Citrus Sinensis ID: 040748

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580----
MAYSRRVSILIFCICFLGFILSVQARRHHSIKHKHTHHHNTYEFSETPSPSPSPQLTDPSNNTNAHNSANSPSPSPEADSPSDDWNADNSTAASSPSPEPSNPPSGYNAMRAPSPSTEPANPPNKGNGYDSPGAPSASHAPTNPLNGYNFTRTPSPSSGPAAPPNKGNDYNSPGAPTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEIDHC
cccccEEEEEEEHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEccccEEEEEEEEEcccccccEEEEEEEEEEcccccccccccccccccEEEEEEccEEEEEcEEEEcccccccccccccccccccccccccccccEEEEEEccccEEEEcEEEEcccccEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEEEEEccccEEEEccccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEcccccccccccccEEEEcEEEEEEEEEEEcccccEEEEccccccEEEEEEEEEEEEcccccccccccEEcEEEccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEccccEEEEEEEEEEccccccEEEEEEEEEEcccccHHccccccccEEEEEEEEcEEEEEEcEEEcccccHHcccccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEEccccEEEEEEEEEcccccEEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEEEccccEEEEEEEEEEEEEEEEccEEEEEEcccccccccccccEEEEEEEEEEEEEEccccccccEEEEcccccccccEEEEEEEEEEccccccccccHHccccccccccccccHHHcccccccccccccccc
MAYSRRVSILIFCICFLGFILSVQARRHhsikhkhthhhntyefsetpspspspqltdpsnntnahnsanspspspeadspsddwnadnstaasspspepsnppsgynamrapspstepanppnkgngydspgapsashaptnplngynftrtpspssgpaappnkgndynspgapttspanspddgnvidvrkfgavgdgisddtEAFKMTWDSAcqkdfavihvpygfsfmiqstiftgpcqgsivfqvdgtimppdgpeswlqknskrQWLVFYKINElslqgggtidgrghkwwdlpckphkgingttspgpcdspialRFFMSSNLTVqrlrikdspqfhfrfdncknvhiesihitapalspntdgihientnGVEIYNsvisngddcvsigsgcydvdirnitcgpghgisigslgnhnsracvsnitvRDSVikvsnngvriktwqggsgavsgitfsnihmnnvrnpiiidqyycltkdctnktsavYVSDILysnikgtydirsppmhfacsdtvpctnltlsevellpakgdlvsdpfcwnaygdlptltippvscllegiprslldneidhc
MAYSRRVSILIFCICFLGFILSVQARRHHSIKHKHTHHHNTYEFSETPSPSPSPQLTDPSNNTNAHNSANSPSPSPEADSPSDDWNADNSTAASSPSPEPSNPPSGYNAMRAPSPSTEPANPPNKGNGYDSPGAPSASHAPTNPLNGYNFTRTPSPSSGPAAPPNKGNDYNSPGAPTtspanspddgNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITapalspntdGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGvriktwqggsgaVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIprslldneidhc
MAYSRRVSilifcicflgfilSVQARRhhsikhkhthhhNTYEFsetpspspspqltdpsnntnahnsanspspspeadspsddWNADNSTAAsspspepsnppsGYNAMRAPSPSTEPANPPNKGNGYDSPGAPSASHAPTNPLNGYNFTRTpspssgpaappNKGNDYNSPGAPTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEIDHC
*****RVSILIFCICFLGFILSVQARRHH***************************************************************************************************************************************************************VIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSL********
****RRVSILIFCICFLGFILSVQARRHH**************************************************************************************************************************************************************NVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKD*TNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSC*****************
MAYSRRVSILIFCICFLGFILSVQARR*************************************************************************************************KGNGYDSPGAPSASHAPTNPLNGYNFTRT***********NKGNDYNSPGAPTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEIDHC
*AYSRRVSILIFCICFLGFILSVQARRH**************************************************************************************************************************************************************GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEG*************
iiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYSRRVSILIFCICFLGFILSVQARRHHSIKHKHTHHHNTYEFSETPSPSPSPQLTDPSNNTNAHNSANSPSPSPEADSPSDDWNADNSTAASSPSPEPSNPPSGYNAMRAPSPSTEPANPPNKGNGYDSPGAPSASHAPTNPLNGYNFTRTPSPSSGPAAPPNKGNDYNSPGAPTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEIDHC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query584 2.2.26 [Sep-21-2011]
Q949Z1475 Polygalacturonase At1g481 no no 0.674 0.829 0.635 1e-154
Q94AJ5444 Probable polygalacturonas no no 0.645 0.849 0.429 6e-90
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.601 0.682 0.448 6e-84
P43212514 Polygalacturonase OS=Cryp N/A no 0.607 0.690 0.443 2e-83
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.607 0.700 0.438 2e-81
Q02096462 Polygalacturonase OS=Pers N/A no 0.609 0.770 0.453 1e-80
P35336467 Polygalacturonase OS=Acti N/A no 0.609 0.762 0.435 1e-79
O23147431 Polygalacturonase ADPG1 O no no 0.583 0.791 0.429 8e-78
Q9SFB7439 Polygalacturonase QRT2 OS no no 0.621 0.826 0.418 4e-77
Q8RY29433 Polygalacturonase ADPG2 O no no 0.585 0.789 0.431 4e-76
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function desciption
 Score =  546 bits (1408), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 251/395 (63%), Positives = 313/395 (79%), Gaps = 1/395 (0%)

Query: 179 SPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTI 238
           +P +S D G V DV  FGAVGDG  DDT AF+  W +AC  +  V+  P G  F I STI
Sbjct: 70  APGDS-DSGCVFDVTSFGAVGDGSCDDTAAFQDAWKAACAVESGVVLAPEGGVFKITSTI 128

Query: 239 FTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWW 298
           F+GPC+  +VFQ+DG +MPPDGPE W +K++K QWLVFY+++  +  G GT++G G KWW
Sbjct: 129 FSGPCKPGLVFQLDGVLMPPDGPEEWPEKDNKNQWLVFYRLDGFTFSGKGTVEGNGQKWW 188

Query: 299 DLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIES 358
           DLPCKPH+G +G++S GPC SP  +RFFMS+N+ V+ LRI++SPQFH +FD C+ V I  
Sbjct: 189 DLPCKPHRGPDGSSSSGPCASPTMIRFFMSNNIEVKGLRIQNSPQFHMKFDGCQGVLINE 248

Query: 359 IHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGIS 418
           I I++P LSPNTDGIH+ NT  V IYNSV+SNGDDC+SIG+GC DVDI+ +TCGP HGIS
Sbjct: 249 IQISSPKLSPNTDGIHLGNTRSVGIYNSVVSNGDDCISIGTGCSDVDIQGVTCGPSHGIS 308

Query: 419 IGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPII 478
           IGSLG HNS+ACVSNITVR++VI+ S+NG+R+KTWQGG+G+VS + F NI M NV N II
Sbjct: 309 IGSLGVHNSQACVSNITVRNTVIRDSDNGLRVKTWQGGTGSVSNLLFENIQMENVLNCII 368

Query: 479 IDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELL 538
           +DQYYC +KDC N+TSAV V D+ Y NIKGTYD+RSPP+HFACSDTV CTN+T+SEVELL
Sbjct: 369 VDQYYCQSKDCRNETSAVKVFDVEYRNIKGTYDVRSPPIHFACSDTVACTNITMSEVELL 428

Query: 539 PAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIP 573
           P +G+LV DPFCWNAYG   TLTIPP+ CLL+G P
Sbjct: 429 PEEGELVDDPFCWNAYGKQETLTIPPIDCLLDGSP 463
Polygalacturonase not involved in the final stages of pod shatter.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
255548325537 Polygalacturonase precursor, putative [R 0.916 0.996 0.667 0.0
224128211438 predicted protein [Populus trichocarpa] 0.678 0.904 0.863 0.0
359479968465 PREDICTED: polygalacturonase At1g48100-l 0.702 0.881 0.805 0.0
297744034484 unnamed protein product [Vitis vinifera] 0.702 0.847 0.805 0.0
356499681473 PREDICTED: polygalacturonase At1g48100-l 0.732 0.904 0.756 0.0
357442133478 Polygalacturonase [Medicago truncatula] 0.678 0.828 0.794 0.0
356536665475 PREDICTED: polygalacturonase At1g48100-l 0.679 0.835 0.789 0.0
356571013462 PREDICTED: polygalacturonase At1g48100-l 0.678 0.857 0.806 0.0
356503952462 PREDICTED: polygalacturonase At1g48100-l 0.678 0.857 0.796 0.0
224068659457 predicted protein [Populus trichocarpa] 0.666 0.851 0.803 0.0
>gi|255548325|ref|XP_002515219.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223545699|gb|EEF47203.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/586 (66%), Positives = 440/586 (75%), Gaps = 51/586 (8%)

Query: 1   MAYSRRVSILIFCICFLGFILSVQARRHHSIKHKHTHHHNTYEFSETPSPSPSPQLTDPS 60
           M +SR +   +FC  F+ F L  QAR HH   H H   H    +    S   +P    P 
Sbjct: 1   MGFSR-LPYFVFCTSFIFFFLCTQARWHHHQHHHHHTKHKHSHYHHRVSTISAP----PE 55

Query: 61  NNTNAHNSANSPSPSPEADSPSDDWNADNSTAASSPSPEPSNPPSGYNAMRAPS-PSTEP 119
           N       AN P   PE  +P                  P  PP   N   APS P+  P
Sbjct: 56  N-------ANPPYDPPENANP------------------PYAPPENANTPYAPSEPADPP 90

Query: 120 ANPPNKGNGYDSPGAPSASHAPTNPLNGYNFTRTPSPSSGPAAPPNKGNDYNSPGAPTTS 179
           + PP + N +  P   +   +P    N      +       + P + GNDYNS       
Sbjct: 91  SFPPEETNLHSPPKFANPPSSPPKSSN----LPSSPSPEPASPPDDDGNDYNS------- 139

Query: 180 PANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSAC-QKDFAVIHVPYGFSFMIQSTI 238
                    V+DVRKFGA+GDGI+DDT+AFKM W++AC Q D A+I VPY F FMIQSTI
Sbjct: 140 --------GVLDVRKFGAIGDGITDDTDAFKMAWETACSQNDTAIILVPYTFKFMIQSTI 191

Query: 239 FTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWW 298
           F GPCQG IVFQVDGTIMPPDGPESW QKNSKRQWLVFY+INELSL GGGTIDGRG KWW
Sbjct: 192 FNGPCQGGIVFQVDGTIMPPDGPESWPQKNSKRQWLVFYRINELSLLGGGTIDGRGEKWW 251

Query: 299 DLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIES 358
           DLPCKPHKGINGTT PGPCDSPIA+RFFMSSNLTVQ +RIK+SPQF+FRFDNC+NVHI+S
Sbjct: 252 DLPCKPHKGINGTTLPGPCDSPIAIRFFMSSNLTVQGIRIKNSPQFNFRFDNCRNVHIDS 311

Query: 359 IHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGIS 418
           IHITAPALSPNTDGIHIENTN VEIY+SVISNGDDCVSIGSGCYDVDIRNITCGP HGIS
Sbjct: 312 IHITAPALSPNTDGIHIENTNNVEIYDSVISNGDDCVSIGSGCYDVDIRNITCGPSHGIS 371

Query: 419 IGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPII 478
           IGSLGNHNSRACVSNITVRDSVIK+S+NGVRIKTWQGGSGAV+GITFSNIHM+NV+NPII
Sbjct: 372 IGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGAVTGITFSNIHMDNVKNPII 431

Query: 479 IDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELL 538
           IDQ+YCLTK+C+N+TSAV+VSDILY NIKGTY+IRSPPMHFACSD+VPCTNLTLSEVELL
Sbjct: 432 IDQFYCLTKECSNQTSAVFVSDILYENIKGTYNIRSPPMHFACSDSVPCTNLTLSEVELL 491

Query: 539 PAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEIDHC 584
           PA+GDLV DPFCWNAYG+L TLTIPPVSCL+EG P SLL+N+ID+C
Sbjct: 492 PAQGDLVLDPFCWNAYGELETLTIPPVSCLMEGTPSSLLNNDIDYC 537

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128211|ref|XP_002320271.1| predicted protein [Populus trichocarpa] gi|222861044|gb|EEE98586.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359479968|ref|XP_002272733.2| PREDICTED: polygalacturonase At1g48100-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297744034|emb|CBI37004.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356499681|ref|XP_003518665.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|357442133|ref|XP_003591344.1| Polygalacturonase [Medicago truncatula] gi|355480392|gb|AES61595.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356536665|ref|XP_003536857.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|356571013|ref|XP_003553676.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|356503952|ref|XP_003520763.1| PREDICTED: polygalacturonase At1g48100-like [Glycine max] Back     alignment and taxonomy information
>gi|224068659|ref|XP_002302793.1| predicted protein [Populus trichocarpa] gi|222844519|gb|EEE82066.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query584
TAIR|locus:2196055491 AT1G02460 [Arabidopsis thalian 0.710 0.845 0.716 1.6e-173
TAIR|locus:2141345468 AT4G01890 [Arabidopsis thalian 0.707 0.882 0.660 4.8e-157
TAIR|locus:2023817475 AT1G48100 [Arabidopsis thalian 0.686 0.844 0.628 2.2e-150
TAIR|locus:2027534434 AT1G56710 [Arabidopsis thalian 0.686 0.923 0.619 3.2e-145
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.654 0.878 0.472 5.2e-97
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.650 0.855 0.432 1.8e-87
TAIR|locus:2088842470 AT3G26610 [Arabidopsis thalian 0.660 0.821 0.422 4.9e-85
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.654 0.816 0.430 5.6e-84
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.633 0.804 0.425 8.5e-81
TAIR|locus:2054396433 PGAZAT "polygalacturonase absc 0.583 0.787 0.435 9e-77
TAIR|locus:2196055 AT1G02460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1659 (589.1 bits), Expect = 1.6e-173, Sum P(2) = 1.6e-173
 Identities = 303/423 (71%), Positives = 353/423 (83%)

Query:   169 DYNSPGAPTTSPANSP-DDGN-VIDVRKFGAVGDGISDDTEAFKMTWDSACQKDF---AV 223
             D  +P  P  SP++ P DD N + +VRK+GAVGDG +DDTEAFK  WDS+C  +    +V
Sbjct:    67 DSPAPSLPP-SPSDDPADDNNGIYNVRKYGAVGDGETDDTEAFKTAWDSSCNNENNTDSV 125

Query:   224 IHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELS 283
             + VPYG++FMIQSTIFTGPC+    FQVDGTI+ PDGPESW    SKRQWLVFY++N ++
Sbjct:   126 LLVPYGYTFMIQSTIFTGPCRSYQFFQVDGTIVTPDGPESWPSNISKRQWLVFYRVNGMA 185

Query:   284 LQGGGTIDGRGHKWWDLPCKPHKGINGTTS-PGPCDSPIALRFFMSSNLTVQRLRIKDSP 342
             L+G G IDGRG KWWDLPCKPH+ +N +    GPCDSPIALRFFMSSNL V+ L+IK+SP
Sbjct:   186 LKGEGVIDGRGQKWWDLPCKPHRSVNKSAIVTGPCDSPIALRFFMSSNLRVEGLQIKNSP 245

Query:   343 QFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCY 402
             QFHFRFD C+ VH+ES+HITAP LSPNTDGIHIEN+N V IYNS+ISNGDDCVSIGSG Y
Sbjct:   246 QFHFRFDGCQGVHVESLHITAPPLSPNTDGIHIENSNSVTIYNSIISNGDDCVSIGSGSY 305

Query:   403 DVDIRNITCGPG-HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVS 461
             DVDIRN+TCGPG HGISIGSLGNHNSRACVSNITVRDSVIK S+NGVRIKTWQGGSG+VS
Sbjct:   306 DVDIRNLTCGPGGHGISIGSLGNHNSRACVSNITVRDSVIKYSDNGVRIKTWQGGSGSVS 365

Query:   462 GITFSNIHMNNVRNPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFAC 521
             G+TF+NIH+++VRNPIIIDQYYC+TKDC NKTSAV+VSDI Y  IKGTYDIRSPPMHF C
Sbjct:   366 GVTFNNIHVDSVRNPIIIDQYYCMTKDCANKTSAVFVSDIAYQGIKGTYDIRSPPMHFGC 425

Query:   522 SDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDNEI 581
             SD VPCTNLTLS++ELLPAKG++V DPFCWNAYG    L+IPPV CL+   P+ L  + +
Sbjct:   426 SDAVPCTNLTLSDIELLPAKGEIVLDPFCWNAYGIAEELSIPPVWCLMSDPPKGLQGSLV 485

Query:   582 DHC 584
             D C
Sbjct:   486 DKC 488
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2141345 AT4G01890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2023817 AT1G48100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027534 AT1G56710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088842 AT3G26610 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2054396 PGAZAT "polygalacturonase abscission zone A. thaliana" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIV.2207.1
hypothetical protein (438 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-122
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 6e-99
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 7e-91
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-83
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 4e-82
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-73
PLN03010409 PLN03010, PLN03010, polygalacturonase 6e-73
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-23
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-08
pfam04652315 pfam04652, DUF605, Vta1 like 4e-07
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 8e-07
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-06
pfam04652315 pfam04652, DUF605, Vta1 like 2e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-05
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 4e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 4e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 5e-05
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-04
PRK10856331 PRK10856, PRK10856, cytoskeletal protein RodZ; Pro 2e-04
pfam09606768 pfam09606, Med15, ARC105 or Med15 subunit of Media 3e-04
COG3827231 COG3827, COG3827, Uncharacterized protein conserve 4e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 6e-04
PRK10856331 PRK10856, PRK10856, cytoskeletal protein RodZ; Pro 6e-04
pfam05466233 pfam05466, BASP1, Brain acid soluble protein 1 (BA 6e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 0.001
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 0.001
pfam13229157 pfam13229, Beta_helix, Right handed beta helix reg 0.001
PRK12495226 PRK12495, PRK12495, hypothetical protein; Provisio 0.001
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.001
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.002
PRK07764824 PRK07764, PRK07764, DNA polymerase III subunits ga 0.002
pfam05109830 pfam05109, Herpes_BLLF1, Herpes virus major outer 0.002
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.002
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 0.002
PRK14950585 PRK14950, PRK14950, DNA polymerase III subunits ga 0.003
PTZ00441576 PTZ00441, PTZ00441, sporozoite surface protein 2 ( 0.004
PRK14971614 PRK14971, PRK14971, DNA polymerase III subunits ga 0.004
PRK14086617 PRK14086, dnaA, chromosomal replication initiation 0.004
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  368 bits (947), Expect = e-122
 Identities = 184/389 (47%), Positives = 238/389 (61%), Gaps = 13/389 (3%)

Query: 179 SPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQ-KDFAVIHVPYGFSFMIQST 237
           S    P    V+ V  FGA GDG++DDT+AFK  W  AC  K    I +P G++F+++  
Sbjct: 42  SARTRPRSERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPI 101

Query: 238 IFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKW 297
              GPC+  +  Q+ GTI+ P  P+ W   N  R+WL F+ +N L+++GGGT++G GH+W
Sbjct: 102 DLGGPCKAKLTLQISGTIIAPKDPDVWKGLN-PRKWLYFHGVNHLTVEGGGTVNGMGHEW 160

Query: 298 WDLPCKPHKGINGTTSPGPCD-SPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHI 356
           W   CK    IN T    PC  +P A+ F    +L V+ L + DS Q H  F NC+ V I
Sbjct: 161 WAQSCK----INHTN---PCRHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTI 213

Query: 357 ESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHG 416
             + + APA SPNTDGIHI  + GV I +S++  GDDC+SI      + IRNI CGPGHG
Sbjct: 214 SGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHG 273

Query: 417 ISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNP 476
           ISIGSLG  NS + V +ITV  + +  ++NGVRIKTWQGGSG  S ITF NI M NV NP
Sbjct: 274 ISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNP 333

Query: 477 IIIDQYYCLT-KDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEV 535
           IIIDQYYC + K C N+TSAV V +I + +IKGT       + FACSD+ PC  L L +V
Sbjct: 334 IIIDQYYCDSRKPCANQTSAVKVENISFVHIKGT-SATEEAIKFACSDSSPCEGLYLEDV 392

Query: 536 ELLPAKGDLVSDPFCWNAYGDLPTLTIPP 564
           +LL + GD     FCW AYG       PP
Sbjct: 393 QLLSSTGDFTES-FCWEAYGSSSGQVYPP 420

Length = 443
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional Back     alignment and domain information
>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal Back     alignment and domain information
>gnl|CDD|226348 COG3827, COG3827, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional Back     alignment and domain information
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein) Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|221993 pfam13229, Beta_helix, Right handed beta helix region Back     alignment and domain information
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope glycoprotein (BLLF1) Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional Back     alignment and domain information
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 584
PLN02793443 Probable polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02155394 polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.89
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.83
PLN03003456 Probable polygalacturonase At3g15720 99.8
PLN02218431 polygalacturonase ADPG 99.79
PLN02793443 Probable polygalacturonase 99.79
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.79
PLN03010409 polygalacturonase 99.78
PLN02155394 polygalacturonase 99.75
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.75
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.68
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.57
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.3
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.82
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.62
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.45
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.41
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.39
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.34
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.29
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.28
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.27
smart00656190 Amb_all Amb_all domain. 98.17
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.13
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.1
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.07
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.04
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 97.91
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.81
smart00656190 Amb_all Amb_all domain. 97.72
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.71
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.65
PRK10531422 acyl-CoA thioesterase; Provisional 97.59
PLN02665366 pectinesterase family protein 97.54
PLN02480343 Probable pectinesterase 97.53
PLN02682369 pectinesterase family protein 97.51
PLN02773317 pectinesterase 97.47
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.43
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.42
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.25
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.22
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.21
PLN02301548 pectinesterase/pectinesterase inhibitor 97.21
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.2
PLN02916502 pectinesterase family protein 97.19
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.18
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.18
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.18
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.17
PLN02197588 pectinesterase 97.14
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.12
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.12
PLN02304379 probable pectinesterase 97.12
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.09
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.09
PLN02634359 probable pectinesterase 97.07
PLN02314586 pectinesterase 97.06
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.05
PLN02432293 putative pectinesterase 97.05
PLN02176340 putative pectinesterase 96.98
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 96.95
PLN02671359 pectinesterase 96.95
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.93
PLN02497331 probable pectinesterase 96.92
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.88
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.74
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.6
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.91
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.75
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 95.61
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.7
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 91.29
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 90.86
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.85
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 90.42
PLN02480343 Probable pectinesterase 89.78
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 89.6
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 88.19
PLN02665366 pectinesterase family protein 87.77
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.53
PLN02682369 pectinesterase family protein 87.17
PLN02170529 probable pectinesterase/pectinesterase inhibitor 87.03
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 86.73
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 86.56
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 85.75
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 85.02
PLN02301548 pectinesterase/pectinesterase inhibitor 84.79
PRK10531422 acyl-CoA thioesterase; Provisional 84.69
PLN02468565 putative pectinesterase/pectinesterase inhibitor 84.43
PLN02416541 probable pectinesterase/pectinesterase inhibitor 84.34
PLN02197588 pectinesterase 84.0
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 83.9
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 83.86
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 83.48
PLN02314586 pectinesterase 82.13
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 81.67
PLN02634359 probable pectinesterase 81.49
PLN02313587 Pectinesterase/pectinesterase inhibitor 81.16
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.1e-71  Score=603.10  Aligned_cols=382  Identities=46%  Similarity=0.899  Sum_probs=343.8

Q ss_pred             CceEEEecccccCCCCcchHHHHHHHHHHHhhc-CCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCccc
Q 040748          187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQK-DFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESWL  265 (584)
Q Consensus       187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~-~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~~  265 (584)
                      +.++||++|||+|||.+|||+|||+||++||+. +|++|+||+|++|+++++.|++|||++++|+++|+|+++.+..+|+
T Consensus        50 ~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~g~l~~~~d~~~w~  129 (443)
T PLN02793         50 ERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQISGTIIAPKDPDVWK  129 (443)
T ss_pred             ceEEEhhhcccCCCCCCccHHHHHHHHHHHhccCCCCEEEECCCceEEEEEEEECCccCCCeEEEEEEEEEccCChHHcc
Confidence            479999999999999999999999999976664 4789999999779999999999999999999999999999999998


Q ss_pred             ccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEeecCceEeeeeEecCCCce
Q 040748          266 QKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFH  345 (584)
Q Consensus       266 ~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~  345 (584)
                      .. ....||++.+.+||+|+|.|+|||+|+.||....+... .+.     -..||++|.|.+|+|++|+|++++|++.|+
T Consensus       130 ~~-~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~-~~~-----~~~rP~~i~f~~~~nv~v~gitl~nSp~~~  202 (443)
T PLN02793        130 GL-NPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINH-TNP-----CRHAPTAITFHKCKDLRVENLNVIDSQQMH  202 (443)
T ss_pred             CC-CCceEEEEecCceEEEEeceEEECCCcccccccccccC-CCC-----ccCCceEEEEEeeccEEEECeEEEcCCCeE
Confidence            64 34579999999999999999999999999975322111 010     015899999999999999999999999999


Q ss_pred             eeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEecccCCCCcceeeccCCC
Q 040748          346 FRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNH  425 (584)
Q Consensus       346 I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~Nc~~~~g~GI~IGS~g~~  425 (584)
                      +++..|+||+|++++|.++..++|+||||+.+|+||+|+||+|.++||||+++++++||+|+||+|..+|||+|||++++
T Consensus       203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~  282 (443)
T PLN02793        203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKS  282 (443)
T ss_pred             EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCc
Confidence            99999999999999999988889999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecC-CCCCCCCCCCeeEEeEEEE
Q 040748          426 NSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCL-TKDCTNKTSAVYVSDILYS  504 (584)
Q Consensus       426 ~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~-~~~~~~~~~~~~I~nItf~  504 (584)
                      ...+.|+||+|+||+|.++.+|+|||+|+++.|.|+||+|+||+|+++.+||.|+++|+. ...|.+....+.|+||+|+
T Consensus       283 ~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~  362 (443)
T PLN02793        283 NSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFV  362 (443)
T ss_pred             CCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEE
Confidence            667889999999999999999999999999999999999999999999999999999986 4468777788999999999


Q ss_pred             eEEEeecCCCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCccccCcCCCCCcccc
Q 040748          505 NIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCLLEGIPRSLLDN  579 (584)
Q Consensus       505 NI~gt~~~~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~~~~~~~~~~~~~~  579 (584)
                      ||+++...+ .++.+.|++..+|+||+|+||+|+...|.. ....|||++|...+...|| +||.++.| .+.|+
T Consensus       363 nI~Gt~~~~-~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~-~~~~C~n~~g~~~~~~~p~-~C~~~~~~-~~~~~  433 (443)
T PLN02793        363 HIKGTSATE-EAIKFACSDSSPCEGLYLEDVQLLSSTGDF-TESFCWEAYGSSSGQVYPP-PCFSDSTS-FIKQK  433 (443)
T ss_pred             EEEEEEccc-ccEEEEeCCCCCEeeEEEEeeEEEecCCCC-CCcEEEccEEeECCeEcCC-ccccCCCc-ccccc
Confidence            999998643 578999999999999999999999887663 4578999999999998888 99998875 44444

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
1nhc_A336 Structural Insights Into The Processivity Of Endopo 2e-25
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 8e-22
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 6e-21
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 1e-20
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-18
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 4e-18
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-15
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 2e-10
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 1e-08
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 1e-04
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure 
Iteration: 1

 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 141/296 (47%), Gaps = 20/296 (6%)
Query: 252 DGTIMPPDGPESWLQKNSKRQWLVFY-KINELSLQGGGTIDGRGHKWWDLPCKPHKGING 310
           DG+ +  +G  S+  K  K   + F  K   +++  G  IDG G +WWD      KG NG
Sbjct: 41  DGSTITFEGTTSFGYKEWKGPLIRFGGKDLTVTMADGAVIDGDGSRWWD-----SKGTNG 95
Query: 311 TTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPN- 369
             +      P  +      + T + + IK++P          NVH+    I       N 
Sbjct: 96  GKTK-----PKFMYIHDVEDSTFKGINIKNTPVQAISV-QATNVHLNDFTIDNSDGDDNG 149
Query: 370 ---TDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGISIGSLGNHN 426
              TDG  I  + GV I  + + N DDC++I SG   +     TC  GHG+SIGS+G  +
Sbjct: 150 GHNTDGFDISESTGVYISGATVKNQDDCIAINSG-ESISFTGGTCSGGHGLSIGSVGGRD 208
Query: 427 SRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRN-PIIIDQYYCL 485
               V N+T+ DS +  S NGVRIKT    +G VS IT+SNI ++ + +  I+I+Q Y  
Sbjct: 209 DNT-VKNVTISDSTVSNSANGVRIKTIYKETGDVSEITYSNIQLSGITDYGIVIEQDYEN 267
Query: 486 TKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSEVELLPAK 541
                  ++ + ++D+    + GT +  +  ++  C D   C++ T S V+L   K
Sbjct: 268 GSPTGTPSTGIPITDVTVDGVTGTLEDDATQVYILCGDG-SCSDWTWSGVDLSGGK 322
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query584
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-125
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-115
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-112
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-108
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-104
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-102
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-100
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 2e-91
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-88
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 4e-29
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-26
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 4e-26
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-24
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 3e-18
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 5e-15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 2e-11
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-08
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 5e-08
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 4e-07
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 8e-07
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-06
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 6e-06
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-05
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 3e-05
1twf_A1733 B220, DNA-directed RNA polymerase II largest subun 2e-04
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 5e-07
3dzy_A467 Retinoic acid receptor RXR-alpha; DNA-binding, HOS 3e-05
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 6e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 8e-07
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 2e-06
3h0g_A1752 DNA-directed RNA polymerase II subunit RPB1; trans 5e-06
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 3e-04
1deq_A390 Fibrinogen (alpha chain); coiled-coil, blood clott 6e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  372 bits (958), Expect = e-125
 Identities = 90/393 (22%), Positives = 153/393 (38%), Gaps = 35/393 (8%)

Query: 178 TSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQST 237
            + A++       ++  +GAV D  +D   A    W +AC+    ++++P G   +    
Sbjct: 9   LTSASTKGATKTCNILSYGAVADNSTDVGPAITSAW-AACKSG-GLVYIPSGNYALNTWV 66

Query: 238 IFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKW 297
             TG    +   Q+DG I                           S    G + G G+ +
Sbjct: 67  TLTGGS--ATAIQLDGIIYRTGTASGN-----MIAVTDTTDFELFSSTSKGAVQGFGYVY 119

Query: 298 WDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIE 357
                                    LR    ++ +V  + + D+P FHF  D C +  + 
Sbjct: 120 H---------------AEGTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVY 164

Query: 358 SIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPGHGI 417
           ++ I         DGI +  +N + +++  ++N D+CV++ S   ++ + +I C    G 
Sbjct: 165 NMAIRGGN-EGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGC 222

Query: 418 SIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPI 477
           ++GSLG       V++I  R+     SN    IK+  GGSG VS +   N   +     +
Sbjct: 223 AMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSL 278

Query: 478 IIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTY--DIRSPPMHFACSDTVPCTNLTLSEV 535
            ID Y+            V +++I   N KGT       PP+   CSDT PCT+LTL ++
Sbjct: 279 DIDGYWS--SMTAVAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDI 336

Query: 536 ELLPAKGDLVSDPFCWNAYGDLPTLTIPPVSCL 568
            +    G       C +AYG    L        
Sbjct: 337 AIWTESGSSEL-YLCRSAYGSGYCLKDSSSHTS 368
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe} Length = 1752 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.96
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 99.95
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.9
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.87
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.86
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.83
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.83
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.82
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.81
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.8
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.79
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.79
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.77
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.69
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.66
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.53
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.53
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.46
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.34
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.31
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.28
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.23
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.05
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.65
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.4
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.32
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.31
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.28
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.27
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.25
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.24
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.22
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.19
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.18
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.15
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.13
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.11
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.1
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.05
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.98
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.98
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.97
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.96
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.95
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.92
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.9
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.66
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.64
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.63
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.47
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.42
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 97.31
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.25
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 96.77
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.42
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.03
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.23
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.16
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.55
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 94.46
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.44
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 93.18
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 92.95
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 91.52
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 91.36
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 89.86
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 87.11
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.1e-59  Score=509.12  Aligned_cols=338  Identities=25%  Similarity=0.352  Sum_probs=295.1

Q ss_pred             CceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeeeeeeecccCCceEEeeeeeecCCCCCCcc-c
Q 040748          187 GNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQSTIFTGPCQGSIVFQVDGTIMPPDGPESW-L  265 (584)
Q Consensus       187 ~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~~~ltgp~ksnvtL~l~GtL~~s~~~~~~-~  265 (584)
                      +.+++|++|||+|||.+|||+|||+||++|++.+|++|+||+| +|+++++.|    +++++|+++|+|+++.+..+| +
T Consensus        25 ~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~~ggg~v~vP~G-~yl~~~l~l----~s~v~l~l~gtL~~s~d~~~y~p   99 (448)
T 3jur_A           25 DREVNLLDFGARGDGRTDCSESFKRAIEELSKQGGGRLIVPEG-VFLTGPIHL----KSNIELHVKGTIKFIPDPERYLP   99 (448)
T ss_dssp             SCEEEGGGGTCCCEEEEECHHHHHHHHHHHHHHTCEEEEECSS-EEEESCEEC----CTTEEEEESSEEEECCCGGGGCS
T ss_pred             CcEEEEEecccCCCCCeecHHHHHHHHHhhhhcCCeEEEECCC-cEEEeeeEe----CCCcEEEEEEEEEecCCHHHhCc
Confidence            5799999999999999999999999999766557899999999 899998887    899999999999999999888 3


Q ss_pred             ccC---------CcceeEEEeeeeceEEecCeEEeCCC--CccccCCCCCCCC-----CC------------------CC
Q 040748          266 QKN---------SKRQWLVFYKINELSLQGGGTIDGRG--HKWWDLPCKPHKG-----IN------------------GT  311 (584)
Q Consensus       266 ~~~---------~~~~lI~~~~~~NVtI~G~G~IDGnG--~~ww~~~~~~~~g-----~~------------------g~  311 (584)
                      ...         ...+||++.+++||+|+|.|+|||+|  +.||........+     ..                  ..
T Consensus       100 ~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~  179 (448)
T 3jur_A          100 VVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEE  179 (448)
T ss_dssp             CEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHTCCGGG
T ss_pred             ccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhcccCcchh
Confidence            211         13568999999999999999999999  8899753210000     00                  00


Q ss_pred             CC--CCCCCCCeeEEEEeecCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEe
Q 040748          312 TS--PGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVIS  389 (584)
Q Consensus       312 ~~--~g~~~rP~~I~f~~s~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~  389 (584)
                      ++  .+...||++|.|.+|+|++|+|++++|++.|++++..|+||+|+|++|.++  ++|+||||+.+|++|+|+||+|.
T Consensus       180 ~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~n~~i~  257 (448)
T 3jur_A          180 RVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIEKCRFD  257 (448)
T ss_dssp             CBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEESCEEE
T ss_pred             hhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEEeeEEE
Confidence            00  123479999999999999999999999999999999999999999999996  57999999999999999999999


Q ss_pred             cCCCcEEeCCC-----------ceeEEEEeccc--CCCC-cceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecC
Q 040748          390 NGDDCVSIGSG-----------CYDVDIRNITC--GPGH-GISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQG  455 (584)
Q Consensus       390 ~gDDgIai~sg-----------s~NV~I~Nc~~--~~g~-GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g  455 (584)
                      ++||||+++++           ++||+|+||+|  ..+| ||+|||++    .+.++||+|+||+|.++.+|++||++.+
T Consensus       258 ~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t~~GirIKt~~g  333 (448)
T 3jur_A          258 TGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNVERALRLKTNSR  333 (448)
T ss_dssp             ESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESCSEEEEEECCTT
T ss_pred             eCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecccceEEEEEEcC
Confidence            99999999987           89999999999  6676 79999986    4689999999999999999999999998


Q ss_pred             CCCeEEeEEEEceEEcCCcccE-EEEEeecCCCCCCCCCCCeeEEeEEEEeEEEeecCCCCCeEEecCCCCceecEEEEe
Q 040748          456 GSGAVSGITFSNIHMNNVRNPI-IIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTYDIRSPPMHFACSDTVPCTNLTLSE  534 (584)
Q Consensus       456 ~~G~V~NItf~NI~i~~v~~~I-~I~~~y~~~~~~~~~~~~~~I~nItf~NI~gt~~~~~~~i~i~~~~~~~~~nItf~N  534 (584)
                      ++|.|+||+|+||+|+++.+++ .|+++|+..  +  ....+.|+||+|+||+++.. . .++.+.|.+..+|+||+|+|
T Consensus       334 ~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~--~~~~~~i~nI~~~NI~~t~~-~-~~i~i~g~~~~p~~~I~~~n  407 (448)
T 3jur_A          334 RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E--GEYLPVVRSVFVKNLKATGG-K-YAVRIEGLENDYVKDILISD  407 (448)
T ss_dssp             TCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C--CSCCCEEEEEEEESCEEEEC-S-EEEEEECBTTBCEEEEEEEE
T ss_pred             CCceEeeEEEEEEEEECCccccEEEEeeccCC--C--CCCCceEEEEEEEeEEEEec-c-eEEEEEeCCCCCEeeEEEEE
Confidence            8899999999999999999988 999998754  2  23467999999999999873 2 57889999999999999999


Q ss_pred             EEEEcCC
Q 040748          535 VELLPAK  541 (584)
Q Consensus       535 I~i~~~~  541 (584)
                      |+|++.+
T Consensus       408 v~i~~~~  414 (448)
T 3jur_A          408 TIIEGAK  414 (448)
T ss_dssp             EEEESCS
T ss_pred             EEEEccc
Confidence            9999765
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 584
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 1e-81
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-70
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-68
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 4e-62
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-61
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 7e-60
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-55
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-55
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  260 bits (665), Expect = 1e-81
 Identities = 92/388 (23%), Positives = 153/388 (39%), Gaps = 36/388 (9%)

Query: 175 APTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMI 234
            P TS +         ++  +GAV D  +D   A    W  AC+    ++++P G   + 
Sbjct: 7   GPLTSASTKGAT-KTCNILSYGAVADNSTDVGPAITSAWA-ACKSG-GLVYIPSGNYALN 63

Query: 235 QSTIFTGPCQGSIVFQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRG 294
                TG    +   Q+DG I         +                 S    G + G G
Sbjct: 64  TWVTLTGGS--ATAIQLDGIIYRTGTASGNM-----IAVTDTTDFELFSSTSKGAVQGFG 116

Query: 295 HKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMSSNLTVQRLRIKDSPQFHFRFDNCKNV 354
           + +                         LR    ++ +V  + + D+P FHF  D C + 
Sbjct: 117 YVYHAEGTY---------------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDG 161

Query: 355 HIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRNITCGPG 414
            + ++ I         DGI +  +N + +++  ++N D+CV++ S   ++ + +I C   
Sbjct: 162 EVYNMAIRGGN-EGGLDGIDVWGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWS 219

Query: 415 HGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVR 474
            G ++GSLG       V++I  R+     SN    IK+  GGSG VS +   N   +   
Sbjct: 220 GGCAMGSLGADTD---VTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNA 275

Query: 475 NPIIIDQYYCLTKDCTNKTSAVYVSDILYSNIKGTY--DIRSPPMHFACSDTVPCTNLTL 532
             + ID Y+            V +++I   N KGT       PP+   CSDT PCT+LTL
Sbjct: 276 YSLDIDGYWSSMTAVAG--DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTL 333

Query: 533 SEVELLPAKGDLVSDPFCWNAYGDLPTL 560
            ++ +    G       C +AYG    L
Sbjct: 334 EDIAIWTESGSSEL-YLCRSAYGSGYCL 360
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query584
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.78
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.75
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.74
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.73
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.69
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.68
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.57
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.5
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.45
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.53
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.36
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.03
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.03
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.98
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.73
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.69
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.66
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.52
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.5
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.45
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.37
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.17
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.15
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.03
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.48
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.13
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.27
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.27
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 93.25
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 90.88
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 87.36
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 83.25
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 81.87
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=5.1e-59  Score=500.83  Aligned_cols=361  Identities=25%  Similarity=0.433  Sum_probs=306.6

Q ss_pred             CCCCCCCCCCCCCCCCCCceEEEecccccCCCCcchHHHHHHHHHHHhhcCCcEEEEcCCeEEEeee-eeeecccCCceE
Q 040748          170 YNSPGAPTTSPANSPDDGNVIDVRKFGAVGDGISDDTEAFKMTWDSACQKDFAVIHVPYGFSFMIQS-TIFTGPCQGSIV  248 (584)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~v~~~GA~gdg~tDdT~Aiq~Ai~~a~~~~g~~v~~p~G~tY~i~~-~~ltgp~ksnvt  248 (584)
                      |.+++||.++.+..+. ..++||+||||+|||++|||+|||+||+ ||+ .|++|+||+| +|++.. +.|.+  .+++.
T Consensus         2 ~~~~~gp~~~~~~~~~-~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~-~gg~V~iP~G-ty~l~~~i~l~g--~~~~~   75 (422)
T d1rmga_           2 LSGSVGPLTSASTKGA-TKTCNILSYGAVADNSTDVGPAITSAWA-ACK-SGGLVYIPSG-NYALNTWVTLTG--GSATA   75 (422)
T ss_dssp             CSSCCSCSSCHHHHHH-HCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT-BTCEEEECSS-EEEECSCEEEES--CEEEE
T ss_pred             CcCccCCcccccccCC-CcEEEEecCCCCCCCCccCHHHHHHHHH-hcC-CCCEEEECCC-cEEEeCcEEEcC--CCceE
Confidence            4566666665444332 5799999999999999999999999997 464 4679999999 676654 77777  56788


Q ss_pred             EeeeeeecCCCCCCcccccCCcceeEEEeeeeceEEecCeEEeCCCCccccCCCCCCCCCCCCCCCCCCCCCeeEEEEee
Q 040748          249 FQVDGTIMPPDGPESWLQKNSKRQWLVFYKINELSLQGGGTIDGRGHKWWDLPCKPHKGINGTTSPGPCDSPIALRFFMS  328 (584)
Q Consensus       249 L~l~GtL~~s~~~~~~~~~~~~~~lI~~~~~~NVtI~G~G~IDGnG~~ww~~~~~~~~g~~g~~~~g~~~rP~~I~f~~s  328 (584)
                      |+++|+|++......|.     ..+....+.+.+.+.|.|+|||+|..||...               ..+|++|+|.+|
T Consensus        76 l~~~G~i~~~~~~~~~~-----~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~---------------~~~p~~l~~~~~  135 (422)
T d1rmga_          76 IQLDGIIYRTGTASGNM-----IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG---------------TYGARILRLTDV  135 (422)
T ss_dssp             EEECSEEEECCCCSSEE-----EEEEEEEEEEEECSSSCCEEECCTHHHHTTT---------------CCCCEEEEEEEE
T ss_pred             EEEeEEEEeccCCccCE-----EEeccCccEEEEEeecceEEecCcceecCCC---------------CCCCcEEEEEee
Confidence            99999988765544332     2334455667778889999999999999642               167899999999


Q ss_pred             cCceEeeeeEecCCCceeeeeccccEEEEeEEEECCCCCCCCCceeecCcccEEEEceEEecCCCcEEeCCCceeEEEEe
Q 040748          329 SNLTVQRLRIKDSPQFHFRFDNCKNVHIESIHITAPALSPNTDGIHIENTNGVEIYNSVISNGDDCVSIGSGCYDVDIRN  408 (584)
Q Consensus       329 ~nvtI~gvti~ns~~~~I~i~~s~nV~I~nv~I~~~~~~~ntDGI~i~~S~nV~I~n~~i~~gDDgIai~sgs~NV~I~N  408 (584)
                      +|++|+|++++|++.|++.+..|++++|+|++|.++ ..+|+||||+.++ +|+|+||+|.++||||+++++++||+|+|
T Consensus       136 ~n~~i~git~~nsp~~~i~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~s-nv~I~n~~i~~gDDcIaiks~s~nI~i~n  213 (422)
T d1rmga_         136 THFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVES  213 (422)
T ss_dssp             EEEEEEEEEEECCSSCSEEEEEEEEEEEEEEEEECC-SSTTCCSEEEEEE-EEEEEEEEEESSSEEEEEEEEEEEEEEEE
T ss_pred             eeeEEECcEecCCCceEEEEeccccEEEEeeEEcCC-CCCccceEeeccc-EEEEEeeEEEcCCCccccCCCCccEEEEe
Confidence            999999999999999999999999999999999986 4479999999765 89999999999999999999999999999


Q ss_pred             cccCCCCcceeeccCCCCCCCcEEeEEEEeeEEecCCceEEEEeecCCCCeEEeEEEEceEEcCCcccEEEEEeecCCCC
Q 040748          409 ITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSNNGVRIKTWQGGSGAVSGITFSNIHMNNVRNPIIIDQYYCLTKD  488 (584)
Q Consensus       409 c~~~~g~GI~IGS~g~~~~~~~v~nI~I~Nit~~~s~~GI~Iks~~g~~G~V~NItf~NI~i~~v~~~I~I~~~y~~~~~  488 (584)
                      ++|..+||++||+++.   ...++||+|+||++.++.+|++||++ ++.|.|+||+|+||+|+++.++|.|+++|+....
T Consensus       214 ~~c~~g~GisiGs~g~---~~~V~nV~v~n~~~~~s~~g~~ik~~-~g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~  289 (422)
T d1rmga_         214 IYCNWSGGCAMGSLGA---DTDVTDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA  289 (422)
T ss_dssp             EEEESSSEEEEEEECT---TEEEEEEEEEEEEEESSSCSEEEEEB-BCCEEEEEEEEEEEEEEEESCSEEEETBCTTSCC
T ss_pred             eEEccccceeEeeccC---CCCEEEEEEEeEEEeCCCceEEEEEc-CCCceecceEEEEEEEecccccEEEecccCCCCC
Confidence            9999999999999874   46799999999999999999999986 4568999999999999999999999999987544


Q ss_pred             CCCCCCCeeEEeEEEEeEEEeecC--CCCCeEEecCCCCceecEEEEeEEEEcCCCCccccceeecceecCCccccCCcc
Q 040748          489 CTNKTSAVYVSDILYSNIKGTYDI--RSPPMHFACSDTVPCTNLTLSEVELLPAKGDLVSDPFCWNAYGDLPTLTIPPVS  566 (584)
Q Consensus       489 ~~~~~~~~~I~nItf~NI~gt~~~--~~~~i~i~~~~~~~~~nItf~NI~i~~~~g~~~~~~~c~nv~G~~~~~t~~~~~  566 (584)
                      +  ......|+||+|+||+++...  ...+++|.|++..+|+||+|+||.|+...|+. +...|+|++|..        -
T Consensus       290 ~--~~~~v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g~~-~~~~C~na~G~~--------~  358 (422)
T d1rmga_         290 V--AGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSS-ELYLCRSAYGSG--------Y  358 (422)
T ss_dssp             B--SSSCCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSSSC-EEEEEESEEEES--------T
T ss_pred             C--CCCCeEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCCCCC-cceEEECceeeE--------E
Confidence            3  234678999999999998642  23579999999999999999999999988864 457999999986        6


Q ss_pred             ccCcCCC
Q 040748          567 CLLEGIP  573 (584)
Q Consensus       567 ~~~~~~~  573 (584)
                      ||.+|..
T Consensus       359 ~l~~~~~  365 (422)
T d1rmga_         359 CLKDSSS  365 (422)
T ss_dssp             TCBCCSS
T ss_pred             eecCCCC
Confidence            9888774
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure