15  Score=163.44  Aligned_cols=337  Identities=13%  Similarity=0.061  Sum_probs=201.0

Q ss_pred             EEecCCC------CCCC-CHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHH
Q 040741           59 LYLDMQA------TTPV-DPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATES  130 (457)
Q Consensus        59 i~l~~~~------~~~~-~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a  130 (457)
                      -|||+.+      .+.. .|++.+|+.+.+.+.. ...    ..+. ..+...++.++|+++++.+ .+.++|++||++|
T Consensus       381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l~-h~~----~~~~-~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA  454 (831)
T 4a0g_A          381 QQFDACASWWTQGPDPTFQAELAREMGYTAARFG-HVM----FPEN-VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA  454 (831)
T ss_dssp             EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHHS-SCC----CTTE-ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred             heeeecccHhhcCCCCCCCHHHHHHHHHHHhhcc-ccc----cccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence            4788754      2245 8999999999987642 111    0011 1256668999999998754 3569999999999


Q ss_pred             HHHHHHHhh-hhhcCC------------CCEEEE-cCCCCcchHHHHHHHHhc------------CcEE-----------
Q 040741          131 NNVSIKGVM-HFYKDK------------KRHVIT-TQTEHKCVLDSCRHLQQE------------GFEI-----------  173 (457)
Q Consensus       131 ~~~al~~~~-~~~~~~------------g~~vi~-~~~~h~~~~~~~~~~~~~------------G~~v-----------  173 (457)
                      ++.|++... .+....            +.+||. ...+|.....++......            +..+           
T Consensus       455 ~E~AlK~A~r~~~~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  534 (831)
T 4a0g_A          455 IEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSN  534 (831)
T ss_dssp             HHHHHHHHHHHHHHTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEET
T ss_pred             HHHHHHHHHHHHHhhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccC
Confidence            999999773 333222            335554 555677777665543110            1111           


Q ss_pred             --EEEeCCCCC---------CCC------------------HHHHHHhcC--------CCceEEEEecc-ccccccccC-
Q 040741          174 --TYLPVGADG---------IVN------------------LDELRAAIR--------PDTGLISVMAV-NNEIGVIQP-  214 (457)
Q Consensus       174 --~~v~~~~~~---------~~d------------------~~~le~~i~--------~~t~li~i~~~-~~~~G~~~~-  214 (457)
                        ..++.+...         .-|                  .++|++.|+        ++++.|+++.+ ++..|.+.+ 
T Consensus       535 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~  614 (831)
T 4a0g_A          535 GSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVD  614 (831)
T ss_dssp             TEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEEC
T ss_pred             CceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCC
Confidence              112222100         011                  256788775        34678999996 888888875 


Q ss_pred             ---hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCC--CCcccEEEeccccccCC--CCceEEEEecCCCccccccccC
Q 040741          215 ---MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVE--KWNVSLMSLSGHKIYGP--KGVGALYMRRRPRIRVEPLING  284 (457)
Q Consensus       215 ---l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~--~~~~Di~~~s~~K~~g~--~G~G~l~~~~~~~~~~~~~~~~  284 (457)
                         +++|.++|++||+++|+|+++. +|..  .+...  ...+|+++++  |.+|.  ..+|+++++++..+.+.+....
T Consensus       615 ~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDiitls--K~L~gG~~Plgav~~~~~i~~~~~~~~~~  692 (831)
T 4a0g_A          615 PLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFA--KLLTGGMVPLAVTLATDAVFDSFSGDSKL  692 (831)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHSSCCSEEEEC--GGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred             HHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcCCCCcEEEEe--cccccCccCcEEEEECHHHHHHHhccccc
Confidence               9999999999999999999886 3322  11111  2247887655  95432  2479999998765554332100


Q ss_pred             CccccccccCCCChhHHHHHHHHHHHHHHh-h-HHHHHHHHHH----HHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          285 GGQERGIRSGTLPTPLIVGFGSACEIAKKE-M-DYDHKRITAL----HDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       285 ~~~~~~~~~~t~~~~~~~al~~al~~~~~~-~-~~~~~~~~~~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      .....+. ..+.++..+++..++++.++++ + ++..+..+.+    .+.+.+.+.+ .+.+.-+.    ..+.++.+.+
T Consensus       693 ~~~~hg~-T~~g~Pla~Aaala~L~~i~~~~l~~~~~~~~~~l~~~l~~~l~~~l~~-~~~v~~vr----g~Gl~~~iel  766 (831)
T 4a0g_A          693 KALLHGH-SYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELWDEELVQQISS-HSAVQRVV----VIGTLFALEL  766 (831)
T ss_dssp             GSCCCCC-TTTTCHHHHHHHHHHHHHHHCTTTCTTBCTTSSBBCCCSCHHHHHHHHH-STTEEEEE----EETTEEEEEE
T ss_pred             ccceeec-CCcccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCceeEe----ecccEEEEEE
Confidence            0000011 1255677777788888887652 1 1111111111    2234455666 56553321    1134444444


Q ss_pred             ccc---------cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          359 AYV---------EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       359 ~~~---------~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ...         ....+...+  +|+.+.+.                        ++.|||+++..+|++|||+++++|+
T Consensus       767 ~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~------------------------g~~lrl~pp~~~t~e~id~~~~~l~  822 (831)
T 4a0g_A          767 KADASNSGYASLYAKSLLIMLREDGIFTRPL------------------------GNVIYLMCGPCTSPEICRRLLTKLY  822 (831)
T ss_dssp             C---------CHHHHHHHHHHHHTTEECCCB------------------------TTEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ecCccccccchHHHHHHHHHHHHCCcEEEec------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence            211         112344444  57776543                        1799999999999999999999999


Q ss_pred             HHHHHH
Q 040741          428 KQVEKL  433 (457)
Q Consensus       428 ~~~~~~  433 (457)
                      ++++++
T Consensus       823 ~~l~~l  828 (831)
T 4a0g_A          823 KRLGEF  828 (831)
T ss_dssp             HHHTTT
T ss_pred             HHHHHh
Confidence            988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	457
d1p3wa_	391	c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich	1e-131
d1eg5a_	376	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	1e-93
d1jf9a_	405	c.67.1.3 (A:) NifS-like protein/selenocysteine lya	5e-89
d1t3ia_	408	c.67.1.3 (A:) Probable cysteine desulfurase SufS {	2e-79
d1qz9a_	404	c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen	2e-39
d2bkwa1	382	c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransfe	5e-35
d1c4ka2	462	c.67.1.5 (A:108-569) Ornithine decarboxylase major	1e-32
d1elua_	381	c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocyst	4e-31
d1pmma_	450	c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {	9e-31
d1svva_	340	c.67.1.1 (A:) Low-specificity threonine aldolase {	2e-30
d2ch1a1	388	c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas	2e-30
d1vjoa_	377	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	5e-30
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	2e-29
d1m32a_	361	c.67.1.3 (A:) 2-aminoethylphosphonate transaminase	6e-29
d1h0ca_	388	c.67.1.3 (A:) Alanine-glyoxylate aminotransferase	6e-26
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	7e-24
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	2e-23
d3bc8a1	445	c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase	4e-23
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	5e-19
d2e7ja1	364	c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (	3e-18
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	2e-17
d1bjna_	360	c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT	2e-13
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	7e-12
d1iuga_	348	c.67.1.3 (A:) Subgroup IV putative aspartate amino	2e-06
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	6e-06
d1v2da_	368	c.67.1.1 (A:) Glutamine aminotransferase {Thermus	7e-06
d1gc0a_	392	c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudom	1e-04

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

 Score =  382 bits (982), Expect = e-131
 Identities = 228/390 (58%), Positives = 306/390 (78%), Gaps = 3/390 (0%)

Query: 58  PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIG 115
           P+YLD  ATTPVDPRV + M+ F      +GNP SR+H FGW++E AV+ AR+QIADL+G
Sbjct: 3   PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 62

Query: 116 ASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITY 175
           A P+EI+FTSGATES+N++IKG  +FY+ K +H+IT++TEHK VLD+CR L++EGFE+TY
Sbjct: 63  ADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTY 122

Query: 176 LPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ 235
           L    +GI++L EL AA+R DT L+S+M VNNEIGV+Q +  IG++C+   I +H DA Q
Sbjct: 123 LAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQ 182

Query: 236 ALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT 295
           ++GK+P+D+ +  V LMS SGHKIYGPKG+GALY+RR+PR+R+E  ++GGG ERG+RSGT
Sbjct: 183 SVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT 242

Query: 296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLN 355
           LP   IVG G A  IAK+EM  + +R+  L +RL NGIK  ++ V +NG +E      LN
Sbjct: 243 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIK-DIEEVYLNGDLEHGAPNILN 301

Query: 356 LSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           +SF YVEGESL+M LK++AVSSGSACTSASLEPSYVLRALG+++++AH+SIRF +GRFTT
Sbjct: 302 VSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 361

Query: 416 EAEVDRAIELTVKQVEKLREMSPLYEMVKE 445
           E E+D  IEL  K + +LR++SPL+EM K+
Sbjct: 362 EEEIDYTIELVRKSIGRLRDLSPLWEMYKQ 391

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

 Score =  286 bits (731), Expect = 1e-93
 Identities = 159/378 (42%), Positives = 228/378 (60%), Gaps = 9/378 (2%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           Y D  ATT VD RVL+ M+ FY  +YGNP+S  H  G E+ + +E AR ++A ++G SP 
Sbjct: 4   YFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS 62

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           EI FTS ATES N  +K V   ++ +KR +ITT  EHK VL++ ++L  +GF++ Y+PV 
Sbjct: 63  EIFFTSCATESINWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVD 122

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQI--CKEFKIPFHTDAAQAL 237
           + G+V L+EL   +  DT L+S+MA NNE+G IQP+E++ +I   K  +   H DA Q +
Sbjct: 123 SRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTI 182

Query: 238 GKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLP 297
           GKIP  +EK  V   S S HK +GPKGVG  Y+R+   IR  PLI+GGGQERG+RSGT  
Sbjct: 183 GKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKGVPIR--PLIHGGGQERGLRSGTQN 240

Query: 298 TPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS 357
            P IVG   A EIA +E+    K +  L  +L++G+     G  +   +E      L++S
Sbjct: 241 VPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN--LGAHIITPLEISLPNTLSVS 298

Query: 358 FAYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT 415
           F  + G +L   L    + VS+ SACTS      +VL A+GVD  +A  +IR  + ++ T
Sbjct: 299 FPNIRGSTLQNLLSGYGIYVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNT 358

Query: 416 EAEVDRAIELTVKQVEKL 433
           E EVD  ++   + +  L
Sbjct: 359 EEEVDYFLKKIEEILSFL 376

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

 Score =  275 bits (703), Expect = 5e-89
 Identities = 91/398 (22%), Positives = 154/398 (38%), Gaps = 30/398 (7%)

Query: 54  IAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIAD 112
           + G PL YLD  A+     +V+DA   FY   Y   H   H    ++   +E  R + + 
Sbjct: 18  VNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASL 77

Query: 113 LIGASPKE-IIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG 170
            I A   E ++F  G TE  N+      +       ++I +Q EH   +   + L  + G
Sbjct: 78  FINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVG 137

Query: 171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH 230
            E+  +P+  DG + L+ L       T L+++  V+N +G   P+ E+  +  +      
Sbjct: 138 AELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVL 197

Query: 231 TDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG---- 286
            D AQA+   PVDV+  +      SGHK+YGP G+G LY++      + P   GG     
Sbjct: 198 VDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIAT 257

Query: 287 -----------QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE 335
                            +GT  T  I+G G+A E        +                E
Sbjct: 258 VSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLE 317

Query: 336 KLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRAL 395
            +  + + G   R  +   NL   +       +    +AV +G  C         ++   
Sbjct: 318 SVPDLTLYGPQNRLGVIAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMP------LMAYY 371

Query: 396 GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433
            V         R  +  + T  EVDR +   ++++ +L
Sbjct: 372 NVP-----AMCRASLAMYNTHEEVDRLVT-GLQRIHRL 403

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

 Score =  250 bits (639), Expect = 2e-79
 Identities = 82/402 (20%), Positives = 156/402 (38%), Gaps = 33/402 (8%)

Query: 53  RIAGRPL-YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIA 111
            I G PL YLD  AT+     VL+ ++ +Y +   N H   H     +  A E  R+++A
Sbjct: 17  EINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 76

Query: 112 DLIGASPKEI-IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDS-CRHLQQE 169
             I A      ++T  ATE+ N+               +ITT  EH   L        + 
Sbjct: 77  KFINARSPREIVYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKT 136

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPF 229
           G  + ++ +      +L+  +  +   T L++V+ ++N +G + P EEI Q+  +     
Sbjct: 137 GAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKV 196

Query: 230 HTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ-- 287
             DA Q+    P+DV+  +   +  SGHK+  P G+G LY +      + P   GG    
Sbjct: 197 LVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIA 256

Query: 288 ------------ERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE 335
                            +GT      +  G+A +        +           L     
Sbjct: 257 EVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLG 316

Query: 336 KLDGVVVNGSMERR----YIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYV 391
           ++  + + G   +      + + N++  +    + ++    +A+ SG  CT    +P + 
Sbjct: 317 QIPQLRLYGPNPKHGDRAALASFNVAGLHASDVATMVDQDGIAIRSGHHCT----QPLHR 372

Query: 392 LRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL 433
           L         A  S R  +  + T+ E+D  ++ +++   + 
Sbjct: 373 LFD-------ASGSARASLYFYNTKEEIDLFLQ-SLQATIRF 406

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

 Score =  144 bits (363), Expect = 2e-39
 Identities = 62/395 (15%), Positives = 129/395 (32%), Gaps = 46/395 (11%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           YLD  +        L          +GN   R+           E   +++A LIGA   
Sbjct: 30  YLDGNSLGARPVAALARAQAVIAEEWGNGLIRSW-NSAGWRDLSERLGNRLATLIGARDG 88

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
           E++ T   + +    +   +     +        TE      +  ++ +   ++      
Sbjct: 89  EVVVTDTTSINLFKVLSAALRVQATRSPERRVIVTETSNFP-TDLYIAEGLADMLQQGYT 147

Query: 180 ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGK 239
              + + +EL  AI  DT ++ +  VN + G +  M+ +  +  E       D A + G 
Sbjct: 148 LRLVDSPEELPQAIDQDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGA 207

Query: 240 IPVDVEKWNVSLMSLSGHKI--YGPKGVGALYMRRRPRIRVEPLINGGGQERG------- 290
           +PVD+ +          +K    GP     +++  +    V   ++G             
Sbjct: 208 VPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPR 267

Query: 291 ---------IRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKL---D 338
                       GT P   +       ++  +      +R +     L   + E+     
Sbjct: 268 YEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAH 327

Query: 339 GVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVD 398
            + +    E    G+ ++SF + EG +++  L +  V  G                    
Sbjct: 328 ELTLVTPREHAKRGS-HVSFEHPEGYAVIQALIDRGV-IGDYR----------------- 368

Query: 399 EDMAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEK 432
                  +RFG     TT  EV  A+++  + +++
Sbjct: 369 ---EPRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 382

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (331), Expect = 5e-35
 Identities = 44/393 (11%), Positives = 95/393 (24%), Gaps = 49/393 (12%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG 126
             +   V  A+    L         +  F    +  ++  R+       +  +  +    
Sbjct: 12  IILSGAVQKALDVPSL------GHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 65

Query: 127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNL 186
            T   ++     +      K  ++ + T       +              P+     V L
Sbjct: 66  GTLGWDIFASNFILSKAPNKNVLVVS-TGTFSDRFADCLRSYGAQVDVVRPLKIGESVPL 124

Query: 187 DELRAAIRPDTGLISVMAVN---NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVD 243
           + +   +  ++     +        +                +  F  DA  ++G    +
Sbjct: 125 ELITEKLSQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEEFE 184

Query: 244 VEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGG---------------- 286
            ++W V     +  K I  P G+       R           G                 
Sbjct: 185 FDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIME 244

Query: 287 ---QERGIRSGTLPTPLIVGFGSACEIAKKEMDY-DHKRITALHDRLLNGIKEKLDGVVV 342
                +G    T P  LI     A +   +E  +        + D   + +   L    V
Sbjct: 245 NYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTSV 304

Query: 343 NGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMA 402
           +          L  +    +   ++  LK   V                    G+ +D+ 
Sbjct: 305 SRYPSNMSAHGLT-AVYVADPPDVIAFLKSHGVVIAG----------------GIHKDIG 347

Query: 403 HTSIRFG-IGRFTTEAEVDRAIELTVKQVEKLR 434
              IR G +G       +             L+
Sbjct: 348 PKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ 380

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

 Score =  126 bits (317), Expect = 1e-32
 Identities = 45/410 (10%), Positives = 106/410 (25%), Gaps = 78/410 (19%)

Query: 98  ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHK 157
             E     A    A +  A   +  F  G + + N ++   +    D    V+  +  HK
Sbjct: 63  IHEGPAVAAEKHAARVYNA--DKTYFVLGGSSNANNTVTSALVSNGD---LVLFDRNNHK 117

Query: 158 CVLDSCRHLQQEGFEITYLPVGADGIVN-----------------LDELRAAIRPDTGLI 200
            V +S   +               G +                    +   A       +
Sbjct: 118 SVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRL 177

Query: 201 SVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDV-------------EKW 247
           +V+ +    G I    E+ +           D+A    +  + +              + 
Sbjct: 178 AVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPED 237

Query: 248 NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSA 307
              ++  S HK        +   ++   I+ +             +  + T       +A
Sbjct: 238 PGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA 297

Query: 308 CEIAKKEMDYDH----------------KRITALHDRLLNGIKEKLDG----------VV 341
            ++     + +                 K++          +   ++G          + 
Sbjct: 298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMA 357

Query: 342 VNGSMERRYIGNLNLSFAYVEGESLLM-------GLKEVAVSSGSACTS--ASLEPSYVL 392
            N    R   G    ++         +           +   +G        +   +  L
Sbjct: 358 NNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYL 417

Query: 393 RALGVDEDMA-HTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441
           R  G+  + +   SI F +    T A+++  I        +L ++  L E
Sbjct: 418 RDHGIIPEKSDLNSILFLMTPAETPAKMNNLI-------TQLLQLQRLIE 460

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} Length = 381

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

 Score =  121 bits (302), Expect = 4e-31
 Identities = 59/404 (14%), Positives = 125/404 (30%), Gaps = 57/404 (14%)

Query: 60  YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK 119
           Y +      +    L+A+   Y     N    +       +  +   R  +A+     P 
Sbjct: 10  YFNFGGQGILPTVALEAITAMYGYLQENGP-FSIAANQHIQQLIAQLRQALAETFNVDPN 68

Query: 120 EIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG 179
            I  T   T   ++ +         +   ++ T  EH  ++   + +             
Sbjct: 69  TITITDNVTTGCDIVL---WGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPV 125

Query: 180 ADGIVNLD---ELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQ- 235
           A  +   D    L   + P T L+ +  +    G + P+ EI  +C+  +  +       
Sbjct: 126 AATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD 185

Query: 236 ---ALGKIPVDVEKWNVSLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLING------- 284
              + G +P+D  +  V   + +GHK +    GVG LY+       + P   G       
Sbjct: 186 GAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWRSITYG 245

Query: 285 --------GGQERGIRSGTLPTPLIVGFGSACEIAKKE-MDYDHKRITALHDRLLNGIKE 335
                       +     T   P   G  +A ++ +++    +  +        L     
Sbjct: 246 AKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLN 305

Query: 336 KLDGVVVNGSMERRYIGNLNLSFAYVEG-ESLLMGLKEVAVSSGSACTSASLEPSYVLRA 394
           +L  V    +   +  G ++ +     G  +++  L+E  +                LR 
Sbjct: 306 QLPHVHCLATSAPQ-AGLVSFTVDSPLGHRAIVQKLEEQRI---------------YLRT 349

Query: 395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSP 438
           +   +      IR      T E E++  +        +L +  P
Sbjct: 350 IADPD-----CIRACCHYITDEEEINHLL-------ARLADFGP 381

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} Length = 450

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

 Score =  121 bits (304), Expect = 9e-31
 Identities = 58/420 (13%), Positives = 112/420 (26%), Gaps = 63/420 (15%)

Query: 56  GRP-LYLDMQATTPVDPRVLDAMLPFYLSRYGNPH---SRTHLFGWESEVAVETARSQIA 111
           G     L     T  D  V   M       + +         +   +         + +A
Sbjct: 52  GNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAI---DLRC-----VNMVA 103

Query: 112 DLIGASPKEI-----IFTSGATESNNVSI--------KGVMHFYKDKKRHVITTQTEHKC 158
           DL  A   +        T G++E+  +          K +    K   +  +       C
Sbjct: 104 DLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQIC 163

Query: 159 VLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPME- 216
                R+      E+  +P+      ++   +  A   +T  +         G  +  + 
Sbjct: 164 WHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQP 220

Query: 217 -----EIGQICKEFKIPFHTDAAQALGKIPVDVEK-------WNVSLMSLSGHKI-YGPK 263
                +  Q      I  H DAA      P              V  +S SGHK    P 
Sbjct: 221 LHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL 280

Query: 264 GVGALYMRRRPRIR----VEPLINGGGQERGIRSGT-LPTPLIVGFGSACEIAKKEMDYD 318
           G G +  R    +           GG       + +     +I  +     + ++     
Sbjct: 281 GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKV 340

Query: 319 HKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVA---V 375
                 +   L + I +      +     R   G   + F   +GE     L +++    
Sbjct: 341 QNASYQVAAYLADEIAKLGPYEFI--CTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLR 398

Query: 376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435
             G         P++ L     D  +    +R    R       +  +E     ++ L +
Sbjct: 399 LRGWQV------PAFTLGGEATDIVV----MRIMCRRGFEMDFAELLLEDYKASLKYLSD 448

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} Length = 340

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

 Score =  118 bits (295), Expect = 2e-30
 Identities = 44/362 (12%), Positives = 98/362 (27%), Gaps = 38/362 (10%)

Query: 66  TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTS 125
           +  + P++LD M            + T   G+  +     A   I +L+     ++ F S
Sbjct: 9   SVGMHPKILDLMAR---------DNMTQHAGYGQDSHCAKAARLIGELLERPDADVHFIS 59

Query: 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN 185
           G T++N ++    +  ++      +   + H+         +          +    I +
Sbjct: 60  GGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLRVADIES 119

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG---QICKEFKIPFHTDAAQALGKIPV 242
                 +       +  ++   E+G     +E+      CKE  +    D A+    +  
Sbjct: 120 ALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSS 179

Query: 243 DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIV 302
            V    ++ ++      Y               I  + L          R   +    ++
Sbjct: 180 PVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLL 239

Query: 303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE 362
           G      +              +   L  G++    G+ +            N  F  +E
Sbjct: 240 GIQFEVLMKDNLFFELGAHSNKMAAILKAGLEAC--GIRLAWP------SASNQLFPILE 291

Query: 363 GESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA 422
                                A L   + +  +          +R      T E E  R 
Sbjct: 292 NT-----------------MIAELNNDFDMYTVEPL-KDGTCIMRLCTSWATEEKECHRF 333

Query: 423 IE 424
           +E
Sbjct: 334 VE 335

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

 Score =  119 bits (297), Expect = 2e-30
 Identities = 53/398 (13%), Positives = 107/398 (26%), Gaps = 59/398 (14%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG 126
           +    RVL AM    LS +            E    ++  +  +  +     +  +  SG
Sbjct: 26  SNCSKRVLTAMTNTVLSNF----------HAELFRTMDEVKDGLRYIFQTENRATMCVSG 75

Query: 127 -ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN 185
            A       +  ++     +   V+                +      T           
Sbjct: 76  SAHAGMEAMLSNLLE----EGDRVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSL 131

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE 245
               RA        + +   ++  G++QP+E +GQIC +       DA  +L  +P  ++
Sbjct: 132 ETLARAIELHQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMD 191

Query: 246 KWNVSLMSLSGHKIYGPKGVGALYMRRRPRI-----------------RVEPLINGGGQE 288
           KW +  +     K+ G              +                  +     G   E
Sbjct: 192 KWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDE 251

Query: 289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER 348
                 T+ + LI     A     +E   +  +      ++L     K+   +       
Sbjct: 252 PKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRH 311

Query: 349 RYIGNLNLSF-AYVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404
           R      +     V+   +         + V  G   T                      
Sbjct: 312 RLPTVTGIMIPKGVDWWKVSQYAMNNFSLEVQGGLGPT-------------------FGK 352

Query: 405 SIRFG-IGRFTTEAEVDRAIELTVKQVEKLREMSPLYE 441
           + R G +G  +T  ++   +    K+   L+   P Y 
Sbjct: 353 AWRVGIMGECSTVQKIQFYLY-GFKES--LKATHPDYI 387

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

 Score =  118 bits (295), Expect = 5e-30
 Identities = 55/377 (14%), Positives = 111/377 (29%), Gaps = 52/377 (13%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTS 125
           +   P VL AM         N     H         ++  +S +  +    +P  I  + 
Sbjct: 27  SNAHPSVLQAM---------NVSPVGH-LDPAFLALMDEIQSLLRYVWQTENPLTIAVSG 76

Query: 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN 185
             T +   +I   +         V+     +          +      T      +    
Sbjct: 77  TGTAAMEATIANAVE----PGDVVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSL 132

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE 245
            +   A       +++++      G  QP+E +G++C+EF      D   +LG +P+ ++
Sbjct: 133 EELRTALETHRPAILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLD 192

Query: 246 KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG-----------QERGIRSG 294
            W V L      K  G     + +      I                     +  G    
Sbjct: 193 AWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERV 252

Query: 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD--GVVVNGSMERRYIG 352
              T  I  + +  E  +             H + +  + E+L+  G+ ++   E R   
Sbjct: 253 YHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPT 312

Query: 353 NLNLSF-AYVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRF 408
              +     V+G+++   L     + V  G                      +A    R 
Sbjct: 313 LTTVCIPDGVDGKAVARRLLNEHNIEVGGGLGE-------------------LAGKVWRV 353

Query: 409 G-IGRFTTEAEVDRAIE 424
           G +G  + +  VD+ I 
Sbjct: 354 GLMGFNSRKESVDQLIP 370

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  117 bits (294), Expect = 2e-29
 Identities = 54/440 (12%), Positives = 110/440 (25%), Gaps = 57/440 (12%)

Query: 54  IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWES-------EVAVETA 106
              R   L      P         +        N  S        +              
Sbjct: 21  REEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDL 80

Query: 107 RSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR--HVITTQTEHKCVLDSC- 163
           + +  +L       II       + N+    ++ + + + +  + +     H     +  
Sbjct: 81  KDKAKELFNY--DYIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV 138

Query: 164 -------RHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV----- 211
                   ++  E    +       G  ++ +L+  I        V  V+          
Sbjct: 139 ELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ 198

Query: 212 ---IQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK----WNVSL------------- 251
              +  ++E+ +I K+  I    D+A+          +     N ++             
Sbjct: 199 PVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADA 258

Query: 252 MSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA 311
           +++S  K       G + +R    I           E  +  G L    +       E  
Sbjct: 259 LTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEG 318

Query: 312 KKEM--DYDHKRITALHDRLLNGIKEKLDGVVVNGSM---ERRYIGNLNLSFAYVEGESL 366
            +E    Y   ++  L DRL             +      ++         F      + 
Sbjct: 319 TEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINA 378

Query: 367 LMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIEL 425
           L       + SG               A G  +      +R  I R   T   +D   + 
Sbjct: 379 LY------LESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADA 432

Query: 426 TVKQVEKLREMSPLYEMVKE 445
            +   EK   +  L E   E
Sbjct: 433 LIGLKEKFATLKGL-EFEYE 451

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} Length = 361

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

 Score =  114 bits (285), Expect = 6e-29
 Identities = 49/377 (12%), Positives = 97/377 (25%), Gaps = 52/377 (13%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE--IIFT 124
                 V +AML    +               +   VE  R Q+  L  AS     ++  
Sbjct: 9   LTTSRTVKEAMLFDSCTWD----------DDYNIGVVEQIRQQLTALATASEGYTSVLLQ 58

Query: 125 SGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIV 184
              + +    +   +       + +I +   +   +     L             A   V
Sbjct: 59  GSGSYAVEAVLGSALGPQ---DKVLIVSNGAYGARMVEMAGLMGIAHHAYDCGEVARPDV 115

Query: 185 NLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDV 244
              +      P    I+++      G++ P++E+G +   +   +  DA  + G IP+D+
Sbjct: 116 QAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIPMDI 175

Query: 245 EKWNVSLMSLSGHKIY-GPKGVGALYMRRRPRIRVE-----------PLINGGGQERGIR 292
              ++  +  S +K   G  G   +  R +     +                     G  
Sbjct: 176 AALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKW 235

Query: 293 SGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG 352
             T PT  ++ F  A +   KE     +      ++       +  G       E     
Sbjct: 236 RFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPI 295

Query: 353 NLNLSF---AYVEGESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIR 407
                               LKE    +  G                            R
Sbjct: 296 ITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS--------------------QSDCFR 335

Query: 408 FGIGRFTTEAEVDRAIE 424
            G       A++   + 
Sbjct: 336 IGNIGEVYAADITALLT 352

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  106 bits (265), Expect = 6e-26
 Identities = 42/391 (10%), Positives = 110/391 (28%), Gaps = 56/391 (14%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA-SPKEIIFTS 125
           + + PR++ A                 +   +    ++  +  I  +    +P  ++ + 
Sbjct: 28  SNLPPRIMAAG---------GLQMIGSM-SKDMYQIMDEIKEGIQYVFQTRNPLTLVISG 77

Query: 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN 185
               +   ++  V+          +                +                  
Sbjct: 78  SGHCALEAALVNVLE----PGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTL 133

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE 245
            +      +    L+ +    +  GV+QP++  G++C  +K     D+  +LG  P+ ++
Sbjct: 134 QEVEEGLAQHKPVLLFLTHGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMD 193

Query: 246 KWN-VSLMSLSGHKIYGPKGVGALYMRRRPR----------------IRVEPLINGGGQE 288
           +     L S S   +  P G   +    + +                I+      G   +
Sbjct: 194 RQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQ 253

Query: 289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER 348
             +   T+P   +     +  +  ++   +  R        L+G  + L   +       
Sbjct: 254 PRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQLFVKDPAL 313

Query: 349 RYIGNLNLSF-AYVEGESLLMGLKE---VAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404
           R      ++  A  +   ++  + +   + +  G   +                      
Sbjct: 314 RLPTVTTVAVPAGYDWRDIVSYVIDHFDIEIMGGLGPS-------------------TGK 354

Query: 405 SIRFG-IGRFTTEAEVDRAIELTVKQVEKLR 434
            +R G +G   T   VDR  E     ++   
Sbjct: 355 VLRIGLLGCNATRENVDRVTEALRAALQHCP 385

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (252), Expect = 7e-24
 Identities = 55/437 (12%), Positives = 107/437 (24%), Gaps = 48/437 (10%)

Query: 55  AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWES--EVAVETA-----R 107
           A R   +      P      D  +           +++         E    +       
Sbjct: 21  AYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALA 80

Query: 108 SQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR------------HVITTQTE 155
             + ++ G   +  I T     +  + I  ++   + +K                TTQ  
Sbjct: 81  ESVKNIFGY--QYTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGH 138

Query: 156 HKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT----GLISVMAVNNEIGV 211
            +    + R++  +    T +     G  +L+ L   I          I     +N  G 
Sbjct: 139 SQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGG 198

Query: 212 IQP----MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW-----------------NVS 250
                  ++ +  I K++ IP   D+A+         ++                     
Sbjct: 199 QPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYAD 258

Query: 251 LMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI 310
           ++++S  K       G L M+      V          +                 A  +
Sbjct: 259 MLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGL 318

Query: 311 AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL 370
                        A    L++G++E        G           L     +        
Sbjct: 319 YDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALA 378

Query: 371 KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIELTVKQ 429
            E+   +G                 G         +R  I R T T+  +D  IE     
Sbjct: 379 CELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438

Query: 430 VEKLREMSPLYEMVKEG 446
            E    +  L     E 
Sbjct: 439 KENAANIKGL-TFTYEP 454

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 98.7 bits (244), Expect = 2e-23
 Identities = 44/381 (11%), Positives = 93/381 (24%), Gaps = 55/381 (14%)

Query: 57  RPLYLDMQA--TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI 114
           RP  L   +       P V  A++          HS      + ++      + +  ++ 
Sbjct: 1   RPPALGFSSDNIAGASPEVAQALVK---------HSSGQAGPYGTDELTAQVKRKFCEIF 51

Query: 115 GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEIT 174
                E+      T +N + +  +   + +   H       H    +             
Sbjct: 52  ER-DVEVFLVPTGTAANALCLSAMTPPWGNIYCH----PASHINNDECGAPEFFSNGAKL 106

Query: 175 YLPVGADGIVNLDELRAAI--------RPDTGLISVMAVNNEIGVIQPMEEIG--QICKE 224
               G    +++  LR                 +S+        +    E      +CK 
Sbjct: 107 MTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKS 166

Query: 225 FKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLING 284
             +  H D ++    +                  +        +       +    L   
Sbjct: 167 SSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATE 226

Query: 285 GGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNG 344
               R            +       +       + ++  A   RL  G++  L GV V G
Sbjct: 227 MSYRRKRAGHLSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLG 285

Query: 345 SMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGV-DEDMAH 403
             E       N+ F  ++   ++  L +                       G   +    
Sbjct: 286 GTE------ANILFCRLDSA-MIDALLK--------------------AGFGFYHDRWGP 318

Query: 404 TSIRFGIGRFTTEAEVDRAIE 424
             +RF     TT  +VD  + 
Sbjct: 319 NVVRFVTSFATTAEDVDHLLN 339

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 99.3 bits (246), Expect = 4e-23
 Identities = 62/400 (15%), Positives = 115/400 (28%), Gaps = 26/400 (6%)

Query: 60  YLDMQATTPVDPRVLDAML--PFYLSRYGNPHS----RTHLFGWESEVAVETARSQIADL 113
           +L        + RV  A++    Y   +G   S            S +  +   S + ++
Sbjct: 44  FLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLNV 103

Query: 114 I----GASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQE 169
           I      S         AT  +       +   + K +++I  + + K    S      E
Sbjct: 104 IKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGFE 163

Query: 170 GFEITYLPVGADGIVNLDELRAAIRPDTG----LISVMAVNNEIGVIQPMEEIGQICKEF 225
              I  +  G +   +L  + A I+         +          V   +EE+  IC  +
Sbjct: 164 PVVIENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANY 223

Query: 226 KIPFHTDAAQALG------KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRV 278
            IP   + A  L        I        +     S  K    P G   +     P I+ 
Sbjct: 224 DIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQD 283

Query: 279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD 338
              +  G          L T L +G     ++ K+  +      T L   L     E+L 
Sbjct: 284 ISKMYPGRASASPSLDVLITLLSLGCSGYRKLLKERKEMFVYLSTQLKK-LAEAHNERLL 342

Query: 339 GVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEP--SYVLRALG 396
               N       +  ++          L   L    VS   A    +++    +  R   
Sbjct: 343 QTPHNPISLAMTLKTID-GHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFM 401

Query: 397 V-DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE 435
              ++     +           +VD  I+   K +  +R+
Sbjct: 402 SHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK 441

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 86.5 bits (213), Expect = 5e-19
 Identities = 43/320 (13%), Positives = 86/320 (26%), Gaps = 32/320 (10%)

Query: 118 PKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP 177
               I T  +T  +                 VI     HK  + +   +      +  + 
Sbjct: 129 NVHAIATPISTGMSISLCLSAARKKYGS-NVVIYPYASHKSPIKAVSFVGMNMRLVETVL 187

Query: 178 VGADGIVNLDELRAAIRPDTGL-----ISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTD 232
            G    V ++++  AI+ +  L     +              + EI +IC+ + IP   +
Sbjct: 188 DGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIIN 247

Query: 233 AAQAL-----GKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGG 286
            A A+      +      K+ V  +  S  K +  P G G +Y      I+         
Sbjct: 248 GAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEIS------ 301

Query: 287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKE--KLDGVVVNG 344
                      TP++    S   +  K      K        L   + +  K  G     
Sbjct: 302 --LSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKF-- 357

Query: 345 SMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHT 404
            ++        +S    +   +   L  + V +G      +                 H 
Sbjct: 358 -LDVESPIASCISVNS-DPVEIAAKLYNLRV-TGPRGIKKTDHFGNC-----YLGTYTHD 409

Query: 405 SIRFGIGRFTTEAEVDRAIE 424
            I           ++  ++ 
Sbjct: 410 YIVMNAAIGVRTEDIVNSVS 429

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 364

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 83.7 bits (205), Expect = 3e-18
 Identities = 49/379 (12%), Positives = 114/379 (30%), Gaps = 35/379 (9%)

Query: 64  QATTPVDPRVLDAMLPFYLSRYGNP--HSRTHLFGWESEVAVETARSQIADLIGASPKEI 121
           Q    +      A+L  +   Y      +   L   ++    +   +Q+   +G      
Sbjct: 9   QTGGKLTEEARQALLE-WGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC--DVA 65

Query: 122 IFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD 181
             T+GA E+    +  +      KK   +                      +       D
Sbjct: 66  RVTNGAREAKFAVMHSLA-----KKDAWVVMDENCHYSSYVAAERAGLNIALVPKTDYPD 120

Query: 182 GIVNLDELR-----AAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQA 236
             +  +           R +  L  +   +   G +  +++I ++C E+ +P   + A A
Sbjct: 121 YAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYA 180

Query: 237 LGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRV--EPLINGGGQERGIRSG 294
           +G++PV +++     +  SGHK     G   +   +     +          +E  +   
Sbjct: 181 IGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGC 240

Query: 295 TLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNL 354
           T     I+   ++    ++ +            R    +++   G+   G        N 
Sbjct: 241 TARGATIITLMASFPHVRERIK-RWDEEVEKARRFAAEMEKL--GIKQLG----DNPHNH 293

Query: 355 NLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF- 413
           +L F + E    +          G       L+         +       +  F +  + 
Sbjct: 294 DLMFFHAEVLYEIS----KKAKGGRFFLYRELKSR------KIHGIKPGLTRYFKLSTYG 343

Query: 414 TTEAEVDRAIELTVKQVEK 432
            ++ EVD  +    + +EK
Sbjct: 344 LSDEEVDYVLNAFKEIIEK 362

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 81.8 bits (201), Expect = 2e-17
 Identities = 51/367 (13%), Positives = 114/367 (31%), Gaps = 39/367 (10%)

Query: 110 IADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQ- 168
           + +L G   K I+ T     + N+  +  +   +    ++  T T      +    +   
Sbjct: 84  VKELFGF--KHIVPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIV 141

Query: 169 -EGFEITYLPVGADGIVNLDELRAAIRPDT----GLISVMAVNNEIGV----IQPMEEIG 219
            +      L +   G ++L++L   I+         I +    N  G     +  M  + 
Sbjct: 142 RDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVH 201

Query: 220 QICKEFKIPFHTDAAQALGKIPVDVEKWN-----------------VSLMSLSGHKIYGP 262
           ++   + I    DA + +       E+                       ++SG K    
Sbjct: 202 EMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLV 261

Query: 263 KGVGALYMRRR---PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDH 319
              G L M         +   ++  G    G  +G     + +G   A +    E  +  
Sbjct: 262 NIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIE--HRV 319

Query: 320 KRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAVSSGS 379
           K++  L D+L       ++    +           +L+      +SL      + + +G 
Sbjct: 320 KQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAA---SIYMETGV 376

Query: 380 ACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFT-TEAEVDRAIELTVKQVEKLREMSP 438
                 +  +   +  G +      ++R  I R   T A +D   +  + ++ + +E   
Sbjct: 377 RSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVAD-GIIKLYQHKEDIR 435

Query: 439 LYEMVKE 445
               V E
Sbjct: 436 GLTFVYE 442

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} Length = 360

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

 Score = 69.4 bits (168), Expect = 2e-13
 Identities = 37/379 (9%), Positives = 88/379 (23%), Gaps = 44/379 (11%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNP---HSRTHLFGWESEVAVETARSQIADLIGA-SPKEII 122
             +   VL           G        +H  G E     E A     DL+   S  +++
Sbjct: 10  AMLPAEVLKQAQQELRDWNGLGTSVMEVSHR-GKEFIQVAEEAEKDFRDLLNVPSNYKVL 68

Query: 123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG 182
           F  G            +       +              + +  ++      +       
Sbjct: 69  FCHGGGRGQF----AAVPLNILGDKTTADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVD 124

Query: 183 IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV 242
            +   +     +       +    NE      ++E      +  +    D +  +   P+
Sbjct: 125 GLRAVKPMREWQLSDNAAYMHYCPNETIDGIAIDETPDFGADVVV--AADFSSTILSRPI 182

Query: 243 DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGG----GQERGIRSGTLPT 298
           DV ++ V       +       +  +      +  +                + +     
Sbjct: 183 DVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTF 242

Query: 299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358
              +       +       +  +I      LL G+ +  D    + +   R   N+   F
Sbjct: 243 AWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNV--PF 300

Query: 359 AYVEG---ESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF 413
              +    +  L       +    G              R +G         +R  I   
Sbjct: 301 QLADSALDKLFLEESFAAGLHALKGH-------------RVVG--------GMRASIYNA 339

Query: 414 TTEAEVDRAIELTVKQVEK 432
                V    +  + + E+
Sbjct: 340 MPLEGVKALTDF-MVEFER 357

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.8 bits (157), Expect = 7e-12
 Identities = 57/431 (13%), Positives = 104/431 (24%), Gaps = 67/431 (15%)

Query: 49  LKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARS 108
           + GV     P +     T    P +L  ML   +         +                
Sbjct: 65  MPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAI----GCIGFSWAASPACTELETVMMD 120

Query: 109 QIADLIGASPKEI---------IFTSGATESNNVSIK---------------GVMHFYKD 144
            +  ++      +         +    A+E+  V++                G+      
Sbjct: 121 WLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVL 180

Query: 145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTG------ 198
           +K     +   H  V  +       G ++  +P      +    L+ A+  D        
Sbjct: 181 EKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQEALERDKAAGLIPF 237

Query: 199 LISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWN------VSLM 252
            +              + E+G IC E  I  H DAA A         +            
Sbjct: 238 FVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSF 297

Query: 253 SLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC---- 308
           + + HK        +    +R               +    G+        +        
Sbjct: 298 NFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRF 357

Query: 309 EIAKKEMDYDHKRITALHDRLLNGIK--EKL-DGVVVNGSMERRYIGNLNL-SFAYVEGE 364
              K    +    +  L   +   ++   +    V+ +   E      L L  F     +
Sbjct: 358 RSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEVTLGLVCFRLKGSD 417

Query: 365 SLLMGLKEVAVSSGSA-CTSASLEPSYVLRALGVDEDMAHTSIRFGIG-RFTTEAEVDRA 422
            L   L E   S+         L   +VLR              F I  R      V  A
Sbjct: 418 GLNEALLERINSARKIHLVPCRLRGQFVLR--------------FAICSRKVESGHVRLA 463

Query: 423 IELTVKQVEKL 433
            E       +L
Sbjct: 464 WEHIRGLAAEL 474

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 348

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (111), Expect = 2e-06
 Identities = 26/215 (12%), Positives = 56/215 (26%), Gaps = 21/215 (9%)

Query: 67  TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG 126
             + P+ L+A+    L                +      AR  + +      + +I T  
Sbjct: 9   VRLHPKALEALARPQLHHRTE----------AAREVFLKARGLLREAFRTEGEVLILTGS 58

Query: 127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNL 186
            T +       ++         V+               L+             D     
Sbjct: 59  GTLAME----ALVKNLFAPGERVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRP- 113

Query: 187 DELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIP--FHTDAAQALGKIPVDV 244
                  +     + ++      G +  +  + +  KE         D   +L    V +
Sbjct: 114 ---EDVAKEGYAGLLLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVAL 170

Query: 245 EKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRV 278
           E   V   +    K +  P G+G + +  R   R+
Sbjct: 171 EAMGVDAAASGSQKGLMCPPGLGFVALSPRALERL 205

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.9 bits (107), Expect = 6e-06
 Identities = 47/379 (12%), Positives = 93/379 (24%), Gaps = 53/379 (13%)

Query: 67  TPVDPRVLDAML--PFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFT 124
           T     +  AM         YG   +            +       A+  G   +  +F 
Sbjct: 10  TKPTEEMRKAMAQAEVGDDVYGEDPT------------INELERLAAETFGK--EAALFV 55

Query: 125 SGATESNNVSIK------GVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV 178
              T  N VSI         +    D                     +  +   +     
Sbjct: 56  PSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD-PDD 114

Query: 179 GADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALG 238
               I   +             +       +  ++ ++EI  I KE  I  H D A+   
Sbjct: 115 VRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFN 174

Query: 239 KIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPT 298
                                   KG+ A        +     I    + R +  G +  
Sbjct: 175 ASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVV--VGDRDFIERARKARKMLGGGMRQ 232

Query: 299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF 358
               G  +A  I       D  +    + R L    +++   V    ++   +  L    
Sbjct: 233 A---GVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVI-LRTDN 288

Query: 359 AYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAE 418
             V     +  L+   V                         ++ T IR    +  +  +
Sbjct: 289 LKVNAHGFIEALRNSGV--------------LAN-------AVSDTEIRLVTHKDVSRND 327

Query: 419 VDRAIELTVKQVEKLREMS 437
           ++ A+    +++   R+ S
Sbjct: 328 IEEALN-IFEKL--FRKFS 343

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} Length = 368

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

 Score = 45.5 bits (106), Expect = 7e-06
 Identities = 61/364 (16%), Positives = 112/364 (30%), Gaps = 46/364 (12%)

Query: 68  PVDPRVLDAMLPFY--LSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTS 125
           P  P +L+A+        +Y  P     L            R  +A+     P+ ++ TS
Sbjct: 38  PPPPFLLEAVRRALGRQDQYAPPAGLPAL------------REALAEEFAVEPESVVVTS 85

Query: 126 GATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVN 185
           GATE+    +  ++         V+  +      L        +   +          ++
Sbjct: 86  GATEA----LYVLLQSLVGPGDEVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLD 141

Query: 186 LDELRAAIRPDTGLISVMAVNNEIGVIQPMEE---IGQICKEFKIPFHTDAAQALGKIPV 242
           L  L  A+ P T  + +    N  G++    E   I ++ +   +   +D          
Sbjct: 142 LSALEKALTPRTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGE 201

Query: 243 DVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIV 302
              +        +       K + A   R    +  +  +      R   S + PTPL  
Sbjct: 202 RPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQA 261

Query: 303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVE 362
           G   A ++A++E  Y+  R      R L     +  G+ V       ++       A + 
Sbjct: 262 GVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVYVPEGTYFL------MAELP 315

Query: 363 GESLLMGLKE--VAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD 420
           G      ++E  VA+   SA                          RF      TE E+ 
Sbjct: 316 GWDAFRLVEEARVALIPASAFYLEDPPKDL---------------FRFAFC--KTEEELH 358

Query: 421 RAIE 424
            A+E
Sbjct: 359 LALE 362

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} Length = 392

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 58/362 (16%), Positives = 105/362 (29%), Gaps = 69/362 (19%)

Query: 80  FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM 139
            + SR  NP              +E     +A L G   +  +  +    +   ++  ++
Sbjct: 51  HFYSRISNPTLN----------LLEAR---MASLEGG--EAGLALASGMGAITSTLWTLL 95

Query: 140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGL 199
                    V+   T + C      H   E          AD       L AA+ P T +
Sbjct: 96  R----PGDEVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMADL----QALEAAMTPATRV 147

Query: 200 ISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI 259
           I   +  N    +  +  + +I ++       D       +     +    L+  S  K 
Sbjct: 148 IYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-QRPLELGADLVVHSATKY 206

Query: 260 YGPKG-----VGALYMRRRPRIRVEPLINGGGQ----------ERGIRSGTLPTPLIVGF 304
               G     +         RIR++ L +  G            RGI+  TL   +    
Sbjct: 207 LSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIK--TLNLRMDRHC 264

Query: 305 GSACEIAKKEMD--------YDHKRITALHDRLLNGIKEK--LDGVVVNGSME--RRYIG 352
            +A  +A+            Y        +      + +   +    + G +   RR++ 
Sbjct: 265 ANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMN 324

Query: 353 NLNL-SFAYVEG--ESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG 409
            L L S A   G  ESL             A  + S          G+ E +    +R  
Sbjct: 325 ALQLFSRAVSLGDAESLA---------QHPASMTHSSYTPEERAHYGISEGL----VRLS 371

Query: 410 IG 411
           +G
Sbjct: 372 VG 373

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	457
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	100.0
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	100.0
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	100.0
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	100.0
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	100.0
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	100.0
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	100.0
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	100.0
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	100.0
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	100.0
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	100.0
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	100.0
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	100.0
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.97
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.97
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.97
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.96
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.96
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.96
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.96
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.95
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.95
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.95
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.95
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.95
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.95
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.94
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.94
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.94
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.94
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.94
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.94
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.94
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.94
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.94
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.94
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.93
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.93
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.93
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.93
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.93
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.93
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.93
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.92
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.92
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.92
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.9
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.9
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.9
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.9
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.9
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.9
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.89
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.89
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.89
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.88
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.88
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.88
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.87
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.87
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	99.86
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.86
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.86
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.86
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.86
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.85
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.84
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.84
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.84
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.84
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.83
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	99.82
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.82
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.82
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	99.81
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	99.81
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.8
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.78
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.78
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	99.77
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	99.74
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	99.73
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.69
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	99.67

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-55  Score=430.36  Aligned_cols=387  Identities=59%  Similarity=1.018  Sum_probs=351.8

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHh--hccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYL--SRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      +||||+++++|++++|+++|.+++.  ..++||++..|..++...+.++++|+.+|+++|+++++|+|++|+|++++.++
T Consensus         3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~   82 (391)
T d1p3wa_           3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAI   82 (391)
T ss_dssp             SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHH
T ss_pred             eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHH
Confidence            6999999999999999999999885  35789999899999998899999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccCh
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l  215 (457)
                      .++.....++|++|++++.+|+++...++.++..|++++.++.+.++.+|+++++++++++|++|++++++|++|.+.|+
T Consensus        83 ~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~~~T~lv~is~~~n~tG~~~~~  162 (391)
T d1p3wa_          83 KGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVVQDI  162 (391)
T ss_dssp             HHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCCTTEEEEECCSBCTTTCCBCCH
T ss_pred             hhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCCCCcEEEEEECCCCCCeeECCH
Confidence            88765444899999999999999998888888889999999999889999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          216 EEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      ++|.++||++|+++++|++|++|..++++...++|++++|++|++||.|+|+++++++......+...||..+.+...++
T Consensus       163 ~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~~~D~~~~s~~k~~g~~g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~  242 (391)
T d1p3wa_         163 AAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGT  242 (391)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTBTTBCCCTTTSCCSEEEEESTTTTSCSSCEEEEECBTTBCCCCCSSCSSCTTTTTSCSC
T ss_pred             HHHHHHhccCCcEEEEeeccccCCccccchhccccccccccccccCCCceEEEEEecchhcccCCcccCCccccCcccCc
Confidence            99999999999999999999999999999999999999999999999999999999998888888888888888888899


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAV  375 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  375 (457)
                      .+.+...++..++....+......++.+++..++.+.|.+ +++..+......+.+..+.+.+++.....+...|+++.+
T Consensus       243 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~v  321 (391)
T d1p3wa_         243 LPVHQIVGMGEAYRIAKEEMATEMERLRGLRNRLWNGIKD-IEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAV  321 (391)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-STTEEECSCTTTSCTTEEEEEETTSCHHHHHHHTTTEEC
T ss_pred             chhhhhhhhhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHh-hcCeeecccccccCceEEEEEeCCCChHHHHHHhCCCEE
Confidence            9999999888888777766677778888999999999998 888888776667778888889998888999999999999


Q ss_pred             cccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHhcChhHHHHHh
Q 040741          376 SSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLREMSPLYEMVKE  445 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~~~~~~~~~~~  445 (457)
                      +.|.+|.++..+++++++++|++.....+.|||+++.++|+||||+++++|+++++++|+|+|+|||-++
T Consensus       322 ~~G~~c~~~~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~~~  391 (391)
T d1p3wa_         322 SSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ  391 (391)
T ss_dssp             BCCCC------CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHHCC
T ss_pred             EccccccCCccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHhhcC
Confidence            9999999999999999999999887777899999999999999999999999999999999999999764

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-48  Score=386.17  Aligned_cols=365  Identities=24%  Similarity=0.371  Sum_probs=323.5

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESNNV  133 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~~~  133 (457)
                      .++++|||+++++++|+.|++++.+++++.++||+++.|..+....+.++++|+.+++++|+. +++++|++|+|+|++.
T Consensus        20 ~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~   99 (405)
T d1jf9a_          20 GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINL   99 (405)
T ss_dssp             TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHH
T ss_pred             CCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcccccccCcHHHHHHH
Confidence            456799999999999999999999999999999998888888888899999999999999975 5789999999999999


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      ++.++......+|++|+++..+|++...+++.+ ++.|++++++|++.+|.+|++.++++++++|++|++++++|.+|.+
T Consensus       100 ~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~~~~g~~~~~~~~~~i~~~t~lv~~~~v~~~tG~~  179 (405)
T d1jf9a_         100 VANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTE  179 (405)
T ss_dssp             HHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTCEEEEECBCTTSCBCGGGHHHHCCTTEEEEEEESBCTTTCCB
T ss_pred             HHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCcEEEEECCCCCCcCCHHHHHHhccCCcEEEEEecCCCccccc
Confidence            988766444488999999999999999998866 6679999999999999999999999999999999999999999999


Q ss_pred             cChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc------
Q 040741          213 QPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG------  286 (457)
Q Consensus       213 ~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~------  286 (457)
                      .|+++|.++||++|+++++|++|+.|..++++..+++|++++|+||++||.|+|+++++++...++.+...++.      
T Consensus       180 ~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~~~D~~~~s~hK~~Gp~G~g~l~v~~~~~~~~~~~~~~~~~~~~~~  259 (405)
T d1jf9a_         180 NPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCDFYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVS  259 (405)
T ss_dssp             CCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCSSCEEEEECHHHHTTCCCSSCSSSSEEECC
T ss_pred             CchHHhhhHHHHcCCeeecccceeccccccchhhcCCceeeccccccccCCCceeeeechhhhcccCcccccccccCccc
Confidence            99999999999999999999999999999999999999999999999999999999999987666655443321      


Q ss_pred             ---------cccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          287 ---------QERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       287 ---------~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                               ...+++.||++...++++..|+++..+ +++.+.++...+.+++.+.++. ++...+.++..  ..+.+.+
T Consensus       260 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~L~~~~~~~l~~-~~~~~~~~~~~--r~~ivsf  336 (405)
T d1jf9a_         260 LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLES-VPDLTLYGPQN--RLGVIAF  336 (405)
T ss_dssp             TTTCCEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-STTEEEESCTT--CCSEEEE
T ss_pred             cccccccccchhhhcCCCCcHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhhhhc-CCcccccCCcC--cCcEEEE
Confidence                     234567899999999999999998877 6899999999999999999999 88888877533  3567788


Q ss_pred             EEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       357 ~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .+++.++.++...|  +||.++.|++|+.      .++..++.+     +.||||++.++|.+|||+++++|+++.+.+
T Consensus       337 ~~~~~~~~~~~~~L~~~gI~v~~G~~c~~------~~~~~~~~~-----g~iRiS~~~ynt~eDid~l~~~l~~i~r~~  404 (405)
T d1jf9a_         337 NLGKHHAYDVGSFLDNYGIAVRTGHHCAM------PLMAYYNVP-----AMCRASLAMYNTHEEVDRLVTGLQRIHRLL  404 (405)
T ss_dssp             EETTCCHHHHHHHHHHTTEECEEECTTCH------HHHHHTTCS-----CEEEEECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EcCCCCHHHHHHHHHHCCcEEEccchhhh------hHHHhcCCC-----CEEEEECCCCCCHHHHHHHHHHHHHHHHhc
Confidence            88888887777666  7999999999964      466677665     799999999999999999999999988765

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=100.00  E-value=1.6e-47  Score=379.62  Aligned_cols=368  Identities=23%  Similarity=0.354  Sum_probs=322.7

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCChHHHH
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSGATESN  131 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g~T~a~  131 (457)
                      .+..+++|||+++++++|+.|+++|.+++++.++||+++.|..+....+.++++|+.+++++|++ ++.++|++++|+++
T Consensus        18 ~~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~   97 (408)
T d1t3ia_          18 INGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAI   97 (408)
T ss_dssp             ETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHH
T ss_pred             cCCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecchHHHH
Confidence            34566799999999999999999999999999999998889999998899999999999999997 46799999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      ++++.++.....++|++|+++..+|++...+++. .+..|.++..++.+.++..|.+.++++++++|++|++++++|.+|
T Consensus        98 n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~l~~~~~~~t~lv~i~~~~~~tG  177 (408)
T d1t3ia_          98 NLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTLG  177 (408)
T ss_dssp             HHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCCEEEEECBCTTSSBCHHHHHHHCCTTEEEEEEESBCTTTC
T ss_pred             HHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCceEeeeeccccccccHHHhhhccCCCceEEEEeccccccc
Confidence            9988875443337899999999999999998875 466799999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc---
Q 040741          211 VIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ---  287 (457)
Q Consensus       211 ~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~---  287 (457)
                      .+.|+++|.++|+++|+++++|++|++|..++++..+++|++++|+||++||.|+|+++++++...+..+...||..   
T Consensus       178 ~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~~~D~~~~s~hK~~gp~G~g~l~v~~~~~~~~~p~~~g~~~~~~  257 (408)
T d1t3ia_         178 CVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLIDCDWLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAE  257 (408)
T ss_dssp             BBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHHTCSEEEEEGGGTTSCTTCEEEEECHHHHHHSCCCSCSTTSEEE
T ss_pred             ccCcHHHHhhhhhccCceeeeccceecccccccccccCCceEEeccccccCCCCccccccchhhhhcCCceecCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999876666666655432   


Q ss_pred             -----------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--Ccccce
Q 040741          288 -----------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--RRYIGN  353 (457)
Q Consensus       288 -----------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~  353 (457)
                                 ..+++.||++++.++++..+++++.+ +++++.++..++.+++.+.+.+ .+++.++++..  ....++
T Consensus       258 ~~~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~i  336 (408)
T d1t3ia_         258 VFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ-IPQLRLYGPNPKHGDRAAL  336 (408)
T ss_dssp             ECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-CTTEEEESCCGGGSCBCSE
T ss_pred             ccccccccCCchhhhcCCcHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc-CccccccCCCccccCcceE
Confidence                       24678899999999999999999876 6899999999999999999999 89999987543  345678


Q ss_pred             EEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          354 LNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       354 ~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      +.|.+++.++.++...|  +||.++.|.+|+.    |.  ++.++..     +.||||++.++|++|||+++++|+++++
T Consensus       337 v~f~~~~~~~~~v~~~L~~~gI~v~~G~~c~~----~~--~~~~~~~-----g~vRiS~~~ynt~~did~li~~L~~~~~  405 (408)
T d1t3ia_         337 ASFNVAGLHASDVATMVDQDGIAIRSGHHCTQ----PL--HRLFDAS-----GSARASLYFYNTKEEIDLFLQSLQATIR  405 (408)
T ss_dssp             EEEEETTBCHHHHHHHHHTTTEECBCSCTTCH----HH--HHHTTCC-----CCEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHhhCCcEEecCccccc----HH--HHhhcCC-----ccEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            88899988888887777  7999999999974    22  3333332     7899999999999999999999999987


Q ss_pred             H
Q 040741          432 K  432 (457)
Q Consensus       432 ~  432 (457)
                      .
T Consensus       406 ~  406 (408)
T d1t3ia_         406 F  406 (408)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=1.3e-45  Score=362.20  Aligned_cols=370  Identities=42%  Similarity=0.675  Sum_probs=317.9

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      .||||+++++++|+.|++++.+++++.++||++ .|..+....+.++++|+.+++++|+++++++|++|+|++++.++.+
T Consensus         2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~-~~~~~~~~~~~~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~   80 (376)
T d1eg5a_           2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKT   80 (376)
T ss_dssp             CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHH
T ss_pred             EEEEECcccccCCHHHHHHHHHHHHHcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhc
Confidence            389999999999999999999999999999986 6667778888999999999999999999999999999999999887


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +......+|+.|++...+|++.....+.++..|++++.+|++.++.+|+++++++|+++|++|+++++++++|.+.|+++
T Consensus        81 ~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~~~t~lv~is~v~~~tG~~~~~~~  160 (376)
T d1eg5a_          81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDEDTFLVSIMAANNEVGTIQPVED  160 (376)
T ss_dssp             HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCTTEEEEEEESBCTTTCBBCCHHH
T ss_pred             ccccccccCcccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcCCCceEEEEECCccccceeeeehh
Confidence            65555578999999999999999988888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCC
Q 040741          218 IGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGT  295 (457)
Q Consensus       218 i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t  295 (457)
                      +.++++.+  ++++++|++|++|..++++..+++|++++|+||++||+|.|+++++++  ..++|...+++....+..++
T Consensus       161 i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~~~D~~~~s~~K~~gp~G~~~l~~~~~--~~~~p~~~g~~~~~~~~~~~  238 (376)
T d1eg5a_         161 VTRIVKKKNKETLVHVDAVQTIGKIPFSLEKLEVDYASFSAHKFHGPKGVGITYIRKG--VPIRPLIHGGGQERGLRSGT  238 (376)
T ss_dssp             HHHHHHHHCTTCEEEEECTTTTTTSCCCCTTTCCSEEEEEGGGGTSCTTCEEEEECTT--SCCCCSBCSSCTTTTTBCSC
T ss_pred             hhhhhhhcccCceeEEEeeeccccccccccccCccceecccceeecCCCceeEEeccC--cccCCcccCCCCcccccCCc
Confidence            99998665  999999999999999999999999999999999999999999999876  35678888888777888889


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEV  373 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i  373 (457)
                      .+.........+....................++.+.|.. . ...+...........+.+.+++.++..+...|  +||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI  316 (376)
T d1eg5a_         239 QNVPGIVGAARAMEIAVEELSEAAKHMEKLRSKLVSGLMN-L-GAHIITPLEISLPNTLSVSFPNIRGSTLQNLLSGYGI  316 (376)
T ss_dssp             CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-T-TCEECSCTTSBCTTEEEEECTTCCHHHHHHHHHHTTE
T ss_pred             ccchhhhhHHHHhhccccchhhhhhhhhhhhhhhcccccc-c-cccccccccccccceeeeccCCCCHHHHHHHHhhCCe
Confidence            9988888887777776666677777788888889999888 4 44445555566677788888888888887777  799


Q ss_pred             EecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          374 AVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       374 ~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .++.|.+|.++..+++.++.++|++.....+.|||+++.++|+||||+++++|+++++-
T Consensus       317 ~vr~G~~c~~~~~~~~~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~~  375 (376)
T d1eg5a_         317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILSF  375 (376)
T ss_dssp             ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCcchhcCCccchhHHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence            99999999998889999999999987777789999999999999999999999999873

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=100.00  E-value=2.1e-40  Score=325.53  Aligned_cols=347  Identities=18%  Similarity=0.284  Sum_probs=286.4

Q ss_pred             CCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHH
Q 040741           55 AGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVS  134 (457)
Q Consensus        55 ~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~a  134 (457)
                      ..+.+|||+++.+++|+.|+++|.+++.....++.. .+..+....+.+.++|+.+++++|+++++++||+|+|+|++++
T Consensus         5 l~~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~   83 (381)
T d1elua_           5 LANKTYFNFGGQGILPTVALEAITAMYGYLQENGPF-SIAANQHIQQLIAQLRQALAETFNVDPNTITITDNVTTGCDIV   83 (381)
T ss_dssp             GTTSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHH
T ss_pred             CCCCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCc-cchhhHHHHHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhc
Confidence            356799999999999999999999998766555443 3344455567888999999999999999999999999999999


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCcEEEEEeCCCCCCC--CHHHHHHhcCCCceEEEEecccccccc
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGFEITYLPVGADGIV--NLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~~v~~v~~~~~~~~--d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      +.++..   ++|++|++++.+|+++..+++.+ +..|+++..++.+.+...  +.+.++++++++|+++++++++|++|.
T Consensus        84 ~~~l~~---~~g~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~~~t~~v~i~~~~n~tG~  160 (381)
T d1elua_          84 LWGLDW---HQGDEILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLGPKTRLVILSHLLWNTGQ  160 (381)
T ss_dssp             HHHSCC---CTTCEEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCCTTEEEEEEESBCTTTCC
T ss_pred             chhhhh---cCCceEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhcccccccccccccccccc
Confidence            998854   79999999999999998887754 456999999998744332  357788999999999999999999999


Q ss_pred             ccChHHHHHHHHhc----CCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccccCCc
Q 040741          212 IQPMEEIGQICKEF----KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       212 ~~~l~~i~~l~~~~----~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      +.|+++|.++||++    ++++++|++|++|..++++...++|++++|+||+ +||.|+|+++++++..+++.+...++.
T Consensus       161 ~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~~~D~~~~s~~K~~~~p~G~g~l~~~~~~~~~~~p~~~~~~  240 (381)
T d1elua_         161 VLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTYVGWR  240 (381)
T ss_dssp             BCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCSCCTT
T ss_pred             cchhhHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccchhhHHHhhHHHHHhcCccccccc
Confidence            99999999999985    6999999999999999999999999999999995 568899999999998888877766543


Q ss_pred             c---------------ccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          287 Q---------------ERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       287 ~---------------~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                      .               ...+..|+++...+.++.+|++.....  .+.+.++..++++++.+.|++ ++++.++++...+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~~~~~~  319 (381)
T d1elua_         241 SITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQ-LPHVHCLATSAPQ  319 (381)
T ss_dssp             TEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH-STTEEESCSSCCS
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhc-CCCeEecCCCCcc
Confidence            1               123467899999999999999988763  456678899999999999999 9999999765443


Q ss_pred             ccceEEEEEcccc-chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHH
Q 040741          350 YIGNLNLSFAYVE-GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELT  426 (457)
Q Consensus       350 ~~~~~~~~~~~~~-~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l  426 (457)
                       .+++.|.+.+.. .+.+...|  +||.++...                      ..++|||+++.++|.||||+++++|
T Consensus       320 -~~~vsf~~~~~~~~~~i~~~L~~~gi~v~~~~----------------------~~~~lRis~~~~nt~edid~ll~~l  376 (381)
T d1elua_         320 -AGLVSFTVDSPLGHRAIVQKLEEQRIYLRTIA----------------------DPDCIRACCHYITDEEEINHLLARL  376 (381)
T ss_dssp             -SSEEEEEECSSSCHHHHHHHHHHTTEECEEET----------------------TTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred             -ccEEEEEcCCCCCHHHHHHHHHhCCcEEEecC----------------------CCCEEEEecCCCCCHHHHHHHHHHH
Confidence             566777776543 35566666  688764311                      1279999999999999999999998


Q ss_pred             HHH
Q 040741          427 VKQ  429 (457)
Q Consensus       427 ~~~  429 (457)
                      ++.
T Consensus       377 ~e~  379 (381)
T d1elua_         377 ADF  379 (381)
T ss_dssp             TTC
T ss_pred             Hhh
Confidence            763

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=100.00  E-value=7.2e-36  Score=295.23  Aligned_cols=355  Identities=17%  Similarity=0.154  Sum_probs=266.0

Q ss_pred             eecccccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           48 TLKGVRIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        48 ~~~~~~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      .++.++...+.+|||+++.+++|..|.+++.+++.+.++++... +.....+.+.++++|+++++++|+++++++||+++
T Consensus        18 ~R~~F~~~~~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~e~~R~~iA~llga~~~ei~~~~~~   96 (404)
T d1qz9a_          18 LRQQFALPEGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATLIGARDGEVVVTDTT   96 (404)
T ss_dssp             GGGGBCCCTTCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTTTTCCTTSEEECSCH
T ss_pred             HHhcCCCCCCCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcc-cccchhHHHHHHHHHHHHHHHhCCCCCcEEEecCc
Confidence            34556666789999999999999999999999998877776542 22233334678899999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhh--cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecc
Q 040741          128 TESNNVSIKGVMHFY--KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAV  205 (457)
Q Consensus       128 T~a~~~al~~~~~~~--~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~  205 (457)
                      |++++.++.......  ..+++.+++++..|++........   +.++..++.+.++..++++++++|+++|++|+++++
T Consensus        97 T~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~T~lV~i~~v  173 (404)
T d1qz9a_          97 SINLFKVLSAALRVQATRSPERRVIVTETSNFPTDLYIAEG---LADMLQQGYTLRLVDSPEELPQAIDQDTAVVMLTHV  173 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHH---HHHHHCSSCEEEEESSGGGHHHHCSTTEEEEEEESB
T ss_pred             hHHHHHHhhhhhhhhcccCCCcEEEEeccccchHHHHHHhh---hheeeeeceeccccccchhHHHhcCCCceEEEEecc
Confidence            999998776543221  157788888777777665544432   333344444445667889999999999999999999


Q ss_pred             ccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCC-CceEEEEecCCCcccccccc
Q 040741          206 NNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPK-GVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       206 ~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~-G~G~l~~~~~~~~~~~~~~~  283 (457)
                      +|.+|.+.|+++|+++|+++++++++|++|++|..++++.++++|++++|+||+ ++|+ |+|+++.+++....+.+...
T Consensus       174 ~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~  253 (404)
T d1qz9a_         174 NYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLS  253 (404)
T ss_dssp             CTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCC
T ss_pred             cccccceecHHHHhccccccccceeEEeeccccccccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCcccc
Confidence            999999999999999999999999999999999999999999999999999994 4555 47899988877666554333


Q ss_pred             CCcc----------------ccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHH---HHHHHhhcCCCeEEe
Q 040741          284 GGGQ----------------ERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDR---LLNGIKEKLDGVVVN  343 (457)
Q Consensus       284 ~~~~----------------~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~  343 (457)
                      +++.                ...+..++++......+..++....+ +...+.++...+.+.   +...+.. .++++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~-~~~~~i~  332 (404)
T d1qz9a_         254 GWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCA-AHELTLV  332 (404)
T ss_dssp             CGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHT-TSCCEEC
T ss_pred             ccCCccccccccccccccccchhhhhhhccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhcc-CCCEEEE
Confidence            2211                23456678888888888777776654 344444444444444   4444555 6899998


Q ss_pred             CCCCC-cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC-CCCCHHHH
Q 040741          344 GSMER-RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG-RFTTEAEV  419 (457)
Q Consensus       344 ~~~~~-~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~-~~~t~edi  419 (457)
                      ++.+. ...+.+.|.+  .++.++...|  +||.+.   .|.                    .+.|||+++ .++|.+||
T Consensus       333 ~p~~~~~r~~~vsf~~--~~~~~v~~~L~~~gi~~~---~r~--------------------~~~lRiS~~h~ynt~~di  387 (404)
T d1qz9a_         333 TPREHAKRGSHVSFEH--PEGYAVIQALIDRGVIGD---YRE--------------------PRIMRFGFTPLYTTFTEV  387 (404)
T ss_dssp             SCSSGGGBCSEEEEEC--TTHHHHHHHHHTTTEECE---EET--------------------TTEEEEECCTTTCCHHHH
T ss_pred             CCCCccceeeEEEEec--CCHHHHHHHHHHCCCEEe---ecC--------------------CCeEEEECCCCCCCHHHH
Confidence            76543 3345554444  4577777777  576542   121                    278999996 58999999


Q ss_pred             HHHHHHHHHHHHH
Q 040741          420 DRAIELTVKQVEK  432 (457)
Q Consensus       420 d~~~~~l~~~~~~  432 (457)
                      |+++++|++++++
T Consensus       388 d~~~~~L~~vl~~  400 (404)
T d1qz9a_         388 WDAVQILGEILDR  400 (404)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999875

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=292.26  Aligned_cols=341  Identities=11%  Similarity=0.192  Sum_probs=275.0

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al~~~  138 (457)
                      .|-.+|+++++++|+++|.....         .| .+..+.+.++++++.|++++|++.+ .++|++|||+++++++.++
T Consensus        21 ~l~~pGP~~~~~~Vl~am~~~~i---------~H-Rs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l   90 (388)
T d1h0ca_          21 LLLGPGPSNLPPRIMAAGGLQMI---------GS-MSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV   90 (388)
T ss_dssp             EECSSSCCCCCHHHHHHHTCCCC---------CT-TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH
T ss_pred             ccccCCCCCCCHHHHHHhCcCCC---------CC-CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh
Confidence            56677899999999999853321         12 3557779999999999999999744 6999999999999999999


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccChHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      .    .+++++++....|.+.... ......+..+..++.+..+.+|.+++++.+ +.+++++++++.+|.+|.+.|+++
T Consensus        91 ~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~n~tG~i~pi~~  165 (388)
T d1h0ca_          91 L----EPGDSFLVGANGIWGQRAV-DIGERIGARVHPMTKDPGGHYTLQEVEEGLAQHKPVLLFLTHGESSTGVLQPLDG  165 (388)
T ss_dssp             C----CSSCCEEECBSSHHHHHHH-HHHHHHC--CBCCBCCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred             h----ccCCceeeecccceeeeec-cccccccccccccccCCccccchHHHHHHhccCCcceEEEeeeeeccccccCHHH
Confidence            8    8999999988888776543 444556788888888878888998887765 458899999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccC------------
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING------------  284 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~------------  284 (457)
                      |.++|+++|+++++|++|++|..++++..+++|++++|.|| ++||.|+|+++++++.++.+.+...+            
T Consensus       166 i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~~~D~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (388)
T d1h0ca_         166 FGELCHRYKCLLLVDSVASLGGTPLYMDRQGIDILYSGSQKALNAPPGTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLA  245 (388)
T ss_dssp             HHHHHHTTTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCTTCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHH
T ss_pred             HHHHhhcccccceeccccccccccccccccccceecccccccccCCCceEEEeecHHHHHhhhhccccccccccccchhh
Confidence            99999999999999999999999999999999999999999 55788899999988655444322111            


Q ss_pred             ----CccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          285 ----GGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       285 ----~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                          .....+.+.++++...+.++..+++.+.+ +++.+.++..++.+++++.+.. .....+..++..+.+.++.+.++
T Consensus       246 ~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~-~g~~~~~~~~~~rs~~i~~~~~p  324 (388)
T d1h0ca_         246 NFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQA-LGLQLFVKDPALRLPTVTTVAVP  324 (388)
T ss_dssp             HHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTTEEEEECC
T ss_pred             hhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhh-cCcccccCCHHHcCCeEEEEECC
Confidence                11223456789999999999999988876 5899999999999999999988 43333344555666777788884


Q ss_pred             -cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          360 -YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       360 -~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                       +.+..++...|   .||.+..|..|..                   ++.|||+ ++.++|.||||+++++|++++++++
T Consensus       325 ~~~~~~~~~~~L~~~~gI~v~~G~~~~~-------------------~~~iRis~~g~~~t~edid~li~aL~~~L~~l~  385 (388)
T d1h0ca_         325 AGYDWRDIVSYVIDHFDIEIMGGLGPST-------------------GKVLRIGLLGCNATRENVDRVTEALRAALQHCP  385 (388)
T ss_dssp             TTCCHHHHHHHHHHHHCEECEECCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHhcCCEEEeCCchhhc-------------------CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence             56777887776   3899988876533                   2789999 6788999999999999999999886


Q ss_pred             h
Q 040741          435 E  435 (457)
Q Consensus       435 ~  435 (457)
                      +
T Consensus       386 k  386 (388)
T d1h0ca_         386 K  386 (388)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.1e-33  Score=275.12  Aligned_cols=330  Identities=16%  Similarity=0.164  Sum_probs=250.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc--EEEeCChHHHHHHHHHHhhh
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE--IIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~--i~~t~g~T~a~~~al~~~~~  140 (457)
                      .+|+.+++++|++||.....          +..+..+.+.++++++++++++|+++++  ++|++|||+++++++.++. 
T Consensus         5 ~pGP~~~~~~V~~A~~~~~~----------~~~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l~-   73 (361)
T d1m32a_           5 TPGPLTTSRTVKEAMLFDSC----------TWDDDYNIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSAL-   73 (361)
T ss_dssp             SSSSCCCCHHHHHTTCCCCC----------TTSHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHSC-
T ss_pred             cCCCCCCCHHHHHHhhhhcc----------CCCcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHhh-
Confidence            45677899999998754321          1223345578899999999999998765  8899999999999999988 


Q ss_pred             hhcCCCCEEEE-cCCCCcchHHHHHHHHhcCcEEEEEeCCCCC--CCCHHHHHHhcCCCceEEEEeccccccccccChHH
Q 040741          141 FYKDKKRHVIT-TQTEHKCVLDSCRHLQQEGFEITYLPVGADG--IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       141 ~~~~~g~~vi~-~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~--~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                         .+++.+++ ....+.......  .+..+.....+......  ..+.+.....++++++++++++++|.+|.+.|+++
T Consensus        74 ---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~i~~  148 (361)
T d1m32a_          74 ---GPQDKVLIVSNGAYGARMVEM--AGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDE  148 (361)
T ss_dssp             ---CTTCCEEEEESSHHHHHHHHH--HHHHTCCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHH
T ss_pred             ---hhccccceeeehhhhhhHHHH--hhhhhcccccccccccCCccchhhHHHHHhccCccceEEEeeecccccchhhhh
Confidence               55555544 444444333322  23335566655555443  33445555667889999999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCccc--------
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQE--------  288 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~--------  288 (457)
                      |.++|+++|+++++|++|++|..+++++++++|++++|+|| ++||+|+|+++++++..++..+...++...        
T Consensus       149 i~~~~~~~g~~~~vDa~qs~G~~~~d~~~~~~D~~~~s~~K~l~gp~G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (361)
T d1m32a_         149 VGALAHRYGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLSLDLYAQWRCM  228 (361)
T ss_dssp             HHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHH
T ss_pred             hhhhhcccceeeEeecccccCcccccccccccceEEeeecccccCCCCceEEEechhhhhhhccccccccccchhhhccc
Confidence            99999999999999999999999999999999999999999 568999999999998887777766654221        


Q ss_pred             ---cccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc---
Q 040741          289 ---RGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY---  360 (457)
Q Consensus       289 ---~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---  360 (457)
                         .....++++...+.++..++....++  .....++.+.+++.+.+.+..  .+..+..++..+.+.++.+.++.   
T Consensus       229 ~~~~~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~rs~~v~~~~~p~~~~  306 (361)
T d1m32a_         229 EDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRA--LGFNTLLDDELHSPIITAFYSPEDPQ  306 (361)
T ss_dssp             HHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECCCCTT
T ss_pred             cccccccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhh--cCCcccCChhhcCCcEEEEECCCCCC
Confidence               23345788888888888888766653  567777888888999999988  46666665555556666666542   


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+..++...|  +||.+.+|..+.+                    +.+||++..+++++|||+++++|++++
T Consensus       307 ~~~~~~~~~l~~~gi~i~~G~~~~~--------------------~~~Ris~~g~~~~~di~~lv~al~~~L  358 (361)
T d1m32a_         307 YRFSEFYRRLKEQGFVIYPGKVSQS--------------------DCFRIGNIGEVYAADITALLTAIRTAM  358 (361)
T ss_dssp             CCHHHHHHHHHHTTEECEECCCSSS--------------------CEEEEECCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHCCcEEECCCcCCC--------------------CEEEEeCCCCCCHHHHHHHHHHHHHHc
Confidence            3445666666  7888887765433                    789999776789999999999999874

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.3e-33  Score=276.99  Aligned_cols=342  Identities=14%  Similarity=0.118  Sum_probs=263.3

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC----CCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA----SPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~----~~~~i~~t~g~T~a~~~al  135 (457)
                      +|-.+|+++++++|++||.....         .| .+..+.+.+.++++.++++++.    +++.++||+|||+++++++
T Consensus         5 ~l~~PGP~~v~~~V~~Am~~~~~---------~h-r~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~   74 (382)
T d2bkwa1           5 TLLIPGPIILSGAVQKALDVPSL---------GH-TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFA   74 (382)
T ss_dssp             EECSSSSCCCCHHHHHTTSCCCC---------CT-TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHH
T ss_pred             cccCCCCCCCCHHHHHHhCcccC---------CC-CcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHH
Confidence            67778999999999999843321         11 2335556777788888888764    5567999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-CCCCCCCHHHHHHhcC-CCceEEEEecccccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-GADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~  213 (457)
                      .++...+ ++|++|++....|.+.... ..++..|..+..+.. +.+...+.+.+++++. .++++++++++++.+|...
T Consensus        75 ~~l~~~~-~~gd~vlv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~  152 (382)
T d2bkwa1          75 SNFILSK-APNKNVLVVSTGTFSDRFA-DCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTSTAVLS  152 (382)
T ss_dssp             HHHSCTT-CSCCEEEEECSSHHHHHHH-HHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEEC
T ss_pred             HHHHHhc-CCCCceEEEEechhhhhhh-hhccccccccccccccCCCCccchhHHHHHhhhccchheeeeeccccccccc
Confidence            9986322 6789999988777776543 344566888877754 4445678888887764 5789999999999999999


Q ss_pred             ChHHHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEeccccc-cCCCCceEEEEecCCCccccccccCCc----
Q 040741          214 PMEEIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-YGPKGVGALYMRRRPRIRVEPLINGGG----  286 (457)
Q Consensus       214 ~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-~g~~G~G~l~~~~~~~~~~~~~~~~~~----  286 (457)
                      |++++.++|+++  ++++++|+++++|..++++..+++|++++|.||+ .||+|+|+++++++.++++.+...++.    
T Consensus       153 ~~~~~~~~~~~~~~~~~~~vDa~qs~g~~pid~~~~giD~~~~s~~K~l~gP~G~g~l~vs~~~~~~~~~~~~~~~~~~~  232 (382)
T d2bkwa1         153 DLKAISQAIKQTSPETFFVVDAVCSIGCEEFEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALNDSKNGHVHGY  232 (382)
T ss_dssp             CHHHHHHHHHHHCTTSEEEEECTTTTTTSCCCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCHHHHCCCSCS
T ss_pred             cchhhhhhccccccceeeeeecccccccccccccccCeeEEeecccccCcCCCchhhhhccHHHHhhhhhcccCCCcccc
Confidence            999999998877  5999999999999999999999999999999995 589999999999987766654433221    


Q ss_pred             ---------------cccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC--CC
Q 040741          287 ---------------QERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM--ER  348 (457)
Q Consensus       287 ---------------~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~--~~  348 (457)
                                     ...+.+.+|+++..++++..|++++.+ +++.+.++.+++++++++.+.+ .++...+...  ..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~~~~~  311 (382)
T d2bkwa1         233 FSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVN-GLQLTSVSRYPSNM  311 (382)
T ss_dssp             TTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-TTCCEESSCSSSTT
T ss_pred             hhhhhhhhhhhhcccccccccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhh-cccccccccCchhc
Confidence                           123455789999999999999998876 5889999999999999999988 6676665432  22


Q ss_pred             cccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHH
Q 040741          349 RYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IGRFTTEAEVDRAIEL  425 (457)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~~~~t~edid~~~~~  425 (457)
                      +.+.++  .+...++.++...|  +||.+..|..+                  ..+++.+||+ ++..++.|||++++++
T Consensus       312 ~s~~v~--~~~~~~~~~~~~~L~~~gi~i~~G~~~------------------~~~~~~~Ri~~~G~~~~~e~i~~l~~~  371 (382)
T d2bkwa1         312 SAHGLT--AVYVADPPDVIAFLKSHGVVIAGGIHK------------------DIGPKYIRIGHMGVTACNKNLPYMKNC  371 (382)
T ss_dssp             BCSSCE--EEECSCHHHHHHHHHHTTEECBCCCCT------------------TTGGGEEEECCCGGGTSSTTCTHHHHH
T ss_pred             cCCcEE--EEcCCCHHHHHHHHHHCCeEEECCCCh------------------hhcCCEEEEeCCcCCCCHHHHHHHHHH
Confidence            333444  34445677777777  68988877543                  2334789999 6666778899999999


Q ss_pred             HHHHHHHHH
Q 040741          426 TVKQVEKLR  434 (457)
Q Consensus       426 l~~~~~~~~  434 (457)
                      |+...+.|+
T Consensus       372 l~~i~~~L~  380 (382)
T d2bkwa1         372 FDLIKLALQ  380 (382)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHC
Confidence            987666554

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=100.00  E-value=2.5e-32  Score=268.13  Aligned_cols=344  Identities=15%  Similarity=0.182  Sum_probs=267.7

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCc-EEEeCChHHHHHHHHHHh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKE-IIFTSGATESNNVSIKGV  138 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~-i~~t~g~T~a~~~al~~~  138 (457)
                      +|-.+|++.++++|++||.+...          +..+..+.+.+.++++.|++++|++..+ ++|++|||++++.++.++
T Consensus        19 ~l~~PGP~~~~~~V~~Am~~~~~----------~hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l   88 (388)
T d2ch1a1          19 IMMGPGPSNCSKRVLTAMTNTVL----------SNFHAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL   88 (388)
T ss_dssp             BCCSSSSCCCCHHHHHHTTSCCC----------CTTCHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH
T ss_pred             eeeeCCCCCCCHHHHHHhCcCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh
Confidence            67778999999999999854432          2336677899999999999999997554 667888999999999999


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhc-CCCceEEEEeccccccccccChHH
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAI-RPDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i-~~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      .    .+++++++....|.+.... ......+.....+..+.....+.+++++++ +.+++++++++.+|.+|...|+++
T Consensus        89 ~----~~~~~vl~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~t~tG~~~~~~~  163 (388)
T d2ch1a1          89 L----EEGDRVLIAVNGIWAERAV-EMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG  163 (388)
T ss_dssp             C----CTTCEEEEEESSHHHHHHH-HHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred             c----cccccccccccccccccch-hhhhhhcccccccccccccccchhhhhhhhccCCcceeeeeecccccccccchhh
Confidence            8    7899998888777765443 444566888888888877777877777665 467899999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccC------------
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING------------  284 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~------------  284 (457)
                      |.++||++++++++|+++++|..+++++++++|++++|.|| +.||+|+|+++++++.+++......+            
T Consensus       164 i~~~~~~~~~~~~vD~~ss~g~~pid~~~~~~d~~~~s~~K~~~gp~G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (388)
T d2ch1a1         164 VGQICHQHDCLLIVDAVASLCGVPFYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDLLLLG  243 (388)
T ss_dssp             HHHHHHHTTCEEEEECTTTBTTBCCCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHH
T ss_pred             hcchhccccceeeeeeeecccccccchhccCceEEEEccccccCCCCeEEEEeccHHHHHhhhcccCccccccccchhhh
Confidence            99999999999999999999999999999999999999999 56789999999998655543322111            


Q ss_pred             ----CccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          285 ----GGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       285 ----~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                          .....+.+.++++...+.++..+++.+.. +.....++.+....+.+..+.. ........++..+.+.++.+.++
T Consensus       244 ~~~~~~~~~~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~~~~p  322 (388)
T d2ch1a1         244 NYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGK-MGLDIFVKDPRHRLPTVTGIMIP  322 (388)
T ss_dssp             HHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH-HTCCBSSCSGGGBCTTEEEEECC
T ss_pred             hhhcccccccccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh-cccccccCCHHHhCCeEEEEECC
Confidence                11123345678888999999888887765 3566666666666667776666 33333345555666777888884


Q ss_pred             -cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          360 -YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       360 -~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                       +.+..++...|   .||.+..|..|..                   ++.+||+ ++.+++.|||++++++|+++++.  
T Consensus       323 ~g~~~~~l~~~l~~~~gI~v~~G~~~~~-------------------~~~~RIs~~g~~~t~edI~~ll~alke~L~~--  381 (388)
T d2ch1a1         323 KGVDWWKVSQYAMNNFSLEVQGGLGPTF-------------------GKAWRVGIMGECSTVQKIQFYLYGFKESLKA--  381 (388)
T ss_dssp             TTCCHHHHHHHHHHHHCBCCBCCCGGGT-------------------TTEEEEECCGGGCSHHHHHHHHHHHHHHHHH--
T ss_pred             CCCCHHHHHHHHhhcCCEEEeCCCcccc-------------------CCEEEEcCCcCCCCHHHHHHHHHHHHHHHHh--
Confidence             67777887776   3898988876532                   2689999 57778899999999999998765  


Q ss_pred             hcChhHH
Q 040741          435 EMSPLYE  441 (457)
Q Consensus       435 ~~~~~~~  441 (457)
                       |+|.++
T Consensus       382 -~~~~~~  387 (388)
T d2ch1a1         382 -THPDYI  387 (388)
T ss_dssp             -HCTTCC
T ss_pred             -hCCccC
Confidence             777653

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.6e-32  Score=259.69  Aligned_cols=333  Identities=13%  Similarity=0.099  Sum_probs=265.2

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhh
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVM  139 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~  139 (457)
                      ||-.+|+++++++|++||.+...+          ..+..+.+.+.++++.++++++.+.+.++|++|||.++++++.++.
T Consensus         2 ~L~~PGP~~v~~~V~~am~~~~~~----------hr~~~f~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl~   71 (348)
T d1iuga_           2 WLLTPGPVRLHPKALEALARPQLH----------HRTEAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNLF   71 (348)
T ss_dssp             EECSSSSCCCCHHHHHHHHSCCCC----------TTSHHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHHC
T ss_pred             cccCCCCCCCCHHHHHHhcCCCCC----------CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhcc
Confidence            788899999999999998765321          2245677899999999999999887779999999999999999998


Q ss_pred             hhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHH
Q 040741          140 HFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIG  219 (457)
Q Consensus       140 ~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~  219 (457)
                          .+++++++....+.+.. ....++..|.++..++.+.+..+++++   ....+++.++++|..+.+|.+.|+++|.
T Consensus        72 ----~~g~~vlv~~~G~f~~~-~~~~a~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~v~~~h~eTstG~~~~i~~i~  143 (348)
T d1iuga_          72 ----APGERVLVPVYGKFSER-FYEIALEAGLVVERLDYPYGDTPRPED---VAKEGYAGLLLVHSETSTGALADLPALA  143 (348)
T ss_dssp             ----CTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCTTT---SCCSSCSEEEEESEETTTTEECCHHHHH
T ss_pred             ----cccccceeecchHHHHH-HHHHHHhcCcccccccccCCCcccccc---ccccCCCeeEEEecchhhhhhccHHHHH
Confidence                78999888777766554 346667789999999887665555544   3456788999999999999999999999


Q ss_pred             HHHHhc--CCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccC-------Ccccc
Q 040741          220 QICKEF--KIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLING-------GGQER  289 (457)
Q Consensus       220 ~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~-------~~~~~  289 (457)
                      ++|+++  +.++++|+++++|..+++++.+++|++++|.|| +.||+|+|+++++++.++++++....       ..+..
T Consensus       144 ~~~~~~~~~~l~~vDavss~g~~~i~~d~~~iD~~~~~sqK~l~gppG~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~  223 (348)
T d1iuga_         144 RAFKEKNPEGLVGADMVTSLLVGEVALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLARELKAQKE  223 (348)
T ss_dssp             HHHHHHCTTCEEEEECTTTBTTBCCCSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTT
T ss_pred             HHHHhhhccceeechhhhcccccccccccccCCEEEeccccceecCCceeeeeechHHHhhhcccccccchhhhhhhhcc
Confidence            999998  478999999999999999999999999999999 55999999999999877776543111       11234


Q ss_pred             ccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchHHHh
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGESLLM  368 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  368 (457)
                      +..++||++..++++..+++.+.+++.+..++.+.....++..++.  .++.+..+  .+.+.++.+.++ +++..++..
T Consensus       224 ~~~~~Tp~v~~i~~l~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~gl~~~~~--~~s~~v~~~~~P~g~~~~~~~~  299 (348)
T d1iuga_         224 GESAWTPAINLVLAVAAVLEEVLPRLEEHLALKAWQNALLYGVGEE--GGLRPVPK--RFSPAVAAFYLPEGVPYARVKE  299 (348)
T ss_dssp             TCCSSCCCHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHH--TTCEESCS--SBCTTCEEEECCTTCCHHHHHH
T ss_pred             CcccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhh--hhhccChh--hcCCeEEEEECCCCCCHHHHHH
Confidence            5567899999999999999988766665555555555555555555  57777643  345666777775 567777777


Q ss_pred             cc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          369 GL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       369 ~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .|  +|+.+.+|..                   ...+..+||+...+++.+|+++++++|+++++++
T Consensus       300 ~l~~~gi~i~~G~~-------------------~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~~  347 (348)
T d1iuga_         300 AFAQRGAVIAGGQG-------------------PLKGKVFRLSLMGAYDRYEALGVAGMFREVLEEI  347 (348)
T ss_dssp             HHHTTTEECEECCG-------------------GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCeEEEcCcc-------------------ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            77  6888877753                   2334789999888899999999999999999875

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=100.00  E-value=7e-32  Score=263.77  Aligned_cols=339  Identities=17%  Similarity=0.211  Sum_probs=268.6

Q ss_pred             CcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~al  135 (457)
                      +.-+|..+|+++++++|++||.....          +..+..+.+.++++++.+++++|++.+ .++|++|||+++++++
T Consensus        17 p~~~l~~PGP~~v~~~Vl~am~~~~~----------~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~   86 (377)
T d1vjoa_          17 PSRLLLGPGPSNAHPSVLQAMNVSPV----------GHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATI   86 (377)
T ss_dssp             CCCEECSSSCCCCCHHHHHHHSSCCC----------CTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHH
T ss_pred             CcceeecCCCCCCCHHHHHHhCcCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHH
Confidence            34588899999999999999854321          223567789999999999999999644 5888899999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHh-cCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAA-IRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~-i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      .++.    .+++++++....|.+.... ......+.....+..+.+...+.+..+.. .+.+++++++++.+|.+|.+.|
T Consensus        87 ~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tg~~~~  161 (377)
T d1vjoa_          87 ANAV----EPGDVVLIGVAGYFGNRLV-DMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQP  161 (377)
T ss_dssp             HHHC----CTTCEEEEEESSHHHHHHH-HHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECC
T ss_pred             Hhcc----ccccccceeeechhhhhhh-hhhhhhcccccccccCCCCcccchhhhhhhhcCcceeeeeeeeeccceeeec
Confidence            9988    8899999988888766443 34455677777777766655666655544 4568899999999999999999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCc-------
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGG-------  286 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~-------  286 (457)
                      +++|.++||++|+++++|++|++|..+++++.+++|++++|.|| ++||+|+|+++++++.++...+...++.       
T Consensus       162 i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~~~d~~~~s~~K~~~gp~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (377)
T d1vjoa_         162 LEGVGELCREFGTLLLVDTVTSLGGVPIFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDMN  241 (377)
T ss_dssp             CTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCHH
T ss_pred             hhhhhhhhhhccceEEEecchhhhhhhhcccccccceeeecccccccCCCEEEEecchhhHHhhhhccCCCCcceeeccc
Confidence            99999999999999999999999999999999999999999999 6788899999998876554443332221       


Q ss_pred             ------cccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          287 ------QERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       287 ------~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                            .......++++...+.++..+...... +.+...++.+++.+++.+.+.+  .++.++.++..+.+.++.+.++
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~rs~~v~~~~~p  319 (377)
T d1vjoa_         242 LLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLED--IGLSLHVEKEYRLPTLTTVCIP  319 (377)
T ss_dssp             HHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCGGGBCSSEEEEECC
T ss_pred             hhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhc--cCceeecChHhcCCeEEEEECC
Confidence                  112345567777788888777776665 4888889999999999999988  4666666666777888878774


Q ss_pred             -cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEe-cCCCCCHHHHHHHHHHHHHHHH
Q 040741          360 -YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFG-IGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       360 -~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~-~~~~~t~edid~~~~~l~~~~~  431 (457)
                       +.++.++...|   .||.+..|..|.                   .++.|||+ ++++++.||||+++++|+++++
T Consensus       320 ~~~~~~~l~~~L~~~~gI~v~~G~~~~-------------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         320 DGVDGKAVARRLLNEHNIEVGGGLGEL-------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             TTCCHHHHHHHHHHHHCEECEECCGGG-------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHhcCCEEEecCcccc-------------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence             56778887766   489888876432                   23789999 4777889999999999998864

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.6e-31  Score=259.86  Aligned_cols=339  Identities=15%  Similarity=0.182  Sum_probs=228.0

Q ss_pred             CCCCCHHHHHHHHHHHhhccCCCCCCccchhh-hHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           66 TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGW-ESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        66 ~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      .+.+++++.+++.++................+ ...+.++.+++.+|+++|++  ++++|+|||+|+.+++.+++    +
T Consensus        11 ~~~l~~~a~~a~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e--~~~~t~g~t~a~~~~~~al~----~   84 (364)
T d2e7ja1          11 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD--VARVTNGAREAKFAVMHSLA----K   84 (364)
T ss_dssp             TCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS--EEEEESSHHHHHHHHHHHHC----C
T ss_pred             CCcCCHHHHHHHHHHhcCCchhccccccccccccChHHHHHHHHHHHHHhCcC--EEEEECcHHHHHHHHHHHHh----C
Confidence            45788999999988654211000000000111 11136778999999999985  49999999999999999998    8


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCC-----CceEEEEeccccccccccChHH
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRP-----DTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G~~~~l~~  217 (457)
                      +||+||++.++|++...+++.+   |+++.++|++  .++.+|++++++++++     ++++|++++++|++|.+.|+++
T Consensus        85 ~gd~Vi~~~~~h~s~~~~~~~~---g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~  161 (364)
T d2e7ja1          85 KDAWVVMDENCHYSSYVAAERA---GLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKK  161 (364)
T ss_dssp             TTCEEEEETTCCHHHHHHHHHT---TCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHH
T ss_pred             CCcEEEeecccccccchHHHhc---cceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchh
Confidence            9999999999999999887655   9999999986  4568999999999954     3568999999999999999999


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC-CCceEEEEecCCCccccccccCC-ccccccccCC
Q 040741          218 IGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP-KGVGALYMRRRPRIRVEPLINGG-GQERGIRSGT  295 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~-~G~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~t  295 (457)
                      |.++|++||+++|+|++|++|..+++..++++|++++|+||++|+ .|+|+++++++..+.+....... .....+..++
T Consensus       162 I~~ia~~~~i~livD~a~~~g~~~~~~~~~g~D~~~~S~~K~~~~~g~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (364)
T d2e7ja1         162 IAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCT  241 (364)
T ss_dssp             HHHHHHTTTCCEEEECTTTBTTBCCCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCC
T ss_pred             heeccccccchhhccccchhhhhhhcccccccceeeeccccccCCCCCEEEEEECHHHHHHHHhhccccCcccccccccc
Confidence            999999999999999999999999888888999999999997664 45899999987766554332221 1112233345


Q ss_pred             CChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcccCeEe
Q 040741          296 LPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGLKEVAV  375 (457)
Q Consensus       296 ~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~  375 (457)
                      .......++.++++...+.+++..+. .++++++.+.+.+ + ++.+.+..... ...+.+..+.  ..++...+.....
T Consensus       242 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~l~~-~-g~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~  315 (364)
T d2e7ja1         242 ARGATIITLMASFPHVRERIKRWDEE-VEKARRFAAEMEK-L-GIKQLGDNPHN-HDLMFFHAEV--LYEISKKAKGGRF  315 (364)
T ss_dssp             CCSHHHHHHHHHHHHHHHHGGGHHHH-HHHHHHHHHHHHH-T-TCEEESSSSCC-SSEEEEECHH--HHHHHHHSSSGGG
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-c-CCeecCCCCCC-cceEEEeccc--hHHHHHHhhccch
Confidence            55556666666777666555554443 4567788888888 4 55555432221 2333333321  1111111110000


Q ss_pred             cccCccCCCCCChhHHHHHc---CCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          376 SSGSACTSASLEPSYVLRAL---GVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       376 ~~g~~~~~~~~~~~~~l~~~---g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..           ...+...   +... .....+|++. ..+|+||||+++++|++++++
T Consensus       316 ~~-----------~~~l~~~~~~~~~~-g~~~~~~~~~-~~~t~edid~~~~~l~ei~~~  362 (364)
T d2e7ja1         316 FL-----------YRELKSRKIHGIKP-GLTRYFKLST-YGLSDEEVDYVLNAFKEIIEK  362 (364)
T ss_dssp             HH-----------HHHHHHTTEECSCT-TCCSEEEEEC-TTCCHHHHHHHHHHHHHHHHH
T ss_pred             HH-----------HHHHHhcCCceecC-CCcceEEEec-cCCCHHHHHHHHHHHHHHHHH
Confidence            00           0000000   1111 1114566663 346899999999999999886

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6e-29  Score=246.86  Aligned_cols=352  Identities=14%  Similarity=0.024  Sum_probs=256.1

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCC-----cEEEeCChHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPK-----EIIFTSGATESNNV  133 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-----~i~~t~g~T~a~~~  133 (457)
                      .+|....++.+++++.+.|.+++...+.+..     ....+.+...++.+++++++|++..     ...+|+|||+|+.+
T Consensus        56 ~n~asf~~t~~~~~~~~l~~~~~~~N~~~~~-----~~P~~~~lE~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~  130 (450)
T d1pmma_          56 QNLATFCQTWDDENVHKLMDLSINKNWIDKE-----EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML  130 (450)
T ss_dssp             GBCSCCSCCCCCHHHHHHHHHTTTCBTTCTT-----TSHHHHHHHHHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHH
T ss_pred             ccccccccCCCCHHHHHHHHHHHhcCCCCcc-----cCccHHHHHHHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHH
Confidence            4555556778999999999988765433322     1234456778899999999998532     27999999999999


Q ss_pred             HHHHhhhhhc--------CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEec
Q 040741          134 SIKGVMHFYK--------DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       134 al~~~~~~~~--------~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      ++.+....+.        .....++++...|.++..+++++   |++++.+++++ ++.+|+++|+++++++|.+|+++.
T Consensus       131 a~~aar~~~~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~---gi~~~~v~~~~~~~~~d~~~L~~~i~~~t~~Vv~t~  207 (450)
T d1pmma_         131 GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYW---DVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTF  207 (450)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCSCCEEEESSCCHHHHHHHHHT---TCEEEECCCBTTBCSCCHHHHHHHCCTTEEEEECBB
T ss_pred             HHHHHHHHHHHHhhhcCCCCCCceEEecccHHHHHHHHHHc---CCCceEeeecCCCCcCcHHHHHHHhhhCceEEEeee
Confidence            9998764321        12345777788999999999998   99999999885 599999999999999999999999


Q ss_pred             cccccccccChHHHHHHH------HhcCCcEEEehhhhcCCCcccCC-------CCcccEEEeccccc-cCCCCceEEEE
Q 040741          205 VNNEIGVIQPMEEIGQIC------KEFKIPFHTDAAQALGKIPVDVE-------KWNVSLMSLSGHKI-YGPKGVGALYM  270 (457)
Q Consensus       205 ~~~~~G~~~~l~~i~~l~------~~~~v~li~D~a~~~g~~~~~~~-------~~~~Di~~~s~~K~-~g~~G~G~l~~  270 (457)
                      .++.+|.+.|+++|.++|      +++|+++|+|+|++.+..++...       -.++|.+++|+||+ ++|.|+|++++
T Consensus       208 gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~  287 (450)
T d1pmma_         208 GVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIW  287 (450)
T ss_dssp             SCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEE
T ss_pred             eeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeeeechhhhhhhcccceeEeecChhhccCCCCCeeEEEe
Confidence            999999999998887775      56899999999998776654332       23699999999995 66889999999


Q ss_pred             ecCCCccc----cccccCCccccccccCCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          271 RRRPRIRV----EPLINGGGQERGIRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       271 ~~~~~~~~----~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                      +++.....    .+...++.+......++-+...+.++..++. +..+++.+..++..++++++.+.|++ .++++++.+
T Consensus       288 r~~~~~~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~-~~~~el~~~  366 (450)
T d1pmma_         288 RDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAK-LGPYEFICT  366 (450)
T ss_dssp             SSGGGSCGGGCEEEEETTEEEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCEEEEEE
T ss_pred             cChhhhhhhcccccCcCCCCcCCCcccCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEeC
Confidence            87532211    1222233322222233444444444444444 44557999999999999999999999 899988754


Q ss_pred             CC-CcccceEEEEEcc-----ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741          346 ME-RRYIGNLNLSFAY-----VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA  417 (457)
Q Consensus       346 ~~-~~~~~~~~~~~~~-----~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e  417 (457)
                      .. ....+.+.|.+..     .+..++...|  +|..+.....  ++              .......+|+.+...+|++
T Consensus       367 ~~p~~~l~~V~Fr~~~~~~~~~~~~~l~~~L~~~Gw~v~~~~~--p~--------------~~~~~~~lRvvv~~~~t~e  430 (450)
T d1pmma_         367 GRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTL--GG--------------EATDIVVMRIMCRRGFEMD  430 (450)
T ss_dssp             CCTTTBSSEEEEEECTTCCCSSCHHHHHHHHHTTTCBCCEEEC--CT--------------TCTTCEEEEEECCTTCCHH
T ss_pred             CCCCCceEEEEEecCCcccCCCCHHHHHHHHHHcCCeeeccCc--CC--------------CcCCcEEEEEEccCCCCHH
Confidence            32 1224556777643     3334666666  4554432110  00              0112368999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHh
Q 040741          418 EVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       418 did~~~~~l~~~~~~~~~  435 (457)
                      ++|.+++.|+++++++++
T Consensus       431 ~~d~lv~dl~~~v~~l~~  448 (450)
T d1pmma_         431 FAELLLEDYKASLKYLSD  448 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            999999999999999875

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.9e-30  Score=249.38  Aligned_cols=327  Identities=19%  Similarity=0.183  Sum_probs=243.8

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      +.|.|..+.+. ++|+.+++++.+.+....+++..          ....++|+.++++++++++++++|+|+|+++.+++
T Consensus        26 ~~I~ls~g~p~~~~p~~i~~al~~~l~~~~~Y~~~----------~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~   95 (368)
T d1v2da_          26 GAVNLGQGFPSNPPPPFLLEAVRRALGRQDQYAPP----------AGLPALREALAEEFAVEPESVVVTSGATEALYVLL   95 (368)
T ss_dssp             TCEECCCCSCSSCCCHHHHHHHHHHTTTSCSCCCT----------TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred             CCEEecCCCCCCCCCHHHHHHHHHHhhcccCCCCC----------cCCHHHHHHHHhhcccCCcceeeccchHHHHHHHh
Confidence            45777666665 67899999999987643222221          23568899999999999999999999999999999


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcCCCceEEEEeccccccccc
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~  212 (457)
                      .++.    ++++.|++..+.|+.+...++..   |.+++.++.+   .++.+|+++++++++++++++++++++||||.+
T Consensus        96 ~~l~----~~~d~v~~~~p~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~  168 (368)
T d1v2da_          96 QSLV----GPGDEVVVLEPFFDVYLPDAFLA---GAKARLVRLDLTPEGFRLDLSALEKALTPRTRALLLNTPMNPTGLV  168 (368)
T ss_dssp             HHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEEETTEEECCHHHHHTTCCTTEEEEEEESSCTTTCCC
T ss_pred             hccc----cccccccccCCcchhhhhHHHhc---CCccceeccccccccccCCHHHHHHhhccCceEEEEcCCCCccccc
Confidence            9998    89999999999999999888776   8888887764   345789999999999999999999999999999


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCCCcccCC-----CCcccEEEeccccccCCCC--ceEEEEecCCCccccccc
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGKIPVDVE-----KWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~-----~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~  282 (457)
                      .+   +++|+++|++||+++++|+++..........     ..+..+++.|++|.+|.+|  +|+++.+++....+....
T Consensus       169 ~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~~~~~~~~  248 (368)
T d1v2da_         169 FGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFMPRLAGMR  248 (368)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeecccccccccccccccccccccccchhhhhh
Confidence            98   7789999999999999999987543322211     1134566778888555443  899998877665544333


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY  360 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  360 (457)
                      ..       .....+.....++..++.....  .+++..+.++++++++.+.|++ + ++.+..+..   ..++.+.+++
T Consensus       249 ~~-------~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~-g~~~~~p~g---~~~~~~~l~~  316 (368)
T d1v2da_         249 QW-------TSFSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRA-M-GLRVYVPEG---TYFLMAELPG  316 (368)
T ss_dssp             HH-------HTSSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-T-TCCEECCSB---SSEEEEECTT
T ss_pred             hc-------cccccccccccccccccccccchhhHHHHHHHHHHhhhhhhhhHHh-c-CcEEecCCc---eeEEEEeCCc
Confidence            21       1124444444444455544332  4778888889999999999999 4 777765432   3445566666


Q ss_pred             ccchHHHhcccCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .+..+++.. +||.+.+|..|...               ...+++|||+++  .++|++++++++|++++
T Consensus       317 ~~~~~ll~~-~gI~v~pg~~F~~~---------------~~~~~~iRis~~--~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         317 WDAFRLVEE-ARVALIPASAFYLE---------------DPPKDLFRFAFC--KTEEELHLALERLGRVV  368 (368)
T ss_dssp             CCHHHHHHH-TCEECEEGGGGCSS---------------SCCTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHh-CCEEEEechhhCCC---------------CCCCCEEEEEec--CCHHHHHHHHHHHHHhC
Confidence            555554332 79999999876531               223489999986  47899999999998863

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.97  E-value=3.2e-30  Score=252.90  Aligned_cols=334  Identities=15%  Similarity=0.087  Sum_probs=237.8

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a~~  132 (457)
                      .+.|.|..+.+. ++|+.+.+++.+.+.....     .|....+..+..+.+.+++.+..|  ++++++++|+|+++++.
T Consensus        30 ~~vi~l~~G~p~~~~p~~v~~a~~~~~~~~~~-----~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~  104 (388)
T d1j32a_          30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQGKT-----RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIF  104 (388)
T ss_dssp             CCCEECCCSSCSSCCCHHHHHHHHHHHHTTCC-----SCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred             CCeEECCCCCCCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHH
Confidence            356777776655 6789999999998764210     011111112333344444444444  46778999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVNNEIG  210 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~~~~G  210 (457)
                      +++.+++    ++||.|+++.+.|+.+...++..   |.+++.++..  .++.+|+++++++++++++++++++++||||
T Consensus       105 ~~~~~~~----~~gd~Vlv~~P~y~~~~~~~~~~---~~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~~P~NPTG  177 (388)
T d1j32a_         105 NLMLAMI----EPGDEVIIPAPFWVSYPEMVKLA---EGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTG  177 (388)
T ss_dssp             HHHHHHC----CTTCEEEEESSCCTHHHHHHHHT---TCEEEEECCCGGGTTCCCHHHHHHHCCTTEEEEEEESSCTTTC
T ss_pred             HHHHHHh----CCCCEEEEcCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECCCCCCCC
Confidence            9999998    89999999999999998877665   8888888876  3457999999999999999999999999999


Q ss_pred             cccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----ccCCC-----CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          211 VIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VDVEK-----WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       211 ~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~~-----~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      .+.+   +++|+++|+++|++||+|++|+.....    ..+..     .+..+++.|++|.||.+|  +||++++++.++
T Consensus       178 ~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~~~~~~  257 (388)
T d1j32a_         178 MVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGPVPLVK  257 (388)
T ss_dssp             CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECCHHHHH
T ss_pred             cccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEECHHHHH
Confidence            9988   667888899999999999999643221    11111     124578999999887665  899998876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      .+......       ....++.....++..++....+.+.+..+.++++++.+.+.|.+ ++++.+..+..   +.++.+
T Consensus       258 ~~~~~~~~-------~~~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~g---g~~l~~  326 (388)
T d1j32a_         258 AATKIQGH-------STSNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALNA-MPGLECPKPDG---AFYMFP  326 (388)
T ss_dssp             HHHHHHHT-------TTCSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHHT-CTTCBCCCCCB---TTEECC
T ss_pred             HHHHhhhh-------ccccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEecCCCc---eEEEEE
Confidence            44332211       11244444444444444433345788888999999999999998 78877654321   223333


Q ss_pred             EEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          357 SFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       357 ~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .++  ..+..++...|   .||.+.+|..+..                   .+++|++++  .++|++++++++|+++++
T Consensus       327 ~l~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~-------------------~~~~Rls~~--~~~e~l~~al~rl~~~l~  385 (388)
T d1j32a_         327 SIAKTGRSSLDFCSELLDQHQVATVPGAAFGA-------------------DDCIRLSYA--TDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             BCGGGTCCHHHHHHHHHHHHCEECEEGGGGTC-------------------TTBEEEECC--SCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCHHHHHHHHHHhCCEEEEeccccCC-------------------CCeEEEEEe--CCHHHHHHHHHHHHHHHH
Confidence            443  23445666555   4999999875421                   279999997  478999999999999998


Q ss_pred             HH
Q 040741          432 KL  433 (457)
Q Consensus       432 ~~  433 (457)
                      .+
T Consensus       386 ~l  387 (388)
T d1j32a_         386 GI  387 (388)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=4.9e-29  Score=244.57  Aligned_cols=331  Identities=13%  Similarity=0.107  Sum_probs=238.0

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHh----C---CCCCcEEEeCC
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLI----G---ASPKEIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g---~~~~~i~~t~g  126 (457)
                      .+.|.|..+.+. ++|+.+.+++.+.+.+. .+++.          .....++|+.+++++    +   .+++++++|+|
T Consensus        25 ~dvi~l~~g~p~~~~p~~v~~~~~~a~~~~~~~Y~~----------~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G   94 (388)
T d1gdea_          25 KDVISLGIGEPDFDTPQHIKEYAKEALDKGLTHYGP----------NIGLLELREAIAEKLKKQNGIEADPKTEIMVLLG   94 (388)
T ss_dssp             TTCEECCCCSCCSCCCHHHHHHHHHHHHTTCCSCCC----------TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESS
T ss_pred             CCeEECCCCCCCCCCCHHHHHHHHHHHhcCccCCCC----------CcCCHHHHHHHHHHHHhhccccCCChheeeeccC
Confidence            456788777666 67899999999988652 11111          123456667776665    2   34567999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEec
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      +++++.+++.+++    ++||.|++..++|+.+...++.+   |.+++.++.+  .+..+|+++|+++++++++++++++
T Consensus        95 ~~~~l~~~~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  167 (388)
T d1gdea_          95 ANQAFLMGLSAFL----KDGEEVLIPTPAFVSYAPAVILA---GGKPVEVPTYEEDEFRLNVDELKKYVTDKTRALIINS  167 (388)
T ss_dssp             TTHHHHHHHTTTC----CTTCEEEEEESCCTTHHHHHHHH---TCEEEEEECCGGGTTCCCHHHHHHHCCTTEEEEEEES
T ss_pred             cchHHHHHHHHhc----CCCCEEEECCCCcHHHHHHHHHc---CCEEEEeecccccCCCCCHHHHHHhCccCCeEEEECC
Confidence            9999999999998    89999999999999999888877   9999999986  3457999999999999999999999


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc---cCCC-CcccEEEeccccccCCCC--ceEEEEe
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV---DVEK-WNVSLMSLSGHKIYGPKG--VGALYMR  271 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~---~~~~-~~~Di~~~s~~K~~g~~G--~G~l~~~  271 (457)
                      ++||||.+.+   +++|+++|++|+++||+|++|+....    ..   .... .+..+++.|++|.||.+|  +|++++.
T Consensus       168 P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii~~  247 (388)
T d1gdea_         168 PCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVAAP  247 (388)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEECC
T ss_pred             CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEEee
Confidence            9999999988   67788999999999999999974211    11   1111 234688999999887555  9999998


Q ss_pred             cCCCccccccccCCccccccccCCCChhHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc
Q 040741          272 RRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI--AKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR  349 (457)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  349 (457)
                      ++...++......       .....+.....++..+++.  ..+.+.+..+.+++..+.+.+.|.. . ++.+..+ .. 
T Consensus       248 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~p-~g-  316 (388)
T d1gdea_         248 SWIIERMVKFQMY-------NATCPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNE-M-GLPTVKP-KG-  316 (388)
T ss_dssp             HHHHHHHHHHHHT-------TTCSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-T-TCCCCCC-CB-
T ss_pred             ccchhhhhhcccc-------ccccccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhh-c-cccccCC-Cc-
Confidence            7665555443322       1124444444444444432  2233566777778888888888887 3 4433322 11 


Q ss_pred             ccceEEEEEc--cccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          350 YIGNLNLSFA--YVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       350 ~~~~~~~~~~--~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                       +.++.+.++  +.+..++...+   .||.+.+|..|..                 ...+++||+++  +++|+++++++
T Consensus       317 -g~fl~~~l~~~~~~~~~~~~~ll~e~gV~v~PG~~F~~-----------------~~~~~iRis~~--~~~e~l~~al~  376 (388)
T d1gdea_         317 -AFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGK-----------------AGEGYVRISYA--TAYEKLEEAMD  376 (388)
T ss_dssp             -TTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHH
T ss_pred             -eEEEEEECCCCCCCHHHHHHHHHHhCCEEEEechhhCC-----------------CCCCEEEEEec--CCHHHHHHHHH
Confidence             333444443  24556666654   4999999976532                 12379999997  47899999999


Q ss_pred             HHHHHHHHHH
Q 040741          425 LTVKQVEKLR  434 (457)
Q Consensus       425 ~l~~~~~~~~  434 (457)
                      +|++++++.|
T Consensus       377 rL~~~l~e~k  386 (388)
T d1gdea_         377 RMERVLKERK  386 (388)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhcC
Confidence            9999998764

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=4.4e-29  Score=244.32  Aligned_cols=325  Identities=15%  Similarity=0.129  Sum_probs=229.1

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHh------CCCCCcEEEeCC
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLI------GASPKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------g~~~~~i~~t~g  126 (457)
                      +.+.|.|..+.+. +.|+++++++.+.+.+. .+++..          ....++|+.+++++      +++++++++|+|
T Consensus        30 G~~vi~l~~g~p~~~~p~~i~~a~~~~~~~~~~~Y~~~----------~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G   99 (382)
T d1b5pa_          30 GVDLVALTAGEPDFDTPEHVKEAARRALAQGKTKYAPP----------AGIPELREALAEKFRRENGLSVTPEETIVTVG   99 (382)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCCCT----------TCCHHHHHHHHHHHHHTTCCCCCGGGEEEESH
T ss_pred             CCCeEECCCCCCCCCCCHHHHHHHHHHHhcCCcCCCCC----------CCCHHHHHHHHhhhhhhcccccccccceecCC
Confidence            3456888777766 67899999999987642 122111          22345555565554      456789999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEec
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMA  204 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~  204 (457)
                      +++|+.+++.+++    ++||.|++..+.|+.+...++.+   |.+++.++..  .+..+|+++++++++++++++++++
T Consensus       100 ~~~al~~~~~~l~----~~gd~vl~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~  172 (382)
T d1b5pa_         100 GSQALFNLFQAIL----DPGDEVIVLSPYWVSYPEMVRFA---GGVVVEVETLPEEGFVPDPERVRRAITPRTKALVVNS  172 (382)
T ss_dssp             HHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHTTCCTTEEEEEEES
T ss_pred             HHHHHHHHHHHhC----CCCCEEEECCCCcHHHHHHHHHh---cCeEEEEecccccccCCCHHHHHHhCCCCCeEEEECC
Confidence            9999999999998    89999999999999998887766   9999999876  3457899999999999999999999


Q ss_pred             cccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC---ccc--CCCCcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          205 VNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI---PVD--VEKWNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       205 ~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~---~~~--~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      +|||||.+.+   +++|+++|++||++||+|++|+....   +..  ....+..+++.|++|.||.+|  +||++++++.
T Consensus       173 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~  252 (382)
T d1b5pa_         173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEV  252 (382)
T ss_dssp             SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHH
T ss_pred             CCCCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHH
Confidence            9999999988   77899999999999999999973211   111  111134588889999888555  8999998766


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE---IAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI  351 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  351 (457)
                      ++.+......       ....++.....++..++.   .....+...++.++++++.+.+.+.+  .++.+..+ +.  +
T Consensus       253 i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p-~g--g  320 (382)
T d1b5pa_         253 IKAMASVSRQ-------STTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTA--LGLKAVRP-SG--A  320 (382)
T ss_dssp             HHHHHHHHHT-------TTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCC-SB--T
T ss_pred             HHHHHHHHHh-------cccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhh--cCCeEecC-Cc--e
Confidence            5554332221       112334333333323332   12223566677778888888888877  35555432 22  3


Q ss_pred             ceEEEEEcc--ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          352 GNLNLSFAY--VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       352 ~~~~~~~~~--~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      .++.+.+..  .+...+...+  +||.+.+|..+..                   .+++||+++.  ++|+++.++++|+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~l~e~gV~v~PG~~F~~-------------------~~~iRis~~~--~~e~l~~al~rl~  379 (382)
T d1b5pa_         321 FYVLMDTSPIAPDEVRAAERLLEAGVAVVPGTDFAA-------------------FGHVRLSYAT--SEENLRKALERFA  379 (382)
T ss_dssp             TEEEEECTTTCSSHHHHHHHHHHTTEECEESGGGTC-------------------TTEEEEECCS--CHHHHHHHHHHGG
T ss_pred             EEEeEeCCCCCCCHHHHHHHHHHCCEEEEeCcccCC-------------------CCeEEEEEcC--CHHHHHHHHHHHH
Confidence            344455543  2344555545  7999999975532                   2799999963  7889999888887


Q ss_pred             HH
Q 040741          428 KQ  429 (457)
Q Consensus       428 ~~  429 (457)
                      ++
T Consensus       380 ~~  381 (382)
T d1b5pa_         380 RV  381 (382)
T ss_dssp             GG
T ss_pred             Hh
Confidence            65

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=3.4e-28  Score=238.32  Aligned_cols=334  Identities=15%  Similarity=0.131  Sum_probs=243.8

Q ss_pred             CcEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      +.-|+|+.++..    -+|++.+++.+.++.+.-.+.+  .+......+.++++++.+++++|.+.  ++++++|++|+.
T Consensus        44 G~~~l~f~s~dYLGl~~hp~v~~a~~~a~~~~g~~~~~--sr~~~g~~~~~~~lE~~lA~~~g~e~--al~~~SG~~An~  119 (401)
T d1fc4a_          44 GSHVINFCANNYLGLANHPDLIAAAKAGMDSHGFGMAS--VRFICGTQDSHKELEQKLAAFLGMED--AILYSSCFDANG  119 (401)
T ss_dssp             SCEEEECCCSCTTSCTTCHHHHHHHHHHHHHHCSCCCS--CHHHHCCBHHHHHHHHHHHHHHTCSE--EEEESCHHHHHH
T ss_pred             CCEEEEEEccccccccCCHHHHHHHHHHHHHhCCCccc--ceeeccCcHHHHHHHHHHHHhhcCCc--eEEecchhhhhH
Confidence            345888887763    3799999999998764322222  22223334788999999999999865  999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC------CCceEEEEeccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR------PDTGLISVMAVN  206 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~------~~t~li~i~~~~  206 (457)
                      .++.++.    ++++.|+++...|.+...++...   +.++..++..     |+++++++++      ..+.+|++++++
T Consensus       120 ~~i~~l~----~~~d~i~~d~~~h~s~~~G~~~~---~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~  187 (401)
T d1fc4a_         120 GLFETLL----GAEDAIISDALNHASIIDGVRLC---KAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVF  187 (401)
T ss_dssp             TTHHHHC----CTTCEEEEETTCCHHHHHHHHTS---CSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEE
T ss_pred             HHHHHhc----CCCcEEEeCCcchHHHHcccccc---CceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCC
Confidence            9999988    89999999999999999887765   8888877755     6777766553      345799999999


Q ss_pred             cccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccC--------CCCcccEEEeccccccCCCCceEEEEecCCCccc
Q 040741          207 NEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDV--------EKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRV  278 (457)
Q Consensus       207 ~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~--------~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~  278 (457)
                      ++.|.+.|+++|.++|++||+++++|++|++|.+....        ....+|++++|++|.+|..+.|++..+++.++.+
T Consensus       188 s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~Gg~v~g~~~~~~~l  267 (401)
T d1fc4a_         188 SMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWL  267 (401)
T ss_dssp             TTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHH
T ss_pred             CCCCchhhhhHHHHHHhhcCcEEEehhhhccccccCCCCccchhccCCCCCeEEEeecccccccCCcccccCCHHHHHHH
Confidence            99999999999999999999999999999987653211        1125899999999976433248888887665555


Q ss_pred             cccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          279 EPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       279 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      .....+.     ..+..+++....+...+++.... .++++++.+++.+++++.+.+  .++.+.+..    .+++.+.+
T Consensus       268 ~~~~~~~-----~~s~~l~p~~~~aa~~~l~~~~~-~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~----~pIv~v~~  335 (401)
T d1fc4a_         268 RQRSRPY-----LFSNSLAPAIVAASIKVLEMVEA-GSELRDRLWANARQFREQMSA--AGFTLAGAD----HAIIPVML  335 (401)
T ss_dssp             HHHCHHH-----HHSCCCCHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHH--TTCCBCCSS----SSEEEEEE
T ss_pred             HcCChhh-----hhcCCCCHHHHHHHHhhhccccc-CHHHHHHHHHHHHHHHhhhcc--cCCccCCCC----CCEEEEEE
Confidence            4322211     23345666677777667765543 478889999999999999998  355444322    23333444


Q ss_pred             cc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          359 AY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       359 ~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .. .....+...|  +||.+.+-.+.+.                +.+...|||+++..+|+||||+++++|+++.+++.
T Consensus       336 ~~~~~a~~~~~~L~~~Gi~v~~i~~PtV----------------p~g~~~lRi~~~a~hT~edId~~v~al~ev~~~lg  398 (401)
T d1fc4a_         336 GDAVVAQKFARELQKEGIYVTGFFYPVV----------------PKGQARIRTQMSAAHTPEQITRAVEAFTRIGKQLG  398 (401)
T ss_dssp             ECHHHHHHHHHHHHHTTEECCEECTTSS----------------CTTCEEEEEECCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCceEEeECCCCC----------------CCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHhC
Confidence            32 1223455555  6887764322211                12336799999999999999999999999998864

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.3e-28  Score=233.93  Aligned_cols=329  Identities=16%  Similarity=0.159  Sum_probs=245.0

Q ss_pred             CcEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~  132 (457)
                      +.-|+|+.++..    -+|++.++..+.++.+.-.+.+  .+.-....+.+.++|+.||+++|.+.  +++.++|+.|+.
T Consensus        37 g~~~l~f~s~dYLGl~~~p~v~~a~~~a~~~~G~~~~~--sr~~~g~~~~~~~lE~~LA~~~g~e~--al~~~SG~~an~  112 (383)
T d1bs0a_          37 DRQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGG--SGHVSGYSVVHQALEEELAEWLGYSR--ALLFISGFAANQ  112 (383)
T ss_dssp             TEEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTTCCCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHH
T ss_pred             CeEEEEEEcccccccCCCHHHHHHHHHHHHHhCCCCCc--cccccCcchHHHHHHHHHHHhcCCCc--eEEecccchhhH
Confidence            345788888763    3789999999998874222221  12222334789999999999999865  899999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---CCceEEEEecccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---PDTGLISVMAVNNEI  209 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---~~t~li~i~~~~~~~  209 (457)
                      .++.++.    .+++.|+++...|.+...+++..   +.+++.++.+     |++++++.+.   +++.+|+++.++++.
T Consensus       113 ~~i~al~----~~~d~v~~d~~~h~si~~g~~~~---~~~~~~~~hn-----d~~~le~~l~~~~~~~~~vv~e~v~s~~  180 (383)
T d1bs0a_         113 AVIAAMM----AKEDRIAADRLSHASLLEAASLS---PSQLRRFAHN-----DVTHLARLLASPCPGQQMVVTEGVFSMD  180 (383)
T ss_dssp             HHHHHHC----CTTCEEEEETTCCHHHHHHHHTS---SSEEEEECTT-----CHHHHHHHHHSCCSSCEEEEEESBCTTT
T ss_pred             HHHHhhc----CCCceEEeeccccHHHhhccccC---CCcceEecch-----HHHHHHHHhcccCCCceEEEecCCCCCC
Confidence            9999998    89999999999999999987665   8888888876     8888888763   567899999999999


Q ss_pred             ccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC------CCcccEEEeccccccCCCCceEEEEecCCCcccccccc
Q 040741          210 GVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE------KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN  283 (457)
Q Consensus       210 G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~------~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~  283 (457)
                      |.+.|+++|.++|++||+++++|+||++|....+..      ....|+++.+++|.+|..| |++..+.+..+.++....
T Consensus       181 G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G-g~v~~~~~~~~~l~~~~~  259 (383)
T d1bs0a_         181 GDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG-AAVLCSSTVADYLLQFAR  259 (383)
T ss_dssp             CCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC-EEEEECHHHHHHHHHHCH
T ss_pred             CcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc-cccccchhHHHHHHhhch
Confidence            999999999999999999999999999886643321      2246788899999999886 888888765555543222


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc-
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-  361 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  361 (457)
                      ..     ..+...+++.++++.++++..+. ..+...++..++..++++.|.+  .++.+.....    +++.+.+... 
T Consensus       260 ~~-----~~s~~~~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~--~g~~~~~~~s----~Ii~v~~g~~~  328 (383)
T d1bs0a_         260 HL-----IYSTSMPPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQD--LPFTLADSCS----AIQPLIVGDNS  328 (383)
T ss_dssp             HH-----HSSBCCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTT--SSCEECSCCS----SBCCEEEESHH
T ss_pred             hh-----hhcccccchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh--cCCccCCCCC----CEEEEEECCHH
Confidence            11     23335666777777788877765 4678888999999999999998  4566654322    2222233221 


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ....+...|  +||.+.+..+.+.                +.+...|||+++..+|+||||+++++|..+
T Consensus       329 ~a~~~~~~L~~~Gi~v~~~~~PtV----------------p~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         329 RALQLAEKLRQQGCWVTAIRPPTV----------------PAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HHHHHHHHHHHTTEECCEECTTSS----------------CTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCceEEEEcCCCC----------------CCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            223455555  6888765433221                123468999999999999999999998764

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.96  E-value=1.2e-27  Score=232.07  Aligned_cols=332  Identities=17%  Similarity=0.102  Sum_probs=244.0

Q ss_pred             CCcEEecCCCCCC----CCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATTP----VDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~~----~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~  131 (457)
                      ++.-.++|.++..    -+|+++++..+.++.+ |...+ ..+.-.+..+.+.++|+.+|+++|.+.  +++.++|..|+
T Consensus        43 ~~~~~~~FsSndYLGL~~~p~v~~a~~~al~~y-G~gs~-~Sr~~~G~~~~h~~LE~~lA~~~g~e~--all~~sG~~An  118 (396)
T d2bwna1          43 GKQDITVWCGNDYLGMGQHPVVLAAMHEALEAV-GAGSG-GTRNISGTTAYHRRLEAEIAGLHQKEA--ALVFSSAYNAN  118 (396)
T ss_dssp             CEEEEEECSCSCTTSGGGCHHHHHHHHHHHHHH-CSCCC-SBTTTBCCBHHHHHHHHHHHHHTTCSE--EEEESCHHHHH
T ss_pred             CCeEEEEEEcccccCcCCCHHHHHHHHHHHHHh-CCCcc-ccccccCCchHHHHHHHHHHHHhCCCc--eeeeecchHHH
Confidence            3445777777774    4689999999998764 32121 222222334789999999999999875  88888899999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC----CCceEEEEecccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR----PDTGLISVMAVNN  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~----~~t~li~i~~~~~  207 (457)
                      ..++.++...  .+++.|+.+...|.+..++++..   ++++..++++     |++++++.++    .++++|+++.+.+
T Consensus       119 ~~~i~~l~~~--~~~d~i~~D~~~Hasi~~g~~ls---~a~~~~f~Hn-----d~~~l~~l~~~~~~~~~~~iv~egvyS  188 (396)
T d2bwna1         119 DATLSTLRVL--FPGLIIYSDSLNHASMIEGIKRN---AGPKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYS  188 (396)
T ss_dssp             HHHHHHHHHH--STTCEEEEETTCCHHHHHHHHHS---CCCEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCT
T ss_pred             HHHHHHHhcc--cCCCceeehhhhhhccchhhhcc---ccCceEeecc-----hHHHhhhHHhhhcccCceeEEEEeecc
Confidence            9989887421  68899999999999999998776   8899888877     7777766653    3467999999999


Q ss_pred             ccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCC--------CCcccEEEeccccccCCCCceEEEEecCCCcccc
Q 040741          208 EIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVE--------KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVE  279 (457)
Q Consensus       208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~--------~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~  279 (457)
                      +.|.+.|+++|.++|++||+++++|+||++|.......        ...+|++++|++|.||..| |+++++++.++.+.
T Consensus       189 mdGd~apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G-g~v~~~~~~i~~l~  267 (396)
T d2bwna1         189 MDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG-GYIAASARMVDAVR  267 (396)
T ss_dssp             TTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC-EEEEECHHHHHHHH
T ss_pred             CcccccccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc-cccchhHHHHHHHH
Confidence            99999999999999999999999999999987642211        1247999999999999987 89998877666554


Q ss_pred             ccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE
Q 040741          280 PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF  358 (457)
Q Consensus       280 ~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  358 (457)
                      ....+.     ..++.++++.+++..++++.+.. ..++.+++.+.+.++++..+.+  .++.+...+    .+++.+.+
T Consensus       268 ~~~~~~-----ifStalpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~--~g~~~~~~~----spIvpv~i  336 (396)
T d2bwna1         268 SYAPGF-----IFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKA--LGMPIIDHG----SHIVPVVI  336 (396)
T ss_dssp             HHCHHH-----HTSBCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--HTCCBCCCS----SSCEEEEC
T ss_pred             hhcchh-----hhcccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh--cCCCcCCCC----CCEEEEEe
Confidence            332211     23446677777778888887764 3566778888899999999988  355544322    23333444


Q ss_pred             ccc-cchHHHhc-c--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          359 AYV-EGESLLMG-L--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       359 ~~~-~~~~~~~~-l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                      ... ....+... |  +||.+.+-.+.+.                +.+..+|||+++..+|+||||+++++|++.
T Consensus       337 g~~~~~~~~a~~lL~e~Gi~v~~i~~PtV----------------p~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         337 GDPVHTKAVSDMLLSDYGVYVQPINFPTV----------------PRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             CCHHHHHHHHHHHHHHHCEECCEECTTTS----------------CTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCEEEEEECCCcC----------------CCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            321 12334444 3  4887765443221                123468999999999999999999999875

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.96  E-value=3e-27  Score=233.56  Aligned_cols=337  Identities=17%  Similarity=0.122  Sum_probs=229.2

Q ss_pred             CCcEEecCCCCC-----CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh------------CCCC
Q 040741           56 GRPLYLDMQATT-----PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI------------GASP  118 (457)
Q Consensus        56 ~~~i~l~~~~~~-----~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~------------g~~~  118 (457)
                      .+.|.|..+.+.     ++++.+++++.+.+.....+        +|.......++|+.+++++            ++++
T Consensus        30 ~~vI~L~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~~--------~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~  101 (412)
T d1bw0a_          30 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQECN--------GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVK  101 (412)
T ss_dssp             SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCSS--------SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred             CCcEECcCCCCCCCCCccccHHHHHHHHHHhhCCCCC--------CCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCC
Confidence            345677655432     45678888888876532111        1111122344555555543            2567


Q ss_pred             CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCC
Q 040741          119 KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPD  196 (457)
Q Consensus       119 ~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~  196 (457)
                      ++|++|+|+++|+.+++.+++    ++||.|++..+.|+.+...++..   |.+++.++.+  .+...|+++++++++++
T Consensus       102 ~~I~it~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~~---G~~~~~v~~~~~~~~~~~~~~l~~~~~~~  174 (412)
T d1bw0a_         102 DNVVLCSGGSHGILMAITAIC----DAGDYALVPQPGFPHYETVCKAY---GIGMHFYNCRPENDWEADLDEIRRLKDDK  174 (412)
T ss_dssp             GGEEEESHHHHHHHHHHHHHC----CTTCEEEEEESCCTHHHHHHHHT---TCEEEEEEEEGGGTTEECHHHHHHHCCTT
T ss_pred             CeEEEecccccchhhhhhhhh----ccccceeeeeccchhhhhhhhcc---CccccccccccccccchhhHHHHhhhhcc
Confidence            789999999999999999998    89999999999999998777666   9999999886  34568999999999999


Q ss_pred             ceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCC----cc-------cCCCCcccEEEeccccccCC
Q 040741          197 TGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKI----PV-------DVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       197 t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~----~~-------~~~~~~~Di~~~s~~K~~g~  262 (457)
                      ++++++++++||||.+.+   +++|+++|++|+++|++|++|+.-..    +.       +......-+++.|++|.+|.
T Consensus       175 ~~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~  254 (412)
T d1bw0a_         175 TKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVV  254 (412)
T ss_dssp             EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSC
T ss_pred             ccccccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCcc
Confidence            999999999999999987   67788899999999999999973211    11       11111223667789997765


Q ss_pred             CC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          263 KG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       263 ~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                      +|  +|++++.+............. .......+..+..+..+...+.....+.+.+..++++++++.+.+.|.+ .+++
T Consensus       255 ~G~RvG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~-~~g~  332 (412)
T d1bw0a_         255 PGWRLGWLLYVDPHGNGPSFLEGLK-RVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE-CIGL  332 (412)
T ss_dssp             GGGCCEEEEEECTTCSCHHHHHHHH-HHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT-STTE
T ss_pred             CCCCcccccccchhhcchhhhhhhc-cccccccCCchhhhhhcccccccccccccccccchhHHHHHHHHHHHHH-hcCc
Confidence            55  999999876544321111000 0000111122222222222222222345778888999999999999988 7888


Q ss_pred             EEeCCCCCcccceEEEEEcc------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecC
Q 040741          341 VVNGSMERRYIGNLNLSFAY------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIG  411 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~  411 (457)
                      .+..+. .  +.++...++.      .++.++...|   .||.+.+|..|..                   .++|||++.
T Consensus       333 ~~~~p~-g--g~~l~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-------------------~g~iRis~~  390 (412)
T d1bw0a_         333 APTMPR-G--AMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA-------------------PGFTRLTTT  390 (412)
T ss_dssp             EECCCC-B--TTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC
T ss_pred             eecCCC-C--ceEEEEeCChhhcCCCCCHHHHHHHHHHhCCEEEEeccccCC-------------------CCeEEEEEc
Confidence            876532 2  3334444431      1345666655   4999999975532                   279999986


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q 040741          412 RFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       412 ~~~t~edid~~~~~l~~~~~~~  433 (457)
                        .+++++++++++|++++++.
T Consensus       391 --~~~e~l~eal~Rl~~~l~~~  410 (412)
T d1bw0a_         391 --RPVEVYREAVERIKAFCQRH  410 (412)
T ss_dssp             --SCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHHHHHHHhc
Confidence              47899999999999998875

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.1e-26  Score=225.39  Aligned_cols=326  Identities=9%  Similarity=0.095  Sum_probs=224.9

Q ss_pred             CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHHHHHHHHhhhhhcC
Q 040741           68 PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESNNVSIKGVMHFYKD  144 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~~~al~~~~~~~~~  144 (457)
                      +.|+.+.+++.+.+... ++++..    .|   .+..+.+.+.+++.+|.  ++++|++|+|+++++..++.++.    +
T Consensus        12 ~~p~~i~eal~~~~~~~~~~Y~~~----~g---~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l~----~   80 (361)
T d1d2fa_          12 ATAPCIIEALNQRLMHGVFGYSRW----KN---DEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQWS----E   80 (361)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCCCCS----CC---HHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHSS----C
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCC----CC---HHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhcc----c
Confidence            67899999999987542 222111    11   23455566666666675  57789999999999999999998    8


Q ss_pred             CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcC-CCceEEEEeccccccccccC---hHH
Q 040741          145 KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQP---MEE  217 (457)
Q Consensus       145 ~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~---l~~  217 (457)
                      +||+|+++.+.|+.+...++..   |.+++.++.+   .++.+|++++++.+. ++++++++++++||||.+.+   +++
T Consensus        81 ~gd~Vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~p~NPTG~~~s~~~~~~  157 (361)
T d1d2fa_          81 TGEGVVIHTPAYDAFYKAIEGN---QRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTGKVWTCDELEI  157 (361)
T ss_dssp             TTCEEEEEESCCHHHHHHHHHT---TCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTCCCCCTTHHHH
T ss_pred             cccccccccccccchhHHHHhh---cceEEeecccccccccccccccchhhcccCCceeEEecccccccccccchhhhhh
Confidence            9999999999999998777665   8888887764   334689999999884 58899999999999999987   778


Q ss_pred             HHHHHHhcCCcEEEehhhhcCCC----cccC--CCCcccEEEeccccccCCC--CceEEEEecCCC-ccccccccCCccc
Q 040741          218 IGQICKEFKIPFHTDAAQALGKI----PVDV--EKWNVSLMSLSGHKIYGPK--GVGALYMRRRPR-IRVEPLINGGGQE  288 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g~~----~~~~--~~~~~Di~~~s~~K~~g~~--G~G~l~~~~~~~-~~~~~~~~~~~~~  288 (457)
                      |+++|+++|+++|+|++|+....    ....  ...+..+++.|++|.+|.+  ++|++++..... ..........   
T Consensus       158 i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~~~~~~~~~~~~~~---  234 (361)
T d1d2fa_         158 MADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGR---  234 (361)
T ss_dssp             HHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEEEECSHHHHTCGGGCCEEEEECSHHHHHHHHHHHHTT---
T ss_pred             hhhhhhhhheeeeecccccccccccccccccccccccccccccccccccccccccceeeecchhHHHHHHhhhcccc---
Confidence            99999999999999999974221    1111  1123357888999966533  478887764311 1111111110   


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchHH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGESL  366 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  366 (457)
                        ....+++...+.+...+.....+..++.....+++++.+.+.+.+..+++.+..+ +.  ..++.+.++  +.++.++
T Consensus       235 --~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~p-~g--g~~~~~~l~~~~~~~~~~  309 (361)
T d1d2fa_         235 --DGLSSPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIP-QS--TYLAWLDLRPLNIDDNAL  309 (361)
T ss_dssp             --SCCCSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCC-SB--CSEEEEECGGGCCCHHHH
T ss_pred             --cccccchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhhccccccccc-Cc--eeEEEEEccCCCCCHHHH
Confidence              1112444444444444444434446677777777787777777664666655443 22  233444553  4567777


Q ss_pred             Hhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       367 ~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ...|   .||.+.+|..+..                 .+.++|||+++  .++|++++++++|+++++++|
T Consensus       310 ~~~Ll~~~gv~v~pG~~F~~-----------------~~~~~vRis~~--~~~e~l~~al~rl~~~l~~lr  361 (361)
T d1d2fa_         310 QKALIEQEKVAIMPGYTYGE-----------------EGRGFVRLNAG--CPRSKLEKGVAGLINAIRAVR  361 (361)
T ss_dssp             HHHHHHTTCEECEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCEEEEeccccCC-----------------CCCCEEEEEEc--CCHHHHHHHHHHHHHHHHhcC
Confidence            7765   4999999975532                 13378999986  478999999999999999875

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=4.2e-27  Score=230.76  Aligned_cols=339  Identities=13%  Similarity=0.061  Sum_probs=234.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESNN  132 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~~  132 (457)
                      .+.|.|..+.+. +.|+.+.+++.+......++|..      .+..+..+.+.+.+.+..|.  +++++++|+|+++++.
T Consensus        28 ~~vi~l~~G~p~~~~p~~~~~al~~~~~~~~~Y~~~------~G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~  101 (389)
T d2gb3a1          28 VRIHHLNIGQPDLKTPEVFFERIYENKPEVVYYSHS------AGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAIL  101 (389)
T ss_dssp             CEEEECSSCCCCSCCCTHHHHHHHHTCCSSCCCCCT------TCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHH
T ss_pred             CCEEECCCCCCCCCCCHHHHHHHHhcCCCCCCCCCC------cCCHHHHHHHHHHHHHhcCCCcccceEEeccccccccc
Confidence            445788777666 57888889888754332222221      11123334444444444454  5788999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC-CCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD-GIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~-~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      +++.+++    ++|+.|++..+.|+.+...+...   |..+..++.+.+ +..+.+.++..+.++++++++++++||||.
T Consensus       102 ~~~~~l~----~~gd~V~i~~P~y~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~  174 (389)
T d2gb3a1         102 FSFAVIA----NPGDEILVLEPFYANYNAFAKIA---GVKLIPVTRRMEEGFAIPQNLESFINERTKGIVLSNPCNPTGV  174 (389)
T ss_dssp             HHHHHHC----CTTCEEEEEESCCTHHHHHHHHH---TCEEEEEECCGGGTSCCCTTGGGGCCTTEEEEEEESSCTTTCC
T ss_pred             ccccccc----cCCCeEEEeCCCCcccccccccc---CccccccccccccccchhhhhhhhcccCccEEEeCCCCccccc
Confidence            9999999    89999999999999998887777   999998888743 445556777888899999999999999999


Q ss_pred             ccC---hHHHHHHHHhcCCcEEEehhhhcCCCc---c--cCCCCcccEEEeccccccCCCC--ceEEEEecCCCcccccc
Q 040741          212 IQP---MEEIGQICKEFKIPFHTDAAQALGKIP---V--DVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPL  281 (457)
Q Consensus       212 ~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~---~--~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~  281 (457)
                      +.+   +++|.++|++|+++||.|+++..-...   .  .....+..+++.|++|.++.+|  +|+++++++.+.+....
T Consensus       175 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~~~~~~  254 (389)
T d2gb3a1         175 VYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELISHAMK  254 (389)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHHHHHHH
T ss_pred             cchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHHHHHhh
Confidence            988   778999999999999999999742221   1  1111234577789999666555  89999876533322211


Q ss_pred             ccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          282 INGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       282 ~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      ..       .....++.....+...++......+++..+.++++++.+.+.|.+ ++...... +..  ..++.+.++..
T Consensus       255 ~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~-p~~--g~~~~~~lp~~  323 (389)
T d2gb3a1         255 LA-------QGRLAPPLLEQIGSVGLLNLDDSFFDFVRETYRERVETVLKKLEE-HGLKRFTK-PSG--AFYITAELPVE  323 (389)
T ss_dssp             HH-------HHSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCCCBCC-CSB--SSEEEEECSSS
T ss_pred             hh-------hccccccccccccccccccccchhcccccccccccchhhhhhhhh-hccccccC-CCc--eEEEEEeCCCC
Confidence            11       111234444444444444333345788888999999999999999 65444333 222  44556666665


Q ss_pred             cchHHHhcc--------cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--------KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       362 ~~~~~~~~l--------~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ++.++...|        +++.+.+|..|..              .+..+.+++||++.  .+++++++++++|+++++++
T Consensus       324 ~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~--------------~~~~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~f  387 (389)
T d2gb3a1         324 DAEEFARWMLTDFNMDGETTMVAPLRGFYL--------------TPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF  387 (389)
T ss_dssp             CHHHHHHHHHHSCCBTTEEEECEEGGGGCS--------------STTTTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhhhCCEEEEeCccccc--------------CCCCCCCEEEEEEc--CCHHHHHHHHHHHHHHHHHh
Confidence            666655543        4788888865432              23344589999986  57899999999999999987


Q ss_pred             H
Q 040741          434 R  434 (457)
Q Consensus       434 ~  434 (457)
                      +
T Consensus       388 ~  388 (389)
T d2gb3a1         388 C  388 (389)
T ss_dssp             H
T ss_pred             h
Confidence            6

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.95  E-value=3.9e-27  Score=231.29  Aligned_cols=337  Identities=14%  Similarity=0.108  Sum_probs=233.6

Q ss_pred             CCcEEecCCCCC----CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChH
Q 040741           56 GRPLYLDMQATT----PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGAT  128 (457)
Q Consensus        56 ~~~i~l~~~~~~----~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T  128 (457)
                      .+.|.|..+.+.    ++|+.+++++.+.+.... +++.      ..+..+..+.+.+.+.+..|.  +++++++|+|++
T Consensus        30 ~~vi~l~~G~P~~~df~~p~~i~~a~~~a~~~~~~~Y~~------~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~  103 (395)
T d1xi9a_          30 IKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGHNYYGD------SEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVT  103 (395)
T ss_dssp             CCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTCCSCCC------TTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHH
T ss_pred             CCeEECCCCCCCCCCCCCCHHHHHHHHHHHhcCCCCCCC------CCCCHHHHHHHHHhhhhcccccccccccccccccc
Confidence            455788776542    578899999999886421 1111      111223444445555555555  567899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccc
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVN  206 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~  206 (457)
                      +++.+++.++.    ++|+.|++..+.|+.+...++.+   |.+++.++..  .++.+|++++++++.+++++++++++|
T Consensus       104 ~~~~~~~~~~~----~~Gd~vlv~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~v~l~~P~  176 (395)
T d1xi9a_         104 EALQLIFGALL----DPGDEILVPGPSYPPYTGLVKFY---GGKPVEYRTIEEEDWQPDIDDIRKKITDRTKAIAVINPN  176 (395)
T ss_dssp             HHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHHT---TCEEEEEEEEGGGTSEECHHHHHHHCCTTEEEEEEESSC
T ss_pred             hhhhhhhhhhc----CCCCEEEEcCCccccchhhhhhc---CCEEEEEeccccccccchHHHHHHhhcccccEEEecCCC
Confidence            99999999998    89999999999999888877776   9999888754  456789999999999999999999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc------ccCCCCcccEEEeccccccCCCC--ceEEEEecCC-
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP------VDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRP-  274 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~------~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~-  274 (457)
                      ||||.+.+   +++|+++|++|+++++.|+++......      ........-+++.|++|.|+.+|  +|++++.... 
T Consensus       177 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~  256 (395)
T d1xi9a_         177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN  256 (395)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTC
T ss_pred             CCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHH
Confidence            99999988   678999999999999999998742221      11222223477889999877555  8988765421 


Q ss_pred             -CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccce
Q 040741          275 -RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGN  353 (457)
Q Consensus       275 -~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  353 (457)
                       +..+.......   . .....++.....++..++....+.+++..+.++++++.+.+.|.+ ++++.+..+ +.  ..+
T Consensus       257 ~~~~~~~~~~~~---~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~-~~~~~~~~p-~g--g~~  328 (395)
T d1xi9a_         257 KLSEVREAIDRL---A-RIRLCPNTPAQFAAIAGLTGPMDYLKEYMKKLKERRDYIYKRLNE-IPGISTTKP-QG--AFY  328 (395)
T ss_dssp             TTHHHHHHHHHH---H-HHTCCSCSHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHT-STTEECCCC-CB--SSE
T ss_pred             HHHHHHHHHHHh---h-cCCCCcCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCceecCC-Ce--eEE
Confidence             12222111100   0 011233444444444444433345788888899999999999998 777766543 22  333


Q ss_pred             EEEEEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          354 LNLSFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       354 ~~~~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      +.+.++.   .++.++...+   .||.+.+|..|..                 ...+++||++.  .+.|++++++++|+
T Consensus       329 ~~~~l~~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~-----------------~~~~~~Ris~~--~~~e~l~eal~rl~  389 (395)
T d1xi9a_         329 IFPKIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGE-----------------YGAGHFRAVFL--PPIEILEEAMDRFE  389 (395)
T ss_dssp             ECCEECSCSCSSHHHHHHHHHHHHCEECEEGGGGCG-----------------GGTTBEEEECC--SCHHHHHHHHHHHH
T ss_pred             EeEECCCCCCCCHHHHHHHHHHhCCEEEEcChhhCC-----------------CCCCEEEEEec--CCHHHHHHHHHHHH
Confidence            3444532   2445555544   5999999976532                 12378999986  47899999999999


Q ss_pred             HHHHH
Q 040741          428 KQVEK  432 (457)
Q Consensus       428 ~~~~~  432 (457)
                      +++++
T Consensus       390 ~~l~e  394 (395)
T d1xi9a_         390 KFMKE  394 (395)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99874

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.95  E-value=1e-26  Score=228.30  Aligned_cols=336  Identities=10%  Similarity=0.060  Sum_probs=227.3

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhCC--CCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIGA--SPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~--~~~~i~~t~g~T~a~  131 (457)
                      .+.|.|..+.+. ++|+++++++.+.+... ++++.      |  ..+..+.+.+.+++..|.  ++++|++|+|+++++
T Consensus        31 ~~vi~l~~g~pdf~~p~~v~~al~~~~~~~~~~Y~~------g--~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al  102 (394)
T d1c7na_          31 NEVVPLSVADMEFKNPPELIEGLKKYLDETVLGYTG------P--TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAV  102 (394)
T ss_dssp             TTCCCCCSSSCSSCCCHHHHHHHHHHHHHCCCSSBC------C--CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHH
T ss_pred             CCeEEccCCCCCCCCCHHHHHHHHHHHhCCCcCCCC------C--CHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhh
Confidence            456777776666 77899999999988652 22211      1  123333344444444454  677899999999999


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC---CCCCCCHHHHHHhcC-CCceEEEEecccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG---ADGIVNLDELRAAIR-PDTGLISVMAVNN  207 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~---~~~~~d~~~le~~i~-~~t~li~i~~~~~  207 (457)
                      .+++.++.    ++|+.|++..+.|+.........   |...+.++..   ..+.+|.+.++.++. +++++++++++||
T Consensus       103 ~~~~~~~~----~pgd~vi~~~p~~~~~~~~~~~~---g~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~i~l~~P~N  175 (394)
T d1c7na_         103 FNAVREFT----KPGDGVIIITPVYYPFFMAIKNQ---ERKIIECELLEKDGYYTIDFQKLEKLSKDKNNKALLFCSPHN  175 (394)
T ss_dssp             HHHHHHHC----CTTCEEEECSSCCTHHHHHHHTT---TCEEEECCCEEETTEEECCHHHHHHHHTCTTEEEEEEESSBT
T ss_pred             hhhhcccc----ccccccccccCcccchhhHHhhh---hhcccccccccccccccchhhhhhhhhccccceEEEeccccc
Confidence            99999999    99999999999998888776655   8887777654   334578888888774 5799999999999


Q ss_pred             ccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----cc---CC--CCcccEEEeccccccCCCC--ceEEEEecC
Q 040741          208 EIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VD---VE--KWNVSLMSLSGHKIYGPKG--VGALYMRRR  273 (457)
Q Consensus       208 ~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~---~~--~~~~Di~~~s~~K~~g~~G--~G~l~~~~~  273 (457)
                      |||.+.+   +++|+++|++++++||+|++|.--...    ..   ..  ....-+++.|++|.||.+|  +|++++.+.
T Consensus       176 PTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~  255 (394)
T d1c7na_         176 PVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNP  255 (394)
T ss_dssp             TTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCH
T ss_pred             ccceeccHHHhhhhhccccccceeEeccccccccccCCccccchhhhhcccccceeecccccccccccccccccccccCh
Confidence            9999998   667889999999999999999732111    00   00  1124577889999776544  788888764


Q ss_pred             CCc-cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccc
Q 040741          274 PRI-RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIG  352 (457)
Q Consensus       274 ~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~  352 (457)
                      .+. .+......      ......+.....+...+.....+..++..+..++..+.+.+.++...+++.+..+ +.  ..
T Consensus       256 ~i~~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p-~g--~~  326 (394)
T d1c7na_         256 DIRERFTKSRDA------TSGMPFTTLGYKACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI-EG--TY  326 (394)
T ss_dssp             HHHHHHHHHHHH------TTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC-SB--SS
T ss_pred             hhhhhhhhhhhh------ccccccccccchhhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCC-Cc--ee
Confidence            332 22222111      0111222333333333333333346677777777888888887764566655432 22  33


Q ss_pred             eEEEEEcc--ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHH
Q 040741          353 NLNLSFAY--VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTV  427 (457)
Q Consensus       353 ~~~~~~~~--~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~  427 (457)
                      ++.+.++.  .+..++...|   .||.+.+|..+..                 .+.+++||+++  +++|+|++++++|+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~Ll~~~gV~v~pG~~Fg~-----------------~~~~~iRis~~--~~~e~i~eal~rl~  387 (394)
T d1c7na_         327 LQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGD-----------------GGIGFERINLA--APSSVIQESLERLN  387 (394)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCG-----------------GGTTEEEEECC--SCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhCCEEEEcchhhCC-----------------CCCCEEEEEEe--CCHHHHHHHHHHHH
Confidence            44555653  4666776665   3899999976532                 22379999986  47899999999999


Q ss_pred             HHHHHHH
Q 040741          428 KQVEKLR  434 (457)
Q Consensus       428 ~~~~~~~  434 (457)
                      ++++++|
T Consensus       388 ~~l~~Lk  394 (394)
T d1c7na_         388 KALKDLK  394 (394)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9999875

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=7.5e-26  Score=225.60  Aligned_cols=349  Identities=15%  Similarity=0.128  Sum_probs=242.3

Q ss_pred             CCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCC---------CcEEEeCC
Q 040741           56 GRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASP---------KEIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~---------~~i~~t~g  126 (457)
                      .++-|+++-.++..++.++-.+.....+    +....+..+......-.++.+++++++|.+.         ...++|+|
T Consensus        72 ~~P~f~~~~~~~~~~~~~l~~~~~~~~n----~n~~~~~~sp~~t~iE~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~G  147 (476)
T d1js3a_          72 HSPYFFAYFPTASSYPAMLADMLCGAIG----CIGFSWAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGS  147 (476)
T ss_dssp             TSTTBCSSSCCCCCHHHHHHHHHHHHHC----CCCSSGGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESC
T ss_pred             CCCCeeEeCCCCCCHHHHHHHHHHHhhc----ccccchhhhhhHHHHHHHHHHHHHHHhCCCcccccCCCCCCCceECCc
Confidence            4556888776677777777666555442    2223445555666777779999999999853         24799999


Q ss_pred             hHHHHHHHHHHhhhhhc------C---------CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHH
Q 040741          127 ATESNNVSIKGVMHFYK------D---------KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~------~---------~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~  191 (457)
                      ||+|+..++.+.+....      .         +.-.+++++..|+|+..++..+   |..+..++++.++.+|+++|++
T Consensus       148 gs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~l---Gl~~~~v~~d~~~~md~~~L~~  224 (476)
T d1js3a_         148 ASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIG---GVKLKAIPSDGKFAMRASALQE  224 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHH---TCEEEEECCCTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhc---CceEEEeccCCCCCcCHHHHHH
Confidence            99999999987664221      0         1235788999999999999998   9999999999999999999999


Q ss_pred             hcCCC------ceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCC------CcccEEEecccc-
Q 040741          192 AIRPD------TGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEK------WNVSLMSLSGHK-  258 (457)
Q Consensus       192 ~i~~~------t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~------~~~Di~~~s~~K-  258 (457)
                      +|+++      +.+|+.+..++.+|.+.|+++|+++|++||+++|+|+|++.......-..      ..+|.+++++|| 
T Consensus       225 ~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~  304 (476)
T d1js3a_         225 ALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKW  304 (476)
T ss_dssp             HHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHH
T ss_pred             HHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEecccchhhhhhcchhhhhcCCcccceeeecCccc
Confidence            99753      45788888999999999999999999999999999999987654432211      147999999999 


Q ss_pred             ccCCCCceEEEEecCCCc-cc---cc-ccc----CCcccccc----ccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHHH
Q 040741          259 IYGPKGVGALYMRRRPRI-RV---EP-LIN----GGGQERGI----RSGTLPTPLIVGFGSACEI-AKKEMDYDHKRITA  324 (457)
Q Consensus       259 ~~g~~G~G~l~~~~~~~~-~~---~~-~~~----~~~~~~~~----~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~~  324 (457)
                      ++.|.++|++++++.... ..   .+ +..    +.+.....    ..++-....+ .+..+++. ..+++.++.++..+
T Consensus       305 l~~P~~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~al-~lw~~l~~~G~~g~~~~i~~~~~  383 (476)
T d1js3a_         305 LLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITDYRHWQLPLGRRFRSL-KMWFVFRMYGVKGLQAYIRKHVQ  383 (476)
T ss_dssp             SSCCSSCEEEEESCHHHHHGGGC------------CCSCCCGGGSSSCSCCCCTHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCcceeecccchHHHHHHHhcChhhhccccccccccccccccccccchhhHHH-HHHHHHHHHhHhHHHHHHHHHHH
Confidence            566889999999864111 00   00 000    00000000    0112222222 23334443 34579999999999


Q ss_pred             HHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc--hHHHhcccCeEecccC-ccCCCCCChhHHHHHcCCCccC
Q 040741          325 LHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG--ESLLMGLKEVAVSSGS-ACTSASLEPSYVLRALGVDEDM  401 (457)
Q Consensus       325 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~i~~~~g~-~~~~~~~~~~~~l~~~g~~~~~  401 (457)
                      +++++.+.|++ .|++++..++.   .+++.|++...+.  ..+.+.+    ...|. ++++.              .-.
T Consensus       384 lA~~l~~~l~~-~~~fel~~~p~---l~iV~Fr~~~~d~~n~~l~~~l----~~~G~~~~s~t--------------~~~  441 (476)
T d1js3a_         384 LSHEFEAFVLQ-DPRFEVCAEVT---LGLVCFRLKGSDGLNEALLERI----NSARKIHLVPC--------------RLR  441 (476)
T ss_dssp             HHHHHHHHHHH-CTTEEECSCCC---SSEEEEEESSCHHHHHHHHHHH----HHHTSCBCEEE--------------EET
T ss_pred             HHHHHHHHHhc-CCCeEEECCCc---eEEEEEEccCChHHHHHHHHHH----HhcCCEEEeee--------------eEC
Confidence            99999999999 89999987654   5667777754322  2333433    11221 12211              111


Q ss_pred             CCCeEEEecC-CCCCHHHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGIG-RFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       402 ~~~~iRi~~~-~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      ++..+|+++. ..++++|||.+++.|++..+++-
T Consensus       442 g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~~ll  475 (476)
T d1js3a_         442 GQFVLRFAICSRKVESGHVRLAWEHIRGLAAELL  475 (476)
T ss_dssp             TEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence            2358999986 56889999999999999998763

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1e-26  Score=226.86  Aligned_cols=327  Identities=15%  Similarity=0.124  Sum_probs=229.4

Q ss_pred             CCCcEEecCCCCC-CCCHHHHHHHHHHHhhc-cCCCCCCccchhhhHHHHHHHHHHHHHHHhC--CCCCcEEEeCChHHH
Q 040741           55 AGRPLYLDMQATT-PVDPRVLDAMLPFYLSR-YGNPHSRTHLFGWESEVAVETARSQIADLIG--ASPKEIIFTSGATES  130 (457)
Q Consensus        55 ~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g--~~~~~i~~t~g~T~a  130 (457)
                      +.+.|.|..+.+. ++|+.+++++.+.+.+. .+++.      ..+..+..+.+.+.+.+..|  .+++++++|+|+++|
T Consensus        27 G~~vI~l~~G~p~~~~p~~i~~~~~~~~~~~~~~Y~~------~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~a  100 (375)
T d1o4sa_          27 GEDVINLTAGEPDFPTPEPVVEEAVRFLQKGEVKYTD------PRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA  100 (375)
T ss_dssp             TCCCEECCCSSCSSCCCHHHHHHHHHHHTTCCCCCCC------TTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred             CCCeEECCCcCCCCCCCHHHHHHHHHHHhcCCcCCCC------CcCCHHHHHHHHhhhhhccccccccccccccCcHHHH
Confidence            3456777777666 67899999999987542 11111      11112333444444444444  457789999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcCCCceEEEEeccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIRPDTGLISVMAVNNE  208 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~~~t~li~i~~~~~~  208 (457)
                      +.+++.+++    ++|+.|++..+.|+.+.......   |..+..++..  .++.+|.+.++....++++++++++++||
T Consensus       101 l~~~~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~nP~NP  173 (375)
T d1o4sa_         101 LFNAFMALL----DPGDEVIVFSPVWVSYIPQIILA---GGTVNVVETFMSKNFQPSLEEVEGLLVGKTKAVLINSPNNP  173 (375)
T ss_dssp             HHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCGGGTTCCCHHHHHHTCCTTEEEEEEESSCTT
T ss_pred             HHHHHHHHh----CCCCEEEEccCccccchhhhhcc---ccccccccccccccccchhHHHHHhhccCccEEEEeCCCCC
Confidence            999999999    89999999999999998776665   8888877766  45678899999999999999999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc-------cCCCCcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV-------DVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~-------~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      ||.+.+   +++|+++|++|+++|+.|+++.......       .....+.-+++.|++|.+|.+|  +|+++..++.++
T Consensus       174 TG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~~  253 (375)
T d1o4sa_         174 TGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVAT  253 (375)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHHH
T ss_pred             ccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccchh
Confidence            999988   6678888999999999999987532211       1223345688999999877554  999999876555


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      .+.......       ....+.....   .+............+.+++..+.+.+.|++  .++.+..+ +.  +.++.+
T Consensus       254 ~~~~~~~~~-------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~~~l~~--~g~~~~~p-~g--g~f~~~  318 (375)
T d1o4sa_         254 AVSKIQSHT-------TSCINTVAQY---AALKALEVDNSYMVQTFKERKNFVVERLKK--MGVKFVEP-EG--AFYLFF  318 (375)
T ss_dssp             HHHHHHHHH-------TCSCCHHHHH---HHHHHTTCCCHHHHHHHHHHHHHHHHHHHH--TTCCCCCC-SB--SSEEEE
T ss_pred             hhhhhhccc-------cccccccchh---hhhhhcccchhhhHHHHHHHHHHHHHHHHh--cCceEecC-Cc--cEEEEE
Confidence            443322211       1122222211   222233334667777888889999999988  47766543 22  334455


Q ss_pred             EEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          357 SFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       357 ~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                      .++. ++.++...+   +||.+.+|..|..                   .++|||+++  .++|++++++++|+++++
T Consensus       319 ~~~~-~~~~~~~~ll~~~gV~v~pG~~F~~-------------------~g~iRis~~--~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         319 KVRG-DDVKFCERLLEEKKVALVPGSAFLK-------------------PGFVRLSFA--TSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             ECSS-CHHHHHHHHHHHHCEECEEGGGGTC-------------------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred             ECCC-CHHHHHHHHHHhCCEEEEEccccCC-------------------CCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence            5554 344555543   5999999976532                   279999996  478999999999999875

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.94  E-value=1e-25  Score=218.47  Aligned_cols=341  Identities=11%  Similarity=0.075  Sum_probs=232.6

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHH-H
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNN-V  133 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~-~  133 (457)
                      .|.-.+|+..+|++|+++|.+.+.++.+.+.+   -.|+ +..+.+.++++++.|+++++++.+ +++|++|++.+++ +
T Consensus         4 ~~~F~pGP~~vp~~V~eam~~~~~~~~~~~~~~~~~sHR-s~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea   82 (361)
T d2c0ra1           4 AYNFNAGPAALPLEVLERAQAEFVDYQHTGMSIMEMSHR-GAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAM   82 (361)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHH
T ss_pred             CcccCCCCcCCCHHHHHHHHHHHhhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHH
Confidence            36456788899999999999988764433332   1232 567779999999999999999654 6888888766654 4


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      ++..+.    .+++.+++....+ ........++..|..+..++.+....++++++++.+..++    +.+++|.+|...
T Consensus        83 ~~~~l~----~~~~~~l~~~~g~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~tg~~~  153 (361)
T d2c0ra1          83 IPMNFL----KEGQTANYVMTGS-WASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQDN----AAYLHLTSNETI  153 (361)
T ss_dssp             HHHHHC----CTTCEEEEEECSH-HHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCCTT----EEEEEEESEETT
T ss_pred             HHhccc----cCCCceEEEeech-hhhhhhhhhhhcCceeeeeccccccccchhhhhhhcccCc----ceEEEEecccce
Confidence            444444    6777776544222 2223344556779999999988888889999988877665    234556799999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCc-c----c
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGG-Q----E  288 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~-~----~  288 (457)
                      |+++|.++|+++|+++++|+++++|..++++.++  |+.+++++|.++++|.+++++..+...+..+...... .    .
T Consensus       154 ~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~--di~~~s~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (361)
T d2c0ra1         154 EGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF--GLVYAGAQKNLGPSGVTVVIVREDLVAESPKHLPTMLRYDTYVK  231 (361)
T ss_dssp             TTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC--SEEEEETTTTTCCSSCEEEEEEGGGSSSCCTTSCGGGCHHHHHH
T ss_pred             ecceEEEeeccCCceEEEEeeccccccccccccc--eeEEEecccccccccCcEEEEEhHHhhhCccccccccccccccc
Confidence            9999999999999999999999999999999875  5555677897776655566555544443332222111 0    0


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cccchH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKK--EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YVEGES  365 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  365 (457)
                      ......++++.....+..++.....  .......+.+..+..+................++.+....+.+.++ +.+..+
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~~~~~  311 (361)
T d2c0ra1         232 NNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEELEKE  311 (361)
T ss_dssp             TTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHHHHHH
T ss_pred             cccccccccceeeehhhhHHHhhhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcccHHH
Confidence            1112234444444444444443332  3556666666777777666665233444555555555666666654 244566


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +...|  +||.+..|..|.                     +.+||++..+++.|||++++++|++..++
T Consensus       312 ~~~~L~~~GI~~~~G~~~~---------------------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~  359 (361)
T d2c0ra1         312 FVKASEQEGFVGLKGHRSV---------------------GGLRASIYNAVPYESCEALVQFMEHFKRS  359 (361)
T ss_dssp             HHHHHHHTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCEEecCCCcC---------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence            66666  699988885432                     35999999999999999999999997765

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.94  E-value=2.4e-25  Score=215.35  Aligned_cols=318  Identities=16%  Similarity=0.106  Sum_probs=216.9

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      +.|.|..+.+. ++|+.+++++.+.......+|..           ...++++.+++++|+++++|++++|+++++.+++
T Consensus        23 ~~idls~~~np~~~p~~~~~a~~~~~~~~~~Yp~~-----------~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~   91 (355)
T d1lc5a_          23 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPDA-----------DYFHLHQALARHHQVPASWILAGNGETESIFTVA   91 (355)
T ss_dssp             GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCCT-----------TCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHH
T ss_pred             heEEccCCCCCCCCCHHHHHHHHHHHHHhccCCCC-----------ChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHH
Confidence            34555544333 67899999999987654333332           2247899999999999999999999999888766


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ..+.    +++  +++..+.|..+.......   +..+..++++ .++....+++++++.+++++|++++++||||.+++
T Consensus        92 ~~~~----~~~--~~v~~p~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~l~nP~NPtG~~~~  162 (355)
T d1lc5a_          92 SGLK----PRR--AMIVTPGFAEYGRALAQS---GCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPE  162 (355)
T ss_dssp             HHHC----CSE--EEEEESCCTHHHHHHHHT---TCEEEEEECCGGGTTCCCTTHHHHCCTTCCEEEEESSCTTTCCCCC
T ss_pred             hhhc----ccc--ccccCCccceeccccccc---cccceeeeeeccCCccceeeeeeccccccceeeeecccCcccccch
Confidence            6543    333  333445565555444444   8888888886 33333346688888999999999999999999988


Q ss_pred             ---hHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCcccEEEeccccccCCCC--ceEEEEecCCCcc-cccccc
Q 040741          215 ---MEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIR-VEPLIN  283 (457)
Q Consensus       215 ---l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~-~~~~~~  283 (457)
                         +++|.++|++|++++++|+++.-...     .......+..+++.|++|.+|.+|  +|+++++++.... +.....
T Consensus       163 ~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~~~~~~~~~  242 (355)
T d1lc5a_         163 RPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAMARMRRQQM  242 (355)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHHHHHHHHSC
T ss_pred             hhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhhHHHHhhcC
Confidence               66788889999999999999863211     111222345688999999888665  8999987643322 221111


Q ss_pred             CCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccc
Q 040741          284 GGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEG  363 (457)
Q Consensus       284 ~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (457)
                               ..+.+.....++..+++. .+.+.+..+++++..+++.+.|.+ ++++.+....    .+++.+.++. +.
T Consensus       243 ---------~~~~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~p~~----~~f~~~~~~~-~~  306 (355)
T d1lc5a_         243 ---------PWSVNALAALAGEVALQD-SAWQQATWHWLREEGARFYQALCQ-LPLLTVYPGR----ANYLLLRCER-ED  306 (355)
T ss_dssp             ---------TTCSCHHHHHHHHHGGGC-HHHHHHHHHHHHHHHHHHHHHHHT-STTEEECCCS----SSEEEEEESC-TT
T ss_pred             ---------Cccccccccccccccccc-cchhHHHHHHHHHHHHHHHHHHhh-cCCcEECCCC----CEEEEEECCC-CH
Confidence                     123444444444444432 224667778888888999999999 8888875421    3555566653 44


Q ss_pred             hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          364 ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       364 ~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      .++...|  +||.+++|..+..                 ...++|||+++   +++|+++++++|++++
T Consensus       307 ~~~~~~L~~~gv~vr~~~~f~~-----------------~~~~~iRis~~---~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         307 IDLQRRLLTQRILIRSCANYPG-----------------LDSRYYRVAIR---SAAQNERLLAALRNVL  355 (355)
T ss_dssp             CCHHHHHHTTTEECEECTTSTT-----------------CCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCcEEEeCccCCC-----------------CCCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence            5565555  6999988764321                 12379999986   5899999999998863

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.94  E-value=2e-26  Score=230.96  Aligned_cols=326  Identities=11%  Similarity=0.011  Sum_probs=218.9

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHH-HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNV-SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG  179 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~-al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~  179 (457)
                      ..+.++|+.+|+++|++  +++|+++||++.++ ++.+++    ++||+||+++.+|.++.+++..+...+..+...+++
T Consensus        66 ~~i~eae~~~A~~~ga~--~a~f~~~Gtt~~n~a~i~a~~----~~gd~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~~~~~  139 (462)
T d1c4ka2          66 GPAVAAEKHAARVYNAD--KTYFVLGGSSNANNTVTSALV----SNGDLVLFDRNNHKSVYNSALAMAGGRPVYLQTNRN  139 (462)
T ss_dssp             THHHHHHHHHHHHTTCS--EEEEESSHHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHTTTTCCEEEEECEEEC
T ss_pred             HHHHHHHHHHHHHhCCC--eEEEECCchHHHHHHHHHHhc----CCCCeEEecccchHHHHHHHHHHhcCCceeeecccc
Confidence            57889999999999986  48888887766554 466677    899999999999999998877664334444445555


Q ss_pred             CCC--------CCCHH---------HHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc
Q 040741          180 ADG--------IVNLD---------ELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV  242 (457)
Q Consensus       180 ~~~--------~~d~~---------~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~  242 (457)
                      ..|        .++.+         ++++++..++..+++.+.+|..|.+.|+++|+++|++||+++|+|+||+.+....
T Consensus       140 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~l~vD~A~~~~~~~~  219 (462)
T d1c4ka2         140 PYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFI  219 (462)
T ss_dssp             TTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSS
T ss_pred             cccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCEEEEechhhcccccc
Confidence            444        22322         2444556678888888888999999999999999999999999999998765432


Q ss_pred             cC-------------CCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc------ccccccCCCChhHHHH
Q 040741          243 DV-------------EKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ------ERGIRSGTLPTPLIVG  303 (457)
Q Consensus       243 ~~-------------~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~------~~~~~~~t~~~~~~~a  303 (457)
                      +.             ...++|++++|+||.+|+.+.|+++..++...  .+.......      ...+..++++...+.+
T Consensus       220 ~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~t~sp~~~~~as  297 (462)
T d1c4ka2         220 PMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHI--KGQLRYCDHKHFNNSFNLFMSTSPFYPMYAA  297 (462)
T ss_dssp             GGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGG--TTSTTCCCHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred             CcCCcchhhccccccccCCccEEEEecCcccccccceEEEEeccccc--cccchhhhHHHHHHhhhhcccCCchHHHHHH
Confidence            21             12346999999999777655455555543221  111111111      1123456888888888


Q ss_pred             HHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCc----------------------ccceEEEEEcc
Q 040741          304 FGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERR----------------------YIGNLNLSFAY  360 (457)
Q Consensus       304 l~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~  360 (457)
                      +..|..++.. ..++..++..++++++++.+.+ +++..........                      .+......+..
T Consensus       298 l~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (462)
T d1c4ka2         298 LDVNAAMQEGEAGRKLWHDLLITTIEARKKLIK-AGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEG  376 (462)
T ss_dssp             HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHH-TTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhcccccccccccccccchHhhhcccchhccCCcchhccccc
Confidence            8888877654 3677888889999999999988 5554332211100                      00000011111


Q ss_pred             ccch-------HHHhcccCeEecccCccCCCCC--ChhHHHHHcCCCccC-CCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          361 VEGE-------SLLMGLKEVAVSSGSACTSASL--EPSYVLRALGVDEDM-AHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       361 ~~~~-------~~~~~l~~i~~~~g~~~~~~~~--~~~~~l~~~g~~~~~-~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ....       .+.-...++....|..|..+..  +....++..|+..+. ..+.|||.++..+|++|||+++++|++..
T Consensus       377 ~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~aL~ei~  456 (462)
T d1c4ka2         377 YGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLITQLLQLQ  456 (462)
T ss_dssp             CCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred             cCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHHHHHHHH
Confidence            1111       1111125666677777764432  234567788886544 46799999999999999999999999988


Q ss_pred             HHHHh
Q 040741          431 EKLRE  435 (457)
Q Consensus       431 ~~~~~  435 (457)
                      +.+.+
T Consensus       457 r~~~~  461 (462)
T d1c4ka2         457 RLIEE  461 (462)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            77653

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.94  E-value=2.9e-25  Score=219.48  Aligned_cols=339  Identities=16%  Similarity=0.191  Sum_probs=230.6

Q ss_pred             CcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCChHHHHH
Q 040741           57 RPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIFTSGATESNN  132 (457)
Q Consensus        57 ~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~t~g~T~a~~  132 (457)
                      +.|.|..+.+. +.|+.+++++.+.+.+.....+  .|....+..+..+.+.+++++..|.+  + ++|++|+|+++|+.
T Consensus        27 ~~I~L~~G~Pd~~~p~~i~eal~~a~~~~~~~~~--~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~  104 (418)
T d2r5ea1          27 KPLNLGQGFPDYHAPKYALNALAAAANSPDPLAN--QYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALY  104 (418)
T ss_dssp             CCEECSSSCCSSCCCHHHHHHHHHHHTCSCGGGG--SCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHH
T ss_pred             CCEEccCCCCCCCCCHHHHHHHHHHHhCCCccCc--CCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhh
Confidence            45777776665 5678899999998754210000  01111122234444555555556653  3 67999999999999


Q ss_pred             HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC----------CCCCHHHHHHhcCCCceEEEE
Q 040741          133 VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD----------GIVNLDELRAAIRPDTGLISV  202 (457)
Q Consensus       133 ~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~----------~~~d~~~le~~i~~~t~li~i  202 (457)
                      +++.+++    ++|+.|+++.+.|+.+...+...   |.+++.++.+.+          ...+.++++++...+++++++
T Consensus       105 ~~~~~l~----~~gd~vlv~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  177 (418)
T d2r5ea1         105 ATIQGHV----DEGDEVIIIEPFFDCYEPMVKAA---GGIPRFIPLKPNKTGGTISSADWVLDNNELEALFNEKTKMIII  177 (418)
T ss_dssp             HHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCCTTEEEEEE
T ss_pred             hhhhhcc----ccccceeccccccchhhHHHHHc---CCeEEEEEecccccccchhhhhhhhhHHHHhhhhhccccceec
Confidence            9999999    89999999999999999888777   999999887633          246788999999999999999


Q ss_pred             eccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc-------ccCC-CCcccEEEeccccccCCCC--ceEEE
Q 040741          203 MAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP-------VDVE-KWNVSLMSLSGHKIYGPKG--VGALY  269 (457)
Q Consensus       203 ~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~-------~~~~-~~~~Di~~~s~~K~~g~~G--~G~l~  269 (457)
                      +++|||||.+.+   +++|+++|++||++||.|+++......       .... ....-+++.|++|.++.+|  +|+++
T Consensus       178 ~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~~~  257 (418)
T d2r5ea1         178 NTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKIGWAY  257 (418)
T ss_dssp             ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCCEEEE
T ss_pred             CCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccccccc
Confidence            999999999988   667889999999999999999743221       0111 1234577889999776444  99999


Q ss_pred             EecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-------HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEE
Q 040741          270 MRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-------KKEMDYDHKRITALHDRLLNGIKEKLDGVVV  342 (457)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  342 (457)
                      +.++.++.+.......      .. ..+.+...++...+...       ++.+.+.+++++.+++.+.+.|++ + ++.+
T Consensus       258 ~~~~~i~~~~~~~~~~------~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~  328 (418)
T d2r5ea1         258 GPEALLKNLQMVHQNC------VY-TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKRDYMASFLAE-V-GMNP  328 (418)
T ss_dssp             SCHHHHHHHHHHHTTT------TC-SCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHH-T-TCEE
T ss_pred             ccchhhhhhhhccccc------cc-ccccchhhhccccccccccccccchhhHHHHHHHHHHhhhhHHhhHhh-c-CCcc
Confidence            9887665554333211      11 23333333332233221       123567788888999999999999 4 7776


Q ss_pred             eCCCCCcccceEEEEEcc-------------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          343 NGSMERRYIGNLNLSFAY-------------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      ..+. .  +.++.+.+..             .+...+...|   .||.+.+|..|....-            ...+.++|
T Consensus       329 ~~P~-g--g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~~~------------~~~g~~~i  393 (418)
T d2r5ea1         329 TVPQ-G--GYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPN------------KHLGEDFV  393 (418)
T ss_dssp             EECS-B--SSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHHHSEECBCGGGGSCGGG------------HHHHTTEE
T ss_pred             cCCC-c--eeEEEEEcccccccccchhcccccCHHHHHHHHHHHCCEEEeCchhhCCCCC------------ccCCCCEE
Confidence            5532 2  3333444432             1234555554   4999999987643100            01124799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~  430 (457)
                      ||++..  ++|++++++++|++.+
T Consensus       394 Ris~~~--~~e~l~~a~~rl~~~l  415 (418)
T d2r5ea1         394 RYCFFK--KDENLQKAAEILRKWK  415 (418)
T ss_dssp             EEECCS--CHHHHHHHHHHHHHHH
T ss_pred             EEEecC--CHHHHHHHHHHHHHHH
Confidence            999964  7899999999998865

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.9e-25  Score=218.14  Aligned_cols=331  Identities=15%  Similarity=0.079  Sum_probs=232.9

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--CC-cEEEeCChHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGAS--PK-EIIFTSGATES  130 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~~-~i~~t~g~T~a  130 (457)
                      .+.|.|..+.+. ++|+.+.+++.+.+.... +++    .  ..+..+..+.+.+.+.+..|.+  ++ ++++|+|++++
T Consensus        26 ~~~i~l~~G~Pd~~~p~~i~~a~~~~~~~~~~~Y~----~--~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~a   99 (382)
T d1u08a_          26 HQAINLSQGFPDFDGPRYLQERLAHHVAQGANQYA----P--MTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEA   99 (382)
T ss_dssp             TTCEECCCSSCSSCCCHHHHHHHHHHHHTTCCSCC----C--TTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHH
T ss_pred             CCCEEccCCCCCCCCCHHHHHHHHHHHhcCCCCCC----C--CcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHH
Confidence            456777776665 567888999998876421 111    1  1111233344444444455653  44 59999999999


Q ss_pred             HHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEecccccc
Q 040741          131 NNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEI  209 (457)
Q Consensus       131 ~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~  209 (457)
                      +.++++++.    ++|+.|++..+.|+.+.......   |..+..++.+ .++.+|+++++++++++++++++++++||+
T Consensus       100 l~~~~~~l~----~~gd~vl~~~p~y~~~~~~~~~~---g~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~l~~P~NPt  172 (382)
T d1u08a_         100 LYAAITALV----RNGDEVICFDPSYDSYAPAIALS---GGIVKRMALQPPHFRVDWQEFAALLSERTRLVILNTPHNPS  172 (382)
T ss_dssp             HHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECCTTTCCCCHHHHHHHCCTTEEEEEEESSCTTT
T ss_pred             HHHHHhhcc----cccceEEEecccccchhhhhhhc---cccceecccccccccCCHHHHhhhhccCccEEEECCCCccc
Confidence            999999999    89999999999999998877666   8888888776 445789999999999999999999999999


Q ss_pred             ccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----ccCCC----CcccEEEeccccccCCCC--ceEEEEecCCCc
Q 040741          210 GVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VDVEK----WNVSLMSLSGHKIYGPKG--VGALYMRRRPRI  276 (457)
Q Consensus       210 G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~~~~----~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~  276 (457)
                      |.+++   +++|.++|+++++.++.|+.+......    .....    .+.-+++.|++|.++.+|  +||+++.++.+.
T Consensus       173 G~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~~~  252 (382)
T d1u08a_         173 ATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISA  252 (382)
T ss_dssp             CCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHHHH
T ss_pred             ccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchhHH
Confidence            99998   566778899999999999998643221    11100    123488999999766444  999999876655


Q ss_pred             cccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEE
Q 040741          277 RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNL  356 (457)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~  356 (457)
                      ++......       .....+.....++..+++...+.+...+++++++++.+.+.+..  .++.+..+. .  +.++.+
T Consensus       253 ~~~~~~~~-------~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~~p~-g--g~~~~~  320 (382)
T d1u08a_         253 EIRKVHQY-------LTFSVNTPAQLALADMLRAEPEHYLALPDFYRQKRDILVNALNE--SRLEILPCE-G--TYFLLV  320 (382)
T ss_dssp             HHHHHHHH-------HTSSCCHHHHHHHHHHHHHCTHHHHTHHHHHHHHHHHHHHHTTS--SSCEECCCC-B--SSEEEE
T ss_pred             HHHhhhcc-------cccccccccccccccccccchHHHHHHHHHHHhhhhhhhhhhcc--CCcEEecCC-c--eEEEEE
Confidence            54433321       11245555555555666544445778888889999999888876  677776532 2  334455


Q ss_pred             EEcc---ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          357 SFAY---VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       357 ~~~~---~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .++.   .++.++...|   .||.+.+|..|..              + ...++++||++..  ++|++++++++|++
T Consensus       321 ~~~~~~~~d~~e~~~~ll~e~gV~v~PG~~F~~--------------~-~~~~~~~Ris~~~--~~e~l~~al~RL~~  381 (382)
T d1u08a_         321 DYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCA--------------D-PFPHKLIRLCFAK--KESTLLAAAERLRQ  381 (382)
T ss_dssp             ECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCS--------------S-CCCSCEEEEECCS--CHHHHHHHHHHHTT
T ss_pred             ecCCCCCCCHHHHHHHHHHHCCEEEEcchhhCC--------------C-CCCCCEEEEEEeC--CHHHHHHHHHHHhC
Confidence            5553   4556666655   5999999986643              1 2234799999964  68888888887764

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.94  E-value=1.5e-25  Score=217.06  Aligned_cols=344  Identities=11%  Similarity=0.010  Sum_probs=229.2

Q ss_pred             cEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHH
Q 040741           58 PLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNV  133 (457)
Q Consensus        58 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~  133 (457)
                      .+|...+|+..+|++|+++|.+.+.++.+.+.+   ..|+ +..+.+.++++++.++++++++++ .++|++|++++++.
T Consensus         3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHR-s~~~~~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~   81 (360)
T d1w23a_           3 QVFNFNAGPSALPKPALERAQKELLNFNDTQMSVMELSHR-SQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQFT   81 (360)
T ss_dssp             CCEECCSSSCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTT-SHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHH
T ss_pred             ceeEeCCCCcCCCHHHHHHHHHHHHhhcccCccccccCcC-CHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHH
Confidence            578788899999999999999987654332211   1243 456678999999999999999766 48888888877776


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQ  213 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~  213 (457)
                      +......   .+++.+++....+ ........++..+..++..........++++++......+    +.+..|.+|...
T Consensus        82 ~~~~~~~---~~~~~v~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~tg~~~  153 (360)
T d1w23a_          82 MLPMNLL---TKGTIGNYVLTGS-WSEKALKEAKLLGETHIAASTKANSYQSIPDFSEFQLNEN----DAYLHITSNNTI  153 (360)
T ss_dssp             HHHHHHC---CTTCEEEEEECSH-HHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGCCCCTT----EEEEEEESEETT
T ss_pred             HHHhhhc---ccCcccceeeccc-hhhhhHHHHHHhhhcceeeccccccccchhhhhhcccccc----cceeEecCCccc
Confidence            6665553   6677776655433 3334445556667777776655444445555555444333    445566799999


Q ss_pred             ChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCCCCceEEEEecCCCccccccccCCcc----cc
Q 040741          214 PMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQ----ER  289 (457)
Q Consensus       214 ~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~----~~  289 (457)
                      |+++|.++|+++|+++++|+++++|..+++++++++|+++++.+|+++| |.|+++.++...++..+....+..    ..
T Consensus       154 ~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1w23a_         154 YGTQYQNFPEINHAPLIADMSSDILSRPLKVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKS  232 (360)
T ss_dssp             TTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHT
T ss_pred             cceeeeeccccceeeEEeeccccccccccccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhh
Confidence            9999999999999999999999999999999999888888887775544 356666665443333222211111    11


Q ss_pred             ccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHH
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESL  366 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  366 (457)
                      .....++......+...++....+.  .....++.+.....................+++.+.+..+.|.++. ....++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~~~~~~  312 (360)
T d1w23a_         233 DSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEELNQQF  312 (360)
T ss_dssp             TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHHHHHHH
T ss_pred             hhhcccccceeeechhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCccHHHH
Confidence            1223355555555554444444432  3444444444555555444441233444455556666777777653 344566


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ...+  +||.+..|..|.                     +.+|+++..++|.|||+++++.|+++.+.
T Consensus       313 ~~~l~~~GI~~~~G~~~~---------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~~  359 (360)
T d1w23a_         313 LAKAKEQGFVGLNGHRSV---------------------GGCRASIYNAVPIDACIALRELMIQFKEN  359 (360)
T ss_dssp             HHHHHHTTEESCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCeeeeCCCcc---------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence            6666  799988886543                     35999998888999999999999988763

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.94  E-value=3.4e-25  Score=219.87  Aligned_cols=343  Identities=15%  Similarity=0.155  Sum_probs=226.7

Q ss_pred             cCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCCC---ccchhhhHHHHHHHHHHHHHHHh----C----CCCCcEE
Q 040741           54 IAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSR---THLFGWESEVAVETARSQIADLI----G----ASPKEII  122 (457)
Q Consensus        54 ~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~la~~~----g----~~~~~i~  122 (457)
                      +-.+.|.|..+.+..+.+.+.+.+.+............   .+...|.......++|+.+|+++    |    +++++|+
T Consensus        34 np~G~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe~I~  113 (431)
T d1m7ya_          34 NTNGIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLV  113 (431)
T ss_dssp             CTTSBEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEE
T ss_pred             CCCcEEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcceEE
Confidence            34567889888888776666666554221100000000   00001111122445666666654    3    5678999


Q ss_pred             EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC--CCCCCHHHHHHhcC------
Q 040741          123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA--DGIVNLDELRAAIR------  194 (457)
Q Consensus       123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~--~~~~d~~~le~~i~------  194 (457)
                      +|+|+|+++.+++.+++    ++||.|+++.+.|+.+...+...  .|++++.++.+.  +..+|++.++++++      
T Consensus       114 it~G~~~al~~~~~~l~----~pGd~Vlv~~P~y~~~~~~~~~~--~g~~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~  187 (431)
T d1m7ya_         114 LTAGATSANETFIFCLA----DPGEAVLIPTPYYPGFDRDLKWR--TGVEIVPIHCTSSNGFQITETALEEAYQEAEKRN  187 (431)
T ss_dssp             EEEHHHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHTTTT--TCCEEEEEECCGGGTSCCCHHHHHHHHHHHHHTT
T ss_pred             ECCCHHHHHHHHHHHhc----CCCCEEEEeCCCchhHHHHHHHh--cCceeccccccchhcccccHHHhhhhhhhhhhcc
Confidence            99999999999999998    89999999999999888766532  388999998873  34688988887774      


Q ss_pred             CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----cc-------------CCCCcccEEEe
Q 040741          195 PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----VD-------------VEKWNVSLMSL  254 (457)
Q Consensus       195 ~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~~-------------~~~~~~Di~~~  254 (457)
                      .+++++++++++||||.+.+   +++|.++|+++|+++|+|++|+.....    .+             ....+.-+++.
T Consensus       188 ~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~  267 (431)
T d1m7ya_         188 LRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVY  267 (431)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEE
T ss_pred             CcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccccCceEEEEe
Confidence            36789999999999999988   778899999999999999999742210    00             00112347888


Q ss_pred             ccccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHH
Q 040741          255 SGHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC---EIAKKEMDYDHKRITALHDRL  329 (457)
Q Consensus       255 s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al---~~~~~~~~~~~~~~~~~~~~l  329 (457)
                      |++|.+|.+|  +|+++.+++.+........        .....+.....++.+.+   ....+.+.+.+++++++++.+
T Consensus       268 s~SK~~~~~G~RiG~~~~~~~~i~~~~~~~~--------~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l  339 (431)
T d1m7ya_         268 SLSKDLGLPGFRVGAIYSNDDMVVAAATKMS--------SFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKL  339 (431)
T ss_dssp             ESSSSSCCGGGCEEEEEESCHHHHHHHHHHG--------GGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccCCCCccceeccchhhhHHHHHHHh--------ccccccccccchhhhhhccchhhhhhhhhhhhhhhhhhhhh
Confidence            9999887554  8999987754433222111        11122223322222222   223345777888888899999


Q ss_pred             HHHHhhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          330 LNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      .+.|++  +++.+..+..   +.++.+.++..       +..++...|   .||.+.+|..|...               
T Consensus       340 ~~~L~~--~gi~~~~p~g---g~f~w~~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~F~~~---------------  399 (431)
T d1m7ya_         340 VSGLQK--SGISCLNGNA---GLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCT---------------  399 (431)
T ss_dssp             HHHHHT--TTCEECCCCS---SSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCS---------------
T ss_pred             hhhhhc--CCcEEecCCc---eeEEEEECccccccCcccCHHHHHHHHHHHCCEEEEeccccCCC---------------
Confidence            999988  6888875422   33444555421       122444444   59999999876431               


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        ..+++||+++. .++++++.++++|++++++.
T Consensus       400 --~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~~~  430 (431)
T d1m7ya_         400 --EPGWFRVCFAN-LPERTLDLAMQRLKAFVGEY  430 (431)
T ss_dssp             --STTEEEEECSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred             --CCCEEEEEeCc-CCHHHHHHHHHHHHHHHHHh
Confidence              12799999864 45789999999999998864

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.94  E-value=2.9e-25  Score=220.10  Aligned_cols=343  Identities=13%  Similarity=0.114  Sum_probs=224.3

Q ss_pred             ccCCCcEEecCCCCCCCCHHHHHHHHHHHhhccCCCCC--CccchhhhHHHHHHHHHHHHHHHh----C----CCCCcEE
Q 040741           53 RIAGRPLYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS--RTHLFGWESEVAVETARSQIADLI----G----ASPKEII  122 (457)
Q Consensus        53 ~~~~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~la~~~----g----~~~~~i~  122 (457)
                      .+..+.|.|+.+.+..+.+.+.+.+.+...........  ..+...|.......++|+.+|+++    |    .++++++
T Consensus        33 ~np~G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e~Iv  112 (428)
T d1iaya_          33 KNPNGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVV  112 (428)
T ss_dssp             SSTTSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCE
T ss_pred             CCCCceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChhhEE
Confidence            34466789988877777776666665532111000000  000001111123456677776664    2    4678999


Q ss_pred             EeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhc------C
Q 040741          123 FTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAI------R  194 (457)
Q Consensus       123 ~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i------~  194 (457)
                      +|+|+++++.+++.+++    ++||.|+++.+.|+.+...+..  ..|++++.++.+  .++.+|+++++.++      .
T Consensus       113 it~G~~~al~~~~~~l~----~~Gd~Vlv~~P~y~~~~~~~~~--~~g~~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~  186 (428)
T d1iaya_         113 MAGGATGANETIIFCLA----DPGDAFLVPSPYYPAFNRDLRW--RTGVQLIPIHCESSNNFKITSKAVKEAYENAQKSN  186 (428)
T ss_dssp             EEEHHHHHHHHHHHHHC----CTTCEEEEESSCCTTHHHHTTT--TTCCEEEEECCCTTTTTCCCHHHHHHHHHHHHHTT
T ss_pred             EcCCHHHHHHHHHHHhC----CCCCEEEEccCCchHHHHHHHH--hcCCeEEEeecccccccccccccccchhhhhhccC
Confidence            99999999999999998    8999999999999998876542  248999999887  34578888876543      4


Q ss_pred             CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc----c-----------cCCCCcccEEEecc
Q 040741          195 PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP----V-----------DVEKWNVSLMSLSG  256 (457)
Q Consensus       195 ~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~----~-----------~~~~~~~Di~~~s~  256 (457)
                      ++++++++++++||||.+.+   +++|+++|++||++||+|++|+.....    .           .....+..+++.|+
T Consensus       187 ~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~  266 (428)
T d1iaya_         187 IKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSL  266 (428)
T ss_dssp             CCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEES
T ss_pred             CCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhccccccceEEEEecC
Confidence            67889999999999999988   678999999999999999999742211    0           01112334788899


Q ss_pred             ccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHH
Q 040741          257 HKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC---EIAKKEMDYDHKRITALHDRLLN  331 (457)
Q Consensus       257 ~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al---~~~~~~~~~~~~~~~~~~~~l~~  331 (457)
                      +|.|+.+|  +|+++..++.+.+.......        .+..+.+...++.+.+   ....+.+++..++++++++.+.+
T Consensus       267 SK~~~~~GlRiG~~~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~  338 (428)
T d1iaya_         267 SKDMGLPGFRVGIIYSFNDDVVNCARKMSS--------FGLVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTN  338 (428)
T ss_dssp             TTTSSCGGGCEEEEEESCHHHHHHHHHHHT--------TSCCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccCCCcccccccccccchhhhhhhhhc--------ccccccccccchhhhhhhhccccccccccccccchhHHHHHH
Confidence            99776554  89999865433222211111        1123333333332222   22333467777788888999999


Q ss_pred             HHhhcCCCeEEeCCCCCcccceEEEEEccc-------cchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccC
Q 040741          332 GIKEKLDGVVVNGSMERRYIGNLNLSFAYV-------EGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDM  401 (457)
Q Consensus       332 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~  401 (457)
                      .|+.  +|+.+..+. .  +.++.+.++..       +..++...|   .||.+.+|..|..                 .
T Consensus       339 ~L~~--~gi~~~~p~-g--g~f~w~~l~~~~~~~~~~~~~~l~~~Ll~~~gV~v~PG~~F~~-----------------~  396 (428)
T d1iaya_         339 GLEV--VGIKCLKNN-A--GLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFEC-----------------Q  396 (428)
T ss_dssp             HHHH--TTCCBCCCS-S--SSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTC-----------------S
T ss_pred             HHHh--CCCEEecCC-c--ceEEEEECccccccCCCCCHHHHHHHHHHhCCEEEEcchhcCC-----------------C
Confidence            9987  677765432 2  33444555421       122344444   5999999986643                 1


Q ss_pred             CCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          402 AHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       402 ~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ..+++||+++. .++++++.++++|++++..
T Consensus       397 ~~g~~Ris~a~-~~~~~l~~al~Rl~~~l~~  426 (428)
T d1iaya_         397 EPGWFRVCFAN-MDDGTVDIALARIRRFVGV  426 (428)
T ss_dssp             SSSEEEEECSS-SCHHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEEeCC-CCHHHHHHHHHHHHHHHhh
Confidence            23899999864 4577899999999998864

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=2.9e-25  Score=214.60  Aligned_cols=344  Identities=12%  Similarity=-0.011  Sum_probs=239.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCC---CccchhhhHHHHHHHHHHHHHHHhCCCCC-cEEEeCChHHHHHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHS---RTHLFGWESEVAVETARSQIADLIGASPK-EIIFTSGATESNNVS  134 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~t~g~T~a~~~a  134 (457)
                      +|--++|+..+|++|+++|.+.+.+....+.+   -.| .+..+.+.++++++.|++++|++.+ .++|++|++++++.+
T Consensus         2 ~~nF~pGP~~~p~~Vl~a~~~~~~~~~~~~~~~~~~sH-Rs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a   80 (360)
T d1bjna_           2 IFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSH-RGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAA   80 (360)
T ss_dssp             CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCT-TSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred             eEEeCCCCcCCCHHHHHHHHHHHhhhcccCccccccCc-CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhh
Confidence            46667788899999999999998765433222   122 2566778999999999999999654 589998888776666


Q ss_pred             HHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          135 IKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       135 l~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      ......   .+++.+++....+ .........+..|..++....+.++..+.+++++.+..+++++++.+.+|.||...+
T Consensus        81 ~~~~~~---~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~t~~~~~  156 (360)
T d1bjna_          81 VPLNIL---GDKTTADYVDAGY-WAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIA  156 (360)
T ss_dssp             HHHHHC---TTCCEEEEEESSH-HHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCCCCSSCSCEEECSEETTTTEE
T ss_pred             hhhccc---ccccccceecccc-hhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhccCCceeEEEecccccccCcc
Confidence            654442   6667776654333 333344555666777777776666667788888888999999999999999999998


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcc----cc
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQ----ER  289 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~----~~  289 (457)
                      ++++.  ++.+++++++|++++++..+++..  ++|++++|++| .++|+|.++++.+++..+........+..    ..
T Consensus       157 ~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~--~~dv~~~ss~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (360)
T d1bjna_         157 IDETP--DFGADVVVAADFSSTILSRPIDVS--RYGVIYAGAQKNIGPAGLTIVIVREDLLGKANIACPSILDYSILNDN  232 (360)
T ss_dssp             CCCCC--CCCTTCCEEEECTTTTTSSCCCGG--GCSEEEEETTTTTSSTTCEEEEEEGGGCSCCCTTSCGGGCHHHHHHT
T ss_pred             cccee--cccccceeeeeeeccccceeeeec--cceeEEEEcccccccCCCceeEeeehhhhhccccCCcchhhHHHHhh
Confidence            87764  567799999999999998887765  57899999999 45566777777776654443322221111    11


Q ss_pred             ccccCCCChhHHHHHHHHH-HHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc-ccchHH
Q 040741          290 GIRSGTLPTPLIVGFGSAC-EIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY-VEGESL  366 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al-~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  366 (457)
                      .....+.+......+..+. ..... ......++..+.+..+.+.+.. .........+..+.+.++.|.++. .....+
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~rs~~v~~f~~~~~~~~~~~  311 (360)
T d1bjna_         233 GSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELLYGVIDN-SDFYRNDVAKRNRSRMNVPFQLADSALDKLF  311 (360)
T ss_dssp             TTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH-CSSEECCBCGGGBCSSEEEEEESSGGGHHHH
T ss_pred             hhhccccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhc-cccccccCCcccccceEEEEEcCCcccHHHH
Confidence            1122233444333333333 32222 3566667777777777777777 555555555666667777788853 455666


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ...+  +||.+..|..|.                     +.+|+++..++|.|||++++++|++..++.
T Consensus       312 ~~~l~~~Gi~~~~G~~~~---------------------g~~Ris~~~~~t~edV~~li~~l~e~~~~~  359 (360)
T d1bjna_         312 LEESFAAGLHALKGHRVV---------------------GGMRASIYNAMPLEGVKALTDFMVEFERRH  359 (360)
T ss_dssp             HHHHHHTTEECCBCCTTT---------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEeecCCCcc---------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHHc
Confidence            6666  799887774321                     359999999999999999999999987653

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=3.9e-25  Score=215.47  Aligned_cols=334  Identities=17%  Similarity=0.146  Sum_probs=227.4

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++.++++.+.+.+.+       ...|    +.+.++|+.+++++|.+  .+++++|||.|+.+++.++..   ++||
T Consensus         9 ~~~~~~~~~~~~~~~~~~-------~~~G----~~v~~~E~~la~~~g~~--~ai~~~sgt~Al~~al~al~~---~~gd   72 (376)
T d1mdoa_           9 AMGAEELAAVKTVLDSGW-------ITTG----PKNQELEAAFCRLTGNQ--YAVAVSSATAGMHIALMALGI---GEGD   72 (376)
T ss_dssp             CCCHHHHHHHHHHHHHTC-------CSSS----HHHHHHHHHHHHHHCCS--EEEEESCHHHHHHHHHHHTTC---CTTC
T ss_pred             CCCHHHHHHHHHHHhcCC-------CcCC----HHHHHHHHHHHHHHCcC--eEEEeCCHHHHHHHHHHHhCC---CCCC
Confidence            467788899999887531       1112    57889999999999985  499999999999999999843   8999


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCC-CCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGA-DGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFK  226 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~-~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~  226 (457)
                      +||++..+|.+...++..+   |+++++++++. ++.+|+++|+++|+++|++|+++|.   .|...|+++|.++|+++|
T Consensus        73 eVi~~~~~~~~~~~ai~~~---g~~pv~~d~~~~~~~~d~~~l~~~i~~~tkaIi~~h~---~G~~~~~~~i~~i~~~~~  146 (376)
T d1mdoa_          73 EVITPSMTWVSTLNMIVLL---GANPVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHY---AGAPADLDAIYALGERYG  146 (376)
T ss_dssp             EEEEESSSCHHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHHHT
T ss_pred             EEEEecccccccccchhcc---ccceeeecccccccCCCHHHHHHhcCCCCeEEEEeCC---CCCccchhHHHHHHHhcC
Confidence            9999999999999998877   99999999985 5789999999999999999988765   799999999999999999


Q ss_pred             CcEEEehhhhcCCCccc--CCCCcccEEEeccccccCCCCceEEEEecCCC-ccccccccCCccccc-------------
Q 040741          227 IPFHTDAAQALGKIPVD--VEKWNVSLMSLSGHKIYGPKGVGALYMRRRPR-IRVEPLINGGGQERG-------------  290 (457)
Q Consensus       227 v~li~D~a~~~g~~~~~--~~~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~-~~~~~~~~~~~~~~~-------------  290 (457)
                      +++|+|+||++|+..-+  ....+..+++++.+|.++..+.|+++.+++.. ++++.....+.....             
T Consensus       147 i~vIeD~a~a~g~~~~~~~~g~~g~~~~Sf~~~K~l~~g~GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  226 (376)
T d1mdoa_         147 IPVIEDAAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQSGGRAPQAE  226 (376)
T ss_dssp             CCBCEECTTCTTCEETTEETTSSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC-----------CCE
T ss_pred             ceEEeccchhccCeeCCeecccccCccccCCCcCCCCCCCCCEEEEechhHHHHHHhhcccCCccccccccccccccccc
Confidence            99999999999976432  33345556667778965544458888777533 233322221110000             


Q ss_pred             -cccC-CCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCccc--ceEEEEEc----cc
Q 040741          291 -IRSG-TLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYI--GNLNLSFA----YV  361 (457)
Q Consensus       291 -~~~~-t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~  361 (457)
                       ...+ ......+   .+|+... ...+++..++.+++++++.+.|.+ ++...+.........  ......+.    ..
T Consensus       227 ~~~~g~n~~~~~~---~Aai~~~qL~~~~~~~~~r~~~~~~~~~~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (376)
T d1mdoa_         227 VLAPGYKYNLPDL---NAAIALAQLQKLDALNARRAAIAAQYHQAMAD-LPFQPLSLPSWEHIHAWHLFIIRVDEARCGI  302 (376)
T ss_dssp             ESSCCCBCCCCHH---HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHT-SSCEECCCCSSCEECCCSCEEEECCHHHHSS
T ss_pred             chhcccccccchh---hhhhhhhhhhhhhHHHHHHhhhhhhhhhhccc-ccccccccccccccccccccccccccccchh
Confidence             0001 0011111   1222222 234678888899999999999998 777665543322111  11112221    12


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCC-----CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGV-----DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~-----~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +.+++...|  +||.++...  .+....|.+. ..+..     .+....+.|.+.+....|.+|++++++.|++++
T Consensus       303 ~Rd~l~~~L~~~gI~~~~~y--~~~~~~~~~~-~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         303 TRDALMASLKTKGIGTGLHF--RAAHTQKYYR-ERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             CHHHHHHHHHHTTBCCBCCC--CCGGGSHHHH-HHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCCCCeeeEC--cchhcCHHHH-hhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            234677777  577665432  2222222211 11111     112345789999999999999999999999875

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.93  E-value=2.6e-25  Score=218.92  Aligned_cols=338  Identities=12%  Similarity=0.123  Sum_probs=220.7

Q ss_pred             CCcEEecCCCCC--CCC-HHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----C--CCCCcEEEeCC
Q 040741           56 GRPLYLDMQATT--PVD-PRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----G--ASPKEIIFTSG  126 (457)
Q Consensus        56 ~~~i~l~~~~~~--~~~-~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g--~~~~~i~~t~g  126 (457)
                      .+.|.|..+-+.  .+| +.+.+++.+.+....      ....+|.......++|+.+++++    |  ++++++++|+|
T Consensus        29 ~~~i~l~~G~P~~~~~P~~~~~~~~~~~~~~~~------~~~~~Y~~~~G~~~lR~aia~~l~~~~g~~~~~~~I~it~G  102 (403)
T d1wsta1          29 SDVISLAGGLPAPETFPVETIKKIAVEVLEEHA------DKALQYGTTKGFTPLRLALARWMEKRYDIPMSKVEIMTVAG  102 (403)
T ss_dssp             SSCEECCCCCCCGGGSCHHHHHHHHHHHHHHSH------HHHHSCCCSSCCHHHHHHHHHHHHHHHCCCCTTCEEEEESS
T ss_pred             CCcEECCCCCCCccccCHHHHHHHHHHHHHhCc------ccccCCCCCcCCHHHHHHHHHHHHHHhCCCCChHHeeeccc
Confidence            345666554443  233 455556666554321      00111111123445566666654    4  56889999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHH-------HHHHhcCCCceE
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLD-------ELRAAIRPDTGL  199 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~-------~le~~i~~~t~l  199 (457)
                      +++++.+++.++.    ++|+.|++..+.|+.+...+..+   |.+++.++.+.++. +..       ..+...+..+.+
T Consensus       103 ~~~al~~~~~~l~----~~gd~v~~~~P~y~~~~~~~~~~---g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  174 (403)
T d1wsta1         103 SQQALDLIGRVFL----NPGDPIVVEAPTYLAAIQAFKYY---DPEFISIPLDDKGM-RVDLLEEKLEELRKQGKRVKIV  174 (403)
T ss_dssp             HHHHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---CCEEEEEEEETTEE-CHHHHHHHHHHHHHTTCCCCEE
T ss_pred             chHHHHHHHHHHh----hcCCccccCCCcchhhhHHHhhc---cccceeEeecccCC-ccccccccchhhhhcccccccc
Confidence            9999999999998    89999999999999998887666   99999988774431 121       222233456678


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcC---CC---cc-cCCCCcccEEEeccccccCC-CCceEE
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALG---KI---PV-DVEKWNVSLMSLSGHKIYGP-KGVGAL  268 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g---~~---~~-~~~~~~~Di~~~s~~K~~g~-~G~G~l  268 (457)
                      +++++++||||.+.+   +++|+++|++||++||+|++|..-   ..   ++ .....+..+++.|++|.+++ ..+|++
T Consensus       175 ~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~  254 (403)
T d1wsta1         175 YTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWV  254 (403)
T ss_dssp             EECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEE
T ss_pred             ccccccCCCCCccCCHHHHHHHHHHHHhcCceeccccchhheecCCCCCCcccccCCCCcEEEEccccceecCccccccc
Confidence            889999999999988   567888999999999999999632   11   11 12234567889999997663 249999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHH--HHHHhhHHHHHHHHHHHHHHHHHHhhcC-CCeEEeCC
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE--IAKKEMDYDHKRITALHDRLLNGIKEKL-DGVVVNGS  345 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~--~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~  345 (457)
                      +++++.+..+......       .....+.....+....+.  .....+.+..+.+...++.+.+.|.+.+ .++.+..+
T Consensus       255 i~~~~~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p  327 (403)
T d1wsta1         255 AAHPHLIRKMEIAKQS-------IDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP  327 (403)
T ss_dssp             EECHHHHHHHHHHHHH-------HHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC
T ss_pred             ccchHHHHHHHHHHhh-------hccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC
Confidence            9987665544332211       112333333333322222  2233467788888888888888887733 34555443


Q ss_pred             CCCcccceEEEEEcc-ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHH
Q 040741          346 MERRYIGNLNLSFAY-VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRA  422 (457)
Q Consensus       346 ~~~~~~~~~~~~~~~-~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~  422 (457)
                       ..  +.++.+.++. .+...+...+  +||.+.+|..|...               ....+++||+++. .++++++++
T Consensus       328 -~g--g~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~---------------~~~~~~iRi~~~~-~~~~~l~~a  388 (403)
T d1wsta1         328 -EG--GMFVRVTLPEGIDTKLMMERAVAKGVAYVPGEAFFVH---------------RDKKNTMRLNFTY-VPEETIREG  388 (403)
T ss_dssp             -SB--SSEEEEECCTTCCTTTTHHHHHHTTEECEEGGGGSTT---------------CCCCSEEEEECSS-SCHHHHHHH
T ss_pred             -Cc--eeEEEEECCCCCCHHHHHHHHHHCCEEEEechhhcCC---------------CCCCCEEEEEecC-CCHHHHHHH
Confidence             22  3445555553 3455555555  79999999866532               1234899999975 468999999


Q ss_pred             HHHHHHHHHHH
Q 040741          423 IELTVKQVEKL  433 (457)
Q Consensus       423 ~~~l~~~~~~~  433 (457)
                      +++|++++++.
T Consensus       389 l~rl~~~l~~~  399 (403)
T d1wsta1         389 VRRLAETIKEE  399 (403)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.4e-26  Score=227.43  Aligned_cols=319  Identities=15%  Similarity=0.099  Sum_probs=209.4

Q ss_pred             HHHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC-
Q 040741          101 VAVETARSQIADLIGASP-KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV-  178 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~-  178 (457)
                      ....++.+++++++|.+. ...++++|||++..++..........++++||++...|+++..++..+   |++++.++. 
T Consensus        94 ~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~---g~~~~~v~~~  170 (445)
T d3bc8a1          94 KITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTA---GFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHT---TCEEEEECCE
T ss_pred             HHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHc---CCeeEEEEee
Confidence            345567788999999865 458899998876555444333333366789999999999999999888   998888754 


Q ss_pred             --CCCCCCCHHHHHHhcC----CCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcc------cCCC
Q 040741          179 --GADGIVNLDELRAAIR----PDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV------DVEK  246 (457)
Q Consensus       179 --~~~~~~d~~~le~~i~----~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~------~~~~  246 (457)
                        +.++.+|+++|+++|.    +++.+|+++++++++|.+.|+++|+++|++||+++|+|+|++.+....      +...
T Consensus       171 ~~~~~~~id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~  250 (445)
T d3bc8a1         171 LEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARV  250 (445)
T ss_dssp             EETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHHH
T ss_pred             ccCcccccCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhhhhhccccchhccCc
Confidence              4668899999999885    368899999999999999999999999999999999999998765321      1222


Q ss_pred             CcccEEEecccc-ccCCCCceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHH-HHHhhHHHHHHHH
Q 040741          247 WNVSLMSLSGHK-IYGPKGVGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI-AKKEMDYDHKRIT  323 (457)
Q Consensus       247 ~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~-~~~~~~~~~~~~~  323 (457)
                      .++|++++|+|| +++|.|.|+++.++... +++.....++         ....+ ...+..++.. ...++....+...
T Consensus       251 ~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~  320 (445)
T d3bc8a1         251 GRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGR---------ASASP-SLDVLITLLSLGCSGYRKLLKERK  320 (445)
T ss_dssp             SCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHHSCSC---------BCSHH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcceEEecCccccccCCCCceeeeCChHHHHHHHHHHhhc---------ccCcc-hHHHHHHHHHHhhhcchhhHHHHH
Confidence            258999999999 66788888888876422 2222222221         11112 2222223322 2345667777777


Q ss_pred             HHHHHHHHHHhhcCC---CeEEeCCCCCcccceEEEEEcc------ccchHHHhcccCeEecccCccCCCCCCh--hHHH
Q 040741          324 ALHDRLLNGIKEKLD---GVVVNGSMERRYIGNLNLSFAY------VEGESLLMGLKEVAVSSGSACTSASLEP--SYVL  392 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~i~~~~g~~~~~~~~~~--~~~l  392 (457)
                      ++.+++.+.|.+ +.   +..+...+..  .....+.+..      .+...+...|....+.....|.+....+  .+.+
T Consensus       321 ~~~~~~~~~L~~-l~~~~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~~  397 (445)
T d3bc8a1         321 EMFVYLSTQLKK-LAEAHNERLLQTPHN--PISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTF  397 (445)
T ss_dssp             HHHHHHHHHHHH-HHHHTTCCBCCCTTC--SSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEEE
T ss_pred             HHHHHHHHHHHH-HHhhcCceeecCCCC--CcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhhh
Confidence            777777777765 22   3344333332  2233334422      1223444444322222222222211111  1122


Q ss_pred             HHcCCC-ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          393 RALGVD-EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       393 ~~~g~~-~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                      ..+|.. +......||++++..+|+||||+++++|+++++++++
T Consensus       398 ~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk~~rk  441 (445)
T d3bc8a1         398 RGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLNIVRK  441 (445)
T ss_dssp             ETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            233332 2334578999999999999999999999999999875

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=6e-25  Score=217.42  Aligned_cols=346  Identities=12%  Similarity=0.108  Sum_probs=222.3

Q ss_pred             CCCcEEecCCCCCC--CC-HHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQATTP--VD-PRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG---ASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~~~--~~-~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~i~~t~g~T  128 (457)
                      ..+.|.|..+.+.+  +| +.+.+++.+.+++........+...|  ..+..+.+.+.+.+..|   +++++|++|+|++
T Consensus        37 ~~~~I~l~~G~Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G--~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~  114 (420)
T d1vp4a_          37 DKDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEG--DPVLKQQILKLLERMYGITGLDEDNLIFTVGSQ  114 (420)
T ss_dssp             STTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTC--CHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHH
T ss_pred             CCCcEecCCcCCCCccCCHHHHHHHHHHHHhhCCccccCCCCCcC--CHHHHHHHHHHHHHHhCCCCCCHHHeEeccchh
Confidence            45677787665542  34 44556665555432100000011111  12333334444444444   4678899999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC---------CCceE
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR---------PDTGL  199 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~---------~~t~l  199 (457)
                      +|+.+++.+++    ++||.|+++.+.|+.+...++..   |.+++.++.++.+ +|++.++..+.         ..+.+
T Consensus       115 ~al~~~~~~~~----~~Gd~Vlv~~P~y~~~~~~~~~~---g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~  186 (420)
T d1vp4a_         115 QALDLIGKLFL----DDESYCVLDDPAYLGAINAFRQY---LANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFI  186 (420)
T ss_dssp             HHHHHHHHHHC----CTTCEEEEEESCCHHHHHHHHTT---TCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             hhHHHHHHhhh----ccccccccccccccchhHHHHHH---hhhcccccccccc-cccchhhhhhhhhHHHhhcccccee
Confidence            99999999988    89999999999999888776655   9999999987554 67777655432         23567


Q ss_pred             EEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCc------c-cCCCCcccEEEeccccccCCC-CceEE
Q 040741          200 ISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIP------V-DVEKWNVSLMSLSGHKIYGPK-GVGAL  268 (457)
Q Consensus       200 i~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~------~-~~~~~~~Di~~~s~~K~~g~~-G~G~l  268 (457)
                      +++++++||||.+.+   +++|+++|++|++++++|+++..-...      . .....+.-+++.+++|++++. .+|++
T Consensus       187 ~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~  266 (420)
T d1vp4a_         187 YVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMV  266 (420)
T ss_dssp             EEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEE
T ss_pred             eEecCCCCccchhhhhhhhhhhhhhhhcccccccccchhhhccccCcccccccccccccceeEEeccccccccccccccc
Confidence            778999999999987   678999999999999999998732211      0 111223446677777865532 49999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHHHhhc---CCCeEEe
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEI--AKKEMDYDHKRITALHDRLLNGIKEK---LDGVVVN  343 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~--~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~  343 (457)
                      +++++.++++.......       ....+.....++...+..  ..+.+.+..+.+++..+.+.+.|.+.   .+++.+.
T Consensus       267 ~~~~~~i~~l~~~~~~~-------~~~~~~~~q~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~  339 (420)
T d1vp4a_         267 AGSKEFIRKIVQAKQSA-------DLCSPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWV  339 (420)
T ss_dssp             ECCHHHHHHHHHHHHHH-------HSSCCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEEC
T ss_pred             cccchhhhhhhhhhhhc-------cccCchhhhhhhhhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEe
Confidence            99887666554433211       112333333322222221  12235566666677666666666542   5678776


Q ss_pred             CCCCCcccceEEEEEc-cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          344 GSMERRYIGNLNLSFA-YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      .+..   +.++.+.++ +.+...+.+.+  +||.+.+|..|...               ....++|||+++. .+.|+++
T Consensus       340 ~p~g---g~f~~~~~~~~~d~~~~~~~l~~~gV~v~PG~~F~~~---------------~~~~~~iRls~~~-~~~e~l~  400 (420)
T d1vp4a_         340 KSEG---GLFIWLTLPEGFDTWEMFEYAKRKKVFYVPGRVFKVY---------------DEPSPSMRLSFCL-PPDEKIV  400 (420)
T ss_dssp             CCSB---SSEEEEECCTTCCTTTTHHHHHHHTEECEEGGGGCTT---------------CCCCSEEEEECSS-SCHHHHH
T ss_pred             cCCc---eEEEEEECCCCCCHHHHHHHHHHCCeEEEechhhCCC---------------CCCCCEEEEEeCc-CCHHHHH
Confidence            5422   344555664 34555666655  69999999876431               1234799999974 4689999


Q ss_pred             HHHHHHHHHHHHHHhc
Q 040741          421 RAIELTVKQVEKLREM  436 (457)
Q Consensus       421 ~~~~~l~~~~~~~~~~  436 (457)
                      +++++|+++++++++.
T Consensus       401 ~a~~rL~~~l~~~~~~  416 (420)
T d1vp4a_         401 EGIKRLREVVLEYGKE  416 (420)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHh
Confidence            9999999999988653

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=7e-24  Score=204.85  Aligned_cols=279  Identities=15%  Similarity=0.160  Sum_probs=200.8

Q ss_pred             HHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC-EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCC
Q 040741          104 ETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR-HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADG  182 (457)
Q Consensus       104 ~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~-~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~  182 (457)
                      .++++++|+++|+++++|++|+|+++++.++++++.    ++|| .|+++.+.|..+...++..   |.+++.++.++++
T Consensus        59 ~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~~----~pgd~~Vl~~~P~y~~~~~~~~~~---g~~v~~~~~~~~~  131 (354)
T d1fg7a_          59 KAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC----EPGKDAILYCPPTYGMYSVSAETI---GVECRTVPTLDNW  131 (354)
T ss_dssp             HHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC----CTTTCEEEECSSSCTHHHHHHHHH---TCEEEECCCCTTS
T ss_pred             HHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHhh----ccccccccccccccccchhhhhcc---Cceeecccccccc
Confidence            479999999999999999999999999999999998    8888 5888999999998888777   9999999988888


Q ss_pred             CCCHHHHHHhcCCCceEEEEeccccccccccChHH---HHHHHHhcCCcEEEehhhhcCC----CcccCCCCcccEEEec
Q 040741          183 IVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEE---IGQICKEFKIPFHTDAAQALGK----IPVDVEKWNVSLMSLS  255 (457)
Q Consensus       183 ~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~---i~~l~~~~~v~li~D~a~~~g~----~~~~~~~~~~Di~~~s  255 (457)
                      .+|++++++++. ++++|++++++||+|.+.+-++   +.+.++ ++.++++|+++.-..    .+.........+++.|
T Consensus       132 ~~d~~~l~~~~~-~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~-~~~~~iidd~~~~f~~~~~~~~~~~~~~~~iv~~S  209 (354)
T d1fg7a_         132 QLDLQGISDKLD-GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRT  209 (354)
T ss_dssp             CCCHHHHHTSCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGGGCSGGGTTTCTTEEEEEE
T ss_pred             ccchhhhhhccc-ccceeeccCCCccceeEeeeccccccccccc-ccccccccccchhhccccccchhhcccccceEEeC
Confidence            999999998875 7999999999999999988544   444443 567777777654211    1112223344577889


Q ss_pred             cccccCCCC--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHH
Q 040741          256 GHKIYGPKG--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       256 ~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~  332 (457)
                      ++|.||.+|  +|+++++++.+.++......         ...+.+....+..++... ........+++.+.++++.+.
T Consensus       210 ~SK~~~laGlRiGy~i~~~~~i~~l~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~  280 (354)
T d1fg7a_         210 LSKAFALAGLRCGFTLANEEVINLLMKVIAP---------YPLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAA  280 (354)
T ss_dssp             SSSTTCCGGGCCEEEEECHHHHHHHHHHSCS---------SCSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccCCCccccccccccchhhhhhhhhcCc---------cchhhHHHHHHHHHHhhhccccccccchhhhhHHHHHHHH
Confidence            999888655  99999988766665433321         133333333332232221 223456666778888889999


Q ss_pred             HhhcCCCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEec
Q 040741          333 IKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGI  410 (457)
Q Consensus       333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~  410 (457)
                      +.+ ++++....+..   .+++.+.++  ++.++...|  +||.++++....             |     ..+++||++
T Consensus       281 l~~-~~~~~~~~p~~---~~f~~~~~~--~~~~~~~~L~~~gIlvr~~~~~~-------------~-----~~~~lRisi  336 (354)
T d1fg7a_         281 LKE-IPCVEQVFDSE---TNYILARFK--ASSAVFKSLWDQGIILRDQNKQP-------------S-----LSGCLRITV  336 (354)
T ss_dssp             HHH-STTEEEECCCS---SSEEEEEET--THHHHHHHHHHTTEECEECTTST-------------T-----CTTEEEEEC
T ss_pred             HHh-CCCcceeCCCC---ceEEEEeCC--CHHHHHHHHHHCCcEEecCCCCC-------------C-----CCCEEEEEe
Confidence            998 88775443322   345555554  456666666  799988765321             1     127999998


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 040741          411 GRFTTEAEVDRAIELTV  427 (457)
Q Consensus       411 ~~~~t~edid~~~~~l~  427 (457)
                      +   ++||.++++++|+
T Consensus       337 g---t~ee~~~~l~aLk  350 (354)
T d1fg7a_         337 G---TREESQRVIDALR  350 (354)
T ss_dssp             C---CHHHHHHHHHHHH
T ss_pred             C---CHHHHHHHHHHHh
Confidence            7   5899998888876

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.8e-24  Score=213.69  Aligned_cols=338  Identities=14%  Similarity=0.108  Sum_probs=230.9

Q ss_pred             cCCCcEEecCCCCC-CCCHHHHHHHHHHHhhc---cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCC--C-CcEEEeCC
Q 040741           54 IAGRPLYLDMQATT-PVDPRVLDAMLPFYLSR---YGNPHSRTHLFGWESEVAVETARSQIADLIGAS--P-KEIIFTSG  126 (457)
Q Consensus        54 ~~~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~--~-~~i~~t~g  126 (457)
                      .+.+.|.|..+.+. ++|+.+.+++.+.+...   .+++.    .  .+..+..+.+.+.+.+.+|.+  + ++|++|+|
T Consensus        23 ~~~dvI~l~~G~p~~~~p~~v~~a~~~al~~~~~~~~Y~~----~--~G~~~LReaia~~~~~~~g~~~~~~~~I~it~G   96 (418)
T d1w7la_          23 SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDFMLNQYTK----T--FGYPPLTKILASFFGELLGQEIDPLRNVLVTVG   96 (418)
T ss_dssp             HTSCCEECCCCSCSSCCCHHHHHHHHHHTSSCGGGGSCCC----T--TCCHHHHHHHHHHHHHHHTCCCCHHHHEEEESH
T ss_pred             CCCCCEECCCCCCCCCCCHHHHHHHHHHHhCCCcccCCCC----C--cCCHHHHHHHHHHHHHHhCCCCCcccceeeccC
Confidence            35667888888776 67888999999887531   11111    1  111234444455555555765  2 47999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC------------CCCCCCHHHHHHhcC
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG------------ADGIVNLDELRAAIR  194 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~------------~~~~~d~~~le~~i~  194 (457)
                      +++|+.+++.++.    ++|+.|++..+.++.+...+...   |.+++.++..            .+..+|.++++....
T Consensus        97 ~~~al~~~~~~l~----~~g~~vlv~~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  169 (418)
T d1w7la_          97 GYGALFTAFQALV----DEGDEVIIIEPFFDCYEPMTMMA---GGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT  169 (418)
T ss_dssp             HHHHHHHHHHHHC----CTTCEEEEEESCCTTHHHHHHHT---TCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC
T ss_pred             cHHHHHHHHHhhc----cCCceeeccccccchhHHHHHHc---CCEeeccccccccccccccccccCcccchhhhhcccc
Confidence            9999999999999    89999999999999999887777   8888877653            223578888999999


Q ss_pred             CCceEEEEeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCC----Ccc---cCCCC-cccEEEeccccccCCC
Q 040741          195 PDTGLISVMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGK----IPV---DVEKW-NVSLMSLSGHKIYGPK  263 (457)
Q Consensus       195 ~~t~li~i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~----~~~---~~~~~-~~Di~~~s~~K~~g~~  263 (457)
                      ++++++++++++||||.+++   +++|+++|+++++++|.|++|..-.    ...   .+... +..+++.|++|.++.+
T Consensus       170 ~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~p  249 (418)
T d1w7la_         170 SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSAT  249 (418)
T ss_dssp             TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCG
T ss_pred             ccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCC
Confidence            99999999999999999987   6788899999999999999986421    111   22221 3468899999966644


Q ss_pred             C--ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHh
Q 040741          264 G--VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAK-------KEMDYDHKRITALHDRLLNGIK  334 (457)
Q Consensus       264 G--~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-------~~~~~~~~~~~~~~~~l~~~l~  334 (457)
                      |  +|+++++++.+.++.......       ....+.....++..++....       +.+....+.++++++.+.+.|.
T Consensus       250 G~RvG~~v~~~~~~~~l~~~~~~~-------~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~  322 (418)
T d1w7la_         250 GWKVGWVLGPDHIMKHLRTVHQNS-------VFHCPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQ  322 (418)
T ss_dssp             GGCCEEEECCHHHHHHHHHHHHTT-------TSCCCHHHHHHHHHHHHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccchhhhhhhccccccc-------cccccchhhHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Confidence            4  999999887655554433211       11333333343333443221       1256777888888999999998


Q ss_pred             hcCCCeEEeCCCCCcccceEEEEEcc--------------ccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCC
Q 040741          335 EKLDGVVVNGSMERRYIGNLNLSFAY--------------VEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGV  397 (457)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~  397 (457)
                      +  .++.+..+ +.  +.++.+.++.              ..+.++...|   +||.+.+|+.|...       -.    
T Consensus       323 ~--~g~~~~~P-~g--g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~PG~~F~~~-------~~----  386 (418)
T d1w7la_         323 S--VGLKPLIP-QG--SYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSV-------PH----  386 (418)
T ss_dssp             T--TTCEEEEC-SB--SSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCH-------HH----
T ss_pred             h--cCCcccCC-Cc--eeEEEEECcccccccchhccccccccHHHHHHHHHHHCCEEEEcchhhcCC-------Cc----
Confidence            8  47776643 22  3334444421              1123455554   59999999866431       00    


Q ss_pred             CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          398 DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       398 ~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                       .....++|||++.  .+++++++++++|++..
T Consensus       387 -~~~~~~~iRis~~--~~~~~l~~a~~rl~~~~  416 (418)
T d1w7la_         387 -QKHFDHYIRFCFV--KDEATLQAMDEKLRKWK  416 (418)
T ss_dssp             -HTTSCSEEEEECC--CCHHHHHHHHHHHHHHH
T ss_pred             -cCCCCCEEEEEEc--CCHHHHHHHHHHHHHHh
Confidence             1123479999986  47889999999987754

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.93  E-value=2.1e-24  Score=207.24  Aligned_cols=311  Identities=15%  Similarity=0.152  Sum_probs=224.7

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G  170 (457)
                      .+.|++...+....+++.++++-|.+.  ++.++||..|+..++.+++    ++||+|+++...|.+....++.. .+.|
T Consensus        50 ~~~Y~R~~nPT~~~LE~~la~LEg~~~--a~~~~SGmaAi~~~l~~l~----~~Gd~vl~~~~~Yg~t~~l~~~~~~~~G  123 (392)
T d1gc0a_          50 GHFYSRISNPTLNLLEARMASLEGGEA--GLALASGMGAITSTLWTLL----RPGDEVLLGNTLYGCTFAFLHHGIGEFG  123 (392)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEESSCCSHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCcc--eeehhhHHHHHHHHHHhhc----cCCCeeecccccchhhhhhhhhhhccCC
Confidence            345666666899999999999999765  8889999999999999999    89999999999999988877644 6779


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCccc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVS  250 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~D  250 (457)
                      +++.+++..     |+++++++++++|++|+++.+.||+..+.|+++|+++||++|+++++|.+.+-+.. ...-++|+|
T Consensus       124 i~~~~~d~~-----d~~~~~~ai~~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDnT~atP~~-~~Pl~~GaD  197 (392)
T d1gc0a_         124 VKLRHVDMA-----DLQALEAAMTPATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYL-QRPLELGAD  197 (392)
T ss_dssp             CEEEEECTT-----CHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHH-CCGGGGTCS
T ss_pred             cccccCCcc-----CHHHHHHhCCCCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEecCccCccc-cChHHhCCC
Confidence            999999866     89999999999999999999999999999999999999999999999999875533 122345899


Q ss_pred             EEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          251 LMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       251 i~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      +++-|.+|++++-+   .|+++++++...+++....     +....+.+++..+.-+...+    +.+.-++++..+++.
T Consensus       198 ivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~-----~~~~G~~~~p~da~ll~rgl----~TL~lRm~~~~~nA~  268 (392)
T d1gc0a_         198 LVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGL-----KDMTGAVLSPHDAALLMRGI----KTLNLRMDRHCANAQ  268 (392)
T ss_dssp             EEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHH-----HHHTCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             EEEEecceeecCCcccccccccchhHHHHHHHHHHH-----HHccCCcCChhhHHHHHhcc----ccHHHHHHHHHHHHH
Confidence            99999999665332   6888887765443321110     00112355655555443332    357888889999999


Q ss_pred             HHHHHHhhcCCCeEEe-CC--C-----------CCcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCC
Q 040741          328 RLLNGIKEKLDGVVVN-GS--M-----------ERRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SAS  385 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~-~~--~-----------~~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~  385 (457)
                      .+.+.|++ .|.+.-+ -+  +           ....++++.|.+.+-  ....++..|+  .++.+-|...+    +..
T Consensus       269 ~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~gg~~sf~l~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~pa~  347 (392)
T d1gc0a_         269 VLAEFLAR-QPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKGGIGAGRRFMNALQLFSRAVSLGDAESLAQHPAS  347 (392)
T ss_dssp             HHHHHHHT-CTTEEEEEEC----------------CCTTEEEEEETTHHHHHHHHHHHCSSSEECSCCSCSSCEEECGGG
T ss_pred             HHHHHHHh-CCCccEEeeccccCCcccccccccccCCCcEEEEEEeCCHHHHHHHHHhCCcceEeeccCCcChhhcCccc
Confidence            99999998 7776432 21  1           112367777777532  1245666664  45566665522    221


Q ss_pred             C----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          386 L----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       386 ~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .    .+.-.....|+++    +.|||+++.    ||++.+++.|+++++.
T Consensus       348 ~th~~~~~e~r~~~Gi~~----~liRlSVGl----Ed~eDLi~Dl~~AL~a  390 (392)
T d1gc0a_         348 MTHSSYTPEERAHYGISE----GLVRLSVGL----EDIDDLLADVQQALKA  390 (392)
T ss_dssp             TTTSSSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHcCCCc----CeEEEEeee----CCHHHHHHHHHHHHHh
Confidence            1    2233566778876    899999996    7888888888888764

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=3e-24  Score=205.69  Aligned_cols=304  Identities=17%  Similarity=0.110  Sum_probs=216.6

Q ss_pred             CCcEEecCCCCC-CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhC---CCCCcEEEeCChHHHH
Q 040741           56 GRPLYLDMQATT-PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIG---ASPKEIIFTSGATESN  131 (457)
Q Consensus        56 ~~~i~l~~~~~~-~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g---~~~~~i~~t~g~T~a~  131 (457)
                      .+-++|+.+.+. ++|+.+++++.+.+....      .+.+   ......++|+.++++++   +++++|++|+|+++++
T Consensus        19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~------~~~y---p~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l   89 (334)
T d2f8ja1          19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDA------LRIY---YDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEII   89 (334)
T ss_dssp             CCSEECSSCCCSSCCCHHHHHHHHHHCCTTG------GGSC---CCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHH
T ss_pred             CCceEEECCCCCCCCCHHHHHHHHHHhhcch------hcCC---CCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHH
Confidence            567899988665 888999999888774311      0001   01234578889999886   4678899999999988


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEecccccccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGV  211 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~  211 (457)
                      .++++        .+|+|++..+.|..+...++.+   |++++.++.+.++..+     ++..++++++++++++||+|.
T Consensus        90 ~~l~~--------~~d~v~i~~P~y~~~~~~~~~~---g~~~v~v~~~~~~~~~-----~~~~~~~~~l~l~nP~NPtG~  153 (334)
T d2f8ja1          90 YVMML--------MFDRSVFFPPTYSCYRIFAKAV---GAKFLEVPLTKDLRIP-----EVNVGEGDVVFIPNPNNPTGH  153 (334)
T ss_dssp             HHHHH--------HSSEEEECSSCCHHHHHHHHHH---TCCEEECCCCTTSCCC-----CCCCCTTEEEEEESSCTTTCC
T ss_pred             HHHhh--------hccccccccccccccccchhcc---CCcccccccccccccc-----ccccccceEEEecccccccce
Confidence            76543        4589999999999998888877   9999999998665443     234578899999999999999


Q ss_pred             ccChHHHHHHHHhcCCcEEEehhhhcCCC---cccCCCCcccEEEeccccccCCCC--ceEEEEecCCCccccccccCCc
Q 040741          212 IQPMEEIGQICKEFKIPFHTDAAQALGKI---PVDVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRPRIRVEPLINGGG  286 (457)
Q Consensus       212 ~~~l~~i~~l~~~~~v~li~D~a~~~g~~---~~~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~~~~~~~~~~~~~  286 (457)
                      +++.+++.+++ ++++++++|+++.....   .......+.-+++.|++|.+|.+|  +|+++++++.+.++......  
T Consensus       154 ~~s~~~l~~~~-~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~~~~~i~~l~~~~~~--  230 (334)
T d2f8ja1         154 VFEREEIERIL-KTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVASEKFIDAYNRVRLP--  230 (334)
T ss_dssp             CCCHHHHHHHH-TTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEECHHHHHHHHHHSCT--
T ss_pred             eecHHHhhccc-cceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhcccchHHHHHHHHhhcc--
Confidence            99988887764 57899999998753221   111222234588899999777554  99999988776666544321  


Q ss_pred             cccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccccchHH
Q 040741          287 QERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYVEGESL  366 (457)
Q Consensus       287 ~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  366 (457)
                             ...+.....++.+.+.. .+.+++..+++++.++++.+.|++ + |+.+..+ .   ++++.+.++..+...+
T Consensus       231 -------~~~s~~~~~~a~~~l~~-~~~~~~~~~~~~~~r~~l~~~L~~-~-g~~~~~~-~---g~f~~~~~~~~~~~~~  296 (334)
T d2f8ja1         231 -------FNVSYVSQMFAKVALDH-REIFEERTKFIVEERERMKSALRE-M-GYRITDS-R---GNFVFVFMEKEEKERL  296 (334)
T ss_dssp             -------TCSCHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHH-H-TCEECCC-C---SSEEEEECCHHHHHHH
T ss_pred             -------cccchhhhhhccccccc-ccchhhHHHHHHHHHHHHHHHHHH-C-CCeECCC-C---ceEEEEECCCCCHHHH
Confidence                   13344444433333332 335677788889999999999999 4 7777643 2   3455566665566667


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      .+.|  +||.+++..                        ++|||+++   +.||+++++++|++
T Consensus       297 ~~~L~~~GI~vr~~~------------------------~~vRis~g---~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         297 LEHLRTKNVAVRSFR------------------------EGVRITIG---KREENDMILRELEV  333 (334)
T ss_dssp             HHHHHHTTEECEEET------------------------TEEEEECC---CHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCEECCCC------------------------CeEEEEcC---CHHHHHHHHHHHhc
Confidence            6666  688875321                        79999987   57889999888875

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.92  E-value=3.9e-23  Score=198.38  Aligned_cols=308  Identities=14%  Similarity=0.146  Sum_probs=230.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+....+++.++++-|.+.  .++++||..|+..++.+++    ++||+|++....|.+....+. .+.+.|+
T Consensus        55 ~~Y~R~~nPT~~~LE~~la~LEgg~~--a~~~sSGmaAi~~~l~~ll----~~Gd~vi~~~~~Yg~t~~~~~~~l~~~Gi  128 (397)
T d1y4ia1          55 YIYTRLGNPTTDALEKKLAVLERGEA--GLATASGISAITTTLLTLC----QQGDHIVSASAIYGCTHAFLSHSMPKFGI  128 (397)
T ss_dssp             SCCCTTSCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEESSSCHHHHHHHHTHHHHTTC
T ss_pred             ceeeCCCCHHHHHHHHHHHHHhCCcc--ceeehHHHHHHHHHHhhcc----CCCCeeeeecccccccchhhhcccCCCce
Confidence            45666667899999999999999865  8889999999999999999    899999999999998888776 4567899


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++.+++..     |+++++++|+++|++|+++.+.||+..+.++++|+++|+++|+++++|.+.+.+... ..-+.|+|+
T Consensus       129 ~~~~vd~~-----d~~~~~~~i~~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDnT~atP~~~-~Pl~~GaDi  202 (397)
T d1y4ia1         129 NVRFVDAG-----KPEEIRAAMRPETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQ-QPLQLGADI  202 (397)
T ss_dssp             EEEEECTT-----SHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-CGGGGTCSE
T ss_pred             EeeccCCC-----CHHHHHHhcCCCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecCcccCcccC-cchhcCCCE
Confidence            99999866     899999999999999999999999999999999999999999999999998765432 233558999


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCcccc--ccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRIRVE--PLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      ++-|.+|++|.-+   .|+++++++.+.+.+  ....       ...+.+++..+.-+...+    +.+.-++++..+++
T Consensus       203 vihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~-------~~G~~l~p~~a~l~~rgl----~TL~lRm~~~~~nA  271 (397)
T d1y4ia1         203 VVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKD-------ITGGCMSPFNAWLTLRGV----KTLGIRMERHCENA  271 (397)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHH-------TTCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHH
T ss_pred             EEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHh-------CcCCcCCHHHHHHHHcCc----CcHHHHHHHHHHHH
Confidence            9999999654332   688888876544322  1111       112355555444333322    35778889999999


Q ss_pred             HHHHHHHhhcCCCeEEe-CCC--C-----------CcccceEEEEEccc-c-chHHHhccc--CeEecccCcc----CCC
Q 040741          327 DRLLNGIKEKLDGVVVN-GSM--E-----------RRYIGNLNLSFAYV-E-GESLLMGLK--EVAVSSGSAC----TSA  384 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~-~~~--~-----------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~----~~~  384 (457)
                      ..+.+.|++ .|.+.-+ -+.  .           ...++++.|.+.+- + ...++..|+  .++++-|..-    .+.
T Consensus       272 ~~lA~~L~~-hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~~sf~~~~~~~~~~~f~~~L~l~~~a~SlGg~eSLi~~p~  350 (397)
T d1y4ia1         272 LKIARFLEG-HPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGLEAGRRMINSVELCLLAVSLGDTETLIQHPA  350 (397)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEECSCCSCSSCEEECTT
T ss_pred             HHHHHHHHh-CCCcCeEeCCCCCCCccccccccccCCCCeEEEEEecCCHHHHHHHHHcCCccceeeccCcccceeeCcc
Confidence            999999999 8887433 221  1           12477777777642 1 246666664  4555556542    233


Q ss_pred             CCC----hhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          385 SLE----PSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       385 ~~~----~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+.    +.-.....|+++    +.|||+++.    ||+|.+++.|++++++
T Consensus       351 ~~th~~~~~e~r~~~Gi~~----~liRlsvGl----Ed~~DLi~Dl~~AL~~  394 (397)
T d1y4ia1         351 SMTHSPVAPEERLKAGITD----GLIRLSVGL----EDPEDIINDLEHAIRK  394 (397)
T ss_dssp             TTTTSSSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHH
Confidence            222    233456678776    899999997    7888888888888875

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.92  E-value=1.9e-24  Score=214.77  Aligned_cols=299  Identities=14%  Similarity=0.097  Sum_probs=203.4

Q ss_pred             HHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeC---
Q 040741          102 AVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPV---  178 (457)
Q Consensus       102 ~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~---  178 (457)
                      ...++..++.+++|.+........|+++++.+++.+....  .+++.||+++..|+++..++..+   |+.++.++.   
T Consensus       114 ~~~~~~~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~--~~~~~vi~s~~~H~s~~k~~~~~---g~~~~~v~~~~~  188 (434)
T d2z67a1         114 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK--YGSNVVIYPYASHKSPIKAVSFV---GMNMRLVETVLD  188 (434)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH--HCCCEEEEECCCCHHHHHHHHHT---TCEEEEECCEEE
T ss_pred             HHHHHHHHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh--hcCceEEEeccCCHHHHHHHHHh---CCcceEEEeecC
Confidence            4445667788899987654455555666666777766532  47899999999999999998777   888888764   


Q ss_pred             CCCCCCCHHHHHHhcCC-----CceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCC-----cccCCCCc
Q 040741          179 GADGIVNLDELRAAIRP-----DTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKI-----PVDVEKWN  248 (457)
Q Consensus       179 ~~~~~~d~~~le~~i~~-----~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~-----~~~~~~~~  248 (457)
                      +.++.+|+++|+++|++     ++.+|++..+++++|.+.|+++|+++|++||+++|+|+||+.+..     +......+
T Consensus       189 ~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~~~~~~~~~~  268 (434)
T d2z67a1         189 GDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYR  268 (434)
T ss_dssp             TTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHTSC
T ss_pred             CCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhhhhccccccccccCC
Confidence            35578999999999964     677889999999999999999999999999999999999986542     22234557


Q ss_pred             ccEEEecccc-ccCCCCceEEEEecC-CCccccccccCCccccccccCCCChhHHHHHHHHHH-HHHHhhHHHHHHHHHH
Q 040741          249 VSLMSLSGHK-IYGPKGVGALYMRRR-PRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE-IAKKEMDYDHKRITAL  325 (457)
Q Consensus       249 ~Di~~~s~~K-~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~-~~~~~~~~~~~~~~~~  325 (457)
                      +|++++|+|| +++|.|.|+++.+++ .++++.+...+          +.+......+.+++. +..+++....++..++
T Consensus       269 ~D~~~~s~hK~l~~~~g~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~~  338 (434)
T d2z67a1         269 VDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPG----------RASATPVVNTLVSLLSMGSKNYLELVKNQKNS  338 (434)
T ss_dssp             CSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCS----------CBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEcCccccccCCCccccccCcHHHHHHHHhhccc----------ccccchHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            9999999999 567888888888764 22233322221          222222222223333 3344678888888888


Q ss_pred             HHHHHHHHhhcC---CCeEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCcc
Q 040741          326 HDRLLNGIKEKL---DGVVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDED  400 (457)
Q Consensus       326 ~~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~  400 (457)
                      ++++++.|++ +   .+..+...+   ....+.+.+. .+..++...|  +||.   |..+.......     .......
T Consensus       339 a~~l~~~L~~-l~~~~g~~ll~~~---~~~~~~~~~~-~~~~~l~~~L~~~gI~---g~~v~~~l~~~-----g~~~~~~  405 (434)
T d2z67a1         339 KKLLDELLND-LSKKTGGKFLDVE---SPIASCISVN-SDPVEIAAKLYNLRVT---GPRGIKKTDHF-----GNCYLGT  405 (434)
T ss_dssp             HHHHHHHHHH-HHHHSSCCBCCCC---CSSEEEEECS-SCHHHHHHHHHHTTEE---SCEEECTTCHH-----HHTCSSC
T ss_pred             HHHHHHHHHH-hhhhcCceecCCC---CCceeeeecC-CCHHHHHHHHHHcCCe---eeehhhhcccc-----Ceeeecc
Confidence            8888888776 3   344444332   2333344443 4566666666  4553   22222111111     1111223


Q ss_pred             CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          401 MAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       401 ~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ..++.+|++++..+|+||||+++++|++
T Consensus       406 ~~~~~l~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         406 YTHDYIVMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             CSCCEEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             cCCCeEEEecCCCCCHHHHHHHHHHHhc
Confidence            4458999999999999999999999986

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.92  E-value=5e-24  Score=203.41  Aligned_cols=319  Identities=14%  Similarity=0.161  Sum_probs=209.2

Q ss_pred             EecCCC--CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHH
Q 040741           60 YLDMQA--TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKG  137 (457)
Q Consensus        60 ~l~~~~--~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~  137 (457)
                      +|||.+  +++++|+|++||.+....         +..+|...+.++++++++++++|.+ .+++||+|||+|++.++..
T Consensus         4 ~~~f~s~n~~g~~P~v~~A~~~a~~~---------~~~~~~~~~~~~~l~~~la~~~g~~-~~v~f~~sGt~An~~a~~~   73 (345)
T d1v72a1           4 ALGFSSDNIAGASPEVAQALVKHSSG---------QAGPYGTDELTAQVKRKFCEIFERD-VEVFLVPTGTAANALCLSA   73 (345)
T ss_dssp             CCBCSCGGGCCCCHHHHHHHHHTTSS---------CCCSTTCSHHHHHHHHHHHHHHTSC-CEEEEESCHHHHHHHHHHT
T ss_pred             CcCcCCCCCCCCCHHHHHHHHHHhcc---------CccccCCCHHHHHHHHHHHHHHCCC-cEEEECCchHHHHHHHHHH
Confidence            455554  447899999999886432         2223444578899999999999985 4699999999999999998


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCc------e-EEEEeccccccc
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDT------G-LISVMAVNNEIG  210 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t------~-li~i~~~~~~~G  210 (457)
                      +.    ..++.+++....|.+...........+..+..++...++..|++.++..+.+.+      . .++.....++.|
T Consensus        74 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (345)
T d1v72a1          74 MT----PPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVG  149 (345)
T ss_dssp             SC----CTTEEEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTS
T ss_pred             HH----hcCCccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeecccccc
Confidence            88    788899999999988887776666778888888877888899999999997542      2 233333334444


Q ss_pred             cc---cChHHHHHHHHhcCCcEEEehhhhcCCCcc-----cCCCC--cccEEEeccccccCCCCceEEEEecCCCccccc
Q 040741          211 VI---QPMEEIGQICKEFKIPFHTDAAQALGKIPV-----DVEKW--NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEP  280 (457)
Q Consensus       211 ~~---~~l~~i~~l~~~~~v~li~D~a~~~g~~~~-----~~~~~--~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~  280 (457)
                      ..   .+++++.++|++||+++|+|+++..+....     .....  ..+.++.+.+|.++.. .+..............
T Consensus       150 ~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  228 (345)
T d1v72a1         150 SIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLA-AEAIVLFNTSLATEMS  228 (345)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCSS-CEEEEESSGGGHHHHH
T ss_pred             ccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCcccccccc-ccccccchhhhhhhcc
Confidence            44   447788889999999999999997533221     11111  2344555544433333 3444433221111100


Q ss_pred             cccCCccccccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc
Q 040741          281 LINGGGQERGIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA  359 (457)
Q Consensus       281 ~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  359 (457)
                      .      ......++.+....++.. +..... ....+...+..++.+++.+.+.+ ++++.+.++..   .+++.+.++
T Consensus       229 ~------~~~~~~~~~~~~~~aa~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~g~~~~~p~~---~niv~~~~~  297 (345)
T d1v72a1         229 Y------RRKRAGHLSSKMRFLSAQ-IDAYLTDDLWLRNARKANAAAQRLAQGLEG-LGGVEVLGGTE---ANILFCRLD  297 (345)
T ss_dssp             H------HHHHTTCCCSSTHHHHHH-HHHHTSTTHHHHHHHHHHHHHHHHHHHHTT-CTTEEEESCCC---SSEEEEEEC
T ss_pred             c------cccccccccchhhHHhhh-hHHHHHHhhhhhhccchhhHHHHHHHHHHh-cCCcEeccCCC---ccEEEEEcC
Confidence            0      001112233333333222 222222 23566777778888899999999 89999886543   345555554


Q ss_pred             cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHH
Q 040741          360 YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQ  429 (457)
Q Consensus       360 ~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~  429 (457)
                          ......|  +|+.+..+                     ..+++.|||+++..+|+||||+++++|+++
T Consensus       298 ----~~~~~~L~~~gi~v~~~---------------------~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         298 ----SAMIDALLKAGFGFYHD---------------------RWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             ----HHHHHHHHHTTCBCBCS---------------------SSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             ----HHHHHHHHHcCCCcccc---------------------CCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence                2334444  57665432                     123489999999999999999999999875

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.90  E-value=5.2e-22  Score=193.41  Aligned_cols=335  Identities=16%  Similarity=0.169  Sum_probs=227.8

Q ss_pred             CCCHHHHHHHHHHHhhc--cCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCC
Q 040741           68 PVDPRVLDAMLPFYLSR--YGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDK  145 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~  145 (457)
                      .++.+.++++.+.+.+.  +-+.       |    +.+.++|+++++++|.+.  ++++++||.|+.++++++..   ++
T Consensus        10 ~~~~~~~~~~~~~l~~g~~~~~~-------g----~~v~~fE~~~a~~~g~~~--~v~~~SGt~Al~lal~~l~~---~~   73 (384)
T d1b9ha_          10 QYDDAERNGLVRALEQGQWWRMG-------G----DEVNSFEREFAAHHGAAH--ALAVTNGTHALELALQVMGV---GP   73 (384)
T ss_dssp             CCCHHHHHHHHHHHHTSCCBTTT-------C----SHHHHHHHHHHHHTTCSE--EEEESCHHHHHHHHHHHTTC---CT
T ss_pred             CCCHHHHHHHHHHHHcCCeeecC-------C----HHHHHHHHHHHHHHCcCe--EEEeCCHHHHHHHHHHHcCC---CC
Confidence            45677888999998753  1111       1    578899999999999875  99999999999999998753   89


Q ss_pred             CCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh
Q 040741          146 KRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG-ADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE  224 (457)
Q Consensus       146 g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~  224 (457)
                      ||+||++..+|+++..++...   |+++++++++ .++.+|++.+++.++++|+.|++.+.   .|...++++|.++|++
T Consensus        74 gdeVi~p~~t~~a~~~ai~~~---g~~p~~~d~~~~~~~~d~~~~~~~i~~~tk~i~~~~~---~g~~~d~~~i~~~~~~  147 (384)
T d1b9ha_          74 GTEVIVPAFTFISSSQAAQRL---GAVTVPVDVDAATYNLDPEAVAAAVTPRTKVIMPVHM---AGLMADMDALAKISAD  147 (384)
T ss_dssp             TCEEEEESSSCTHHHHHHHHT---TCEEEEECBCTTTCCBCHHHHHHHCCTTEEEECCBCG---GGCCCCHHHHHHHHHH
T ss_pred             CCEEEEecccccccccccccc---ccccccccccccccccchhhhcccccccccccccccc---cccccccccchhhhhh
Confidence            999999999999999998777   9999999988 45789999999999999999887665   7889999999999999


Q ss_pred             cCCcEEEehhhhcCCCccc--CCCC-cccEEEeccccccCCCCceEEEEecCCC-ccccccccCC-ccc---cccc---c
Q 040741          225 FKIPFHTDAAQALGKIPVD--VEKW-NVSLMSLSGHKIYGPKGVGALYMRRRPR-IRVEPLINGG-GQE---RGIR---S  293 (457)
Q Consensus       225 ~~v~li~D~a~~~g~~~~~--~~~~-~~Di~~~s~~K~~g~~G~G~l~~~~~~~-~~~~~~~~~~-~~~---~~~~---~  293 (457)
                      +++++|.|+||+.|+..-+  +... ...+++++.+|.++..+.|+++++++.. ++++.....+ +..   ..+.   .
T Consensus       148 ~~i~lieD~a~a~ga~~~g~~~g~~g~~~~~Sf~~~K~i~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  227 (384)
T d1b9ha_         148 TGVPLLQDAAHAHGARWQGKRVGELDSIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA  227 (384)
T ss_dssp             HTCCBCEECTTCTTCEETTEEGGGSSSCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred             hhhhhhhhhceecccccCCEecCcccccceecccccccccccccchhhhhhHHHHHHHHHHHhcCCCCcccccccccccc
Confidence            9999999999999875321  1111 2445666668965544348888876533 2333222211 110   0000   0


Q ss_pred             C-CCChhHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCC---cccceEEEEEcccc---chH
Q 040741          294 G-TLPTPLIVGFGSACEIA-KKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMER---RYIGNLNLSFAYVE---GES  365 (457)
Q Consensus       294 ~-t~~~~~~~al~~al~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~  365 (457)
                      | ..-+..+.   +|+... .+.+++..++.+++++++.+.|.+ ++++.....+..   .......+.++...   .++
T Consensus       228 G~n~rms~l~---Aaig~~qL~~ld~~~~~R~~~~~~y~~~L~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Rd~  303 (384)
T d1b9ha_         228 GSNMRLNEFS---ASVLRAQLARLDEQIAVRDERWTLLSRLLGA-IDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNA  303 (384)
T ss_dssp             CCBCBCBHHH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT-STTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHH
T ss_pred             ccccccccch---hhhhhhhhhhcccchhhhhhhhhhhhhhhhc-ccccccccccccccccccccccceecccccccHHH
Confidence            1 00111122   122111 235778888889999999999999 888766543321   11223334444332   235


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCC--------------ccCCCCeEEEecCCCCC-HHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD--------------EDMAHTSIRFGIGRFTT-EAEVDRAIELTVK  428 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~--------------~~~~~~~iRi~~~~~~t-~edid~~~~~l~~  428 (457)
                      +...|  +||.+...  +.+....|  ..+.+|..              +....+.|.+.+....| ++|++++++.|++
T Consensus       304 l~~~L~~~GI~~~~~--y~plh~~~--~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~  379 (384)
T d1b9ha_         304 LVDRLVEAGLPAFAA--FRAIYRTD--AFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD  379 (384)
T ss_dssp             HHHHHHHTTCCEEEC--CCCGGGSH--HHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCeeee--CcchhcCH--HHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence            77777  57766543  32221222  22333322              22234679999888776 6799999999999


Q ss_pred             HHHH
Q 040741          429 QVEK  432 (457)
Q Consensus       429 ~~~~  432 (457)
                      ++++
T Consensus       380 ~l~~  383 (384)
T d1b9ha_         380 AVAR  383 (384)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9874

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=3.5e-22  Score=191.35  Aligned_cols=310  Identities=13%  Similarity=0.089  Sum_probs=225.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~  171 (457)
                      +.|++...+....+++.++++-|.+.  ++.++||..|+..++.+++    ++|++|++....|.+....+... ...|.
T Consensus        42 ~~Y~R~~nPt~~~le~~la~LEgg~~--a~~~sSGMaAi~~~l~~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g~  115 (384)
T d1cs1a_          42 HDYSRRGNPTRDVVQRALAELEGGAG--AVLTNTGMSAIHLVTTVFL----KPGDLLVAPHDCYGGSYRLFDSLAKRGCY  115 (384)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEETTCCHHHHHHHHHHHTTTSC
T ss_pred             CcccCCCCHHHHHHHHHHHHHhCCCc--eEEecChHHHHHHHHhhcc----cccceecccccccchhhhhhhhhhccccc
Confidence            34555556889999999999999765  8999999999999999998    89999999999988887766644 45688


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++.+++..     |.+++++++.++|++|+++.+.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-++|+|+
T Consensus       116 ~~~~~d~~-----d~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT~atP~~-~~Pl~~GaDi  189 (384)
T d1cs1a_         116 RVLFVDQG-----DEQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPAL-QNPLALGADL  189 (384)
T ss_dssp             EEEEECTT-----CHHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCGGGGTCSE
T ss_pred             ccccccCC-----CHHHHHhhccccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEeccccCccc-ccccccCCCE
Confidence            88888765     88999999999999999999999999999999999999999999999999876533 2333568999


Q ss_pred             EEeccccccCCCC---ceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++-|.+|+++.-|   .|+++.+++.. .++......       ...+.++.....+...    .+.+.-++++..+++.
T Consensus       190 VvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~-------~G~~~~p~~a~ll~rg----L~TL~lRm~~~~~nA~  258 (384)
T d1cs1a_         190 VLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANN-------IGVTGGAFDSYLLLRG----LRTLVPRMELAQRNAQ  258 (384)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHH-------HTCBCCHHHHHHHHHH----HTTHHHHHHHHHHHHH
T ss_pred             EEEccccccccCCCcccccccCCchhhhhhhhhhhhh-------hhhccccccHHHHhhc----cchhHHHHHHHHHHHH
Confidence            9999999765433   57777755322 222221111       1124444444433222    2357888899999999


Q ss_pred             HHHHHHhhcCCCeEEeCCC---C-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccC----CCC
Q 040741          328 RLLNGIKEKLDGVVVNGSM---E-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACT----SAS  385 (457)
Q Consensus       328 ~l~~~l~~~~~~~~~~~~~---~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~----~~~  385 (457)
                      .+.+.|++ .|.+.-+-.|   .           ...++++.+.+.+-  ....+++.|+  .++++-|...+    +..
T Consensus       259 ~lA~~L~~-hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~sf~l~~~~~~a~~f~~~L~l~~~a~SlGg~eSLi~~p~~  337 (384)
T d1cs1a_         259 AIVKYLQT-QPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLISHAAT  337 (384)
T ss_dssp             HHHHHHTT-CTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESSCHHHHHHHHHTCSSSEEBSCCCSSSCEEEEGGG
T ss_pred             HHHHhccc-CCceeeeeeccccchhHHHHHHhhcCCCcceeEEeecchHHHHHHHHHhCCcceeccccCCccceeccccc
Confidence            99999999 7887443221   1           12366777776542  1245666664  44555555422    222


Q ss_pred             C----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          386 L----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       386 ~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .    .+.-.....|+++    +.||++++.    ||+|.+++.|+++++..+
T Consensus       338 ~th~~~~~e~r~~~Gi~~----~lvRlSvGl----Ed~eDLi~Dl~~AL~aa~  382 (384)
T d1cs1a_         338 MTHAGMAPEARAAAGISE----TLLRISTGI----EDGEDLIADLENGFRAAN  382 (384)
T ss_dssp             TTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHHHHHT
T ss_pred             cccccCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHHHHHhc
Confidence            2    2234556788876    899999997    889999999999998764

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.90  E-value=7.3e-23  Score=198.30  Aligned_cols=187  Identities=14%  Similarity=0.070  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHhCCCC-CcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEc-CCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741          102 AVETARSQIADLIGASP-KEIIFTSGATESNNVSIKGVMHFYKDKKRHVITT-QTEHKCVLDSCRHLQQEGFEITYLPVG  179 (457)
Q Consensus       102 ~~~~~~~~la~~~g~~~-~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~-~~~h~~~~~~~~~~~~~G~~v~~v~~~  179 (457)
                      ...++++..++.++.++ +++++++||++|+..++.++.    ++++.++++ .+.|+++..+++.+   |+++  ++.+
T Consensus        51 ~~~~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al~----~~~~vi~~~~~~~~~~~~~~~~l~---g~~~--v~~~  121 (366)
T d2aeua1          51 FAEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILALK----PKKVIHYLPELPGHPSIERSCKIV---NAKY--FESD  121 (366)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHC----CSEEEEECSSSSCCTHHHHHHHHT---TCEE--EEES
T ss_pred             hHHHHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHhC----CCCEEEEecCCCcchhHHHHHHhc---CCeE--ECCC
Confidence            44567777888888754 469999999999999998865    444444444 57899999988876   8765  4444


Q ss_pred             CCCCCCHHHHHHhcCCCceEEEEeccccc-cccccChHHHHHHHHhcCCcEEEehhhhcCCCcc----cCCCCcccEEEe
Q 040741          180 ADGIVNLDELRAAIRPDTGLISVMAVNNE-IGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPV----DVEKWNVSLMSL  254 (457)
Q Consensus       180 ~~~~~d~~~le~~i~~~t~li~i~~~~~~-~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~----~~~~~~~Di~~~  254 (457)
                           |+++++++|+++|++|++.+++|+ ++.+.++++|+++|++||+++++|++|+.+....    .....++|++++
T Consensus       122 -----d~e~l~~~i~~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~~~~~~~~~~~di~~~  196 (366)
T d2aeua1         122 -----KVGEILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVT  196 (366)
T ss_dssp             -----CHHHHHTTCCTTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEE
T ss_pred             -----CHHHHHHhcCCCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCccccccccccCCCHhhcCceEEEe
Confidence                 899999999999999999999886 4567889999999999999999999998543221    112347899999


Q ss_pred             ccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHH
Q 040741          255 SGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE  309 (457)
Q Consensus       255 s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~  309 (457)
                      |++|.+|+.++|+++++++.++++.......       ..+.+++...++..+++
T Consensus       197 S~sK~~~g~~~G~i~~~~~~i~~~~~~~~~~-------g~~~~~~~~~a~~~aL~  244 (366)
T d2aeua1         197 STDKLMEGPRGGLLAGKKELVDKIYIEGTKF-------GLEAQPPLLAGIYRALK  244 (366)
T ss_dssp             ETTSSSSSCSCEEEEEEHHHHHHHHHHHHTT-------TCBCCHHHHHHHHHHHH
T ss_pred             cccccccccceeEEEecHHHHHHHHHHHhcc-------cccCCHHHHHHHHHHHH
Confidence            9999766556799999998877766544321       12445555555555654

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=8.4e-22  Score=189.53  Aligned_cols=313  Identities=13%  Similarity=0.129  Sum_probs=222.4

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~  171 (457)
                      +.|++...+....+++.++++-|.+.  ++.++||..|+..++.+++    ++|++|++....|.+....+.. +...|+
T Consensus        50 ~~Y~R~~nPt~~~le~~la~LEg~~~--a~~~~SGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~T~~l~~~~l~~~Gi  123 (391)
T d1cl1a_          50 LFYGRRGTLTHFSLQQAMCELEGGAG--CVLFPCGAAAVANSILAFI----EQGDHVLMTNTAYEPSQDFCSKILSKLGV  123 (391)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEETTSCHHHHHHHHHTGGGGTC
T ss_pred             eEeECCCChhHHHHHHHHHHHhCCcc--EEEeccccceeeehhhccc----CCCCeEEEecccccchhhhhhhccccccc
Confidence            45666667899999999999999765  8999999999999999998    8999999999999999888775 577899


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhc--CCcEEEehhhhcCCCcccCCCCcc
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEF--KIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~--~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      ++.+++..     |.++++++++++|++|+++.+.||+..+.|+++|+++|+++  |+++++|.+.+.+.. .+.-+.|+
T Consensus       124 ~~~~~d~~-----d~~~~~~~i~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVDnT~atP~~-~~Pl~~Ga  197 (391)
T d1cl1a_         124 TTSWFDPL-----IGADIVKHLQPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVL-FKALDFGI  197 (391)
T ss_dssp             EEEEECTT-----CGGGGGGTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTS-SCGGGGTC
T ss_pred             ccccccCc-----cccccccccccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEeccccchhh-hccccccc
Confidence            99999865     78999999999999999999999999999999999999775  999999999876543 23334689


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++-|.+|+++.-+   .|+++.+++...++.....       ...+++++..+.-+...    .+.+.-++++..+++
T Consensus       198 DivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~-------~~G~~~~p~~a~ll~rg----l~TL~lR~~~~~~nA  266 (391)
T d1cl1a_         198 DVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAY-------LMGQMVDADTAYITSRG----LRTLGVRLRQHHESS  266 (391)
T ss_dssp             SEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHH-------HTTCCCCHHHHHHHHHH----HTTHHHHHHHHHHHH
T ss_pred             ceEEeecchhccccccccccceeccccccccchhhhh-------cccccCCchhhhhhhcc----chhHHHHHHHHHHHH
Confidence            999999999655332   5777776654444332221       11234554443322222    235788889999999


Q ss_pred             HHHHHHHhhcCCCeEEeCCCC--------------CcccceEEEEEccc-cch---HHHhccc--CeEecccCccCCCCC
Q 040741          327 DRLLNGIKEKLDGVVVNGSME--------------RRYIGNLNLSFAYV-EGE---SLLMGLK--EVAVSSGSACTSASL  386 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~---~~~~~l~--~i~~~~g~~~~~~~~  386 (457)
                      ..+.+.|++ .|.+..+-.+.              ...++++.|.+... +.+   .+++.|+  .++++-|...+....
T Consensus       267 ~~vA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~  345 (391)
T d1cl1a_         267 LKVAEWLAE-HPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMAYSWGGYESLILA  345 (391)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCBCCSCCCSSSCEEEE
T ss_pred             HHHHHHHHh-cccccccccccccchhhHHHHhhccCCCCcceeeeecCCCCHHHHHHHHHcCCcceEeeCCCCCccceeC
Confidence            999999999 78875442221              12356677777643 223   3445553  444455544322111


Q ss_pred             ChhHHHHHcCCCc--cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          387 EPSYVLRALGVDE--DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       387 ~~~~~l~~~g~~~--~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      .............  ....+.||++++.    ||+|.+++.|+++++++
T Consensus       346 ~~~~~~~~~~~~~~~gi~~~liRlSVGl----Ed~eDLi~Dl~~AL~~i  390 (391)
T d1cl1a_         346 NQPEHIAAIRPQGEIDFSGTLIRLHIGL----EDVDDLIADLDAGFARI  390 (391)
T ss_dssp             ECHHHHHHTSTTCCCCCCSCEEEEECCS----SCHHHHHHHHHHHHHHT
T ss_pred             CcccccccCCchHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHHhh
Confidence            0011111111111  1234789999997    88999999999998764

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=4.8e-23  Score=196.67  Aligned_cols=321  Identities=19%  Similarity=0.194  Sum_probs=203.8

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      |.|-.+..+.++|++++||.+...   |+     ..||  ..+.+.++|+.+++++|.+  ++++++|||+|+.++++++
T Consensus         2 ~~~~~~~~t~p~p~v~~A~~~a~~---g~-----~~yg--~~p~~~~le~~lA~~~G~~--~~~~~~sGt~A~~~al~a~   69 (343)
T d1m6sa_           2 IDLRSDTVTKPTEEMRKAMAQAEV---GD-----DVYG--EDPTINELERLAAETFGKE--AALFVPSGTMGNQVSIMAH   69 (343)
T ss_dssp             EECSCGGGCCCCHHHHHHHHTCCC---CC-----GGGT--CCHHHHHHHHHHHHHTTCS--EEEEESCHHHHHHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHHhhhc---CC-----cccC--CCHHHHHHHHHHHHHHCCC--eEEEeCCHHHHHHHHHHHH
Confidence            344344545668999999976421   11     1222  2367889999999999976  4999999999999999998


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCC------ce-EEEEecccccccc
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPD------TG-LISVMAVNNEIGV  211 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~------t~-li~i~~~~~~~G~  211 (457)
                      .    .+++.+++....|.+...........+..+..++.+ .+..|++.+++.+...      +. +++...++++.|.
T Consensus        70 ~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  144 (343)
T d1m6sa_          70 T----QRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR  144 (343)
T ss_dssp             C----CTTCEEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred             h----ccCCceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccccccCCce
Confidence            8    899999999998877766555554445566555544 4567999999998753      33 4445556566677


Q ss_pred             ccC---hHHHHHHHHhcCCcEEEehhhhcCCCcccCC-----CCcccEEEecccc-ccCCCCceEEEEecCCCccccccc
Q 040741          212 IQP---MEEIGQICKEFKIPFHTDAAQALGKIPVDVE-----KWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       212 ~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~-----~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      +.|   +++|.++|+++++++++|++++.+.......     ....+..+++.+| .+|.. .|++...++.........
T Consensus       145 ~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~  223 (343)
T d1m6sa_         145 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFIERARKAR  223 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHHhhhHhhC
Confidence            666   5678888899999999999987543221111     1123455666556 44444 466666654333222211


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEcc--
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAY--  360 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--  360 (457)
                      .       ...++.+.....+.. ..... .......+...++..++.+.+.+ +.+.....+.   ..+++.+.++.  
T Consensus       224 ~-------~~~~~~~~~~~~~a~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~v~~~~~~~~  290 (343)
T d1m6sa_         224 K-------MLGGGMRQAGVLAAA-GIIAL-TKMVDRLKEDHENARFLALKLKE-IGYSVNPEDV---KTNMVILRTDNLK  290 (343)
T ss_dssp             H-------HHTCCCSSTHHHHHH-HHHHH-HHSSTTHHHHHHHHHHHHHHHHH-HTCBCCGGGC---CSSEEEEECTTSS
T ss_pred             c-------ccccccchhHHHHHh-hhhhh-hhhHHHHHHHHHHHHHhhhHHHH-hccCccCCCC---CceEEEEEeCCCc
Confidence            1       111122222222221 11111 22233344555666666666666 4444433322   13455555543  


Q ss_pred             ccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          361 VEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       361 ~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ....++...|  +||.+.+..                       .+.+||+++..+|+||||+++++|+++++++
T Consensus       291 ~~a~~l~~~L~~~Gi~v~~~~-----------------------~~~iRi~~~~~~t~edid~~v~~l~~v~~~~  342 (343)
T d1m6sa_         291 VNAHGFIEALRNSGVLANAVS-----------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRKF  342 (343)
T ss_dssp             SCHHHHHHHHHHHTEECEEEE-----------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCEEecCC-----------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3456777777  688776432                       2689999999999999999999999999886

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.5e-22  Score=193.87  Aligned_cols=307  Identities=15%  Similarity=0.107  Sum_probs=215.9

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHH-HHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRH-LQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~-~~~~G~  171 (457)
                      +.|++...+....++++++++-|.+.  ++.++||..|+. ++.+++    ++|++|++....|.+....++. +...|.
T Consensus        41 ~~Y~R~~nPt~~~le~~la~LE~~~~--a~~fsSGMaAis-all~ll----~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi  113 (380)
T d1ibja_          41 YDYTRSGNPTRDALESLLAKLDKADR--AFCFTSGMAALS-AVTHLI----KNGEEIVAGDDVYGGSDRLLSQVVPRSGV  113 (380)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHH-HHHTTS----CTTCEEEEESSCCHHHHHHHHHTSGGGTC
T ss_pred             ceeeCCCChHHHHHHHHHHHHcCCce--EEehhhHHHHHH-HHHHhh----CCCCEEEEEecccccccchhhhhhccccc
Confidence            34555556889999999999999764  788888998986 566677    8999999999999999887765 356799


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++.+++..     |+++++++++++|++|+++.+.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-++|+|+
T Consensus       114 ~~~~~d~~-----~~~~~~~ai~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP~~-~~Pl~~GaDi  187 (380)
T d1ibja_         114 VVKRVNTT-----KLDEVAAAIGPQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVL-SRPLELGADI  187 (380)
T ss_dssp             EEEEECTT-----SHHHHHHHCCSSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTT-CCGGGTTCSE
T ss_pred             cccccCcc-----hHHHHHHHhccCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccccc-ccccccCCCE
Confidence            99998866     89999999999999999999999999999999999999999999999999875543 2233458999


Q ss_pred             EEeccccccCCCC---ceEEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHD  327 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~  327 (457)
                      ++-|.+|+++.-+   .|+++++++. ..++......       ..+++++..+..+...+    +.+.-++++..+++.
T Consensus       188 VvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~-------~G~~l~p~~a~ll~rgl----~Tl~lRm~~~~~nA~  256 (380)
T d1ibja_         188 VMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNS-------EGSGLAPFDCWLCLRGI----KTMALRIEKQQENAR  256 (380)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHH-------TTCBCCHHHHHHHHHHH----TTHHHHHHHHHHHHH
T ss_pred             EEecccceeccccCccccccccchhhHHHHHHhhccc-------cCCcCCHHHHHHHHhcc----hhhhhhHHHHHHHHH
Confidence            9999999665332   6777777542 2223222221       12245555544333322    357888899999999


Q ss_pred             HHHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEcccc-chHHHhccc--CeEecccCc----cCCCCC
Q 040741          328 RLLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYVE-GESLLMGLK--EVAVSSGSA----CTSASL  386 (457)
Q Consensus       328 ~l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~~-~~~~~~~l~--~i~~~~g~~----~~~~~~  386 (457)
                      ++.+.|++ .|.+. |+-+  +.           ...++++.+.+.+.+ ...+++.|+  .+++.-|..    |.+...
T Consensus       257 ~lA~~L~~-hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~~~~~~a~~f~d~l~l~~~a~SlG~~~SLi~~p~~~  335 (380)
T d1ibja_         257 KIAMYLSS-HPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSVALSKHLVETTKYFSIAVSFGSVKSLISMPCFM  335 (380)
T ss_dssp             HHHHHHHT-CTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCHHHHHHHHHHCSSSEECSCCCSSSCEEECTTTT
T ss_pred             HHHHHHHh-CCCeeEEeccccccCccccccccccccccccccccccHHHHHHHHHHhCCcCeEeeccCCccccccCchhh
Confidence            99999998 77753 2221  11           123455555443321 234555554  444455543    223222


Q ss_pred             ChhH----HHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          387 EPSY----VLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       387 ~~~~----~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .+..    ..+..|+.    .+.|||+++.    ||+|.+++.|+++++.
T Consensus       336 th~~~~~e~r~~~Gi~----~~lvRlSvGl----E~~eDLi~Dl~qAl~~  377 (380)
T d1ibja_         336 SHASIPAEVREARGLT----EDLVRISAGI----EDVDDLISDLDIAFKT  377 (380)
T ss_dssp             TTCSCCSSSSSSSSCC----TTCEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred             hhhcCCHHHHHHcCCC----cCeEEEEecc----CCHHHHHHHHHHHHHh
Confidence            2110    11223444    3899999997    7888899999998874

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.89  E-value=8e-22  Score=189.46  Aligned_cols=309  Identities=14%  Similarity=0.109  Sum_probs=223.1

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G  170 (457)
                      .+.|++...+....++++++++-|.+.  ++.++||..|+..++.+++    ++|++|++....|......++.. ...|
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg~~--a~~~sSGMaAi~~~l~~l~----~~Gd~iv~~~~~Yg~t~~l~~~~~~~~g  131 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGAES--TLLMASGMCASTVMLLALV----PAGGHIVTTTDCYRKTRIFIETILPKMG  131 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHHS----CSSCEEEEETTSCHHHHHHHHHTGGGGT
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCce--EEEecCcchHHHHHHhhcc----cccccccccccccchhhhhhcccccccc
Confidence            456777777899999999999999865  8999999999999999998    89999999999998888776644 5679


Q ss_pred             cEEEEEeCCCCCCCCHHH-HHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDE-LRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~-le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      .++.+++..     |.++ .++.++++|++|+++.+.||+..+.|+++|+++||++|+++++|.+.+.+.. ...-++|+
T Consensus       132 i~~~~~~~~-----~~~~~~~~~~~~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVDnT~atP~~-~~Pl~~Ga  205 (398)
T d1qgna_         132 ITATVIDPA-----DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLN-QKALALGA  205 (398)
T ss_dssp             CEEEEECSS-----CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTT-CCTTTTTC
T ss_pred             ccccccccc-----chhhhhhhhccccceEEEccCccccccccchHHHHHHHHhhcCCEEEecceeecccc-CCchhhCC
Confidence            999988754     4444 4456688999999999999999999999999999999999999999875433 23345689


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++-|.+|++|.-+   .|++..+++...++......       ..+..++....-+...    .+.+.-++++..+++
T Consensus       206 DiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~-------~G~~l~p~~a~ll~rg----l~TL~lRm~~~~~nA  274 (398)
T d1qgna_         206 DLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHI-------LGGALNPNAAYLIIRG----MKTLHLRVQQQNSTA  274 (398)
T ss_dssp             SEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHH-------HCCCCCHHHHHHHHHH----GGGHHHHHHHHHHHH
T ss_pred             CEEEEechhhcCcccceeehhhcchhhhhhhhhhhccc-------CCCcCCHHHHHHHHhc----chHHHHHHHHHHHHH
Confidence            999999999665432   57776665544444332221       1224554444433222    235788889999999


Q ss_pred             HHHHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCccCCCCC--
Q 040741          327 DRLLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSACTSASL--  386 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~~~~~~--  386 (457)
                      ..+.+.|++ .|.+. |+-+  +.           ...++++.|.+.+-  ....+++.|+  .++++-|...+....  
T Consensus       275 ~~lA~~L~~-hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~~~a~~f~~~L~l~~~a~SlGg~~SLi~~p~  353 (398)
T d1qgna_         275 LRMAEILEA-HPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDLLTTAKFVDALKIPYIAPSFGGCESIVDQPA  353 (398)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCSSSCEEECHH
T ss_pred             HHHHHHHHh-CCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCHHHHHHHHHcCCcceeeeCCCCCcceeeCcc
Confidence            999999999 88875 3322  11           12366666666532  1235666664  445555654432111  


Q ss_pred             ------ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          387 ------EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       387 ------~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                            .+.-.....|+++    +.|||+++.    ||+|.+++.|+++++.
T Consensus       354 ~~th~~~~~~~~~~~Gi~~----~liRlSvGl----Ed~eDLi~Dl~~AL~~  397 (398)
T d1qgna_         354 IMSYWDLSQSDRAKYGIMD----NLVRFSFGV----EDFDDLKADILQALDS  397 (398)
T ss_dssp             HHHSTTSCHHHHHTTTCCS----SEEEEECCS----SCHHHHHHHHHHHHHH
T ss_pred             hhccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHhc
Confidence                  1222345566665    899999997    8888899999998875

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.89  E-value=1.4e-21  Score=189.65  Aligned_cols=338  Identities=14%  Similarity=0.119  Sum_probs=228.3

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCC
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKR  147 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~  147 (457)
                      .++++-++++.+.+++.+       +..|    +.++++|+++++++|.+.  +++++|||.|+.++++++.... ++++
T Consensus         9 ~~~~~~~~~v~~~l~~~~-------~~~G----~~v~~fE~~~~~~~g~k~--ai~~~Sgt~Al~~al~al~~~~-~~~~   74 (371)
T d2fnua1           9 CLDKEDKKAVLEVLNSKQ-------LTQG----KRSLLFEEALCEFLGVKH--ALVFNSATSALLTLYRNFSEFS-ADRN   74 (371)
T ss_dssp             CCCHHHHHHHHHHHTSSC-------CSSS----HHHHHHHHHHHHHHTCSE--EEEESCHHHHHHHHHHHSSCCC-TTSC
T ss_pred             CCCHHHHHHHHHHHcCCC-------ccCC----HHHHHHHHHHHHHHCcCe--EEEEecHHHHHHHHHHHhcccC-CCCC
Confidence            466788899999886421       1112    578999999999999875  9999999999999999976410 2245


Q ss_pred             EEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCC
Q 040741          148 HVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKI  227 (457)
Q Consensus       148 ~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v  227 (457)
                      +||++..+++++..++...   |+++++++++.++.++.++++++++++|+.|++.|.   .|...++++|.++|+++++
T Consensus        75 eVi~p~~t~~a~~~ai~~~---G~~pv~vDi~~~~~~~~~~~~~~~~~~t~avi~vh~---~G~~~~~~~i~~~~~~~~i  148 (371)
T d2fnua1          75 EIITTPISFVATANMLLES---GYTPVFAGIKNDGNIDELALEKLINERTKAIVSVDY---AGKSVEVESVQKLCKKHSL  148 (371)
T ss_dssp             EEEECSSSCTHHHHHHHHT---TCEEEECCBCTTSSBCGGGSGGGCCTTEEEEEEECG---GGCCCCHHHHHHHHHHHTC
T ss_pred             eeecccccccccceeeecc---Ccccccccccccccccchhhhhhccchhhccccccc---cccccccccccccccccch
Confidence            8999999999999998887   999999999988888889999999999999998876   7999999999999999999


Q ss_pred             cEEEehhhhcCCCcccC---CCCcccEEEeccccccCCCCceEEEEecC-CCccccccccCCccccc------cccC-CC
Q 040741          228 PFHTDAAQALGKIPVDV---EKWNVSLMSLSGHKIYGPKGVGALYMRRR-PRIRVEPLINGGGQERG------IRSG-TL  296 (457)
Q Consensus       228 ~li~D~a~~~g~~~~~~---~~~~~Di~~~s~~K~~g~~G~G~l~~~~~-~~~~~~~~~~~~~~~~~------~~~~-t~  296 (457)
                      ++|.|+||++|+..-+-   ....+.++++...|.+...+.|+++.+++ ..++++.....+.....      ...| ..
T Consensus       149 ~lIEDaaqa~Ga~~~~~~~G~~g~~~~~Sf~~~K~l~~g~GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~G~n~  228 (371)
T d2fnua1         149 SFLSDSSHALGSEYQNKKVGGFALASVFSFHAIKPITTAEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNF  228 (371)
T ss_dssp             EEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBC
T ss_pred             hhccchhhccCceeccccCCccccccccccccccccccccceEEEeechhhhhhcccccccccccccccccccccccccc
Confidence            99999999998763321   11124455555679554444588887764 33334333322211000      0001 11


Q ss_pred             ChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCC--CcccceEEEEEccc---cchHHHhcc
Q 040741          297 PTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSME--RRYIGNLNLSFAYV---EGESLLMGL  370 (457)
Q Consensus       297 ~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~~~l  370 (457)
                      -+..+.|   |+...+ +.++...++.+++++++.+.|.+ .+++.+..+..  ........+.+...   ....+...|
T Consensus       229 r~sel~A---aigl~qL~~l~~~~~~R~~~~~~y~~~l~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~~L  304 (371)
T d2fnua1         229 RLNEIQS---ALGLSQLKKAPFLMQKREEAALTYDRIFKD-NPYFTPLHPLLKDKSSNHLYPILMHQKFFTCKKLILESL  304 (371)
T ss_dssp             CCCHHHH---HHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-CSSEEESGGGCSSCCCCSCEEEEECGGGGGGHHHHHHHH
T ss_pred             cccchhh---hhhhhhhhhccchhhhhhhhhhhhcccccc-cccccccccccccccccccccccccccchhHHHHHHHHH
Confidence            1112221   221111 34778888888899999999998 88888764322  22223333334321   224566666


Q ss_pred             --cCeEecccCccCCCCCChhHHHHHcCC-----CccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          371 --KEVAVSSGSACTSASLEPSYVLRALGV-----DEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       371 --~~i~~~~g~~~~~~~~~~~~~l~~~g~-----~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                        +||.+....  .+....|.+. ..+..     .+....+.|.+.+....+.+|++++++.+.++++.
T Consensus       305 ~~~gI~~~~~y--~pl~~~~~~~-~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~~  370 (371)
T d2fnua1         305 HKRGILAQVHY--KPIYQYQLYQ-QLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFES  370 (371)
T ss_dssp             HHTTEECBCCC--CCGGGSHHHH-HHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCCcceeC--cccccCHHHH-hccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHHc
Confidence              677765443  2222222221 11111     12234578999988889999999999999999875

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.89  E-value=7.1e-21  Score=183.20  Aligned_cols=313  Identities=16%  Similarity=0.166  Sum_probs=227.6

Q ss_pred             ccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcC
Q 040741           92 THLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEG  170 (457)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G  170 (457)
                      .+.|++...+....+++.++++-|.+.  .+..+||..|+..++.++.    ++|++|+++...|.+....+. .+.+.|
T Consensus        50 ~~~YsR~~nPT~~~le~~la~LEg~~~--a~~~sSGmaAi~~~~l~l~----~~gd~vv~~~~~yg~t~~~~~~~~~~~g  123 (394)
T d1e5ea_          50 GYIYTRLGNPTVSNLEGKIAFLEKTEA--CVATSSGMGAIAATVLTIL----KAGDHLISDECLYGCTHALFEHALTKFG  123 (394)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTT
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCcc--eeeeccchHHHHHHHHhhc----ccccccccccceeehhhHhHHHHhhccc
Confidence            355666667899999999999999765  8888899999999999998    899999999999988876655 557789


Q ss_pred             cEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHh-cCCcEEEehhhhcCCCcccCCCCcc
Q 040741          171 FEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKE-FKIPFHTDAAQALGKIPVDVEKWNV  249 (457)
Q Consensus       171 ~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~-~~v~li~D~a~~~g~~~~~~~~~~~  249 (457)
                      +++.+++..     |+++++++++++|++|+++.+.||+..+.+++++.+++++ +|+++++|.+.+-+.. .+.-++|+
T Consensus       124 i~~~~~d~~-----d~~~~~~~i~~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvDnT~atP~~-~~Pl~~Ga  197 (394)
T d1e5ea_         124 IQVDFINTA-----IPGEVKKHMKPNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMI-TNPVDFGV  197 (394)
T ss_dssp             CEEEEECTT-----STTHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTT-CCGGGGTC
T ss_pred             eeeeccCCC-----CHHHHHHhhcccccEEEEeccCCcceeeehhhhhhhccccccCeEEEecCcccCccc-CCchhcCC
Confidence            999999876     7889999999999999999999999999999999887665 6899999999875543 33345689


Q ss_pred             cEEEeccccccCCCC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040741          250 SLMSLSGHKIYGPKG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALH  326 (457)
Q Consensus       250 Di~~~s~~K~~g~~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~  326 (457)
                      |+++-|.+|+++.-+   .|+++++++...+.+....     +....+++++..+.-+...+    +.+.-++++..+++
T Consensus       198 DiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~-----~~~~G~~lsp~~a~ll~rgl----~TL~lRm~r~~~nA  268 (394)
T d1e5ea_         198 DVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI-----KDITGSVISPHDAWLITRGL----STLNIRMKAESENA  268 (394)
T ss_dssp             SEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHH----TTHHHHHHHHHHHH
T ss_pred             CEEEechhhhcCCCcccccccccchhhHHHHHHHHHH-----HHhhCCCCChHHHHHHHhhc----hhHHHHHHHHHHHH
Confidence            999999999665433   6888877654433221110     00112345555444333222    35788889999999


Q ss_pred             HHHHHHHhhcCCCeE-EeCC--CC-----------CcccceEEEEEccc--cchHHHhccc--CeEecccCcc----CCC
Q 040741          327 DRLLNGIKEKLDGVV-VNGS--ME-----------RRYIGNLNLSFAYV--EGESLLMGLK--EVAVSSGSAC----TSA  384 (457)
Q Consensus       327 ~~l~~~l~~~~~~~~-~~~~--~~-----------~~~~~~~~~~~~~~--~~~~~~~~l~--~i~~~~g~~~----~~~  384 (457)
                      ..+.+.|++ .|.+. |+-+  +.           ...++++.|.+.+-  ....+++.|+  .++++-|..-    .+.
T Consensus       269 ~~lA~~L~~-hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~~~sf~~~~~~~~a~~f~~~l~l~~~a~SlGg~eSLi~~p~  347 (394)
T d1e5ea_         269 MKVAEYLKS-HPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKSGFEGAKKLLDNLKLITLAVSLGGCESLIQHPA  347 (394)
T ss_dssp             HHHHHHHHT-CTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETTHHHHHHHHHHTCSSSEESSCCCSSSCEEECGG
T ss_pred             HHHHHHHhh-cCCccEEeCCCcccccchhhhhcccccCCCeeeeeccCCHHHHHHHHHhCCccceeeccCCccceeECcc
Confidence            999999999 88874 3322  11           12366666665432  1245666664  4444445432    222


Q ss_pred             CC----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          385 SL----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       385 ~~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      .+    -+.-..+..|+++    +.|||+++.    ||+|.+++.|+++++.+.
T Consensus       348 ~~th~~~~~~~r~~~Gi~~----~liRlSVGl----Ed~eDLi~Dl~qAl~~l~  393 (394)
T d1e5ea_         348 SMTHAVVPKEEREAAGITD----GMIRLSVGI----EDADELIADFKQGLDALL  393 (394)
T ss_dssp             GTTTTTSCHHHHHHTTCCT----TEEEEECCS----SCHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHHhh
Confidence            22    2334566778876    899999997    888889999999998764

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=8.2e-22  Score=187.45  Aligned_cols=337  Identities=17%  Similarity=0.214  Sum_probs=236.0

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccC--CCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhh
Q 040741           64 QATTPVDPRVLDAMLPFYLSRYG--NPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~  140 (457)
                      ++.+.+++.|++++...+.+.|.  .|+.+ +..|-...+.++. +.++..++||++..++.. .||+.|+..++.+++ 
T Consensus        33 aSEN~~S~~v~~a~~S~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~a~~anVqp-~SGs~AN~av~~All-  109 (416)
T d1dfoa_          33 ASENYTSPRVMQAQGSQLTNKYAEGYPGKR-YYGGCEYVDIVEQLAIDRAKELFGADYANVQP-HSGSQANFAVYTALL-  109 (416)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEEECCC-SSHHHHHHHHHHHHC-
T ss_pred             cCcccCCHHHHHHhcCcccCcccCCCCCCc-ccCCChhHHHHHHHHHHHHHHHhCCCcceeec-ccCccHHHHHHHHhc-
Confidence            45668899999999999988764  56543 3334444455555 567888899997654544 568899999999999 


Q ss_pred             hhcCCCCEEEEcCCCCcchHHHHHHH--HhcCcEEEEEeCCCCCCCCHHHHHHhcC-CCceEEEEeccccccccccChHH
Q 040741          141 FYKDKKRHVITTQTEHKCVLDSCRHL--QQEGFEITYLPVGADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPMEE  217 (457)
Q Consensus       141 ~~~~~g~~vi~~~~~h~~~~~~~~~~--~~~G~~v~~v~~~~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l~~  217 (457)
                         +|||.|+..+..|.+........  ....++....+++.++.+|.+++++.++ .++++|++...  .+....|+++
T Consensus       110 ---~pGD~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~~kPklIi~G~S--~y~r~~d~~~  184 (416)
T d1dfoa_         110 ---EPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFS--AYSGVVDWAK  184 (416)
T ss_dssp             ---CTTCEEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHHHCCSEEEEECS--SCCSCCCHHH
T ss_pred             ---CCCCeeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHHhccceEEeccc--ccccccCHHH
Confidence               99999999988877765432211  1124677888888888999999998764 58899988653  3567889999


Q ss_pred             HHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEecC---CCccccccccCCccc
Q 040741          218 IGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRR---PRIRVEPLINGGGQE  288 (457)
Q Consensus       218 i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~---~~~~~~~~~~~~~~~  288 (457)
                      ++++|++.|.++++|.+|-.|     ..+-.+ . .+|++++|.|| +.||.| |+++.++.   ..+++.....-+   
T Consensus       185 ~reiad~vga~l~~D~aH~~GLIa~g~~~sP~-~-~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~~~i~~avfPg---  258 (416)
T d1dfoa_         185 MREIADSIGAYLFVDMAHVAGLVAAGVYPNPV-P-HAHVVTTTTHKTLAGPRG-GLILAKGGSEELYKKLNSAVFPG---  258 (416)
T ss_dssp             HHHHHHHTTCEEEEECTTTHHHHHHTSSCCCT-T-TSSEEEEESSSTTCCCSC-EEEEESSCCHHHHHHHHHHHTTT---
T ss_pred             HHHHHHhcCceEEcchhhhhcceeccccCCcc-c-ccceeeeehhhcccCCCc-eEEEeccchHhHHHHHHhhhCcc---
Confidence            999999999999999999643     333333 3 36999999999 788986 88888743   222332222111   


Q ss_pred             cccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchH
Q 040741          289 RGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGES  365 (457)
Q Consensus       289 ~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  365 (457)
                         ..|.+-...+++...+++.+.. ++....+++.++++.|.+.|.+  .|+.++.....  ...+.+.+.  +.++..
T Consensus       259 ---~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~L~~--~G~~iv~ggTd--nHlvlvdl~~~~~~G~~  331 (416)
T d1dfoa_         259 ---GQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFLE--RGYKVVSGGTD--NHLFLVDLVDKNLTGKE  331 (416)
T ss_dssp             ---TCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHH
T ss_pred             ---cccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh--CCcccccCCCC--CceeEEEecccCCCHHH
Confidence               1134556778888778877543 6789999999999999999999  58988753222  334445553  445666


Q ss_pred             HHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHHH
Q 040741          366 LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       366 ~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~~  434 (457)
                      ....|  .||.+.....  |...           ......+.|||+....    ..++|++++.+.|.++++...
T Consensus       332 a~~~Le~~gI~~Nkn~i--P~d~-----------~~~~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~~~  393 (416)
T d1dfoa_         332 ADAALGRANITVNKNSV--PNDP-----------KSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDSIN  393 (416)
T ss_dssp             HHHHHHHTTEECEECCC--TTCS-----------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHcCeEEeCCcC--CCCC-----------CCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence            66666  3666542211  1000           1123347899996554    468999999999999886543

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=1.6e-20  Score=181.46  Aligned_cols=315  Identities=15%  Similarity=0.133  Sum_probs=220.6

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~  171 (457)
                      +.|++...+....+++.|+++-|.+.  ++.++||..|+..++.+++    ++|++||+....|.+....++ .+.+.|+
T Consensus        50 ~~YsR~~nPT~~~LE~~la~LE~~~~--a~~~~SGmaAi~~~~~~l~----~~gd~il~~~~~Yg~t~~l~~~~~~~~gi  123 (421)
T d2ctza1          50 NIYSRIMNPTVDVLEKRLAALEGGKA--ALATASGHAAQFLALTTLA----QAGDNIVSTPNLYGGTFNQFKVTLKRLGI  123 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEECSCCCHHHHHHHHTHHHHTTC
T ss_pred             ceecCCCCHHHHHHHHHHHHHhCCCe--EEEecChHHHHHHHHHhhc----ccccceeecCCcCCchhHHHHHHHhhccc
Confidence            45666666899999999999999765  8899999999999999999    899999999999999888777 4467899


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccE
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSL  251 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di  251 (457)
                      ++.+++..    -+.+..+++++++|++|+++.+.||+..+.|+++|+++||++|+++++|.+.+.+-.....-++|+|+
T Consensus       124 ~~~~~d~~----~~~~~~~~~~~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~~GaDi  199 (421)
T d2ctza1         124 EVRFTSRE----ERPEEFLALTDEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLAWGAAL  199 (421)
T ss_dssp             EEEECCTT----CCHHHHHHHCCTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGGGTCSE
T ss_pred             cceecccc----cCcchhccccCCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccccCCcE
Confidence            99998754    13566778899999999999999999999999999999999999999999987432223334568999


Q ss_pred             EEeccccccCCCC---ceEEEEecCCCcc-cc--------ccccCCccc----------------cccccCCCChhHHHH
Q 040741          252 MSLSGHKIYGPKG---VGALYMRRRPRIR-VE--------PLINGGGQE----------------RGIRSGTLPTPLIVG  303 (457)
Q Consensus       252 ~~~s~~K~~g~~G---~G~l~~~~~~~~~-~~--------~~~~~~~~~----------------~~~~~~t~~~~~~~a  303 (457)
                      ++-|.+|++|.-+   .|+++.+++.... .+        +...+....                .+...+.+++..+.-
T Consensus       200 VvhS~TKyl~GHsD~l~G~vv~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~sP~~a~l  279 (421)
T d2ctza1         200 VTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWV  279 (421)
T ss_dssp             EEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred             EEEechhhccCCCCeEEEEEEcCCcchhhhcccccccCCchhhhhhHHHHHhccHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence            9999999665433   6777777653221 11        000000000                000123444444332


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe-EEeCCC--C------------CcccceEEEEEccc--cchHH
Q 040741          304 FGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV-VVNGSM--E------------RRYIGNLNLSFAYV--EGESL  366 (457)
Q Consensus       304 l~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~--~------------~~~~~~~~~~~~~~--~~~~~  366 (457)
                      +...    .+.+.-++++..+++..+.+.|++ .|.+ +|+-+.  .            ...++++.|.+.+-  ....+
T Consensus       280 ~~rg----l~TL~lRm~~~~~nA~~vA~~L~~-hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~~~~~a~~f  354 (421)
T d2ctza1         280 VLLG----METLSLRAERHVENTLHLAHWLLE-QPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGGYEAAKRF  354 (421)
T ss_dssp             HHHH----HTTHHHHHHHHHHHHHHHHHHHHT-CTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTHHHHHHHH
T ss_pred             HhcC----CcchhhHHHHHHHHHHHHHhhhcc-CCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecCCHHHHHHH
Confidence            2222    235788889999999999999999 8887 443321  1            12355767776532  12356


Q ss_pred             Hhccc--CeEecccCc----cCCCCC----ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHH
Q 040741          367 LMGLK--EVAVSSGSA----CTSASL----EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQV  430 (457)
Q Consensus       367 ~~~l~--~i~~~~g~~----~~~~~~----~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~  430 (457)
                      +..|+  .++++-|..    |.+...    -+.-.....|+++    +.||++++.    ||+|.+++.|++++
T Consensus       355 ~~~L~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~~GI~~----~liRlSvGl----Ed~eDLi~DL~qAL  420 (421)
T d2ctza1         355 ISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSP----EMVRLSVGL----EHVEDLKAELKEAL  420 (421)
T ss_dssp             HHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCT----TEEEEECCS----SCHHHHHHHHHHHT
T ss_pred             HHcCCcCeeccccccccceeeCcccccchhCCHHHHHhcCCCc----CeEEEEecc----CCHHHHHHHHHHhc
Confidence            66664  445555544    222222    1223456678776    899999997    78888888888765

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.88  E-value=1.2e-21  Score=185.21  Aligned_cols=319  Identities=16%  Similarity=0.191  Sum_probs=192.6

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHh
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGV  138 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~  138 (457)
                      .+|.+..+..++|+|++||.+.....         ..+|...+..+++|+++++++|+++++++||+|||+|+++++..+
T Consensus         2 ~~f~nd~~~g~~P~v~eAl~~~~~~~---------~~~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~   72 (340)
T d1svva_           2 YSFVNDYSVGMHPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA   72 (340)
T ss_dssp             EECSCSCSSCCCHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCCHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHH
Confidence            35555555667899999999875431         112333467789999999999999889999999999999999988


Q ss_pred             hhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcC------CCceEEEEeccccccccc
Q 040741          139 MHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIR------PDTGLISVMAVNNEIGVI  212 (457)
Q Consensus       139 ~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~------~~t~li~i~~~~~~~G~~  212 (457)
                      .    .+++.+++....|.+.......... +........... ..+.+...++..      ..+..++++...+..|.+
T Consensus        73 ~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (340)
T d1svva_          73 L----RPWEAVIATQLGHISTHETGAIEAT-GHKVVTAPCPDG-KLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQ  146 (340)
T ss_dssp             C----CTTEEEEEETTSHHHHSSTTHHHHT-TCCEEEECCTTS-CCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCC
T ss_pred             h----hhccccccccccceeeeeccccccc-ceeeeecccccc-cccchhHHHHhhhhhcccCCcceeeeeccccccccc
Confidence            8    8999999988888777655444433 333333332322 223333322221      123444444444556666


Q ss_pred             cC---hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCC-------cccEEEeccccccCCCCceEEEEecCCCccccccc
Q 040741          213 QP---MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKW-------NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLI  282 (457)
Q Consensus       213 ~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~-------~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~  282 (457)
                      .+   +..+.++|+++++++++|+++..+.........       ..++...+..|..+..+.++............+..
T Consensus       147 ~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (340)
T d1svva_         147 YTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLI  226 (340)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHH
T ss_pred             ccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhc
Confidence            54   566788999999999999999765443332221       23456666666444443344443322222222111


Q ss_pred             cCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEccc
Q 040741          283 NGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFAYV  361 (457)
Q Consensus       283 ~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  361 (457)
                      .       ...++.+....+++ +++..... ......++...+++++...++.  +++.+..+..   .+++.+.++..
T Consensus       227 ~-------~~~~~~~~~~~~~a-a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~p~~---~~~v~~~~~~~  293 (340)
T d1svva_         227 K-------QRGALMAKGWLLGI-QFEVLMKDNLFFELGAHSNKMAAILKAGLEA--CGIRLAWPSA---SNQLFPILENT  293 (340)
T ss_dssp             H-------HTTCCCTTTHHHHH-HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHH--TTCCBSSCCS---SSEECBEEEHH
T ss_pred             c-------cccCccchhhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhHHHHhc--CCCeeecCCC---ceEEEEeCCHH
Confidence            1       11223332222222 22222222 3566677788888999999998  6887765432   34444444432


Q ss_pred             cchHHHhccc--CeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHH
Q 040741          362 EGESLLMGLK--EVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVK  428 (457)
Q Consensus       362 ~~~~~~~~l~--~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~  428 (457)
                      ....+...+.  ++...                       ..+++.|||++++.+|+||||+++++|++
T Consensus       294 ~~~~l~~~~~~~~~~~~-----------------------~~~~~~vR~s~~~~~t~edid~~l~~l~~  339 (340)
T d1svva_         294 MIAELNNDFDMYTVEPL-----------------------KDGTCIMRLCTSWATEEKECHRFVEVLKR  339 (340)
T ss_dssp             HHHHHTTTEECEEEEEE-----------------------TTTEEEEEEECCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccc-----------------------CCCCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence            2233333331  22221                       12348999999999999999999999986

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.87  E-value=1.2e-21  Score=185.34  Aligned_cols=335  Identities=18%  Similarity=0.218  Sum_probs=234.2

Q ss_pred             CCCCCCCHHHHHHHHHHHhhccC--CCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhh
Q 040741           64 QATTPVDPRVLDAMLPFYLSRYG--NPHSRTHLFGWESEVAVET-ARSQIADLIGASPKEIIFTSGATESNNVSIKGVMH  140 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~  140 (457)
                      ++.+.+++.|++++...+.+.|.  .|+.+.| .|-...+.++. +.++..++||++..++... ||+.|+..++.++. 
T Consensus        30 aSEN~~S~~v~~a~~S~l~nkyaeG~pg~ryy-~G~~~id~iE~la~~ra~~lF~a~~anVqp~-SGs~An~av~~all-  106 (405)
T d1kl1a_          30 ASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY-GGCEYVDIVEELARERAKQLFGAEHANVQPH-SGAQANMAVYFTVL-  106 (405)
T ss_dssp             TTCCCCCHHHHHHHTSGGGGCCCCEETTEESS-SCCHHHHHHHHHHHHHHHHHHCCSEEECCCS-SHHHHHHHHHHHHC-
T ss_pred             ccCCcCCHHHHHHhcCcccCcCcCCCCCcccc-CCchhHHHHHHHHHHHHHHHhCCCcceeecc-CchHHHHHHHHHhc-
Confidence            45668899999999999987763  5665333 34444444444 6688889999976545444 48889999999999 


Q ss_pred             hhcCCCCEEEEcCCCCcchHHH---HHHHHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccccccccCh
Q 040741          141 FYKDKKRHVITTQTEHKCVLDS---CRHLQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNEIGVIQPM  215 (457)
Q Consensus       141 ~~~~~g~~vi~~~~~h~~~~~~---~~~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~~G~~~~l  215 (457)
                         +|||.|+..+..+.+....   .... ...++....+++ +++.+|.+++++.++ .++++|++....  +-...|+
T Consensus       107 ---~pGD~im~l~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~~~~ID~d~l~~~a~~~kPklIi~G~S~--y~r~~d~  180 (405)
T d1kl1a_         107 ---EHGDTVLGMNLSHGGHLTHGSPVNFS-GVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASA--YPRIIDF  180 (405)
T ss_dssp             ---CTTCEEEEECGGGTCCGGGTCTTSHH-HHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSS--CCSCCCH
T ss_pred             ---CCCCEEEEeecccccccccCcccccc-ceEEEEEEeccchhcccccHHHHHHHHHhhCcceEEecccc--cccccCh
Confidence               9999999877654443321   1111 125688888888 567899999999875 578888886554  3466789


Q ss_pred             HHHHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCccccccccCCcccc
Q 040741          216 EEIGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQER  289 (457)
Q Consensus       216 ~~i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~  289 (457)
                      +++.++|++.|.+++.|.+|-.|     ..+-.+ + .+|++++|.|| +.||.| |+++.+++..+++.....-+    
T Consensus       181 ~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~-~-~aDvvt~tThKtlrGPrg-g~I~~~~~~~~~i~~avfPg----  253 (405)
T d1kl1a_         181 AKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPV-P-YAHFVTTTTHKTLRGPRG-GMILCQEQFAKQIDKAIFPG----  253 (405)
T ss_dssp             HHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCST-T-TCSEEEEESSSTTCCCSC-EEEEECHHHHHHHHHHHTTT----
T ss_pred             HHHHHHHhhhCCEEecchhhHhhhhhhhhcCChh-h-hhhheeccccccccCCCC-ceEEecchhHHHHHhhhCcc----
Confidence            99999999999999999999643     333333 3 47999999999 788996 99998876555554333222    


Q ss_pred             ccccCCCChhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc--cccchHH
Q 040741          290 GIRSGTLPTPLIVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA--YVEGESL  366 (457)
Q Consensus       290 ~~~~~t~~~~~~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  366 (457)
                        ..|.+-...+++...++.... .++....+++.++++.|.+.|.+  .|+.++..-..  ...+.+.+.  +.++...
T Consensus       254 --~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~--~G~~vv~ggTd--~H~vlvdl~~~~~~g~~a  327 (405)
T d1kl1a_         254 --IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN--EGFTLVSGGTD--NHLLLVDLRPQQLTGKTA  327 (405)
T ss_dssp             --TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGSCS--SSEEEEECGGGTCCHHHH
T ss_pred             --cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--CCceeecCCCc--cceeeccccccCCcHHHH
Confidence              124566678888888887755 46889999999999999999999  68988853222  344555553  4455555


Q ss_pred             Hhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHHHHHHHHHHHHHHHHH
Q 040741          367 LMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       367 ~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~edid~~~~~l~~~~~~~  433 (457)
                      ...|  .||.+.......  ..           ......+.|||+....    ..++|+.++.+.|.++++..
T Consensus       328 e~~Le~agI~~Nkn~iP~--d~-----------~~~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~~  387 (405)
T d1kl1a_         328 EKVLDEVGITVNKNTIPY--DP-----------ESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNV  387 (405)
T ss_dssp             HHHHHHHTEECEECCCTT--CS-----------SCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHcCeEEcCCcCCC--CC-----------CCCCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhcC
Confidence            5556  366554221110  00           0123347899996543    46899999999999998643

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.87  E-value=5.4e-21  Score=180.34  Aligned_cols=298  Identities=15%  Similarity=0.161  Sum_probs=212.4

Q ss_pred             HHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCC
Q 040741          105 TARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGI  183 (457)
Q Consensus       105 ~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~  183 (457)
                      .+|++++++-|.+.  ++.++||..|+..++.+++    ++||+|+++..-|.+....++ .+++.|+++.+++..    
T Consensus         2 aLE~~la~Leg~~~--a~~~sSGMaAi~~~l~~ll----~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi~~~~~d~~----   71 (331)
T d1pffa_           2 ALEGKIAKLEHAEA--CAATASGMGAIAASVWTFL----KAGDHLISDDCLYGCTHALFEHQLRKFGVEVDFIDMA----   71 (331)
T ss_dssp             HHHHHHHHHHTCSE--EEEESSHHHHHHHHHHHHC----CTTCEEEEESCCCHHHHHHHHTHHHHTTCEEEEECTT----
T ss_pred             HHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHHh----CCCCEEEEeCCCchHHHHHHHHHHHhcCeEEEEeccc----
Confidence            47899999999764  8888999999999999998    899999999999988877766 457789999999876    


Q ss_pred             CCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHH-HhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccccCC
Q 040741          184 VNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQIC-KEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKIYGP  262 (457)
Q Consensus       184 ~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~-~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~~g~  262 (457)
                       |++.++++++++|++|+++.+.||+..+.+++++.+++ +++|+++++|.+.+.+.. .+.-++|+|+++-|.+|+++.
T Consensus        72 -d~~~~~~~i~~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-~~pl~~GaDiVv~S~TKy~~G  149 (331)
T d1pffa_          72 -VPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-TNPLDLGVDIVVHSATKYING  149 (331)
T ss_dssp             -STTHHHHTCCTTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH-CCGGGGTCSEEEEETTTTTSS
T ss_pred             -chhhHhhhcccccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc-ccccccCCCEEEecchhhcCC
Confidence             88999999999999999999999999999999999985 678999999999874422 223345799999999996653


Q ss_pred             CC---ceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC
Q 040741          263 KG---VGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDG  339 (457)
Q Consensus       263 ~G---~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  339 (457)
                      -+   .|+++++++...+......     +......+++..+..+...+    +.+.-++++..+++..+.+.|++ .|.
T Consensus       150 h~d~~~G~v~~~~~~~~~~~~~~~-----~~~~G~~l~p~~a~ll~rgl----~Tl~~Rm~~~~~nA~~lA~~L~~-hp~  219 (331)
T d1pffa_         150 HTDVVAGLVCSRADIIAKVKSQGI-----KDITGAIISPHDAWLITRGT----LTLDMRVKRAAENAQKVAEFLHE-HKA  219 (331)
T ss_dssp             SSSCCCEEEEECHHHHHHHHHTCC-----CCCCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-CTT
T ss_pred             CCccccccccccccchhhhhhhhh-----hhccCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhh-CCc
Confidence            32   5888877543322211100     00112245555444443333    34678888899999999999998 777


Q ss_pred             e-EEeCC--CC-----------CcccceEEEEEccc-cchHHHhccc--CeEecccCccCCCC--------CChhHHHHH
Q 040741          340 V-VVNGS--ME-----------RRYIGNLNLSFAYV-EGESLLMGLK--EVAVSSGSACTSAS--------LEPSYVLRA  394 (457)
Q Consensus       340 ~-~~~~~--~~-----------~~~~~~~~~~~~~~-~~~~~~~~l~--~i~~~~g~~~~~~~--------~~~~~~l~~  394 (457)
                      + +++-+  +.           ...++++.|.+.+. ....+++.|+  .++++-|...+...        .-+.-....
T Consensus       220 V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~~~~~~f~d~l~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~~  299 (331)
T d1pffa_         220 VKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGLEKAKKVLDNCHVVSLAVSLGGPESLIQHPASMTHAGVPKEEREA  299 (331)
T ss_dssp             CCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSHHHHHHHHHTCSSSEECSSCCSSSCEEECHHHHTSTTSCHHHHHH
T ss_pred             EEeeccccccCccHHHHHhhcccccCcccceeeccHHHHHHHHHhCCcceecccCCCCceeEeCccccccccCCHHHHHh
Confidence            6 33222  11           23466677776542 2345566664  44555565432111        112234566


Q ss_pred             cCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          395 LGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       395 ~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      .|+++    +.||++++.    ||.|.+++.|+++++.
T Consensus       300 ~Gi~~----~liRlsvGl----E~~~DLi~Dl~~AL~~  329 (331)
T d1pffa_         300 AGLTD----NLIRLSVGC----ENVQDIIDDLKQALDL  329 (331)
T ss_dssp             TTCCT----TEEEEECCS----SCHHHHHHHHHHHHHT
T ss_pred             cCCCc----CeEEEEeee----CCHHHHHHHHHHHHHH
Confidence            77776    899999997    7888888888888874

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=2.8e-19  Score=173.51  Aligned_cols=323  Identities=14%  Similarity=0.129  Sum_probs=214.6

Q ss_pred             CCCcEEecCCC------CCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQA------TTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~------~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|+|+.+      -+...|++.+++.+.+.+....+....       .+...++.+.+.+......+.+.|+++|+
T Consensus        34 ~dG~~ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~~-------~~~~~~la~~l~~~~~~~~~~v~f~~sGs  106 (387)
T d1vefa1          34 AEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTLP-------TPMRGEFYRTLTAILPPELNRVFPVNSGT  106 (387)
T ss_dssp             TTSCEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTSC-------CHHHHHHHHHHHHTSCTTEEEEEEESSHH
T ss_pred             CCCCEEEEcchhHHhhhhcCCcHHHHHHHHHHHHhhcccccccC-------CchHHHHHHHhhhhccccceeeccccCch
Confidence            34556888755      335789999999999987544332211       13444555556665554445699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEc-CCCCcchHHHHHHH----HhcC-----cEEEEEeCCCCCCCCHHHHHHhcCCCce
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITT-QTEHKCVLDSCRHL----QQEG-----FEITYLPVGADGIVNLDELRAAIRPDTG  198 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~-~~~h~~~~~~~~~~----~~~G-----~~v~~v~~~~~~~~d~~~le~~i~~~t~  198 (457)
                      +|++.|++....+. + +..|+.. ...|.....+....    ...+     ..+..+|.+     |+++|++.++++..
T Consensus       107 eA~e~Aik~Ar~~t-~-r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~~~~~iA  179 (387)
T d1vefa1         107 EANEAALKFARAHT-G-RKKFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYN-----DVEALKRAVDEETA  179 (387)
T ss_dssp             HHHHHHHHHHHHHH-S-CCEEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTT-----CHHHHHHHCCTTEE
T ss_pred             HHHHHHHHHHHhhc-c-cceecccccCCCCCccceEeccCCccccCCCCCCCCCceEeCCC-----CHHHHHHhcCCCeE
Confidence            99999999877653 3 4455554 44566665554322    0111     234555544     89999999999999


Q ss_pred             EEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCCcc--cCC--CCcccEEEecccc-ccCCCCceEE
Q 040741          199 LISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKIPV--DVE--KWNVSLMSLSGHK-IYGPKGVGAL  268 (457)
Q Consensus       199 li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~~~--~~~--~~~~Di~~~s~~K-~~g~~G~G~l  268 (457)
                      .|+++.+....|...+    +++|.++|++||+++|+|++++ +|....  ...  ...+|+++++  | +.|...++.+
T Consensus       180 avi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~g--K~l~gG~~~~~~  257 (387)
T d1vefa1         180 AVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLA--KALGGGVPLGVA  257 (387)
T ss_dssp             EEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEEC--GGGGTTSSCEEE
T ss_pred             EEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCCCcccccCCcCCceeeec--ccCCCCcccccc
Confidence            9999999988898876    9999999999999999999996 433321  111  2247999888  9 4433346888


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCC--CeEEeCCC
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLD--GVVVNGSM  346 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~  346 (457)
                      +++++......+...++.       .+.++..+++..+.++.+++  +...++.+++.+++++.|++ +.  .+.-+   
T Consensus       258 ~~~~~~~~~~~~~~~g~T-------~~gnPla~aaa~a~L~~l~~--~~~~~~v~~~g~~l~~~L~~-l~~~~v~~v---  324 (387)
T d1vefa1         258 VMREEVARSMPKGGHGTT-------FGGNPLAMAAGVAAIRYLER--TRLWERAAELGPWFMEKLRA-IPSPKIREV---  324 (387)
T ss_dssp             EEEHHHHHTSCTTSSCCS-------STTCHHHHHHHHHHHHHHHH--HTTHHHHHHHHHHHHHHHHT-SCCTTEEEE---
T ss_pred             ccceeeeeccccCCcccc-------CCCCcchhhhcccchhhccc--ccccchHhhhhHHHHHHHHh-cCCCceEEE---
Confidence            888765555444443321       14467777777788888876  55667788888888888887 42  22111   


Q ss_pred             CCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          347 ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                       ...+.+..+.+.......+...+  .++.+..                       ...+.|||.++..+|++|||++++
T Consensus       325 -rg~Gl~~~ie~~~~~~~~~~~~~~~~g~l~~~-----------------------~g~~~ir~~Ppl~it~~~ld~~~~  380 (387)
T d1vefa1         325 -RGMGLMVGLELKEKAAPYIARLEKEHRVLALQ-----------------------AGPTVIRFLPPLVIEKEDLERVVE  380 (387)
T ss_dssp             -EEETTEEEEEESSCSHHHHHHHHHHHCEECEE-----------------------SSTTEEEECCCTTCCHHHHHHHHH
T ss_pred             -eecceEEEEEEeCCchHHHHHHHHHCCCeEEe-----------------------cCCCEEEEECCccCCHHHHHHHHH
Confidence             12245555666543333333332  3444322                       112789999999999999999999


Q ss_pred             HHHHHH
Q 040741          425 LTVKQV  430 (457)
Q Consensus       425 ~l~~~~  430 (457)
                      ++++++
T Consensus       381 ~i~~aL  386 (387)
T d1vefa1         381 AVRAVL  386 (387)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999886

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.86  E-value=1.4e-22  Score=201.24  Aligned_cols=304  Identities=15%  Similarity=0.107  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC
Q 040741          100 EVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG  179 (457)
Q Consensus       100 ~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~  179 (457)
                      .+.+.++++.+++++|.+.  ++++++||+|+.+++++++    ++|++|+.....+ +....+   ...|+.++.+..+
T Consensus        74 dpt~~~lE~~~a~l~G~e~--al~~~SGt~An~~a~~~l~----~~Gd~Vi~~~~f~-~~~~~i---~~~g~~~~~~~~~  143 (456)
T d1c7ga_          74 SENFYHLEKTVKELFGFKH--IVPTHQGRGAENLLSQLAI----KPGQYVAGNMYFT-TTRFHQ---EKNGATFVDIVRD  143 (456)
T ss_dssp             CHHHHHHHHHHHHHHCCSE--EEEESSHHHHHHHHHHHHC----CTTEEEEESSCCH-HHHHHH---HHTTEEEEECBCG
T ss_pred             CchHHHHHHHHHHHhCCCe--EEECCCHHHHHHHHHHHhc----CCCCeEecCcchH-HHHHHH---HHcCceeeecccc
Confidence            3789999999999999976  9999999999999999998    8999999866533 222223   3348777765442


Q ss_pred             ----------CCCCCCHHHHHHhcCCC----ceEEEEeccccccc-cccC---hHHHHHHHHhcCCcEEEehhhhcCCCc
Q 040741          180 ----------ADGIVNLDELRAAIRPD----TGLISVMAVNNEIG-VIQP---MEEIGQICKEFKIPFHTDAAQALGKIP  241 (457)
Q Consensus       180 ----------~~~~~d~~~le~~i~~~----t~li~i~~~~~~~G-~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~  241 (457)
                                .++.+|+++|+++|+++    +.+++++.++|+.| .+.+   +++|.++|++||+++|+|+|+.++...
T Consensus       144 ~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~~~a~  223 (456)
T d1c7ga_         144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAY  223 (456)
T ss_dssp             GGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHH
T ss_pred             ccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhhcchh
Confidence                      34689999999999743    46899999999865 4444   778899999999999999998754321


Q ss_pred             ------ccCCC-----------CcccEEEeccccccCCCCceEEEEecCC-Cccccccc--cCCccccccccCCCChhHH
Q 040741          242 ------VDVEK-----------WNVSLMSLSGHKIYGPKGVGALYMRRRP-RIRVEPLI--NGGGQERGIRSGTLPTPLI  301 (457)
Q Consensus       242 ------~~~~~-----------~~~Di~~~s~~K~~g~~G~G~l~~~~~~-~~~~~~~~--~~~~~~~~~~~~t~~~~~~  301 (457)
                            .....           ..+|++++|++|.++..+.|+++.+++. .++++...  .++.    ...+..+...+
T Consensus       224 ~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~GG~i~~~~~~l~~~~r~~~~~~~g~----~~~g~~~~~~~  299 (456)
T d1c7ga_         224 FIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGM----PSYGGLAGRDM  299 (456)
T ss_dssp             HHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCC----TTTTTCCHHHH
T ss_pred             hhcccccccCCCChhhhccccccccccEEEeccccccccceeEEEcCCHHHHHHHHHhccccCCC----cccchhhHHHH
Confidence                  00000           1369999999996654434888877642 23332221  1111    11233444444


Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE----ccc-----cchHHHhcc--
Q 040741          302 VGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF----AYV-----EGESLLMGL--  370 (457)
Q Consensus       302 ~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~~~~~l--  370 (457)
                      .++...+....  -....++..++.+++.+.|.+ . ++.+..+.. .  ..+.+..    +..     .+.++...+  
T Consensus       300 ~a~a~~l~e~~--~~~~l~~r~~~~~~L~e~L~~-~-g~~vv~p~g-~--~~v~vda~~~~~~i~~~~~~~~~~~~~l~~  372 (456)
T d1c7ga_         300 EAMAIGLREAM--QYEYIEHRVKQVRYLGDKLRE-A-GVPIVEPTG-G--HAVFLDARRFCPHLTQDQFPAQSLAASIYM  372 (456)
T ss_dssp             HHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHH-T-TCCBCSSCC-S--SEEEEEHHHHCTTSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHh-c-cCCcccCCC-C--cceeEechhhccCCCcccccHHHHHHHHHH
Confidence            44433333222  133445556677888888888 3 554444322 1  1111111    111     122333333  


Q ss_pred             -cCeEecccCccCCCCCChhHHHHHcCCCcc------CCCCeEEEecCCC-CCHHHHHHHHHHHHHHHHHHHhc
Q 040741          371 -KEVAVSSGSACTSASLEPSYVLRALGVDED------MAHTSIRFGIGRF-TTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       371 -~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~------~~~~~iRi~~~~~-~t~edid~~~~~l~~~~~~~~~~  436 (457)
                       .||...+-..            ...+..+.      .....+||+++.. .|++|||+++++|++++++..+.
T Consensus       373 ~~GIr~~~~g~------------~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i  434 (456)
T d1c7ga_         373 ETGVRSMERGI------------VSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI  434 (456)
T ss_dssp             HHSEECEEESH------------HHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGC
T ss_pred             HhCeeecccCc------------cccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhc
Confidence             3553221110            01122221      2335799998753 48999999999999998755443

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.86  E-value=4.2e-21  Score=186.54  Aligned_cols=329  Identities=15%  Similarity=0.125  Sum_probs=205.4

Q ss_pred             HHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcC
Q 040741           74 LDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQ  153 (457)
Q Consensus        74 ~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~  153 (457)
                      ++++.+.+++.+-..      .|    +.+.++|+.+++++|.+.  +++++|||.|+.++++++..   ++||+||++.
T Consensus         4 ~~~~~~~l~~~~~~~------~G----~~~~~fE~~~~~~~~~~~--~~~~~SgT~Al~lal~~l~~---~~gdeVi~p~   68 (374)
T d1o69a_           4 LKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKSEN--ALALNSATAALHLALRVAGV---KQDDIVLASS   68 (374)
T ss_dssp             HHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCCSE--EEEESCHHHHHHHHHHHTTC---CTTCEEEEES
T ss_pred             HHHHHHHHhcCCcCC------CC----HHHHHHHHHHHHHHCcCe--EEEeCCHHHHHHHHHHHcCC---CCcCEEEeCC
Confidence            567777776532110      12    678999999999999865  99999999999999999854   7899999999


Q ss_pred             CCCcchHHHHHHHHhcCcEEEEEeCCCCCCC-CH--HHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEE
Q 040741          154 TEHKCVLDSCRHLQQEGFEITYLPVGADGIV-NL--DELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFH  230 (457)
Q Consensus       154 ~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~-d~--~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li  230 (457)
                      .+|++...++..+   |+++++++++++... +.  ++++..+..++++|++.+.   .|...++++|.++|+++|++||
T Consensus        69 ~t~~a~~~~~~~~---g~~pv~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~---~G~~~d~~~i~~~~~~~~i~vI  142 (374)
T d1o69a_          69 FTFIASVAPICYL---KAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTHL---YGNAAKMDEIVEICKENDIVLI  142 (374)
T ss_dssp             SSCGGGTHHHHHT---TCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECG---GGCCCCHHHHHHHHHHTTCEEE
T ss_pred             cchHhhHHHHhhc---cceeEecccccccccccccccccchhccccccccccccc---ccchhhhHHHHHHhhccCcchh
Confidence            9999999998887   999999999865432 33  3344677888999988876   7999999999999999999999


Q ss_pred             EehhhhcCCCccc--CCCCcccEEEeccc--cccCCCCceEEEEecCC-CccccccccCCccc-ccc---ccCC-CChhH
Q 040741          231 TDAAQALGKIPVD--VEKWNVSLMSLSGH--KIYGPKGVGALYMRRRP-RIRVEPLINGGGQE-RGI---RSGT-LPTPL  300 (457)
Q Consensus       231 ~D~a~~~g~~~~~--~~~~~~Di~~~s~~--K~~g~~G~G~l~~~~~~-~~~~~~~~~~~~~~-~~~---~~~t-~~~~~  300 (457)
                      .|+||++|+..-+  +... -|+.++||+  |.++..|.|+++.+++. .+++......+... ...   ..|. .-+..
T Consensus       143 ED~a~a~g~~~~~~~~G~~-gd~~~fSf~~~K~l~tgeGG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~~~~G~N~rm~e  221 (374)
T d1o69a_         143 EDAAEALGSFYKNKALGTF-GEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSN  221 (374)
T ss_dssp             EECTTCTTCEETTEETTSS-SSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCH
T ss_pred             hhhhhhhcceECCeecCCC-CceEEEeccCccccccccceeehhhhHHHHHhhccccccccccccccccccCCccccccc
Confidence            9999999876322  1112 266666665  86655555888877642 22332222211110 000   0111 01111


Q ss_pred             HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEE-c-------------------
Q 040741          301 IVGFGSACEIAK-KEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSF-A-------------------  359 (457)
Q Consensus       301 ~~al~~al~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------  359 (457)
                      +.   +|+...+ ..++...++.+++++++.+.|.+ ...+. ...........+.+.+ .                   
T Consensus       222 i~---Aaig~~qL~~l~~~i~~r~~i~~~y~~~L~~-~~~~~-~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (374)
T d1o69a_         222 VL---GAIGVAQMEVLEQRVLKKREIYEWYKEFLGE-YFSFL-DELENSRSNRWLSTALINFDKNELNACQKDINISQKN  296 (374)
T ss_dssp             HH---HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT-TEECC-CCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCC
T ss_pred             hh---hhhhHHHHhhhhhhcchhHHHHHHHHhhccc-ccccc-ccccCCCCChhheeeeeccccccccccccccccchhh
Confidence            21   1222221 24677778888889999999877 32221 1111111111111111 0                   


Q ss_pred             ---cccchHHHhcc--cCeEecccCccCCCCCChhHHHH---HcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          360 ---YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLR---ALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       360 ---~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~---~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                         ......+...|  +||.++....  +....|-+.-.   .+...+......|.+.+....|.+||+++++.|.++++
T Consensus       297 ~~~~~~r~~l~~~L~~~gI~~r~~y~--pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~~I~~~lk  374 (374)
T d1o69a_         297 ITLHPKISKLIEDLKNKQIETRPLWK--AMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  374 (374)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCBCCCC--CGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHHHHHCCCCEEEeCc--chhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHHHHHHHHC
Confidence               01123455556  5776654321  11111111000   00001112346788999888999999999999998874

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.86  E-value=2.3e-21  Score=190.14  Aligned_cols=322  Identities=12%  Similarity=0.002  Sum_probs=201.8

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCC--hH---
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKEIIFTSG--AT---  128 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~~t~g--~T---  128 (457)
                      |.|..+..++.+.|.+++.+......      .+  +|.......++|+.+++++..      +++.++.+.+  ++   
T Consensus        38 ~~d~~~~~~~~~~V~~a~~~~~~~~~------~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~  109 (401)
T d7aata_          38 YRDDNGKPYVLNCVRKAEAMIAAKKM------DK--EYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSL  109 (401)
T ss_dssp             CCCTTSCCCCCHHHHHHHHHHHHTTC------CC--CCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             CcCCCCCCCCCHHHHHHHHHHhhCCC------CC--CCCCCCCCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHH
Confidence            34444555777889998887765321      11  122224566777788776532      3445555443  22   


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhc---CCCceEEEEe
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAI---RPDTGLISVM  203 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i---~~~t~li~i~  203 (457)
                      .++.+++++++    ++||.|+++.+.|+.+...++..   |++++.++..  .++..|++.+++.+   .+++++++++
T Consensus       110 ~~~~~~~~~l~----~pGd~Vlv~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~  182 (401)
T d7aata_         110 RVGANFLQRFF----KFSRDVYLPKPSWGNHTPIFRDA---GLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHA  182 (401)
T ss_dssp             HHHHHHHHHHC----TTCCEEEEEESCCTTHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEES
T ss_pred             HHHHHhhHhhc----CCCceEEEecCCCcchhhHHHHc---CCeEEEEeccccccccccHHHHHHHHhcCCCceEEEEec
Confidence            34555556666    99999999999999999888777   9999999875  44567888887776   4678999999


Q ss_pred             ccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCC-CCcccEEEeccccccCCCC--ceEE
Q 040741          204 AVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV---------DVE-KWNVSLMSLSGHKIYGPKG--VGAL  268 (457)
Q Consensus       204 ~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~-~~~~Di~~~s~~K~~g~~G--~G~l  268 (457)
                      ++|||||.+++   +++|+++|++|+++++.|++|..-...-         ... ....-+++.|++|.++..|  +|++
T Consensus       183 ~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~RiG~~  262 (401)
T d7aata_         183 CAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGERAGAF  262 (401)
T ss_dssp             SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGGCEEEE
T ss_pred             CCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecccccee
Confidence            99999999988   6789999999999999999997433210         000 1122366678889666444  8999


Q ss_pred             EEecCCCccccccccCCccccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCC--e
Q 040741          269 YMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLDG--V  340 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~  340 (457)
                      ++.....+....................+......+...+.      .....++..+++++++++.+.+.|++..+.  +
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~  342 (401)
T d7aata_         263 TVICRDAEEAKRVESQLKILIRPMYSNPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNW  342 (401)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCC
T ss_pred             ecchHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            99887655443322110000001112333333333322222      122346677788888899999999882211  1


Q ss_pred             EEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHH
Q 040741          341 VVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEA  417 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~e  417 (457)
                      ....+.    .++ ++++ +.+. ++.+.|   .||.+.+|                           +||++.. .+++
T Consensus       343 ~~~~~~----~G~-F~~~-~ls~-e~~~~L~~e~gV~~~pg---------------------------~Ris~a~-~~~~  387 (401)
T d7aata_         343 QHITDQ----IGM-FCFT-GLKP-EQVERLTKEFSIYMTKD---------------------------GRISVAG-VASS  387 (401)
T ss_dssp             HHHHHC----CSS-EEEC-CCCH-HHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTT
T ss_pred             ceECCC----CeE-EEec-CCCH-HHHHHHHHhCCEEECCC---------------------------cEEEecc-CCHH
Confidence            111111    222 2222 2333 334444   47777644                           4899875 3468


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQVE  431 (457)
Q Consensus       418 did~~~~~l~~~~~  431 (457)
                      +||+++++|.++++
T Consensus       388 ~i~~la~ai~~v~k  401 (401)
T d7aata_         388 NVGYLAHAIHQVTK  401 (401)
T ss_dssp             THHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhC
Confidence            89999999998764

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.86  E-value=2.9e-21  Score=190.14  Aligned_cols=330  Identities=13%  Similarity=0.039  Sum_probs=206.0

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCc--EEEeCChHHH
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKE--IIFTSGATES  130 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~--i~~t~g~T~a  130 (457)
                      +|.|-.+..++.+.|.+++.........     .+.  |.......++|+.+++++.-      .++.  ++.+.+++.+
T Consensus        39 ~~~d~~g~~~~~~~V~~a~~~~~~~~~~-----~~~--Y~p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (412)
T d1ajsa_          39 AYRTDDCQPWVLPVVRKVEQRIANNSSL-----NHE--YLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGA  111 (412)
T ss_dssp             CCCCTTSCCCCCHHHHHHHHHHHTCTTC-----CCC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred             CCcCCCCCCCCcHHHHHHHHHHHhCCCc-----CCC--CCCCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhH
Confidence            4666666677888898887766543211     121  22224566788888887621      2232  5667778777


Q ss_pred             HHHHHHHhhhhh---cCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEE-eCC--CCCCCCHHHHHHh---cCCCceEEE
Q 040741          131 NNVSIKGVMHFY---KDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYL-PVG--ADGIVNLDELRAA---IRPDTGLIS  201 (457)
Q Consensus       131 ~~~al~~~~~~~---~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v-~~~--~~~~~d~~~le~~---i~~~t~li~  201 (457)
                      +..+..++...+   .++||.|+++++.|+.+...++.+   |.+++.+ +..  .....|++.+++.   +.+++++++
T Consensus       112 ~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~---G~~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~il  188 (412)
T d1ajsa_         112 LRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTA---GFKDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFVL  188 (412)
T ss_dssp             HHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHT---TCSCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHc---CCeEEEeecccccccccccHHHHHHHHHhccCCcEEEE
Confidence            776666543221   289999999999999999888776   8765433 332  3345787776655   467889999


Q ss_pred             EeccccccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc----------cCCCCcccEEEeccccccCCCC--ce
Q 040741          202 VMAVNNEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV----------DVEKWNVSLMSLSGHKIYGPKG--VG  266 (457)
Q Consensus       202 i~~~~~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~----------~~~~~~~Di~~~s~~K~~g~~G--~G  266 (457)
                      ++.+|||||.+.+   +++|+++|++||++++.|++|..-...-          ........+++.|++|.++..|  +|
T Consensus       189 ~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G  268 (412)
T d1ajsa_         189 HACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVG  268 (412)
T ss_dssp             ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEE
T ss_pred             ecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCCCcc
Confidence            9999999999988   7889999999999999999997432210          0111134577778889665444  89


Q ss_pred             EEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC-
Q 040741          267 ALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC------EIAKKEMDYDHKRITALHDRLLNGIKEKLDG-  339 (457)
Q Consensus       267 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-  339 (457)
                      ++++.......+.................++.....++...+      +...++++...++++++++.+.+.|++ +.. 
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~-~~~~  347 (412)
T d1ajsa_         269 NLTVVAKEPDSILRVLSQMQKIVRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEA-LKTP  347 (412)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCS
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCC
Confidence            999987665544322211000000111233333333333222      223345777888888999999999988 421 


Q ss_pred             --eEEeCCCCCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          340 --VVVNGSMERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       340 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                        +..+.+.    .++  |.+.+.+.+.....+  .||.+.+|                         +  ||++.. .+
T Consensus       348 ~~~~~i~~~----~G~--F~~~~ls~~~v~~L~~e~gV~~vpg-------------------------~--Ri~~ag-~~  393 (412)
T d1ajsa_         348 GTWNHITDQ----IGM--FSFTGLNPKQVEYLINQKHIYLLPS-------------------------G--RINMCG-LT  393 (412)
T ss_dssp             SCCHHHHHC----CSS--EEECCCCHHHHHHHHHTTCEECCTT-------------------------S--EEEGGG-CC
T ss_pred             CCeeeecCC----CeE--EEecCCCHHHHHHHHHhCCEEEeCC-------------------------C--eEEecc-CC
Confidence              1111111    222  233334444433332  57776654                         2  888764 35


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~~  433 (457)
                      +++||+++++|.++++++
T Consensus       394 ~~~i~~~a~aI~~av~~~  411 (412)
T d1ajsa_         394 TKNLDYVATSIHEAVTKI  411 (412)
T ss_dssp             TTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHhc
Confidence            789999999999999875

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.85  E-value=1.4e-19  Score=173.95  Aligned_cols=335  Identities=14%  Similarity=0.195  Sum_probs=213.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHH-HHHHHHHHHhCCCCCc---EEEeCChHHHHHHHHHH
Q 040741           64 QATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVE-TARSQIADLIGASPKE---IIFTSGATESNNVSIKG  137 (457)
Q Consensus        64 ~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~-~~~~~la~~~g~~~~~---i~~t~g~T~a~~~al~~  137 (457)
                      ++.+.+++.|++++...+.+.|  |.|..+.|. |-...+.++ -+.++..++|+++..+   =+=..||+.|+..++.+
T Consensus        34 aSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~-G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~a  112 (463)
T d2a7va1          34 ASENFCSRAALEALGSCLNNKYSEGYPGKRYYG-GAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTA  112 (463)
T ss_dssp             TTCCCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHH
T ss_pred             ccCCcCCHHHHHHhcchhcccccCCCCCccccC-CchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHH
Confidence            4566899999999999998766  456653332 333333344 3678899999998763   13344588899999999


Q ss_pred             hhhhhcCCCCEEEEcCCCCcchHHHHH-----HHHhcC--cEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEeccccc
Q 040741          138 VMHFYKDKKRHVITTQTEHKCVLDSCR-----HLQQEG--FEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNNE  208 (457)
Q Consensus       138 ~~~~~~~~g~~vi~~~~~h~~~~~~~~-----~~~~~G--~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~~  208 (457)
                      ++    +|||.|+..+..+.+......     .....|  ++...++++ .++.+|.+++++.++ .++++|++....+ 
T Consensus       113 ll----~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~~kPklIi~G~S~y-  187 (463)
T d2a7va1         113 LL----QPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAY-  187 (463)
T ss_dssp             HC----CSCEECCC-------------------------------CCBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC-
T ss_pred             Hc----CCCceEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhhcCCceEEeccccc-
Confidence            99    999999987766555543211     010012  344555556 568899999999875 5789998866543 


Q ss_pred             cccccChHHHHHHHHhcCCcEEEehhhhcC-----CCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCC-------
Q 040741          209 IGVIQPMEEIGQICKEFKIPFHTDAAQALG-----KIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPR-------  275 (457)
Q Consensus       209 ~G~~~~l~~i~~l~~~~~v~li~D~a~~~g-----~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~-------  275 (457)
                       -...|+++++++|++.|.+++.|.+|-.|     ..+-++ + .+|++++|.|| +.||.| |+++.+++..       
T Consensus       188 -~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~-~-~aDvvt~tTHKTlrGPrg-GiIl~~~~~~~~~~~~~  263 (463)
T d2a7va1         188 -ARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPF-K-HADIVTTTTHKTLRGARS-GLIFYRKGVKAVDPKTG  263 (463)
T ss_dssp             -CSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGG-G-TCSEEEEESSGGGCSCSC-EEEEEECSEEEEETTTE
T ss_pred             -ccccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChh-h-hhhhhhchhhhhhcCCCc-eEEEEcccccccccccC
Confidence             36678999999999999999999999643     333233 2 37999999999 789996 9999887421       


Q ss_pred             --------ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          276 --------IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       276 --------~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                              +++.....-+      ..|.+-...++++..++..+.. +++...+++.++++.|.+.|.+  .|+.++...
T Consensus       264 ~~~~~~~~~~i~~avFPg------~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~--~G~~vv~gg  335 (463)
T d2a7va1         264 REIPYTFEDRINFAVFPS------LQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLE--RGYSLVSGG  335 (463)
T ss_dssp             EEEECCCHHHHHHHHTTT------TCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGGS
T ss_pred             ccchhHHHHHhhhhcCcc------cchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--CCCeeecCC
Confidence                    1111111111      1245666778888888887664 6889999999999999999999  588887543


Q ss_pred             CCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC----CCHHH
Q 040741          347 ERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF----TTEAE  418 (457)
Q Consensus       347 ~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~----~t~ed  418 (457)
                      ..  ...+.+.+.  +.++......|  .||.+.-.....-              ......+.|||+....    ..++|
T Consensus       336 Td--nHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D--------------~~~~~~sGiRiGT~a~TtrG~~e~d  399 (463)
T d2a7va1         336 TD--NHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD--------------RSAITPGGLRLGAPALTSRQFREDD  399 (463)
T ss_dssp             CS--SSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTC--------------CCSSSCSEEEEESHHHHHTTCCHHH
T ss_pred             CC--CceeeeeccccCCCHHHHHHHHHhccCccCCccCCCC--------------CCCCCCCceEeCCHHHHhCCCCHHH
Confidence            32  334445553  35566666566  4555543221100              1122347899997554    46799


Q ss_pred             HHHHHHHHHHHHHH
Q 040741          419 VDRAIELTVKQVEK  432 (457)
Q Consensus       419 id~~~~~l~~~~~~  432 (457)
                      +.++.+.|.++++.
T Consensus       400 m~~iA~~I~~~l~~  413 (463)
T d2a7va1         400 FRRVVDFIDEGVNI  413 (463)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988864

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.84  E-value=2.6e-20  Score=182.21  Aligned_cols=284  Identities=11%  Similarity=0.058  Sum_probs=188.4

Q ss_pred             HHHHHHHHHHh---C---CCCCcEEEeCChHHHHHHHHHHhhhhh----cCCCCEEEEcCCCCcchHHHHHHHHhcCcEE
Q 040741          104 ETARSQIADLI---G---ASPKEIIFTSGATESNNVSIKGVMHFY----KDKKRHVITTQTEHKCVLDSCRHLQQEGFEI  173 (457)
Q Consensus       104 ~~~~~~la~~~---g---~~~~~i~~t~g~T~a~~~al~~~~~~~----~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v  173 (457)
                      .++++.|+++.   |   .++.+|++++|+|+++++++.++.+..    .+++++|+++.|.|+.+...++.+   |.+.
T Consensus       103 ~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~---~~~~  179 (425)
T d2hoxa1         103 FELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYF---DKKG  179 (425)
T ss_dssp             HHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHS---CBTT
T ss_pred             HHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHc---CCCC
Confidence            35666666654   3   244569999999999999999984210    168899999999999998887776   5443


Q ss_pred             EEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEE
Q 040741          174 TYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMS  253 (457)
Q Consensus       174 ~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~  253 (457)
                      ..++      +|.+.++++++++++++++++||||+|.+..       +-.+++.+|.|+++.......-......++++
T Consensus       180 ~~~~------~D~~~~~~~~~~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f~~~~~~~~~~Ivl  246 (425)
T d2hoxa1         180 YVWA------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHYTPIKYKADEDILL  246 (425)
T ss_dssp             EEEE------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTTSCCCSCBCCSEEE
T ss_pred             CccC------CCHHHHHhhCCCCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccccchhhhcCCeEEE
Confidence            3333      4678888889999999999999999998732       22358999999999643321112233568999


Q ss_pred             eccccccCCCC--ceEEEEecCCC-ccccccccCCccccccccCCCChhHHHHHHHHHHHHHH-----------hhHHHH
Q 040741          254 LSGHKIYGPKG--VGALYMRRRPR-IRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-----------EMDYDH  319 (457)
Q Consensus       254 ~s~~K~~g~~G--~G~l~~~~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-----------~~~~~~  319 (457)
                      .|++|.||.+|  +||++++++.+ +++.....       .....++.....+...+++....           .++..+
T Consensus       247 ~S~SK~fglaGlRiGw~i~~~~~i~~~~~~~~~-------~~~~~vs~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~  319 (425)
T d2hoxa1         247 FTMSKFTGHSGSRFGWALIKDESVYNNLLNYMT-------KNTEGTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGF  319 (425)
T ss_dssp             EEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHH-------HHTSSCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHH
T ss_pred             EeCHHhccCcchheeeEEeCCHHHHHHHHHhhc-------cCcccCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999888666  99988876533 23322221       11124455555555555554321           145566


Q ss_pred             HHHHHHHHHHHHHHhhcCCCeEEeCCCCCc-----------ccceEEEEEccccchHHHhcc--cCeEecccCccCCCCC
Q 040741          320 KRITALHDRLLNGIKEKLDGVVVNGSMERR-----------YIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASL  386 (457)
Q Consensus       320 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~  386 (457)
                      +.++++.+++.+.|.+ .+.+.+...+...           .+.+..+.....+.......|  +||.+.+|..+     
T Consensus       320 ~~l~~r~~~l~~~L~~-~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~~~~~~~~lL~e~gI~v~pGs~F-----  393 (425)
T d2hoxa1         320 KKLRERWVNITALLDQ-SDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWEEDKDCYQTFQNGRINTQNGVGF-----  393 (425)
T ss_dssp             HHHHHHHHHHHHHHTT-SSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSGGGCSHHHHHHHTTEECEEGGGG-----
T ss_pred             HHHHHHHHHHHHHHHh-cCCceeeccCCccceeeeeeccCCCcceeeeeCCCChHHHHHHHHHhCCEEEEechhc-----
Confidence            7777888888888888 6665543322211           122333333322222333333  79999999754     


Q ss_pred             ChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH
Q 040741          387 EPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVE  431 (457)
Q Consensus       387 ~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~  431 (457)
                               |..    .+++||++..  ++|+++.++++|+++++
T Consensus       394 ---------G~~----~~yvRisl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         394 ---------EAS----SRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             ---------TSC----TTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             ---------CCC----CCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence                     221    2799999864  78999999999999885

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.84  E-value=4.5e-19  Score=171.04  Aligned_cols=337  Identities=16%  Similarity=0.175  Sum_probs=229.9

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHH-HHHHHHHHhCCCCCc--E-EEeCChHHHHHHHHH
Q 040741           63 MQATTPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVET-ARSQIADLIGASPKE--I-IFTSGATESNNVSIK  136 (457)
Q Consensus        63 ~~~~~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~-~~~~la~~~g~~~~~--i-~~t~g~T~a~~~al~  136 (457)
                      .++.+.+++.|++++...+.+.|  |.|+.+.|. |-...+.++. +.++..++||++++.  + +=..||+.|+..++.
T Consensus        37 IaSEN~~S~~v~~algS~l~nkYaeG~pg~Ryy~-G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~  115 (470)
T d1rv3a_          37 IASENFASRAVLEALGSCLNNKYSLGYPGQRYYG-GTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYT  115 (470)
T ss_dssp             CTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSS-CCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHH
T ss_pred             ecCCCcCCHHHHHHhcchhcccccCCCCCccccC-CchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHH
Confidence            34566899999999999998766  566654333 4343344444 668889999997542  2 334459999999999


Q ss_pred             HhhhhhcCCCCEEEEcCCCCcchHHHHH-------HHHhcCcEEEEEeCC-CCCCCCHHHHHHhcC-CCceEEEEecccc
Q 040741          137 GVMHFYKDKKRHVITTQTEHKCVLDSCR-------HLQQEGFEITYLPVG-ADGIVNLDELRAAIR-PDTGLISVMAVNN  207 (457)
Q Consensus       137 ~~~~~~~~~g~~vi~~~~~h~~~~~~~~-------~~~~~G~~v~~v~~~-~~~~~d~~~le~~i~-~~t~li~i~~~~~  207 (457)
                      +++    +|||.|+..+..+.+......       ......++....+++ +++.+|.+++++..+ .++++|++....+
T Consensus       116 all----~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~~kPklIi~G~S~y  191 (470)
T d1rv3a_         116 ALV----EPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY  191 (470)
T ss_dssp             HHT----CTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHHCCSEEEECCSSC
T ss_pred             Hhc----CCCCeEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHhhCcceEeechhhc
Confidence            999    999999987655443332210       001114678888888 458999999999775 5789998866543


Q ss_pred             ccccccChHHHHHHHHhcCCcEEEehhhhc-----CCCcccCCCCcccEEEecccc-ccCCCCceEEEEecCCCc-----
Q 040741          208 EIGVIQPMEEIGQICKEFKIPFHTDAAQAL-----GKIPVDVEKWNVSLMSLSGHK-IYGPKGVGALYMRRRPRI-----  276 (457)
Q Consensus       208 ~~G~~~~l~~i~~l~~~~~v~li~D~a~~~-----g~~~~~~~~~~~Di~~~s~~K-~~g~~G~G~l~~~~~~~~-----  276 (457)
                        -...|+++++++|++.|.+++.|.+|-.     |..+-.+ + .+|++++|.|| +.||.| |+|+.+++...     
T Consensus       192 --~r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl-~-~aDvvt~tTHKtlrGPrg-GiI~~~~~~~~~~~~~  266 (470)
T d1rv3a_         192 --SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPF-E-HCHVVTTTTHKTLRGCRA-GMIFYRRGVRSVDPKT  266 (470)
T ss_dssp             --CSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGG-G-TCSEEEEESSGGGCCCSC-EEEEEECSBCC-----
T ss_pred             --cccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChh-h-eeeeeeeehhhhccCCcc-eEEEEccccccccccc
Confidence              3667899999999999999999999964     3333333 2 36999999999 778997 99998864211     


Q ss_pred             ----------cccccccCCccccccccCCCChhHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCC
Q 040741          277 ----------RVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGS  345 (457)
Q Consensus       277 ----------~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  345 (457)
                                ++.....-      ...|.+-...++++..+++.+.. ++....+++.++++.+.+.|.+  .|+.+...
T Consensus       267 ~~~~~~~~~~~i~~avFP------g~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~NAk~La~~L~~--~G~~v~~g  338 (470)
T d1rv3a_         267 GKEILYNLESLINSAVFP------GLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALVE--LGYKIVTG  338 (470)
T ss_dssp             --CCBCCHHHHHHHHHTT------TTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH--TTCEEGGG
T ss_pred             cchhHHHHHHHHhhhcCc------cccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHh--CCceeccC
Confidence                      11111110      11245566778888888877654 6889999999999999999999  58888753


Q ss_pred             CCCcccceEEEEEc--cccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC----CCCHH
Q 040741          346 MERRYIGNLNLSFA--YVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR----FTTEA  417 (457)
Q Consensus       346 ~~~~~~~~~~~~~~--~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~----~~t~e  417 (457)
                      ...  ...+.+.+.  +.++......|  .||.+.-...  |..            ......+.|||+...    ...++
T Consensus       339 gTd--nHlvlvdl~~~g~~g~~ae~~Le~~gI~~Nkn~i--P~D------------~~~~~~sGiRiGT~alTtrG~~e~  402 (470)
T d1rv3a_         339 GSD--NHLILVDLRSKGTDGGRAEKVLEACSIACNKNTC--PGD------------KSALRPSGLRLGTPALTSRGLLEK  402 (470)
T ss_dssp             SCS--SSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECC--SSC------------SCTTSCCEEEEECHHHHHTTCCHH
T ss_pred             CCC--CceEEEeecccCCcHHHHHHHHHHcCcEECCCcC--CCC------------CCCCCCCeeEecCHHHHhCCCCHH
Confidence            322  344444443  45666666666  3555432211  110            011234789999654    45689


Q ss_pred             HHHHHHHHHHHHHHHH
Q 040741          418 EVDRAIELTVKQVEKL  433 (457)
Q Consensus       418 did~~~~~l~~~~~~~  433 (457)
                      |+.++.+.|.++++..
T Consensus       403 dm~~iA~~I~~~l~~~  418 (470)
T d1rv3a_         403 DFQKVAHFIHRGIELT  418 (470)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988643

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.84  E-value=3.9e-20  Score=177.76  Aligned_cols=308  Identities=14%  Similarity=0.117  Sum_probs=208.7

Q ss_pred             cchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHH-HhcCc
Q 040741           93 HLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHL-QQEGF  171 (457)
Q Consensus        93 ~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~-~~~G~  171 (457)
                      +.|++...+....+++.++++-|.+.  ++..+||..|+.. +..++    .+|++|++....|.+....+... .+.|.
T Consensus        47 y~YsR~gnPT~~~lE~~la~LE~~~~--a~~~sSGmaAi~~-~l~~l----~~gd~iv~~~~~yg~t~~~~~~~l~~~gi  119 (393)
T d1n8pa_          47 YEYSRSQNPNRENLERAVAALENAQY--GLAFSSGSATTAT-ILQSL----PQGSHAVSIGDVYGGTHRYFTKVANAHGV  119 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCSE--EEEESCHHHHHHH-HHHTS----CSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred             eeeeCCCChHHHHHHHHHHHHhCCce--EEEecCchhHHHh-hhhcc----cCCCeeeeeeeecccchhhhhhhhhcccc
Confidence            45566666899999999999998754  7778888877754 44555    68999999998888887776644 55688


Q ss_pred             EEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccChHHHHHHHH----hcCCcEEEehhhhcCCCcccCCCC
Q 040741          172 EITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQPMEEIGQICK----EFKIPFHTDAAQALGKIPVDVEKW  247 (457)
Q Consensus       172 ~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~l~~i~~l~~----~~~v~li~D~a~~~g~~~~~~~~~  247 (457)
                      ++.+++.      +.++++++++++|++|+++.+.||+..+.|+++|+++||    ++|+++++|.+.+.+.. ...-++
T Consensus       120 ~~~~~~~------~~~~~~~~i~~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVDnT~atP~~-~~Pl~~  192 (393)
T d1n8pa_         120 ETSFTND------LLNDLPQLIKENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYI-SNPLNF  192 (393)
T ss_dssp             CCEEESS------HHHHHHHHSCSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHH-CCGGGG
T ss_pred             eeEEeec------chHHHHHHhhhhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEecCccCccc-CCchhh
Confidence            8888752      467899999999999999999999999999999999999    67899999999864432 122345


Q ss_pred             cccEEEeccccccCCCC---ceEEEEecCC-CccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHH
Q 040741          248 NVSLMSLSGHKIYGPKG---VGALYMRRRP-RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRIT  323 (457)
Q Consensus       248 ~~Di~~~s~~K~~g~~G---~G~l~~~~~~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~  323 (457)
                      |+|+++-|.+|+++.-+   .|+++.++.. .+++.....       ...+.+++..+..+...    .+.+.-++++..
T Consensus       193 GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~-------~~G~~~~p~~a~ll~rg----l~Tl~lR~~~~~  261 (393)
T d1n8pa_         193 GADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQN-------AIGAIPSPFDAWLTHRG----LKTLHLRVRQAA  261 (393)
T ss_dssp             TCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHH-------HHCCCCCHHHHHHHHHH----HTTHHHHHHHHH
T ss_pred             CCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHh-------hcCCCCChHHHHHHHhC----CcchhhHHHHHH
Confidence            79999999999665433   5777766532 233332221       11224555444433222    235788888999


Q ss_pred             HHHHHHHHHHhhcCCCeEEeCCC---C-------------CcccceEEEEEccc-c-chHHHhccc--CeEecccCcc--
Q 040741          324 ALHDRLLNGIKEKLDGVVVNGSM---E-------------RRYIGNLNLSFAYV-E-GESLLMGLK--EVAVSSGSAC--  381 (457)
Q Consensus       324 ~~~~~l~~~l~~~~~~~~~~~~~---~-------------~~~~~~~~~~~~~~-~-~~~~~~~l~--~i~~~~g~~~--  381 (457)
                      +++..+.+.|+++.+.+..+-.|   .             ...++++.|.+++- + ...++..|+  .++..-|...  
T Consensus       262 ~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~~~~~G~~~sf~l~~~~~~~~~f~~~l~l~~~~~SlGg~~SL  341 (393)
T d1n8pa_         262 LSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGGAEAASKFASSTRLFTLAESLGGIESL  341 (393)
T ss_dssp             HHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSCHHHHHHHHHHCSSSEECSCCCCSSCE
T ss_pred             HHHHHHHHHHHhccCcEEEEecccccccccchhhhhccccCCCCceEEEEEeCCHHHHHHHHHhCCcceecccCCCcCce
Confidence            99999999997623544333211   1             11255777777532 1 234566664  4445555432  


Q ss_pred             --CCCCCCh----hHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          382 --TSASLEP----SYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       382 --~~~~~~~----~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                        .+..+.+    .-..+..|+++    +.|||+++.    |++|.+++.|++++++.
T Consensus       342 i~~p~~~~h~~~~~~~r~~~gi~~----~liRlSvGl----E~~~DLi~Dl~~AL~~a  391 (393)
T d1n8pa_         342 LEVPAVMTHGGIPKEAREASGVFD----DLVRISVGI----EDTDDLLEDIKQALKQA  391 (393)
T ss_dssp             EECTTTTTSCSSCTTTTTTTSCCT----TEEEEECCS----SCHHHHHHHHHHHHHHH
T ss_pred             EeCchhhccccCCHHHHHhcCCCc----CEEEEEecc----CCHHHHHHHHHHHHHHh
Confidence              2222211    11223344444    799999997    78888888888888753

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=3.3e-21  Score=192.83  Aligned_cols=319  Identities=15%  Similarity=0.102  Sum_probs=187.3

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhc-----CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEE
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYK-----DKKRHVITTQTEHKCVLDSCRHLQQEGFEITY  175 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~-----~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~  175 (457)
                      +.+.++++.+++++|.+.  ++++++||+|+.+++++++....     .....++.....|.....+....   |..+..
T Consensus        74 ~~~~~le~~~a~l~G~~~--~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---G~~~~~  148 (467)
T d2v1pa1          74 RSYYALAESVKNIFGYQY--TIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQIN---GCTVRN  148 (467)
T ss_dssp             HHHHHHHHHHHHHTCCSE--EEEECSSTTTHHHHHHHHHHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHT---TCEEEE
T ss_pred             chHHHHHHHHHHHHCCCE--EEECCCCHHHHHHHHHHHhhccceEecCCCCcEEEEecccccccHHHHHHc---CCeeee
Confidence            677899999999999875  89999999999999999884211     22234555555555555554444   999988


Q ss_pred             EeCCC----------CCCCCHHHHHHhcCC----CceEEEEeccccccc-cccC---hHHHHHHHHhcCCcEEEehhhhc
Q 040741          176 LPVGA----------DGIVNLDELRAAIRP----DTGLISVMAVNNEIG-VIQP---MEEIGQICKEFKIPFHTDAAQAL  237 (457)
Q Consensus       176 v~~~~----------~~~~d~~~le~~i~~----~t~li~i~~~~~~~G-~~~~---l~~i~~l~~~~~v~li~D~a~~~  237 (457)
                      ++.+.          .+.+|++++++++++    .+++++++.+++..| .+.|   +++|.++|++||+++|+|+|+.+
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~  228 (467)
T d2v1pa1         149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA  228 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             cccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhh
Confidence            87652          357899999999863    467888998888765 4443   78899999999999999999875


Q ss_pred             CCCcc------cCC-----------CCcccEEEeccccccCCCCceEEEEecCCCcccccccc--CCccccccccCCCCh
Q 040741          238 GKIPV------DVE-----------KWNVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLIN--GGGQERGIRSGTLPT  298 (457)
Q Consensus       238 g~~~~------~~~-----------~~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~--~~~~~~~~~~~t~~~  298 (457)
                      +....      ...           ...+|++++|.+|.++.++.|+++.+++..........  +.........+..+.
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (467)
T d2v1pa1         229 ENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG  308 (467)
T ss_dssp             HHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCH
T ss_pred             ccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHH
Confidence            43210      000           01379999999995443334888877654433221111  000000111122232


Q ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEE--Eccccc-----hHHHhcc-
Q 040741          299 PLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLS--FAYVEG-----ESLLMGL-  370 (457)
Q Consensus       299 ~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~l-  370 (457)
                      ..+.++...+.  ........++..++.+++.+.|.+ . +..+.+...  ....+...  ++....     ..+...+ 
T Consensus       309 ~~~~a~~~~~~--~~~~~~~~~~~~~~~~~l~~~L~~-~-~~~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  382 (467)
T d2v1pa1         309 GAMERLAVGLY--DGMNLDWLAYRIAQVQYLVDGLEE-I-GVVCQQAGG--HAAFVDAGKLLPHIPADQFPAQALACELY  382 (467)
T ss_dssp             HHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHH-T-TCCEEEECS--SCEEEEHHHHSTTSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHhH--HhhhHHHHHHHHHHHHHHHHHHHh-c-CCcccCCCc--cceeecchhhcCCcchhhhhhHHHHHHHH
Confidence            33333322222  222356667778889999999988 4 333322111  11111110  011111     1222222 


Q ss_pred             --cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhc
Q 040741          371 --KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLREM  436 (457)
Q Consensus       371 --~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~~~  436 (457)
                        .||.......+...      .....+.........|||+++. ..|+||||+++++|++++++.++.
T Consensus       383 ~~~Gi~~~~~g~~~~~------~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~~~~~i  445 (467)
T d2v1pa1         383 KVAGIRAVEIGSFLLG------RDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANI  445 (467)
T ss_dssp             HHHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHHTGGGC
T ss_pred             HHcCCeeecccccccc------cccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence              34433221110000      0001122222345789999865 459999999999999999765443

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.83  E-value=1.7e-20  Score=187.51  Aligned_cols=317  Identities=14%  Similarity=0.104  Sum_probs=185.7

Q ss_pred             HHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhc---CCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEe
Q 040741          101 VAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYK---DKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLP  177 (457)
Q Consensus       101 ~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~---~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~  177 (457)
                      +.+.++++.+++++|.+.  ++|++|||+|++++++.++.+..   ..+..++.....|.+.....   ...|..++.+.
T Consensus        75 ~~~~~le~~~a~l~g~~~--~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~~~~---~~~g~~~~~~~  149 (465)
T d1ax4a_          75 RNYYDLKDKAKELFNYDY--IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHV---ELNGCKAINIV  149 (465)
T ss_dssp             HHHHHHHHHHHHHHCCCE--EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHHHHH---HHTTCEEEECB
T ss_pred             hHHHHHHHHHHHHHCCCE--EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhHHHH---HHcCCeeeccc
Confidence            577889999999999864  99999999999999999985422   22334455544343333333   33477776653


Q ss_pred             C----------CCCCCCCHHHHHHhcCC----CceEEEEeccccccccc-cC---hHHHHHHHHhcCCcEEEehhhhcCC
Q 040741          178 V----------GADGIVNLDELRAAIRP----DTGLISVMAVNNEIGVI-QP---MEEIGQICKEFKIPFHTDAAQALGK  239 (457)
Q Consensus       178 ~----------~~~~~~d~~~le~~i~~----~t~li~i~~~~~~~G~~-~~---l~~i~~l~~~~~v~li~D~a~~~g~  239 (457)
                      .          +..+.+|+++++++|++    .+.+++++.+++..|.. .|   +++|.++|++||+++|+|+|+..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~~~  229 (465)
T d1ax4a_         150 TEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCEN  229 (465)
T ss_dssp             CGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHH
T ss_pred             ccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchhhh
Confidence            3          24578999999999963    35677788887766543 44   7889999999999999999986432


Q ss_pred             Cc---------ccCCC--------CcccEEEeccccccCCCCceEEEEecCCCc--cccccc-cCCccccccccCCCChh
Q 040741          240 IP---------VDVEK--------WNVSLMSLSGHKIYGPKGVGALYMRRRPRI--RVEPLI-NGGGQERGIRSGTLPTP  299 (457)
Q Consensus       240 ~~---------~~~~~--------~~~Di~~~s~~K~~g~~G~G~l~~~~~~~~--~~~~~~-~~~~~~~~~~~~t~~~~  299 (457)
                      ..         .....        ...|++++|.+|.+++++.|+++.++....  ...... .+.+.   ...+.....
T Consensus       230 ~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  306 (465)
T d1ax4a_         230 AYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGF---VTYGGLAGR  306 (465)
T ss_dssp             HHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCS---TTTTTCCHH
T ss_pred             hcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccC---CCcchhhHH
Confidence            21         00000        025899999999666555688888764211  111111 00000   111122222


Q ss_pred             HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc----cccch-----HHHhc
Q 040741          300 LIVGFGSACEIAKK-EMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA----YVEGE-----SLLMG  369 (457)
Q Consensus       300 ~~~al~~al~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~  369 (457)
                      .+.++  +. ...+ ..+...++..++.+++.+.|.+ . ++.+..+..   ...+.....    .....     .....
T Consensus       307 ~~~a~--~~-~~~e~~~~~~~~~~~~~~~~l~~~L~~-~-g~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (465)
T d1ax4a_         307 DMAAM--VQ-GLEEGTEEEYLHYRIGQVKYLGDRLRE-A-GIPIQYPTG---GHAVFVDCKKLVPQIPGDQFPAQAVINA  378 (465)
T ss_dssp             HHHHH--HH-HHHHTTCHHHHHHHHHHHHHHHHHHHH-T-TCCBCSSCC---SSEEEEESTTTCTTSCGGGCHHHHHHHH
T ss_pred             HHHHH--hh-hhHHhhhHHHHHHHHHHHHHHHHHHHh-h-cCccccCCC---cceeeeehhhhcCCCccccchhHHHHHH
Confidence            22222  11 2222 2345566677788999999988 3 555554322   222222221    11111     11222


Q ss_pred             c---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC-CCCHHHHHHHHHHHHHHHHHHHhcChh
Q 040741          370 L---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR-FTTEAEVDRAIELTVKQVEKLREMSPL  439 (457)
Q Consensus       370 l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~-~~t~edid~~~~~l~~~~~~~~~~~~~  439 (457)
                      +   .||...........      .....|.......+.|||+++. ..|+||||+++++|++++++..+++++
T Consensus       379 ll~~~GI~~~~~~~~~~~------~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i~gl  446 (465)
T d1ax4a_         379 LYLESGVRAVEIGSFLLG------RDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATLKGL  446 (465)
T ss_dssp             HHHHHCEECEEESHHHHC------BCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTCCCE
T ss_pred             HHHhcCceeccccccccc------cccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhccCc
Confidence            1   35443322110000      0001122222334689998654 458999999999999999988877765

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.1e-19  Score=170.80  Aligned_cols=327  Identities=15%  Similarity=0.137  Sum_probs=216.1

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+....-.+.. .+      .....++.+.++++.+.+  .+.|+++|+
T Consensus        38 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~--~v~~~~sGs  108 (404)
T d2byla1          38 VEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA-FY------NNVLGEYEEYITKLFNYH--KVLPMNTGV  108 (404)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT-EE------ESSHHHHHHHHHHHHTCS--EEEEESSHH
T ss_pred             CCCCEEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc-cc------cchHHHHHHhhhhccccc--ccccccCcc
Confidence            455578886553      357899999999998753211111 11      134556777888888764  599999999


Q ss_pred             HHHHHHHHHhhhhhc------CCCCEE-EEcCCCCcchHHHHHHH----HhcC-----cEEEEEeCCCCCCCCHHHHHHh
Q 040741          129 ESNNVSIKGVMHFYK------DKKRHV-ITTQTEHKCVLDSCRHL----QQEG-----FEITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~~------~~g~~v-i~~~~~h~~~~~~~~~~----~~~G-----~~v~~v~~~~~~~~d~~~le~~  192 (457)
                      +|++.|++....+..      ..+..+ ......|.....+....    ...+     ..+..+|.+     |+++++++
T Consensus       109 eA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~-----d~~~l~~~  183 (404)
T d2byla1         109 EAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERA  183 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTEEEECTT-----CHHHHHHH
T ss_pred             ccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCeeEeccc-----CHHHHHHh
Confidence            999999998764421      122344 45555565555443321    1112     124455544     89999999


Q ss_pred             cCC-CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccCCC--CcccEEEecccc-ccC
Q 040741          193 IRP-DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDVEK--WNVSLMSLSGHK-IYG  261 (457)
Q Consensus       193 i~~-~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~~~--~~~Di~~~s~~K-~~g  261 (457)
                      +.+ +...|+++.+....|.+.|    +++|.++|++||+++|+|+++. +|..  .+....  ..+|+++++  | +.|
T Consensus       184 l~~~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~g--K~l~g  261 (404)
T d2byla1         184 LQDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLG--KALSG  261 (404)
T ss_dssp             HTSTTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT
T ss_pred             cCCCCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeeccccccccccccchhhhcCCCCCEEEEC--chhhC
Confidence            964 5678889999888898876    9999999999999999999996 3322  112222  247999776  9 433


Q ss_pred             C-CCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCe
Q 040741          262 P-KGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGV  340 (457)
Q Consensus       262 ~-~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  340 (457)
                      . ..+|+++++++..+.+.+...++.       ...++..+++..+.++.+++  +...++.+++.+++.+.|.+ +..-
T Consensus       262 G~~p~~av~~~~~i~~~~~~~~~~~T-------~~gnpl~~aaa~a~L~~i~~--~~l~~~~~~~g~~l~~~l~~-l~~~  331 (404)
T d2byla1         262 GLYPVSAVLCDDDIMLTIKPGEHFST-------YGGNPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMK-LPSD  331 (404)
T ss_dssp             TSSCCEEEEECHHHHTTSCTTSSCCS-------STTCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHT-SCTT
T ss_pred             CCccceeeeechhhhhccCCCCCCcC-------CCcCHHHHHHHHHHHHHHHh--cCchhhhhHhhHHHHHHHHh-hccc
Confidence            2 348999999876666655443221       24567777878888888876  56677788888888888887 3221


Q ss_pred             EEeCCCCCcccceEEEEEccc---cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCC
Q 040741          341 VVNGSMERRYIGNLNLSFAYV---EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTT  415 (457)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t  415 (457)
                       ++.+ ....+.+..+.+...   ....+...+  +|+.+.+.                       ..+.|||.++..+|
T Consensus       332 -~i~~-vRg~Gl~~~i~~~~~~~~~~~~~~~~l~~~Gvl~~~~-----------------------~~~~i~l~PpL~it  386 (404)
T d2byla1         332 -VVTA-VRGKGLLNAIVIKETKDWDAWKVCLRLRDNGLLAKPT-----------------------HGDIIRFAPPLVIK  386 (404)
T ss_dssp             -TEEE-EEEETTEEEEEECCCSSCCHHHHHHHHHHTTEECEEE-----------------------ETTEEEECCCTTCC
T ss_pred             -ccee-eeecccEEEEEEecCCchhHHHHHHHHHhCCeEEecC-----------------------CCCEEEEECCcCCC
Confidence             0110 011244555555432   223455554  57766431                       12689999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 040741          416 EAEVDRAIELTVKQVEK  432 (457)
Q Consensus       416 ~edid~~~~~l~~~~~~  432 (457)
                      ++|||++++++++++++
T Consensus       387 ~~~id~~~~~l~~al~~  403 (404)
T d2byla1         387 EDELRESIEIINKTILS  403 (404)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence            99999999999999864

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=3.6e-20  Score=181.22  Aligned_cols=322  Identities=15%  Similarity=0.088  Sum_probs=200.4

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCc--EEEeCChHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKE--IIFTSGATESN  131 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~--i~~t~g~T~a~  131 (457)
                      |.|..+..+.++.|.+|+.+.....  .    .+.  |.......++|+.+++++.-      .++.  .+.+.+++.+.
T Consensus        36 ~~d~~g~~p~~~~V~~A~~~~~~~~--~----~~~--Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (396)
T d2q7wa1          36 YKDETGKTPVLTSVKKAEQYLLENE--T----TKN--YLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGAL  107 (396)
T ss_dssp             CCCTTSCCCCCHHHHHHHHHHHHHC--C----CCC--CCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHhhCC--C----CCC--CCCCcCCHHHHHHHHHHHHhhcCCcccccceeeeccchHHHHH
Confidence            4444555677899999988876542  1    111  22224566788888877521      1222  45566676666


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHh---cCCCceEEEEeccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAA---IRPDTGLISVMAVN  206 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~---i~~~t~li~i~~~~  206 (457)
                      .+++..+...  ++++.|+++++.|+.+...++.+   |.+++.++..  .++..+..++++.   +.+++++++++++|
T Consensus       108 ~l~~~~l~~~--~~gd~Vlvp~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~  182 (396)
T d2q7wa1         108 RVAADFLAKN--TSVKRVWVSNPSWPNHKSVFNSA---GLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCH  182 (396)
T ss_dssp             HHHHHHHHHH--SCCCEEEEEESCCTHHHHHHHHT---TCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred             HHHHHHHhhc--ccceEEEEecCCCccchHHHHHc---CCeeEecccccccccccccchHHHHHHHhccCcEEEEecCCc
Confidence            5555443321  89999999999999999888777   9999998875  3344566555553   45678899999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCccc---------CCCCcccEEEeccccccCCCC--ceEEEEec
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPVD---------VEKWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~~---------~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      ||||.+.+   +++|+++|++|+++++.|++|..-...-.         .......+++.|++|.++..|  +|++++..
T Consensus       183 NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~  262 (396)
T d2q7wa1         183 NPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVA  262 (396)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGGCCEEEEEEC
T ss_pred             CCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhcccccccccccccccccCCCccccccch
Confidence            99999988   67899999999999999999974322100         001123467778889766554  99999987


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCC-C--eEEe
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLD-G--VVVN  343 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~--~~~~  343 (457)
                      ...+..................+++.....++...+.      ...+.+++..++++++++.+.+.|++ +. .  +..+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~  341 (396)
T d2q7wa1         263 ADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQE-KGANRDFSFI  341 (396)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHH-TTCCSCCTHH
T ss_pred             hHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCCccee
Confidence            6554433221110000011122444444444333331      22345777888888999999999988 32 1  1111


Q ss_pred             CCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          344 GSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      .++    .++  |.+.+.+.+ ....|   .||.+.+|                         +  ||+++.. ++++|+
T Consensus       342 ~~~----~G~--F~~~~l~~e-~~~~L~~e~gV~~~~g-------------------------~--Ri~~a~l-~~~~i~  386 (396)
T d2q7wa1         342 IKQ----NGM--FSFSGLTKE-QVLRLREEFGVYAVAS-------------------------G--RVNVAGM-TPDNMA  386 (396)
T ss_dssp             HHC----CSS--EEECCCCHH-HHHHHHHHHCEECCTT-------------------------C--EEEGGGC-CTTTHH
T ss_pred             cCC----CeE--EEeeCCCHH-HHHHHHHhCCEEECCC-------------------------C--EEEecCC-CHHHHH
Confidence            111    222  122233333 33444   47766543                         2  8888653 468999


Q ss_pred             HHHHHHHHHH
Q 040741          421 RAIELTVKQV  430 (457)
Q Consensus       421 ~~~~~l~~~~  430 (457)
                      +++++|.+++
T Consensus       387 ~~~~ai~~v~  396 (396)
T d2q7wa1         387 PLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.5e-20  Score=184.13  Aligned_cols=326  Identities=14%  Similarity=0.052  Sum_probs=195.9

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCcEEEeCChHHHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKEIIFTSGATESNNV  133 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~~t~g~T~a~~~  133 (457)
                      |.|..+..++.+.|.+|........    .. .+  +|.......++|+.+++++.-      ++++++.+.+++.+...
T Consensus        36 ~~d~~g~~p~~~~V~~A~~~l~~~~----~~-~~--~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~  108 (397)
T d3tata_          36 YYNEDGIIPQLQAVAEAEARLNAQP----HG-AS--LYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGAL  108 (397)
T ss_dssp             CCCTTSSCCCCHHHHHHHHHHTTSC----CS-SB--CCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHH
T ss_pred             CcCCCCCCCCcHHHHHHHHHHHhCc----cc-CC--CCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHH
Confidence            5555566677888888876553321    11 11  122234677888999988742      34567777766654333


Q ss_pred             HHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCC--CCCCHHHHHHhc---CCCceEEEEeccccc
Q 040741          134 SIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGAD--GIVNLDELRAAI---RPDTGLISVMAVNNE  208 (457)
Q Consensus       134 al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~--~~~d~~~le~~i---~~~t~li~i~~~~~~  208 (457)
                      ++..+.....++||.|+++++.|+.+...++.+   |.+++.++...+  +..|.+++.+.+   .+++++++++++|||
T Consensus       109 ~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~---G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NP  185 (397)
T d3tata_         109 KVGADFLKRYFPESGVWVSDPTWENHVAIFAGA---GFEVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPCCHNP  185 (397)
T ss_dssp             HHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTT---TCCCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSSSCSS
T ss_pred             HHHHHHhhhcCCCCcceecccCccccHHHHHHc---CCEEEEEecchhhccccchHHHHHHhhhcccccEEEEecCCCCC
Confidence            333322222289999999999999999988766   999999998633  456777777664   356789999999999


Q ss_pred             cccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCC--ceEEEEecCC
Q 040741          209 IGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKG--VGALYMRRRP  274 (457)
Q Consensus       209 ~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~~~  274 (457)
                      ||.+.+   +++|.++|++|+++++.|++|..-....         .......-+++.|++|.++.+|  +|++++....
T Consensus       186 TG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~~~~~~~  265 (397)
T d3tata_         186 TGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVMCED  265 (397)
T ss_dssp             SCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTTCCBCCEEECSS
T ss_pred             CCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCccccccccchhH
Confidence            999988   6789999999999999999997432210         0111123477889999776555  8999998876


Q ss_pred             CccccccccCCccccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCCC--eEEeCCC
Q 040741          275 RIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLDG--VVVNGSM  346 (457)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~  346 (457)
                      .+..................+++.....++...+.      ...+.++...+++++.++.+.+.|.+..+.  +.+..+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~  345 (397)
T d3tata_         266 AEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQ  345 (397)
T ss_dssp             TTHHHHHHHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHC
T ss_pred             HHHHHHHHHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCC
Confidence            65543221100000001111233333332222221      112234555566666666666666552221  1111111


Q ss_pred             CCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHH
Q 040741          347 ERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAI  423 (457)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~  423 (457)
                          .++ ++++. .+. +....|   .+|.+.+|                           .||+++. .++++||+++
T Consensus       346 ----~G~-F~~~~-ls~-e~~~~L~~e~~V~l~~g---------------------------~Ri~~a~-~~~~~i~~~~  390 (397)
T d3tata_         346 ----RGM-FSYTG-LSA-AQVDRLREEFGVYLIAS---------------------------GRMCVAG-LNTANVQRVA  390 (397)
T ss_dssp             ----CSS-BCCCC-CCH-HHHHHHTTTTCEECCSS---------------------------SCCBTTS-CCTTTHHHHH
T ss_pred             ----Cce-EEecC-cCH-HHHHHHHHhCCEEeCCC---------------------------CEEEecc-CCHHHHHHHH
Confidence                121 11222 222 334444   46766544                           2788765 4578999999


Q ss_pred             HHHHHHH
Q 040741          424 ELTVKQV  430 (457)
Q Consensus       424 ~~l~~~~  430 (457)
                      ++|.+++
T Consensus       391 ~ai~~v~  397 (397)
T d3tata_         391 KAFAAVM  397 (397)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9988763

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.81  E-value=1.4e-17  Score=162.62  Aligned_cols=327  Identities=17%  Similarity=0.210  Sum_probs=202.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+|+.+.+.+..-. .+..+      ......+++.+.++.+.+  .+.|+.+|+
T Consensus        36 ~dG~~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~-~~~~~------~~~~~~~~~~~~~~~~~~--~v~~~~sgs  106 (404)
T d1z7da1          36 VNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC-SRAFF------SVPLGICERYLTNLLGYD--KVLMMNTGA  106 (404)
T ss_dssp             TTCCEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCC-CTTSE------EHHHHHHHHHHHHHHTCS--EEEEESSHH
T ss_pred             CCCCEEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCc-ccccc------hHHHHHHHHhhhhccccc--eeeeecccc
Confidence            345578886542      246899999999988753211 11011      135667888888888864  499999999


Q ss_pred             HHHHHHHHHhhhhhcC------CCCEEEEcC-CCCcchHHHHHHHHhcCc---------EEEEEeCCCCCCCCHHHHHHh
Q 040741          129 ESNNVSIKGVMHFYKD------KKRHVITTQ-TEHKCVLDSCRHLQQEGF---------EITYLPVGADGIVNLDELRAA  192 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~------~g~~vi~~~-~~h~~~~~~~~~~~~~G~---------~v~~v~~~~~~~~d~~~le~~  192 (457)
                      +|+..+++........      ....++... ..|...............         .+..+|.+     +.+.++..
T Consensus       107 ~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~  181 (404)
T d1z7da1         107 EANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEE  181 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECTT-----CHHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccccccccccccccccCCCCcccccccccccccccCCCCCCccccccccc-----hHHHHHHH
Confidence            9999999876643221      112344433 344444333322211111         11222222     67888877


Q ss_pred             cCC-CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhh-cCCC--cccC--CCCcccEEEecccccc-C
Q 040741          193 IRP-DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQA-LGKI--PVDV--EKWNVSLMSLSGHKIY-G  261 (457)
Q Consensus       193 i~~-~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~-~g~~--~~~~--~~~~~Di~~~s~~K~~-g  261 (457)
                      +.+ +...|+++.+....|.+.|    +++|.++|++||+++|+|++++ +|..  .+..  ....+|+++++  |.. |
T Consensus       182 ~~~~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~g--K~l~g  259 (404)
T d1z7da1         182 LKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLG--KALSG  259 (404)
T ss_dssp             HTSTTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEEC--GGGGT
T ss_pred             hcCCCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccccccccccCCCCCEEEEc--ccccC
Confidence            764 5688899999988898877    9999999999999999999995 4322  1111  12357999777  943 3


Q ss_pred             -CCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          262 -PKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       262 -~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                       ...+|+++++++..+.+.+...+..       ...++..+++..+.++.+.++  +++..+....+.+.+.+.+++ .+
T Consensus       260 G~~p~~~v~~~~~i~~~~~~~~~~~T-------~~gnpl~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  331 (404)
T d1z7da1         260 GHYPISAVLANDDIMLVIKPGEHGST-------YGGNPLAASICVEALNVLINEKLCENAEKLGGPFLENLKRELKD-SK  331 (404)
T ss_dssp             TSSCCEEEEECHHHHTTCCTTCCCCT-------TTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTT-CT
T ss_pred             CCCCcccccchHHHHccCCCCCcCcC-------CCCCcchhhhhhhhhhhhhcchhhhhhccchhHHHHHHHHHHhc-CC
Confidence             2348999999887666655443321       144677777777788877663  333333444455555555655 55


Q ss_pred             CeE-EeCCCCCcccceEEEEEccc--cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCC
Q 040741          339 GVV-VNGSMERRYIGNLNLSFAYV--EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRF  413 (457)
Q Consensus       339 ~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~  413 (457)
                      .+. +.+     .+.++.+.+...  ...++...+  +|+.+.+.                       ..+.|||.++..
T Consensus       332 ~v~~vrg-----~Gl~~~i~~~~~~~~~~~~~~~l~~~Gl~~~~~-----------------------~~~~ir~~Ppl~  383 (404)
T d1z7da1         332 IVRDVRG-----KGLLCAIEFKNELVNVLDICLKLKENGLITRDV-----------------------HDKTIRLTPPLC  383 (404)
T ss_dssp             TEEEEEE-----ETTEEEEEECTTTCCHHHHHHHHHHTTEECCEE-----------------------TTTEEEECCCTT
T ss_pred             CeEEEEe-----eCcEEEEEEcCCcccHHHHHHHHHhCCeEEecC-----------------------CCCEEEEECCcC
Confidence            442 222     245556666432  223454444  57765431                       126899999998


Q ss_pred             CCHHHHHHHHHHHHHHHHHH
Q 040741          414 TTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       414 ~t~edid~~~~~l~~~~~~~  433 (457)
                      +|++|||+++++|+++++++
T Consensus       384 it~~~id~~~~~l~~alk~~  403 (404)
T d1z7da1         384 ITKEQLDECTEIIVKTVKFF  403 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999875

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=7.9e-18  Score=165.51  Aligned_cols=334  Identities=13%  Similarity=0.097  Sum_probs=204.7

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccC-CCCCCccchhhhHHHHHHHHHHHHHHHhCCC-CCcEEEeCC
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYG-NPHSRTHLFGWESEVAVETARSQIADLIGAS-PKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~-~~~i~~t~g  126 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+.+..- .+..       ...+...++.+.+.+++..+ .+.++|+++
T Consensus        37 ~dG~~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~~~~~~~-------~~~~~~~~la~~l~~~~p~~~~~~v~f~~s  109 (425)
T d1sffa_          37 VEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQV-------LAYEPYLELCEIMNQKVPGDFAKKTLLVTT  109 (425)
T ss_dssp             TTCCEEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCSCCCTTT-------EECHHHHHHHHHHHHHSSCSSCEEEEEESS
T ss_pred             CCCCEEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcCCccccc-------ccCcHHHHHHHHHHhhhhhcccceeeeecc
Confidence            455568886653      35789999999999875321 1111       11245566778888888643 346999999


Q ss_pred             hHHHHHHHHHHhhhhhcCCCCEEEE-cCCCCcchHHHHHHHHhc-----C-----cEEEEEeCC--CCCCC------CHH
Q 040741          127 ATESNNVSIKGVMHFYKDKKRHVIT-TQTEHKCVLDSCRHLQQE-----G-----FEITYLPVG--ADGIV------NLD  187 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~~~g~~vi~-~~~~h~~~~~~~~~~~~~-----G-----~~v~~v~~~--~~~~~------d~~  187 (457)
                      ||+|++.|++....+. + +.+|+. ....|.....+.......     +     ......+.+  .....      +.+
T Consensus       110 GseA~e~Alk~ar~~t-~-r~~ii~~~~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (425)
T d1sffa_         110 GSEAVENAVKIARAAT-K-RSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIH  187 (425)
T ss_dssp             HHHHHHHHHHHHHHHH-T-CCEEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHH
T ss_pred             ccchhhhHHHHhhhhh-c-ccceEeecCCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHH
Confidence            9999999999877543 3 445555 445566565554332110     0     111112211  11111      011


Q ss_pred             HHHHhc--CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCCc--c--cCCCCcccEEEecc
Q 040741          188 ELRAAI--RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKIP--V--DVEKWNVSLMSLSG  256 (457)
Q Consensus       188 ~le~~i--~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~~--~--~~~~~~~Di~~~s~  256 (457)
                      ++....  ..+...|+++.+....|.+.|    +++|.++|++||+++|+|++++. |...  .  ......+|+++++ 
T Consensus       188 ~~~~~~~~~~~vaavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~g-  266 (425)
T d1sffa_         188 RIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFA-  266 (425)
T ss_dssp             HHHHHTCCGGGEEEEEECSBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEEC-
T ss_pred             HHHHhcccccceEEEEecCccCCCCcccCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecc-
Confidence            111111  234678889999888887765    88999999999999999999974 3221  1  1112357999877 


Q ss_pred             cc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH----H
Q 040741          257 HK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLL----N  331 (457)
Q Consensus       257 ~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~----~  331 (457)
                       | +.|.-.+|+++++++..+.+.+...++.       .+.++..+++..++++.+++  +...++.+.+.++++    +
T Consensus       267 -K~l~gG~P~~av~~~~~i~~~~~~~~~~~T-------~~gnpl~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~l~~  336 (425)
T d1sffa_         267 -KSIAGGFPLAGVTGRAEVMDAVAPGGLGGT-------YAGNPIACVAALEVLKVFEQ--ENLLQKANDLGQKLKDGLLA  336 (425)
T ss_dssp             -GGGGTSSCCEEEEEEHHHHTTSCTTSBCCS-------SSSCHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHH
T ss_pred             -cccCCCcceEEEEEcHHHHHhhCCCCCCCC-------CCcCHHHHHHHHHHHHHHHH--hhhhhhhhhhhhhhhhhhhh
Confidence             9 4433358999999886666554433321       24567777888888988876  333444444444444    4


Q ss_pred             HHhhcCCCeE-EeCCCCCcccceEEEEEccc-----cc----hHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          332 GIKEKLDGVV-VNGSMERRYIGNLNLSFAYV-----EG----ESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       332 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      .+++ .+.+. +.+     .+.++.+.|...     ..    ..+...+  +|+.+.+..                    
T Consensus       337 ~~~~-~~~v~~vrg-----~Gl~~~i~f~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~g--------------------  390 (425)
T d1sffa_         337 IAEK-HPEIGDVRG-----LGAMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCG--------------------  390 (425)
T ss_dssp             HHHT-CTTEEEEEE-----ETTEEEEEEBGGGCTTSBCHHHHHHHHHHHHHTTEECEEES--------------------
T ss_pred             hHhh-CCceEEEEc-----cccEEEEEEeccCccCCccHHHHHHHHHHHHHCCCEEeccC--------------------
Confidence            4444 55432 222     245555655321     11    1233333  577665421                    


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHHh
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLRE  435 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~~  435 (457)
                       ...+.|||+++..+|++|||+++++++++++++++
T Consensus       391 -~~~n~i~~~PpL~it~~eid~~l~~l~~al~eikk  425 (425)
T d1sffa_         391 -PYYNVLRILVPLTIEDAQIRQGLEIISQCFDEAKQ  425 (425)
T ss_dssp             -TTSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             -CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence             11278999999999999999999999999998864

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.80  E-value=8.4e-19  Score=172.22  Aligned_cols=325  Identities=15%  Similarity=0.051  Sum_probs=196.5

Q ss_pred             EecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCC------CCCcEE--EeCChHHHH
Q 040741           60 YLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGA------SPKEII--FTSGATESN  131 (457)
Q Consensus        60 ~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~------~~~~i~--~t~g~T~a~  131 (457)
                      |.|..+..++.+.|.++........ ..    .|.|  .......++|+.+++++.-      .++.++  .+.+++.++
T Consensus        39 ~~d~~g~~~~~~~V~~A~~~l~~~~-~~----~~~Y--~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (412)
T d1yaaa_          39 YRDDNGKPWVLPSVKAAEKLIHNDS-SY----NHEY--LGITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGAL  111 (412)
T ss_dssp             CBCTTSCBCCCHHHHHHHHHHHTCT-TC----CCCC--CCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHH
T ss_pred             CcCCCCCCCCcHHHHHHHHHHHhCc-cc----CCCC--CCCCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHH
Confidence            3444445567788888765543221 11    1212  2224566777888776521      122222  233444444


Q ss_pred             HHHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHhcC---CCceEEEEeccc
Q 040741          132 NVSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAAIR---PDTGLISVMAVN  206 (457)
Q Consensus       132 ~~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~i~---~~t~li~i~~~~  206 (457)
                      ..++....  ..++||.|+++++.|+.+...++..   |.+++.++..  .+...|.+.+++.+.   +.+++++++.+|
T Consensus       112 ~~~~~~~~--~~~~gd~Vlip~P~~~~y~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~  186 (412)
T d1yaaa_         112 HISAKFFS--KFFPDKLVYLSKPTWANHMAIFENQ---GLKTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAH  186 (412)
T ss_dssp             HHHHHHHH--HHCTTCCEEEEESCCTTHHHHHHTT---TCCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred             HHHHHHHh--ccCCCCEEecccccCchhHHHHHHc---CCceecccccccccccccchhhhcccccCCCceEEEEecCCC
Confidence            44432221  1179999999999999999887666   9999998864  445677777777663   567899999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc-------------cCCCCcccEEEeccccccCCCC--ceEE
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV-------------DVEKWNVSLMSLSGHKIYGPKG--VGAL  268 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~-------------~~~~~~~Di~~~s~~K~~g~~G--~G~l  268 (457)
                      ||||.+.+   +++|+++|++++++++.|++|..-...-             .......-+++.|++|.++.+|  +|++
T Consensus       187 NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~~  266 (412)
T d1yaaa_         187 NPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGERVGCF  266 (412)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGGCEEEE
T ss_pred             CCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcCceEEE
Confidence            99999988   7889999999999999999997332210             0111233478889999777555  9999


Q ss_pred             EEecCCCccccccccCC--c--cccccccCCCChhHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHHHHHHhhcCC
Q 040741          269 YMRRRPRIRVEPLINGG--G--QERGIRSGTLPTPLIVGFGSACE------IAKKEMDYDHKRITALHDRLLNGIKEKLD  338 (457)
Q Consensus       269 ~~~~~~~~~~~~~~~~~--~--~~~~~~~~t~~~~~~~al~~al~------~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  338 (457)
                      ++..+............  .  .........++......+..++.      ...+.++...++++++++.+.+.|++ +.
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~g  345 (412)
T d1yaaa_         267 HLALTKQAQNKTIKPAVTSQLAKIIRSEVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVK-LG  345 (412)
T ss_dssp             EEECCSCTTHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred             EEchhhhhhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hC
Confidence            99987665443221100  0  00001112333333333323332      22334677888888888999998887 31


Q ss_pred             C---eEEeCCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCC
Q 040741          339 G---VVVNGSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGR  412 (457)
Q Consensus       339 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~  412 (457)
                      .   +..+.+    ..++  |.+.+.+.+ +.+.|   .+|.+.+|                           .||++..
T Consensus       346 ~~~~~~~~~~----~gG~--F~~~~ls~e-~~~~L~~e~~V~~~~g---------------------------~Ris~~g  391 (412)
T d1yaaa_         346 TPGNWDHIVN----QCGM--FSFTGLTPQ-MVKRLEETHAVYLVAS---------------------------GRASIAG  391 (412)
T ss_dssp             CSSCCTHHHH----CCSS--EEECCCCHH-HHHHHHHHHCEECCTT---------------------------SEEEGGG
T ss_pred             CCCCCceeCC----CceE--EEecCcCHH-HHHHHHHhCCEEECCC---------------------------CEEEecc
Confidence            1   111111    1232  233334333 34444   46665543                           3888764


Q ss_pred             CCCHHHHHHHHHHHHHHHHH
Q 040741          413 FTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       413 ~~t~edid~~~~~l~~~~~~  432 (457)
                       .++++||+++++|.++++.
T Consensus       392 -~~~~~i~~l~~ai~~v~k~  410 (412)
T d1yaaa_         392 -LNQGNVEYVAKAIDEVVRF  410 (412)
T ss_dssp             -CCTTTHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHh
Confidence             3568999999999998874

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=4.4e-19  Score=173.30  Aligned_cols=320  Identities=12%  Similarity=0.053  Sum_probs=192.3

Q ss_pred             EEecCCCCCCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHh----CCC-CCcEEEeCChHHHHH-
Q 040741           59 LYLDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLI----GAS-PKEIIFTSGATESNN-  132 (457)
Q Consensus        59 i~l~~~~~~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~----g~~-~~~i~~t~g~T~a~~-  132 (457)
                      .|.|..+..++++.|.+|+.+......  .+.      |.......++|+++++++    +.. ....+.+.+|+.+.. 
T Consensus        35 ~~~d~~g~~~~~~~V~~A~~~~~~~~~--~~~------Y~p~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l  106 (394)
T d2ay1a_          35 VYKDATGHTPIMRAVHAAEQRMLETET--TKT------YAGLSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQ  106 (394)
T ss_dssp             SCCCTTSCCCCCHHHHHHHHHHHHHCC--CCC------CCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHH
T ss_pred             CccCCCCCCCCCHHHHHHHHHHhhCCC--CCC------CCCCCCCHHHHHHHHHHHhccccccccccceeccCchHHHHH
Confidence            356666677888999999988876421  111      111134556777777765    221 223555566655544 


Q ss_pred             -HHHHHhhhhhcCCCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCC--CCCCCCHHHHHHh---cCCCceEEEEeccc
Q 040741          133 -VSIKGVMHFYKDKKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVG--ADGIVNLDELRAA---IRPDTGLISVMAVN  206 (457)
Q Consensus       133 -~al~~~~~~~~~~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~--~~~~~d~~~le~~---i~~~t~li~i~~~~  206 (457)
                       +.+..+.    ++++.|+++.+.|+.+...++.+   |.+++.++..  .++..+.+++++.   +.+++++++++.+|
T Consensus       107 ~~~~~~~~----~~gd~V~~p~p~~~~y~~~~~~~---g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~  179 (394)
T d2ay1a_         107 ALELARMA----NPDLRVFVSDPTWPNHVSIMNFM---GLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCH  179 (394)
T ss_dssp             HHHHHHHH----CTTCCEEEEESCCHHHHHHHHHH---TCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSC
T ss_pred             HHHHhhhc----CCceEEEEecccccchHHHHHHc---CCEEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCC
Confidence             4344444    89999999999999999988888   9999988875  3344555555443   45678899999999


Q ss_pred             cccccccC---hHHHHHHHHhcCCcEEEehhhhcCCCcc---------cCCCCcccEEEeccccccCCCC--ceEEEEec
Q 040741          207 NEIGVIQP---MEEIGQICKEFKIPFHTDAAQALGKIPV---------DVEKWNVSLMSLSGHKIYGPKG--VGALYMRR  272 (457)
Q Consensus       207 ~~~G~~~~---l~~i~~l~~~~~v~li~D~a~~~g~~~~---------~~~~~~~Di~~~s~~K~~g~~G--~G~l~~~~  272 (457)
                      ||||.+.+   +++|+++|++|+++++.|++|..-....         .......-+++.|++|.++..|  +|++.+..
T Consensus       180 NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~  259 (394)
T d2ay1a_         180 NPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALC  259 (394)
T ss_dssp             TTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEEC
T ss_pred             CCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccchhhhhhhhhcccccccccccccccCCcccccchhhch
Confidence            99999988   7789999999999999999997432210         0001112355667888655433  89999987


Q ss_pred             CCCccccccccCCccccccccCCCChhHHHHHHHHH------HHHHHhhHHHHHHHHHHHHHHHHHHhhcCCC---eEEe
Q 040741          273 RPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSAC------EIAKKEMDYDHKRITALHDRLLNGIKEKLDG---VVVN  343 (457)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al------~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~  343 (457)
                      .......................++......+...+      +...+.++...+++.++++.+.+.|++ +.+   +...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~-~~~~~~~~~~  338 (394)
T d2ay1a_         260 ADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRD-LSGSDRFGFV  338 (394)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTSSTTTHH
T ss_pred             hHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCceeeE
Confidence            655433221110000000011122222222221111      112234667777888888888888876 321   1111


Q ss_pred             CCCCCcccceEEEEEccccchHHHhcc---cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHH
Q 040741          344 GSMERRYIGNLNLSFAYVEGESLLMGL---KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVD  420 (457)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid  420 (457)
                      .+.    .++ +. +-+.+. +..+.|   .+|.+.+|                           .||+++. .++++|+
T Consensus       339 ~~~----~G~-F~-~~~ls~-~~~~~L~~~~~V~~~~g---------------------------~Ri~~a~-l~~~~i~  383 (394)
T d2ay1a_         339 AEH----RGM-FS-RLGATP-EQVKRIKEEFGIYMVGD---------------------------SRINIAG-LNDNTIP  383 (394)
T ss_dssp             HHC----CSS-EE-ECCCCH-HHHHHHHHHHCEECCTT---------------------------CEEEGGG-CCTTTHH
T ss_pred             CCC----cee-EE-ecCcCH-HHHHHHHHhCCEEecCC---------------------------CEEEecC-CCHHHHH
Confidence            111    222 12 222333 333444   47776643                           3898865 4568999


Q ss_pred             HHHHHHHHH
Q 040741          421 RAIELTVKQ  429 (457)
Q Consensus       421 ~~~~~l~~~  429 (457)
                      +++++|.++
T Consensus       384 ~l~~ai~~v  392 (394)
T d2ay1a_         384 ILARAIIEV  392 (394)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988875

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.78  E-value=4.9e-17  Score=157.68  Aligned_cols=335  Identities=14%  Similarity=0.141  Sum_probs=221.3

Q ss_pred             EecCCCCC-CCCHHHHHHHHH---HHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHH
Q 040741           60 YLDMQATT-PVDPRVLDAMLP---FYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSI  135 (457)
Q Consensus        60 ~l~~~~~~-~~~~~v~~a~~~---~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al  135 (457)
                      ++..++.+ ..|+.+ +.+..   +++.+  .|.  ......+..+.+-+++++|+++.|.+..+...-.|+|.....++
T Consensus        68 fig~G~~~~~~p~~i-~~~~~~~~~~t~y--tPy--qpE~sQG~Lq~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~  142 (437)
T d1wyua1          68 FLGGGVRSHHVPPVV-QALAARGEFLTAY--TPY--QPEVSQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVL  142 (437)
T ss_dssp             CCCSSCCCCCCCHHH-HHHHTSHHHHHCC--SCC--SGGGCHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHH
T ss_pred             ccCcccCCceeCHHH-HHHHhChhhhhhC--CCc--chHHHHHHHHHHHHHHHHHHHhhCCCccccCchHHHHHHHHHHH
Confidence            55555556 555544 55543   33332  122  22234456688899999999999998766677777777776666


Q ss_pred             HHhhhhhcCCCCEEEEcCCCCcchHHHHH-HHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccccC
Q 040741          136 KGVMHFYKDKKRHVITTQTEHKCVLDSCR-HLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVIQP  214 (457)
Q Consensus       136 ~~~~~~~~~~g~~vi~~~~~h~~~~~~~~-~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~~~  214 (457)
                      .+...   .+++.++++...|+....... ++...|++++.++.+.++.. .++    +++++..|++..|++ .|.+.+
T Consensus       143 ~~~~~---~~~~~~~v~~~~~p~~~~v~~t~a~~~g~~vv~v~~~~~~~~-~~~----~~~~~Aavmi~~Pnt-~G~~ed  213 (437)
T d1wyua1         143 LALRE---TGRMGVLVSQGVHPEYRAVLRAYLEAVGAKLLTLPLEGGRTP-LPE----VGEEVGAVVVQNPNF-LGALED  213 (437)
T ss_dssp             HHHHH---HTCCEEEEETTSCHHHHHHHHHHHHHTTCEEEEECCBTTBCC-CCC----CCTTEEEEEEESSCT-TSBCCC
T ss_pred             HHHhh---hcccccccccccChHHhhhhhhhcccceeeEEeeecccccch-hhh----hccceeEEEEccccc-cccccc
Confidence            55443   456788999999998877654 34667999999998754433 222    678999999999955 799999


Q ss_pred             hHHHHHHHHhcCCcEEEehhhhcCCCcccCCCCcccEEEeccccc-----cCCCCceEEEEecCCCccccccccCC----
Q 040741          215 MEEIGQICKEFKIPFHTDAAQALGKIPVDVEKWNVSLMSLSGHKI-----YGPKGVGALYMRRRPRIRVEPLINGG----  285 (457)
Q Consensus       215 l~~i~~l~~~~~v~li~D~a~~~g~~~~~~~~~~~Di~~~s~~K~-----~g~~G~G~l~~~~~~~~~~~~~~~~~----  285 (457)
                      +++|.+++++.|.+++.|+....-.......++|+|+++++.+++     ||.+|.|++.+++++...+.....|.    
T Consensus       214 ~~~i~~~~h~~G~l~~~~ad~~al~~l~~Pg~~GaDi~~g~~q~fg~p~g~GGP~~G~~a~~~~l~r~lPgrivg~s~d~  293 (437)
T d1wyua1         214 LGPFAEAAHGAGALFVAVADPLSLGVLKPPGAYGADIAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDV  293 (437)
T ss_dssp             HHHHHHHHHHTTCEEEEECCTTGGGTBCCHHHHTCSEEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBT
T ss_pred             hHHHHHHhhhccceEEeeechhhhhccccccccccceEeeccceeccccCCCcCccccccccchhhcccccccccccccc
Confidence            999999999999998888765432222345567899999995554     45566899999987665554333221    


Q ss_pred             --c-----------cccccccCCCCh-----hH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCC
Q 040741          286 --G-----------QERGIRSGTLPT-----PL-IVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSM  346 (457)
Q Consensus       286 --~-----------~~~~~~~~t~~~-----~~-~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  346 (457)
                        .           +.-+...++.+.     .. ..+......+..++++++.++...+++|+.+.|.+ ++++.++.+ 
T Consensus       294 ~G~~~~~l~lqtreqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~-~~g~~~~~~-  371 (437)
T d1wyua1         294 EGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLE-VPGVRPFTP-  371 (437)
T ss_dssp             TSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-STTCEECSC-
T ss_pred             CCcccceeecccccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhh-cCCeeccCC-
Confidence              0           000011122222     12 12222222333457999999999999999999999 889887643 


Q ss_pred             CCcccceEEEEEccccchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHH
Q 040741          347 ERRYIGNLNLSFAYVEGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIE  424 (457)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~  424 (457)
                       ..+..-+.+.+. .+..++...|  +|+..  |..                +.+...++.+.|++....|+||||++++
T Consensus       372 -~~~f~ef~v~~~-~~~~~i~k~L~d~G~~~--~~~----------------~~~~~~~~~lli~~TE~~tkeeiD~~v~  431 (437)
T d1wyua1         372 -KPFFNEFALALP-KDPEAVRRALAERGFHG--ATP----------------VPREYGENLALFAATELHEEEDLLALRE  431 (437)
T ss_dssp             -SSBCSEEEEECS-SCHHHHHHHHHHTTCCC--CEE----------------CCTTSCSSEEEEECCTTCCHHHHHHHHH
T ss_pred             -CCeeeEEEEECC-CCHHHHHHHHHhCCCCC--Ccc----------------cccCCCCCeEEEecCCCCCHHHHHHHHH
Confidence             222333333433 4566777776  45422  110                0122334789999999999999999999


Q ss_pred             HHHHHH
Q 040741          425 LTVKQV  430 (457)
Q Consensus       425 ~l~~~~  430 (457)
                      +|++++
T Consensus       432 al~eil  437 (437)
T d1wyua1         432 ALKEVL  437 (437)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            999863

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=99.77  E-value=7.1e-17  Score=158.55  Aligned_cols=322  Identities=15%  Similarity=0.112  Sum_probs=193.6

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +...|++.+|+.+.+.+....  .     ...  .....+.+.+.++.+. .+.+.|+++|+
T Consensus        49 ~~G~~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~~~--~-----~~~--~~~~~la~~~~~~~~~-~~~v~f~~sGs  118 (427)
T d2gsaa_          49 VDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKGTSF--G-----APC--ALENVLAEMVNDAVPS-IEMVRFVNSGT  118 (427)
T ss_dssp             TTSCEEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCSCC--S-----SCC--HHHHHHHHHHHHHSTT-CSEEEEESSHH
T ss_pred             CCCCEEEEechhHHHHhccCCcHHHHHHHHHHHHhcCcc--c-----cch--hHHHHHHHHHHhhCCc-cccccccCCcH
Confidence            455668887554      246899999999998653211  1     111  2344566777777663 35699999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEEEcC-CCCcchHHHHHH----HHhcCc------------EEEEEeCCCCCCCCHHHHHH
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVITTQ-TEHKCVLDSCRH----LQQEGF------------EITYLPVGADGIVNLDELRA  191 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi~~~-~~h~~~~~~~~~----~~~~G~------------~v~~v~~~~~~~~d~~~le~  191 (457)
                      +|++.|++....+.  .++.|+... ..|.....+...    ....+.            +...++     ..|++++++
T Consensus       119 eA~e~Alk~ar~~t--~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~~~le~  191 (427)
T d2gsaa_         119 EACMAVLRLMRAYT--GRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTP-----YNDLEAVKA  191 (427)
T ss_dssp             HHHHHHHHHHHHHH--CCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEEC-----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccC-----cchHHHHHH
Confidence            99999999877542  345565544 455443222100    001111            222222     238999999


Q ss_pred             hcCC---CceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhcCCCc--c--cCCCCcccEEEecccc-c
Q 040741          192 AIRP---DTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQALGKIP--V--DVEKWNVSLMSLSGHK-I  259 (457)
Q Consensus       192 ~i~~---~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~g~~~--~--~~~~~~~Di~~~s~~K-~  259 (457)
                      ++++   +...|+++.+....|.+.|    +++|.++|++||+++|+|++++.....  .  ......+|+++++  | +
T Consensus       192 ~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~r~g~~~~~~~~gi~PDi~~~g--K~l  269 (427)
T d2gsaa_         192 LFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGFRIAYGGVQEKFGVTPDLTTLG--KII  269 (427)
T ss_dssp             HHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTCHHHHTTCCCSEEEEC--GGG
T ss_pred             HHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccceecccchHHhcCCCHHHHhhh--hcc
Confidence            9974   5678899999888898887    999999999999999999999742111  1  1112357999888  8 4


Q ss_pred             cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH----hh
Q 040741          260 YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNGI----KE  335 (457)
Q Consensus       260 ~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l----~~  335 (457)
                      .|...+|+++++++..+.+.+...   ... ......++..+++..++++.+++  +...++.+++.+++++.|    ++
T Consensus       270 ggG~p~~a~~~~~~i~~~~~~~~~---~~~-~~T~~gnpla~AAala~Le~i~~--~~l~~~~~~~g~~l~~~L~~l~~~  343 (427)
T d2gsaa_         270 GGGLPVGAYGGKREIMQLVAPAGP---MYQ-AGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQE  343 (427)
T ss_dssp             GTTSCCEEEEECHHHHTTBTTTSS---BCC-CCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceeeeeehHHHHHHhcccCC---CcC-CCCCCCCchhhHHHHHhhHHhhh--hhHHhhhhHHHHHHHHHHHHHHhh
Confidence            333336888888876655543211   000 01125567777777788888766  334455555555555544    33


Q ss_pred             cCCCe-EEeCCCCCcccceEEEEEcc--cc--------chH----HHhcc--cCeEecccCccCCCCCChhHHHHHcCCC
Q 040741          336 KLDGV-VVNGSMERRYIGNLNLSFAY--VE--------GES----LLMGL--KEVAVSSGSACTSASLEPSYVLRALGVD  398 (457)
Q Consensus       336 ~~~~~-~~~~~~~~~~~~~~~~~~~~--~~--------~~~----~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~  398 (457)
                       .+.. .+.+     ..+++.+.+..  +.        ...    +...+  +||.+.++.                   
T Consensus       344 -~~~~~~v~~-----~ggm~~i~~~~~~v~~~~~~~~~d~~~~~~~~~~ll~~Gv~l~p~~-------------------  398 (427)
T d2gsaa_         344 -TGHAACGGQ-----VSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQ-------------------  398 (427)
T ss_dssp             -TTCCCEEEE-----ETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHHTTEECCSST-------------------
T ss_pred             -cCCCcEEcc-----cCCeEEEEEeccCCCCHHHhhcccHHHHHHHHHHHHHCCEEECCCC-------------------
Confidence             3321 2211     13343444311  11        111    11222  566655432                   


Q ss_pred             ccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          399 EDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       399 ~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                            ..++-++..+|++|||++++++++++++
T Consensus       399 ------~~~~~~~l~~Te~dId~~l~al~~al~~  426 (427)
T d2gsaa_         399 ------FEAGFTSLAHTEEDIDATLAAARTVMSA  426 (427)
T ss_dssp             ------TSCEECCTTCCHHHHHHHHHHHHHHHTC
T ss_pred             ------CcceeCCCCCCHHHHHHHHHHHHHHHHh
Confidence                  1122356678999999999999999875

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.2e-16  Score=156.66  Aligned_cols=336  Identities=10%  Similarity=0.051  Sum_probs=206.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc-CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCCh
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY-GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGA  127 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~  127 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+.... ..+..      +. .+...++.+++.+..+...+.+.|+++|
T Consensus        40 ~dG~~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~~------~~-~~~~~~l~~~l~~~~~~~~~~v~f~~sG  112 (429)
T d1s0aa_          40 SDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG------IT-HAPAIELCRKLVAMTPQPLECVFLADSG  112 (429)
T ss_dssp             TTSCEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSS------EE-CHHHHHHHHHHHHHSCTTCCEEEEESSH
T ss_pred             CCCCEEEECcccHHHHhhcCCcHHHHHHHHHHHHhcCCcccCC------cc-chHHHHHHHHHHhhhccCcceeeecccc
Confidence            345568886543      2468999999999887632 11111      11 1345666777888877666679999999


Q ss_pred             HHHHHHHHHHhhhhhc---CCCCEEEEc-CCCCcchHHHHHHHHhc----------CcEEEEEeCC---CCCC---CCHH
Q 040741          128 TESNNVSIKGVMHFYK---DKKRHVITT-QTEHKCVLDSCRHLQQE----------GFEITYLPVG---ADGI---VNLD  187 (457)
Q Consensus       128 T~a~~~al~~~~~~~~---~~g~~vi~~-~~~h~~~~~~~~~~~~~----------G~~v~~v~~~---~~~~---~d~~  187 (457)
                      ++|++.+++....+..   ..+..|+.. ...|.....+.......          .......+..   ....   .+++
T Consensus       113 seA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (429)
T d1s0aa_         113 SVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMV  192 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGH
T ss_pred             ccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhh
Confidence            9999999998775542   223455554 44566665543332100          0112222221   1112   2344


Q ss_pred             HHHHhc---CCCceEEEEeccc-cccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCCc--cc--CCCCcccEEEe
Q 040741          188 ELRAAI---RPDTGLISVMAVN-NEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKIP--VD--VEKWNVSLMSL  254 (457)
Q Consensus       188 ~le~~i---~~~t~li~i~~~~-~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~~--~~--~~~~~~Di~~~  254 (457)
                      ++++.+   .++...|+++.+. +..|...|    +++|.++|++||+++|+|+++.. |...  ..  .....+|++++
T Consensus       193 ~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~  272 (429)
T d1s0aa_         193 GFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCL  272 (429)
T ss_dssp             HHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEE
T ss_pred             hhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceeccccccc
Confidence            444433   3567888888775 44455443    89999999999999999999973 3221  11  11235799988


Q ss_pred             cccc-c-cCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040741          255 SGHK-I-YGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKEMDYDHKRITALHDRLLNG  332 (457)
Q Consensus       255 s~~K-~-~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~  332 (457)
                      +  | + .|...+|+++++++..+.+.+...+. ... ......++..+++..+.++.+++  +...++.+++.+++++.
T Consensus       273 g--K~l~gG~~p~~av~~~~~i~~~~~~~~~~~-~~~-~~T~~gnp~~~aaa~a~L~~i~~--~~~~~~~~~~g~~l~~~  346 (429)
T d1s0aa_         273 G--KALTGGTMTLSATLTTREVAETISNGEAGC-FMH-GPTFMGNPLACAAANASLAILES--GDWQQQVADIEVQLREQ  346 (429)
T ss_dssp             C--GGGGTSSSCCEEEEECHHHHHHHHTSTTSS-CSC-CCTTTTCHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHH
T ss_pred             c--cccccccccccchhhHHHHHhccCCCCCcc-eee-cCCCCCCcccchhhhcccccccc--ccccchhhHHHHHHHHH
Confidence            8  8 4 33345899999986554433211110 000 01124566777777788888766  56777888888888888


Q ss_pred             Hhhc--CCCeE-EeCCCCCcccceEEEEEccc-cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeE
Q 040741          333 IKEK--LDGVV-VNGSMERRYIGNLNLSFAYV-EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSI  406 (457)
Q Consensus       333 l~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~i  406 (457)
                      |++.  .+.+. +.     ..+.+..+.+... ....+...+  +|+.+.+.                        ++.|
T Consensus       347 L~~l~~~~~v~~vr-----g~Gl~~~~e~~~~~~~~~~~~~~~~~Gl~~~~~------------------------g~~i  397 (429)
T d1s0aa_         347 LAPARDAEMVADVR-----VLGAIGVVETTHPVNMAALQKFFVEQGVWIRPF------------------------GKLI  397 (429)
T ss_dssp             HGGGGGCTTEEEEE-----EETTEEEEEESSCBCHHHHHHHHHHTTEECCCB------------------------TTEE
T ss_pred             HHHhccCCceEEEe-----ecccEEEEEecCcccHHHHHHHHHHCCcEEEec------------------------CCEE
Confidence            8651  23222 21     2245555666433 233444444  57665432                        2689


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          407 RFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       407 Ri~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      ||.++..+|++|||+++++|++++++
T Consensus       398 ~~~Ppl~it~~eid~~~~~l~~al~e  423 (429)
T d1s0aa_         398 YLMPPYIILPQQLQRLTAAVNRAVQD  423 (429)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHTSS
T ss_pred             EEeCCcCCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998764

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=99.73  E-value=2.3e-15  Score=148.07  Aligned_cols=338  Identities=14%  Similarity=0.094  Sum_probs=195.4

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhccCCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChH
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRYGNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSGAT  128 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T  128 (457)
                      ..+.-|||+.+.      +..+|++.+|+.+.+.+.. ...+     +.. .+...++.++|.++..-..+.+.|+++||
T Consensus        38 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~-~~~~~~la~~L~~~~~~~~~~v~f~~sGs  110 (431)
T d1zoda1          38 ADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD-HLFS-----EML-SRPVVDLATRLANITPPGLDRALLLSTGA  110 (431)
T ss_dssp             TTCCEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCT-----TCC-CHHHHHHHHHHHHHSCTTCCEEEEESCHH
T ss_pred             CCCCEEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcc-cccc-----ccc-cHHHHHHHHHHHHhCCcccceeeeccccc
Confidence            345568887542      2567999999999997642 1111     011 13445677788888754456799999999


Q ss_pred             HHHHHHHHHhhhhhcCCCCEEE-EcCCCCcchHHHHHHHHhcC--------cEEEEEeCCCCC---------CCCHHH--
Q 040741          129 ESNNVSIKGVMHFYKDKKRHVI-TTQTEHKCVLDSCRHLQQEG--------FEITYLPVGADG---------IVNLDE--  188 (457)
Q Consensus       129 ~a~~~al~~~~~~~~~~g~~vi-~~~~~h~~~~~~~~~~~~~G--------~~v~~v~~~~~~---------~~d~~~--  188 (457)
                      +|++.|++....+. + +++|+ .....|.....+.......+        .....++.....         ..+.++  
T Consensus       111 eA~e~Alk~Ar~~t-~-r~~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (431)
T d1zoda1         111 ESNEAAIRMAKLVT-G-KYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELD  188 (431)
T ss_dssp             HHHHHHHHHHHHHH-T-CCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHH
T ss_pred             chHHHHHHHHHHhc-C-CcceeecccccccccchhhcccccccccccCCcccCceeeeeecccccccccccchhhhhhHH
Confidence            99999999776542 3 44554 45556666554432211100        122233222111         112223  


Q ss_pred             -HHHhc----CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcEEEehhhhc-CCCc--ccC--CCCcccEEEe
Q 040741          189 -LRAAI----RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPFHTDAAQAL-GKIP--VDV--EKWNVSLMSL  254 (457)
Q Consensus       189 -le~~i----~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~li~D~a~~~-g~~~--~~~--~~~~~Di~~~  254 (457)
                       ++..+    ..+...|+++.+....|.+.|    +++|.++|++||+++|.|+++.. |...  +..  ....+|++++
T Consensus       189 ~~~~~~~~~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~  268 (431)
T d1zoda1         189 YAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTL  268 (431)
T ss_dssp             HHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEE
T ss_pred             HHHHHHHHhccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhcc
Confidence             22222    356788999999888888766    99999999999999999999984 4332  111  1224799988


Q ss_pred             cccc-ccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHH
Q 040741          255 SGHK-IYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIVGFGSACEIAKKE--MDYDHKRITALHDRLLN  331 (457)
Q Consensus       255 s~~K-~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~~~~~--~~~~~~~~~~~~~~l~~  331 (457)
                      +  | +.|...++.++++++............     ....+.++..+++..+.++.++++  +++..+.-+.+.+.+.+
T Consensus       269 g--K~l~gG~p~~av~~~~~~~~~~~~~~~~~-----~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~  341 (431)
T d1zoda1         269 S--KTLGAGLPLAAIVTSAAIEERAHELGYLF-----YTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLD  341 (431)
T ss_dssp             C--HHHHTTSSCEEEEECHHHHHHHHHTTCCC-----CCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred             c--cccccccccceeeeeecchhhhhcccccc-----cCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhh
Confidence            8  9 444333677777765433322111100     111255666777777788877663  33333333334444444


Q ss_pred             HHhhcCCCeE-EeCCCCCcccceEEEEEcc--c--c-----chHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCc
Q 040741          332 GIKEKLDGVV-VNGSMERRYIGNLNLSFAY--V--E-----GESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDE  399 (457)
Q Consensus       332 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~--~-----~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~  399 (457)
                      .+.+ .+.+. +.+     .+.++.+.|..  .  +     ...+...+  +|+....  .                 ..
T Consensus       342 ~~~~-~~~i~~vrG-----~Glm~~ie~~~~~~~~~~~~~~~~~i~~~~~~~Gl~~~~--~-----------------~~  396 (431)
T d1zoda1         342 LMER-FDCIGDVRG-----RGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNI--V-----------------QL  396 (431)
T ss_dssp             HHHH-CTTEEEEEE-----ETTEEEEEEEEETTTTEECTTHHHHHHHHHHHTTEECCE--E-----------------CC
T ss_pred             hhhc-CCCeEEEee-----cceEEEEEEecCCcccCccHHHHHHHHHHHHHhCcccCe--e-----------------ee
Confidence            4455 44332 222     24444444421  0  0     12233333  3433210  0                 00


Q ss_pred             cCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHH
Q 040741          400 DMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKL  433 (457)
Q Consensus       400 ~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~  433 (457)
                      ...++.|||+++..+|++|||.+++++++++++.
T Consensus       397 ~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~~v  430 (431)
T d1zoda1         397 PGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIERA  430 (431)
T ss_dssp             TTSCCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence            1123789999999999999999999999999874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.69  E-value=7.7e-15  Score=143.93  Aligned_cols=338  Identities=13%  Similarity=0.119  Sum_probs=216.8

Q ss_pred             CCCHHHHHHHHHHHhhccCCCCCCcc-chhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCChHHHHHHHHHHhhhhhcC--
Q 040741           68 PVDPRVLDAMLPFYLSRYGNPHSRTH-LFGWESEVAVETARSQIADLIGASPKEIIFTSGATESNNVSIKGVMHFYKD--  144 (457)
Q Consensus        68 ~~~~~v~~a~~~~~~~~~~~p~~~~~-~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g~T~a~~~al~~~~~~~~~--  144 (457)
                      ...|.+.+.+.++++.+  .|.  .. ....+..+.+-+++.++++++|.+-.+.-.-.|+|.+-+.++++......+  
T Consensus        76 hy~P~v~~~~~~~~TaY--TPY--QPaEiSQG~LQalfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~~~~~~  151 (471)
T d1wyub1          76 KYNPKLHEEAARLFADL--HPY--QDPRTAQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGE  151 (471)
T ss_dssp             CCCCHHHHHHHHTTSSC--CTT--SCGGGCHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcchhhhHHHHHhcc--CCC--CCHHHHHHHHHHHHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHhhhccc
Confidence            56678888887655432  233  22 334566689999999999999998655666677776655555544321111  


Q ss_pred             -CCCEEEEcCCCCcchHHHHHHHHhcCcEEEEEeCCCCCCCCHHHHHHhcCCCceEEEEeccccccccc-cChHHHHHHH
Q 040741          145 -KKRHVITTQTEHKCVLDSCRHLQQEGFEITYLPVGADGIVNLDELRAAIRPDTGLISVMAVNNEIGVI-QPMEEIGQIC  222 (457)
Q Consensus       145 -~g~~vi~~~~~h~~~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~le~~i~~~t~li~i~~~~~~~G~~-~~l~~i~~l~  222 (457)
                       ....+++....|.......  ....+..++.++.+..+..|.+.++....+++..+++..+++. |.+ ...+++.+++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~v~v~~p~~~-g~~e~~~~~~~~~~  228 (471)
T d1wyub1         152 GRTRRVVLVPDSAHGSNPAT--ASMAGYQVREIPSGPEGEVDLEALKRELGPHVAALMLTNPNTL-GLFERRILEISRLC  228 (471)
T ss_dssp             TTTCCEEEEETTSCTHHHHH--HHHTTCEEEEECBCTTSSBCHHHHHHHCSTTEEEEEECSSCTT-SCCCTTHHHHHHHH
T ss_pred             ccccccccCCcccccceeee--eecccceeecccccccccccchhhhhhhhccccceeeccCCCc-ccccchhhhhHHHH
Confidence             1223344444444444332  2334788888888888889999999999999999999988764 555 4589999999


Q ss_pred             HhcCCcEEEehhhhcCCC-cccCCCCcccEEEeccccc------cCCCCceEEEEecCCCccccccccCCc---------
Q 040741          223 KEFKIPFHTDAAQALGKI-PVDVEKWNVSLMSLSGHKI------YGPKGVGALYMRRRPRIRVEPLINGGG---------  286 (457)
Q Consensus       223 ~~~~v~li~D~a~~~g~~-~~~~~~~~~Di~~~s~~K~------~g~~G~G~l~~~~~~~~~~~~~~~~~~---------  286 (457)
                      ++.+..+++|.+...... .......+.|++++..++.      ||++|+|++.+++++...+.-..-+.+         
T Consensus       229 h~~g~~~~~~~~~~~~~~~l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~  308 (471)
T d1wyub1         229 KEAGVQLYYDGANLNAIMGWARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFD  308 (471)
T ss_dssp             HHHTCEEEEEGGGGGGTTTTCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECC
T ss_pred             HhccccccccccchhhhhhccccCcccccccccccccccccccccccccccceeehhhhhccCCCceecCCCccccccCC
Confidence            999999999987643322 2223345678888887884      345669999999876655542222111         


Q ss_pred             --cc-cccccCCCChh-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCCeEEeCCCCCcccceEEEEEc-cc
Q 040741          287 --QE-RGIRSGTLPTP-LIVGFGSACEIAKKEMDYDHKRITALHDRLLNGIKEKLDGVVVNGSMERRYIGNLNLSFA-YV  361 (457)
Q Consensus       287 --~~-~~~~~~t~~~~-~~~al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  361 (457)
                        ++ ++....+.... .+.+.....-+..+++.++.+++.+++.|+.+.|+.  +|+.+..+  ..+..-+.+.++ ++
T Consensus       309 REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~--~G~~~~~~--~~ff~EFvv~~~~~~  384 (471)
T d1wyub1         309 RPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE--KGYRVPYD--GPSMHEFVAQPPEGF  384 (471)
T ss_dssp             CTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCBCSSC--SSCCSCEEEBCSTTC
T ss_pred             CcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh--cCceeccC--cceeeEEeecCCCCC
Confidence              11 11122222222 222222222233467999999999999999999977  78877532  222233333333 24


Q ss_pred             cchHHHhcc--cCeEecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHHHH
Q 040741          362 EGESLLMGL--KEVAVSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEKLR  434 (457)
Q Consensus       362 ~~~~~~~~l--~~i~~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~~~  434 (457)
                      +..++...|  +|+.-  +..                ..+...++.+-|+++..+|++|||+++++|++++++.+
T Consensus       385 ~~~~i~k~L~~~G~~~--~~~----------------~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~  441 (471)
T d1wyub1         385 RALDLAKGLLELGFHP--PTV----------------YFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPK  441 (471)
T ss_dssp             CHHHHHHHHHHTTCCC--CEE----------------SCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred             CHHHHHHHHHHcCCCC--Ccc----------------cCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence            455666666  45422  110                11233457888999999999999999999999998654

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.67  E-value=3.7e-15  Score=147.44  Aligned_cols=331  Identities=15%  Similarity=0.124  Sum_probs=191.9

Q ss_pred             CCCcEEecCCCC------CCCCHHHHHHHHHHHhhcc--CCCCCCccchhhhHHHHHHHHHHHHHHHhCCCCCcEEEeCC
Q 040741           55 AGRPLYLDMQAT------TPVDPRVLDAMLPFYLSRY--GNPHSRTHLFGWESEVAVETARSQIADLIGASPKEIIFTSG  126 (457)
Q Consensus        55 ~~~~i~l~~~~~------~~~~~~v~~a~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~i~~t~g  126 (457)
                      ..+.-|||+.+.      +..+|++.+++.+.+....  ..+.....    ......+++.+.+.+..+.+.+.++|+++
T Consensus        50 ~dG~~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~~~~~~~----~~~~~a~~lae~l~~~~~~~~~~v~f~~s  125 (461)
T d1ohwa_          50 VDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGIL----PPENFVEKLRESLLSVAPKGMSQLITMAC  125 (461)
T ss_dssp             TTSCEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCCTTTS----CBTTHHHHHHHTGGGGCCTTCCEEEEESS
T ss_pred             CCCCEEEEcccCHHHHhhcCCcHHHHHHHHHHHhhhhhccccccccc----chHHHHHHHHHHHHhhhccCcceeeeecc
Confidence            455568886432      3578999999988765321  11111000    11123455666666666655667999999


Q ss_pred             hHHHHHHHHHHhhhhhc------------------------CCCCEEEEc-CCCCcchHHHHHHHHh-----c---CcEE
Q 040741          127 ATESNNVSIKGVMHFYK------------------------DKKRHVITT-QTEHKCVLDSCRHLQQ-----E---GFEI  173 (457)
Q Consensus       127 ~T~a~~~al~~~~~~~~------------------------~~g~~vi~~-~~~h~~~~~~~~~~~~-----~---G~~v  173 (457)
                      |++|++.|++....++.                        .++..||.. ...|.....+......     .   ....
T Consensus       126 GseAve~Aik~Ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~  205 (461)
T d1ohwa_         126 GSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDW  205 (461)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCC
T ss_pred             hhhhhHHHHHHHHHHhhhcccCcccccchhhhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCC
Confidence            99999999997764432                        123456654 4456655554432200     0   0111


Q ss_pred             EEEeCCCC-C-------------CCCHHHHHHhc------CCCceEEEEeccccccccccC----hHHHHHHHHhcCCcE
Q 040741          174 TYLPVGAD-G-------------IVNLDELRAAI------RPDTGLISVMAVNNEIGVIQP----MEEIGQICKEFKIPF  229 (457)
Q Consensus       174 ~~v~~~~~-~-------------~~d~~~le~~i------~~~t~li~i~~~~~~~G~~~~----l~~i~~l~~~~~v~l  229 (457)
                      ...+.... .             ..+++++++.+      .++...|+++.++...|.+.|    +++|.++|++||+++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gill  285 (461)
T d1ohwa_         206 PIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAF  285 (461)
T ss_dssp             CEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cccccccccccccccccccchhhhhhHHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcce
Confidence            11111100 0             12245555554      256788999999988887765    899999999999999


Q ss_pred             EEehhhh-cCCC--cccCCCC----cccEEEeccccccCCCCceEEEEecCCCccccccccCCccccccccCCCChhHHH
Q 040741          230 HTDAAQA-LGKI--PVDVEKW----NVSLMSLSGHKIYGPKGVGALYMRRRPRIRVEPLINGGGQERGIRSGTLPTPLIV  302 (457)
Q Consensus       230 i~D~a~~-~g~~--~~~~~~~----~~Di~~~s~~K~~g~~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  302 (457)
                      |+|++++ +|..  .+....+    .+|+++++  |.++.   |++.... ......+...++       ....++..++
T Consensus       286 I~DEV~tG~gRtG~~~~~e~~gi~~~PDiv~~g--K~l~~---g~~~~~~-~~~~~~~~~~~~-------T~~g~p~~~a  352 (461)
T d1ohwa_         286 LVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMT---GGFFHKE-EFRPNAPYRIFN-------TWLGDPSKNL  352 (461)
T ss_dssp             EEECTTTCSSTTSSSSGGGGGCCSSCCSEEEEC--GGGSS---EEEEECG-GGSCSSTTSSCC-------SCSSCHHHHH
T ss_pred             eccccccccccccccccccccccccCchhhhhh--hcccc---ccccccc-cccccccccccc-------ccccccccch
Confidence            9999996 3322  1222222    37888777  84432   3333332 222211111111       1234556777


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc---CCCe--EEeCCCCCcccceEEEEEcccc-chHHHhcc--cCeE
Q 040741          303 GFGSACEIAKKEMDYDHKRITALHDRLLNGIKEK---LDGV--VVNGSMERRYIGNLNLSFAYVE-GESLLMGL--KEVA  374 (457)
Q Consensus       303 al~~al~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l--~~i~  374 (457)
                      +..++++.+++  +...++.+++.+++.+.|.+.   .|.+  .+.+     .+.++.+.+...+ ...+...+  +|+.
T Consensus       353 aa~a~l~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG-----~Gl~~~ie~~~~~~~~~i~~~~~~~Gll  425 (461)
T d1ohwa_         353 LLAEVINIIKR--EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG-----RGTFCSFDTPDESIRNKLISIARNKGVM  425 (461)
T ss_dssp             HHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE-----ETTEEEEECSSHHHHHHHHHHHHHTTEE
T ss_pred             hhcccchhhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeee-----eeEEEEEEcCCHHHHHHHHHHHHHCCeE
Confidence            77778888876  345556666666666655441   4432  2222     1444445554221 12333333  5776


Q ss_pred             ecccCccCCCCCChhHHHHHcCCCccCCCCeEEEecCCCCCHHHHHHHHHHHHHHHHH
Q 040741          375 VSSGSACTSASLEPSYVLRALGVDEDMAHTSIRFGIGRFTTEAEVDRAIELTVKQVEK  432 (457)
Q Consensus       375 ~~~g~~~~~~~~~~~~~l~~~g~~~~~~~~~iRi~~~~~~t~edid~~~~~l~~~~~~  432 (457)
                      +.+.                       +.+.|||.++..+|++|+|.++++|++++++
T Consensus       426 ~~~~-----------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l~e  460 (461)
T d1ohwa_         426 LGGC-----------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDILAD  460 (461)
T ss_dssp             CEEE-----------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred             EeeC-----------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHHhc
Confidence            6431                       1268999999999999999999999999875