Citrus Sinensis ID: 040749

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640---
Protein Sequence
MEGGRRGGGEIIMEEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEHL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHccccHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHcccccEHHHccccEEEEccccccHHHHHHHHHcccccccccccEcccccccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcHHEcccccHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
meggrrgggeiimeeenenfapsspqEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIreldtpisETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAaldgldfdelgvsDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVkergsqssESIQQMIDLLNKFKQVAGMEitnvlddpivpkmlgkslslvipheflcpitleimrdpviiasgqtfERESVQKWfdsnhrtcpktrqTLAHLSIAPNYALKNLILQWCEknnfklpkkddsetsecTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLskenpenriliadcgaipplvqllpypdskiLEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDenkitiglsdgipplvdllqngtirgkKDAVTALFNLSLNQANKARAIDAGIVLPLMNlleernlgMVDEALSILLLLAthpegrhkigqLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEHL
Flexible Loop (DISEMBL)
meggrrgggeiIMEEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLrrakrrtdtqdIELAMDMMVVFSKNEDRNADIAIVERLAKKinlhttedlkyeTIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVeqlsssklevqKEAVRKirllskenpenriLIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLqlisksehl
Low Complexity Region (SEG)
meggrrgggeiimeeenenFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMaalcnlkkalvvakkllklcnEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEHL
Disordered region (IsUnstruct)
******************************VIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVK**********QQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF******************************************IRLL*****ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS*********AAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE***********************
Disordered Region (DISOPRED)
*****************************NVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRE**********AALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDM**********************KINLHTTEDLKYETIA******************MIDLLNKFKQVAG**********************VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEI*******************RKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK****
Disordered Region (DISEMBL)
MEGGRRGGGEIIMEEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVK********SIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLP***************EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEHL
Disordered Region (DISPRO)
*********EII*EEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEI*****************SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPK************QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGGRRGGGEIIMEEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	643	2.2.26 [Sep-21-2011]
Q681N2	660	U-box domain-containing p	yes	no	0.945	0.921	0.659	0.0
Q9SNC6	660	U-box domain-containing p	no	no	0.954	0.930	0.454	1e-151
Q5VRH9	611	U-box domain-containing p	no	no	0.917	0.965	0.437	1e-135
Q9ZV31	654	U-box domain-containing p	no	no	0.939	0.923	0.430	1e-128
Q8VZ40	632	U-box domain-containing p	no	no	0.895	0.911	0.413	1e-123
Q0IMG9	694	E3 ubiquitin-protein liga	no	no	0.827	0.766	0.442	1e-120
A2ZLU6	694	Protein spotted leaf 11 O	N/A	no	0.827	0.766	0.442	1e-120
Q9C9A6	628	U-box domain-containing p	no	no	0.880	0.901	0.382	1e-102
Q8GUG9	612	U-box domain-containing p	no	no	0.884	0.929	0.389	2e-98
Q9C7R6	729	U-box domain-containing p	no	no	0.836	0.737	0.349	2e-71

>sp|Q681N2|PUB15_ARATH U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2

 Score =  806 bits (2083), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/613 (65%), Positives = 521/613 (84%), Gaps = 5/613 (0%)

Query: 31  VIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCN 90
           ++ +++S +E + Q+  YRRTQ+KEC+ LVRR+K+L+P +DEIR  ++P   +    L  
Sbjct: 53  LVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESP---SCKHFLNR 109

Query: 91  LKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVK 150
           L+K  + AKKLL+ C+ GSKIY+ALD E ++ RFH++ EKL+  L    FDEL +S + K
Sbjct: 110 LRKVFLAAKKLLETCSNGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMISGDAK 169

Query: 151 EQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDL 210
           ++++ +C QL++AKRRTDTQDIELA+DMMVVFSK + RNAD AI+ERLAKK+ L T +DL
Sbjct: 170 DEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQTIDDL 229

Query: 211 KYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLV 270
           K ETIAI++L++++G  + E+ Q +I+LLNKFK++ G+E T++L  P++ K + KS SL+
Sbjct: 230 KTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKSTSLI 289

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
           +PHEFLCPITLEIM DPVIIA+GQT+E+ES+QKWFD+ H+TCPKTRQ L HLS+APN+AL
Sbjct: 290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNFAL 349

Query: 331 KNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLS 390
           KNLI+QWCEKNNFK+P+K+ S  S+   EQK+E+  LVE LSSS+LE Q+ +V+++RLL+
Sbjct: 350 KNLIMQWCEKNNFKIPEKEVSPDSQ--NEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLA 407

Query: 391 KENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAI 450
           +ENPENR+LIA+ GAIP LVQLL YPDS I E+AVT +LNLSIDE NK+LI+ +GAIP I
Sbjct: 408 RENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIPNI 467

Query: 451 IEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTAL 510
           IEIL++G+ EARENSAAALFSLSMLDENK+TIGLS+GIPPLVDLLQ+GT+RGKKDA+TAL
Sbjct: 468 IEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALTAL 527

Query: 511 FNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFI 570
           FNLSLN ANK RAIDAGIV PL+NLL+++NLGM+DEALSILLLLA+HPEGR  IGQLSFI
Sbjct: 528 FNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQLSFI 587

Query: 571 ETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKA 630
           ETLVE+IR+GTPKNKECAT+VLLELG+NNSSFILAALQ+GVYE+L+++T  GT+RAQRKA
Sbjct: 588 ETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQRKA 647

Query: 631 NALLQLISKSEHL 643
           NAL+QLISKSE +
Sbjct: 648 NALIQLISKSEQI 660

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  535 bits (1378), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/627 (45%), Positives = 402/627 (64%), Gaps = 13/627 (2%)

Query: 26  QEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNM 85
           +E  +  Q ++  +  +A + DYR T KK CY L RR+KLL+P+ +EIRE + PISE  +
Sbjct: 3   EEKASAAQSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTL 62

Query: 86  AALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGV 145
             L NLK+A+  AK  LK C++GSKIYL ++ E V  +   V  KL  +L  + ++EL +
Sbjct: 63  KTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDI 122

Query: 146 SDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLH 205
           SDEV+EQVEL+  Q RRAK R D  D EL  D+  + +K+ D +A   ++ER+AKK++L 
Sbjct: 123 SDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDAYQPVLERVAKKLHLM 182

Query: 206 TTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIV--PKML 263
              DL  E++A+  +V   G    E+I++M  +L   K     E  N  +  +    +  
Sbjct: 183 EIPDLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSN 242

Query: 264 GKSLSL------VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317
           G++ +       VIP +F CPI+LE+MRDPVI++SGQT+ER  ++KW +  H TCPKT+Q
Sbjct: 243 GQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQ 302

Query: 318 TLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDS-----ETSECTAEQKEEIVSLVEQLS 372
            L   ++ PNY L++LI QWCE N+ + PK   S      +S  +  +  +I  L+ +L+
Sbjct: 303 ALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLA 362

Query: 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432
               E Q+ A  +IRLL+K N +NR+ IA+ GAIP LV LL  PDS+I EH+VTA+LNLS
Sbjct: 363 YGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLS 422

Query: 433 IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV 492
           I E+NK  I   GAIP I+++L+ GS EAREN+AA LFSLS++DENK+TIG    IPPLV
Sbjct: 423 ICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLV 482

Query: 493 DLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
            LL  GT RGKKDA TALFNL + Q NK +AI AG++  L  LL E   GMVDEAL+IL 
Sbjct: 483 VLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILA 542

Query: 553 LLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVY 612
           +L++HPEG+  IG    + +LVE+IR G+P+N+E A AVL+ L + +   ++ A + G+ 
Sbjct: 543 ILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLM 602

Query: 613 EHLIQLTEGGTSRAQRKANALLQLISK 639
             LI L   GT R +RKA  LL+ IS+
Sbjct: 603 GPLIDLAGNGTDRGKRKAAQLLERISR 629

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  481 bits (1238), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/606 (43%), Positives = 383/606 (63%), Gaps = 16/606 (2%)

Query: 40  ESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAK 99
           + +A L + R   ++ C  L RR++LL PL+D +    +  S T +A       AL  A+
Sbjct: 7   DEIAALPEPRGPLRRPCADLSRRVRLLAPLLDHLPASSSSSSSTPLA------DALGAAR 60

Query: 100 KLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQ 159
            LL+   +GSKI  A+  +  +  F  V  ++  ALD L ++   +  EV+EQV L+  Q
Sbjct: 61  DLLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQ 120

Query: 160 LRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRN 219
            +RA  RTD  D +L+MD+    + N    +D A++ R++ K+ LHT  D+K E+IA+ N
Sbjct: 121 FQRASTRTDPPDTQLSMDLAWALTDNP---SDPALLTRISHKLQLHTMADMKNESIALHN 177

Query: 220 LVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLG-KSLSLVIPHEFLCP 278
           +V     +    + QM  LL K K     E  +  +D +  +    K  S +IP EF CP
Sbjct: 178 MVISTAGEPDGCVDQMSSLLKKLKDCVVTE--DHANDALTTRSASIKHRSPIIPDEFRCP 235

Query: 279 ITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWC 338
           I+LE+M+DPVI++SGQT+ER  +QKW DS H+TCPKT+Q L+H S+ PN+ LK+LI QWC
Sbjct: 236 ISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWC 295

Query: 339 EKNNFKLPKKD----DSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP 394
           E N  +LPK      D + ++ +      +VSL+ +L S   + Q+ A  +IRLL+K N 
Sbjct: 296 EANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNV 355

Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
            NRI IA+ GAIP LV LL   D +  EHAVTA+LNLSI E+NK  I    AIP I+E+L
Sbjct: 356 NNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVL 415

Query: 455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514
           ++GS E REN+AA LFSLS++DENK+TIG +  IPPL++LL +G+ RGKKDA TA+FNL 
Sbjct: 416 KTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLC 475

Query: 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574
           + Q NK RA+ AGIV+ LMN L +   GM+DEALS+L +LA +PEG+  I +   I  LV
Sbjct: 476 IYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLV 535

Query: 575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALL 634
           E I+ G+P+N+E A A+L  L + ++   LAA   GV + L +L+E GT RA+RKA+++L
Sbjct: 536 EVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSIL 595

Query: 635 QLISKS 640
           +L+ ++
Sbjct: 596 ELMHQA 601

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  460 bits (1184), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 270/627 (43%), Positives = 398/627 (63%), Gaps = 23/627 (3%)

Query: 33  QEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLK 92
           Q ++ +I  +A + D     KK C  L RR+ LLLP+++EIR+     SE  + AL ++K
Sbjct: 11  QTLIDSINEIASISDSVTPMKKHCANLSRRLSLLLPMLEEIRDNQESSSEV-VNALLSVK 69

Query: 93  KALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQ 152
           ++L+ AK LL   +  SKIYL L+ + V+++F  V   L  AL  + ++ L +SDE+KEQ
Sbjct: 70  QSLLHAKDLLSFVSHVSKIYLVLERDQVMVKFQKVTSLLEQALSIIPYENLEISDELKEQ 129

Query: 153 VELMCLQLRRA--KRRTDTQDIELAMDMMVVFS-KNEDRNADIAIVERLAKKINLHTTED 209
           VEL+ +QLRR+  KR  D  D EL  D++ ++S +     +D+  V R+A+K+ L T  D
Sbjct: 130 VELVLVQLRRSLGKRGGDVYDDELYKDVLSLYSGRGSVMESDM--VRRVAEKLQLMTITD 187

Query: 210 LKYETIAIRNLVKERGSQS-SESIQQMIDLLNKFKQVAGMEITNVLDDPI-----VPKML 263
           L  E++A+ ++V   G     ES ++M  +L K K        N+ D P+     +PK  
Sbjct: 188 LTQESLALLDMVSSSGGDDPGESFEKMSMVLKKIKDFVQTYNPNLDDAPLRLKSSLPKSR 247

Query: 264 GKSLSLVIP-HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322
                ++IP  EF CPI+LE+M DPVI++SGQT+ERE ++KW +  H TCPKT++TL   
Sbjct: 248 DDDRDMLIPPEEFRCPISLELMTDPVIVSSGQTYERECIKKWLEGGHLTCPKTQETLTSD 307

Query: 323 SIAPNYALKNLILQWCEKNNFKLPKKDD--------SETSECTAEQKEEIVSLVEQLSSS 374
            + PNY L++LI QWCE N  + PK+ +        S +S    ++  +I  L+ +L+S 
Sbjct: 308 IMTPNYVLRSLIAQWCESNGIEPPKRPNISQPSSKASSSSSAPDDEHNKIEELLLKLTSQ 367

Query: 375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSI 433
           + E ++ A  +IRLL+K+N  NR+ IA  GAIP LV LL    DS+  EHAVT++LNLSI
Sbjct: 368 QPEDRRSAAGEIRLLAKQNNHNRVAIAASGAIPLLVNLLTISNDSRTQEHAVTSILNLSI 427

Query: 434 DESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV 492
            + NK +++   GA+P I+ +LQ GS EAREN+AA LFSLS++DENK+TIG +  IPPLV
Sbjct: 428 CQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKVTIGAAGAIPPLV 487

Query: 493 DLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
            LL  G+ RGKKDA TALFNL + Q NK +A+ AG+V  LM LL E   GMVDE+LSIL 
Sbjct: 488 TLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPESGMVDESLSILA 547

Query: 553 LLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVY 612
           +L++HP+G+ ++G    +  LV++IR G+P+NKE + AVL+ L + N   ++ A + G+ 
Sbjct: 548 ILSSHPDGKSEVGAADAVPVLVDFIRSGSPRNKENSAAVLVHLCSWNQQHLIEAQKLGIM 607

Query: 613 EHLIQLTEGGTSRAQRKANALLQLISK 639
           + LI++ E GT R +RKA  LL   S+
Sbjct: 608 DLLIEMAENGTDRGKRKAAQLLNRFSR 634

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  444 bits (1141), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/592 (41%), Positives = 375/592 (63%), Gaps = 16/592 (2%)

Query: 59  LVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDME 118
           LVRR+ LL P  +E+ +++  + +  +     ++ AL  + +L +  N GSK++   D +
Sbjct: 40  LVRRITLLSPFFEELIDVNVELKKDQITGFEAMRIALDSSLELFRSVNGGSKLFQLFDRD 99

Query: 119 IVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDM 178
            ++ +F  +  ++ AAL  + ++++ VS+EV+EQV+L+  Q +RAK R +  D++L+ D+
Sbjct: 100 SLVEKFRDMTVEIEAALSQIPYEKIEVSEEVREQVQLLHFQFKRAKERWEESDLQLSHDL 159

Query: 179 MVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDL 238
            +        + D  I++RL++++ L T ++LK E+ AI            +  ++M  L
Sbjct: 160 AMA---ENVMDPDPIILKRLSQELQLTTIDELKKESHAIHEYFLSYDGDPDDCFERMSSL 216

Query: 239 LNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFER 298
           L        ME ++  D     +++ +  S VIP  F CPI+LE+M+DPVI+++GQT+ER
Sbjct: 217 LKNLVDFVTMESSDP-DPSTGSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYER 275

Query: 299 ESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLP---------KKD 349
            S+QKW D+ H+TCPK+++TL H  + PNY LK+LI  WCE N  +LP         K  
Sbjct: 276 SSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIELPQNQGSCRTTKIG 335

Query: 350 DSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPL 409
            S +S+C    +  ++SL+E+L++   E Q+ A  ++RLL+K N +NR+ IA+ GAIP L
Sbjct: 336 GSSSSDC---DRTFVLSLLEKLANGTTEQQRAAAGELRLLAKRNVDNRVCIAEAGAIPLL 392

Query: 410 VQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAAL 469
           V+LL  PD +  EH+VTA+LNLSI+E NK  I   GAI  I+E+L++GS EAREN+AA L
Sbjct: 393 VELLSSPDPRTQEHSVTALLNLSINEGNKGAIVDAGAITDIVEVLKNGSMEARENAAATL 452

Query: 470 FSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIV 529
           FSLS++DENK+ IG +  I  L+ LL+ GT RGKKDA TA+FNL + Q NK+RA+  GIV
Sbjct: 453 FSLSVIDENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIV 512

Query: 530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589
            PL  LL++   GMVDEAL+IL +L+T+ EG+  I +   I  LVE IR G+P+N+E A 
Sbjct: 513 DPLTRLLKDAGGGMVDEALAILAILSTNQEGKTAIAEAESIPVLVEIIRTGSPRNRENAA 572

Query: 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641
           A+L  L   N   +  A + G    L +LTE GT RA+RKA +LL+LI ++E
Sbjct: 573 AILWYLCIGNIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQTE 624

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0IMG9|SL11_ORYSJ E3 ubiquitin-protein ligase SPL11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/542 (44%), Positives = 348/542 (64%), Gaps = 10/542 (1%)

Query: 107 EGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRR 166
           EGS+I L L+ + V+ +F  V  +L  AL  + ++EL +SDEV+EQVEL+  QL+RAK R
Sbjct: 106 EGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKER 165

Query: 167 TDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGS 226
            D  D E   D++ V+ KN D +A++AI+ RL++K++L T  DL  E++A+  +V   G 
Sbjct: 166 IDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGG 225

Query: 227 QS-SESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKML---GKSLSLVIPHEFLCPITLE 282
           Q   E I++M  LL K K     +  + +  P+  ++L   G S  + IP EF CPI+LE
Sbjct: 226 QDPGEHIERMSMLLKKIKDFVQTQNPD-MGPPMASRVLDSNGDSRPITIPDEFRCPISLE 284

Query: 283 IMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342
           +M+DPVI+++GQT+ER  ++KW  S H TCP T+Q ++  ++ PNY L++LI QWCE N 
Sbjct: 285 LMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNG 344

Query: 343 FKLPKKD---DSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRIL 399
            + PK+    +  T  C++ ++  I +L+ +L S   E Q+ A  ++RLL+K N  NRI 
Sbjct: 345 MEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRIC 404

Query: 400 IADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGST 459
           IA+ GAIP L+ LL   D +  EHAVTA+LNLSI E NK  I   GA+P+I+ +L++GS 
Sbjct: 405 IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSM 464

Query: 460 EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519
           EAREN+AA LFSLS++DE K+TIG    IP LV LL  G+ RGKKDA  ALFNL + Q N
Sbjct: 465 EARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGN 524

Query: 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579
           K RAI AG+V  +M L+      ++DEA++IL +L++HPEG+  IG    +  LVE I  
Sbjct: 525 KGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGS 584

Query: 580 GTPKNKECATAVLLEL--GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637
           GTP+N+E A AV+L L  G ++   +  A + G+   L +L   GT R +RKA  LL+ +
Sbjct: 585 GTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644

Query: 638 SK 639
           S+
Sbjct: 645 SR 646

E3 ubiquitin-protein ligase that negatively regulates programmed cell death and disease resistance. Participates in flowering time control by mediating ubiquitination and subsequent proteasomal degradation of SPIN1.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2ZLU6|SL11_ORYSI Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2

 Score =  432 bits (1112), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/542 (44%), Positives = 348/542 (64%), Gaps = 10/542 (1%)

Query: 107 EGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRR 166
           EGS+I L L+ + V+ +F  V  +L  AL  + ++EL +SDEV+EQVEL+  QL+RAK R
Sbjct: 106 EGSRISLVLERDSVMKKFQGVILQLEQALCDIPYNELDISDEVREQVELVHAQLKRAKER 165

Query: 167 TDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGS 226
            D  D E   D++ V+ KN D +A++AI+ RL++K++L T  DL  E++A+  +V   G 
Sbjct: 166 IDMPDDEFYNDLLSVYDKNYDPSAELAILGRLSEKLHLMTITDLTQESLALHEMVASGGG 225

Query: 227 QS-SESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKML---GKSLSLVIPHEFLCPITLE 282
           Q   E I++M  LL K K     +  + +  P+  ++L   G S  + IP EF CPI+LE
Sbjct: 226 QDPGEHIERMSMLLKKIKDFVQTQNPD-MGPPMASRVLDSNGDSRPITIPDEFRCPISLE 284

Query: 283 IMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN 342
           +M+DPVI+++GQT+ER  ++KW  S H TCP T+Q ++  ++ PNY L++LI QWCE N 
Sbjct: 285 LMKDPVIVSTGQTYERACIEKWIASGHHTCPTTQQKMSTSALTPNYVLRSLISQWCETNG 344

Query: 343 FKLPKKD---DSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRIL 399
            + PK+    +  T  C++ ++  I +L+ +L S   E Q+ A  ++RLL+K N  NRI 
Sbjct: 345 MEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRIC 404

Query: 400 IADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGST 459
           IA+ GAIP L+ LL   D +  EHAVTA+LNLSI E NK  I   GA+P+I+ +L++GS 
Sbjct: 405 IAEAGAIPLLLSLLSSSDLRTQEHAVTALLNLSIHEDNKASIISSGAVPSIVHVLKNGSM 464

Query: 460 EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519
           EAREN+AA LFSLS++DE K+TIG    IP LV LL  G+ RGKKDA  ALFNL + Q N
Sbjct: 465 EARENAAATLFSLSVIDEYKVTIGGMGAIPALVVLLGEGSQRGKKDAAAALFNLCIYQGN 524

Query: 520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579
           K RAI AG+V  +M L+      ++DEA++IL +L++HPEG+  IG    +  LVE I  
Sbjct: 525 KGRAIRAGLVPLIMGLVTNPTGALMDEAMAILSILSSHPEGKAAIGAAEPVPVLVEMIGS 584

Query: 580 GTPKNKECATAVLLEL--GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637
           GTP+N+E A AV+L L  G ++   +  A + G+   L +L   GT R +RKA  LL+ +
Sbjct: 585 GTPRNRENAAAVMLHLCSGEHHLVHLARAQECGIMVPLRELALNGTDRGKRKAVQLLERM 644

Query: 638 SK 639
           S+
Sbjct: 645 SR 646

Defense related protein that negatively regulates programmed cell death. In vitro, possesses E3 ubiquitin ligase activity.

Oryza sativa subsp. indica (taxid: 39946)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  372 bits (955), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 237/619 (38%), Positives = 359/619 (57%), Gaps = 53/619 (8%)

Query: 53  KKECYGLVRRMKLLLPLIDEIRELDTPISETNMAAL-----CNLKKALVVAKKLLKLCNE 107
           KK+C  L RR+ LL  LI+EIR+  +P SE++ ++      C+    LVV  +  K    
Sbjct: 29  KKDCSDLARRVGLLTHLIEEIRD-SSPPSESDASSSLNSHECDWWSDLVVGLQAAKRLLS 87

Query: 108 GSKIYLALD-----MEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRR 162
            +  + A +      + +  +F  V  KL  AL  L +D   +SDEV+EQVEL  LQLRR
Sbjct: 88  SATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLTYDRYDISDEVREQVELARLQLRR 147

Query: 163 AKRRTDT-QDIELAMDMMVVFSKNEDRNADI--------AIVERLAKKINLHTTEDLKYE 213
           A +R  +    + +  +     K+   N  +          V  L+ +    +    K  
Sbjct: 148 AMQRYGSLNSKKFSSGLSEPMEKDASSNRKVIEKLESIPETVHSLSDEKKFESPPPWKSS 207

Query: 214 TIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPH 273
           ++++   + + G    E +++ +              T   DD        KS +L IP 
Sbjct: 208 SVSLAFFLSKDGDD--ERLEKAV--------------TENSDDS------QKSDNLTIPE 245

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNL 333
           +FLCPI+LE+M+DP I+++GQT+ER  +Q+W D  + +CPKT+Q L + ++ PNY L++L
Sbjct: 246 DFLCPISLELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSL 305

Query: 334 ILQWCEKNNFKLP--------KKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRK 385
           I QWC K+N + P        K  D    + + +    I +LV +LSS  +E ++ AV +
Sbjct: 306 ISQWCTKHNIEQPGGYMNGRTKNSDGSFRDLSGDM-SAIRALVCKLSSQSIEDRRTAVSE 364

Query: 386 IRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQ 444
           IR LSK + +NRILIA+ GAIP LV+LL    D++  E+AVT +LNLSI E NK LI   
Sbjct: 365 IRSLSKRSTDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLA 424

Query: 445 GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKK 504
           GA+ +I+ +L++GS EAREN+AA LFSLS+ DENKI IG S  I  LVDLLQ G++RGKK
Sbjct: 425 GAVTSIVLVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKK 484

Query: 505 DAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNL-GMVDEALSILLLLATHPEGRHK 563
           DA TALFNL + Q NK RA+ AGIV PL+ +L + +   M DEAL+IL +LA++   +  
Sbjct: 485 DAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTA 544

Query: 564 IGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT 623
           I + + I  L++ +++  P+N+E A A+LL L   ++  +++  + G    L++L+  GT
Sbjct: 545 ILRANAIPPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGT 604

Query: 624 SRAQRKANALLQLISKSEH 642
            RA+RKAN+LL+L+ KS  
Sbjct: 605 ERAKRKANSLLELLRKSSR 623

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 349/601 (58%), Gaps = 32/601 (5%)

Query: 53  KKECYGLVRRMKLLLPLIDEIRELDTPI-----SETNMAALCNLKKALVVAKKLLKLCNE 107
           KK+C  L RR+ LL  L++EIR+  TPI     S +      +L   L  AK+LL     
Sbjct: 29  KKDCADLTRRVCLLTHLLEEIRD-STPIDSAASSSSENDWWSDLVVGLQAAKRLLSTARF 87

Query: 108 GSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRT 167
            ++       + +  +F  V  KL  AL  L +D   +SDEV EQVEL   QLRRA +R 
Sbjct: 88  QARDSSDGAAKRISFQFQCVTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRAMQRY 147

Query: 168 DTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQ 227
            + +   +       S+  +R+    +++  A++     +E L +         +E+ S 
Sbjct: 148 GSLN---SNKFSSALSEPMERDGFSNVIKIKAEEKLESVSETLHFGE------EEEKQSS 198

Query: 228 SSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGK-------SLSLVIPHEFLCPIT 280
                   I L     + A    T+ LD     KM+ K       S  L IP +FLCP++
Sbjct: 199 PPLRRSSSISLAYYLSKDAD---TDRLD-----KMVNKNTDESKKSDKLTIPVDFLCPVS 250

Query: 281 LEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEK 340
           LE+M+DPVI+A+GQT+ER  +Q+W D  + TCPKT+Q L + ++ PNY L++LI +WC +
Sbjct: 251 LELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAE 310

Query: 341 NNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILI 400
           +N + P    +  ++ + +    I +LV++LSS   E ++ AV +IR LSK + +NRILI
Sbjct: 311 HNIEQPAGYINGRTKNSGDM-SVIRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILI 369

Query: 401 ADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTE 460
           A+ GAIP LV LL   D    E+A+T VLNLSI E+NK LI   GA+ +I+++L++G+ E
Sbjct: 370 AEAGAIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTME 429

Query: 461 ARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
           AREN+AA LFSLS+ DENKI IG S  IP LVDLL+NGT RGKKDA TALFNL +   NK
Sbjct: 430 ARENAAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNK 489

Query: 521 ARAIDAGIVLPLMNLLEERNLG-MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579
            RA+ AGIV  L+ +L +     MVDEAL+IL +LA + + +  I + + +  L+  ++ 
Sbjct: 490 GRAVRAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQT 549

Query: 580 GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639
              +N+E A A+LL L   ++  ++   + G    L+ L++ GT R +RKA +LL+L+ K
Sbjct: 550 DQTRNRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRK 609

Query: 640 S 640
           +
Sbjct: 610 A 610

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C7R6|PUB17_ARATH U-box domain-containing protein 17 OS=Arabidopsis thaliana GN=PUB17 PE=2 SV=1

 Score =  271 bits (692), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 203/581 (34%), Positives = 310/581 (53%), Gaps = 43/581 (7%)

Query: 98  AKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMC 157
           +K L+  C + SK++L L    +   FH + +++S  LD L  ++LG+SD+++EQ+EL+ 
Sbjct: 117 SKILVDYCAQSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQ 176

Query: 158 LQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERL--AKKINLHTTEDLKYETI 215
            Q R+A+   D  D  L           E+     ++  R+   +K+ +  ++  + E  
Sbjct: 177 RQSRKARLYIDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEI- 235

Query: 216 AIRNLVKERGSQSSESIQQMIDLLNKFKQVA-------------GME--ITNVLDDP--- 257
                ++E+       ++    ++N F  +              GME  I N    P   
Sbjct: 236 ---EFLEEQIVNHDGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKG 292

Query: 258 IVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317
            V + +G +  + +P +F+CPI+L++M DPVII++GQT++R S+ +W +  H TCPKT Q
Sbjct: 293 FVAQEIGDTF-ITVPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQ 351

Query: 318 TLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAE----------QKEEIVSL 367
            L    I PN ALKNLI+QWC  +      +     +E  A            K  +  L
Sbjct: 352 MLMDSRIVPNRALKNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSIL 411

Query: 368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTA 427
           ++ L+      Q  A R+IRLL+K   ENR  IA+ GAIP L +LL   ++   E++VTA
Sbjct: 412 IKYLADGSQAAQTVAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTA 471

Query: 428 VLNLSIDESNKRLIAQQG-AIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGLS 485
           +LNLSI E NK  I ++G  + +I+ +L SG T EA+EN+AA LFSLS + E K  I + 
Sbjct: 472 MLNLSIYEKNKSRIMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIV 531

Query: 486 D-GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMV 544
           D  +  L  LLQNGT RGKKDAVTAL+NLS +  N +R I+ G V  L+  L  +N G+ 
Sbjct: 532 DQCVEALALLLQNGTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGAL--KNEGVA 589

Query: 545 DEALSILLLLATHPEGRHKIGQL-SFIETLVEYIREGTPKNKECATAVLLELGANNSSFI 603
           +EA   L LL     G   IG+  S +  L+  +R GTP+ KE A A LLEL  +  + +
Sbjct: 590 EEAAGALALLVRQSLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAV 649

Query: 604 L-AALQYGVYEHLIQ-LTEGGTSRAQRKANALLQLISKSEH 642
               L+      L+Q L   GT RA+RKA +L ++  + E+
Sbjct: 650 AEKVLRAPAIAGLLQTLLFTGTKRARRKAASLARVFQRREN 690

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
224065687	639	predicted protein [Populus trichocarpa]	0.965	0.971	0.743	0.0
255539222	654	Spotted leaf protein, putative [Ricinus	0.965	0.949	0.716	0.0
297744493	677	unnamed protein product [Vitis vinifera]	0.954	0.906	0.680	0.0
356566915	632	PREDICTED: U-box domain-containing prote	0.981	0.998	0.662	0.0
225428265	641	PREDICTED: U-box domain-containing prote	0.954	0.957	0.680	0.0
297791827	660	binding protein [Arabidopsis lyrata subs	0.948	0.924	0.673	0.0
356530052	635	PREDICTED: U-box domain-containing prote	0.979	0.992	0.678	0.0
359492230	649	PREDICTED: U-box domain-containing prote	0.951	0.942	0.676	0.0
302142652	684	unnamed protein product [Vitis vinifera]	0.945	0.888	0.679	0.0
147817127	1049	hypothetical protein VITISV_030646 [Viti	0.950	0.582	0.675	0.0

>gi|224065687|ref|XP_002301921.1| predicted protein [Populus trichocarpa] gi|222843647|gb|EEE81194.1| predicted protein [Populus trichocarpa]

 Score =  967 bits (2501), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 463/623 (74%), Positives = 554/623 (88%), Gaps = 2/623 (0%)

Query: 23  SSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISE 82
           SSP+E  ++ QE+LS IESVA+LGDYRR+ KKECYGLVRRMKLLLP ++EI++ D PIS+
Sbjct: 17  SSPREEIDIAQEILSVIESVARLGDYRRSHKKECYGLVRRMKLLLPFLEEIKDFDGPISD 76

Query: 83  TNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDE 142
             +A+L +LKKALV+AKKLL  CNEGSKIYL ++ E V++RFH V EKL  AL+ + FDE
Sbjct: 77  VGIASLSSLKKALVLAKKLLTTCNEGSKIYLVVESEAVMMRFHNVLEKLWKALEAVPFDE 136

Query: 143 LGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKI 202
             +SDEVKEQVELM +QLRRAKRRTDTQDIELAMDMMVV +K  DRNAD AI+ERLAKK+
Sbjct: 137 FEISDEVKEQVELMKVQLRRAKRRTDTQDIELAMDMMVVLTKKNDRNADRAIIERLAKKL 196

Query: 203 NLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKM 262
            L + EDL+ ET+A R+LVKERG+Q +ES QQMIDLLNKFKQ+ GME+T+VLDDP+VPKM
Sbjct: 197 ELLSVEDLEIETVATRSLVKERGNQVTESTQQMIDLLNKFKQIVGMEVTDVLDDPVVPKM 256

Query: 263 LGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322
           L KS SL+IPHEFLCPITLEIM DPVI+ASGQT+ERES+QKW DSNHRTCPKTR+TLAHL
Sbjct: 257 LKKSPSLIIPHEFLCPITLEIMTDPVIVASGQTYERESIQKWIDSNHRTCPKTRETLAHL 316

Query: 323 SIAPNYALKNLILQWCEKNNFKLPKKDDSETS--ECTAEQKEEIVSLVEQLSSSKLEVQK 380
           S+APNYALKNLILQWCE NNF+LPKK    +S  E ++E +E++ SLV+ LSSS+LEVQ+
Sbjct: 317 SLAPNYALKNLILQWCENNNFELPKKHVPASSDPETSSEHQEKVSSLVKDLSSSQLEVQR 376

Query: 381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440
            AV+KIR+LSKENPENRILIA+ G IPP+VQLL YPDSKILEHAVTA+LNLSIDE+NK L
Sbjct: 377 RAVKKIRMLSKENPENRILIANNGGIPPIVQLLSYPDSKILEHAVTALLNLSIDENNKSL 436

Query: 441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI 500
           I + GA+PAII +L SG+TEARENSAAALFSLSMLDENK+TIGLSDGIPPLVDLLQNGT+
Sbjct: 437 ITKGGAVPAIIGVLNSGTTEARENSAAALFSLSMLDENKVTIGLSDGIPPLVDLLQNGTV 496

Query: 501 RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG 560
           RGKKDA TALFNLSLN +NK RAIDAGIV PL++L+++RNLGMVDEALSI LLLA+HPEG
Sbjct: 497 RGKKDAATALFNLSLNHSNKGRAIDAGIVTPLLHLVKDRNLGMVDEALSIFLLLASHPEG 556

Query: 561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE 620
           R++IGQLSFIETLVE +++GTPKNKECAT+VLLELG+ NSSF+LAALQ+GVYE+L+++++
Sbjct: 557 RNEIGQLSFIETLVELMKDGTPKNKECATSVLLELGSTNSSFMLAALQFGVYENLVEISK 616

Query: 621 GGTSRAQRKANALLQLISKSEHL 643
            GT+RAQRKAN+LLQL+SK+EH+
Sbjct: 617 SGTNRAQRKANSLLQLMSKAEHI 639

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539222|ref|XP_002510676.1| Spotted leaf protein, putative [Ricinus communis] gi|223551377|gb|EEF52863.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  925 bits (2390), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/621 (71%), Positives = 541/621 (87%)

Query: 23  SSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISE 82
           SSP+E  +++Q++ + +ESVAQLGDYRR  +K+C+ LVRRMKLLLP ++E+R+LD P  +
Sbjct: 34  SSPREETDILQQISNLVESVAQLGDYRRAHRKDCFSLVRRMKLLLPFLEELRDLDAPSPD 93

Query: 83  TNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDE 142
             +  L +LKKA ++A+KLLKLCNEGSKI LA++ E V+++F  V +KL  AL+ + +DE
Sbjct: 94  KGITCLSSLKKAFILAEKLLKLCNEGSKINLAVESEAVMVKFRKVNDKLYQALNSVPYDE 153

Query: 143 LGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKI 202
           LG+SDEVKEQ+ELM +QL+RAK RTDTQDIELAMDMMVV SK +DRNAD AI+ERLAKK+
Sbjct: 154 LGISDEVKEQMELMRMQLKRAKGRTDTQDIELAMDMMVVLSKEDDRNADSAIIERLAKKL 213

Query: 203 NLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKM 262
            LHT EDL  ETIAIRNLVK+RG   SE+IQQ+IDLLNKF+Q+ GME+T+  D+P++ + 
Sbjct: 214 ELHTVEDLNNETIAIRNLVKQRGGHISENIQQIIDLLNKFQQIIGMEVTDFQDNPVMHRT 273

Query: 263 LGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL 322
           L K  SLVIPHEFLCPITLEIM DPVIIASGQT+ERES+QKWF SNHRTCPKTRQTLAHL
Sbjct: 274 LEKCPSLVIPHEFLCPITLEIMTDPVIIASGQTYERESIQKWFVSNHRTCPKTRQTLAHL 333

Query: 323 SIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEA 382
           S+APNYALKNLILQWCE+NNF L  K+ S +SE  ++  EEI+SLV  LSSS+LEVQ+++
Sbjct: 334 SVAPNYALKNLILQWCEENNFHLSTKNSSASSESFSDLSEEILSLVHDLSSSQLEVQRKS 393

Query: 383 VRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA 442
           V+KIR+LSKENPENRI IA+ G IPPLVQ+L YPDSKI EHAVTA+LNLSIDE+NKRLIA
Sbjct: 394 VKKIRMLSKENPENRIAIANHGGIPPLVQILSYPDSKIQEHAVTALLNLSIDETNKRLIA 453

Query: 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRG 502
           ++GA+PAIIE+L+SGS E RENSAAALFSLSMLDENK+TIGLSDGIPPLV+LL+NGT+RG
Sbjct: 454 REGAVPAIIEVLRSGSVEGRENSAAALFSLSMLDENKVTIGLSDGIPPLVNLLENGTVRG 513

Query: 503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH 562
           KKDA TALFNLSLN  NKARAIDAGI+ PL+ LLE+ NLGMVDEALSI LLL++HP+GR 
Sbjct: 514 KKDAATALFNLSLNHLNKARAIDAGIITPLLQLLEDINLGMVDEALSIFLLLSSHPDGRS 573

Query: 563 KIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG 622
            IGQLSFIETLVE+I++GTPKNKECAT+VLLELG+NNSSFILAALQ+GVYEHL+++   G
Sbjct: 574 AIGQLSFIETLVEFIKDGTPKNKECATSVLLELGSNNSSFILAALQFGVYEHLVEIANSG 633

Query: 623 TSRAQRKANALLQLISKSEHL 643
           T+RAQRKANAL+QL+SK+E +
Sbjct: 634 TNRAQRKANALMQLMSKTEQI 654

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744493|emb|CBI37755.3| unnamed protein product [Vitis vinifera]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/616 (68%), Positives = 517/616 (83%), Gaps = 2/616 (0%)

Query: 30  NVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTP-ISETNMAAL 88
           +VI EM+  IE+V     +RRTQ+KE   LVRR+KLL+PL++E+REL T  +S   +  L
Sbjct: 18  DVIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPLLEELRELGTAAVSGEALGCL 77

Query: 89  CNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDE 148
             LKKALV AKKLLK CN GSKIYLA + E V +RFHAV +KL+ ALD L +++LG+SDE
Sbjct: 78  ARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVYDKLNQALDDLPYNDLGISDE 137

Query: 149 VKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTE 208
           VKEQVELM +QL+RAKRRT+TQDIELAMD+MVVFSK +DRNAD AI+ERLA K+ L T  
Sbjct: 138 VKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDRNADTAILERLASKLELRTVA 197

Query: 209 DLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLS 268
           DLK ET+A+R LVKER   S+E+ QQ+++LL KFK++AGME ++VLD P++ + L K  S
Sbjct: 198 DLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGMEESSVLDGPVLSRNLQKCPS 257

Query: 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328
           LVIPHEFLCPI+LEIM DPVI+A+GQT+ERES+QKW DS+H TCPKT QTL HLS+APNY
Sbjct: 258 LVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSDHHTCPKTGQTLVHLSLAPNY 317

Query: 329 ALKNLILQWCEKNNFKLPKKDDSETSECTAEQ-KEEIVSLVEQLSSSKLEVQKEAVRKIR 387
           AL+NLILQWCEKN F+LP+KD    S  ++ Q K++I SLV+ LSSS+ +VQ++A+ KIR
Sbjct: 318 ALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSLVQNLSSSQPDVQRKAIMKIR 377

Query: 388 LLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAI 447
           +L+KENP+NRI IA+ G IPPLVQLL YPDSK+ EH VTA+LNLSIDE+NKRLIA++GAI
Sbjct: 378 MLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLSIDEANKRLIAREGAI 437

Query: 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507
           PAIIEILQ+G+ EARENSAAALFSLSMLDENK+ IG  +GIPPLV+LLQNGT RGKKDA 
Sbjct: 438 PAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNGIPPLVNLLQNGTTRGKKDAA 497

Query: 508 TALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL 567
           TALFNLSLNQ+NK+RAI AGI+  L++LLE++NLGM+DEALSILLLL +HPEG+ +IG+L
Sbjct: 498 TALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEALSILLLLVSHPEGQTEIGRL 557

Query: 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQ 627
           SFI TLVE +++GTPKNKECAT+VLLELG NNSSFILAALQYGVY+HL+++   GT+RAQ
Sbjct: 558 SFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAALQYGVYDHLVEIMRCGTNRAQ 617

Query: 628 RKANALLQLISKSEHL 643
           RKAN LLQ + K EH+
Sbjct: 618 RKANCLLQHMCKCEHI 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566915|ref|XP_003551670.1| PREDICTED: U-box domain-containing protein 15-like [Glycine max]

 Score =  848 bits (2190), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/632 (66%), Positives = 514/632 (81%), Gaps = 1/632 (0%)

Query: 13  MEEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDE 72
           MEEE +  +    +E  + ++E+   I+S+ Q G+YRRTQ+KE + LVRR KL+LPL +E
Sbjct: 1   MEEERDVSSDELSEEKYDPVEEIQRVIQSIVQFGEYRRTQRKESHNLVRRFKLMLPLWEE 60

Query: 73  IRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLS 132
           +R+L  P  E  +  L  +K  L+ AK LLKLC++GSKI+LAL+ E+V+I F  V +KLS
Sbjct: 61  LRDLPQPFPEIGVTWLSKVKDVLLFAKDLLKLCSQGSKIHLALETEVVMITFQKVYDKLS 120

Query: 133 AALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADI 192
            A   +  DE+G+SDEVKEQ+ELM +QL+RA+RRTDTQDIELAMDMMVVFS N+DRNAD 
Sbjct: 121 QAFGDVPCDEMGISDEVKEQLELMHVQLKRARRRTDTQDIELAMDMMVVFSDNDDRNADS 180

Query: 193 AIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITN 252
           AI+ERLAKK+ LH+ EDL  ET+AIRNL  ER  Q +ES Q++I LLNKFK++AGME T 
Sbjct: 181 AIIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQAESTQKIIYLLNKFKRIAGMEETG 240

Query: 253 VLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTC 312
           +LDDP  PKML +  SLVIPHEFLCPITLEIM DPVI+ SGQT+ERES++KWF SNH TC
Sbjct: 241 ILDDPAAPKMLERCTSLVIPHEFLCPITLEIMTDPVIVTSGQTYERESIKKWFQSNHNTC 300

Query: 313 PKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSE-CTAEQKEEIVSLVEQL 371
           PKTRQ L HLS+APN ALK+LI +WCE NNFKLPKK +S   E C  + KEEI +LVE L
Sbjct: 301 PKTRQPLEHLSLAPNRALKSLIEEWCENNNFKLPKKYNSSGPESCPIDSKEEIPALVESL 360

Query: 372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL 431
           SS  LE Q++AV KIR+LSKENPENR+L+A+ G IPPLVQLL YPDSKI EHAVTA+LNL
Sbjct: 361 SSIHLEEQRKAVEKIRMLSKENPENRVLVAEHGGIPPLVQLLSYPDSKIQEHAVTALLNL 420

Query: 432 SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPL 491
           SIDE NK LI+ +GAIPAIIE+L++GS  A+ENSAAALFSLSMLDE K  +G S+G PPL
Sbjct: 421 SIDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGYPPL 480

Query: 492 VDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSIL 551
           VDLL+NGTIRGKKDAVTALFNLS+N ANK RAI AGIV PL+ LL++RNLGM+DEALSIL
Sbjct: 481 VDLLRNGTIRGKKDAVTALFNLSINHANKGRAIRAGIVTPLLQLLKDRNLGMIDEALSIL 540

Query: 552 LLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV 611
           LLL ++ E R +IGQLSFIETLVE++REG+PKNKECA +VLLEL ++NSSF LAALQ+GV
Sbjct: 541 LLLVSNSEARQEIGQLSFIETLVEFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGV 600

Query: 612 YEHLIQLTEGGTSRAQRKANALLQLISKSEHL 643
           YE+L+++ + GT+RAQRKANA+L LIS+SE +
Sbjct: 601 YEYLMEIKQNGTNRAQRKANAILDLISRSEQI 632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428265|ref|XP_002279546.1| PREDICTED: U-box domain-containing protein 15 [Vitis vinifera]

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/616 (68%), Positives = 517/616 (83%), Gaps = 2/616 (0%)

Query: 30  NVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTP-ISETNMAAL 88
           +VI EM+  IE+V     +RRTQ+KE   LVRR+KLL+PL++E+REL T  +S   +  L
Sbjct: 18  DVIGEMMEVIENVGSYVGFRRTQRKESLNLVRRLKLLVPLLEELRELGTAAVSGEALGCL 77

Query: 89  CNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDE 148
             LKKALV AKKLLK CN GSKIYLA + E V +RFHAV +KL+ ALD L +++LG+SDE
Sbjct: 78  ARLKKALVSAKKLLKNCNYGSKIYLAHESEAVAVRFHAVYDKLNQALDDLPYNDLGISDE 137

Query: 149 VKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTE 208
           VKEQVELM +QL+RAKRRT+TQDIELAMD+MVVFSK +DRNAD AI+ERLA K+ L T  
Sbjct: 138 VKEQVELMRMQLKRAKRRTETQDIELAMDLMVVFSKTDDRNADTAILERLASKLELRTVA 197

Query: 209 DLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLS 268
           DLK ET+A+R LVKER   S+E+ QQ+++LL KFK++AGME ++VLD P++ + L K  S
Sbjct: 198 DLKVETVAVRKLVKERAGLSAEASQQIVELLGKFKKLAGMEESSVLDGPVLSRNLQKCPS 257

Query: 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328
           LVIPHEFLCPI+LEIM DPVI+A+GQT+ERES+QKW DS+H TCPKT QTL HLS+APNY
Sbjct: 258 LVIPHEFLCPISLEIMTDPVIVATGQTYERESIQKWLDSDHHTCPKTGQTLVHLSLAPNY 317

Query: 329 ALKNLILQWCEKNNFKLPKKDDSETSECTAEQ-KEEIVSLVEQLSSSKLEVQKEAVRKIR 387
           AL+NLILQWCEKN F+LP+KD    S  ++ Q K++I SLV+ LSSS+ +VQ++A+ KIR
Sbjct: 318 ALRNLILQWCEKNQFELPRKDIKAGSNGSSIQVKQKISSLVQNLSSSQPDVQRKAIMKIR 377

Query: 388 LLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAI 447
           +L+KENP+NRI IA+ G IPPLVQLL YPDSK+ EH VTA+LNLSIDE+NKRLIA++GAI
Sbjct: 378 MLAKENPDNRIRIANRGGIPPLVQLLSYPDSKLQEHTVTALLNLSIDEANKRLIAREGAI 437

Query: 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507
           PAIIEILQ+G+ EARENSAAALFSLSMLDENK+ IG  +GIPPLV+LLQNGT RGKKDA 
Sbjct: 438 PAIIEILQNGTDEARENSAAALFSLSMLDENKVMIGSLNGIPPLVNLLQNGTTRGKKDAA 497

Query: 508 TALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL 567
           TALFNLSLNQ+NK+RAI AGI+  L++LLE++NLGM+DEALSILLLL +HPEG+ +IG+L
Sbjct: 498 TALFNLSLNQSNKSRAIKAGIIPALLHLLEDKNLGMIDEALSILLLLVSHPEGQTEIGRL 557

Query: 568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQ 627
           SFI TLVE +++GTPKNKECAT+VLLELG NNSSFILAALQYGVY+HL+++   GT+RAQ
Sbjct: 558 SFIVTLVEIMKDGTPKNKECATSVLLELGLNNSSFILAALQYGVYDHLVEIMRCGTNRAQ 617

Query: 628 RKANALLQLISKSEHL 643
           RKAN LLQ + K EH+
Sbjct: 618 RKANCLLQHMCKCEHI 633

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791827|ref|XP_002863798.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297309633|gb|EFH40057.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/615 (67%), Positives = 525/615 (85%), Gaps = 5/615 (0%)

Query: 29  DNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAAL 88
           D ++ +++S IE + Q+  YR+TQ+KEC+ LVRR+K+L+P ++EIR  D+P   +    +
Sbjct: 51  DGLVSDIVSVIEFLDQINGYRKTQQKECFNLVRRLKILIPFLEEIRGFDSP---SCRHFV 107

Query: 89  CNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDE 148
             L+K ++VAKKLL+ C+ GSKIY+ALD E ++ RFH++ EKL+  L    FDEL +S++
Sbjct: 108 NRLRKVILVAKKLLETCSNGSKIYMALDSETMMTRFHSIYEKLNRVLVKTPFDELTISED 167

Query: 149 VKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTE 208
           VKE+++ +C QL++AKRRTDTQDIELA+DMMVVFSK + RNAD AI+ERLAKK+ L TTE
Sbjct: 168 VKEEIDALCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQTTE 227

Query: 209 DLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLS 268
           DLK ETIAI++L++E+G  + E+ Q +I+LLNKFK++ G+E T++L  P++ K   KS S
Sbjct: 228 DLKTETIAIKSLIQEKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAFTKSTS 287

Query: 269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328
           L++PHEFLCPITLEIM DPVIIA+GQT+E+ES+QKWFD+ H+TCPKTRQ L HLS+APNY
Sbjct: 288 LILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAPNY 347

Query: 329 ALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRL 388
           ALKNLI+QWCEKNNFK+P+K+ S  SE   EQK+E+  LVE LSSS LE Q+ +V+++RL
Sbjct: 348 ALKNLIMQWCEKNNFKIPEKEASPHSE--NEQKDEVSLLVEALSSSHLEEQRRSVKQMRL 405

Query: 389 LSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIP 448
           L++ENPENR+LIA+ GAIP LVQLL YPDS I E+AVT +LNLSIDE NK+LI+ +GAIP
Sbjct: 406 LARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGAIP 465

Query: 449 AIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT 508
            IIEILQ+G+ EARENSAAALFSLSMLDENK+TIGLS+GIPPLVDLLQ+GT+RGKKDA+T
Sbjct: 466 NIIEILQNGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDALT 525

Query: 509 ALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLS 568
           ALFNLSLN ANK RAIDAGIV PL+NLL++RNLGM+DEALSILLLLA+HPEGR  IGQLS
Sbjct: 526 ALFNLSLNSANKGRAIDAGIVQPLLNLLKDRNLGMIDEALSILLLLASHPEGRQAIGQLS 585

Query: 569 FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQR 628
           FIETLVE+IR+GTPKNKECAT+VLLELG+NNSSFILAALQ+GVYE+L+++T  GT+RAQR
Sbjct: 586 FIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRAQR 645

Query: 629 KANALLQLISKSEHL 643
           KANAL+QLISKSE +
Sbjct: 646 KANALIQLISKSEQI 660

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530052|ref|XP_003533598.1| PREDICTED: U-box domain-containing protein 15-like [Glycine max]

 Score =  843 bits (2177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/631 (67%), Positives = 520/631 (82%), Gaps = 1/631 (0%)

Query: 14  EEENENFAPSSPQEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEI 73
           EEE      SS  E +++++E+   IESV Q GDYRRTQ+KE + LVRR KL+LPL++E+
Sbjct: 5   EEERVVGNESSSDEKNDLVEEIQQVIESVVQFGDYRRTQRKESHNLVRRFKLMLPLLEEL 64

Query: 74  RELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSA 133
           R+L  P  E  +A L  LK AL++AK LLKLC++GSKI+L+L+ E V+I F  V EKLS 
Sbjct: 65  RDLPQPFPEIGVAWLTKLKDALLLAKDLLKLCSQGSKIHLSLETEAVMITFRKVYEKLSQ 124

Query: 134 ALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIA 193
           A DG+ FDELG+SDEVKEQ++LM +QLRRA+RRTDTQDIELAMDMMVVFS ++DRNAD A
Sbjct: 125 AFDGVPFDELGISDEVKEQLDLMHVQLRRARRRTDTQDIELAMDMMVVFSDDDDRNADSA 184

Query: 194 IVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNV 253
           I+ERLAKK+ LH+ EDL  ET+AIRNL  ER  Q +ES Q++IDLLNKFK++AGME T+V
Sbjct: 185 IIERLAKKLELHSVEDLNIETLAIRNLAAERKGQQTESTQKIIDLLNKFKRIAGMEETSV 244

Query: 254 LDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCP 313
           LDDP+V KML +  SLVIPHEFLCPITLEIM DPVI+ SGQT+ERES++KWF SNH TCP
Sbjct: 245 LDDPVVSKMLERCTSLVIPHEFLCPITLEIMTDPVIVTSGQTYERESIEKWFQSNHNTCP 304

Query: 314 KTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSE-CTAEQKEEIVSLVEQLS 372
           KTRQ L HLS+APN ALK+LI +WCE NNFKLPKK +S   E C  + KEEI +LVE LS
Sbjct: 305 KTRQPLEHLSLAPNCALKSLIEEWCENNNFKLPKKYNSSGKESCPIDSKEEIPALVESLS 364

Query: 373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432
           S  LE Q++AV KIR+LSKENPENR+L+AD G IPPLVQLL YPDSKI EHAVTA+LNLS
Sbjct: 365 SIHLEEQRKAVEKIRMLSKENPENRVLVADHGGIPPLVQLLSYPDSKIQEHAVTALLNLS 424

Query: 433 IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV 492
           IDE NK LI+ +GAIPAIIE+L++GS  A+ENSAAALFSLSMLDE K  +G S+G PPLV
Sbjct: 425 IDEGNKSLISTEGAIPAIIEVLENGSCVAKENSAAALFSLSMLDEIKEIVGQSNGFPPLV 484

Query: 493 DLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
           DLL+NGTIRGKKDAVTALFNL +N ANK RAI AGIV PL+ LL++ NLGM+DEALSILL
Sbjct: 485 DLLRNGTIRGKKDAVTALFNLCINHANKGRAIRAGIVTPLLQLLKDTNLGMIDEALSILL 544

Query: 553 LLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVY 612
           LL ++ E R +IGQLSFIETLV+++REG+PKNKECA +VLLEL ++NSSF LAALQ+GVY
Sbjct: 545 LLVSNSEARQEIGQLSFIETLVDFMREGSPKNKECAASVLLELCSSNSSFTLAALQFGVY 604

Query: 613 EHLIQLTEGGTSRAQRKANALLQLISKSEHL 643
           E+L+++ + GT+RAQRKA A+L LIS+SE +
Sbjct: 605 EYLMEIKQNGTNRAQRKAIAILDLISRSEQI 635

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492230|ref|XP_002280063.2| PREDICTED: U-box domain-containing protein 15-like [Vitis vinifera]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/612 (67%), Positives = 516/612 (84%)

Query: 32  IQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNL 91
           +QE++  I S+  +GDYRRTQKKEC  LVRR+KLLLPL++++++L   + E ++    NL
Sbjct: 37  VQELMVVIGSIVAIGDYRRTQKKECQNLVRRLKLLLPLLEDVKDLHGQVPEKSLNPFWNL 96

Query: 92  KKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKE 151
           KKAL+  KKLL  C+EGSKIYLAL+ E V+ RFH   EKLS AL+ L ++ELGVS+EVKE
Sbjct: 97  KKALLRVKKLLITCSEGSKIYLALENEAVMARFHRANEKLSQALEDLPYEELGVSEEVKE 156

Query: 152 QVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLK 211
           +++L+ + L+R+KRRTDTQDIELAMDMMVVFSK+++RNAD AI+ RLAKK+ L T EDL 
Sbjct: 157 ELDLVRMHLKRSKRRTDTQDIELAMDMMVVFSKDDERNADSAIIVRLAKKLELLTVEDLN 216

Query: 212 YETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVI 271
            ETIA+R LVKERG Q++ES Q +I+LLNKF+Q  G+E  NVLDDPIVPK L KS SL I
Sbjct: 217 AETIAVRKLVKERGGQNAESTQHVIELLNKFRQSGGLEEINVLDDPIVPKTLEKSPSLAI 276

Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
           PHEFLCPITLEIM DPV +A+GQT+ERES+QKW DSNH+TCPKT Q L H S+ PNYAL+
Sbjct: 277 PHEFLCPITLEIMTDPVFVATGQTYERESIQKWLDSNHKTCPKTMQPLVHSSLVPNYALR 336

Query: 332 NLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSK 391
           NLILQWCE NNF++PKKD S ++E ++EQKE ++S+V+ LSS++LEVQ++A +KIR+LSK
Sbjct: 337 NLILQWCENNNFQIPKKDASSSTEGSSEQKESVLSVVQNLSSNQLEVQRKAAKKIRMLSK 396

Query: 392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451
           ENP NR+LIA  G IPPLVQLL YPDSKI EH VTA+LNLSIDE+NK+LIA +GAIPAII
Sbjct: 397 ENPVNRVLIAQSGGIPPLVQLLSYPDSKIQEHTVTALLNLSIDEANKKLIAIEGAIPAII 456

Query: 452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF 511
           ++L+ GS EA+ NSAAALFSLS+ D+ K  IGLS+GIPPLVDLLQ+GTIRGK+DA TALF
Sbjct: 457 DVLRKGSVEAKGNSAAALFSLSIDDDIKAAIGLSNGIPPLVDLLQHGTIRGKRDAATALF 516

Query: 512 NLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571
           NLSLN+ANK RAI+AG++ PL+ L++  N GM+DEALSIL LLA+HP+GR +IGQLS IE
Sbjct: 517 NLSLNKANKTRAIEAGVIPPLLQLIKSPNSGMIDEALSILFLLASHPDGRQEIGQLSVIE 576

Query: 572 TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN 631
           TLVE+IR+GT KNKECAT+VLLELG++NSSFILAALQYGV EHLI++T+ G SRAQRKAN
Sbjct: 577 TLVEFIRDGTTKNKECATSVLLELGSSNSSFILAALQYGVLEHLIEITKSGNSRAQRKAN 636

Query: 632 ALLQLISKSEHL 643
           +LLQL+S+ E +
Sbjct: 637 SLLQLMSRCEQI 648

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142652|emb|CBI19855.3| unnamed protein product [Vitis vinifera]

 Score =  834 bits (2154), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/608 (67%), Positives = 514/608 (84%)

Query: 32  IQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNL 91
           +QE++  I S+  +GDYRRTQKKEC  LVRR+KLLLPL++++++L   + E ++    NL
Sbjct: 37  VQELMVVIGSIVAIGDYRRTQKKECQNLVRRLKLLLPLLEDVKDLHGQVPEKSLNPFWNL 96

Query: 92  KKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKE 151
           KKAL+  KKLL  C+EGSKIYLAL+ E V+ RFH   EKLS AL+ L ++ELGVS+EVKE
Sbjct: 97  KKALLRVKKLLITCSEGSKIYLALENEAVMARFHRANEKLSQALEDLPYEELGVSEEVKE 156

Query: 152 QVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLK 211
           +++L+ + L+R+KRRTDTQDIELAMDMMVVFSK+++RNAD AI+ RLAKK+ L T EDL 
Sbjct: 157 ELDLVRMHLKRSKRRTDTQDIELAMDMMVVFSKDDERNADSAIIVRLAKKLELLTVEDLN 216

Query: 212 YETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVI 271
            ETIA+R LVKERG Q++ES Q +I+LLNKF+Q  G+E  NVLDDPIVPK L KS SL I
Sbjct: 217 AETIAVRKLVKERGGQNAESTQHVIELLNKFRQSGGLEEINVLDDPIVPKTLEKSPSLAI 276

Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
           PHEFLCPITLEIM DPV +A+GQT+ERES+QKW DSNH+TCPKT Q L H S+ PNYAL+
Sbjct: 277 PHEFLCPITLEIMTDPVFVATGQTYERESIQKWLDSNHKTCPKTMQPLVHSSLVPNYALR 336

Query: 332 NLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSK 391
           NLILQWCE NNF++PKKD S ++E ++EQKE ++S+V+ LSS++LEVQ++A +KIR+LSK
Sbjct: 337 NLILQWCENNNFQIPKKDASSSTEGSSEQKESVLSVVQNLSSNQLEVQRKAAKKIRMLSK 396

Query: 392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451
           ENP NR+LIA  G IPPLVQLL YPDSKI EH VTA+LNLSIDE+NK+LIA +GAIPAII
Sbjct: 397 ENPVNRVLIAQSGGIPPLVQLLSYPDSKIQEHTVTALLNLSIDEANKKLIAIEGAIPAII 456

Query: 452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF 511
           ++L+ GS EA+ NSAAALFSLS+ D+ K  IGLS+GIPPLVDLLQ+GTIRGK+DA TALF
Sbjct: 457 DVLRKGSVEAKGNSAAALFSLSIDDDIKAAIGLSNGIPPLVDLLQHGTIRGKRDAATALF 516

Query: 512 NLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571
           NLSLN+ANK RAI+AG++ PL+ L++  N GM+DEALSIL LLA+HP+GR +IGQLS IE
Sbjct: 517 NLSLNKANKTRAIEAGVIPPLLQLIKSPNSGMIDEALSILFLLASHPDGRQEIGQLSVIE 576

Query: 572 TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN 631
           TLVE+IR+GT KNKECAT+VLLELG++NSSFILAALQYGV EHLI++T+ G SRAQRKAN
Sbjct: 577 TLVEFIRDGTTKNKECATSVLLELGSSNSSFILAALQYGVLEHLIEITKSGNSRAQRKAN 636

Query: 632 ALLQLISK 639
           +LLQL+S+
Sbjct: 637 SLLQLMSR 644

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147817127|emb|CAN75366.1| hypothetical protein VITISV_030646 [Vitis vinifera]

 Score =  830 bits (2143), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/611 (67%), Positives = 514/611 (84%)

Query: 32  IQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNL 91
           +QE++  I S+  +GDYRRTQKKEC  LVRR+KLLLPL++++++L   + E ++    NL
Sbjct: 37  VQELMVVIGSIVAIGDYRRTQKKECQNLVRRLKLLLPLLEDVKDLHGQVPEKSLNPFWNL 96

Query: 92  KKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKE 151
           KKAL+  KKLL  C+EGSKIYLAL+ E V+ RFH   EKLS AL+ L ++ELGVS+EVKE
Sbjct: 97  KKALLRVKKLLITCSEGSKIYLALENEAVMARFHRANEKLSQALEDLPYEELGVSEEVKE 156

Query: 152 QVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLK 211
           +++L+ + L+R+KRRTDTQDIELAMDMMVVFSK+++RNAD AI+ RLAKK+ L T EDL 
Sbjct: 157 ELDLVRMHLKRSKRRTDTQDIELAMDMMVVFSKDDERNADSAIIVRLAKKLELLTVEDLN 216

Query: 212 YETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVI 271
            ETIA+R LVKERG Q++ES Q +I+LLNKF+Q  G+E  NVLDDPIVPK L KS SL I
Sbjct: 217 AETIAVRKLVKERGGQNAESTQHVIELLNKFRQSGGLEEINVLDDPIVPKTLEKSPSLAI 276

Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
           PHEFLCPITLEIM DPV +A+GQT+ERES+QKW DSNH+TCPKT Q L H S+ PNYAL+
Sbjct: 277 PHEFLCPITLEIMTDPVFVATGQTYERESIQKWLDSNHKTCPKTMQPLVHSSLVPNYALR 336

Query: 332 NLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSK 391
           NLILQWCE NNF++PKKD S ++E ++EQKE ++S+V+ LSS++LEVQ++A +KIR+LSK
Sbjct: 337 NLILQWCENNNFQIPKKDASSSTEGSSEQKESVLSVVQNLSSNQLEVQRKAXKKIRMLSK 396

Query: 392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451
           ENP NR+LIA  G IPPLVQLL YPDSKI EH VTA+LNLSIDE+NK+LIA +GAIPAII
Sbjct: 397 ENPVNRVLIAQSGGIPPLVQLLSYPDSKIQEHTVTALLNLSIDEANKKLIAIEGAIPAII 456

Query: 452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF 511
           ++L+ GS EA+ NSAAALFSLS+ D+ K  IGLS+GIPPLVDLLQ+GTIRGK+DA TALF
Sbjct: 457 DVLRKGSVEAKGNSAAALFSLSIDDDIKAXIGLSNGIPPLVDLLQHGTIRGKRDAATALF 516

Query: 512 NLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIE 571
           NLSLN+ANK RAI+AG++ PL+ L++  N GM+DEALSIL LLA+HP+GR +IGQLS IE
Sbjct: 517 NLSLNKANKTRAIEAGVIPPLLQLIKSPNSGMIDEALSILFLLASHPDGRQEIGQLSVIE 576

Query: 572 TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN 631
           TLVE+IR+GT KNKECAT+VLLELG++NSSFILAALQYGV EHLI++T+ G SRAQRKAN
Sbjct: 577 TLVEFIRDGTTKNKECATSVLLELGSSNSSFILAALQYGVLEHLIEITKSGNSRAQRKAN 636

Query: 632 ALLQLISKSEH 642
           +LLQL+S  + 
Sbjct: 637 SLLQLMSXCDQ 647

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	643
TAIR|locus:2162276	660	PUB15 "Plant U-Box 15" [Arabid	0.951	0.927	0.640	1.5e-211
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.954	0.930	0.438	1.7e-130
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.917	0.965	0.427	1.4e-119
UNIPROTKB|Q0IMG9	694	SPL11 "E3 ubiquitin-protein li	0.961	0.890	0.407	2e-118
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.939	0.955	0.396	9.1e-116
TAIR|locus:2013990	628	AT1G71020 [Arabidopsis thalian	0.888	0.909	0.385	3.4e-93
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.891	0.936	0.383	1.3e-91
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.416	0.352	0.463	4.6e-77
TAIR|locus:2013688	729	PUB17 "plant U-box 17" [Arabid	0.828	0.731	0.355	5.3e-72
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.511	0.396	0.461	4.2e-69

TAIR|locus:2162276 PUB15 "Plant U-Box 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 2045 (724.9 bits), Expect = 1.5e-211, P = 1.5e-211
 Identities = 395/617 (64%), Positives = 511/617 (82%)

Query:    27 EIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMX 86
             + + ++ +++S +E + Q+  YRRTQ+KEC+ LVRR+K+L+P +DEIR  ++P  +  + 
Sbjct:    49 DCEGLVSDIVSIVEFLDQINGYRRTQQKECFNLVRRLKILIPFLDEIRGFESPSCKHFLN 108

Query:    87 XXXXXXXXXXXXXXXXXXXXEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVS 146
                                  GSKIY+ALD E ++ RFH++ EKL+  L    FDEL +S
Sbjct:   109 RLRKVFLAAKKLLETCS---NGSKIYMALDGETMMTRFHSIYEKLNRVLVKAPFDELMIS 165

Query:   147 DEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHT 206
              + K++++ +C QL++AKRRTDTQDIELA+DMMVVFSK + RNAD AI+ERLAKK+ L T
Sbjct:   166 GDAKDEIDSLCKQLKKAKRRTDTQDIELAVDMMVVFSKTDPRNADSAIIERLAKKLELQT 225

Query:   207 TEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKS 266
              +DLK ETIAI++L++++G  + E+ Q +I+LLNKFK++ G+E T++L  P++ K + KS
Sbjct:   226 IDDLKTETIAIQSLIQDKGGLNIETKQHIIELLNKFKKLQGLEATDILYQPVINKAITKS 285

Query:   267 LSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326
              SL++PHEFLCPITLEIM DPVIIA+GQT+E+ES+QKWFD+ H+TCPKTRQ L HLS+AP
Sbjct:   286 TSLILPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAGHKTCPKTRQELDHLSLAP 345

Query:   327 NYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKI 386
             N+ALKNLI+QWCEKNNFK+P+K+ S  S+   EQK+E+  LVE LSSS+LE Q+ +V+++
Sbjct:   346 NFALKNLIMQWCEKNNFKIPEKEVSPDSQ--NEQKDEVSLLVEALSSSQLEEQRRSVKQM 403

Query:   387 RLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGA 446
             RLL++ENPENR+LIA+ GAIP LVQLL YPDS I E+AVT +LNLSIDE NK+LI+ +GA
Sbjct:   404 RLLARENPENRVLIANAGAIPLLVQLLSYPDSGIQENAVTTLLNLSIDEVNKKLISNEGA 463

Query:   447 IPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDA 506
             IP IIEIL++G+ EARENSAAALFSLSMLDENK+TIGLS+GIPPLVDLLQ+GT+RGKKDA
Sbjct:   464 IPNIIEILENGNREARENSAAALFSLSMLDENKVTIGLSNGIPPLVDLLQHGTLRGKKDA 523

Query:   507 VTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ 566
             +TALFNLSLN ANK RAIDAGIV PL+NLL+++NLGM+DEALSILLLLA+HPEGR  IGQ
Sbjct:   524 LTALFNLSLNSANKGRAIDAGIVQPLLNLLKDKNLGMIDEALSILLLLASHPEGRQAIGQ 583

Query:   567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRA 626
             LSFIETLVE+IR+GTPKNKECAT+VLLELG+NNSSFILAALQ+GVYE+L+++T  GT+RA
Sbjct:   584 LSFIETLVEFIRQGTPKNKECATSVLLELGSNNSSFILAALQFGVYEYLVEITTSGTNRA 643

Query:   627 QRKANALLQLISKSEHL 643
             QRKANAL+QLISKSE +
Sbjct:   644 QRKANALIQLISKSEQI 660

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0048610 "cellular process involved in reproduction" evidence=RCA

GO:0048868 "pollen tube development" evidence=RCA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 1280 (455.6 bits), Expect = 1.7e-130, P = 1.7e-130
 Identities = 275/627 (43%), Positives = 389/627 (62%)

Query:    26 QEIDNVIQEMLSAIESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNM 85
             +E  +  Q ++  +  +A + DYR T KK CY L RR+KLL+P+ +EIRE + PISE  +
Sbjct:     3 EEKASAAQSLIDVVNEIAAISDYRITVKKLCYNLARRLKLLVPMFEEIRESNEPISEDTL 62

Query:    86 XXXXXXXXXXXXXXXXXXXXXEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGV 145
                                  +GSKIYL ++ E V  +   V  KL  +L  + ++EL +
Sbjct:    63 KTLMNLKEAMCSAKDYLKFCSQGSKIYLVMEREQVTSKLMEVSVKLEQSLSQIPYEELDI 122

Query:   146 SDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLH 205
             SDEV+EQVEL+  Q RRAK R D  D EL  D+  + +K+ D +A   ++ER+AKK++L 
Sbjct:   123 SDEVREQVELVLSQFRRAKGRVDVSDDELYEDLQSLCNKSSDVDAYQPVLERVAKKLHLM 182

Query:   206 TTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIV--PKML 263
                DL  E++A+  +V   G    E+I++M  +L   K     E  N  +  +    +  
Sbjct:   183 EIPDLAQESVALHEMVASSGGDVGENIEEMAMVLKMIKDFVQTEDDNGEEQKVGVNSRSN 242

Query:   264 GKSLSL------VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317
             G++ +       VIP +F CPI+LE+MRDPVI++SGQT+ER  ++KW +  H TCPKT+Q
Sbjct:   243 GQTSTAASQKIPVIPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQ 302

Query:   318 TLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDS-----ETSECTAEQKEEIVSLVEQLS 372
              L   ++ PNY L++LI QWCE N+ + PK   S      +S  +  +  +I  L+ +L+
Sbjct:   303 ALTSTTLTPNYVLRSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLA 362

Query:   373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432
                 E Q+ A  +IRLL+K N +NR+ IA+ GAIP LV LL  PDS+I EH+VTA+LNLS
Sbjct:   363 YGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLS 422

Query:   433 IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV 492
             I E+NK  I   GAIP I+++L+ GS EAREN+AA LFSLS++DENK+TIG    IPPLV
Sbjct:   423 ICENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVTIGALGAIPPLV 482

Query:   493 DLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL 552
              LL  GT RGKKDA TALFNL + Q NK +AI AG++  L  LL E   GMVDEAL+IL 
Sbjct:   483 VLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILA 542

Query:   553 LLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVY 612
             +L++HPEG+  IG    + +LVE+IR G+P+N+E A AVL+ L + +   ++ A + G+ 
Sbjct:   543 ILSSHPEGKAIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHLVEAQKLGLM 602

Query:   613 EHLIQLTEGGTSRAQRKANALLQLISK 639
               LI L   GT R +RKA  LL+ IS+
Sbjct:   603 GPLIDLAGNGTDRGKRKAAQLLERISR 629

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
 Identities = 259/606 (42%), Positives = 375/606 (61%)

Query:    40 ESVAQLGDYRRTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMXXXXXXXXXXXXXX 99
             + +A L + R   ++ C  L RR++LL PL+D +    +  S T +              
Sbjct:     7 DEIAALPEPRGPLRRPCADLSRRVRLLAPLLDHLPASSSSSSSTPLADALGAARDLLRKT 66

Query:   100 XXXXXXXEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQ 159
                    +GSKI  A+  +  +  F  V  ++  ALD L ++   +  EV+EQV L+  Q
Sbjct:    67 R------DGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQ 120

Query:   160 LRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRN 219
              +RA  RTD  D +L+MD+    + N    +D A++ R++ K+ LHT  D+K E+IA+ N
Sbjct:   121 FQRASTRTDPPDTQLSMDLAWALTDNP---SDPALLTRISHKLQLHTMADMKNESIALHN 177

Query:   220 LVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLG-KSLSLVIPHEFLCP 278
             +V     +    + QM  LL K K     E  +  +D +  +    K  S +IP EF CP
Sbjct:   178 MVISTAGEPDGCVDQMSSLLKKLKDCVVTE--DHANDALTTRSASIKHRSPIIPDEFRCP 235

Query:   279 ITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWC 338
             I+LE+M+DPVI++SGQT+ER  +QKW DS H+TCPKT+Q L+H S+ PN+ LK+LI QWC
Sbjct:   236 ISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWC 295

Query:   339 EKNNFKLPKKDDSETSECTAEQKEE----IVSLVEQLSSSKLEVQKEAVRKIRLLSKENP 394
             E N  +LPK   +   +  A+  +     +VSL+ +L S   + Q+ A  +IRLL+K N 
Sbjct:   296 EANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNV 355

Query:   395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
              NRI IA+ GAIP LV LL   D +  EHAVTA+LNLSI E+NK  I    AIP I+E+L
Sbjct:   356 NNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVL 415

Query:   455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514
             ++GS E REN+AA LFSLS++DENK+TIG +  IPPL++LL +G+ RGKKDA TA+FNL 
Sbjct:   416 KTGSMETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLC 475

Query:   515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574
             + Q NK RA+ AGIV+ LMN L +   GM+DEALS+L +LA +PEG+  I +   I  LV
Sbjct:   476 IYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLV 535

Query:   575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALL 634
             E I+ G+P+N+E A A+L  L + ++   LAA   GV + L +L+E GT RA+RKA+++L
Sbjct:   536 EVIKTGSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSIL 595

Query:   635 QLISKS 640
             +L+ ++
Sbjct:   596 ELMHQA 601

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

UNIPROTKB|Q0IMG9 SPL11 "E3 ubiquitin-protein ligase SPL11" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1166 (415.5 bits), Expect = 2.0e-118, P = 2.0e-118
 Identities = 259/635 (40%), Positives = 382/635 (60%)

Query:    21 APSSPQEIDNVIQEMLSAIESVAQ-----LGDYRRTQKKECYGLVRRMKLLLPLIDEIRE 75
             AP         ++ + +A+E+VA       G+YR   +++   L RR++LL P ++E+RE
Sbjct:    13 APPPEARAAAAVERVAAAVEAVAAGAGAGAGEYRNAYRRQLLALSRRIRLLGPFVEELRE 72

Query:    76 L--DTPISETNMXXXXXXXXXXXXXXXXXXXXXEGSKIYLALDMEIVIIRFHAVCEKLSA 133
                     E                        EGS+I L L+ + V+ +F  V  +L  
Sbjct:    73 RRRGEGEGEEEERALAPLADALEAALALLRLGREGSRISLVLERDSVMKKFQGVILQLEQ 132

Query:   134 ALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIA 193
             AL  + ++EL +SDEV+EQVEL+  QL+RAK R D  D E   D++ V+ KN D +A++A
Sbjct:   133 ALCDIPYNELDISDEVREQVELVHAQLKRAKERIDMPDDEFYNDLLSVYDKNYDPSAELA 192

Query:   194 IVERLAKKINLHTTEDLKYETIAIRNLVKERGSQS-SESIQQMIDLLNKFKQVAGMEITN 252
             I+ RL++K++L T  DL  E++A+  +V   G Q   E I++M  LL K K     +  +
Sbjct:   193 ILGRLSEKLHLMTITDLTQESLALHEMVASGGGQDPGEHIERMSMLLKKIKDFVQTQNPD 252

Query:   253 VLDDPIVPKML---GKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNH 309
              +  P+  ++L   G S  + IP EF CPI+LE+M+DPVI+++GQT+ER  ++KW  S H
Sbjct:   253 -MGPPMASRVLDSNGDSRPITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASGH 311

Query:   310 RTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKD---DSETSECTAEQKEEIVS 366
              TCP T+Q ++  ++ PNY L++LI QWCE N  + PK+    +  T  C++ ++  I +
Sbjct:   312 HTCPTTQQKMSTSALTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDA 371

Query:   367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
             L+ +L S   E Q+ A  ++RLL+K N  NRI IA+ GAIP L+ LL   D +  EHAVT
Sbjct:   372 LLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSDLRTQEHAVT 431

Query:   427 AVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
             A+LNLSI E NK  I   GA+P+I+ +L++GS EAREN+AA LFSLS++DE K+TIG   
Sbjct:   432 ALLNLSIHEDNKASIISSGAVPSIVHVLKNGSMEARENAAATLFSLSVIDEYKVTIGGMG 491

Query:   487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDE 546
              IP LV LL  G+ RGKKDA  ALFNL + Q NK RAI AG+V  +M L+      ++DE
Sbjct:   492 AIPALVVLLGEGSQRGKKDAAAALFNLCIYQGNKGRAIRAGLVPLIMGLVTNPTGALMDE 551

Query:   547 ALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL--GANNSSFIL 604
             A++IL +L++HPEG+  IG    +  LVE I  GTP+N+E A AV+L L  G ++   + 
Sbjct:   552 AMAILSILSSHPEGKAAIGAAEPVPVLVEMIGSGTPRNRENAAAVMLHLCSGEHHLVHLA 611

Query:   605 AALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639
              A + G+   L +L   GT R +RKA  LL+ +S+
Sbjct:   612 RAQECGIMVPLRELALNGTDRGKRKAVQLLERMSR 646

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0048586 "regulation of long-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1141 (406.7 bits), Expect = 9.1e-116, P = 9.1e-116
 Identities = 246/620 (39%), Positives = 385/620 (62%)

Query:    33 QEMLSA-IESVAQLGDYRRTQK--KECYG-LVRRMKLLLPLIDEIRELDTPISETNMXXX 88
             +E++S  ++SV ++  +  ++    +  G LVRR+ LL P  +E+ +++  + +  +   
Sbjct:    10 EELMSRLVDSVKEISGFSSSRGFIGKIQGDLVRRITLLSPFFEELIDVNVELKKDQITGF 69

Query:    89 XXXXXXXXXXXXXXXXXXEGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDE 148
                                GSK++   D + ++ +F  +  ++ AAL  + ++++ VS+E
Sbjct:    70 EAMRIALDSSLELFRSVNGGSKLFQLFDRDSLVEKFRDMTVEIEAALSQIPYEKIEVSEE 129

Query:   149 VKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTE 208
             V+EQV+L+  Q +RAK R +  D++L+ D+ +  ++N   + D  I++RL++++ L T +
Sbjct:   130 VREQVQLLHFQFKRAKERWEESDLQLSHDLAM--AENV-MDPDPIILKRLSQELQLTTID 186

Query:   209 DLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIV-PKMLGKSL 267
             +LK E+ AI            +  ++M  LL        ME ++   DP    +++ +  
Sbjct:   187 ELKKESHAIHEYFLSYDGDPDDCFERMSSLLKNLVDFVTMESSD--PDPSTGSRIVSRHR 244

Query:   268 SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327
             S VIP  F CPI+LE+M+DPVI+++GQT+ER S+QKW D+ H+TCPK+++TL H  + PN
Sbjct:   245 SPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 304

Query:   328 YALKNLILQWCEKNNFKLPKKDDS-ETSECTAEQKEE-----IVSLVEQLSSSKLEVQKE 381
             Y LK+LI  WCE N  +LP+   S  T++       +     ++SL+E+L++   E Q+ 
Sbjct:   305 YVLKSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRA 364

Query:   382 AVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441
             A  ++RLL+K N +NR+ IA+ GAIP LV+LL  PD +  EH+VTA+LNLSI+E NK  I
Sbjct:   365 AAGELRLLAKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEGNKGAI 424

Query:   442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR 501
                GAI  I+E+L++GS EAREN+AA LFSLS++DENK+ IG +  I  L+ LL+ GT R
Sbjct:   425 VDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIGAAGAIQALISLLEEGTRR 484

Query:   502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR 561
             GKKDA TA+FNL + Q NK+RA+  GIV PL  LL++   GMVDEAL+IL +L+T+ EG+
Sbjct:   485 GKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGMVDEALAILAILSTNQEGK 544

Query:   562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG 621
               I +   I  LVE IR G+P+N+E A A+L  L   N   +  A + G    L +LTE 
Sbjct:   545 TAIAEAESIPVLVEIIRTGSPRNRENAAAILWYLCIGNIERLNVAREVGADVALKELTEN 604

Query:   622 GTSRAQRKANALLQLISKSE 641
             GT RA+RKA +LL+LI ++E
Sbjct:   605 GTDRAKRKAASLLELIQQTE 624

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2013990 AT1G71020 [Arabidopsis thaliana (taxid:3702)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 235/610 (38%), Positives = 355/610 (58%)

Query:    53 KKECYGLVRRMKLLLPLIDEIRELDTPISETNMXXXXXXX-----XXXXXXXXXXXXXXE 107
             KK+C  L RR+ LL  LI+EIR+  +P SE++                            
Sbjct:    29 KKDCSDLARRVGLLTHLIEEIRD-SSPPSESDASSSLNSHECDWWSDLVVGLQAAKRLLS 87

Query:   108 GSKIYLALDM-----EIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRR 162
              +  + A +      + +  +F  V  KL  AL  L +D   +SDEV+EQVEL  LQLRR
Sbjct:    88 SATSFQARESSDGAAKRISFQFQCVTWKLEKALGDLTYDRYDISDEVREQVELARLQLRR 147

Query:   163 AKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAK-KINLHTTED-LKYETIAIRNL 220
             A +R  + + +      +     +D +++  ++E+L      +H+  D  K+E+      
Sbjct:   148 AMQRYGSLNSK-KFSSGLSEPMEKDASSNRKVIEKLESIPETVHSLSDEKKFES------ 200

Query:   221 VKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPIT 280
                    SS S+   +      +++    +T   DD        KS +L IP +FLCPI+
Sbjct:   201 -PPPWKSSSVSLAFFLSKDGDDERLE-KAVTENSDDS------QKSDNLTIPEDFLCPIS 252

Query:   281 LEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEK 340
             LE+M+DP I+++GQT+ER  +Q+W D  + +CPKT+Q L + ++ PNY L++LI QWC K
Sbjct:   253 LELMKDPAIVSTGQTYERSFIQRWIDCGNLSCPKTQQKLENFTLTPNYVLRSLISQWCTK 312

Query:   341 NNFKLP--------KKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE 392
             +N + P        K  D    + + +    I +LV +LSS  +E ++ AV +IR LSK 
Sbjct:   313 HNIEQPGGYMNGRTKNSDGSFRDLSGDMSA-IRALVCKLSSQSIEDRRTAVSEIRSLSKR 371

Query:   393 NPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451
             + +NRILIA+ GAIP LV+LL    D++  E+AVT +LNLSI E NK LI   GA+ +I+
Sbjct:   372 STDNRILIAEAGAIPVLVKLLTSDGDTETQENAVTCILNLSIYEHNKELIMLAGAVTSIV 431

Query:   452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF 511
              +L++GS EAREN+AA LFSLS+ DENKI IG S  I  LVDLLQ G++RGKKDA TALF
Sbjct:   432 LVLRAGSMEARENAAATLFSLSLADENKIIIGASGAIMALVDLLQYGSVRGKKDAATALF 491

Query:   512 NLSLNQANKARAIDAGIVLPLMNLLEERNLG-MVDEALSILLLLATHPEGRHKIGQLSFI 570
             NL + Q NK RA+ AGIV PL+ +L + +   M DEAL+IL +LA++   +  I + + I
Sbjct:   492 NLCIYQGNKGRAVRAGIVKPLVKMLTDSSSERMADEALTILSVLASNQVAKTAILRANAI 551

Query:   571 ETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKA 630
               L++ +++  P+N+E A A+LL L   ++  +++  + G    L++L+  GT RA+RKA
Sbjct:   552 PPLIDCLQKDQPRNRENAAAILLCLCKRDTEKLISIGRLGAVVPLMELSRDGTERAKRKA 611

Query:   631 NALLQLISKS 640
             N+LL+L+ KS
Sbjct:   612 NSLLELLRKS 621

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 229/597 (38%), Positives = 346/597 (57%)

Query:    53 KKECYGLVRRMKLLLPLIDEIRELDTPISETNMXXXXXXXXXXXXXXXXXXXXXEGSKIY 112
             KK+C  L RR+ LL  L++EIR+  TPI                            +  +
Sbjct:    29 KKDCADLTRRVCLLTHLLEEIRD-STPIDSAASSSSENDWWSDLVVGLQAAKRLLSTARF 87

Query:   113 LALDM-----EIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRT 167
              A D      + +  +F  V  KL  AL  L +D   +SDEV EQVEL   QLRRA +R 
Sbjct:    88 QARDSSDGAAKRISFQFQCVTWKLEKALSNLPYDLYDISDEVGEQVELARSQLRRAMQRY 147

Query:   168 DTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQ 227
              + +   +       S+  +R+    +++  A++  L +      ET+   +  +E   Q
Sbjct:   148 GSLN---SNKFSSALSEPMERDGFSNVIKIKAEE-KLESVS----ETL---HFGEEEEKQ 196

Query:   228 SSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLG---KSLSLVIPHEFLCPITLEIM 284
             SS  +++   +   +      + T+ LD  +V K      KS  L IP +FLCP++LE+M
Sbjct:   197 SSPPLRRSSSISLAYYLSKDAD-TDRLDK-MVNKNTDESKKSDKLTIPVDFLCPVSLELM 254

Query:   285 RDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK 344
             +DPVI+A+GQT+ER  +Q+W D  + TCPKT+Q L + ++ PNY L++LI +WC ++N +
Sbjct:   255 KDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVLRSLISRWCAEHNIE 314

Query:   345 LPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG 404
              P    +  ++ + +    I +LV++LSS   E ++ AV +IR LSK + +NRILIA+ G
Sbjct:   315 QPAGYINGRTKNSGDMSV-IRALVQRLSSRSTEDRRNAVSEIRSLSKRSTDNRILIAEAG 373

Query:   405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEAREN 464
             AIP LV LL   D    E+A+T VLNLSI E+NK LI   GA+ +I+++L++G+ EAREN
Sbjct:   374 AIPVLVNLLTSEDVATQENAITCVLNLSIYENNKELIMFAGAVTSIVQVLRAGTMEAREN 433

Query:   465 SAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI 524
             +AA LFSLS+ DENKI IG S  IP LVDLL+NGT RGKKDA TALFNL +   NK RA+
Sbjct:   434 AAATLFSLSLADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAV 493

Query:   525 DAGIVLPLMNLLEERNLG-MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPK 583
              AGIV  L+ +L +     MVDEAL+IL +LA + + +  I + + +  L+  ++    +
Sbjct:   494 RAGIVTALVKMLSDSTRHRMVDEALTILSVLANNQDAKSAIVKANTLPALIGILQTDQTR 553

Query:   584 NKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
             N+E A A+LL L   ++  ++   + G    L+ L++ GT R +RKA +LL+L+ K+
Sbjct:   554 NRENAAAILLSLCKRDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRKA 610

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 523 (189.2 bits), Expect = 4.6e-77, Sum P(2) = 4.6e-77
 Identities = 126/272 (46%), Positives = 172/272 (63%)

Query:   365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL-EH 423
             + LVE L S   +V+  A  +IR L+  + ENR+ I  CGAI PL+ LL Y + K+  EH
Sbjct:   475 IKLVEDLKSGSNKVKTAAAAEIRHLTINSIENRVHIGRCGAITPLLSLL-YSEEKLTQEH 533

Query:   424 AVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG 483
             AVTA+LNLSI E NK +I + GAI  ++ +L +G+  A+ENSAA+LFSLS+L  N+  IG
Sbjct:   534 AVTALLNLSISELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIG 593

Query:   484 LSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLG 542
              S+  I  LV+LL  GT RGKKDA +ALFNLS+   NKAR + A  V  L+ LL+  +L 
Sbjct:   594 QSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDP-DLE 652

Query:   543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSF 602
             MVD+A+++L  L+   EGR  I +   I  LVE +  G+ + KE A +VLL+L  N+  F
Sbjct:   653 MVDKAVALLANLSAVGEGRQAIVREGGIPLLVETVDLGSQRGKENAASVLLQLCLNSPKF 712

Query:   603 ILAALQYGVYEHLIQLTEGGTSRAQRKANALL 634
                 LQ G    L+ L++ GT RA+ KA  LL
Sbjct:   713 CTLVLQEGAIPPLVALSQSGTQRAKEKAQQLL 744

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2013688 PUB17 "plant U-box 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 728 (261.3 bits), Expect = 5.3e-72, P = 5.3e-72
 Identities = 202/568 (35%), Positives = 309/568 (54%)

Query:   107 EGSKIYLALDMEIVIIRFHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRR 166
             + SK++L L    +   FH + +++S  LD L  ++LG+SD+++EQ+EL+  Q R+A+  
Sbjct:   126 QSSKLWLLLQNPSISGYFHDLNQEISTLLDVLPVNDLGLSDDIREQIELLQRQSRKARLY 185

Query:   167 TDTQDIELAMDMMVVFSKNEDRNADIAIVERL--AKKINLHTTEDLKYETIAIRN-LVKE 223
              D  D  L           E+     ++  R+   +K+ +  ++  + E   +   +V  
Sbjct:   186 IDKNDESLRESFYSFLDGFENGKIPSSVDLRMFFVEKLGIRDSKSCRSEIEFLEEQIVNH 245

Query:   224 RGS-QSSESIQQMIDLLNKFKQVA-------GME--ITNVLDDP---IVPKMLGKSLSLV 270
              G  + + S+      + ++ +         GME  I N    P    V + +G +  + 
Sbjct:   246 DGDLEPTGSVINGFVAITRYCRFLLFGFEEDGMEWWIENNPKKPRKGFVAQEIGDTF-IT 304

Query:   271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
             +P +F+CPI+L++M DPVII++GQT++R S+ +W +  H TCPKT Q L    I PN AL
Sbjct:   305 VPKDFVCPISLDLMTDPVIISTGQTYDRNSIARWIEEGHCTCPKTGQMLMDSRIVPNRAL 364

Query:   331 KNLILQWCEKNNFKLPKK-DDSET--------SECTAEQKEEIVS-LVEQLSSSKLEVQK 380
             KNLI+QWC  +      +  DS          ++   E  +  VS L++ L+      Q 
Sbjct:   365 KNLIVQWCTASGISYESEFTDSPNESFASALPTKAAVEANKATVSILIKYLADGSQAAQT 424

Query:   381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL 440
              A R+IRLL+K   ENR  IA+ GAIP L +LL   ++   E++VTA+LNLSI E NK  
Sbjct:   425 VAAREIRLLAKTGKENRAYIAEAGAIPHLCRLLTSENAIAQENSVTAMLNLSIYEKNKSR 484

Query:   441 IAQQG-AIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQN 497
             I ++G  + +I+ +L SG T EA+EN+AA LFSLS + E K  I + D  +  L  LLQN
Sbjct:   485 IMEEGDCLESIVSVLVSGLTVEAQENAAATLFSLSAVHEYKKRIAIVDQCVEALALLLQN 544

Query:   498 GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH 557
             GT RGKKDAVTAL+NLS +  N +R I+ G V  L+  L  +N G+ +EA   L LL   
Sbjct:   545 GTPRGKKDAVTALYNLSTHPDNCSRMIEGGGVSSLVGAL--KNEGVAEEAAGALALLVRQ 602

Query:   558 PEGRHKIGQL-SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILA-ALQYGVYEHL 615
               G   IG+  S +  L+  +R GTP+ KE A A LLEL  +  + +    L+      L
Sbjct:   603 SLGAEAIGKEDSAVAGLMGMMRCGTPRGKENAVAALLELCRSGGAAVAEKVLRAPAIAGL 662

Query:   616 IQ-LTEGGTSRAQRKANALLQLISKSEH 642
             +Q L   GT RA+RKA +L ++  + E+
Sbjct:   663 LQTLLFTGTKRARRKAASLARVFQRREN 690

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0009626 "plant-type hypersensitive response" evidence=IGI

GO:0009814 "defense response, incompatible interaction" evidence=IMP

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IGI

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 4.2e-69, Sum P(2) = 4.2e-69
 Identities = 155/336 (46%), Positives = 215/336 (63%)

Query:   311 TCPKTRQTLAHLSIAPNYALKNLILQ-W---CEKNNFKLPKKDDSETSECTAEQKEEIVS 366
             T   TR+ L+  S  P +  +    Q W    E+   ++     +ET    +E + ++  
Sbjct:   491 TSAATRRDLSDFS--PKFMDRRTRGQFWRRPSERLGSRIVSAPSNETRRDLSEVETQVKK 548

Query:   367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
             LVE+L SS L+ Q++A  ++RLL+K N +NRI+I + GAI  LV+LL   DS   E+AVT
Sbjct:   549 LVEELKSSSLDTQRQATAELRLLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQENAVT 608

Query:   427 AVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
             A+LNLSI+++NK+ IA  GAI  +I +L++GS+EA+ENSAA LFSLS+++ENKI IG S 
Sbjct:   609 ALLNLSINDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIKIGQSG 668

Query:   487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDE 546
              I PLVDLL NGT RGKKDA TALFNLS++Q NKA  + +G V  L++L++    GMVD+
Sbjct:   669 AIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA-AGMVDK 727

Query:   547 ALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA 606
             A+++L  LAT PEGR+ IGQ   I  LVE +  G+ + KE A A LL+L  N+  F    
Sbjct:   728 AVAVLANLATIPEGRNAIGQEGGIPLLVEVVELGSARGKENAAAALLQLSTNSGRFCNMV 787

Query:   607 LQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEH 642
             LQ G    L+ L++ GT RA+ KA ALL       H
Sbjct:   788 LQEGAVPPLVALSQSGTPRAREKAQALLSYFRNQRH 823

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q681N2	PUB15_ARATH	6, ., 3, ., 2, ., -	0.6590	0.9455	0.9212	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II000086 hypothetical protein (639 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	643
smart00504	63	smart00504, Ubox, Modified RING finger domain	5e-27
pfam04564	73	pfam04564, U-box, U-box domain	4e-22
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-18
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-15
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	6e-13
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-08
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	7e-08
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	9e-08
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-07
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	2e-07
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	9e-07
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	2e-06
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	3e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	4e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	6e-06
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	3e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	5e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	6e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	0.003
pfam05804	708	pfam05804, KAP, Kinesin-associated protein (KAP)	0.004
COG5113	929	COG5113, UFD2, Ubiquitin fusion degradation protei	0.004

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  103 bits (259), Expect = 5e-27
 Identities = 36/64 (56%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNL 333
           EFLCPI+LE+M+DPVI+ SGQT+ER +++KW  S H T P T Q L H  + PN ALK+ 
Sbjct: 1   EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 334 ILQW 337
           I +W
Sbjct: 60  IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 90.0 bits (224), Expect = 4e-22
 Identities = 34/71 (47%), Positives = 46/71 (64%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
           IP EFL PITLE+M+DPVI+ SG T++R ++++   S   T P TR+ L H  + PN  L
Sbjct: 1   IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 331 KNLILQWCEKN 341
           K  I  W E+N
Sbjct: 61  KEKIDAWLEEN 71

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 79.7 bits (197), Expect = 7e-18
 Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 1/108 (0%)

Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
           LV  LSSS   VQ+EA   +  LS  N +N   + + G +P LVQLL   D ++++ A+ 
Sbjct: 12  LVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALW 71

Query: 427 AVLNLSIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLS 473
           A+ NL+    + +LI  + G +P ++ +L S + + ++N+  AL +L+
Sbjct: 72  ALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 71.2 bits (175), Expect = 5e-15
 Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 2/118 (1%)

Query: 399 LIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSG 457
            +   G +P LV LL   D  +   A  A+ NLS  +  N + + + G +PA++++L+S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 458 STEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514
             E  + +  AL +L+   ++NK+ +  + G+P LV+LL +     +K+A  AL NL+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 65.4 bits (160), Expect = 6e-13
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNG 498
            + Q G +PA++ +L S     +  +A AL +LS   ++N   +  + G+P LV LL++ 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 499 TIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEERNLGMVDEALSILLLLAT 556
                K A+ AL NL+    +    + +AG V  L+NLL+  N  +   A   L  LA+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 53.9 bits (130), Expect = 7e-09
 Identities = 30/113 (26%), Positives = 51/113 (45%), Gaps = 2/113 (1%)

Query: 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGM 543
           + G+P LV LL +     +++A  AL NLS     N    ++AG +  L+ LL+  +  +
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 544 VDEALSIL-LLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595
           V  AL  L  L A   + +  + +   +  LV  +       ++ AT  L  L
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 58.6 bits (142), Expect = 1e-08
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 358 AEQKEEIVSLVEQLSSSKLEVQKE-AVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP 416
           A    E V L+  L     E Q+E AV  + +L+ E  E++  I   G IPPLVQLL   
Sbjct: 441 ALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG 500

Query: 417 DSKILEHAVTAVLNLSIDESNKRL-IAQQGAIPAIIEILQSGSTEARENSAAALFSL 472
             K  E + T + NL     + R  +   GA+PA++ +L++G  + +E +A  L  L
Sbjct: 501 SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKL 557

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 52/191 (27%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 409 LVQLLPYPDSKILEHAVT--AVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
           L+ LL     +  E+AV   A+L   +DES K  I   G IP ++++L++GS +A+E+SA
Sbjct: 451 LISLLGLSSEQQQEYAVALLAILTDEVDES-KWAITAAGGIPPLVQLLETGSQKAKEDSA 509

Query: 467 AALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID 525
             L++L    ++ +  +  +  +P L+ LL+NG  +G++ A   L    L +   A  I 
Sbjct: 510 TVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTL--TKLVRTADAATIS 567

Query: 526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPE-GRHKIGQLSFIETLVEYIREGTPKN 584
               L L +L E +    V + L  +L +A+  +  R        + TL++ +     + 
Sbjct: 568 QLTALLLGDLPESK--VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET 625

Query: 585 KECATAVLLEL 595
           +E A +VL ++
Sbjct: 626 QEKAASVLADI 636

Length = 2102

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 54.9 bits (132), Expect = 9e-08
 Identities = 47/186 (25%), Positives = 82/186 (44%), Gaps = 7/186 (3%)

Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
           EN+  + + G I  L++L P     +L   +  + NLS D   +  +   G +P ++ +L
Sbjct: 318 ENKNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLL 377

Query: 455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV-DLLQNGTIRGKKDAVTALFNL 513
              +      +   L+ LS  D+ K     +D IP L+  +L+    R   + +    NL
Sbjct: 378 --DNDNHHGIALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINL 435

Query: 514 SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETL 573
           +LN+ N A+ I  G  L   +LL ER L   D  L  ++   +  EG  +   + +I  L
Sbjct: 436 ALNKRN-AQLICEGQGL---DLLMERALKFRDPLLMKMIRNISQHEGPTQNQFIDYIGDL 491

Query: 574 VEYIRE 579
              I+ 
Sbjct: 492 ARIIKN 497

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 40/127 (31%), Positives = 70/127 (55%), Gaps = 7/127 (5%)

Query: 349 DDSETSECTAEQK--EEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCG 404
           +++E+S    EQ+   E+  L +QL S  +E Q +AV K R LLSKE +P  + +I D G
Sbjct: 56  EEAESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVI-DAG 114

Query: 405 AIPPLVQLLPYPDSKILE-HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEAR 462
            +P  V+ +      +L+  A  A+ N++   + + +++   GA+P  I++L S   + R
Sbjct: 115 VVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVR 174

Query: 463 ENSAAAL 469
           E +  AL
Sbjct: 175 EQAVWAL 181

Length = 526

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 47.4 bits (114), Expect = 2e-07
 Identities = 19/40 (47%), Positives = 28/40 (70%)

Query: 393 NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432
           +PEN+  + + GA+PPLVQLL  PD ++ E A  A+ NL+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 45.5 bits (109), Expect = 9e-07
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 393 NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS 432
           + EN+  + D G +P LV+LL   D ++++ A  A+ NLS
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 268 SLVIPHEFLCPITLEIMRD----PVIIASGQTFERESVQKWF-DSNHRTCP 313
           +      F+CPI+ E+M D    PV++  G  + R++++K   +     CP
Sbjct: 4   AHHFHSIFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 49.9 bits (119), Expect = 3e-06
 Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 6/177 (3%)

Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
           L + + S   EV  +A   I  LS    E    + D G    LV+LL +  +KI   A+ 
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALR 307

Query: 427 AVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI-TIGL 484
           +V N+ +  +   ++I   GA+ A   +L S     R+ +   + +++  +  +I  +  
Sbjct: 308 SVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVID 367

Query: 485 SDGIPPLVDLLQNGTIRGKKDAVTALFNLS---LNQANKAR-AIDAGIVLPLMNLLE 537
           ++ IPPL+ LL +   + KK+A  A+ N +   LN+ +  R  +  G + PL +LL+
Sbjct: 368 ANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD 424

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 5/146 (3%)

Query: 382  AVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI 441
            A+  +  L++ +  N++ +A+ GA+  L + L        E A + +L   I  S+  L 
Sbjct: 1168 ALGLLTQLAEGSDVNKLAMAEAGALDALTKYLSLGPQDSTEEAASELLR--ILFSSPELR 1225

Query: 442  AQQGAIPAI---IEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG 498
              + A  A+   + +L+ GS  AR ++A AL  L   +  + +      + PLV++L  G
Sbjct: 1226 RHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTG 1285

Query: 499  TIRGKKDAVTALFNLSLNQANKARAI 524
            +   +  A+ AL  LS    +KA AI
Sbjct: 1286 SESEQHAAIGALIKLSSGNPSKALAI 1311

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 7/202 (3%)

Query: 401 ADCGAIPPLVQLL--PYPDSKI-LEHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQS 456
           AD   I  L  LL    P+SK+ +   +  VL++ S+++  +   A   A+  +I++L S
Sbjct: 561 ADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSS 620

Query: 457 GSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL 515
              E +E +A+ L  + S   +   ++   + I P + LL N T      +  AL  LS 
Sbjct: 621 SKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR 680

Query: 516 --NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETL 573
              +  K        + PL+ L +  ++ + ++A+  L  L + PE   +      I  L
Sbjct: 681 SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPL 740

Query: 574 VEYIREGTPKNKECATAVLLEL 595
              +REGT + K  A   L +L
Sbjct: 741 TRVLREGTLEGKRNAARALAQL 762

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 23/70 (32%), Positives = 44/70 (62%)

Query: 446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKD 505
           A+P ++ +L+SG+  A+ N+AA L  L   ++ ++ + L   IPPL+ LL++G+   +K 
Sbjct: 59  AMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDLRVKVLLGGCIPPLLSLLKSGSAEAQKA 118

Query: 506 AVTALFNLSL 515
           A  A++ +S 
Sbjct: 119 AAEAIYAVSS 128

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 48.2 bits (115), Expect = 1e-05
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 409 LVQLLPYPDSKILEHAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAA 467
           LV L+    + + E  + A+ +L   +      +  +  +  +I +L   S + +E + A
Sbjct: 409 LVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVA 468

Query: 468 ALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-- 524
            L  L+  +DE+K  I  + GIPPLV LL+ G+ + K+D+ T L+NL    +   RA   
Sbjct: 469 LLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLC-CHSEDIRACVE 527

Query: 525 DAGIVLPLMNLL 536
            AG V  L+ LL
Sbjct: 528 SAGAVPALLWLL 539

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.4 bits (113), Expect = 3e-05
 Identities = 76/284 (26%), Positives = 111/284 (39%), Gaps = 68/284 (23%)

Query: 364 IVSLVEQLSSSKLEVQ-KEAV-RKIRLLSKENPENRILIADCG-AIPPLVQLLP--YPDS 418
           +   +EQL +     Q KE    ++  L+K   E R  I     A+P LV LL      +
Sbjct: 15  VAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGA 74

Query: 419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS---ML 475
           K+   AV  VL    D   K L+   G IP ++ +L+SGS EA++ +A A++++S   + 
Sbjct: 75  KVNAAAVLGVLCKEEDLRVKVLLG--GCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLS 132

Query: 476 DENKITIGLSDGI-PPLVDLLQNGTIRGKKDAVT------ALFNL--------------- 513
           D     I  ++G+ P L D LQ G    K+D V       AL NL               
Sbjct: 133 DHVGSKIFSTEGVVPSLWDQLQPG---NKQDKVVEGLLTGALRNLCGSTDGFWSATLEAG 189

Query: 514 -------------SLNQANKA---------------RAIDAGIVLPLMNLLEERNLGMVD 545
                        S  QAN A               + +DAG V  L+ LL + N   V 
Sbjct: 190 GVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVR 249

Query: 546 E--ALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKEC 587
              A ++  L +   E +  I     I  L   I      +KE 
Sbjct: 250 AEAAGALEALSSQSKEAKQAIADAGGIPAL---INATVAPSKEF 290

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.2 bits (102), Expect = 5e-04
 Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 8/160 (5%)

Query: 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL---IAQQGAIPAIIEILQSGSTEA 461
           A+  L+QLL     +  E A + + +  I  S + L   +A    I   I++L + +   
Sbjct: 610 ALRTLIQLLSSSKEETQEKAASVLAD--IFSSRQDLCESLATDEIINPCIKLLTNNTEAV 667

Query: 462 RENSAAALFSL--SMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519
              SA AL +L  S+ +  K++    D I PL+ L ++ +I   + AV AL NL  +   
Sbjct: 668 ATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEV 727

Query: 520 KARAIDAGIVLPLMNLLEERNL-GMVDEALSILLLLATHP 558
            A A+   I+LPL  +L E  L G  + A ++  LL   P
Sbjct: 728 AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFP 767

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 37.4 bits (88), Expect = 6e-04
 Identities = 13/40 (32%), Positives = 25/40 (62%)

Query: 434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
              NK+ + + GA+P ++++L S   E +E +A AL +L+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 476 DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514
            ENK  +  +  +PPLV LL +     +++A  AL NL+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.5 bits (83), Expect = 0.003
 Identities = 17/39 (43%), Positives = 24/39 (61%)

Query: 476 DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS 514
           DENK  +  + G+P LV+LL++      K+A  AL NLS
Sbjct: 2   DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 277 CPITLEIMRDPVI-IASGQTFERESVQKWFDSNHRT-CP 313
           CP+TL+   +PV        FE++++      N    CP
Sbjct: 14  CPLTLQPFEEPVTSKKCNHVFEKDAILSMLRRNKTVKCP 52

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

>gnl|CDD|147776 pfam05804, KAP, Kinesin-associated protein (KAP)

 Score = 40.2 bits (94), Expect = 0.004
 Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 3/181 (1%)

Query: 419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN 478
           ++L  A   +LNL+ D   +  + ++  +  +++ L   ++E      + L  LS+ DEN
Sbjct: 260 QLLRVAFYLLLNLAEDIKVELKMRRKNIVALLVKALDRDNSELLILVVSFLKKLSIFDEN 319

Query: 479 KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE 538
           K  +  +  I  L+ L            +  LFNLS +   + + ++ G++  L++LL+ 
Sbjct: 320 KNEMEENGIIEKLLKLFPCQHEDLLNITLRLLFNLSFDTGLRPKMVNGGLLPKLVSLLDN 379

Query: 539 RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECA-TAVLLELGA 597
            N   +  AL +L  L+   + +        I  L++ + EGT +  +    A+ + L  
Sbjct: 380 DNHHGI--ALCVLYHLSCDDKAKSMFAYTDCIPMLMKMVLEGTGERVDLELIALCINLAL 437

Query: 598 N 598
           N
Sbjct: 438 N 438

This family consists of several eukaryotic kinesin-associated (KAP) proteins. Kinesins are intracellular multimeric transport motor proteins that move cellular cargo on microtubule tracks. It has been shown that the sea urchin KRP85/95 holoenzyme associates with a KAP115 non-motor protein, forming a heterotrimeric complex in vitro, called the Kinesin-II. Length = 708

>gnl|CDD|227444 COG5113, UFD2, Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 16/120 (13%)

Query: 228 SSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDP 287
           S   I+++   +N+ ++V  +E     D   VP             EFL P+   IM+DP
Sbjct: 820 SESQIEELRSFINRLEKVRVIEAVEEEDMGDVPD------------EFLDPLMFTIMKDP 867

Query: 288 VII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW--CEKNNFK 344
           V +  S  T +R S  K    +  T P  R  L    + PN  L+  I ++  C+     
Sbjct: 868 VKLPTSRITIDR-STIKAHLLSDGTDPFNRMPLTLDDVTPNAELREKINRFYKCKGQKHG 926

Length = 929

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	643
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.88
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.79
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.79
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.61
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.6
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.59
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.58
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.58
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.56
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.53
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.42
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.41
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.26
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.23
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.19
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.18
PRK09687	280	putative lyase; Provisional	99.15
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.13
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.13
PRK09687	280	putative lyase; Provisional	99.1
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.1
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.09
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.07
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.03
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.02
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.0
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.91
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	98.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.88
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.84
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.82
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.82
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.79
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.73
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.73
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.68
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.62
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.59
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.59
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.58
PHA02929	238	N1R/p28-like protein; Provisional	98.56
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.54
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.52
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.51
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.48
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.46
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.44
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.43
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.43
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.41
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.39
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.38
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.38
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.35
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.35
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.34
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.32
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.26
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.26
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.23
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.21
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.21
PTZ00429	746	beta-adaptin; Provisional	98.19
PHA02926	242	zinc finger-like protein; Provisional	98.14
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.11
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.1
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.08
PF05536	543	Neurochondrin: Neurochondrin	98.07
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.07
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.05
PF05536	543	Neurochondrin: Neurochondrin	98.03
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.02
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.01
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.01
PTZ00429	746	beta-adaptin; Provisional	98.01
PF14634	44	zf-RING_5: zinc-RING finger domain	97.99
TIGR02270	410	conserved hypothetical protein. Members are found	97.96
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.96
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	97.94
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.87
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.84
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	97.83
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.78
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.77
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	97.77
KOG2660	331	consensus Locus-specific chromosome binding protei	97.68
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.68
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.66
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.65
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.6
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.55
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.54
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.54
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.53
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.52
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.48
TIGR02270	410	conserved hypothetical protein. Members are found	97.47
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.44
KOG0289	506	consensus mRNA splicing factor [General function p	97.44
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.43
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.42
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.4
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.39
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.34
COG5369	743	Uncharacterized conserved protein [Function unknow	97.31
COG5152	259	Uncharacterized conserved protein, contains RING a	97.3
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.3
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.3
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.29
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.28
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.28
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.26
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.26
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.23
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.2
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.16
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.07
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.05
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.05
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.05
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.02
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.0
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.0
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.95
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.93
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.89
PF05659	147	RPW8: Arabidopsis broad-spectrum mildew resistance	96.84
KOG3036	293	consensus Protein involved in cell differentiation	96.83
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.81
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.74
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.69
COG5369	743	Uncharacterized conserved protein [Function unknow	96.65
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.64
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	96.63
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.6
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.6
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	96.59
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.52
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.4
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.36
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.28
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.26
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.23
PF04641	260	Rtf2: Rtf2 RING-finger	96.08
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.04
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	96.04
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.02
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.01
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.95
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.93
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.92
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	95.88
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.82
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.78
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	95.77
KOG3036	293	consensus Protein involved in cell differentiation	95.76
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.75
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.69
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	95.64
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.64
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.62
KOG3039	303	consensus Uncharacterized conserved protein [Funct	95.6
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.58
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.57
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.52
KOG4367	699	consensus Predicted Zn-finger protein [Function un	95.47
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.43
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.32
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.04
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.92
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.9
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.88
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.68
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	94.64
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	94.63
KOG1824	1233	consensus TATA-binding protein-interacting protein	94.57
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	94.53
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.42
PF05004	309	IFRD: Interferon-related developmental regulator (	94.33
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	94.27
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.18
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	94.17
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.16
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	94.06
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	93.92
KOG0567	289	consensus HEAT repeat-containing protein [General	93.87
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.83
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.74
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.72
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	93.66
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	93.56
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	93.38
PF05004	309	IFRD: Interferon-related developmental regulator (	93.32
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.31
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	93.22
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	93.16
KOG2979	262	consensus Protein involved in DNA repair [General	93.01
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	92.8
KOG3113	293	consensus Uncharacterized conserved protein [Funct	92.75
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	92.65
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.64
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.56
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	92.56
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	92.34
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	92.33
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.29
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	92.27
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	92.26
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	92.18
PF07814	361	WAPL: Wings apart-like protein regulation of heter	92.15
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.15
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	92.06
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.06
COG5219	1525	Uncharacterized conserved protein, contains RING Z	91.82
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	91.8
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.75
KOG1001	674	consensus Helicase-like transcription factor HLTF/	91.69
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	91.42
KOG0567	289	consensus HEAT repeat-containing protein [General	91.35
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	91.34
KOG4653	982	consensus Uncharacterized conserved protein [Funct	91.21
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	91.0
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	90.91
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	90.77
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	90.65
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	90.63
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	90.58
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	90.57
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.57
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.49
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	90.04
KOG0301	745	consensus Phospholipase A2-activating protein (con	90.0
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	89.98
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	89.94
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	89.78
PF08045	257	CDC14: Cell division control protein 14, SIN compo	89.71
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	89.7
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	89.18
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	89.18
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	89.13
COG5175	480	MOT2 Transcriptional repressor [Transcription]	88.9
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	88.7
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	88.63
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	88.58
KOG0825	1134	consensus PHD Zn-finger protein [General function	88.39
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	88.29
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	88.11
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	87.84
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	86.61
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	86.15
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	86.05
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	85.75
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	85.69
KOG1940	276	consensus Zn-finger protein [General function pred	85.34
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	84.5
KOG4653	982	consensus Uncharacterized conserved protein [Funct	84.41
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	84.37
KOG0298	1394	consensus DEAD box-containing helicase-like transc	84.36
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	84.18
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	84.05
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	83.93
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	83.84
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	83.71
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	83.39
KOG1941	518	consensus Acetylcholine receptor-associated protei	83.09
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	83.03
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	82.75
KOG2062	929	consensus 26S proteasome regulatory complex, subun	82.68
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	82.62
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	82.59
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	82.45
KOG1243	690	consensus Protein kinase [General function predict	82.39
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	82.31
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	81.49
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	81.31
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	80.66
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	80.62
PRK14707	2710	hypothetical protein; Provisional	80.56
KOG0414	1251	consensus Chromosome condensation complex Condensi	80.3
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	80.3

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=5.1e-28  Score=290.35  Aligned_cols=279  Identities=24%  Similarity=0.226  Sum_probs=254.0

Q ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch
Q 040749          361 KEEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      ...+..+++.|.++  +++.|+.|+..|+.+++.++++|..|++ .|+||.|+.+|++++..++++|+.+|.||+.++++
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~~vk~nAaaaL~nLS~~e~n   91 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVLCKEEDL   91 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHH
Confidence            57899999999976  7899999999999999999999999996 89999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---ccchhhhh-ccCChHHHHHHhccCCh---hhHHHHHHHH
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML---DENKITIG-LSDGIPPLVDLLQNGTI---RGKKDAVTAL  510 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~-~~g~i~~Lv~lL~~~~~---~~~~~A~~aL  510 (643)
                      +..|+..|+|++|+++|++++++++++|+++|++|+..   +.++..|+ ..|+||+|+.++++++.   .++..|+.+|
T Consensus        92 k~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL  171 (2102)
T PLN03200         92 RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGAL  171 (2102)
T ss_pred             HHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999976   44565655 58999999999998752   3456778999


Q ss_pred             HHhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCC-hHHHHH
Q 040749          511 FNLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGT-PKNKEC  587 (643)
Q Consensus       511 ~nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~  587 (643)
                      +||+.+++++.+ ++++|+|+.|+.+|.++++.++..|+.+|.+++.+ ++++..+++.|+|+.|+++|++++ +.+|++
T Consensus       172 ~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~  251 (2102)
T PLN03200        172 RNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGNEVSVRAE  251 (2102)
T ss_pred             HHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHccCCChHHHHH
Confidence            999999999865 68999999999999999999999999999988875 779999999999999999998754 689999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC---------HHHHHHHHHHHHHHHh
Q 040749          588 ATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT---------SRAQRKANALLQLISK  639 (643)
Q Consensus       588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~---------~~~k~~A~~lL~~L~~  639 (643)
                      |+++|.+||+++++.+..+++.|+++.|+.++.+.+         ...++.|.+.|.++++
T Consensus       252 AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        252 AAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999997544         3458999999999886

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=7.9e-27  Score=280.18  Aligned_cols=281  Identities=23%  Similarity=0.287  Sum_probs=250.5

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      +.++++.|+++|.+++.+.|..|++.|+++++.+++++..|+++|+||.|+++|++++..++++|+++|.|++.++++..
T Consensus       444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir  523 (2102)
T PLN03200        444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR  523 (2102)
T ss_pred             HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999877655


Q ss_pred             HHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-------------------------------------hh
Q 040749          440 LIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-------------------------------------IT  481 (643)
Q Consensus       440 ~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-------------------------------------~~  481 (643)
                      .++ ..|++++|+++|+++++++++.|+++|++|+...+..                                     ..
T Consensus       524 ~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~  603 (2102)
T PLN03200        524 ACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE  603 (2102)
T ss_pred             HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence            544 7899999999999999999999999999996322111                                     01


Q ss_pred             -hhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC--C
Q 040749          482 -IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT--H  557 (643)
Q Consensus       482 -i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~--~  557 (643)
                       ....|+++.|+.++++++...++.|+++|.|++.. ++++..++..|+|++|+.+|...+.+++.+|+++|.+|+.  +
T Consensus       604 g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~  683 (2102)
T PLN03200        604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIK  683 (2102)
T ss_pred             hhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCC
Confidence             11368999999999999999999999999999875 4456779999999999999999999999999999999985  4


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      .+.+..+++.|+|+.|+++|.+.+...++.|+.+|.+++... +....+.+.|+++.|++++++|++++|+.|.++|..|
T Consensus       684 ~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~-e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L  762 (2102)
T PLN03200        684 ENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP-EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQL  762 (2102)
T ss_pred             HHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc-hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            556677889999999999999999999999999999999865 4567777899999999999999999999999999998


Q ss_pred             Hhhc
Q 040749          638 SKSE  641 (643)
Q Consensus       638 ~~~~  641 (643)
                      +++.
T Consensus       763 ~~~~  766 (2102)
T PLN03200        763 LKHF  766 (2102)
T ss_pred             HhCC
Confidence            8754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=8.4e-26  Score=224.25  Aligned_cols=276  Identities=24%  Similarity=0.357  Sum_probs=258.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      .++..|+..+.++..++|+.++.+|.+|+.- .+||..|+..|++.+|.++-++.|..+|.++..+|.|+....+||..+
T Consensus       126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~L  204 (550)
T KOG4224|consen  126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVL  204 (550)
T ss_pred             cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhh
Confidence            4577788888888889999999999999955 899999999999999999888999999999999999999999999999


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccC--ChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD--GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g--~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                      +.+|++|.|+.++++++.++++++..++.+++.+..+|+.+++.+  .+|.||+++.++++++|-.|..||.||++..+-
T Consensus       205 V~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y  284 (550)
T KOG4224|consen  205 VHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY  284 (550)
T ss_pred             hccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh
Confidence            999999999999999999999999999999999999999999866  999999999999999999999999999999999


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHHhcC
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVLLELGAN  598 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~  598 (643)
                      ...++++|.+|.++++|+++.....-+.+.++.|++-++-+..-|+++|++.+|+++|+.++ .+.+-+|+.+|++|+..
T Consensus       285 q~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas  364 (550)
T KOG4224|consen  285 QREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS  364 (550)
T ss_pred             hhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence            99999999999999999988888888889999999999999999999999999999999876 55899999999999987


Q ss_pred             CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       599 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ...++..+.+.|++|.|.+++.+|.-.+|.....++..|.
T Consensus       365 se~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  365 SEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             hhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            8888899999999999999999999999988888887764

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-25  Score=223.28  Aligned_cols=278  Identities=26%  Similarity=0.329  Sum_probs=256.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      .+++..+.++-++.+.-+|+.+...|.++. +..+||..++.+|++|.||.+++++|..+|+.+.+++.|++.+..+|+.
T Consensus       166 sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~  244 (550)
T KOG4224|consen  166 SGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKI  244 (550)
T ss_pred             ccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHH
Confidence            366777888667888999999999999999 7899999999999999999999999999999999999999999999999


Q ss_pred             HHhcC--ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749          441 IAQQG--AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA  518 (643)
Q Consensus       441 i~~~g--~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  518 (643)
                      +++++  .++.|++++.++++.++-.|.-+|.+|+.+.+++..|++.|.+|.+|++|+++........+.++.|++.++-
T Consensus       245 Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl  324 (550)
T KOG4224|consen  245 LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL  324 (550)
T ss_pred             HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC
Confidence            99777  9999999999999999999999999999999999999999999999999998877777778899999999999


Q ss_pred             chHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          519 NKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       519 n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      |-..++++|.+.+|+.+|..+ +++++.+|..+|+||+. ++.++..|.+.|+|+.+.+++.++.-.+++.-.+++..|+
T Consensus       325 Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~La  404 (550)
T KOG4224|consen  325 NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLA  404 (550)
T ss_pred             cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHH
Confidence            999999999999999999874 45599999999999987 7788999999999999999999999999998888888887


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      -++ .....+.+.|+++.|+.+..+.+.+++.+|...|-+|+..
T Consensus       405 l~d-~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  405 LND-NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD  447 (550)
T ss_pred             hcc-ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence            654 4567788999999999999999999999999999999854

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=3.3e-25  Score=235.15  Aligned_cols=277  Identities=23%  Similarity=0.269  Sum_probs=250.0

Q ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HH
Q 040749          362 EEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KR  439 (643)
Q Consensus       362 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~  439 (643)
                      +.++.+|+.|. ..++..|..|+|+|.+++..+.+.-..++++|++|.|+.+|.+++..+++.|+++|+|++.+... |.
T Consensus       109 G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd  188 (514)
T KOG0166|consen  109 GVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRD  188 (514)
T ss_pred             CcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHH
Confidence            67999999998 45699999999999999999999999999999999999999999999999999999999997655 78


Q ss_pred             HHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          440 LIAQQGAIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      .+...|++++|+.++...+. ....++.|+|.||+........+.. ..++|.|..++.+.++.+..+|++||.+|+.++
T Consensus       189 ~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~  268 (514)
T KOG0166|consen  189 YVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGS  268 (514)
T ss_pred             HHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            88899999999999987764 7888999999999977654444444 688999999999999999999999999999776


Q ss_pred             cchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHH
Q 040749          518 ANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLE  594 (643)
Q Consensus       518 ~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~  594 (643)
                      ..+.. ++++|+++.|+++|...+..++..|+.++.|++. +....+.++..|+++.|..++. +.....+..|+|++.|
T Consensus       269 ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSN  348 (514)
T KOG0166|consen  269 NEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISN  348 (514)
T ss_pred             hHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHH
Confidence            66555 6789999999999999999999999999999977 5556778889999999999998 4455689999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ++.++.+..+.+++.|++|.|+.++.++.-+.|+.|++++.++.
T Consensus       349 ItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t  392 (514)
T KOG0166|consen  349 ITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT  392 (514)
T ss_pred             hhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999875

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=3.5e-23  Score=219.79  Aligned_cols=282  Identities=21%  Similarity=0.259  Sum_probs=248.8

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCCh-HHHHHHHHHHHHhcCCcchH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-KILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~-~~~~~a~~~L~nLs~~~~~k  438 (643)
                      +.+.++.++++|.|++.+++.+|+++|++++.+++..|+.+...|++++|+.++...+. ....++.|+|.||+......
T Consensus       150 ~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~  229 (514)
T KOG0166|consen  150 DAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPS  229 (514)
T ss_pred             cCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCC
Confidence            56889999999999999999999999999999999999999999999999999998776 77899999999999865322


Q ss_pred             HHH-HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          439 RLI-AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i-~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      ..+ .-..++|.|..+|.+.++++...|+|+|.+|+.....+ ..+.+.|++|.|+.+|.+.+..++..|++++.|+...
T Consensus       230 P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG  309 (514)
T KOG0166|consen  230 PPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTG  309 (514)
T ss_pred             CcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeec
Confidence            222 23568999999999999999999999999999665444 4555799999999999999999999999999999987


Q ss_pred             CcchHH-HHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749          517 QANKAR-AIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL  593 (643)
Q Consensus       517 ~~n~~~-lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  593 (643)
                      .+...+ +++.|+++.|..++.. +...++.+|++++.|++. +.+..++++++|.+|.|+.+|.++.-+.|..|+|++.
T Consensus       310 ~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIs  389 (514)
T KOG0166|consen  310 SDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAIS  389 (514)
T ss_pred             cHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHH
Confidence            777655 7789999999999984 566689999999999965 7888999999999999999999999999999999999


Q ss_pred             HHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          594 ELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       594 ~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      |++.. +++....+++.|++++|+.++.-.+.+.-..+...|.++-+..
T Consensus       390 N~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~  438 (514)
T KOG0166|consen  390 NLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVG  438 (514)
T ss_pred             hhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHH
Confidence            99865 4677788899999999999998888888888888888886653

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=2e-22  Score=198.73  Aligned_cols=279  Identities=20%  Similarity=0.218  Sum_probs=243.0

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-  437 (643)
                      +.+.++.+++++.+ ...-.|.+|+|+|.+++......-..++++|++|.++++|.+++.++++.++|+|+|++.+.+. 
T Consensus       112 daGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~  191 (526)
T COG5064         112 DAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGC  191 (526)
T ss_pred             hccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhH
Confidence            45789999999964 4444577999999999987777777788999999999999999999999999999999998766 


Q ss_pred             HHHHHhcCChHHHHHHhcCCC--HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          438 KRLIAQQGAIPAIIEILQSGS--TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~--~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      |..+...|++.+++.+|.+..  .....++.|+|.||+........-.. +.++|.|..|+.+.++++..+|++||..|+
T Consensus       192 RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYls  271 (526)
T COG5064         192 RDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLS  271 (526)
T ss_pred             HHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence            777779999999999998764  47788999999999865332221111 467999999999999999999999999999


Q ss_pred             cCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749          515 LNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL  592 (643)
Q Consensus       515 ~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  592 (643)
                      ..+..+.. +++.|..+.|+++|.+++..++.-|+..+.|+... ....+.++..|+++.+-.+|.+.....|..|+|.+
T Consensus       272 Dg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi  351 (526)
T COG5064         272 DGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI  351 (526)
T ss_pred             cCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence            87766655 67899999999999999999999999999999874 44566778899999999999888788999999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      .++..++.+..+.+++.+.+|+|+.++..-.-.+|+.|.+.+.+..
T Consensus       352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNat  397 (526)
T COG5064         352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNAT  397 (526)
T ss_pred             cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999988764

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.88  E-value=5.9e-22  Score=195.47  Aligned_cols=278  Identities=19%  Similarity=0.209  Sum_probs=245.2

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC--c
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID--E  435 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~--~  435 (643)
                      +.+++|.++++|.+.+.+++.+|+|+|.+++.+++..|+.+.+.|++.+++.+|.+.  +..+..++.|+|.||+..  +
T Consensus       155 d~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP  234 (526)
T COG5064         155 DAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNP  234 (526)
T ss_pred             eCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCC
Confidence            568899999999999999999999999999999999999999999999999988766  457889999999999973  2


Q ss_pred             -chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh-hhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749          436 -SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI-TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL  513 (643)
Q Consensus       436 -~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  513 (643)
                       .+...|  ..++|.|.+++.+-++++...|+|++.+|+..+..+. .+...|..+.||.+|.+.+..++..|++.+.|+
T Consensus       235 ~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNI  312 (526)
T COG5064         235 PPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNI  312 (526)
T ss_pred             CCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCe
Confidence             345555  4579999999999999999999999999997765444 455689999999999999999999999999999


Q ss_pred             ccCCcchH-HHHHcCChHHHHHHhccCChhhHHHHHHHHHHH-hCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749          514 SLNQANKA-RAIDAGIVLPLMNLLEERNLGMVDEALSILLLL-ATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       514 s~~~~n~~-~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~L-a~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                      ....+.+. .+++.|+++.+..+|.++...++.+|++.+.|+ +.+.+..+++++++.+|.|+.+|.......+..|+|+
T Consensus       313 VTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA  392 (526)
T COG5064         313 VTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA  392 (526)
T ss_pred             eecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            88666654 477899999999999998889999999999999 4578889999999999999999998888999999999


Q ss_pred             HHHHhcCC---HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          592 LLELGANN---SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       592 L~~L~~~~---~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +.+..+++   |.....++..|++.+|..++.-.+.++-+-|...++++-+
T Consensus       393 isNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         393 ISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            99997653   6677888899999999999998888887888887777644

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.80  E-value=3.2e-20  Score=149.63  Aligned_cols=72  Identities=53%  Similarity=0.990  Sum_probs=63.4

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN  342 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  342 (643)
                      +|++|.||||+++|.|||+++|||||||.+|++|+..++.+||.|+++++..+++||..||..|++|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            589999999999999999999999999999999999977899999999999999999999999999999875

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.79  E-value=2.1e-17  Score=185.28  Aligned_cols=255  Identities=19%  Similarity=0.243  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc
Q 040749          376 LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ  455 (643)
Q Consensus       376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~  455 (643)
                      ....+-++..|.+++ +++.+...+.+.|.|+.|+++|.+++.++...+++.|.+||...+||..|++.|+++.|++++.
T Consensus       263 eqLlrv~~~lLlNLA-ed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLA-EDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHHHHHHHHHHHh-cChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            444567788899999 7889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHH
Q 040749          456 SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNL  535 (643)
Q Consensus       456 ~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~l  535 (643)
                      +++.+++..+..+|+|||.+++.|..+++.|++|.|+.+|.+++  .+..++.+|+|||..++++..+...+++|.++++
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~  419 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM  419 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence            99999999999999999999999999999999999999998654  5567999999999999999999999999999998


Q ss_pred             hcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHH
Q 040749          536 LEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEH  614 (643)
Q Consensus       536 L~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~  614 (643)
                      +.. +++.+..++++++.||+.++.+.+.+.+.++++.|++..-....   ...+.++.|++.+++.....+  .+.+..
T Consensus       420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k~~f--~~~i~~  494 (708)
T PF05804_consen  420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLKELF--VDFIGD  494 (708)
T ss_pred             HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHHHHH--HHHHHH
Confidence            765 56667778899999999999999999998999999987754332   334578999999886544443  347888


Q ss_pred             HHHHhhcC-CHHHHHHHHHHHHHHH
Q 040749          615 LIQLTEGG-TSRAQRKANALLQLIS  638 (643)
Q Consensus       615 L~~ll~~g-~~~~k~~A~~lL~~L~  638 (643)
                      |..++.++ ++...-.+.++|.+|.
T Consensus       495 L~~~v~~~~~ee~~vE~LGiLaNL~  519 (708)
T PF05804_consen  495 LAKIVSSGDSEEFVVECLGILANLT  519 (708)
T ss_pred             HHHHhhcCCcHHHHHHHHHHHHhcc
Confidence            88888776 6677778888888774

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.79  E-value=5.4e-17  Score=181.96  Aligned_cols=279  Identities=24%  Similarity=0.316  Sum_probs=226.3

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      ..+.++.|+..|.+.+.+....++..|.+|+ -..+|+..|.+.|+||.|++++.+++.+++..++.+|.|||.+++.|.
T Consensus       288 ~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLS-i~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~  366 (708)
T PF05804_consen  288 NKGIVSLLVKCLDRENEELLILAVTFLKKLS-IFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRS  366 (708)
T ss_pred             hcCCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHH
Confidence            5678999999999999999999999999999 567899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCc
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQA  518 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~  518 (643)
                      .|+..|++|.|+.+|.+++  .+..+..+|.+||.++++|..+...+++|.++.++-+ ++.++...++.++.||+.++.
T Consensus       367 ~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r  444 (708)
T PF05804_consen  367 QMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKR  444 (708)
T ss_pred             HHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence            9999999999999998654  5677999999999999999999999999999998755 455566666677777777777


Q ss_pred             chHHHHHcCChHHHHH----------------------------------------------------------------
Q 040749          519 NKARAIDAGIVLPLMN----------------------------------------------------------------  534 (643)
Q Consensus       519 n~~~lv~~G~v~~Lv~----------------------------------------------------------------  534 (643)
                      |...+.+.|+++.|++                                                                
T Consensus       445 naqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld  524 (708)
T PF05804_consen  445 NAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLD  524 (708)
T ss_pred             HHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcC
Confidence            7666666555554443                                                                


Q ss_pred             ----------------Hhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 040749          535 ----------------LLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLE  594 (643)
Q Consensus       535 ----------------lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~  594 (643)
                                      +|..  ..+++.-+++.++..+|.+++....+.+.|.++.|+.++...  +.+..-..+.++..
T Consensus       525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~  604 (708)
T PF05804_consen  525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence                            2211  112333334444444445555666677889999999999864  46778888889999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      +..+.......+.+.+++..|+.++++.|+.+++-|..+|-.+..++
T Consensus       605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d  651 (708)
T PF05804_consen  605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYD  651 (708)
T ss_pred             HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC
Confidence            98886655444556889999999999999999999999999887765

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=4.4e-16  Score=170.73  Aligned_cols=278  Identities=22%  Similarity=0.237  Sum_probs=226.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC---cchH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID---ESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---~~~k  438 (643)
                      -.++..+.+|.+.++.+|-.|+.-|..+++.+...|..+.+.|+||.||.+|.+...++|.+|+++|.||...   ++||
T Consensus       233 ~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             cccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            4688899999999999999999999999999999999999999999999999999999999999999999873   4589


Q ss_pred             HHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-------C-------ChhhH
Q 040749          439 RLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-------G-------TIRGK  503 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-------~-------~~~~~  503 (643)
                      ..|.+.++|+.++++|+. ++.+++++...+|||||+.|..|..|.. .++..|.+.+-.       +       +..+.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccccccceee
Confidence            999999999999999986 7899999999999999999888877764 345555544321       1       24567


Q ss_pred             HHHHHHHHHhcc-CCcchHHHHH-cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCChh------h---------
Q 040749          504 KDAVTALFNLSL-NQANKARAID-AGIVLPLMNLLEE------RNLGMVDEALSILLLLATHPE------G---------  560 (643)
Q Consensus       504 ~~A~~aL~nLs~-~~~n~~~lv~-~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~~------~---------  560 (643)
                      .++..+|.|+++ ..+.+.+|.+ .|.|..|+..+..      .+...+++|+-+|.||+..-+      .         
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999997 6777888887 8999999999874      577889999999999975222      0         


Q ss_pred             ------------------HH---------------------HhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 040749          561 ------------------RH---------------------KIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       561 ------------------~~---------------------~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                                        +.                     ..+...+|..-..+|. +.++.+.|.++.+|-||+....
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                              00                     0111223333333444 4568899999999999997653


Q ss_pred             ----HHHHHH-HHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          601 ----SFILAA-LQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       601 ----~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                          ..+..+ .++.+.+.|++++.++++++.+.+..+|++|+..
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d  596 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRD  596 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccC
Confidence                233344 5788999999999999999999999999999754

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=2e-13  Score=135.48  Aligned_cols=277  Identities=18%  Similarity=0.233  Sum_probs=229.3

Q ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749          361 KEEIVSLVEQLS--SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~--s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      ..+...++..|.  +.+.+.....+..++.-+-.++.||..+++.++.|.+...|... ..++...+.+++..|..+++.
T Consensus       144 a~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDi  223 (461)
T KOG4199|consen  144 AEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDI  223 (461)
T ss_pred             cccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCce
Confidence            345666667665  45667777888888888888999999999999999999766654 445778888999998877653


Q ss_pred             ----------HHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-h---h
Q 040749          438 ----------KRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-R---G  502 (643)
Q Consensus       438 ----------k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~---~  502 (643)
                                ...|+..|++..|++.++.+ ++.....+..+|..|+..++.+..|.+.|++..|++++.+.+. .   .
T Consensus       224 RV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l  303 (461)
T KOG4199|consen  224 RVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTL  303 (461)
T ss_pred             eeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence                      34567788999999999876 5788889999999999999999999999999999999987433 2   3


Q ss_pred             HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc
Q 040749          503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE  579 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~  579 (643)
                      .+.++..|..|+.++.++..+++.|+.+.++.++..  .++.+...++.++..||- .|+....+++.|+-...++.|+.
T Consensus       304 ~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmka  383 (461)
T KOG4199|consen  304 AKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKA  383 (461)
T ss_pred             HHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHh
Confidence            467788888999999999999999999999999754  788999999999999987 68888889999999999999986


Q ss_pred             CC--hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          580 GT--PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       580 ~s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ..  ..++.+|++.+.|+..++.+++..++..| ++.|+......++.....|...||-|.
T Consensus       384 hP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~G-iE~Li~~A~~~h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  384 HPVAAQVQRNACNMIRNIVVRSAENRTILLANG-IEKLIRTAKANHETCEAAAKAALRDLG  443 (461)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhhccchHHhcc-HHHHHHHHHhcCccHHHHHHHHHHhcC
Confidence            43  56799999999999999888887777665 777777777777777777777787663

>smart00504 Ubox Modified RING finger domain

Probab=99.60  E-value=1.1e-15  Score=120.15  Aligned_cols=63  Identities=57%  Similarity=1.030  Sum_probs=60.0

Q ss_pred             ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749          274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW  337 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  337 (643)
                      +|.||||+++|.|||+++|||+||+.||.+|+.. +.+||.|+++++..+++||..+++.|++|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999987 56899999999999999999999999988

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.59  E-value=5.5e-14  Score=154.47  Aligned_cols=282  Identities=21%  Similarity=0.207  Sum_probs=216.8

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch--hHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcc
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE--NRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      .-++|+.||.+|.+.+.++|++|+.+|++|...+..  |+..|.+.++||.++++|+. .|.++++....+|+||+.+|.
T Consensus       273 qlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~  352 (717)
T KOG1048|consen  273 QLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDA  352 (717)
T ss_pred             HhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhH
Confidence            357899999999999999999999999999977665  99999999999999999996 599999999999999999987


Q ss_pred             hHHHHHhcCChHHHHHHhcCC--------------CHHHHHHHHHHHHhccc-cccchhhhhc-cCChHHHHHHhc----
Q 040749          437 NKRLIAQQGAIPAIIEILQSG--------------STEARENSAAALFSLSM-LDENKITIGL-SDGIPPLVDLLQ----  496 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~--------------~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~-~g~i~~Lv~lL~----  496 (643)
                      -|..|+.. ++..|..-+-.+              ..++-.+++.+|.|++. ..+.+..+.+ .|.|..|+..++    
T Consensus       353 lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~  431 (717)
T KOG1048|consen  353 LKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQ  431 (717)
T ss_pred             HHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            77776543 344444322100              12334455556666554 3445555554 455555554443    


Q ss_pred             --------------------------------------------------------------------------------
Q 040749          497 --------------------------------------------------------------------------------  496 (643)
Q Consensus       497 --------------------------------------------------------------------------------  496 (643)
                                                                                                      
T Consensus       432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~  511 (717)
T KOG1048|consen  432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS  511 (717)
T ss_pred             hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence                                                                                            


Q ss_pred             ------------------cCChhhHHHHHHHHHHhccCCc-----chHHH-HHcCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          497 ------------------NGTIRGKKDAVTALFNLSLNQA-----NKARA-IDAGIVLPLMNLLEERNLGMVDEALSILL  552 (643)
Q Consensus       497 ------------------~~~~~~~~~A~~aL~nLs~~~~-----n~~~l-v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~  552 (643)
                                        +.+....+.++.||.||+....     .+..+ ....+.+.|+++|...+..++..++.+|.
T Consensus       512 e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~Lr  591 (717)
T KOG1048|consen  512 EWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALR  591 (717)
T ss_pred             eeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHh
Confidence                              1123334566667777764322     12233 45778999999999999999999999999


Q ss_pred             HHhCChhhHHHhhcCCcHHHHHHHHhcCC------hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHH
Q 040749          553 LLATHPEGRHKIGQLSFIETLVEYIREGT------PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSR  625 (643)
Q Consensus       553 ~La~~~~~~~~i~~~g~i~~Lv~lL~~~s------~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~  625 (643)
                      ||+.+..++..|. .++++.|++.|..+.      ..+...++.+|.++...+..+...+.+.++++.|+-+..+. +++
T Consensus       592 Nls~d~rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k  670 (717)
T KOG1048|consen  592 NLSRDIRNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPK  670 (717)
T ss_pred             hhccCchhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHH
Confidence            9999999999888 589999999998643      45677788889999999999999999999999999999875 679


Q ss_pred             HHHHHHHHHHHHHhhccC
Q 040749          626 AQRKANALLQLISKSEHL  643 (643)
Q Consensus       626 ~k~~A~~lL~~L~~~~~~  643 (643)
                      +-+.|..+|..|..+.||
T Consensus       671 ~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  671 EFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999998877653

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.58  E-value=2.7e-14  Score=162.20  Aligned_cols=261  Identities=22%  Similarity=0.226  Sum_probs=223.0

Q ss_pred             HHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC------------ChHHHHHHHHHHHHhcCCc-chHHHHH-hcC
Q 040749          380 KEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP------------DSKILEHAVTAVLNLSIDE-SNKRLIA-QQG  445 (643)
Q Consensus       380 ~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~------------d~~~~~~a~~~L~nLs~~~-~~k~~i~-~~g  445 (643)
                      +.|+..|..+++ ++++|..+.+.|++..+-.||.-.            +..++..|..+|-||...+ .||..+- ..|
T Consensus       316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            377778888874 689999999999998888876521            2357899999999999854 5666554 689


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccc-c-cchhhhhccCChHHHHHH-hccCChhhHHHHHHHHHHhcc-CCcchH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSML-D-ENKITIGLSDGIPPLVDL-LQNGTIRGKKDAVTALFNLSL-NQANKA  521 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~-~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~-~~~n~~  521 (643)
                      ++..+|..|.+...++.+..+.+|.|||=. | ..|+.+.+.|.+..|+.. |+.......+..+.|||||+. +.+|+.
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA  474 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKA  474 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccch
Confidence            999999999999899999999999999933 3 345666678999999886 456667788899999999986 688999


Q ss_pred             HHHH-cCChHHHHHHhcc----CChhhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749          522 RAID-AGIVLPLMNLLEE----RNLGMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL  592 (643)
Q Consensus       522 ~lv~-~G~v~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  592 (643)
                      .|.. .|++..|+.+|..    ....+++.|-+||.|+++    +++.|+.+.+.+++..|+..|.+.+-.+..++++.|
T Consensus       475 ~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTL  554 (2195)
T KOG2122|consen  475 EICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTL  554 (2195)
T ss_pred             hhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhh
Confidence            9887 8999999999975    345778999999999865    778899999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      |||...+++..+++++.|+++.|..|+.+.+..+-+-++..|++|-.+.
T Consensus       555 WNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  555 WNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             hhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998888888888886543

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.58  E-value=2.3e-13  Score=136.29  Aligned_cols=193  Identities=23%  Similarity=0.314  Sum_probs=173.5

Q ss_pred             hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH
Q 040749          360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      +.+.++.|+..|. +.++.+|..|+.++.+.+ ..+.++..|.+.|+++.+..+|..+++.+++.|+.+|.|++.+.+|+
T Consensus        10 ~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~a-af~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen   10 EAQELQKLLCLLESTEDPFIQEKALIALGNSA-AFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             CHHHHHHHHHHHhcCCChHHHHHHHHHHHhhc-cChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            4577899999999 568999999999999987 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      ..|-  .+++.+++.+.+.  +.+.+..+..+|.+|+..++++..+.  +.++.++.+|.+|+...+..++++|.||+.+
T Consensus        89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            9883  3688888866554  56888999999999999888877775  4799999999999999999999999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749          517 QANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATH  557 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~  557 (643)
                      +.+...++.++++..++.++.. .+.++.-.++.++.|+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            9999999999999999999987 4678889999999999764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=8.7e-13  Score=131.07  Aligned_cols=264  Identities=18%  Similarity=0.231  Sum_probs=219.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcC-CcchHHHHHhcCChH
Q 040749          372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIP  448 (643)
Q Consensus       372 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~  448 (643)
                      .+++...-.+++..|..+....|+.+    ++.+...++.+|..  ++.++-...+..+..-+. ++.||..+++.++++
T Consensus       117 ~~~~~~~l~ksL~al~~lt~~qpdl~----da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~  192 (461)
T KOG4199|consen  117 ESPNESVLKKSLEAINSLTHKQPDLF----DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILE  192 (461)
T ss_pred             hCCchhHHHHHHHHHHHhhcCCcchh----ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHH
Confidence            35667777899999999987666544    55677788887764  466666666676766665 788999999999999


Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHhccccccchh----------hhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749          449 AIIEILQS-GSTEARENSAAALFSLSMLDENKI----------TIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       449 ~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~----------~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  516 (643)
                      .+...|.. |..++...+.+++..|..+|+.|.          .|+..|++..|++.++-+ ++.....++.+|..|+..
T Consensus       193 Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr  272 (461)
T KOG4199|consen  193 LILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR  272 (461)
T ss_pred             HHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            99988764 445677788999999988877665          345567889999999865 678889999999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhcc-CCh---hhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHH
Q 040749          517 QANKARAIDAGIVLPLMNLLEE-RNL---GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATA  590 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~-~~~---~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~  590 (643)
                      ++.+..+.+.|++..|+..+.+ ++.   .+...++..|..|+.+.+.+..|++.|+.+.++.++..  .+|.+.+.++.
T Consensus       273 ~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a  352 (461)
T KOG4199|consen  273 DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA  352 (461)
T ss_pred             HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence            9999999999999999999987 333   35678899999999999999999999999999998853  57999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC--HHHHHHHHHHHHHHHh
Q 040749          591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGT--SRAQRKANALLQLISK  639 (643)
Q Consensus       591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~--~~~k~~A~~lL~~L~~  639 (643)
                      ++..||-..|++...+++.|+-...++.++...  ..+|++|.+++|++--
T Consensus       353 ~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  353 IISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998887764  4678999999999853

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.53  E-value=5.6e-13  Score=133.53  Aligned_cols=226  Identities=18%  Similarity=0.204  Sum_probs=187.4

Q ss_pred             HhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch
Q 040749          401 ADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK  479 (643)
Q Consensus       401 ~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k  479 (643)
                      .+.+.+..|+.+|+. .|+.+++.++.++.|.+..+.++..|.+.|+++.+..+|.++++.++..|..+|.|++.+.+++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~   88 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ   88 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH
Confidence            456678899999985 5899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhccCChHHHHHHhccC--ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          480 ITIGLSDGIPPLVDLLQNG--TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       480 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      ..|-  ..++.+++...+.  +..++..++++|.||+..++.+..+.  +.++.++.+|..++..++..++.+|.||+.+
T Consensus        89 ~~Ik--~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~n  164 (254)
T PF04826_consen   89 EQIK--MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNLSEN  164 (254)
T ss_pred             HHHH--HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHhccC
Confidence            8874  3577777766554  56888999999999998877766654  4799999999999999999999999999999


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHH-------------HHHH-HHHCC-cHHHHHHHhhc
Q 040749          558 PEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSS-------------FILA-ALQYG-VYEHLIQLTEG  621 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-------------~~~~-~~~~g-~i~~L~~ll~~  621 (643)
                      +.....+..++++..++.++... +...-..++.+..++..+-..             .... +.+.+ ..+.|..+..+
T Consensus       165 p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h  244 (254)
T PF04826_consen  165 PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANH  244 (254)
T ss_pred             HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcC
Confidence            99999999999999999999875 567788899999999653211             1111 11222 45667777777


Q ss_pred             CCHHHHHHH
Q 040749          622 GTSRAQRKA  630 (643)
Q Consensus       622 g~~~~k~~A  630 (643)
                      .++++|++.
T Consensus       245 ~d~ev~~~v  253 (254)
T PF04826_consen  245 PDPEVKEQV  253 (254)
T ss_pred             CCHHHhhhc
Confidence            777777664

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.42  E-value=4.7e-11  Score=132.58  Aligned_cols=276  Identities=17%  Similarity=0.189  Sum_probs=221.7

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ....+.+...|.++++.++.-+++.|+.++.++......+.+.+.++.++.+|..+|..+...|+.+|.+++.++.+-..
T Consensus        76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~  155 (503)
T PF10508_consen   76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ  155 (503)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence            35678888999999999999999999999987777777788899999999999999999999999999999998888888


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                      +...+.+..|..++...+..+|..+..++.+++.. ++....+...|.++.++..+.+++.-++.+|+..|..|+..+.+
T Consensus       156 l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g  235 (503)
T PF10508_consen  156 LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHG  235 (503)
T ss_pred             HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhH
Confidence            88888899999999887888888899999999755 45556666789999999999998889999999999999999999


Q ss_pred             hHHHHHcCChHHHHHHhccC--Ch---hh-HHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749          520 KARAIDAGIVLPLMNLLEER--NL---GM-VDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL  592 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~--~~---~~-~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  592 (643)
                      ...+.+.|+++.|..++.+.  ++   .+ .--.+....+++.. +..... .-..++..+.+++.+.++..+..|+.+|
T Consensus       236 ~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~-~~p~~~~~l~~~~~s~d~~~~~~A~dtl  314 (503)
T PF10508_consen  236 LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLE-LYPAFLERLFSMLESQDPTIREVAFDTL  314 (503)
T ss_pred             HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHH-HHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence            99999999999999999762  22   11 22234666777763 221111 1134566777778888999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-CC----cHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          593 LELGANNSSFILAALQ-YG----VYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~-~g----~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ..+|+........... .+    ++........+++..+|.++...|..+
T Consensus       315 g~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~i  364 (503)
T PF10508_consen  315 GQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASI  364 (503)
T ss_pred             HHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            9999765433333133 33    355555666778888999998888877

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.41  E-value=2e-12  Score=147.26  Aligned_cols=226  Identities=20%  Similarity=0.204  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch-HHHHHhcCChHHHHH
Q 040749          376 LEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN-KRLIAQQGAIPAIIE  452 (643)
Q Consensus       376 ~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~-k~~i~~~g~i~~Lv~  452 (643)
                      ...++.|..+|-+|...+..|+..+.. .|++..+|..|.+...+++...+.+|.||+.. |.| |..+.+.|-+..|+.
T Consensus       365 ~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~  444 (2195)
T KOG2122|consen  365 NALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAA  444 (2195)
T ss_pred             HHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHH
Confidence            356889999999999999999988875 79999999999998889999999999999984 444 677778999999988


Q ss_pred             H-hcCCCHHHHHHHHHHHHhcccc-ccchhhhhc-cCChHHHHHHhcc----CChhhHHHHHHHHHHhcc----CCcchH
Q 040749          453 I-LQSGSTEARENSAAALFSLSML-DENKITIGL-SDGIPPLVDLLQN----GTIRGKKDAVTALFNLSL----NQANKA  521 (643)
Q Consensus       453 l-L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~-~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~----~~~n~~  521 (643)
                      + |...........+.+||||+.+ .+||..|.. .|++..||.+|.-    ....+.+.|-++|.|.+.    +.+.|.
T Consensus       445 ~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ  524 (2195)
T KOG2122|consen  445 CALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ  524 (2195)
T ss_pred             HHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH
Confidence            4 4555556777889999999955 689999998 7999999999964    356777889999999875    344566


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh-CChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA-THPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La-~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      .+.+.+++..|+++|.+.+-.++.++|++||||+ .+++.++.+++.|+|+.|-.++++.....-+-++++|.||..+.+
T Consensus       525 ILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  525 ILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             HHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence            6778999999999999999999999999999995 589999999999999999999999999999999999999987765


Q ss_pred             H
Q 040749          601 S  601 (643)
Q Consensus       601 ~  601 (643)
                      .
T Consensus       605 A  605 (2195)
T KOG2122|consen  605 A  605 (2195)
T ss_pred             h
Confidence            4

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.26  E-value=5.6e-10  Score=114.53  Aligned_cols=281  Identities=16%  Similarity=0.137  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC----C---hHHHHHHHHHHHHhcC
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP----D---SKILEHAVTAVLNLSI  433 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~----d---~~~~~~a~~~L~nLs~  433 (643)
                      .+.+..|.+..+|++.++-.+..+.|++++..|.++|..+.+.|+-..++..|+.-    +   .+....+...|.|-..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            57788888888999899999999999999999999999999999977777777642    2   2445566778888877


Q ss_pred             Cc-chHHHHHhcCChHHHHHHhcCC----------------------------------------------CHHHHHHHH
Q 040749          434 DE-SNKRLIAQQGAIPAIIEILQSG----------------------------------------------STEARENSA  466 (643)
Q Consensus       434 ~~-~~k~~i~~~g~i~~Lv~lL~~~----------------------------------------------~~e~~~~Aa  466 (643)
                      +. ..+.+.++.|+++.|...+.-+                                              .++.++-..
T Consensus       166 ~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~f  245 (604)
T KOG4500|consen  166 DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIF  245 (604)
T ss_pred             CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHH
Confidence            55 4588888999999777655211                                              112233444


Q ss_pred             HHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHH-------HHHHHHHhccCCcchHHHHHcC-ChHHHHHHhc
Q 040749          467 AALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKD-------AVTALFNLSLNQANKARAIDAG-IVLPLMNLLE  537 (643)
Q Consensus       467 ~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~-------A~~aL~nLs~~~~n~~~lv~~G-~v~~Lv~lL~  537 (643)
                      .+|...+.++..|..+++.|.+..++++++. .+..-+.+       ++....-|...++.-.++-..+ .+..++.-+.
T Consensus       246 eila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~  325 (604)
T KOG4500|consen  246 EILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFR  325 (604)
T ss_pred             HHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhc
Confidence            5566666777778888888999999999876 33222333       3333333445566666666655 7788888888


Q ss_pred             cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749          538 ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-----GTPKNKECATAVLLELGANNSSFILAALQYGVY  612 (643)
Q Consensus       538 ~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-----~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i  612 (643)
                      +.+..+...+.-+++|++++.+....+++.+.+..|+..+..     |+-+.+..++++|.++..-- .+...+...|+.
T Consensus       326 S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvt  404 (604)
T KOG4500|consen  326 SDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPV-SNKAHFAPAGVT  404 (604)
T ss_pred             CCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccC-CchhhccccchH
Confidence            889999999999999999999999999999999999998863     55677888999999998643 355677789999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhhcc
Q 040749          613 EHLIQLTEGGTSRAQRKANALLQLISKSEH  642 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~~A~~lL~~L~~~~~  642 (643)
                      +.++..++...|.++.+-...|+++++.+|
T Consensus       405 eaIL~~lk~~~ppv~fkllgTlrM~~d~qe  434 (604)
T KOG4500|consen  405 EAILLQLKLASPPVTFKLLGTLRMIRDSQE  434 (604)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence            999999999999999999999999987664

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.23  E-value=1.4e-09  Score=120.94  Aligned_cols=272  Identities=17%  Similarity=0.163  Sum_probs=213.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH-HHh
Q 040749          365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL-IAQ  443 (643)
Q Consensus       365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~-i~~  443 (643)
                      +.++..|.+.+.+.-..++..|..+.... .....  ..+..+.|...|.++++.++..++..|.+++.++..... +.+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~  117 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVD  117 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence            44778888888887778888888887432 22222  456788999999999999999999999999987766444 448


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch-HH
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK-AR  522 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~  522 (643)
                      .+.++.++..|.+++.++...|+.+|.+|+..+.....+...+.+..|..++...+..++..+..++.+++..++.. ..
T Consensus       118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~  197 (503)
T PF10508_consen  118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEA  197 (503)
T ss_pred             ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            89999999999999999999999999999988877777888888999999998878788888999999998765554 45


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--Ch-HH---HHHHHHHHHHHh
Q 040749          523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TP-KN---KECATAVLLELG  596 (643)
Q Consensus       523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~-~~---~e~A~~~L~~L~  596 (643)
                      +.+.|+++.++..|.+.|.-++..|+.+|..|+.++.|.+.+.+.|+++.|..++...  +| -.   --..+....+++
T Consensus       198 ~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la  277 (503)
T PF10508_consen  198 VVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLA  277 (503)
T ss_pred             HHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHH
Confidence            6679999999999998888889999999999999999999999999999999999753  34 11   111223344455


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ...+..+... -...+..|.+++.++++..+..|...+..+...
T Consensus       278 ~~~~~~v~~~-~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst  320 (503)
T PF10508_consen  278 RVSPQEVLEL-YPAFLERLFSMLESQDPTIREVAFDTLGQIGST  320 (503)
T ss_pred             hcChHHHHHH-HHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCC
Confidence            5443322211 134566777778888888888888888877643

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.19  E-value=5.8e-10  Score=98.86  Aligned_cols=117  Identities=21%  Similarity=0.221  Sum_probs=109.7

Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      .+++.|+++.|++++.+.+..++..++.+|.+++.. ++.+..+.+.|+++.+++++.+.++.++..|+++|.+++...+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            467899999999999998899999999999999997 8888899999999999999999999999999999999999888


Q ss_pred             HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      .....+.+.|+++.|..++.+++.++++.|.++|.+|+
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            77888889999999999999999999999999999886

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.18  E-value=3.2e-10  Score=100.56  Aligned_cols=116  Identities=27%  Similarity=0.331  Sum_probs=106.2

Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-h
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-E  559 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~  559 (643)
                      +.+.|+++.|+.+|.+++...+..++.+|.+++.. ++....+++.|+++.++++|.++++.++..|+++|.+|+.+. .
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~   82 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED   82 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH
Confidence            45689999999999999999999999999999987 677888899999999999999999999999999999999866 5


Q ss_pred             hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      .+..+.+.|+++.+++++.+.+..+++.|+++|.+||.
T Consensus        83 ~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          83 NKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            56667888999999999999999999999999999974

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.15  E-value=4.3e-09  Score=107.84  Aligned_cols=224  Identities=18%  Similarity=0.094  Sum_probs=162.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHh-CCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQL-LPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~l-L~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ..+..+..++.+.++.+|..|++.|..+..... .     ...+++.|..+ +..+++.++..|+.+|+++.......  
T Consensus        54 ~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~--  125 (280)
T PRK09687         54 DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY--  125 (280)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc--
Confidence            456667777788888888888888888763211 0     12256777766 56678888888888888875432211  


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                        ...++..+...+.+.++.+|..++.+|..+          +...+++.|+.+|.+.++.++..|+.+|.++....+  
T Consensus       126 --~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~--  191 (280)
T PRK09687        126 --SPKIVEQSQITAFDKSTNVRFAVAFALSVI----------NDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP--  191 (280)
T ss_pred             --chHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH--
Confidence              112445566677777888888888888654          334578999999988888899999999988832222  


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                            .+++.|+.+|.+.+..++..|+..|..+-.          ..+++.|++.+.+++  .+..|+.+|..+..  +
T Consensus       192 ------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~----------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~--~  251 (280)
T PRK09687        192 ------DIREAFVAMLQDKNEEIRIEAIIGLALRKD----------KRVLSVLIKELKKGT--VGDLIIEAAGELGD--K  251 (280)
T ss_pred             ------HHHHHHHHHhcCCChHHHHHHHHHHHccCC----------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC--H
Confidence                  356778888888888899888888877532          357889999988755  55667777777654  1


Q ss_pred             HHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHH
Q 040749          601 SFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQL  636 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~  636 (643)
                               -+++.|..++. +.+++++.+|.+.|..
T Consensus       252 ---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        252 ---------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             ---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence                     37899999996 7899999999988753

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=9.6e-10  Score=105.20  Aligned_cols=78  Identities=32%  Similarity=0.521  Sum_probs=73.1

Q ss_pred             CCCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          267 LSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       267 ~~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ...++|+.++|.|++++|++||++|+|-||+|.-|.++++.-+...|.|+.+|+...++||.+|+..|..|...|.|.
T Consensus       204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~w~  281 (284)
T KOG4642|consen  204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENEWA  281 (284)
T ss_pred             ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcccc
Confidence            446789999999999999999999999999999999999986668999999999999999999999999999998875

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.13  E-value=3.7e-11  Score=85.22  Aligned_cols=39  Identities=31%  Similarity=0.842  Sum_probs=31.3

Q ss_pred             cccCcccccCceecCCCCccchHHHHHHHhcCC---CCCCCc
Q 040749          277 CPITLEIMRDPVIIASGQTFERESVQKWFDSNH---RTCPKT  315 (643)
Q Consensus       277 CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~---~~cP~~  315 (643)
                      ||||+++|+|||+++|||+||+.||.+|++...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999998543   368876

>PRK09687 putative lyase; Provisional

Probab=99.10  E-value=4.6e-09  Score=107.66  Aligned_cols=226  Identities=14%  Similarity=0.031  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      .-.+..|+..|.+.+..++..|+..|..+..           ..+++.+..++.++++.++..|+++|+.|...+..   
T Consensus        22 ~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---   87 (280)
T PRK09687         22 KLNDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---   87 (280)
T ss_pred             hccHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---
Confidence            4568899999999999999999999987752           22677888899999999999999999998653322   


Q ss_pred             HHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          441 IAQQGAIPAIIEI-LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       441 i~~~g~i~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                        ...+++.|..+ ++..++.++..|+.+|.++.......    ...++..+...+.+.++.++..|+.+|.++.     
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-----  156 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIN-----  156 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccC-----
Confidence              22356777776 56778999999999999986432211    2235666777788889999999999997553     


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                           ...+++.|+.+|.++++.++..|+..|..+...        ...+++.|+.++.+.++.+|..|+..|..+..  
T Consensus       157 -----~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~--------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--  221 (280)
T PRK09687        157 -----DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYD--------NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD--  221 (280)
T ss_pred             -----CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCC--------CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC--
Confidence                 223789999999999999999999999988332        12567889999999999999999999977532  


Q ss_pred             HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      +         .+++.|+..+.+++.  +..|...|..+
T Consensus       222 ~---------~av~~Li~~L~~~~~--~~~a~~ALg~i  248 (280)
T PRK09687        222 K---------RVLSVLIKELKKGTV--GDLIIEAAGEL  248 (280)
T ss_pred             h---------hHHHHHHHHHcCCch--HHHHHHHHHhc
Confidence            2         467777777776653  34455555444

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2.3e-08  Score=104.00  Aligned_cols=279  Identities=19%  Similarity=0.249  Sum_probs=198.2

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      .+..+..||..|.-.+.+.-.-....|..|+ --.+|+..+.+.|.|+.|++++...+++.+...+..|.|+|.+..++.
T Consensus       302 rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~  380 (791)
T KOG1222|consen  302 RKNIVAMLVKALDRSNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP  380 (791)
T ss_pred             HHhHHHHHHHHHcccchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence            4577888999998888887778888888887 356899999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHH------------
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV------------  507 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~------------  507 (643)
                      .++..|.+|.++.+|.+.+  -...|..+|..+|.+++.|..+....+|+.+...+-++...-...++            
T Consensus       381 KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR  458 (791)
T KOG1222|consen  381 KMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKR  458 (791)
T ss_pred             HHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccc
Confidence            9999999999999997764  23557788888888888888877777887777665443211111111            


Q ss_pred             ---------------------------HHHHHhccCCc-----------------------------------------c
Q 040749          508 ---------------------------TALFNLSLNQA-----------------------------------------N  519 (643)
Q Consensus       508 ---------------------------~aL~nLs~~~~-----------------------------------------n  519 (643)
                                                 ..+.|++.+..                                         .
T Consensus       459 NaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dld  538 (791)
T KOG1222|consen  459 NAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLD  538 (791)
T ss_pred             cceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCC
Confidence                                       12233333222                                         2


Q ss_pred             hHHHHH-cCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHH
Q 040749          520 KARAID-AGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLE  594 (643)
Q Consensus       520 ~~~lv~-~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~  594 (643)
                      -.+++. ...||-+-..|..  ...+++-..+-.+..++........+..+|.|+.++++|+..  +.+..-.-..+...
T Consensus       539 w~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q  618 (791)
T KOG1222|consen  539 WAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQ  618 (791)
T ss_pred             HHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence            122121 3333444333332  123444555556666666777777788899999999999863  44555566666777


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      +..+.......+.+...--.|+.++.+.+..+|+-.--+|-.+..++
T Consensus       619 ~l~He~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d  665 (791)
T KOG1222|consen  619 FLKHELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHD  665 (791)
T ss_pred             HHHHHHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence            77774433344445556668999999999999887777777665543

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.09  E-value=6.6e-11  Score=110.84  Aligned_cols=60  Identities=27%  Similarity=0.591  Sum_probs=52.7

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc---------------CCCCCCCcCcccccCCCCccH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS---------------NHRTCPKTRQTLAHLSIAPNY  328 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~---------------~~~~cP~~~~~l~~~~l~pn~  328 (643)
                      .+..++|.||||++.++|||+++|||.||+.||.+|+..               +...||.|+..++...++|.+
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            356678999999999999999999999999999999852               235799999999998888875

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.07  E-value=1.6e-08  Score=105.09  Aligned_cols=240  Identities=17%  Similarity=0.172  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC
Q 040749          378 VQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG  457 (643)
Q Consensus       378 ~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~  457 (643)
                      .-+-|+..|.+++ ++...-..+...+.+..||+.|...+.+.....+..|..||+.++||..+.+.|.+..|++++...
T Consensus       279 LLrva~ylLlNlA-ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~  357 (791)
T KOG1222|consen  279 LLRVAVYLLLNLA-EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQ  357 (791)
T ss_pred             HHHHHHHHHHHHh-hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCC
Confidence            3456778888888 556666677888899999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc
Q 040749          458 STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE  537 (643)
Q Consensus       458 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~  537 (643)
                      +++.+......|+|||.+..++..++..|.+|.|+.++.+.+.  ..-|+..|+.++.++..+..+....+|+.+++.+.
T Consensus       358 h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~  435 (791)
T KOG1222|consen  358 HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVL  435 (791)
T ss_pred             CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987553  44588899999999999999999999999999887


Q ss_pred             cC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749          538 ER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHL  615 (643)
Q Consensus       538 ~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L  615 (643)
                      ++ +..+-...++.-.|||.+..+.+.+.+..++..|++.-- ..+    ..-..++.+++.+.+.....++  ..+..|
T Consensus       436 ~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D----~lLmK~vRniSqHeg~tqn~Fi--dyvgdL  509 (791)
T KOG1222|consen  436 SGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRD----LLLMKVVRNISQHEGATQNMFI--DYVGDL  509 (791)
T ss_pred             hcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccc----hHHHHHHHHhhhccchHHHHHH--HHHHHH
Confidence            64 344444444555799999989898988778888876543 333    2345677888877765444443  346677


Q ss_pred             HHHhhcCCHHH
Q 040749          616 IQLTEGGTSRA  626 (643)
Q Consensus       616 ~~ll~~g~~~~  626 (643)
                      ..++.+.+++.
T Consensus       510 a~i~~nd~~E~  520 (791)
T KOG1222|consen  510 AGIAKNDNSES  520 (791)
T ss_pred             HHHhhcCchHH
Confidence            77777665543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.03  E-value=3.7e-08  Score=105.25  Aligned_cols=274  Identities=11%  Similarity=0.072  Sum_probs=200.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      ...++..|...+.-++..|+..|..+...++.+.......-....|...|++. +...+.-++.+|.+|...++.|..+.
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            45566788888889999999999988865443221111111334566666654 46778888999999999999999999


Q ss_pred             hcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccCC--
Q 040749          443 QQGAIPAIIEILQSG--STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQ--  517 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~--  517 (643)
                      +.++++.|+.+|+..  +...+.+++-++|-||..++........+.|+.|+++++.. ...+.+-++.+|.||...+  
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            888999999999763  46889999999999999887666666689999999999864 5678889999999998743  


Q ss_pred             -----cchHHHHHcCChHHHHHHhcc--CChhhHHHHHHH-------HHHHhCChh------------------------
Q 040749          518 -----ANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSI-------LLLLATHPE------------------------  559 (643)
Q Consensus       518 -----~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~-------L~~La~~~~------------------------  559 (643)
                           .....|++.|+++.+-.+-..  .|+++.+..-.+       +..+++..+                        
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~E  342 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRE  342 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHH
Confidence                 123457777876655544433  566665443222       222332122                        


Q ss_pred             hHHHhhcC--CcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749          560 GRHKIGQL--SFIETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL  636 (643)
Q Consensus       560 ~~~~i~~~--g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  636 (643)
                      +...+-+.  ..+..|+++|. +.++.+..-|+.=+..++.+.|..+..+-+.|+=..+++++.+.++++|..|..+++.
T Consensus       343 N~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQk  422 (429)
T cd00256         343 NADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQK  422 (429)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            22233333  34688899995 3456667677777888999888777777789999999999999999999999998886


Q ss_pred             H
Q 040749          637 I  637 (643)
Q Consensus       637 L  637 (643)
                      |
T Consensus       423 l  423 (429)
T cd00256         423 L  423 (429)
T ss_pred             H
Confidence            5

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.4e-08  Score=111.96  Aligned_cols=257  Identities=17%  Similarity=0.173  Sum_probs=205.9

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHh-hccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcC-Ccc
Q 040749          361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLL-SKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSI-DES  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L-~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~-~~~  436 (643)
                      ...+..|++-|... ++..|.+|+.+|+.+ ...+++.-..+--.-++|.|+.+|+++ +.+++.+|+++|.+|+. .+.
T Consensus       166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~  245 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR  245 (1051)
T ss_pred             hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence            34788999999865 888999999999854 445555444444456899999999987 78999999999999997 677


Q ss_pred             hHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          437 NKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      ....+++.++||.++.-|. -...++.+.++.+|-.+|..  .-..|.+.|++.+.+..|.--+..+++.|+.+..|.|.
T Consensus       246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--ccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777889999999998664 45689999999999999853  34567789999999999987788899999999999986


Q ss_pred             C--CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcC----ChHHH
Q 040749          516 N--QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREG----TPKNK  585 (643)
Q Consensus       516 ~--~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~----s~~~~  585 (643)
                      .  ++.-..+++  ++|.|..+|...+...++.++-++..++.    .++--+.+...|.|..+..++.-.    +..+.
T Consensus       324 si~sd~f~~v~e--alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~  401 (1051)
T KOG0168|consen  324 SIRSDEFHFVME--ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTY  401 (1051)
T ss_pred             cCCCccchHHHH--HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccch
Confidence            3  344444444  68999999999888999999988888865    455567788899999999999743    22345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc
Q 040749          586 ECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG  621 (643)
Q Consensus       586 e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~  621 (643)
                      ...+..|..+|++++-.....+..++...|..++..
T Consensus       402 ~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  402 TGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             hHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            556667788888888888888889999999988864

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.00  E-value=3.8e-10  Score=118.58  Aligned_cols=70  Identities=14%  Similarity=0.360  Sum_probs=63.8

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE  339 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  339 (643)
                      ..+...|.||||++++.+||+++|||+||..||..|+... ..||.|+..+....+.+|..+.++|+.|..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~-~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQ-PKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCC-CCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            3577889999999999999999999999999999999864 479999999998889999999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.91  E-value=1.7e-08  Score=105.73  Aligned_cols=228  Identities=18%  Similarity=0.227  Sum_probs=165.7

Q ss_pred             cHHHHHhCC--CCChHHHHHHHHHHHHhcCCcchHH-HHHh------cCChHHHHHHhcCCCHHHHHHHHHHHHhccccc
Q 040749          406 IPPLVQLLP--YPDSKILEHAVTAVLNLSIDESNKR-LIAQ------QGAIPAIIEILQSGSTEARENSAAALFSLSMLD  476 (643)
Q Consensus       406 i~~Lv~lL~--~~d~~~~~~a~~~L~nLs~~~~~k~-~i~~------~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~  476 (643)
                      ...++.+|+  +++.++....+..+..+..+++.+. .+..      ...+.++++++.+++..+...|+.+|..|....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            445555554  3588899999999999887665543 3332      236889999999999999999999999998765


Q ss_pred             cchhhhhccCChHHHHHHhcc----CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh-----cc--CChhhHH
Q 040749          477 ENKITIGLSDGIPPLVDLLQN----GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL-----EE--RNLGMVD  545 (643)
Q Consensus       477 ~~k~~i~~~g~i~~Lv~lL~~----~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL-----~~--~~~~~~~  545 (643)
                      ..+......+.++.+++.+++    .+......|+.+|.+|...++.|..+.+.|+++.|..++     ..  ....++-
T Consensus       137 ~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y  216 (312)
T PF03224_consen  137 PKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQY  216 (312)
T ss_dssp             TT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHH
T ss_pred             CccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHH
Confidence            554444335677888888775    334566889999999999999999999999999999999     22  3456678


Q ss_pred             HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcC-
Q 040749          546 EALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGG-  622 (643)
Q Consensus       546 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g-  622 (643)
                      +++-++|.|+-+++....+...+.|+.|+++++.. ...+..-++++|.|++...+. ....++..|+++.+-.+.... 
T Consensus       217 ~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~  296 (312)
T PF03224_consen  217 QALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKW  296 (312)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--
T ss_pred             HHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCC
Confidence            89999999999999999999999999999999864 477888999999999987765 667777888888777777654 


Q ss_pred             -CHHHHHHHHHH
Q 040749          623 -TSRAQRKANAL  633 (643)
Q Consensus       623 -~~~~k~~A~~l  633 (643)
                       +++..+--..+
T Consensus       297 ~Dedl~edl~~L  308 (312)
T PF03224_consen  297 SDEDLTEDLEFL  308 (312)
T ss_dssp             SSHHHHHHHHHH
T ss_pred             CCHHHHHHHHHH
Confidence             77776554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=98.89  E-value=1.3e-07  Score=97.38  Aligned_cols=260  Identities=15%  Similarity=0.093  Sum_probs=187.9

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--------------------------------------------
Q 040749          381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--------------------------------------------  416 (643)
Q Consensus       381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--------------------------------------------  416 (643)
                      -+...|.+...++.+.|...++.|+++.|...+.-+                                            
T Consensus       155 v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~  234 (604)
T KOG4500|consen  155 VAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPS  234 (604)
T ss_pred             HHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHH
Confidence            344566666667777777777777777665544321                                            


Q ss_pred             --ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC-CC----HH---HHHHHHHHHHhccccccchhhhhcc-
Q 040749          417 --DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS-GS----TE---ARENSAAALFSLSMLDENKITIGLS-  485 (643)
Q Consensus       417 --d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-~~----~e---~~~~Aa~~L~~Ls~~~~~k~~i~~~-  485 (643)
                        ++++.+-....|...+.++.-+-.+++.|.+..++++++. .+    .+   .-..++....-|...|+.-..+... 
T Consensus       235 ~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p  314 (604)
T KOG4500|consen  235 MVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADP  314 (604)
T ss_pred             hhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCc
Confidence              2334445556666667677777778889999999998875 21    11   1122333333344445554445444 


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCChhh
Q 040749          486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATHPEG  560 (643)
Q Consensus       486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~~~  560 (643)
                      ..+..+++.+.+.+......+.-+|.|++..+.++..+++.|.+..|++.|..     ++-..+.+++.+|.||.-...+
T Consensus       315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n  394 (604)
T KOG4500|consen  315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN  394 (604)
T ss_pred             HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence            48999999999999999999999999999999999999999999999999965     4556788999999999999999


Q ss_pred             HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHH-HHHHHHHHHHHHH
Q 040749          561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSR-AQRKANALLQLIS  638 (643)
Q Consensus       561 ~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~-~k~~A~~lL~~L~  638 (643)
                      +..+..+|++..++..+...+|.+...-...|..+-..-+ -.+....+...+..|+.+.++.+-. +--...++|..|-
T Consensus       395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lI  474 (604)
T KOG4500|consen  395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLI  474 (604)
T ss_pred             hhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence            9999999999999999999999999998888887765443 2334444566788888888877543 3444444444444


Q ss_pred             hh
Q 040749          639 KS  640 (643)
Q Consensus       639 ~~  640 (643)
                      +|
T Consensus       475 kH  476 (604)
T KOG4500|consen  475 KH  476 (604)
T ss_pred             Hh
Confidence            33

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.88  E-value=4.2e-08  Score=102.77  Aligned_cols=213  Identities=21%  Similarity=0.240  Sum_probs=160.9

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc------CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC------GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~------g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      .+++.+ +.+.+.....+..+..+..+++.....+...      ....++++++.++|..++..|+..|..+......+.
T Consensus        62 ~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~  140 (312)
T PF03224_consen   62 NLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRS  140 (312)
T ss_dssp             HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--
T ss_pred             HHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccc
Confidence            444444 4678888899999999998888776666652      257788899999999999999999999987655443


Q ss_pred             HHHhcCChHHHHHHhcC----CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh-----cc--CChhhHHHHHH
Q 040749          440 LIAQQGAIPAIIEILQS----GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL-----QN--GTIRGKKDAVT  508 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL-----~~--~~~~~~~~A~~  508 (643)
                      .-...+.++.++..|.+    ++.+.+..|+.+|.+|...+.+|..+.+.++++.+++++     .+  .....++.++.
T Consensus       141 ~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll  220 (312)
T PF03224_consen  141 EKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALL  220 (312)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHH
Confidence            33235667888887765    345667899999999999999999999999999999999     22  24678899999


Q ss_pred             HHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChh--hHHHhhcCCcHHHHHHHHhc
Q 040749          509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPE--GRHKIGQLSFIETLVEYIRE  579 (643)
Q Consensus       509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~--~~~~i~~~g~i~~Lv~lL~~  579 (643)
                      +++.|+.+++....+...+.|+.|++++.. ..+.++.-++++|.||.....  ....++..|+++.+-.+...
T Consensus       221 ~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~r  294 (312)
T PF03224_consen  221 CLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSER  294 (312)
T ss_dssp             HHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS
T ss_pred             HHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcC
Confidence            999999999999999999999999999976 778999999999999998655  77777776666665555543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.84  E-value=6.7e-07  Score=106.54  Aligned_cols=120  Identities=15%  Similarity=0.060  Sum_probs=69.0

Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749          488 IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQL  567 (643)
Q Consensus       488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~  567 (643)
                      ++.|..++++.++.++..|+.+|.++...         ..+++.++..|.++++.++..|+.+|..+..          .
T Consensus       777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~----------~  837 (897)
T PRK13800        777 GDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALRASAWQVRQGAARALAGAAA----------D  837 (897)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhcCCChHHHHHHHHHHHhccc----------c
Confidence            44555555555555555555555444211         0112334555555555555555555554321          2


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749          568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL  636 (643)
Q Consensus       568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  636 (643)
                      ..++.|+.+|.+.++.+|..|+.+|..+ ..++         ...+.|...+.+.++.+|+.|...|..
T Consensus       838 ~a~~~L~~~L~D~~~~VR~~A~~aL~~~-~~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        838 VAVPALVEALTDPHLDVRKAAVLALTRW-PGDP---------AARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             chHHHHHHHhcCCCHHHHHHHHHHHhcc-CCCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            3457777777777777777777777665 1122         246677777788888888888877753

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=1.5e-09  Score=103.39  Aligned_cols=58  Identities=26%  Similarity=0.617  Sum_probs=51.9

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCcCcccccCCCCccHH
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLAHLSIAPNYA  329 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~l~pn~~  329 (643)
                      -..|.|-||++.-+|||++.|||-||+.||.+|++.  +...||+|+..++.+.++|-|.
T Consensus        45 ~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   45 GGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            356999999999999999999999999999999993  4456899999999999999764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.82  E-value=2.4e-09  Score=75.06  Aligned_cols=38  Identities=37%  Similarity=0.934  Sum_probs=33.1

Q ss_pred             cccCcccccCc-eecCCCCccchHHHHHHHhcCCCCCCCc
Q 040749          277 CPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKT  315 (643)
Q Consensus       277 CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~~~~~~cP~~  315 (643)
                      ||||.+.+.+| ++++|||+||+.||++|++. +..||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 5789986

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.79  E-value=5.7e-07  Score=107.17  Aligned_cols=230  Identities=17%  Similarity=0.114  Sum_probs=144.9

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      +...++.|++.|.+.++.+|+.|+..|..+..           .++++.|+..|+.+++.++..|+.+|..+....    
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~----  683 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVL----  683 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc----
Confidence            34567889999999999999999999887652           336788889998889999998888887763211    


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-----------cc--hh----hhhccCChHHHHHHhccCChhh
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-----------EN--KI----TIGLSDGIPPLVDLLQNGTIRG  502 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-----------~~--k~----~i~~~g~i~~Lv~lL~~~~~~~  502 (643)
                           ...+.+...|.+.++.+|..|+.+|..+...+           +.  +.    .++..+..+.|..++.+.++.+
T Consensus       684 -----~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~V  758 (897)
T PRK13800        684 -----PPAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREV  758 (897)
T ss_pred             -----CchHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHH
Confidence                 11234455555555566665555555442100           00  00    0000112233444455555555


Q ss_pred             HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCCh
Q 040749          503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTP  582 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~  582 (643)
                      +..++.+|..+...        +...++.|..++.++++.++..|+..|..+...+         ..+..+...|.+.++
T Consensus       759 R~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~  821 (897)
T PRK13800        759 RIAVAKGLATLGAG--------GAPAGDAVRALTGDPDPLVRAAALAALAELGCPP---------DDVAAATAALRASAW  821 (897)
T ss_pred             HHHHHHHHHHhccc--------cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCCh
Confidence            55555555544321        1123566777777777777777777776653321         223456677777777


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          583 KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       583 ~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      .+|..|+.+|..+..           ...++.|..++.+.+..+|..|...|..+
T Consensus       822 ~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~  865 (897)
T PRK13800        822 QVRQGAARALAGAAA-----------DVAVPALVEALTDPHLDVRKAAVLALTRW  865 (897)
T ss_pred             HHHHHHHHHHHhccc-----------cchHHHHHHHhcCCCHHHHHHHHHHHhcc
Confidence            777777777766532           23579999999999999999999999775

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.73  E-value=3.8e-09  Score=104.67  Aligned_cols=67  Identities=19%  Similarity=0.378  Sum_probs=60.5

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW  337 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  337 (643)
                      .+.+-++|-||.++|+-|+++|||||||.-||..++.. ++.||.|..+.+...+..|..+..+|+.+
T Consensus        19 ~lD~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~   85 (442)
T KOG0287|consen   19 TLDDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSL   85 (442)
T ss_pred             hhHHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHH
Confidence            35567899999999999999999999999999999985 56899999999999999999988888765

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=4.2e-06  Score=92.29  Aligned_cols=272  Identities=20%  Similarity=0.245  Sum_probs=205.3

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~  436 (643)
                      ..++|+.|+..+.+ .-.+.|+.|+..|..+++   ..|..++ +.|+++|+..|..+  |+++...++.+++++..+++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence            45789999998875 457889999999999984   4555555 45789999999876  89999999999999987553


Q ss_pred             ------h-H------HH----HH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc--cchhhhhc-cCChHHHHHHh
Q 040749          437 ------N-K------RL----IA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLD--ENKITIGL-SDGIPPLVDLL  495 (643)
Q Consensus       437 ------~-k------~~----i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~-~g~i~~Lv~lL  495 (643)
                            + +      .+    ++ ..+.|..++..+...+-.+|..+...|.+|-...  +.+..+.. +-+|..|+.+|
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                  1 2      12    22 5788999999999989999999999999986543  45555554 88999999999


Q ss_pred             ccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccC---C-hhhHHHHHHHHHHHhC-ChhhHHHhhcCCc
Q 040749          496 QNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEER---N-LGMVDEALSILLLLAT-HPEGRHKIGQLSF  569 (643)
Q Consensus       496 ~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~---~-~~~~~~Al~~L~~La~-~~~~~~~i~~~g~  569 (643)
                      .+....++-.|+..|..|+....+..++|. .+++..|..++...   + .-+++.|+.+|.||-. +..++..+.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            998888999999999999998888888887 89999999999761   2 3568999999999987 5677888888899


Q ss_pred             HHHHHHHHhc---CCh--------H--HHHHHHHHHHHHhcC-C-H---HHH-HHHHHCCcHHHHHHHhhcC--CHHHHH
Q 040749          570 IETLVEYIRE---GTP--------K--NKECATAVLLELGAN-N-S---SFI-LAALQYGVYEHLIQLTEGG--TSRAQR  628 (643)
Q Consensus       570 i~~Lv~lL~~---~s~--------~--~~e~A~~~L~~L~~~-~-~---~~~-~~~~~~g~i~~L~~ll~~g--~~~~k~  628 (643)
                      |+.|.++|..   ++.        +  .-..|+.++..+..- + +   ..+ ..+...+++..|+.++.+.  ...++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988863   221        1  123456666666532 1 1   122 3455788999999888765  334444


Q ss_pred             HHHHHHH
Q 040749          629 KANALLQ  635 (643)
Q Consensus       629 ~A~~lL~  635 (643)
                      .+.-.+.
T Consensus       336 esiitvA  342 (970)
T KOG0946|consen  336 ESIITVA  342 (970)
T ss_pred             HHHHHHH
Confidence            4433333

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.68  E-value=1e-08  Score=72.65  Aligned_cols=36  Identities=31%  Similarity=0.746  Sum_probs=23.3

Q ss_pred             cccCcccccC----ceecCCCCccchHHHHHHHhcC---CCCCC
Q 040749          277 CPITLEIMRD----PVIIASGQTFERESVQKWFDSN---HRTCP  313 (643)
Q Consensus       277 CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~---~~~cP  313 (643)
                      ||||.+ |.+    |++++|||+||+.||++|+..+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 888    9999999999999999999954   44576

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.62  E-value=2.7e-08  Score=70.59  Aligned_cols=39  Identities=41%  Similarity=0.978  Sum_probs=36.2

Q ss_pred             cccCcccccCce-ecCCCCccchHHHHHHHh-cCCCCCCCc
Q 040749          277 CPITLEIMRDPV-IIASGQTFERESVQKWFD-SNHRTCPKT  315 (643)
Q Consensus       277 CpIc~~~m~dPv-~~~cg~ty~r~~I~~~~~-~~~~~cP~~  315 (643)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999999 666789986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=2.7e-08  Score=97.73  Aligned_cols=54  Identities=19%  Similarity=0.410  Sum_probs=47.6

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA  325 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  325 (643)
                      .+..+.|.+|++-+.||-.+||||.||++||..|..+.. .||.||...++..++
T Consensus       236 ~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~-eCPlCR~~~~pskvi  289 (293)
T KOG0317|consen  236 PEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA-ECPLCREKFQPSKVI  289 (293)
T ss_pred             CCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc-CCCcccccCCCccee
Confidence            345699999999999999999999999999999999754 599999998877653

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.59  E-value=1.8e-08  Score=76.18  Aligned_cols=58  Identities=22%  Similarity=0.452  Sum_probs=33.4

Q ss_pred             ccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHH
Q 040749          274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLI  334 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i  334 (643)
                      -++|++|.++|+.||.+ .|.|.||+.||.+.+..   .||.|+.|....++.-|..|.++|
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            47899999999999975 79999999999886643   499999999999999999998876

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.8e-06  Score=84.69  Aligned_cols=183  Identities=23%  Similarity=0.283  Sum_probs=148.8

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHH
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAII  451 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv  451 (643)
                      +.+.+.+..|+..|..++ ++-+|-..+...|+.+.++.++.+.+..+|+.|+++|+..+.+ +..+..+++.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lv-e~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELV-EDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHH-HhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            457888999999999999 7889999999999999999999999999999999999999885 56688899999999999


Q ss_pred             HHhcCC-CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhcc--CChhhHHHHHHHHHHhccCC-cchHHHHHc
Q 040749          452 EILQSG-STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQN--GTIRGKKDAVTALFNLSLNQ-ANKARAIDA  526 (643)
Q Consensus       452 ~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~-~n~~~lv~~  526 (643)
                      ..|.+. +..++..|..++++|-.+. .....+...++...|.+.+.+  .+...+..|+..+..|.... .....+-..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~  252 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSL  252 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHh
Confidence            999865 4677889999999887554 345556666779999999988  46778888998898887543 334444456


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          527 GIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       527 G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                      |....+..+....+..+.+.++..+..+..
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            666777777777777888888877766655

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.56  E-value=8.7e-08  Score=94.14  Aligned_cols=49  Identities=22%  Similarity=0.487  Sum_probs=41.0

Q ss_pred             CCccccccCcccccCc--------eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDP--------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dP--------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .++..||||++.+.+|        ++.+|||+||+.||.+|+.. ..+||.||.++..
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~~  228 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFIS  228 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEeeE
Confidence            4567899999987764        55689999999999999986 4689999998763

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.54  E-value=5.2e-08  Score=72.37  Aligned_cols=47  Identities=30%  Similarity=0.620  Sum_probs=40.5

Q ss_pred             CccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749          273 HEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +++.|+||++...++++.||||. ||..|+.+|+.. ...||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR-KKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT-TSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc-CCCCCcCChhhc
Confidence            35789999999999999999999 999999999984 568999999875

...

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=2.8e-06  Score=95.73  Aligned_cols=254  Identities=17%  Similarity=0.223  Sum_probs=183.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..++.+.+.|.++++.+|++|+.++..+.+.+|+.   +... .++.+.++|...|+.++..|+.++..+...++....+
T Consensus       114 ~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~~~  189 (526)
T PF01602_consen  114 PLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYKSL  189 (526)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHTTH
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhhhh
Confidence            45777888899999999999999999999776653   2222 5899999999999999999999999991111111111


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                       -...+..|.+++...++..+..++.+|..++........-  ...++.+..++++.++.+...++.++..+...+.   
T Consensus       190 -~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~---  263 (526)
T PF01602_consen  190 -IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE---  263 (526)
T ss_dssp             -HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---
T ss_pred             -HHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH---
Confidence             2334566666667888999999999999887543322200  4578889999998889999999999998876554   


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHHHHHhcCCH
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                        .-..+++.|+.++.++++.++-.++..|..++...  ...+ .  .....+..+. +.++.+|..++.+|..++..  
T Consensus       264 --~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~--  334 (526)
T PF01602_consen  264 --LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANE--  334 (526)
T ss_dssp             --HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--H--
T ss_pred             --HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccc--
Confidence              44457889999999888889999999999998754  2222 2  2333344555 67888999999999999853  


Q ss_pred             HHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHh
Q 040749          601 SFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLISK  639 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+...     +++.|...+. ..++..++.+...+..+..
T Consensus       335 ~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  335 SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            33333     5777777774 4477788888877776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=4.2e-08  Score=89.41  Aligned_cols=53  Identities=23%  Similarity=0.587  Sum_probs=45.4

Q ss_pred             CccccccCcccccC--ceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          273 HEFLCPITLEIMRD--PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       273 ~~f~CpIc~~~m~d--Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      .-|.||||++-+..  ||.+.|||.||+.||...++.++ .||.|++.+++..+.+
T Consensus       130 ~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~-~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTN-KCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccccccccchhHHHHHHHHHHHhCC-CCCCcccccchhhhee
Confidence            34999999999974  66678999999999999998765 7999999998877654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.48  E-value=1e-05  Score=83.95  Aligned_cols=271  Identities=14%  Similarity=0.109  Sum_probs=199.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhH---HHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENR---ILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r---~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      -...+.+|...++-....+.+.+..++.-....-   ..-..   ...|-..+.+ .+.+....++.+|-.+...++.|.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFGNCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhccccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhh
Confidence            5677888888888888888888888875443221   11111   2233344444 567777888999999999999999


Q ss_pred             HHHhcCChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749          440 LIAQQGAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  516 (643)
                      .++.+.++..++..+.+  .+..++....-++|-|+.++.....+...+.|+.|+.++++. ...+.+-.+.++.|+...
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999998843  357899999999999999988887786689999999999875 467788889999999876


Q ss_pred             Cc-------chHHHHHcCChHHHHHHhcc--CChhhHHHHHH-------HHHHHhCChhhH-------------------
Q 040749          517 QA-------NKARAIDAGIVLPLMNLLEE--RNLGMVDEALS-------ILLLLATHPEGR-------------------  561 (643)
Q Consensus       517 ~~-------n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~-------~L~~La~~~~~~-------------------  561 (643)
                      .+       ....|+..++.+.+-.+...  .|+++.+..-.       ....|++..+..                   
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~F  352 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKF  352 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccch
Confidence            63       23556666666655554443  56666544322       222333322222                   


Q ss_pred             -----HHhhcC--CcHHHHHHHHhcCC-hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHH
Q 040749          562 -----HKIGQL--SFIETLVEYIREGT-PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANAL  633 (643)
Q Consensus       562 -----~~i~~~--g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~l  633 (643)
                           ..+-+.  ..+..|+++|...+ |..-.-|+.=+....++.|+....+.+.|+=..++.++.+.+|++|-.|..+
T Consensus       353 W~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALla  432 (442)
T KOG2759|consen  353 WRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLA  432 (442)
T ss_pred             HHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHH
Confidence                 222222  35788899998654 7777777777888889999888888899999999999999999999999988


Q ss_pred             HHHH
Q 040749          634 LQLI  637 (643)
Q Consensus       634 L~~L  637 (643)
                      ++.|
T Consensus       433 vQ~l  436 (442)
T KOG2759|consen  433 VQKL  436 (442)
T ss_pred             HHHH
Confidence            8765

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.46  E-value=6.8e-06  Score=85.64  Aligned_cols=263  Identities=14%  Similarity=0.116  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHhcCCCHHH--HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcc-
Q 040749          361 KEEIVSLVEQLSSSKLEV--QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDES-  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~--~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~-  436 (643)
                      .+.+..|++++.+++.+.  +.+|.+.|..+.  ..+||+.++..| +..++.+-+ .+.++.+...+..|.++.++.+ 
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~--~aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQIL--VAENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHH--hhhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            467889999999987765  778888888776  468999999877 444444333 3456778888999999999754 


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      ....++++|+++.++...+..++.+..+++-+|.|++..  ...+..+++..+-..|..+-.+.+.-.+.+|+.|+.-|+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vla  335 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLA  335 (832)
T ss_pred             HHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhh
Confidence            467788999999999999988999999999999998865  457788888888889998887778888999999999999


Q ss_pred             cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      .+.+.-..+-+.|.+..+-.++.+.++.-...      .-..+..|+    ...-+..|+.+|++..-+.+  ++.+. .
T Consensus       336 t~KE~E~~VrkS~TlaLVEPlva~~DP~~FAR------D~hd~aQG~----~~d~LqRLvPlLdS~R~EAq--~i~AF-~  402 (832)
T KOG3678|consen  336 TNKEVEREVRKSGTLALVEPLVASLDPGRFAR------DAHDYAQGR----GPDDLQRLVPLLDSNRLEAQ--CIGAF-Y  402 (832)
T ss_pred             hhhhhhHHHhhccchhhhhhhhhccCcchhhh------hhhhhhccC----ChHHHHHhhhhhhcchhhhh--hhHHH-H
Confidence            88887776777776554444444434321110      000111111    12347788888874333333  33332 2


Q ss_pred             Hhc----CCHHH-HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          595 LGA----NNSSF-ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       595 L~~----~~~~~-~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +|.    .+.+. ...+-+-|+|+.|-++..+.+.-...-|...|+.+.+
T Consensus       403 l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  403 LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            222    11122 2233467999999999997777777888889988754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.44  E-value=1.1e-07  Score=92.52  Aligned_cols=67  Identities=13%  Similarity=0.230  Sum_probs=57.5

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHH
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWC  338 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  338 (643)
                      +..-++|-||.+.++-|++++||||||.-||.+++.. ++.||.|+.+....-+..+..++..++.+.
T Consensus        22 LDs~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          22 LDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             chhHHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            3445899999999999999999999999999999986 468999999888777777777777776654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.43  E-value=5.2e-06  Score=93.56  Aligned_cols=255  Identities=22%  Similarity=0.258  Sum_probs=185.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      -.+..+.+.|.++++..+.-|++.|.++.  +++....     .++.+.+++.++++.+|..|+.++..+....+.  .+
T Consensus        79 l~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~  149 (526)
T PF01602_consen   79 LIINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LV  149 (526)
T ss_dssp             HHHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CH
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HH
Confidence            46777888899999999999999999987  4443332     467889999999999999999999998763222  11


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhc-cccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~L-s~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                      ... .++.+..+|.+.++.++..|+.++..+ ...+...  -.-...++.|.+++...++-.+...+..|..++......
T Consensus       150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i~~~~~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~  226 (526)
T PF01602_consen  150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEIKCNDDSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED  226 (526)
T ss_dssp             HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHHHCTHHHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred             HHH-HHHHHhhhccCCcchhHHHHHHHHHHHccCcchhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence            122 588999999988999999999999999 2211111  011334555555556778888888888888776543332


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      ..  ....++.+..++.+.++.+.-.|+.++..+...+.     .-..+++.|..++.+.++..+..++..|..++...+
T Consensus       227 ~~--~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~  299 (526)
T PF01602_consen  227 AD--KNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP  299 (526)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH
T ss_pred             hh--HHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc
Confidence            21  14567888888888888999999999999888765     223678899999998889999999999999998763


Q ss_pred             HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ..    +. .....+..+..+.+..+|.+|..+|..+.+.
T Consensus       300 ~~----v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~  334 (526)
T PF01602_consen  300 PA----VF-NQSLILFFLLYDDDPSIRKKALDLLYKLANE  334 (526)
T ss_dssp             HH----HG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--H
T ss_pred             hh----hh-hhhhhhheecCCCChhHHHHHHHHHhhcccc
Confidence            22    22 2233344444478899999999999888753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.43  E-value=8.8e-08  Score=72.55  Aligned_cols=44  Identities=34%  Similarity=0.742  Sum_probs=31.4

Q ss_pred             CccccccCcccccCceec-CCCCccchHHHHHHHh-cCCCCCCCcC
Q 040749          273 HEFLCPITLEIMRDPVII-ASGQTFERESVQKWFD-SNHRTCPKTR  316 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~-~~~~~cP~~~  316 (643)
                      -.+.|||++..|.|||.- .|||+|++.+|.+|+. .+...||..+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            358999999999999985 8999999999999994 3455799854

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.5e-05  Score=81.65  Aligned_cols=178  Identities=19%  Similarity=0.131  Sum_probs=149.4

Q ss_pred             CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHH
Q 040749          457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNL  535 (643)
Q Consensus       457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~l  535 (643)
                      .+.+-++.|..-|..+..+-+|...+...|+..+++..+.+++..++..|++.|...+.+ +..+..+++.|+.+.|+.+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            367888888888999988888888999999999999999999999999999999998875 4456668899999999999


Q ss_pred             hcc-CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Q 040749          536 LEE-RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGV  611 (643)
Q Consensus       536 L~~-~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~  611 (643)
                      |.. .+..++..|+.++..|-. ++.+...+...++...|...+.+  .+...+..|+..+..|..........+...+.
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            986 444566899999999988 57889999999999999999998  56788999999999998877766666666777


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHH
Q 040749          612 YEHLIQLTEGGTSRAQRKANALL  634 (643)
Q Consensus       612 i~~L~~ll~~g~~~~k~~A~~lL  634 (643)
                      ...+..+..+....+++.|...+
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~  277 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTAL  277 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHH
Confidence            77777888888777777776543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.39  E-value=1.6e-07  Score=67.67  Aligned_cols=40  Identities=35%  Similarity=0.830  Sum_probs=33.8

Q ss_pred             ccccCccccc---CceecCCCCccchHHHHHHHhcCCCCCCCcC
Q 040749          276 LCPITLEIMR---DPVIIASGQTFERESVQKWFDSNHRTCPKTR  316 (643)
Q Consensus       276 ~CpIc~~~m~---dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~  316 (643)
                      .||||++.+.   .++.++|||.|+..||.+|++.. .+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~-~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRN-NSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHS-SB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhC-CcCCccC
Confidence            4999999995   45667999999999999999985 5899985

...

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=1.7e-06  Score=92.70  Aligned_cols=102  Identities=26%  Similarity=0.427  Sum_probs=82.7

Q ss_pred             ChhhHHHHHHHHHHHHHhhhhhcccCCCCCCchhhcccCCCCCCCCccccccCcccccCceecC-CCCccchHHHHHHHh
Q 040749          228 SSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFD  306 (643)
Q Consensus       228 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~  306 (643)
                      .+..++++..+..++++.-..+..+            +.+.+++||+|..|+...+|+|||++| +|-+.+|+-|..++-
T Consensus       820 s~~~IE~l~~f~nr~E~~r~~ea~E------------eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahll  887 (929)
T COG5113         820 SESQIEELRSFINRLEKVRVIEAVE------------EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLL  887 (929)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhhh------------hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHh
Confidence            3556777777777776644222211            234678999999999999999999997 789999999999998


Q ss_pred             cCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749          307 SNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN  342 (643)
Q Consensus       307 ~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  342 (643)
                      ++. +.|..|.|++-.+++||..||.-|..|....+
T Consensus       888 sd~-tDPFNRmPLtlddVtpn~eLrekIn~f~k~k~  922 (929)
T COG5113         888 SDG-TDPFNRMPLTLDDVTPNAELREKINRFYKCKG  922 (929)
T ss_pred             cCC-CCccccCCCchhhcCCCHHHHHHHHHHHhccc
Confidence            764 89999999999999999999999998865443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.38  E-value=2.4e-05  Score=83.95  Aligned_cols=217  Identities=18%  Similarity=0.207  Sum_probs=161.4

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhc-----CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 040749          361 KEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADC-----GAIPPLVQLLPYPDSKILEHAVTAVLNLSID  434 (643)
Q Consensus       361 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~-----g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~  434 (643)
                      ...+..++..|+. ...+.....+.-+..+...++..-..+.+.     ....+++.+|.++|.-++..|...|..+...
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~  131 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACF  131 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhc
Confidence            3567788888874 566777777778888887766655556554     3566777899989999999999999888653


Q ss_pred             cc-hHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHHHHH
Q 040749          435 ES-NKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAVTAL  510 (643)
Q Consensus       435 ~~-~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL  510 (643)
                      .. +.......-.+..+...|+++ +...+..++.+|..|...+.+|..+.+.++++.|+++|+..  ....++.++-++
T Consensus       132 ~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~l  211 (429)
T cd00256         132 GLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCI  211 (429)
T ss_pred             CccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHH
Confidence            22 111111111334556666654 47788889999999999999999998888999999999763  457889999999


Q ss_pred             HHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCCh-------hhHHHhhcCCcHHHHHHHHh
Q 040749          511 FNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHP-------EGRHKIGQLSFIETLVEYIR  578 (643)
Q Consensus       511 ~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~-------~~~~~i~~~g~i~~Lv~lL~  578 (643)
                      +-|+.+++....+...+.|+.|++++.. ..+.++.-++.+|.||...+       .....+++.|+.+ ++..|.
T Consensus       212 WlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~  286 (429)
T cd00256         212 WLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLE  286 (429)
T ss_pred             HHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHh
Confidence            9999998877777789999999999976 67889999999999998743       1233455555544 445554

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.35  E-value=2.5e-06  Score=74.95  Aligned_cols=153  Identities=18%  Similarity=0.129  Sum_probs=126.8

Q ss_pred             cCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749          444 QGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR  522 (643)
Q Consensus       444 ~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~  522 (643)
                      .+.+..|+.-... .+.++++...+-|.|.+.++.|-..+.+..++..+++-|...+...+..+...|+|+|..+.|...
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            3566777776654 578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      +++++++|..+..++++....+..|+..+..|+-. ..-+..+....++..+.+.-.+.+.+.+..|-..|-..|
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            99999999999999999888999999999999874 445777777666666665554555555555655555444

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.35  E-value=4.1e-07  Score=65.47  Aligned_cols=43  Identities=42%  Similarity=0.910  Sum_probs=38.4

Q ss_pred             ccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcc
Q 040749          276 LCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQT  318 (643)
Q Consensus       276 ~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~  318 (643)
                      .|+||++.+.+|+.++ |||.||..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999998888775 999999999999999867789999865

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.4e-05  Score=87.21  Aligned_cols=56  Identities=23%  Similarity=0.450  Sum_probs=50.6

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      ..-++||.|..-++|-||+.|||.||..||+..+....+.||.|+..+...++.|-
T Consensus       641 K~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I  696 (698)
T KOG0978|consen  641 KELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI  696 (698)
T ss_pred             HhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence            34589999999999999999999999999999999888999999999988877653

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.32  E-value=2.9e-06  Score=74.56  Aligned_cols=155  Identities=17%  Similarity=0.112  Sum_probs=133.2

Q ss_pred             hccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749          483 GLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR  561 (643)
Q Consensus       483 ~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  561 (643)
                      ...+.+..||.-... .+.+.++....-|.|.+.++-|-..+.+..++...+.-|...+..+++.+.+.|+|+|-.+.+.
T Consensus        13 ~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   13 DRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             cHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHH
Confidence            345667778877765 4778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      +.|.++++++.++..+.+....+...|+..|..||-.+...+..+....++..+.++..+.+.+-+--|...|...
T Consensus        93 ~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~  168 (173)
T KOG4646|consen   93 KFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKH  168 (173)
T ss_pred             HHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            9999999999999999888778888899999999998888888888888888888887666666666666666543

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=2.5e-06  Score=97.38  Aligned_cols=74  Identities=31%  Similarity=0.508  Sum_probs=68.2

Q ss_pred             CCCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN  342 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  342 (643)
                      ..++|++|..|+...+|+|||++| +|++.||.-|++++..+. +.|+||.+|+...+.||..+|.-|..|..+..
T Consensus       864 l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~-tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek~  938 (943)
T KOG2042|consen  864 LGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDC-TDPFNREPLTEDMVSPNEELKAKIRCWIKEKR  938 (943)
T ss_pred             hccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCC-CCccccccCchhhcCCCHHHHHHHHHHHHHhh
Confidence            457999999999999999999998 999999999999999754 79999999999999999999999999976543

>smart00184 RING Ring finger

Probab=98.26  E-value=8.6e-07  Score=61.47  Aligned_cols=39  Identities=46%  Similarity=1.041  Sum_probs=35.8

Q ss_pred             cccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCc
Q 040749          277 CPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKT  315 (643)
Q Consensus       277 CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~  315 (643)
                      ||||++...+|++++|||.||..|+..|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998666679986

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.23  E-value=7.7e-07  Score=93.27  Aligned_cols=69  Identities=30%  Similarity=0.627  Sum_probs=58.4

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKN  341 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  341 (643)
                      ...+++.||||++.+.+|++++|||+||+.||..++. ....||.|+. .. ..+.+|..+..++..+...+
T Consensus         9 ~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~-~~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    9 VLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PS-RNLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-ch-hccCccHHHHHHHHHHHhcC
Confidence            3567899999999999999999999999999999998 6678999996 22 27779999998888776543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=0.00032  Score=70.31  Aligned_cols=270  Identities=20%  Similarity=0.198  Sum_probs=177.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ....++.+|.+.++.++..|+..+..++..  ..+..... .-.++.+.+++...++  -+.|+++|.|++.+..-+..+
T Consensus         4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l   79 (353)
T KOG2973|consen    4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL   79 (353)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence            355788999999999999999998888854  33333322 3367888898887666  578899999999998888877


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--c----CChHHHHHHh-ccC-Ch-hhHHHHHHHHHH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--S----DGIPPLVDLL-QNG-TI-RGKKDAVTALFN  512 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~----g~i~~Lv~lL-~~~-~~-~~~~~A~~aL~n  512 (643)
                      ... .+..+++.+.+.........+.+|.||+..++....+..  .    .++..++..+ ..+ +. .-...-+..+.|
T Consensus        80 l~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~n  158 (353)
T KOG2973|consen   80 LQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFAN  158 (353)
T ss_pred             HHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHH
Confidence            766 888888888887666677788999999988765443321  1    3344444443 322 21 222345667778


Q ss_pred             hccCCcchHHHHHcCChHH--HHHHhccCChhhHH-HHHHHHHHHhCChhhHHHhhcCC--cHHHHH-------------
Q 040749          513 LSLNQANKARAIDAGIVLP--LMNLLEERNLGMVD-EALSILLLLATHPEGRHKIGQLS--FIETLV-------------  574 (643)
Q Consensus       513 Ls~~~~n~~~lv~~G~v~~--Lv~lL~~~~~~~~~-~Al~~L~~La~~~~~~~~i~~~g--~i~~Lv-------------  574 (643)
                      |+.....|..+.+...++.  |+.+ .+.+..++. -.+++|.|.|-.......+...+  .++.|+             
T Consensus       159 ls~~~~gR~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd  237 (353)
T KOG2973|consen  159 LSQFEAGRKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED  237 (353)
T ss_pred             HhhhhhhhhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence            9988888877766553332  2222 223333333 34677777776555555544421  122222             


Q ss_pred             --------HHHh-----cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 040749          575 --------EYIR-----EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISK  639 (643)
Q Consensus       575 --------~lL~-----~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~  639 (643)
                              +++-     ..+|.++..-+.+|..||... ..+..+...|+.+.|-++=... ++.+++....+..++.+
T Consensus       238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence                    2332     246788999999999999754 3456666778777777766544 67788877777777765

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=4.9e-05  Score=84.73  Aligned_cols=215  Identities=19%  Similarity=0.239  Sum_probs=168.9

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchH
Q 040749          361 KEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      ...++.|+.+|+. .+.+++..|+++|.+++.--|..-..+++.++||.|+.-| .-..-++-+.++.+|..++..  .-
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~--H~  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR--HP  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh--cc
Confidence            5689999999994 6899999999999999988888888999999999998844 445778889999999999852  23


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-  515 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-  515 (643)
                      ..|..+|++-..+..|.--+.-++..|.++..|++..  .+.-..+  ..++|.|..+|...+....+.++.++..++. 
T Consensus       288 ~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~  365 (1051)
T KOG0168|consen  288 KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCICLTRIADG  365 (1051)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            4567899999999999877788999999999998743  2222222  3589999999999988888989888888763 


Q ss_pred             --CCcc-hHHHHHcCChHHHHHHhccC----ChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhc
Q 040749          516 --NQAN-KARAIDAGIVLPLMNLLEER----NLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIRE  579 (643)
Q Consensus       516 --~~~n-~~~lv~~G~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~  579 (643)
                        +.++ -.++...|.|....++|.-.    +..+..-.+..|..+|+. +.........++...|..+|..
T Consensus       366 f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  366 FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence              3333 34577899999999998653    234445556777777764 8888888888888888888853

>PTZ00429 beta-adaptin; Provisional

Probab=98.19  E-value=0.00057  Score=78.87  Aligned_cols=256  Identities=16%  Similarity=0.130  Sum_probs=173.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ...+..++.+.+.+.+.++-.---+.+.++.+++.-..     ++..|.+=+.++++.+|..|+++|.++-..     .+
T Consensus        68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i  137 (746)
T PTZ00429         68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SV  137 (746)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HH
Confidence            45777888888999888887777788888666653211     467788888899999999999999887631     12


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                      + .-.++.+.+.|.+.++.+|..|+-++.++-..+.  ..+...|.++.|..+|.+.++.+..+|+.+|..+....+...
T Consensus       138 ~-e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l  214 (746)
T PTZ00429        138 L-EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI  214 (746)
T ss_pred             H-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh
Confidence            1 2246677788888999999999999999854322  334456889999999999999999999999999986554432


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC-H
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN-S  600 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~  600 (643)
                      . ...+.+..|+..|.+.++-.+-..+.+|...  .+......  ...+..+...|++.++.+.-.|+.++.++.... +
T Consensus       215 ~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~  289 (746)
T PTZ00429        215 E-SSNEWVNRLVYHLPECNEWGQLYILELLAAQ--RPSDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQ  289 (746)
T ss_pred             H-HHHHHHHHHHHHhhcCChHHHHHHHHHHHhc--CCCCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCH
Confidence            2 2344566677777654544455555555432  22221111  246777778888888999999999998887542 2


Q ss_pred             HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      .....+. ..+.++|+.+ .++++.+|--+..-|..+
T Consensus       290 ~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i  324 (746)
T PTZ00429        290 ELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHAL  324 (746)
T ss_pred             HHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHH
Confidence            2222211 1123455555 355667776666555544

>PHA02926 zinc finger-like protein; Provisional

Probab=98.14  E-value=1.5e-06  Score=82.45  Aligned_cols=51  Identities=18%  Similarity=0.432  Sum_probs=40.9

Q ss_pred             CCCccccccCcccccC---------ceecCCCCccchHHHHHHHhcC-----CCCCCCcCccccc
Q 040749          271 IPHEFLCPITLEIMRD---------PVIIASGQTFERESVQKWFDSN-----HRTCPKTRQTLAH  321 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~d---------Pv~~~cg~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~  321 (643)
                      ...+..|+||++...+         ++..+|+|+||..||.+|.+..     ..+||.||..+..
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence            4556889999998744         3566899999999999999852     3469999998763

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.11  E-value=5.2e-05  Score=82.72  Aligned_cols=272  Identities=15%  Similarity=0.074  Sum_probs=167.3

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhccCchh----HHH-HHhcC--CcHH--HHHhCCCCChHHHHHHHHHHHHhcC-Ccc
Q 040749          367 LVEQLSSSKLEVQKEAVRKIRLLSKENPEN----RIL-IADCG--AIPP--LVQLLPYPDSKILEHAVTAVLNLSI-DES  436 (643)
Q Consensus       367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~----r~~-i~~~g--~i~~--Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~  436 (643)
                      .-+++++++...+..++.++..+...+-..    ... +.+.|  -+-.  .+.++..+-.....+++..-+.++. -+.
T Consensus       237 v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sk  316 (678)
T KOG1293|consen  237 VTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASK  316 (678)
T ss_pred             hhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHh
Confidence            334555677777788888777766443111    111 11222  0110  0111111111111222222233331 233


Q ss_pred             hHHHHHhcCChHHHHHHhcC------CCHHHHHHHHHHHHhcccccc-----chhhhhccCChHHHHHHhccCChhhHHH
Q 040749          437 NKRLIAQQGAIPAIIEILQS------GSTEARENSAAALFSLSMLDE-----NKITIGLSDGIPPLVDLLQNGTIRGKKD  505 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~------~~~e~~~~Aa~~L~~Ls~~~~-----~k~~i~~~g~i~~Lv~lL~~~~~~~~~~  505 (643)
                      +.....+...++.+++++..      +.++.+..++.-...+.....     +++.+-+.-....+..+....+......
T Consensus       317 lq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aa  396 (678)
T KOG1293|consen  317 LQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAA  396 (678)
T ss_pred             hhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHH
Confidence            44445567778888887753      344444444433333322222     2233332222233333333446666777


Q ss_pred             HHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChH
Q 040749          506 AVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPK  583 (643)
Q Consensus       506 A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~  583 (643)
                      |+.++.+++.. ..-+..+-+..+..+|++++.+++..+...++++|.|+.. ...-+..+...|+|..+..++.+.++.
T Consensus       397 a~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n  476 (678)
T KOG1293|consen  397 ALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFN  476 (678)
T ss_pred             HHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCch
Confidence            77777776632 1112223446688999999999999999999999999976 677899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          584 NKECATAVLLELGANNSSFILAAL-QYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       584 ~~e~A~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      .+.+++|+|.++.-++.+..+... ..=....+..+..+.+..+++.+-.+||+|-
T Consensus       477 ~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  477 SRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence            999999999999988776555443 3334667888999999999999999999884

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.3e-06  Score=84.84  Aligned_cols=53  Identities=19%  Similarity=0.345  Sum_probs=46.6

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHH-HHhcCCCCCCCcCcccccCCC
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQK-WFDSNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~-~~~~~~~~cP~~~~~l~~~~l  324 (643)
                      ..+|.|+||++.+.+|+.++|||.||..||-. |-.+....||.|++......+
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            46899999999999999999999999999999 888776679999987665443

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.00014  Score=84.18  Aligned_cols=235  Identities=17%  Similarity=0.153  Sum_probs=153.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKRLI  441 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~~i  441 (643)
                      ..+.+-.+|.|.+|..|..|+.+|..++.+..+.-.... ...++..++.|..+++.+|..|+.+++.++.+= ..-..-
T Consensus       349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~  427 (1075)
T KOG2171|consen  349 LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKK  427 (1075)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHH
Confidence            466677788899999999999999999854433222211 347888899999999999999999999999853 223333


Q ss_pred             HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhc--cCChH-HHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          442 AQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGL--SDGIP-PLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~-~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ...-.++.|+..+.+. +++++.+|+.+|.|++..-.. ..+.-  .+.+. .+..++.++++.+++.++++|...+...
T Consensus       428 ~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~-~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA  506 (1075)
T KOG2171|consen  428 HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK-SILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAA  506 (1075)
T ss_pred             HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence            3455777888888764 689999999999999864322 22221  35555 3334556789999999999999888654


Q ss_pred             cchHHHHHcCChHHHHHHhccCC-hhhHHHHHHHHHHHhC--ChhhHHHhhc--CCcHHHHHHH---HhcCChHHHHHHH
Q 040749          518 ANKARAIDAGIVLPLMNLLEERN-LGMVDEALSILLLLAT--HPEGRHKIGQ--LSFIETLVEY---IREGTPKNKECAT  589 (643)
Q Consensus       518 ~n~~~lv~~G~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~--~~~~~~~i~~--~g~i~~Lv~l---L~~~s~~~~e~A~  589 (643)
                      +..-.=--.-.+|.|.++|...+ .+.++....++..++.  ..-|++.+..  ..++..+..+   ....+...++.-.
T Consensus       507 ~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~  586 (1075)
T KOG2171|consen  507 QEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMI  586 (1075)
T ss_pred             hhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHH
Confidence            44322222446777888876633 4444444433333322  2345555544  1334444444   2223455667777


Q ss_pred             HHHHHHhcCC
Q 040749          590 AVLLELGANN  599 (643)
Q Consensus       590 ~~L~~L~~~~  599 (643)
                      ..-.++|+.-
T Consensus       587 ~~warmc~il  596 (1075)
T KOG2171|consen  587 AFWARMCRIL  596 (1075)
T ss_pred             HHHHHHHHHh
Confidence            7777777643

>PF05536 Neurochondrin: Neurochondrin

Probab=98.07  E-value=0.00022  Score=79.93  Aligned_cols=233  Identities=18%  Similarity=0.152  Sum_probs=164.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchh---HHHHHhcCCcHHHHHhCCCC-------ChHHHHHHHHHHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPEN---RILIADCGAIPPLVQLLPYP-------DSKILEHAVTAVLN  430 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~---r~~i~~~g~i~~Lv~lL~~~-------d~~~~~~a~~~L~n  430 (643)
                      ...+...+.+|++.+.+.+--++--+.++.+.++..   ++.+.++=+.+.|-++|.++       ....+.-|+.+|..
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~   83 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAA   83 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHH
Confidence            356888999999988777778888888998776633   44577777788899999873       34567789999999


Q ss_pred             hcCCcchH--HHHHhcCChHHHHHHhcCCCH-HHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHH
Q 040749          431 LSIDESNK--RLIAQQGAIPAIIEILQSGST-EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV  507 (643)
Q Consensus       431 Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~  507 (643)
                      ++.+++..  ..+  .+-||.|++++.+.+. ++...|..+|..++..++.+..+.+.|+++.|++.+.+ ....+..|+
T Consensus        84 f~~~~~~a~~~~~--~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   84 FCRDPELASSPQM--VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HcCChhhhcCHHH--HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            99877653  334  3569999999987776 99999999999999999999999999999999999987 566788999


Q ss_pred             HHHHHhccCCcchHHHH----HcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHhhcCCc----HHHHHHHH
Q 040749          508 TALFNLSLNQANKARAI----DAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG--RHKIGQLSF----IETLVEYI  577 (643)
Q Consensus       508 ~aL~nLs~~~~n~~~lv----~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~----i~~Lv~lL  577 (643)
                      .++.+++........--    -..+++.+...+.......+-.++..|..+-...+.  .........    ...|..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            99999876443211000    023445555555554445566677778777554321  122222233    34455566


Q ss_pred             hcC-ChHHHHHHHHHHHHHh
Q 040749          578 REG-TPKNKECATAVLLELG  596 (643)
Q Consensus       578 ~~~-s~~~~e~A~~~L~~L~  596 (643)
                      ++. ++..|..|+.+...|.
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHH
Confidence            553 4666666655554443

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=2e-06  Score=91.08  Aligned_cols=71  Identities=23%  Similarity=0.384  Sum_probs=57.6

Q ss_pred             ccccccCcccccCceecCCCCccchHHHHHHHhc----CCCCCCCcCcccccCCCCcc----HHHHHHHHHHHHhcccc
Q 040749          274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS----NHRTCPKTRQTLAHLSIAPN----YALKNLILQWCEKNNFK  344 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~l~pn----~~l~~~i~~~~~~~~~~  344 (643)
                      +..||||++...-|+.+.|||.||..||-++|..    +...||.|+..+...++.|-    ..-+.-+...+..||.+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~qkke~l~~~~~~ng~~  264 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDDQKKEELKLHQDPNGIP  264 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccccccHHHHHHhcccCCC
Confidence            7899999999999999999999999999999984    45679999999888776653    22334467778888843

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.05  E-value=0.00017  Score=78.72  Aligned_cols=152  Identities=16%  Similarity=0.103  Sum_probs=115.7

Q ss_pred             CCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHH
Q 040749          456 SGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLM  533 (643)
Q Consensus       456 ~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv  533 (643)
                      ..+...+..|+-++.+++.. +..+.-.....++.+||.++..++..++..++++|.||.. ..+-+..+++.|+|..+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~  467 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE  467 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence            34455555555555555422 2333334456789999999999999999999999999986 667799999999999999


Q ss_pred             HHhccCChhhHHHHHHHHHHHhCChhhH--HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749          534 NLLEERNLGMVDEALSILLLLATHPEGR--HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL  607 (643)
Q Consensus       534 ~lL~~~~~~~~~~Al~~L~~La~~~~~~--~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~  607 (643)
                      +++.+.+..++..++++|.++.-+.+..  .+....=....++.+..+.++.++|.+...|.|+.++..+.+..++
T Consensus       468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll  543 (678)
T KOG1293|consen  468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLL  543 (678)
T ss_pred             HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHH
Confidence            9999999999999999999998754433  3333323345677788889999999999999999888665554444

>PF05536 Neurochondrin: Neurochondrin

Probab=98.03  E-value=8.8e-05  Score=83.02  Aligned_cols=189  Identities=19%  Similarity=0.166  Sum_probs=134.3

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccccc----chhhhhccCChHHHHHHhccC-------ChhhHHHHHHHHHHhc
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDE----NKITIGLSDGIPPLVDLLQNG-------TIRGKKDAVTALFNLS  514 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~-------~~~~~~~A~~aL~nLs  514 (643)
                      .+...+.+|+..+.+-|-.+...+.++...++    .+..+.+.=+.+.|-+||+++       ....+.-|+..|..+|
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            46777889988886666677777778775443    233466665578899999874       2455667788888888


Q ss_pred             cCCcch--HHHHHcCChHHHHHHhccCCh-hhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749          515 LNQANK--ARAIDAGIVLPLMNLLEERNL-GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       515 ~~~~n~--~~lv~~G~v~~Lv~lL~~~~~-~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                      ..++..  .+++  +-||.|++.+...+. .++..|+.+|..++.+++|++.+.+.|+++.|++.+.+ .+...+.|+.+
T Consensus        86 ~~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            865553  3344  469999999988666 99999999999999999999999999999999999987 67889999999


Q ss_pred             HHHHhcCCHHHHHHHHH---CCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          592 LLELGANNSSFILAALQ---YGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       592 L~~L~~~~~~~~~~~~~---~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      |.+++.........-..   ..+++.|...........|-.+..+|..+
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~  211 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAF  211 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHh
Confidence            99998754421111000   12344454444444444444455555443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00016  Score=80.14  Aligned_cols=213  Identities=20%  Similarity=0.145  Sum_probs=165.9

Q ss_pred             CcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhcccccc----
Q 040749          405 AIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLDE----  477 (643)
Q Consensus       405 ~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~~----  477 (643)
                      .|+.|+.-+.+ .-.+-|..|+..|-.+|.  .+|..+ .+.++++|+++|..+  ++++...+..++.++...++    
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~V-ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v   99 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEV-GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEV   99 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHH-HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhh
Confidence            35555554443 345668889999988873  344444 456799999999865  68999999999999876653    


Q ss_pred             ---ch----------h-hhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc--hHH-HHHcCChHHHHHHhccCC
Q 040749          478 ---NK----------I-TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN--KAR-AIDAGIVLPLMNLLEERN  540 (643)
Q Consensus       478 ---~k----------~-~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--~~~-lv~~G~v~~Lv~lL~~~~  540 (643)
                         .+          . .|-..+.|..|+..+...+-.++..|...|.+|..+.+-  +.. ++-.-+|..|+.+|.+..
T Consensus       100 ~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~Dsr  179 (970)
T KOG0946|consen  100 MDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSR  179 (970)
T ss_pred             cccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhh
Confidence               22          1 122478899999999999999999999999998765444  333 344778999999999988


Q ss_pred             hhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhc-C-C--hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749          541 LGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIRE-G-T--PKNKECATAVLLELGANNSSFILAALQYGVYEHL  615 (643)
Q Consensus       541 ~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~-~-s--~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L  615 (643)
                      +.++.+++-.|..|.......+.++. .+++..|..++.. | .  .-+.+-|+..|.+|-.++..+...+.+.+.+|.|
T Consensus       180 E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL  259 (970)
T KOG0946|consen  180 EPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRL  259 (970)
T ss_pred             hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHH
Confidence            89999999999999986655555554 6899999999985 2 2  3468899999999999999999999999999999


Q ss_pred             HHHhh
Q 040749          616 IQLTE  620 (643)
Q Consensus       616 ~~ll~  620 (643)
                      ..++.
T Consensus       260 ~klL~  264 (970)
T KOG0946|consen  260 LKLLS  264 (970)
T ss_pred             HhhcC
Confidence            97763

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.01  E-value=7.3e-06  Score=82.99  Aligned_cols=53  Identities=21%  Similarity=0.420  Sum_probs=42.5

Q ss_pred             CccccccCccc-ccCce---ec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC
Q 040749          273 HEFLCPITLEI-MRDPV---II-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA  325 (643)
Q Consensus       273 ~~f~CpIc~~~-m~dPv---~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~  325 (643)
                      ++..||+|... ...|-   .+ +|||.||.+|+.++|..+...||.|+.++....+.
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            45789999984 33452   23 79999999999999988878899999999877643

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=1.1e-06  Score=88.59  Aligned_cols=69  Identities=20%  Similarity=0.393  Sum_probs=57.7

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC-CCCccHHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL-SIAPNYALKNLILQWC  338 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~  338 (643)
                      .+..+|.||||+++++...++ .|+|.||+.||-+-+..++..||.|++.+.+. .+.+++..-.+|.+.-
T Consensus        39 ~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   39 MFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             HhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            466789999999999998887 49999999999999999999999999998754 5666666666776544

>PTZ00429 beta-adaptin; Provisional

Probab=98.01  E-value=0.0012  Score=76.35  Aligned_cols=253  Identities=15%  Similarity=0.116  Sum_probs=168.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ++.+..+-..|.+.+...++.|++.+-.....+.+.      ..+.+..++++.+.|.+++.-..-.|.+.+........
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal  104 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL  104 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH
Confidence            456777778888888888888887544333222221      12556778889999999998888888888764433322


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                      +    ++..+.+=+.+.++.+|..|+.+|+++-...-      -.-.++++.+.+.+.++-+++.|+.++..+-...+. 
T Consensus       105 L----aINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i------~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-  173 (746)
T PTZ00429        105 L----AVNTFLQDTTNSSPVVRALAVRTMMCIRVSSV------LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-  173 (746)
T ss_pred             H----HHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-
Confidence            2    46677778888899999999999998743211      122456677778888999999999999998654442 


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                       .+.+.|.++.|.++|.+.++.++.+|+.+|..+.......-. ...+.+..|+..+...++..+-..+.+|..   ..|
T Consensus       174 -lv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P  248 (746)
T PTZ00429        174 -LFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP  248 (746)
T ss_pred             -cccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC
Confidence             234678889999999999999999999999999764322211 223456667777766677777666555533   322


Q ss_pred             HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          601 SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       601 ~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ......  ..++..+...+++.++.+.-.|.+++-.+
T Consensus       249 ~~~~e~--~~il~~l~~~Lq~~N~AVVl~Aik~il~l  283 (746)
T PTZ00429        249 SDKESA--ETLLTRVLPRMSHQNPAVVMGAIKVVANL  283 (746)
T ss_pred             CCcHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            111111  23455555555555655555555544433

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=97.99  E-value=5e-06  Score=59.79  Aligned_cols=41  Identities=27%  Similarity=0.538  Sum_probs=34.8

Q ss_pred             ccccCcccc---cCceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749          276 LCPITLEIM---RDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ  317 (643)
Q Consensus       276 ~CpIc~~~m---~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~  317 (643)
                      .|++|.+.+   ..|++++|||+||..|+.++. .....||.|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999999   357888999999999999998 44568999974

>TIGR02270 conserved hypothetical protein

Probab=97.96  E-value=0.00068  Score=73.14  Aligned_cols=208  Identities=14%  Similarity=0.009  Sum_probs=96.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ  443 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~  443 (643)
                      +..++..|.+.++.++..++..|..+-           ..+..+.|+.+|+++++.++..++.++..           ..
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~-----------~~~a~~~L~~~L~~~~p~vR~aal~al~~-----------r~  145 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG-----------GRQAEPWLEPLLAASEPPGRAIGLAALGA-----------HR  145 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC-----------chHHHHHHHHHhcCCChHHHHHHHHHHHh-----------hc
Confidence            444555555444445555544444332           11234455555555555555554444433           11


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHH
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA  523 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~l  523 (643)
                      ....+.++.+|++.++.++..|+.+|..+-          ...+++.|...+.+.++.++..|+.++..+-.        
T Consensus       146 ~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--------  207 (410)
T TIGR02270       146 HDPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS--------  207 (410)
T ss_pred             cChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------
Confidence            123345555555555555555555555442          23344555555555555555555555533321        


Q ss_pred             HHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH
Q 040749          524 IDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFI  603 (643)
Q Consensus       524 v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~  603 (643)
                        ..++..+..+...........+..++... ..         ...+..|..+++.  +.++..++.+|..+..      
T Consensus       208 --~~A~~~l~~~~~~~g~~~~~~l~~~lal~-~~---------~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~------  267 (410)
T TIGR02270       208 --RLAWGVCRRFQVLEGGPHRQRLLVLLAVA-GG---------PDAQAWLRELLQA--AATRREALRAVGLVGD------  267 (410)
T ss_pred             --HhHHHHHHHHHhccCccHHHHHHHHHHhC-Cc---------hhHHHHHHHHhcC--hhhHHHHHHHHHHcCC------
Confidence              11222333322222222222222222221 11         1344555555544  2366666666655532      


Q ss_pred             HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          604 LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       604 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                           ...++.|+..+.+.  ..++.|...++.+-
T Consensus       268 -----p~av~~L~~~l~d~--~~aR~A~eA~~~It  295 (410)
T TIGR02270       268 -----VEAAPWCLEAMREP--PWARLAGEAFSLIT  295 (410)
T ss_pred             -----cchHHHHHHHhcCc--HHHHHHHHHHHHhh
Confidence                 24677777766533  37777777776653

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.96  E-value=0.0023  Score=68.32  Aligned_cols=271  Identities=17%  Similarity=0.181  Sum_probs=186.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      .+.+...+-+++.+++..+.+.+|.+. .++..-..+.+.+.=-.++..|..+  +..-+++|+..+..+.....+...+
T Consensus        27 ~~~i~~~lL~~~~~vraa~yRilRy~i-~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   27 GERIQCMLLSDSKEVRAAGYRILRYLI-SDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            334443455556888888999999888 5666777777777666667777654  3445778988888776554433333


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                       ..|.+..++.+..+.+...+..|..+|..++..+  ...+...|++..|++.+-++........+.++..+..++..|.
T Consensus       106 -~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~  182 (371)
T PF14664_consen  106 -PRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRK  182 (371)
T ss_pred             -CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhh
Confidence             5678899999999988999999999999998642  3445678999999999988877788888888989988888887


Q ss_pred             HHHHcCChHHHHHHhccC-------Ch--hhHHHHHHHHHHHhCChhhHHHhhcC--CcHHHHHHHHhcCChHHHHHHHH
Q 040749          522 RAIDAGIVLPLMNLLEER-------NL--GMVDEALSILLLLATHPEGRHKIGQL--SFIETLVEYIREGTPKNKECATA  590 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~-------~~--~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~  590 (643)
                      .+...--+..++.-+.+.       +.  +....+..++..+-.+-.|--.+...  .++..|+..|...++..|+..+.
T Consensus       183 yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ild  262 (371)
T PF14664_consen  183 YLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILD  262 (371)
T ss_pred             hhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHH
Confidence            766544455555555432       11  12333444444443433343333332  46777777777777777777777


Q ss_pred             HHHHHhc-------------------CCH-----------------------------HH----HHHHHHCCcHHHHHHH
Q 040749          591 VLLELGA-------------------NNS-----------------------------SF----ILAALQYGVYEHLIQL  618 (643)
Q Consensus       591 ~L~~L~~-------------------~~~-----------------------------~~----~~~~~~~g~i~~L~~l  618 (643)
                      +|..+-.                   +..                             .+    ...+++.|.++.|+++
T Consensus       263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~l  342 (371)
T PF14664_consen  263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVEL  342 (371)
T ss_pred             HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHH
Confidence            7665542                   000                             00    1123478999999999


Q ss_pred             hhcC-CHHHHHHHHHHHHHHH
Q 040749          619 TEGG-TSRAQRKANALLQLIS  638 (643)
Q Consensus       619 l~~g-~~~~k~~A~~lL~~L~  638 (643)
                      +.+. ++...+||.-+|..+-
T Consensus       343 i~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  343 IESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HhcCCCchHHHHHHHHHHHHH
Confidence            9988 8889999999988653

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.94  E-value=0.00062  Score=78.97  Aligned_cols=257  Identities=18%  Similarity=0.199  Sum_probs=163.7

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcC--CcHHHHHhCCCC--C--------------hHHHHHHHHHHHHhcCCcc
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIADCG--AIPPLVQLLPYP--D--------------SKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~~--d--------------~~~~~~a~~~L~nLs~~~~  436 (643)
                      +...|..|+..|..+++..|...+.....|  .++.++.++-..  |              ..--..|..+|-.+|.+=.
T Consensus       262 ~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~  341 (1075)
T KOG2171|consen  262 ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLG  341 (1075)
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCC
Confidence            566777888888777755443333333322  344555544321  1              0123456666666665433


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      ++..+  .-.++.+-.+|.+.++.-|..+.-+|..++... .+..++. +..++.+++.|++.+++++..|+.|+..++.
T Consensus       342 g~~v~--p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~st  418 (1075)
T KOG2171|consen  342 GKQVL--PPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMST  418 (1075)
T ss_pred             hhheh--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhh
Confidence            33322  334566667888999999998888888776421 1222233 5778888889999999999999999999986


Q ss_pred             C-CcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhc---CCcHH-HHHHHHhcCChHHHHHHH
Q 040749          516 N-QANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQ---LSFIE-TLVEYIREGTPKNKECAT  589 (643)
Q Consensus       516 ~-~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~---~g~i~-~Lv~lL~~~s~~~~e~A~  589 (643)
                      + .+...+--..-+++.|+..+.+ .++.+..+|+.+|-|++..-.+  .++.   .+.+. .+..++.++++.+++.++
T Consensus       419 dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~--~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vv  496 (1075)
T KOG2171|consen  419 DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK--SILEPYLDGLMEKKLLLLLQSSKPYVQEQAV  496 (1075)
T ss_pred             hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH--HHHHHHHHHHHHHHHHHHhcCCchhHHHHHH
Confidence            4 4445555556678889999987 5668899999999888653221  1222   24444 334455678899999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC-H---HHHHHHHHHHHHH
Q 040749          590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGT-S---RAQRKANALLQLI  637 (643)
Q Consensus       590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~-~---~~k~~A~~lL~~L  637 (643)
                      .++...+.........- -...||.|..++.+.+ .   ..|.|...++..+
T Consensus       497 taIasvA~AA~~~F~pY-~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli  547 (1075)
T KOG2171|consen  497 TAIASVADAAQEKFIPY-FDRLMPLLKNFLQNADDKDLRELRGKTMECLSLI  547 (1075)
T ss_pred             HHHHHHHHHHhhhhHhH-HHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHH
Confidence            99999986433221111 1347899999998876 2   2344444444443

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.87  E-value=1.6e-05  Score=56.26  Aligned_cols=40  Identities=50%  Similarity=0.765  Sum_probs=38.1

Q ss_pred             CchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749          393 NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS  432 (643)
Q Consensus       393 ~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs  432 (643)
                      +++++..+++.|++|.|+++|++++.+++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0018  Score=67.93  Aligned_cols=238  Identities=15%  Similarity=0.109  Sum_probs=176.9

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC------cch----HHHHHhcCChHHH
Q 040749          381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID------ESN----KRLIAQQGAIPAI  450 (643)
Q Consensus       381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~------~~~----k~~i~~~g~i~~L  450 (643)
                      ..+..+..++ .-|+..-.+++.++++.|+.+|.+++.++....+..|-.|.-.      .++    -..+++.++++.|
T Consensus       103 d~IQ~mhvlA-t~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  103 DIIQEMHVLA-TMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHHhhh-cChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            4555666666 6788888899999999999999999999999999999988742      222    2345578889998


Q ss_pred             HHHhcCC------CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC--ChhhHHHHHHHHHHhccC-Ccch
Q 040749          451 IEILQSG------STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG--TIRGKKDAVTALFNLSLN-QANK  520 (643)
Q Consensus       451 v~lL~~~------~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~~aL~nLs~~-~~n~  520 (643)
                      ++-+..-      ......++.+++-|+... ++....+++.|.+..|+.-+...  -..-+..|...|.-+..+ ++|+
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            8866532      234567788888888755 45666777788888888755433  234566777777766554 4577


Q ss_pred             HHHHHcCChHHHHHHhcc---C------ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749          521 ARAIDAGIVLPLMNLLEE---R------NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~---~------~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                      ...-...++..+++-+.-   .      ...+.++-...|+.+-..++++..+....++....-+++. ....+..|+.+
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence            777788888888877642   2      3456777888888888899999999998888877777765 44567889999


Q ss_pred             HHHHhcCCH--HHHHHHHHCCcHHHHHHHhh
Q 040749          592 LLELGANNS--SFILAALQYGVYEHLIQLTE  620 (643)
Q Consensus       592 L~~L~~~~~--~~~~~~~~~g~i~~L~~ll~  620 (643)
                      |-....+.+  .+|...++.++...++.+-.
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            999887765  78888888877777776554

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.83  E-value=1.7e-05  Score=63.81  Aligned_cols=39  Identities=36%  Similarity=0.764  Sum_probs=31.9

Q ss_pred             cccCcccccCc-------------eecCCCCccchHHHHHHHhcCCCCCCCcC
Q 040749          277 CPITLEIMRDP-------------VIIASGQTFERESVQKWFDSNHRTCPKTR  316 (643)
Q Consensus       277 CpIc~~~m~dP-------------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~  316 (643)
                      |+||++.+.+|             +..+|||.|...||.+|+..+. +||.|+
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~-~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN-TCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS-B-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC-cCCCCC
Confidence            99999999433             3347999999999999998755 899996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.78  E-value=0.0022  Score=67.84  Aligned_cols=187  Identities=26%  Similarity=0.315  Sum_probs=140.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..+..+++.+.+.++.++..|+..+..+..           .-++|.|..+|...++.++..|+.+|+++-         
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~---------  102 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGELG---------  102 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHccC---------
Confidence            468899999999999999999988766552           227899999999999999999999876654         


Q ss_pred             HhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChh------------hHHHHHH
Q 040749          442 AQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR------------GKKDAVT  508 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~------------~~~~A~~  508 (643)
                       ...+++.++..|. +.+..+|..++.+|..+-.          ..++.+++..+.+....            .+..++.
T Consensus       103 -~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         103 -DPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             -ChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence             4568899999998 4789999999999998843          44578888888775522            2333333


Q ss_pred             HHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHH
Q 040749          509 ALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECA  588 (643)
Q Consensus       509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A  588 (643)
                      +|..+          -+...++.+..++.+....++..|...|..+....        ......+...+.+.+..++..+
T Consensus       172 ~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~  233 (335)
T COG1413         172 ALGEL----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------VEAADLLVKALSDESLEVRKAA  233 (335)
T ss_pred             HHHHc----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHH
Confidence            33322          23446788899998888889999999998887654        3455677777777777777777


Q ss_pred             HHHHHHHhc
Q 040749          589 TAVLLELGA  597 (643)
Q Consensus       589 ~~~L~~L~~  597 (643)
                      +..|..+..
T Consensus       234 ~~~l~~~~~  242 (335)
T COG1413         234 LLALGEIGD  242 (335)
T ss_pred             HHHhcccCc
Confidence            777665543

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.77  E-value=0.00034  Score=76.40  Aligned_cols=271  Identities=16%  Similarity=0.125  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD----CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      ...++.|.++|.+.+...+.-|..+|..++.++.+.-+.-.-    .-.+|.++++.+++++.+|.+|+.++....... 
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~-  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ-  205 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC-
Confidence            367999999999999899999999999999665543222111    136899999999999999999999886655432 


Q ss_pred             hHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          437 NKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       437 ~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      ++..+. -...+..+..+-...++++|.+.+.+|..|......|-.=.-.+.+.-.+..-++.+..+...|+.....++.
T Consensus       206 ~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  206 TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            222222 2345666666666778999999999999987543332211114566666666677788888999998888887


Q ss_pred             CCcchHHHHH--cCChHHHHHHhccCC-----------------------------------------------------
Q 040749          516 NQANKARAID--AGIVLPLMNLLEERN-----------------------------------------------------  540 (643)
Q Consensus       516 ~~~n~~~lv~--~G~v~~Lv~lL~~~~-----------------------------------------------------  540 (643)
                      .+--+..+..  ...+|.|+.-+...+                                                     
T Consensus       286 qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~  365 (885)
T KOG2023|consen  286 QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDA  365 (885)
T ss_pred             CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccc
Confidence            7733333322  445666654322111                                                     


Q ss_pred             ---hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh----cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Q 040749          541 ---LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR----EGTPKNKECATAVLLELGANNSSFILAALQYGVYE  613 (643)
Q Consensus       541 ---~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~----~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~  613 (643)
                         ..++...+++|-.|+.       +....+++.++.+|+    +..-.+||.++-+|..++.+.-.....-+ ...+|
T Consensus       366 ~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L-peLip  437 (885)
T KOG2023|consen  366 FSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL-PELIP  437 (885)
T ss_pred             cccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch-HHHHH
Confidence               1122222222222221       122234555555554    44456789999999888875432111100 23688


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          614 HLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       614 ~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .|++++.+..+-+|.-..+.|...+.+
T Consensus       438 ~l~~~L~DKkplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  438 FLLSLLDDKKPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             HHHHHhccCccceeeeeeeeHhhhhhh
Confidence            899999999988888888887766543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.77  E-value=0.00089  Score=69.94  Aligned_cols=232  Identities=16%  Similarity=0.140  Sum_probs=167.2

Q ss_pred             HHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          366 SLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       366 ~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      .+...+++ .+.+...-|+++|..+.+ -++.|..++.+.++..++..|.+  .+-.+|.+.+-+++-|+.++...+.+.
T Consensus       160 ~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~  238 (442)
T KOG2759|consen  160 FLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLK  238 (442)
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHhc-CcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHh
Confidence            34444444 566667788889998884 57899999999999999998843  377899999999999999988887777


Q ss_pred             hcCChHHHHHHhcCCC-HHHHHHHHHHHHhcccccc---chhhhh---ccCChHHHHHHhccC---ChhhHHHH------
Q 040749          443 QQGAIPAIIEILQSGS-TEARENSAAALFSLSMLDE---NKITIG---LSDGIPPLVDLLQNG---TIRGKKDA------  506 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~---~k~~i~---~~g~i~~Lv~lL~~~---~~~~~~~A------  506 (643)
                      ..+.|+.|+++++... ..+....++++.|+.....   .+..+.   -.+.++.-++.|...   +++...+.      
T Consensus       239 ~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~  318 (442)
T KOG2759|consen  239 RFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEK  318 (442)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7889999999998764 5677778888999876542   222222   245566666666543   22222111      


Q ss_pred             -HHHHHHhccCC------------------------cchHHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhC-C
Q 040749          507 -VTALFNLSLNQ------------------------ANKARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLAT-H  557 (643)
Q Consensus       507 -~~aL~nLs~~~------------------------~n~~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~-~  557 (643)
                       -.-...||+.+                        +|..++-+  -.++..|+++|.. .++.+..-|+.=+..... +
T Consensus       319 L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y  398 (442)
T KOG2759|consen  319 LKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY  398 (442)
T ss_pred             HHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC
Confidence             11122233322                        23333333  3367889999976 557777778877777776 7


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      |+|+..+.+.|+=..++++|.+.+|++|-+|+.++..|..+
T Consensus       399 P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~  439 (442)
T KOG2759|consen  399 PEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH  439 (442)
T ss_pred             chHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999998877543

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.68  E-value=2.2e-05  Score=78.95  Aligned_cols=65  Identities=15%  Similarity=0.374  Sum_probs=53.3

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC----CCCccHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL----SIAPNYALKNLIL  335 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~  335 (643)
                      ++.....|++|..+|.|+.++ .|=||||++||-+++.. ..+||.|+-.+...    .+.++..|+.++-
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVy   80 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVY   80 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHH
Confidence            466778999999999999876 69999999999999998 56899997766543    4566677777663

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.68  E-value=0.0042  Score=66.28  Aligned_cols=250  Identities=13%  Similarity=0.110  Sum_probs=172.3

Q ss_pred             HHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC--CHHHH
Q 040749          385 KIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG--STEAR  462 (643)
Q Consensus       385 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~  462 (643)
                      .|..+.+.++..|..+.-....+.+..++-+++.+++..+.+++..+..+.+.-..+...+.--.++.-|...  +..-|
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHH
Confidence            4444555666666555544455566554445559999999999999999998888888877666677777643  45568


Q ss_pred             HHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChh
Q 040749          463 ENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLG  542 (643)
Q Consensus       463 ~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~  542 (643)
                      ++|...+..+...+..... ...|.+.+++.+..+.+++.+..|+.+|..|+..++  ..++.+|++..|++.+.++...
T Consensus        86 ~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~  162 (371)
T PF14664_consen   86 EQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFS  162 (371)
T ss_pred             HHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHh
Confidence            8999988887655433222 246889999999999889999999999999986433  3456899999999999886666


Q ss_pred             hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-------Ch--HHHHHHHHHHHHHhcCCHHHHHHHHH-CCcH
Q 040749          543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-------TP--KNKECATAVLLELGANNSSFILAALQ-YGVY  612 (643)
Q Consensus       543 ~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-------s~--~~~e~A~~~L~~L~~~~~~~~~~~~~-~g~i  612 (643)
                      +.+..+.++..+-.+|..|+.+...--+..++.-..+.       +.  ..-..+..++..+-+.=+.......+ ..++
T Consensus       163 ~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~l  242 (371)
T PF14664_consen  163 ISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGL  242 (371)
T ss_pred             HHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHH
Confidence            88889999999999999998776533344444333221       11  12223333443333322222222222 2578


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          613 EHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ..|+..+...++++|+....++--+
T Consensus       243 ksLv~~L~~p~~~ir~~Ildll~dl  267 (371)
T PF14664_consen  243 KSLVDSLRLPNPEIRKAILDLLFDL  267 (371)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            8999999999999998888777654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.00091  Score=67.12  Aligned_cols=190  Identities=17%  Similarity=0.160  Sum_probs=135.4

Q ss_pred             HHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhcc
Q 040749          407 PPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS  485 (643)
Q Consensus       407 ~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~  485 (643)
                      ..++.+|.+.++.++..|+..|.+++.. ..+.... ....++.+.++++...+  .+.|+.+|.|+|.....+..+...
T Consensus         6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~   82 (353)
T KOG2973|consen    6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD   82 (353)
T ss_pred             HHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH
Confidence            3578899999999999999999999877 3343333 34567888888877655  678999999999998888888776


Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-------cCChHHHHHHhccCCh--hhHHHHHHHHHHHhC
Q 040749          486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-------AGIVLPLMNLLEERNL--GMVDEALSILLLLAT  556 (643)
Q Consensus       486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-------~G~v~~Lv~lL~~~~~--~~~~~Al~~L~~La~  556 (643)
                       .+..++.++-+.....-...+.+|.||+..+.....+..       .|.+.....+.+.+..  .-...-..+++||++
T Consensus        83 -~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~  161 (353)
T KOG2973|consen   83 -LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANLSQ  161 (353)
T ss_pred             -HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHHhh
Confidence             888888888777666777889999999988776655432       3444444444433211  335667889999999


Q ss_pred             ChhhHHHhhcCCcHH--HHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          557 HPEGRHKIGQLSFIE--TLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       557 ~~~~~~~i~~~g~i~--~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      .+.||..+.....++  .+..+-..++.--|...+++|.|.|....
T Consensus       162 ~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~  207 (353)
T KOG2973|consen  162 FEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAK  207 (353)
T ss_pred             hhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccch
Confidence            999999998876332  22222222333446678888999886543

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.65  E-value=0.0009  Score=71.97  Aligned_cols=231  Identities=19%  Similarity=0.177  Sum_probs=160.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSK---ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~---~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      ....-|...|...+.+++.-+-..+..+..   .+|..-   --...++.++.-+.++++.+|..|+.-+..+..-....
T Consensus       208 ~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~  284 (675)
T KOG0212|consen  208 SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD  284 (675)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc
Confidence            456778889998888888544443333321   233221   11246888999999999999999998888877654444


Q ss_pred             HHHHhcCChHHHHHHhcCCCH-HHHHHHHHH---HHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          439 RLIAQQGAIPAIIEILQSGST-EARENSAAA---LFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~-e~~~~Aa~~---L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      ....-+|.+..++..+.+... .+++.+.-+   |..+...+..+..+--...+..|...+.++..+.+..++..+..|-
T Consensus       285 ~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~  364 (675)
T KOG0212|consen  285 LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLY  364 (675)
T ss_pred             hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            444467778888887766543 244433322   3334333333333322345778888888889999999999999998


Q ss_pred             cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      ...++..-.-...+.+.|++-|.+++..++..++.+++++|.++.....   -.++..|+++......-....+.-++..
T Consensus       365 ~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~---~~fl~sLL~~f~e~~~~l~~Rg~lIIRq  441 (675)
T KOG0212|consen  365 HKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL---RKFLLSLLEMFKEDTKLLEVRGNLIIRQ  441 (675)
T ss_pred             hhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---HHHHHHHHHHHhhhhHHHHhhhhHHHHH
Confidence            8878776666688999999999999999999999999999997755411   1234455555555555667788888899


Q ss_pred             HhcC
Q 040749          595 LGAN  598 (643)
Q Consensus       595 L~~~  598 (643)
                      ||..
T Consensus       442 lC~l  445 (675)
T KOG0212|consen  442 LCLL  445 (675)
T ss_pred             HHHH
Confidence            9864

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.60  E-value=0.0044  Score=68.08  Aligned_cols=257  Identities=15%  Similarity=0.199  Sum_probs=167.9

Q ss_pred             HHHHHHhhccCchhHHHHHhcCCcHHHHHhC----------CCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHH
Q 040749          383 VRKIRLLSKENPENRILIADCGAIPPLVQLL----------PYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAII  451 (643)
Q Consensus       383 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL----------~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv  451 (643)
                      +.+|+.++ .++.+-..+....++..|.++=          ...+..+...|+.+|+|+-.. +..|..+++.|+.+.++
T Consensus         2 L~~LRiLs-Rd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILS-RDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHc-cCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            45666666 3455555555555555555533          345788999999999999875 45688888999999999


Q ss_pred             HHhcCC-----CHHHHHHHHHHHHhcccc-ccchhhhhc-cCChHHHHHHhccC-----------------ChhhHHHHH
Q 040749          452 EILQSG-----STEARENSAAALFSLSML-DENKITIGL-SDGIPPLVDLLQNG-----------------TIRGKKDAV  507 (643)
Q Consensus       452 ~lL~~~-----~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~-~g~i~~Lv~lL~~~-----------------~~~~~~~A~  507 (643)
                      ..|+..     +.+..-....+||-++.. .+.+..+.. .+++..++..|...                 +......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999876     688889999999988754 456666655 57777777765311                 123356788


Q ss_pred             HHHHHhccCCcchHHHHHcCChHHHHHHhcc---------CChhhHHHHHHHHHHHhC-Chhh-------HHH----hhc
Q 040749          508 TALFNLSLNQANKARAIDAGIVLPLMNLLEE---------RNLGMVDEALSILLLLAT-HPEG-------RHK----IGQ  566 (643)
Q Consensus       508 ~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~-~~~~-------~~~----i~~  566 (643)
                      ..+||+..+......--..+.++.++.++..         +.......++.+|.|+-- +.+.       ...    ...
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            9999998655443322234445555555432         223556777788877722 1111       000    122


Q ss_pred             CCcHHHHHHHHhcC----C----hHHHHHHHHHHHHHhcCCHHHHHHHHH----------------CCcHHHHHHHhhcC
Q 040749          567 LSFIETLVEYIREG----T----PKNKECATAVLLELGANNSSFILAALQ----------------YGVYEHLIQLTEGG  622 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~----s----~~~~e~A~~~L~~L~~~~~~~~~~~~~----------------~g~i~~L~~ll~~g  622 (643)
                      ...+..|+.+|...    .    ...-.--+.+|..++..+...+..+..                ...-..|++++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            34577778777631    1    123344566677777766544444332                34577999999999


Q ss_pred             CHHHHHHHHHHHHHHHhh
Q 040749          623 TSRAQRKANALLQLISKS  640 (643)
Q Consensus       623 ~~~~k~~A~~lL~~L~~~  640 (643)
                      .+.+|..+..+|..||+.
T Consensus       321 ~~~~k~~vaellf~Lc~~  338 (446)
T PF10165_consen  321 DPQLKDAVAELLFVLCKE  338 (446)
T ss_pred             CchHHHHHHHHHHHHHhh
Confidence            999999999999999864

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.55  E-value=9.8e-05  Score=72.55  Aligned_cols=72  Identities=19%  Similarity=0.346  Sum_probs=59.0

Q ss_pred             CCCCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcc-cccCCCCccHHHHHHHHHHHHhc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQT-LAHLSIAPNYALKNLILQWCEKN  341 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~-l~~~~l~pn~~l~~~i~~~~~~~  341 (643)
                      ..+++  +.||.|..++++|+-+ .|||+||..||+.-+-...+.||.|... +--..+.|++..+.-|+.+...+
T Consensus       270 ~~~i~--LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkkq  343 (427)
T COG5222         270 PPNIS--LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKKQ  343 (427)
T ss_pred             CCCcc--ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHHH
Confidence            34444  9999999999999988 6999999999999888777899999653 44556899988888888876643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.01  Score=68.08  Aligned_cols=257  Identities=19%  Similarity=0.252  Sum_probs=171.9

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          363 EIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       363 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..+.+...|. ..++.+|.-|+..+..+. .+.+.-.-++..|.+..|+.+|.+ -+..++.++.+|..|+.+.+.-..-
T Consensus      1772 ~F~l~~~~lr~~~~~~iq~LaL~Vi~~~T-an~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1772 NFPLLITYLRCRKHPKLQILALQVILLAT-ANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred             ccHHHHHHHHHcCCchHHHHHHHHHHHHh-cccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhcCcHHHHHH
Confidence            3455556665 357788988998888776 567788888999999999999876 5778999999999999988775555


Q ss_pred             HhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccc--cchhhhhc------------cCChHHHHHHhccC--Chh---
Q 040749          442 AQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLD--ENKITIGL------------SDGIPPLVDLLQNG--TIR---  501 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~------------~g~i~~Lv~lL~~~--~~~---  501 (643)
                      ++.|++.-|..++-. .++..|..||..|..|..+.  ..|..|.-            .+.-.+.|.++...  +++   
T Consensus      1850 ~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiW 1929 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIW 1929 (2235)
T ss_pred             HhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCccccc
Confidence            688888888887754 46788888888888886542  12222110            01113333333221  110   


Q ss_pred             ---hHHHH------------------------------------------------------------------------
Q 040749          502 ---GKKDA------------------------------------------------------------------------  506 (643)
Q Consensus       502 ---~~~~A------------------------------------------------------------------------  506 (643)
                         .+...                                                                        
T Consensus      1930 n~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~l 2009 (2235)
T KOG1789|consen 1930 NEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVL 2009 (2235)
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHH
Confidence               00000                                                                        


Q ss_pred             ----------------HHHHHHhccCCcc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc
Q 040749          507 ----------------VTALFNLSLNQAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF  569 (643)
Q Consensus       507 ----------------~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~  569 (643)
                                      ..|+..|...+++ ..++-..|.+|.++..+...+..+-..|+.+|..|+.+.-+..++....+
T Consensus      2010 elm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l~~ 2089 (2235)
T KOG1789|consen 2010 ELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQLPC 2089 (2235)
T ss_pred             HHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcccc
Confidence                            0011111111111 22223367777777776655555567799999999999999999999888


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhhcC
Q 040749          570 IETLVEYIREGTPKNKECATAVLLELGANN-SSFILAALQYGVYEHLIQLTEGG  622 (643)
Q Consensus       570 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g  622 (643)
                      +..++..|.. .+...-.|+.+|-.+...+ .+.+...+..|.++.|+.++...
T Consensus      2090 i~~~m~~mkK-~~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2090 IDGIMKSMKK-QPSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             chhhHHHHHh-cchHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccc
Confidence            8888888864 2344447888888776544 45667788899999999999643

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.54  E-value=0.0005  Score=68.52  Aligned_cols=181  Identities=14%  Similarity=0.096  Sum_probs=116.1

Q ss_pred             cCCCHHHHHHHHHHHHhccccc---cchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCCh
Q 040749          455 QSGSTEARENSAAALFSLSMLD---ENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIV  529 (643)
Q Consensus       455 ~~~~~e~~~~Aa~~L~~Ls~~~---~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v  529 (643)
                      .+.+++.+..|...|..+....   +....+..  ...+..++..+.+....+.+.|+.++..|+..-.+.-.-.-..++
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            4567999999999998887544   23333332  255567777777767778899999999988654443332334578


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc-HHHHHHHHhcCChHHHHHHHHHHHHHhcCCH---HHHHH
Q 040749          530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF-IETLVEYIREGTPKNKECATAVLLELGANNS---SFILA  605 (643)
Q Consensus       530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~---~~~~~  605 (643)
                      |.|++.+.++...+.+.|..+|..++.+-..-     ..+ ++.+...+.+.++..|..++..|..+....+   .....
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~  171 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQK  171 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcc
Confidence            89999998888889999999999998754311     123 4556667778899999999999988876554   11111


Q ss_pred             -HHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          606 -ALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       606 -~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                       ..-..+++.+...+.++++.+|+.|..++..+.++
T Consensus       172 ~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  172 SAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence             11134788888999999999999999999988754

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.53  E-value=9.3e-05  Score=52.26  Aligned_cols=40  Identities=35%  Similarity=0.551  Sum_probs=37.3

Q ss_pred             CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749          434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS  473 (643)
Q Consensus       434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls  473 (643)
                      +++++..+++.|+++.|+.+|++++.+++++|+++|.||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            3578889999999999999999999999999999999986

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.52  E-value=5.9e-05  Score=80.96  Aligned_cols=67  Identities=30%  Similarity=0.604  Sum_probs=55.9

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc-cHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP-NYALKNLILQW  337 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p-n~~l~~~i~~~  337 (643)
                      .+.+++.||+|..++.||+.. .|||.||+.|+..|... +..||.|+..+......| ....+..+..|
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            367789999999999999995 99999999999999998 678999988888776665 34555666554

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=7.2e-05  Score=79.21  Aligned_cols=71  Identities=28%  Similarity=0.474  Sum_probs=57.1

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC-----CCccHHHHHHHHHHHHh
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS-----IAPNYALKNLILQWCEK  340 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~-----l~pn~~l~~~i~~~~~~  340 (643)
                      ..++.+|.|-||...+.+||++||||+||..||.+-++. ...||.|+..+....     ..+|+.+..+|..|+..
T Consensus        79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            456889999999999999999999999999999997774 446999998887521     22466677777777654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0096  Score=60.28  Aligned_cols=278  Identities=13%  Similarity=0.126  Sum_probs=180.2

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHH--HhCCCCChHHHHHHHHHHHHhcC-Ccc
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV--QLLPYPDSKILEHAVTAVLNLSI-DES  436 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv--~lL~~~d~~~~~~a~~~L~nLs~-~~~  436 (643)
                      +.+..+.++..+-..+.++-..|.+.|..++ .-+..-..|.+......+-  ++-...+.-++...+..+..++. ++.
T Consensus       126 NaeilklildcIggeddeVAkAAiesikria-lfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpe  204 (524)
T KOG4413|consen  126 NAEILKLILDCIGGEDDEVAKAAIESIKRIA-LFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPE  204 (524)
T ss_pred             hhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH-hcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHH
Confidence            4567788888888889999999999999998 4566666666665555442  22223344456666666666654 555


Q ss_pred             hHHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHH----HH
Q 040749          437 NKRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAV----TA  509 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~----~a  509 (643)
                      .-...-..|.+..|..-|+. .+.-++.++......|...+..+..+...|.|..+.+++...  ++-.+..++    +.
T Consensus       205 saneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf  284 (524)
T KOG4413|consen  205 SANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF  284 (524)
T ss_pred             HHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH
Confidence            56666678988888888875 456678899999999999988988888899999999988543  222222222    22


Q ss_pred             HHHhccCCcchHHHHHc--CChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc--HHHHH-HHHhcCChHH
Q 040749          510 LFNLSLNQANKARAIDA--GIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF--IETLV-EYIREGTPKN  584 (643)
Q Consensus       510 L~nLs~~~~n~~~lv~~--G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~--i~~Lv-~lL~~~s~~~  584 (643)
                      +.+....+-.-..++++  -+|....+++...+++.++.|+.++..|.++-+|+..+...|-  ...++ ...+.....-
T Consensus       285 fgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak  364 (524)
T KOG4413|consen  285 FGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK  364 (524)
T ss_pred             hcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch
Confidence            33333333222222221  2344456667678999999999999999999999999988764  33333 3333333344


Q ss_pred             HHHHHHHHHHHhcC---CHHHH---------H-HHH----H---CCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          585 KECATAVLLELGAN---NSSFI---------L-AAL----Q---YGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       585 ~e~A~~~L~~L~~~---~~~~~---------~-~~~----~---~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ++.++.+|.+++..   .++..         . .+.    +   ..-...+..+++...++++-.|.+.+..+.
T Consensus       365 qeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAia  438 (524)
T KOG4413|consen  365 QEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIA  438 (524)
T ss_pred             HHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHH
Confidence            66677777777642   11111         0 111    1   133455566777778888877777776654

>TIGR02270 conserved hypothetical protein

Probab=97.47  E-value=0.013  Score=63.24  Aligned_cols=152  Identities=19%  Similarity=0.078  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          362 EEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ..++.++..|. ..+.++...++..+...  .++.         ++..|+..|...++.++..++.+|..+         
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~--~~~~---------~~~~L~~~L~d~~~~vr~aaa~ALg~i---------  113 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQ--EDAL---------DLRSVLAVLQAGPEGLCAGIQAALGWL---------  113 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhcc--CChH---------HHHHHHHHhcCCCHHHHHHHHHHHhcC---------
Confidence            45777777774 44555555444443321  2211         377888888888888888888887643         


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                       ...++.+.|+.+|++.++.++..++.++..-           .....+.+..+|++.++.++..|+.+|..|-      
T Consensus       114 -~~~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~------  175 (410)
T TIGR02270       114 -GGRQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP------  175 (410)
T ss_pred             -CchHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc------
Confidence             2456677888888888888877766665541           1234577888888888888888888887664      


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA  555 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La  555 (643)
                          ....++.|...+.+.++.++..|+..+..+.
T Consensus       176 ----~~~a~~~L~~al~d~~~~VR~aA~~al~~lG  206 (410)
T TIGR02270       176 ----RRLSESTLRLYLRDSDPEVRFAALEAGLLAG  206 (410)
T ss_pred             ----cccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence                2345666777787888888888888886553

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.029  Score=59.12  Aligned_cols=238  Identities=20%  Similarity=0.196  Sum_probs=170.4

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc---------hhHHHHHhcCCcHHHHHhCCCCCh------HHHHHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP---------ENRILIADCGAIPPLVQLLPYPDS------KILEHA  424 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~~~d~------~~~~~a  424 (643)
                      +-++++.|+++|...+.++....+.-+..|...+.         ..-..+++.++++.|++-+..-|.      .-..++
T Consensus       123 eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~  202 (536)
T KOG2734|consen  123 ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNT  202 (536)
T ss_pred             HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHH
Confidence            34678999999999999999999999998884332         123456677899999887764333      345677


Q ss_pred             HHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCC--CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhc----
Q 040749          425 VTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSG--STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQ----  496 (643)
Q Consensus       425 ~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~--~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~----  496 (643)
                      +..+-|+.. .+.....+++.|.+..|+.-+...  -..-+.+|..+|.-+..+. +++...+.-.+|..+++-+.    
T Consensus       203 L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~  282 (536)
T KOG2734|consen  203 LAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKR  282 (536)
T ss_pred             HHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhc
Confidence            888889887 455677778888888888866543  2445778888888776554 58888888888888887663    


Q ss_pred             cC-----ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh---HHHhhcCC
Q 040749          497 NG-----TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG---RHKIGQLS  568 (643)
Q Consensus       497 ~~-----~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~---~~~i~~~g  568 (643)
                      ++     ..+...+--.+|+.+...+.|+.+++...+++...-+++. .......++.+|-....++++   ...+++..
T Consensus       283 ~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~l  361 (536)
T KOG2734|consen  283 HDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEIL  361 (536)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            22     1244556666777777899999999998888877766765 445566789999888776654   55667777


Q ss_pred             cHHHHHHHHh---------cCC-hHHHHHHHHHHHHHhcC
Q 040749          569 FIETLVEYIR---------EGT-PKNKECATAVLLELGAN  598 (643)
Q Consensus       569 ~i~~Lv~lL~---------~~s-~~~~e~A~~~L~~L~~~  598 (643)
                      ++..+..+..         ..+ ...-++..++|+++-.+
T Consensus       362 GLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  362 GLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             hHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            7777766543         122 33467788888877654

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.44  E-value=0.00021  Score=74.11  Aligned_cols=51  Identities=24%  Similarity=0.511  Sum_probs=45.9

Q ss_pred             cccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          275 FLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       275 f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      +.|.|++++-++||+-+ +||.|+|+-|++++.+.. +||.++++++..+++|
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e~G-~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAETG-KDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHHcC-CCCCCCCcCCHHHeee
Confidence            46999999999999976 999999999999999854 7999999999877766

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.43  E-value=0.0008  Score=67.02  Aligned_cols=181  Identities=18%  Similarity=0.139  Sum_probs=116.3

Q ss_pred             hcCCCHHHHHHHHHHHHHhhccC--chhHHHHHh--cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HHHHHhcC
Q 040749          371 LSSSKLEVQKEAVRKIRLLSKEN--PENRILIAD--CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KRLIAQQG  445 (643)
Q Consensus       371 L~s~~~~~~~~A~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~i~~~g  445 (643)
                      -.+.+|+.+.+|+..|+.+.+.+  ......+.+  ...+..++..+.+....+...|+.++..++..-.. -..+ -..
T Consensus        16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~   94 (228)
T PF12348_consen   16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADI   94 (228)
T ss_dssp             HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHH
T ss_pred             CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHH
Confidence            35789999999999999999877  333344333  25677888888877888999999999999864322 2222 345


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC-hHHHHHHhccCChhhHHHHHHHHHHhccCCc-chHHH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-NKARA  523 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~-i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~l  523 (643)
                      .+|.|++.+.++...+++.|..+|..+...-...     ... ++.+...+.+.++.++..++..|..+..... +...+
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            7899999999888889999999998886543211     122 4666667788899999999999988765433 11111


Q ss_pred             HH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          524 ID----AGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       524 v~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      -.    ..+++.+...+.+.++++++.|-.+++.+...
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            11    34678888999999999999999999998663

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.42  E-value=0.00045  Score=57.48  Aligned_cols=86  Identities=37%  Similarity=0.506  Sum_probs=70.3

Q ss_pred             cHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc
Q 040749          406 IPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL  484 (643)
Q Consensus       406 i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~  484 (643)
                      ||.|++.| +++++.++..++.+|+++-          ...+++.|+.+++++++.++..|+.+|..+          +.
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~~   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI----------GD   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----------HH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----------CC
Confidence            58899988 8889999999999998543          234689999999999999999999999987          34


Q ss_pred             cCChHHHHHHhccCC-hhhHHHHHHHHH
Q 040749          485 SDGIPPLVDLLQNGT-IRGKKDAVTALF  511 (643)
Q Consensus       485 ~g~i~~Lv~lL~~~~-~~~~~~A~~aL~  511 (643)
                      ..+++.|..++.+++ ..++..|+.+|.
T Consensus        61 ~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            668999999998764 455788887763

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0061  Score=66.95  Aligned_cols=267  Identities=13%  Similarity=0.068  Sum_probs=172.4

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      +..++.+++..+++++.+|..|+.++-...-..+  ...+.. ..+++.|..+-..+++++|.+.+.+|.-|-.....|-
T Consensus       173 ~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~--qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl  250 (885)
T KOG2023|consen  173 NIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT--QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKL  250 (885)
T ss_pred             HHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc--HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc
Confidence            3679999999999999999999998887663322  222222 2366777777777899999999999888764322221


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCC------------------
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGT------------------  499 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~------------------  499 (643)
                      .=--.+++.-++..-+..+.++...|+.....++..+..+..+..  ...||.|+.-+.-.+                  
T Consensus       251 ~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDr  330 (885)
T KOG2023|consen  251 VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDR  330 (885)
T ss_pred             ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCch
Confidence            111245566666666777888888999999999988876666654  466777765332110                  


Q ss_pred             --------------------------------------hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh----c
Q 040749          500 --------------------------------------IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL----E  537 (643)
Q Consensus       500 --------------------------------------~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL----~  537 (643)
                                                            ...++.++.+|--|+.       +....+++.++.+|    .
T Consensus       331 eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan-------vf~~elL~~l~PlLk~~L~  403 (885)
T KOG2023|consen  331 EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN-------VFGDELLPILLPLLKEHLS  403 (885)
T ss_pred             hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHH-------hhHHHHHHHHHHHHHHHcC
Confidence                                                  1123333333333321       12233445555554    4


Q ss_pred             cCChhhHHHHHHHHHHHhCChhhHHHhhcC--CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH-HHHHHHCCcHHH
Q 040749          538 ERNLGMVDEALSILLLLATHPEGRHKIGQL--SFIETLVEYIREGTPKNKECATAVLLELGANNSSF-ILAALQYGVYEH  614 (643)
Q Consensus       538 ~~~~~~~~~Al~~L~~La~~~~~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~-~~~~~~~g~i~~  614 (643)
                      +.+..+++.++-+|..+|..  +-+-+...  ..+|.++.+|.+..|-+|.-++|.|...+..--.. ..... ..++..
T Consensus       404 ~~~W~vrEagvLAlGAIAEG--cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f-~pvL~~  480 (885)
T KOG2023|consen  404 SEEWKVREAGVLALGAIAEG--CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF-KPVLEG  480 (885)
T ss_pred             cchhhhhhhhHHHHHHHHHH--HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh-HHHHHH
Confidence            46777888888888888751  12223332  36888999999999999999999998765431100 11110 124555


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          615 LIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       615 L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      |..-+.+++.++|+.|......+.+
T Consensus       481 ll~~llD~NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  481 LLRRLLDSNKKVQEAACSAFATLEE  505 (885)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHH
Confidence            6666678999999999998877654

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.39  E-value=0.0048  Score=66.59  Aligned_cols=236  Identities=17%  Similarity=0.139  Sum_probs=163.3

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI  482 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i  482 (643)
                      +.||.|-.-+...++.++...+.-|.-|-.-++ .+.+. -...++.|..+|...+.+++..+-.+|.++-..=.++...
T Consensus       167 ~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s  245 (675)
T KOG0212|consen  167 EFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS  245 (675)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc
Confidence            355555555555678888877776665543332 22232 3456778888999999999987777776654222222222


Q ss_pred             hc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCCh-hhHHHHH---HHHHHHhCC
Q 040749          483 GL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNL-GMVDEAL---SILLLLATH  557 (643)
Q Consensus       483 ~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~-~~~~~Al---~~L~~La~~  557 (643)
                      .+ ...++.++.-+.+..+..+..|+..|.....-+++..-.--+|++..++..+.+.++ .+.+.+.   ..|..+++.
T Consensus       246 ~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~  325 (675)
T KOG0212|consen  246 MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSS  325 (675)
T ss_pred             cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhh
Confidence            23 567899999999999999999999999887766665555567888888888877554 3444433   235556666


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      +...+.+.-...+..+.+.+.+....+|-.++.-+..|-..-|.. .......+.+.|+.-+.+.++.+-..+..+|..+
T Consensus       326 ~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i  404 (675)
T KOG0212|consen  326 ERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI  404 (675)
T ss_pred             hhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence            666555332346788888888888889999998888887655432 2233467888999989889999999999999988


Q ss_pred             Hhhc
Q 040749          638 SKSE  641 (643)
Q Consensus       638 ~~~~  641 (643)
                      +..+
T Consensus       405 ~~s~  408 (675)
T KOG0212|consen  405 CSSS  408 (675)
T ss_pred             hcCc
Confidence            7643

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.34  E-value=0.0084  Score=65.85  Aligned_cols=230  Identities=20%  Similarity=0.255  Sum_probs=153.0

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-----ChHHHHHHHHHHHHhcC-CcchHHHHH-hcC
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-----DSKILEHAVTAVLNLSI-DESNKRLIA-QQG  445 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-----d~~~~~~a~~~L~nLs~-~~~~k~~i~-~~g  445 (643)
                      +.++++..+|+++|.|....++..|..+.+.|..+.++..|+..     +.++.-...+.|.-++. ....+..++ +.+
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999876     67777777777766665 445565555 568


Q ss_pred             ChHHHHHHhcC-----------------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC---------C
Q 040749          446 AIPAIIEILQS-----------------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG---------T  499 (643)
Q Consensus       446 ~i~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~---------~  499 (643)
                      ++..|+..|..                 .+.++...+..++||+.........--....++.++.++..-         .
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l  202 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPL  202 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcc
Confidence            88888876631                 134556678899999975533322211245566666654321         2


Q ss_pred             hhhHHHHHHHHHHhccCCcc--------hHH----HHHcCChHHHHHHhcc-----CC---hhhHHHHHHHHHHHhCC-h
Q 040749          500 IRGKKDAVTALFNLSLNQAN--------KAR----AIDAGIVLPLMNLLEE-----RN---LGMVDEALSILLLLATH-P  558 (643)
Q Consensus       500 ~~~~~~A~~aL~nLs~~~~n--------~~~----lv~~G~v~~Lv~lL~~-----~~---~~~~~~Al~~L~~La~~-~  558 (643)
                      .....+++.+|.|+-.....        ...    -....++..|+.+|..     ..   .....-.+.+|.+++.. .
T Consensus       203 ~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~  282 (446)
T PF10165_consen  203 DPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAR  282 (446)
T ss_pred             hhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcH
Confidence            35567788888877311000        000    1123356667777754     11   13445566777777764 3


Q ss_pred             hhHHHhhc----------------CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749          559 EGRHKIGQ----------------LSFIETLVEYIREGTPKNKECATAVLLELGANNSSF  602 (643)
Q Consensus       559 ~~~~~i~~----------------~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~  602 (643)
                      ..|..+..                ...-..|++++.+..+..+..+...|+.||..+...
T Consensus       283 ~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~~~  342 (446)
T PF10165_consen  283 EVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDASR  342 (446)
T ss_pred             HHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhHHH
Confidence            44444321                234577899998877899999999999999876543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.002  Score=69.03  Aligned_cols=258  Identities=16%  Similarity=0.168  Sum_probs=173.3

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHhcCCCH
Q 040749          381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGST  459 (643)
Q Consensus       381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~~~  459 (643)
                      .++..|..+++.-...|.-+.++..+++|+++|+.++..+.--+...++|+... +.-+..+.+.|.|..|+.++.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            445566666655556677777888999999999998777777778888898774 4447888899999999999998888


Q ss_pred             HHHHHHHHHHHhccccccch--hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-cc---hHHHHHcC----Ch
Q 040749          460 EARENSAAALFSLSMLDENK--ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-AN---KARAIDAG----IV  529 (643)
Q Consensus       460 e~~~~Aa~~L~~Ls~~~~~k--~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n---~~~lv~~G----~v  529 (643)
                      ..+.+..|+|..+-.+.++-  -.....-++..++++..+....++...+..|.|+..+. .|   +.-.++.-    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            89999999999998765543  34456677899999999999999999999999997532 22   21122221    23


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHh-hc-CCcHHHHHHHHhc---------CC-----------------
Q 040749          530 LPLMNLLEERNLGMVDEALSILLLLATHPEGRHKI-GQ-LSFIETLVEYIRE---------GT-----------------  581 (643)
Q Consensus       530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~-~g~i~~Lv~lL~~---------~s-----------------  581 (643)
                      ..|++.+...++-.....+.+|.+++...+....+ .+ ...+..+.++|..         |+                 
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~l~  647 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVNLS  647 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeeccc
Confidence            34555555566666666788887777655443333 22 2344444443310         00                 


Q ss_pred             ---------------------------hHHHHHHHHHHHHHh---cC------CHHHHHHHHHCCcHHHHHHHhhcCCHH
Q 040749          582 ---------------------------PKNKECATAVLLELG---AN------NSSFILAALQYGVYEHLIQLTEGGTSR  625 (643)
Q Consensus       582 ---------------------------~~~~e~A~~~L~~L~---~~------~~~~~~~~~~~g~i~~L~~ll~~g~~~  625 (643)
                                                 .+.-....|+..++.   .+      ..+.++.+.+.|.-..|..+..+.++.
T Consensus       648 e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~~Sl~  727 (743)
T COG5369         648 ENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAKDSLI  727 (743)
T ss_pred             ccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhccCcHH
Confidence                                       001111222222221   01      113455556788888888888888999


Q ss_pred             HHHHHHHHHHHHH
Q 040749          626 AQRKANALLQLIS  638 (643)
Q Consensus       626 ~k~~A~~lL~~L~  638 (643)
                      +++++..+|.+++
T Consensus       728 vrek~~taL~~l~  740 (743)
T COG5369         728 VREKIGTALENLR  740 (743)
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999999875

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.30  E-value=9.7e-05  Score=68.41  Aligned_cols=48  Identities=23%  Similarity=0.439  Sum_probs=41.7

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +||  |.|-||.+.++.||++.|||.||..|..+-++.+ .+|-.|+....
T Consensus       194 ~IP--F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg-~~C~~Cgk~t~  241 (259)
T COG5152         194 KIP--FLCGICKKDYESPVVTECGHSFCSLCAIRKYQKG-DECGVCGKATY  241 (259)
T ss_pred             CCc--eeehhchhhccchhhhhcchhHHHHHHHHHhccC-Ccceecchhhc
Confidence            454  9999999999999999999999999988888876 47999987544

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.30  E-value=0.02  Score=60.62  Aligned_cols=158  Identities=27%  Similarity=0.348  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      ....++.+...|.+.++.++..|+..|..+-  +         ...++.|+.+|. +++..++..+..+|+.+-      
T Consensus        72 ~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--~---------~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~------  134 (335)
T COG1413          72 SEEAVPLLRELLSDEDPRVRDAAADALGELG--D---------PEAVPPLVELLENDENEGVRAAAARALGKLG------  134 (335)
T ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--C---------hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcC------
Confidence            3578999999999999999999999777664  2         227899999999 589999999999998765      


Q ss_pred             HHHHhcCChHHHHHHhcCCCH------------HHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHH
Q 040749          439 RLIAQQGAIPAIIEILQSGST------------EARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDA  506 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~------------e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A  506 (643)
                          ...++.+++..+.....            ..+..++..|..+          +....++.+..++.+....++..|
T Consensus       135 ----~~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~~~~vr~~A  200 (335)
T COG1413         135 ----DERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGEL----------GDPEAIPLLIELLEDEDADVRRAA  200 (335)
T ss_pred             ----chhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHc----------CChhhhHHHHHHHhCchHHHHHHH
Confidence                34457788888876542            2333344443333          456788999999999988999999


Q ss_pred             HHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          507 VTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       507 ~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                      +.+|..+....        ..+.+.+...+.+.+..++..++..|..+-.
T Consensus       201 a~aL~~~~~~~--------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         201 ASALGQLGSEN--------VEAADLLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHhhcch--------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            99999887654        3455677888888888888888777776543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.30  E-value=0.00066  Score=56.43  Aligned_cols=86  Identities=35%  Similarity=0.478  Sum_probs=70.2

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          364 IVSLVEQL-SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       364 i~~Lv~~L-~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      |+.|++.| ++.++.++..|++.|..+..  +         .++|.|+.+++++++.++..|+.+|..+.          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57899999 78899999999999995531  1         35899999999999999999999998873          


Q ss_pred             hcCChHHHHHHhcCCC-HHHHHHHHHHHH
Q 040749          443 QQGAIPAIIEILQSGS-TEARENSAAALF  470 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~  470 (643)
                      ...+++.|.+++.+++ ..++..|+.+|.
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            4558999999998764 566888888763

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.29  E-value=0.0032  Score=66.26  Aligned_cols=213  Identities=16%  Similarity=0.143  Sum_probs=142.4

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHH
Q 040749          374 SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE--SNKRLIAQQGAIPAII  451 (643)
Q Consensus       374 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~--~~k~~i~~~g~i~~Lv  451 (643)
                      ..++.++..+..|.++.|++.+....+++.|++..++--.+..++.+..+++-+|.|++.+.  ..+..|++..+-+.|.
T Consensus       234 e~~e~aR~~~~il~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF  313 (832)
T KOG3678|consen  234 EPVELARSVAGILEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLF  313 (832)
T ss_pred             CcHHHHHHHHHHHHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhh
Confidence            46788899999999999999999999999999999999889999999999999999998854  5688888888777777


Q ss_pred             HHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChh-hHHHHHHHHHHhccCCcchHHHHHcCChH
Q 040749          452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIR-GKKDAVTALFNLSLNQANKARAIDAGIVL  530 (643)
Q Consensus       452 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~-~~~~A~~aL~nLs~~~~n~~~lv~~G~v~  530 (643)
                      -+-.+.+.-++.+|+-+++-|+.+.+.-..+..+|.+..+-.++.+-++. ...++-       .+...+    ...-++
T Consensus       314 ~LA~skDel~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~h-------d~aQG~----~~d~Lq  382 (832)
T KOG3678|consen  314 PLAFSKDELLRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAH-------DYAQGR----GPDDLQ  382 (832)
T ss_pred             hhhcchHHHHHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhh-------hhhccC----ChHHHH
Confidence            77767778889999999999988777655565666654444444443331 111111       111111    012355


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhC--ChhhHHHhh-cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          531 PLMNLLEERNLGMVDEALSILLLLAT--HPEGRHKIG-QLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       531 ~Lv~lL~~~~~~~~~~Al~~L~~La~--~~~~~~~i~-~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      .|+.+|.+...+.+.-+..-|+.=+.  ...++..+. +-|+|..|-++..+.+...-..|-.+|.-+..
T Consensus       383 RLvPlLdS~R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  383 RLVPLLDSNRLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE  452 (832)
T ss_pred             HhhhhhhcchhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence            67777775433333222222211111  233444443 45888888888876554445556666665554

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.00011  Score=72.94  Aligned_cols=48  Identities=17%  Similarity=0.238  Sum_probs=44.3

Q ss_pred             ccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       276 ~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      .|+||...+..||.++|+|.||.-||+.-+..+..+||+|+.++++.-
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            499999999999999999999999999988877889999999999753

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.28  E-value=0.016  Score=64.27  Aligned_cols=251  Identities=16%  Similarity=0.219  Sum_probs=157.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ..++.|++.|..+|+.+|-.|+..|+.|++.||.|.-.+     -|.+.++|... +.-+....+...++|+--++--  
T Consensus       181 ~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL--  253 (877)
T KOG1059|consen  181 PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL--  253 (877)
T ss_pred             hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCchh--
Confidence            468889999999999999999999999999998876443     47788877643 5556667777778887644321  


Q ss_pred             HHhcCChHHHHHHhcCCC-HHHHHHHHHHHHhccccc---cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          441 IAQQGAIPAIIEILQSGS-TEARENSAAALFSLSMLD---ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~---~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                        ....+++|.+++.+.. +.+...+..++-.-+...   ++-..+  .-++..|-.++.+.++..++.++.|+..+...
T Consensus       254 --gKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~kt  329 (877)
T KOG1059|consen  254 --GKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKT  329 (877)
T ss_pred             --hhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhh
Confidence              1235789999998764 344444444443332211   111111  23566666777888999999999999988754


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHHHHH
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVLLEL  595 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L~~L  595 (643)
                      +..   .|.+ --..+++.|.+.++.++-.|+..|..+.+.. +-.+     .+..|+..+...+ ...|..-+.-+..+
T Consensus       330 Hp~---~Vqa-~kdlIlrcL~DkD~SIRlrALdLl~gmVskk-Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~i  399 (877)
T KOG1059|consen  330 HPK---AVQA-HKDLILRCLDDKDESIRLRALDLLYGMVSKK-NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISI  399 (877)
T ss_pred             CHH---HHHH-hHHHHHHHhccCCchhHHHHHHHHHHHhhhh-hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            332   1211 1245678888999999999999999887643 2222     3455665554433 35666666666777


Q ss_pred             hcCCHHHHHHHHHCC-cHHHHHHHhh-cCCHHHHHHHHHHHH
Q 040749          596 GANNSSFILAALQYG-VYEHLIQLTE-GGTSRAQRKANALLQ  635 (643)
Q Consensus       596 ~~~~~~~~~~~~~~g-~i~~L~~ll~-~g~~~~k~~A~~lL~  635 (643)
                      |+.+.  ...+.+-. .+..|+++.. .|+.++..-|..++-
T Consensus       400 CS~sn--Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~D  439 (877)
T KOG1059|consen  400 CSQSN--YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIID  439 (877)
T ss_pred             hhhhh--hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHH
Confidence            77643  12221211 2444445443 345555444444443

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.00017  Score=74.46  Aligned_cols=47  Identities=19%  Similarity=0.477  Sum_probs=40.4

Q ss_pred             cccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          275 FLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       275 f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      +.|-||+|-+.+-   +++||+|.|...||..|+.....+||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            7999999999843   4689999999999999999876679999886553

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.26  E-value=0.015  Score=63.84  Aligned_cols=267  Identities=14%  Similarity=0.107  Sum_probs=173.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHH-HHHHHHHHHhcCCcchHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL-EHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~-~~a~~~L~nLs~~~~~k~  439 (643)
                      ....+.+.+.+.+.....+..|.+.+..+.+++  .-..+.+.+.+..|-........... +.+.-+.-....+   -.
T Consensus       133 ~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~---Lg  207 (569)
T KOG1242|consen  133 EYVLELLLELLTSTKIAERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGN---LG  207 (569)
T ss_pred             HHHHHHHHHHhccccHHHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHh---cC
Confidence            356777888888888899999999999998544  34455667788888887776543332 2222221111110   00


Q ss_pred             HHHhcCChHHHHHHhc---CCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          440 LIAQQGAIPAIIEILQ---SGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~---~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      ...+.+.++.+-.+|.   +...++|..|..+...+- ..+.+.    -...+|.++.-+....++.+..++..|..+..
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VKLLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            1224555565555554   334666665555544332 111111    12345666655555588999999999999998


Q ss_pred             CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC---ChhhHHH--------------------------h--
Q 040749          516 NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT---HPEGRHK--------------------------I--  564 (643)
Q Consensus       516 ~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~---~~~~~~~--------------------------i--  564 (643)
                      ..+......-..++|.+.+.|.+..+++++.+..+|..+++   +++....                          +  
T Consensus       284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~  363 (569)
T KOG1242|consen  284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVA  363 (569)
T ss_pred             hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeee
Confidence            88888888889999999999999999999999999988875   2221111                          1  


Q ss_pred             -hcCCcHHHHHHHHhc----CChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          565 -GQLSFIETLVEYIRE----GTPKNKECATAVLLELGANN--SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       565 -~~~g~i~~Lv~lL~~----~s~~~~e~A~~~L~~L~~~~--~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                       +++-.+..++.+|++    .+...+..++.+..|+|.--  +......+. -++|-|...+..-.|++|.-|.+.|..+
T Consensus       364 ~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~-~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  364 EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLP-SLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHH-HHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence             123344556666654    35667888999999999743  443333322 2566666777767899998888888444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.026  Score=57.26  Aligned_cols=263  Identities=15%  Similarity=0.112  Sum_probs=165.1

Q ss_pred             CHHHHHHHHHHHHHhhccCchhH----HHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHH
Q 040749          375 KLEVQKEAVRKIRLLSKENPENR----ILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAI  450 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~L  450 (643)
                      +..++.-+++.+.-+..+.+.|-    ..++++|..|.++..+..+|.++-..|...+..++..+..-..|.+....+.+
T Consensus        95 dasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdl  174 (524)
T KOG4413|consen   95 DASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDL  174 (524)
T ss_pred             cchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChH
Confidence            44445555555555554333221    23457889999999999999999999999999999998888888877776655


Q ss_pred             HHH--hcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHc
Q 040749          451 IEI--LQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDA  526 (643)
Q Consensus       451 v~l--L~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~  526 (643)
                      -..  -...+.-+|......+-.+++. ++.....-.+|.+..|..=|+. .+.-+....+...+.|......+..+...
T Consensus       175 hlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgreflaQe  254 (524)
T KOG4413|consen  175 HLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQE  254 (524)
T ss_pred             HHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchh
Confidence            432  2223344555555555555433 2332233346777776666654 45566777888888999888888888999


Q ss_pred             CChHHHHHHhccCC--hhhHHHHHHHHHHHhCChh----hHHHhhcC--CcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          527 GIVLPLMNLLEERN--LGMVDEALSILLLLATHPE----GRHKIGQL--SFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       527 G~v~~Lv~lL~~~~--~~~~~~Al~~L~~La~~~~----~~~~i~~~--g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      |+|+.+..++...+  +--.-.++.....+-++..    .-+++.+.  -+|....+++...+|...+.|+.+|..|.++
T Consensus       255 glIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSn  334 (524)
T KOG4413|consen  255 GLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN  334 (524)
T ss_pred             hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC
Confidence            99999999997633  3323334444443333211    12233331  2355566777888999999999999999876


Q ss_pred             CHHHHHHHHHCC--cHHHHHHHhhcCCHHHH-HHHHHHHHHHH
Q 040749          599 NSSFILAALQYG--VYEHLIQLTEGGTSRAQ-RKANALLQLIS  638 (643)
Q Consensus       599 ~~~~~~~~~~~g--~i~~L~~ll~~g~~~~k-~~A~~lL~~L~  638 (643)
                      .. ....+...|  ....++.-..+.+..++ +.|..+|..+.
T Consensus       335 te-GadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  335 TE-GADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             cc-hhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence            53 333444433  34444444444444443 44455555543

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00018  Score=71.28  Aligned_cols=50  Identities=22%  Similarity=0.361  Sum_probs=43.7

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ..+|  |.|-||.+.+.+||++.|||+||..|-.+.++.+. .|+.|++....
T Consensus       238 ~~~P--f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~-~c~vC~~~t~g  287 (313)
T KOG1813|consen  238 ELLP--FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGE-KCYVCSQQTHG  287 (313)
T ss_pred             ccCC--ccccccccccccchhhcCCceeehhhhccccccCC-cceeccccccc
Confidence            3455  88999999999999999999999999999998764 69999887654

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.16  E-value=0.00042  Score=56.36  Aligned_cols=46  Identities=24%  Similarity=0.480  Sum_probs=35.2

Q ss_pred             cccccCcccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCcCcccc
Q 040749          275 FLCPITLEIMRD-PVII-ASGQTFERESVQKWFDS--NHRTCPKTRQTLA  320 (643)
Q Consensus       275 f~CpIc~~~m~d-Pv~~-~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~  320 (643)
                      -.||.|...-.| |++. .|||.|...||.+|++.  +..+||+||++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            446666655544 6554 79999999999999995  4568999998764

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.00023  Score=80.10  Aligned_cols=48  Identities=31%  Similarity=0.693  Sum_probs=42.0

Q ss_pred             CCccccccCcccccC-----ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          272 PHEFLCPITLEIMRD-----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       272 ~~~f~CpIc~~~m~d-----Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      ..+-.|+||.|.|..     |-.++|||.|+..|+.+|++.. .+||.|+..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~-qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ-QTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh-CcCCcchhhhh
Confidence            446789999999998     7889999999999999999984 58999988443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0005  Score=67.41  Aligned_cols=50  Identities=18%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             CCCccccccCcccccCceec-CCCCccchHHHHHHHh-cCCCCCCCcCcccc
Q 040749          271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFD-SNHRTCPKTRQTLA  320 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~-~~~~~cP~~~~~l~  320 (643)
                      -...-.||+|++.-.-|.+. +|||.||..||..-+. ...++||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34567899999999999877 5999999999998776 34579999988655

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.00043  Score=70.32  Aligned_cols=48  Identities=21%  Similarity=0.573  Sum_probs=40.7

Q ss_pred             CCccccccCcccccC-------------ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          272 PHEFLCPITLEIMRD-------------PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       272 ~~~f~CpIc~~~m~d-------------Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      .++-.|-||++-|-.             |--+||||.+.-.|+..|+++. .|||.|+.++.
T Consensus       285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq-QTCPICr~p~i  345 (491)
T COG5243         285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ-QTCPICRRPVI  345 (491)
T ss_pred             CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc-cCCCcccCccc
Confidence            467889999998653             3678999999999999999975 48999999854

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.05  E-value=0.0011  Score=46.44  Aligned_cols=39  Identities=36%  Similarity=0.575  Sum_probs=36.4

Q ss_pred             chhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749          394 PENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS  432 (643)
Q Consensus       394 ~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs  432 (643)
                      ++++..+.+.|++|.|+.+|.+++.+++..++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            458889999999999999999999999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.02  E-value=0.05  Score=55.14  Aligned_cols=222  Identities=18%  Similarity=0.172  Sum_probs=156.1

Q ss_pred             ChHHHHHHHHHHHHhcCCcchHHHHH-hcCChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHH
Q 040749          417 DSKILEHAVTAVLNLSIDESNKRLIA-QQGAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLV  492 (643)
Q Consensus       417 d~~~~~~a~~~L~nLs~~~~~k~~i~-~~g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv  492 (643)
                      ++-++..|+.+|.++....+.|..+. +...-..++..+++  |..+++.+..-++|-|+.++.....|-. ...|.-|+
T Consensus       162 ~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         162 DFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            55577889999999999888877665 55566788888876  4578999999999999988777654444 46778888


Q ss_pred             HHhccC-ChhhHHHHHHHHHHhccCC--cchHHHHHcCChHHHHHHhcc---CChhhHHHHH---HHH----HHHhC---
Q 040749          493 DLLQNG-TIRGKKDAVTALFNLSLNQ--ANKARAIDAGIVLPLMNLLEE---RNLGMVDEAL---SIL----LLLAT---  556 (643)
Q Consensus       493 ~lL~~~-~~~~~~~A~~aL~nLs~~~--~n~~~lv~~G~v~~Lv~lL~~---~~~~~~~~Al---~~L----~~La~---  556 (643)
                      .+.+.. ...+.+.++..+.|++...  .-...+.-.|-+.+.++.|..   .+++++...-   ..|    ..||.   
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            888764 4567788889999998732  234445666666666777654   4444432211   111    11111   


Q ss_pred             ------------Ch---------hhHHHhhcC--CcHHHHHHHHhcCChH-HHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749          557 ------------HP---------EGRHKIGQL--SFIETLVEYIREGTPK-NKECATAVLLELGANNSSFILAALQYGVY  612 (643)
Q Consensus       557 ------------~~---------~~~~~i~~~--g~i~~Lv~lL~~~s~~-~~e~A~~~L~~L~~~~~~~~~~~~~~g~i  612 (643)
                                  +|         .+...+.+.  ..+..|.++++...+. .-.-|+.=+.++.+..|+....+...|+-
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k  401 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK  401 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence                        11         122223332  3578888888877665 34456667778888888888888889999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          613 EHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ..++.++.+.++++|-.|...++.+-
T Consensus       402 ~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         402 EIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             HHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999888664

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.00  E-value=0.022  Score=65.58  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=161.7

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHH-hcCCcchHHHHHhcCChHHHHHHhcC-
Q 040749          379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN-LSIDESNKRLIAQQGAIPAIIEILQS-  456 (643)
Q Consensus       379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~n-Ls~~~~~k~~i~~~g~i~~Lv~lL~~-  456 (643)
                      +.+|+.-|..+..-.+=.-..-..-|..|.++++|.++-.+++.--+-+=.. |+.++..+..+++.++-.-++.+|.. 
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~  566 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPS  566 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCc
Confidence            3345555554443333334444556999999999999877776554444333 56677777778877777777888876 


Q ss_pred             C--CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHH
Q 040749          457 G--STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSL-NQANKARAIDAGIVLP  531 (643)
Q Consensus       457 ~--~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~  531 (643)
                      +  ++|-|.-||-+|..+..+ .-.++.-.+.+.|...+..|.++ .+-.+...+.+|..|-. ++++|..=++.++...
T Consensus       567 ~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ahek  646 (1387)
T KOG1517|consen  567 QAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEK  646 (1387)
T ss_pred             CCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHH
Confidence            3  357888888888888654 23445555678888888888886 57778889999998865 6777777788999999


Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhCC-----hhhHHHh-----------hcCCcH----HHHHHHHhcCChHHHHHHHHH
Q 040749          532 LMNLLEERNLGMVDEALSILLLLATH-----PEGRHKI-----------GQLSFI----ETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       532 Lv~lL~~~~~~~~~~Al~~L~~La~~-----~~~~~~i-----------~~~g~i----~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                      |..+|.++-++++.+|+.+|..+-++     ++....+           .-+..+    ..++.++..+++-++...+-+
T Consensus       647 L~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~  726 (1387)
T KOG1517|consen  647 LILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVA  726 (1387)
T ss_pred             HHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999998763     2332222           012222    367778888999998888888


Q ss_pred             HHHHhcCCHHHHHH
Q 040749          592 LLELGANNSSFILA  605 (643)
Q Consensus       592 L~~L~~~~~~~~~~  605 (643)
                      |..+..+...+...
T Consensus       727 ls~~~~g~~~~~~~  740 (1387)
T KOG1517|consen  727 LSHFVVGYVSHLKV  740 (1387)
T ss_pred             HHHHHHhhHHHhHH
Confidence            88888766544433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.00  E-value=0.024  Score=61.36  Aligned_cols=251  Identities=19%  Similarity=0.107  Sum_probs=131.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH---
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK---  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k---  438 (643)
                      ...|+|-.+|++.-.-++.++++.+..++..+..  ..+. ...|..|-.+|+++....|-.|+++|..|+...+.+   
T Consensus       264 q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~v  340 (898)
T COG5240         264 QLRPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSV  340 (898)
T ss_pred             HHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeee
Confidence            3455566666766677888999999988855411  1111 125667778899999999999999999987632211   


Q ss_pred             -----HHHH-h-cC--ChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhc-------------cCChHHHHHH
Q 040749          439 -----RLIA-Q-QG--AIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGL-------------SDGIPPLVDL  494 (643)
Q Consensus       439 -----~~i~-~-~g--~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~-------------~g~i~~Lv~l  494 (643)
                           +.++ + ..  ..-++..+|+.|+.+....-...+-+.-.+  |..|..+.+             .-.+..|.+.
T Consensus       341 cN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~  420 (898)
T COG5240         341 CNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSS  420 (898)
T ss_pred             cChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHH
Confidence                 1222 1 11  222445556665544433333322222111  111111110             0011112211


Q ss_pred             h-ccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC---ChhhHHHhh-----
Q 040749          495 L-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT---HPEGRHKIG-----  565 (643)
Q Consensus       495 L-~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~---~~~~~~~i~-----  565 (643)
                      | +.|-.+.++.+..||..+..                       ..|+.++.|+..|+..-.   .++....|.     
T Consensus       421 L~~eGg~eFK~~~Vdaisd~~~-----------------------~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~  477 (898)
T COG5240         421 LLQEGGLEFKKYMVDAISDAME-----------------------NDPDSKERALEVLCTFIEDCEYHQITVRILGILGR  477 (898)
T ss_pred             HHhcccchHHHHHHHHHHHHHh-----------------------hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence            1 12222333333333332222                       234445555554444422   222111111     


Q ss_pred             ------c-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          566 ------Q-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       566 ------~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                            . ...+..+..-+--.+.-+|..|+.+|...+-+-...   .....+...|.+.+.+.++.+|..|..+|++++
T Consensus       478 EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~---~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         478 EGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV---VSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             cCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc---ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence                  0 123444444443356678889999998776543211   112345677888999999999999999999998


Q ss_pred             hhc
Q 040749          639 KSE  641 (643)
Q Consensus       639 ~~~  641 (643)
                      ..+
T Consensus       555 ~~d  557 (898)
T COG5240         555 LSD  557 (898)
T ss_pred             hhh
Confidence            654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.042  Score=61.18  Aligned_cols=219  Identities=17%  Similarity=0.236  Sum_probs=155.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k  438 (643)
                      .++....++.+|++.-+-++.+|+..+..+.-..|+.-     .-.+|.|+.-|..+|+.++..|+.+++.|+. ++.|-
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl-----r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkny  216 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL-----RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNY  216 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH-----hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccc
Confidence            45677889999999999999999999988876555532     2357999999999999999999999999997 56665


Q ss_pred             HHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHH--Hhc
Q 040749          439 RLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALF--NLS  514 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~--nLs  514 (643)
                      -.+     -|.+.++|... +-.+.........+|+-.+.   .+| ...+++|.+++.+... ...+.+..++-  |++
T Consensus       217 L~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLg-KKLieplt~li~sT~AmSLlYECvNTVVa~s~s  287 (877)
T KOG1059|consen  217 LQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLG-KKLIEPITELMESTVAMSLLYECVNTVVAVSMS  287 (877)
T ss_pred             ccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhh-hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhc
Confidence            433     35666766533 33344455666667764321   111 2468999999987542 44444444443  455


Q ss_pred             cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749          515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL  593 (643)
Q Consensus       515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  593 (643)
                      ....+....+.. +++.|-.++.+.++.+.-.++-++..++. |+...++     --..+++.|.+.++.+|-.|+..|.
T Consensus       288 ~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~DkD~SIRlrALdLl~  361 (877)
T KOG1059|consen  288 SGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HKDLILRCLDDKDESIRLRALDLLY  361 (877)
T ss_pred             cCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhccCCchhHHHHHHHHH
Confidence            444444444433 57778888888999999989988888876 5543332     2346788899999999999999999


Q ss_pred             HHhcC
Q 040749          594 ELGAN  598 (643)
Q Consensus       594 ~L~~~  598 (643)
                      .+...
T Consensus       362 gmVsk  366 (877)
T KOG1059|consen  362 GMVSK  366 (877)
T ss_pred             HHhhh
Confidence            88754

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.93  E-value=0.018  Score=53.18  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=98.0

Q ss_pred             HHHHHcCChHHHHHHhccCC------hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHH
Q 040749          521 ARAIDAGIVLPLMNLLEERN------LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVL  592 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~------~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L  592 (643)
                      ..++..|++..|++++.++.      .++...++.++..|-.+.-.-=...+..+|..++.++...  ++.+...|+++|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            56888999999999998754      4667788888888887654222355667899999999854  478899999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      -++..+++.....+.++=-++.|+..++..+++++.+|..++..|-
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~  130 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF  130 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999888888888888999999999999999999999998763

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.89  E-value=0.027  Score=61.97  Aligned_cols=224  Identities=16%  Similarity=0.186  Sum_probs=140.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..++.++....+....+|..|..+.+.+...-+..-.    .-.+|.++.-+.........+++..|+.++...+.+-..
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV----K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~  291 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV----KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSL  291 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh----hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHH
Confidence            3455666666666777777666666655422111100    012334433333335677889999999998877776666


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                      .-...+|.+.++|-+..++++..+..+|..++..-+|...   .-.+|.|++-+.+.+...-+ +...|..=..     .
T Consensus       292 ~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V  362 (569)
T KOG1242|consen  292 CLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----V  362 (569)
T ss_pred             HHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----e
Confidence            6788999999999999999999999999999877666552   24567777777665422222 2222221111     1


Q ss_pred             HHHHcCChHHHHHHh----ccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          522 RAIDAGIVLPLMNLL----EERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL----~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      .-|++-.+..++.+|    .+.+..+...++.++.|+|.--+....+..  ...+|.+-..+.+..|++|.-|..+|..+
T Consensus       363 ~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l  442 (569)
T KOG1242|consen  363 AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGAL  442 (569)
T ss_pred             eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHH
Confidence            112333344444444    446777888999999999984433343332  23455555555566799999999999776


Q ss_pred             hcC
Q 040749          596 GAN  598 (643)
Q Consensus       596 ~~~  598 (643)
                      -..
T Consensus       443 ~e~  445 (569)
T KOG1242|consen  443 LER  445 (569)
T ss_pred             HHH
Confidence            543

>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots

Probab=96.84  E-value=0.017  Score=53.15  Aligned_cols=90  Identities=18%  Similarity=0.246  Sum_probs=73.9

Q ss_pred             hhhhhhhHHHHHHHHhhhHHHHHhhhcCCCCChhHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHhhHHHHHHHHHHHH
Q 040749           50 RTQKKECYGLVRRMKLLLPLIDEIRELDTPISETNMAALCNLKKALVVAKKLLKLCNEGSKIYLALDMEIVIIRFHAVCE  129 (643)
Q Consensus        50 ~~~~~~~~~l~~~~~~l~~~~ee~~~~~~~~~~~~~~~l~~L~~~l~~ak~ll~~c~~~sk~~l~~~~~~~~~~~~~~~~  129 (643)
                      ...|..+..|..-++.|.|+++|+...+..++.+-..-++.|...|++++.|++.|++.+ -|=++.......+++++-.
T Consensus        30 ~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-r~n~~kk~~y~~Ki~~le~  108 (147)
T PF05659_consen   30 LSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-RWNLYKKPRYARKIEELEE  108 (147)
T ss_pred             HhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-HHHHHhhHhHHHHHHHHHH
Confidence            344666678889999999999999987665666668889999999999999999999876 4455577778999999999


Q ss_pred             HHHHHhcc-CCC
Q 040749          130 KLSAALDG-LDF  140 (643)
Q Consensus       130 ~l~~~L~~-~p~  140 (643)
                      +|.+.++. +|+
T Consensus       109 ~l~~f~~v~~q~  120 (147)
T PF05659_consen  109 SLRRFIQVDLQL  120 (147)
T ss_pred             HHHHHhcchhHH
Confidence            99988874 554

Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.83  E-value=0.21  Score=49.07  Aligned_cols=178  Identities=13%  Similarity=0.143  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccc--hhhhhccCChHHH
Q 040749          419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDEN--KITIGLSDGIPPL  491 (643)
Q Consensus       419 ~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~L  491 (643)
                      .-..+|+..|--++.+++.|..+..+..---+-.+|..+     ....|-.+..++..|...++-  ...+...++||.+
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            345678888888899999999999876544455555432     367888999999999866543  3345568999999


Q ss_pred             HHHhccCChhhHHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHH
Q 040749          492 VDLLQNGTIRGKKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLL-EERNLGMVDEALSILLLLATHPEGRH  562 (643)
Q Consensus       492 v~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~  562 (643)
                      ++.+..|+...|..|...+..+-.++.+-..+..        .-++..++..+ +.++..+..+++.+..+|+.++..|.
T Consensus       174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~  253 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARA  253 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999988777766443321        22333333333 34888999999999999999998888


Q ss_pred             Hhhc--C-CcHH-HHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          563 KIGQ--L-SFIE-TLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       563 ~i~~--~-g~i~-~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      ++..  . +.-. ....+++ .++..+..-...+.++|.
T Consensus       254 aL~~clPd~Lrd~tfs~~l~-~D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  254 ALRSCLPDQLRDGTFSLLLK-DDPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHHhhCcchhccchHHHHHh-cChhHHHHHHHHHHHhcc
Confidence            7754  1 1111 1222333 455666666666666654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.81  E-value=0.0012  Score=66.44  Aligned_cols=53  Identities=25%  Similarity=0.481  Sum_probs=45.1

Q ss_pred             CCCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ....|+.-.||+|..--.+|.++. +|..||..||-.+.. .+.+||+|+.+..-
T Consensus       294 e~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~-~~~~CPVT~~p~~v  347 (357)
T KOG0826|consen  294 ELLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVV-NYGHCPVTGYPASV  347 (357)
T ss_pred             ccCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHH-hcCCCCccCCcchH
Confidence            345678889999999999998775 799999999999998 46789999887653

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.74  E-value=0.029  Score=61.26  Aligned_cols=221  Identities=17%  Similarity=0.196  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccC------------------------chhHH-------HHH---------
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKEN------------------------PENRI-------LIA---------  401 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~------------------------~~~r~-------~i~---------  401 (643)
                      ..+...+..|++..++++.+|+.....+++--                        ++.--       +|.         
T Consensus       604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            45777888899988888888887766665310                        11000       011         


Q ss_pred             --hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc----hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc
Q 040749          402 --DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES----NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML  475 (643)
Q Consensus       402 --~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~----~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~  475 (643)
                        -.|.+|.|..+|++....++.+.+..++.++....    .|+.+.-   --.|++.|++.+.++|.+|..++..+|. 
T Consensus       684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI---cfeLvd~Lks~nKeiRR~A~~tfG~Is~-  759 (975)
T COG5181         684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI---CFELVDSLKSWNKEIRRNATETFGCISR-  759 (975)
T ss_pred             CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH---HHHHHHHHHHhhHHHHHhhhhhhhhHHh-
Confidence              13788889999999999999999999998887432    2555532   2346788889999999999999988864 


Q ss_pred             ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh
Q 040749          476 DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA  555 (643)
Q Consensus       476 ~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La  555 (643)
                           .||-..++..|++-|+..+...+.....++.-.+.+-.      --.++|.|+.=-..++..++.-.+.+++.+-
T Consensus       760 -----aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg------pfsVlP~lm~dY~TPe~nVQnGvLkam~fmF  828 (975)
T COG5181         760 -----AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG------PFSVLPTLMSDYETPEANVQNGVLKAMCFMF  828 (975)
T ss_pred             -----hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC------chhhHHHHHhcccCchhHHHHhHHHHHHHHH
Confidence                 34444555555555544332222222222221111000      0113344443333355555655555555543


Q ss_pred             CC--hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          556 TH--PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       556 ~~--~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                      ..  ...+.-+  ....|.|-+.|.+.++.-|.-|..++.+|.-+.
T Consensus       829 eyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc  872 (975)
T COG5181         829 EYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNC  872 (975)
T ss_pred             HHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCC
Confidence            31  1112111  123455555666667777777888877776553

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.69  E-value=0.0007  Score=71.68  Aligned_cols=52  Identities=21%  Similarity=0.309  Sum_probs=44.9

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhc----CCCCCCCcCcccccCC
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS----NHRTCPKTRQTLAHLS  323 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~----~~~~cP~~~~~l~~~~  323 (643)
                      ..+-.|.+|.+.-.||+...|.|+|||-||.++...    .+-+||.|..+|+...
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            345789999999999999999999999999888873    4578999999888653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.012  Score=63.13  Aligned_cols=197  Identities=11%  Similarity=0.076  Sum_probs=145.0

Q ss_pred             HHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCCh
Q 040749          423 HAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTI  500 (643)
Q Consensus       423 ~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~  500 (643)
                      .++..|..++.+-. -|.-+....+..+|+++|.+++..+.-.+...++|+-.. ...+..+.+.|.|..|+.++.+.+.
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDd  487 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDD  487 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchh
Confidence            44455556654332 356666788999999999987766666677777777543 3456667789999999999998888


Q ss_pred             hhHHHHHHHHHHhccCCcc--hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC----ChhhHHHhhcCC----cH
Q 040749          501 RGKKDAVTALFNLSLNQAN--KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT----HPEGRHKIGQLS----FI  570 (643)
Q Consensus       501 ~~~~~A~~aL~nLs~~~~n--~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~----~~~~~~~i~~~g----~i  570 (643)
                      ..+....|.|+++..+..+  +-+++..-++..++++..++...++..++.+|.|+.-    +++.+..+.+.-    ..
T Consensus       488 aLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylf  567 (743)
T COG5369         488 ALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLF  567 (743)
T ss_pred             hhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHH
Confidence            8999999999999876544  4567888889999999999999999999999999944    233344443322    34


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHh
Q 040749          571 ETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL-QYGVYEHLIQLT  619 (643)
Q Consensus       571 ~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll  619 (643)
                      ..+++.++..+|-.-+..+.+|.+++..++.....+. +...+..+.+++
T Consensus       568 k~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         568 KRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            5667777788888888889999999887765555544 344555555555

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.0012  Score=65.50  Aligned_cols=47  Identities=21%  Similarity=0.517  Sum_probs=38.5

Q ss_pred             cccccCccccc--Cce-ecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          275 FLCPITLEIMR--DPV-IIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       275 f~CpIc~~~m~--dPv-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      -.|.||++-+.  |-+ ++||.|.|.+.|+.+|+..-...||+|+.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            46999999875  444 569999999999999998544579999987764

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=96.63  E-value=0.0042  Score=43.35  Aligned_cols=39  Identities=33%  Similarity=0.555  Sum_probs=35.7

Q ss_pred             cchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749          435 ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS  473 (643)
Q Consensus       435 ~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls  473 (643)
                      ++++..+.+.|+++.|+.+|.+++.+++..++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            447788889999999999999989999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.081  Score=59.38  Aligned_cols=266  Identities=15%  Similarity=0.149  Sum_probs=168.5

Q ss_pred             HHHHHHHHHhcCCCHH-HHHHHHHHHHHhhccCchhHHHHHhc-CCcHHHHHhCCC--CChHHHHHHHHHHHHhcC----
Q 040749          362 EEIVSLVEQLSSSKLE-VQKEAVRKIRLLSKENPENRILIADC-GAIPPLVQLLPY--PDSKILEHAVTAVLNLSI----  433 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~-~~~~A~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~----  433 (643)
                      +.+..|+.......+. .+..++.+|+.++.+ -+-....... .++-.++.-...  ++..+|-.|+.+|.|--.    
T Consensus       129 ~li~~lv~nv~~~~~~~~k~~slealGyice~-i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~  207 (859)
T KOG1241|consen  129 ELIVTLVSNVGEEQASMVKESSLEALGYICED-IDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA  207 (859)
T ss_pred             HHHHHHHHhcccccchHHHHHHHHHHHHHHcc-CCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            3444455554444443 778899999999843 3333333333 356666765544  367889999999987432    


Q ss_pred             ---CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHH
Q 040749          434 ---DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTA  509 (643)
Q Consensus       434 ---~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a  509 (643)
                         ++..|..     .+...++.-++++.+++..|..+|..+... .+.-........+..-+.-+++.++++...+...
T Consensus       208 nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEF  282 (859)
T KOG1241|consen  208 NFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEF  282 (859)
T ss_pred             hhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence               1222322     234445566778889999999998887533 2232333334445555666788888888888776


Q ss_pred             HHHhccCCcc----hHHHHH---------------cCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHH
Q 040749          510 LFNLSLNQAN----KARAID---------------AGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHK  563 (643)
Q Consensus       510 L~nLs~~~~n----~~~lv~---------------~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~  563 (643)
                      =.++|...-.    -..+++               .+++|.|+++|..       .+......|-.+|..++..-     
T Consensus       283 WsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-----  357 (859)
T KOG1241|consen  283 WSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-----  357 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-----
Confidence            6666632111    011222               4677889999865       22344555555565554421     


Q ss_pred             hhcCCcHHHHHH----HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          564 IGQLSFIETLVE----YIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       564 i~~~g~i~~Lv~----lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                        ....++..+.    -+++.+-+.++.|+.++..+-.+....+-.-+..+++|.++.++.+.+--+++.+.+.|..+.+
T Consensus       358 --~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d  435 (859)
T KOG1241|consen  358 --GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIAD  435 (859)
T ss_pred             --cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHh
Confidence              2234444444    4456677789999999988877655555555667899999999998888899999999988876


Q ss_pred             h
Q 040749          640 S  640 (643)
Q Consensus       640 ~  640 (643)
                      +
T Consensus       436 ~  436 (859)
T KOG1241|consen  436 F  436 (859)
T ss_pred             h
Confidence            5

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.60  E-value=0.024  Score=62.40  Aligned_cols=216  Identities=17%  Similarity=0.175  Sum_probs=144.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC------Cc
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI------DE  435 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~------~~  435 (643)
                      ..+..++....+.+..++..|+..|-.|.....-.+.      .....++.++.++..++..|+.++.-++.      ..
T Consensus       198 ~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~------~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~  271 (823)
T KOG2259|consen  198 HAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA------CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLER  271 (823)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHH------HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            3444478888888899999999998888742211111      23456788888889999888766654432      11


Q ss_pred             c-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---------------------------------------
Q 040749          436 S-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML---------------------------------------  475 (643)
Q Consensus       436 ~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---------------------------------------  475 (643)
                      + +...+ ...++..+.+.+...+..+|..|+.+|..+-..                                       
T Consensus       272 e~~e~kl-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsG  350 (823)
T KOG2259|consen  272 ESEEEKL-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSG  350 (823)
T ss_pred             hhhhhhh-HHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccC
Confidence            1 12222 234667777777776666666666555443110                                       


Q ss_pred             ------------ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-hHHHHHcCChHHHHHHhccCChh
Q 040749          476 ------------DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KARAIDAGIVLPLMNLLEERNLG  542 (643)
Q Consensus       476 ------------~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~  542 (643)
                                  ++.-..|..+|+-.++|.-|.+.-.++++.|+..++.|+.+.+. ...     ++.-|+.++++....
T Consensus       351 k~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~  425 (823)
T KOG2259|consen  351 KEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEV  425 (823)
T ss_pred             ccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHH
Confidence                        11112344566777777777776678999999999999875443 322     467899999998889


Q ss_pred             hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       543 ~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      ++..|+.+|..++.+-.     ++..-++.+.+-|.+.++.+|+..-.+|.+
T Consensus       426 VRL~ai~aL~~Is~~l~-----i~eeql~~il~~L~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  426 VRLKAIFALTMISVHLA-----IREEQLRQILESLEDRSVDVREALRELLKN  472 (823)
T ss_pred             HHHHHHHHHHHHHHHhe-----ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            99999999999987632     233457778888888888888877766644

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=96.59  E-value=0.035  Score=51.32  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=97.1

Q ss_pred             hhhccCChHHHHHHhccCCh------hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHH
Q 040749          481 TIGLSDGIPPLVDLLQNGTI------RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILL  552 (643)
Q Consensus       481 ~i~~~g~i~~Lv~lL~~~~~------~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~  552 (643)
                      .+.+.+++..|+.++.+++.      .....++.+...|-.+.-.-+..++...|...+.++..  .+..+...|+++|.
T Consensus         6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            34567899999999998763      56677888888888776666777777788888888876  36788999999999


Q ss_pred             HHhCChhh-HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          553 LLATHPEG-RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       553 ~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      ++..+... ...+.+.=-++.|+..|+..++..+.+|++.+-.|....+
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            99887666 5555555569999999999999999999999998876544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.52  E-value=0.019  Score=63.27  Aligned_cols=214  Identities=15%  Similarity=0.141  Sum_probs=138.3

Q ss_pred             HHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc---c---chhhh
Q 040749          409 LVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD---E---NKITI  482 (643)
Q Consensus       409 Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~---~---~k~~i  482 (643)
                      |..+....|..++.+|+..|+.|+..-.--..     .....++.++.....+|..|..+++-.+...   .   +-..=
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k  277 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEK  277 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccccccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhh
Confidence            66667777899999999999988862222111     2455677888888888888877777654221   0   00000


Q ss_pred             hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc--------------------------------------------
Q 040749          483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA--------------------------------------------  518 (643)
Q Consensus       483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~--------------------------------------------  518 (643)
                      ....++..+.+.+++.+..++..|+.+|..+....+                                            
T Consensus       278 l~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~adv  357 (823)
T KOG2259|consen  278 LKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADV  357 (823)
T ss_pred             hHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccC
Confidence            113456666666777666666666655543321111                                            


Q ss_pred             -------chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH
Q 040749          519 -------NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       519 -------n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                             .-..++..|+-..++.-|.+.--+++.+|+..++.|+.+..+-   . ..++..|++++.+.-..+|..|..+
T Consensus       358 psee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F---A-~~aldfLvDMfNDE~~~VRL~ai~a  433 (823)
T KOG2259|consen  358 PSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGF---A-VRALDFLVDMFNDEIEVVRLKAIFA  433 (823)
T ss_pred             chhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCc---H-HHHHHHHHHHhccHHHHHHHHHHHH
Confidence                   0112344555566666665555678899999999998754221   1 2467788899988778899999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          592 LLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      |..++.+      ..+++.-++.+...+.+-++.+|+.+..+|.+.
T Consensus       434 L~~Is~~------l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  434 LTMISVH------LAIREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHH------heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            9888765      223445677777888888888888877777654

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.40  E-value=0.092  Score=61.77  Aligned_cols=217  Identities=17%  Similarity=0.200  Sum_probs=133.8

Q ss_pred             CCChHHHHHHHHHHHHhcCCcchHHHHHh--cCChHHHHHHhcCCCHHHHHHHHHHHHhccccc--cchhhhhccCChHH
Q 040749          415 YPDSKILEHAVTAVLNLSIDESNKRLIAQ--QGAIPAIIEILQSGSTEARENSAAALFSLSMLD--ENKITIGLSDGIPP  490 (643)
Q Consensus       415 ~~d~~~~~~a~~~L~nLs~~~~~k~~i~~--~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~  490 (643)
                      +.+..+|..+...|..++..+........  ......+.+.+++....++.....+|..|-...  ++...+  ...|+-
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHHH
Confidence            34778899999999998877444333221  123334444444444555666666665553221  222222  234455


Q ss_pred             HHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcC------ChHHHHHHhccC--ChhhHHHH--HHHHHHHhCChhh
Q 040749          491 LVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAG------IVLPLMNLLEER--NLGMVDEA--LSILLLLATHPEG  560 (643)
Q Consensus       491 Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G------~v~~Lv~lL~~~--~~~~~~~A--l~~L~~La~~~~~  560 (643)
                      ++-.+++.+...+..|..+|.+++.    .....+.|      .+...+.++..+  .......|  +-++..+...   
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e---  815 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE---  815 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH---
Confidence            5555577788899999999998873    11222222      444555555432  22222222  2222322221   


Q ss_pred             HHHhhcC----CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749          561 RHKIGQL----SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL  636 (643)
Q Consensus       561 ~~~i~~~----g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  636 (643)
                      ...+.+.    +.+..+...|.++++.+...|+..+..++..-|+.+..-....+++.+..+++.++...+.++.-+|..
T Consensus       816 ~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~Llek  895 (1176)
T KOG1248|consen  816 FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEK  895 (1176)
T ss_pred             HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            1122232    445556666778899999999999999999888777666666789999999999999999999999998


Q ss_pred             HHhh
Q 040749          637 ISKS  640 (643)
Q Consensus       637 L~~~  640 (643)
                      |.+.
T Consensus       896 Lirk  899 (1176)
T KOG1248|consen  896 LIRK  899 (1176)
T ss_pred             HHHH
Confidence            8654

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.36  E-value=0.14  Score=57.38  Aligned_cols=232  Identities=15%  Similarity=0.157  Sum_probs=135.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc--hhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP--ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~--~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      .+...+..|++.++.++.+|+..+..+++--.  .--..+...|.  .|...|..+++++.-..+.+|..+...- +-..
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvi-gm~k  876 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVI-GMTK  876 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhc-cccc
Confidence            45667778899999999999999998883110  01112333333  3556788888887665555554443210 0011


Q ss_pred             HH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          441 IA--QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       441 i~--~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      +.  ..+.+|.|.-+|++....+++++...+..++..........+ -..-=.|+++|++.+.+.+..|..++..++..-
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhc
Confidence            11  357899999999999999999999999999855332222222 123345777888877778877776666554311


Q ss_pred             c------------------ch------HHHH-H-cC---ChHHHHHHhccCChhhHHHHHHHHHHHhC--ChhhHHHhhc
Q 040749          518 A------------------NK------ARAI-D-AG---IVLPLMNLLEERNLGMVDEALSILLLLAT--HPEGRHKIGQ  566 (643)
Q Consensus       518 ~------------------n~------~~lv-~-~G---~v~~Lv~lL~~~~~~~~~~Al~~L~~La~--~~~~~~~i~~  566 (643)
                      .                  ||      ..+| + .|   ++|.|+.=-..++..++.-.+.+|..+-.  .+.++.-|. 
T Consensus       957 GPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiy- 1035 (1172)
T KOG0213|consen  957 GPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIY- 1035 (1172)
T ss_pred             CHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHH-
Confidence            1                  10      0111 1 22   22333322222555555555555555533  122222222 


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                       ...|.|-+.|.+.++.-|.-|+.++.+|+-+.
T Consensus      1036 -av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1036 -AVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             -HhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence             24566666666677778888888888887654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.28  E-value=0.092  Score=60.81  Aligned_cols=228  Identities=16%  Similarity=0.143  Sum_probs=154.0

Q ss_pred             CcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHh-ccccccch
Q 040749          405 AIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN---KRLIAQQGAIPAIIEILQSGSTEARENSAAALFS-LSMLDENK  479 (643)
Q Consensus       405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~---k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~~~k  479 (643)
                      -+|.+++.|-+     |.+-+++|.-|+.. |-+   ...-..-|++|-++++|++...|+|..-+-+=.. |+.++.++
T Consensus       473 QLPiVLQVLLS-----QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  473 QLPIVLQVLLS-----QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             hcchHHHHHHH-----HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence            35556665433     33444445444431 212   1222367999999999999999988765554444 55666777


Q ss_pred             hhhhccCChHHHHHHhccC---ChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHH
Q 040749          480 ITIGLSDGIPPLVDLLQNG---TIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLL  554 (643)
Q Consensus       480 ~~i~~~g~i~~Lv~lL~~~---~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~L  554 (643)
                      ..+++.++-.-.+..|..+   +++-+.-|+-.|..++.+ +-.+....+.+.+...+.+|.++ .+-++.-++-+|..|
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            7788766655566666552   346677788888888764 44566678899999999999884 566677788888888


Q ss_pred             hC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC----HHHHHHH------------HHCCcH---HH
Q 040749          555 AT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN----SSFILAA------------LQYGVY---EH  614 (643)
Q Consensus       555 a~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~----~~~~~~~------------~~~g~i---~~  614 (643)
                      =. ..+.|=.=.+.++...|..+|.+..|++|..|+-+|..+..+.    ++....+            .+.-+.   ..
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            55 4555544456788999999999999999999999999987753    2211111            122222   36


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHH
Q 040749          615 LIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       615 L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ++.++..|++-++...+-.|..+
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~  730 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHF  730 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHH
Confidence            77788899998887666666554

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.32  Score=55.15  Aligned_cols=217  Identities=15%  Similarity=0.120  Sum_probs=113.5

Q ss_pred             HHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCC
Q 040749          409 LVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDG  487 (643)
Q Consensus       409 Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~  487 (643)
                      |.+=|++.+.-++-.|+.+|++++..+-.      ....|.+.++|++.++.+|..|+-+...+-.- ++.-     .-+
T Consensus       112 lknDL~s~nq~vVglAL~alg~i~s~Ema------rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~-----e~f  180 (866)
T KOG1062|consen  112 LKNDLNSSNQYVVGLALCALGNICSPEMA------RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLV-----EHF  180 (866)
T ss_pred             HHhhccCCCeeehHHHHHHhhccCCHHHh------HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHH-----HHh
Confidence            33445666777888888899888843222      33567777888888888888888877765321 1111     123


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHHHHHcCChHHH---------------------------------H
Q 040749          488 IPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKARAIDAGIVLPL---------------------------------M  533 (643)
Q Consensus       488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~lv~~G~v~~L---------------------------------v  533 (643)
                      ++....+|.+.+..+...++..+..+|.. +++-..+-+  .++.|                                 +
T Consensus       181 ~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlL  258 (866)
T KOG1062|consen  181 VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLL  258 (866)
T ss_pred             hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHH
Confidence            44444455444444444444444444432 222111111  22222                                 3


Q ss_pred             HHhccCChhhHHHHHHHHHHHhCChhhHHHhhcC---CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH----
Q 040749          534 NLLEERNLGMVDEALSILLLLATHPEGRHKIGQL---SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA----  606 (643)
Q Consensus       534 ~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~---g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~----  606 (643)
                      .+|..++.+..+....+|+.++.+-+.-.-+..+   .+|..++.+.  .++..+..|+.+|..+..+...+...+    
T Consensus       259 riLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~--~~~~LrvlainiLgkFL~n~d~NirYvaLn~  336 (866)
T KOG1062|consen  259 RILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIR--SNSGLRVLAINILGKFLLNRDNNIRYVALNM  336 (866)
T ss_pred             HHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhcc--CCchHHHHHHHHHHHHhcCCccceeeeehhh
Confidence            3334445555555556666665532221111111   1222222222  345567777777776655443322221    


Q ss_pred             ----H--HCCcH----HHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          607 ----L--QYGVY----EHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       607 ----~--~~g~i----~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                          +  +..++    ..+++.+++.++-+|++|..++..|-+.
T Consensus       337 L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~  380 (866)
T KOG1062|consen  337 LLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE  380 (866)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc
Confidence                1  11122    2566777778888888888888776543

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.23  E-value=0.03  Score=53.95  Aligned_cols=121  Identities=14%  Similarity=0.087  Sum_probs=89.5

Q ss_pred             hhhHHHHHHHHHHhccCCcchHHHHH----------------cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCC
Q 040749          500 IRGKKDAVTALFNLSLNQANKARAID----------------AGIVLPLMNLLEE------RNLGMVDEALSILLLLATH  557 (643)
Q Consensus       500 ~~~~~~A~~aL~nLs~~~~n~~~lv~----------------~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~  557 (643)
                      ......++..|.||+..++.+..+++                ..++..|+..+..      ....-.+....+|.|+++.
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            33455677888888888777776554                2356777777755      3345578899999999999


Q ss_pred             hhhHHHhhcC--Cc--HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--CCcHHHHHHHhh
Q 040749          558 PEGRHKIGQL--SF--IETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ--YGVYEHLIQLTE  620 (643)
Q Consensus       558 ~~~~~~i~~~--g~--i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~--~g~i~~L~~ll~  620 (643)
                      +++|..+.+.  +.  +..|+.++.+.|..-|.-+++++.|+|-....+-..+-.  .++++.|+.-+.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            9999999874  34  677777777778888899999999999876655433332  467887776665

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.08  E-value=0.0046  Score=62.82  Aligned_cols=54  Identities=20%  Similarity=0.482  Sum_probs=43.6

Q ss_pred             CCCccccccCcccccC--c-e-ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          271 IPHEFLCPITLEIMRD--P-V-IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~d--P-v-~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      -...|.|||++..|..  + | +.+|||+|+..+|.+.-  ....||.|+.++...++++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            4567999999999963  3 3 34999999999999873  3457999999999888765

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.04  E-value=0.13  Score=59.07  Aligned_cols=159  Identities=18%  Similarity=0.194  Sum_probs=116.0

Q ss_pred             HHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcH
Q 040749          328 YALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP  407 (643)
Q Consensus       328 ~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~  407 (643)
                      .++|.+|.+....+.+.                 ...+..++.+.+.|.+.++-.-.-|...++.+|+-  ++.   ++.
T Consensus        38 dAmK~iIa~M~~G~dms-----------------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~--~lL---avN   95 (757)
T COG5096          38 DAMKKIIAQMSLGEDMS-----------------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPEL--ALL---AVN   95 (757)
T ss_pred             HHHHHHHHHHhcCCChH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHH--HHH---HHH
Confidence            46777777755433322                 45667777777778887776666777777766622  222   466


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC
Q 040749          408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG  487 (643)
Q Consensus       408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~  487 (643)
                      .+.+=+.++++.+|..|++++..+=.     ..+ -..+++++.+.+.++++.+|.+|+-+++++-..  .+....+.|.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~-----~el-~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~  167 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRV-----KEL-LGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGL  167 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcCh-----HHH-HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccH
Confidence            77778888999999999998876542     112 234688999999999999999999999998532  2334456788


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          488 IPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+..++.+.++.+..+|+.+|+.+...
T Consensus       168 ~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         168 IDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            89999999999999999999999887643

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=96.04  E-value=0.76  Score=53.58  Aligned_cols=136  Identities=16%  Similarity=0.190  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHh----cCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 040749          379 QKEAVRKIRLLSKENPENRILIAD----CGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEI  453 (643)
Q Consensus       379 ~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l  453 (643)
                      ..-++.+|+++.+.+|+.-..+..    -|..+.+..+|. ++++.++.-|+.++.-+..+.+.-..|++.|.+..|+.+
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~l 1821 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTL 1821 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHH
Confidence            346788999999888866554432    367777777776 458899999999999888888888899999999999999


Q ss_pred             hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhcc
Q 040749          454 LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSL  515 (643)
Q Consensus       454 L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~  515 (643)
                      |.+ -+..|+.+..+|..|+++.+..+...+.|++.-+.+++... ++..+..|+..+..|..
T Consensus      1822 LHS-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1822 LHS-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             Hhc-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            965 46788999999999999988877777888888888877543 45666666666666653

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.02  E-value=0.14  Score=57.31  Aligned_cols=151  Identities=13%  Similarity=0.116  Sum_probs=102.8

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH---HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 040749          487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR---AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHK  563 (643)
Q Consensus       487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~---lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~  563 (643)
                      .+...+..|++.++.++..|+..+..|+..-.++..   |...|+  .|.+.|....+++.-..++++..+...-.....
T Consensus       800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km  877 (1172)
T KOG0213|consen  800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKM  877 (1172)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhcccccc
Confidence            345556678889999999999999888754344322   333443  367777778888877777777776552211111


Q ss_pred             h-hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          564 I-GQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       564 i-~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      . --.+.+|.|..+|++....++++++..+..+|.++++++..-.=-.+-=-|++++.+.+..+++.|...+-.+.+
T Consensus       878 ~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  878 TPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            1 114789999999999999999999999999999888643221001122246677777788888888877666554

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.01  E-value=0.47  Score=53.58  Aligned_cols=266  Identities=13%  Similarity=0.135  Sum_probs=167.8

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHhhc------cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749          362 EEIVSLVEQLSS--SKLEVQKEAVRKIRLLSK------ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI  433 (643)
Q Consensus       362 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~------~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~  433 (643)
                      ..+-.+++....  ++..+|..|+.+|.+-..      +++..|..     .+...+..-.++|.+++..|..+|..+..
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~d~~i~~aa~~ClvkIm~  246 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSPDEEIQVAAFQCLVKIMS  246 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCCcHHHHHHHHHHHHHHHH
Confidence            344455554442  456777788887775431      22233333     34456677788899999999999988764


Q ss_pred             -CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-c-----------chh----hhh---ccCChHHHHH
Q 040749          434 -DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-E-----------NKI----TIG---LSDGIPPLVD  493 (643)
Q Consensus       434 -~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~-----------~k~----~i~---~~g~i~~Lv~  493 (643)
                       +=+.-...+....+..-+..+++.++++...+...-++++..+ +           +..    .+.   -.+.+|.|++
T Consensus       247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~  326 (859)
T KOG1241|consen  247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLE  326 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHH
Confidence             2222222334445556667778888888888887666665321 0           000    111   1367888888


Q ss_pred             Hhcc-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc----cCChhhHHHHHHHHHHHhCChhh-H
Q 040749          494 LLQN-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE----ERNLGMVDEALSILLLLATHPEG-R  561 (643)
Q Consensus       494 lL~~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~----~~~~~~~~~Al~~L~~La~~~~~-~  561 (643)
                      +|..       +++...+.|..+|.-++..       +...++++.+.++.    .++..-++.|+.++..+-..++. +
T Consensus       327 ~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~  399 (859)
T KOG1241|consen  327 LLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDK  399 (859)
T ss_pred             HHHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhh
Confidence            8853       1356677787777766532       33445666666654    46667788888888777654432 2


Q ss_pred             HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH-HHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAA-LQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~-~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ..-.-.++++.++.++.+.+--++..+.|.|..+|...++.+.-. ...+.++.|+.-+ +..|++-.++.|.+-.|.+.
T Consensus       400 Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~DePrva~N~CWAf~~Laea  478 (859)
T KOG1241|consen  400 LTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-NDEPRVASNVCWAFISLAEA  478 (859)
T ss_pred             hhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hhCchHHHHHHHHHHHHHHH
Confidence            222335789999999998888889999999999998877433221 1233344444333 34788888999988888753

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.95  E-value=0.029  Score=47.88  Aligned_cols=66  Identities=15%  Similarity=0.119  Sum_probs=55.8

Q ss_pred             hHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040749          543 MVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR--EGTPKNKECATAVLLELGANNSSFILAALQ  608 (643)
Q Consensus       543 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~  608 (643)
                      .+...+.+|+||+. ++..+..+.+.|+++.++..-.  ..+|-.+|.|+.++.+||.+++++...+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            35667899999987 6788899999999999988654  567999999999999999999988777654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.93  E-value=0.0033  Score=65.90  Aligned_cols=47  Identities=30%  Similarity=0.619  Sum_probs=38.2

Q ss_pred             CCCccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          271 IPHEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +-+--+||+|++.|.+-|    .+.|.|+|...|+++|+..   +||+||.-.+
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence            334458999999998765    4579999999999999864   7999987655

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.92  E-value=0.0094  Score=44.84  Aligned_cols=55  Identities=29%  Similarity=0.195  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749          459 TEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL  513 (643)
Q Consensus       459 ~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  513 (643)
                      +.+|..|+++|.+++........-....+++.|+.+|++++..++..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999876554444444578899999999999999999999999875

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=95.88  E-value=0.015  Score=43.68  Aligned_cols=55  Identities=24%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Q 040749          418 SKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL  472 (643)
Q Consensus       418 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~L  472 (643)
                      +.+|..|+++|++++........-....+++.|+.+|++++..+|.+|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4688999999999887655544444577899999999999999999999999875

...

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.82  E-value=0.11  Score=58.65  Aligned_cols=73  Identities=19%  Similarity=0.204  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      ......+...+++.++.+|..|+-.+.++-   ..+.......|.++.|-.++...++.+..+|+.+|..+.....
T Consensus       120 ey~~~Pl~~~l~d~~~yvRktaa~~vakl~---~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  120 EYLCDPLLKCLKDDDPYVRKTAAVCVAKLF---DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHHHHhccCCChhHHHHHHHHHHHhh---cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            356778889999999999999998888886   3455667789999999999998899999999999999987443

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.78  E-value=0.24  Score=56.86  Aligned_cols=168  Identities=20%  Similarity=0.176  Sum_probs=124.0

Q ss_pred             hcCCCHHHHHHHHHH-HHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHH
Q 040749          371 LSSSKLEVQKEAVRK-IRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPA  449 (643)
Q Consensus       371 L~s~~~~~~~~A~~~-L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~  449 (643)
                      |.+.+...+..|++. |..+..++ +.-      -..|-+++...+.|.+++.-.-.-|.+.+...+....+    +++.
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~-dms------sLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL----avNt   96 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGE-DMS------SLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL----AVNT   96 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCC-ChH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH----HHHH
Confidence            666677778888774 44444332 211      13456667666778888887777777777755543333    4677


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCCh
Q 040749          450 IIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIV  529 (643)
Q Consensus       450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v  529 (643)
                      +.+=+.+.++++|-.|.+++..|-..      -....+++++.+++.++++.+++.|+.|+.++-..  ++....+.|.+
T Consensus        97 i~kDl~d~N~~iR~~AlR~ls~l~~~------el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~~~~g~~  168 (757)
T COG5096          97 IQKDLQDPNEEIRGFALRTLSLLRVK------ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLYHELGLI  168 (757)
T ss_pred             HHhhccCCCHHHHHHHHHHHHhcChH------HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhhhcccHH
Confidence            77888899999999999999887321      11134689999999999999999999999988643  33445678899


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          530 LPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      ..+..++.+.++.+..+|+.+|..+...
T Consensus       169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         169 DILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence            9999999999999999999999988653

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=95.77  E-value=0.035  Score=47.40  Aligned_cols=65  Identities=31%  Similarity=0.387  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC--CChHHHHHHHHHHHHhcC-CcchHHHHHh
Q 040749          379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY--PDSKILEHAVTAVLNLSI-DESNKRLIAQ  443 (643)
Q Consensus       379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--~d~~~~~~a~~~L~nLs~-~~~~k~~i~~  443 (643)
                      +...++.|.+++..++.++..+.+.|+||.+++.-.-  .+|-+++.|+.++.||+. +++|+..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            4567788999999999999999999999999986654  479999999999999998 5678888764

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.76  E-value=0.25  Score=48.55  Aligned_cols=139  Identities=15%  Similarity=0.110  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCCh--hhHHHhhcCCcHHHHH
Q 040749          502 GKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATHP--EGRHKIGQLSFIETLV  574 (643)
Q Consensus       502 ~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv  574 (643)
                      -..+|+..|..++++++.+..++++..--.|-.+|..     +.+-++-.++++++.|..+.  +.-..+...++||.++
T Consensus        95 RVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   95 RVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             hHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3457888888899999999999999887777777754     45677888999999998753  3344556789999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHH--H-HHHHHH----CCcHHHHH-HHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          575 EYIREGTPKNKECATAVLLELGANNSS--F-ILAALQ----YGVYEHLI-QLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~--~-~~~~~~----~g~i~~L~-~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +.+..||...|..|..|+..+-..+..  + |+..-+    .-++..++ .+...+++|+-+.+.++.-.|++.
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            999999999999999999887655432  1 221111    12334333 455667888888888887777653

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.75  E-value=1.4  Score=50.17  Aligned_cols=68  Identities=12%  Similarity=0.062  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI  433 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~  433 (643)
                      +...+...++|+..++.++++|+-+...+....|+.-..     +++..-++|...+..+...++..+..++.
T Consensus       141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~-----f~~~~~~lL~ek~hGVL~~~l~l~~e~c~  208 (866)
T KOG1062|consen  141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEH-----FVIAFRKLLCEKHHGVLIAGLHLITELCK  208 (866)
T ss_pred             HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHH-----hhHHHHHHHhhcCCceeeeHHHHHHHHHh
Confidence            345666677888899999999998888877666654433     34455556665566565556666655554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=0.33  Score=54.18  Aligned_cols=264  Identities=16%  Similarity=0.159  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCC--hHHHHHHHHHHHHhcCCcchH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPD--SKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d--~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      +..+..+-..|.|.++-.+.-|+..+.++.  +.+++..+..  -||   ++|-+++  .-++..|+-+|+.|-...+  
T Consensus       110 klvin~iknDL~srn~~fv~LAL~~I~niG--~re~~ea~~~--DI~---KlLvS~~~~~~vkqkaALclL~L~r~sp--  180 (938)
T KOG1077|consen  110 KLVINSIKNDLSSRNPTFVCLALHCIANIG--SREMAEAFAD--DIP---KLLVSGSSMDYVKQKAALCLLRLFRKSP--  180 (938)
T ss_pred             HHHHHHHHhhhhcCCcHHHHHHHHHHHhhc--cHhHHHHhhh--hhH---HHHhCCcchHHHHHHHHHHHHHHHhcCc--
Confidence            345566667788888888999999999886  3445544432  344   5565553  3456666666766654321  


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhcc-C------------ChhhH
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQN-G------------TIRGK  503 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~-~------------~~~~~  503 (643)
                      ..+-..+.+..++.+|...+..+...+...+-.|+..  ++++..+.  -++..|..+... +            .+=..
T Consensus       181 Dl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~riv~~~~t~~qdYTyy~vP~PWL~  258 (938)
T KOG1077|consen  181 DLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQ  258 (938)
T ss_pred             cccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHHHHhhcccchhhceeecCCChHHH
Confidence            1111224567778888766655444444444444432  12222111  111222222111 1            12233


Q ss_pred             HHHHHHHHHhcc--CCcchHHHHHcCChHHHHHHhccC--C-----hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHH
Q 040749          504 KDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEER--N-----LGMVDEALSILLLLATHPEGRHKIGQLSFIETLV  574 (643)
Q Consensus       504 ~~A~~aL~nLs~--~~~n~~~lv~~G~v~~Lv~lL~~~--~-----~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv  574 (643)
                      ...+++|.+.-.  ++..+.++.+  ++..++...+++  .     ...+...+--.-+|+.+-+.-..+.. .++..|.
T Consensus       259 vKl~rlLq~~p~~~D~~~r~~l~e--vl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~-~~~~~Lg  335 (938)
T KOG1077|consen  259 VKLLRLLQIYPTPEDPSTRARLNE--VLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS-RAVNQLG  335 (938)
T ss_pred             HHHHHHHHhCCCCCCchHHHHHHH--HHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH-HHHHHHH
Confidence            445555555432  1222333222  222223222210  0     11222223333344443322222222 3677777


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh-cCCHHHHHHHHHHHHHHHhhc
Q 040749          575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~-~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      .+|.+..+..|-.|+.-++.||+..+  ...++... ...++..+. ..+..++++|..+|..|++..
T Consensus       336 ~fls~rE~NiRYLaLEsm~~L~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  336 QFLSHRETNIRYLALESMCKLASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             HHhhcccccchhhhHHHHHHHHhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            78877777788888888888887643  22222222 445555555 567778888888888887653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.64  E-value=0.0069  Score=62.75  Aligned_cols=60  Identities=27%  Similarity=0.578  Sum_probs=49.3

Q ss_pred             cccccCcccccCc-----eecCCCCccchHHHHHHHhc-CCCCCCCcCcccccCCCCccHHHHHHH
Q 040749          275 FLCPITLEIMRDP-----VIIASGQTFERESVQKWFDS-NHRTCPKTRQTLAHLSIAPNYALKNLI  334 (643)
Q Consensus       275 f~CpIc~~~m~dP-----v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~~l~pn~~l~~~i  334 (643)
                      -.||||++-+.-|     |++.|||-|-..||++|+.+ -...||.|.-......+.|-+++|...
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~qa   70 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQA   70 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHHH
Confidence            5799999988866     56789999999999999962 224699999888888888888887654

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.64  E-value=0.32  Score=48.64  Aligned_cols=192  Identities=15%  Similarity=0.172  Sum_probs=127.4

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHH-------HhCCCCC--h---HHHHHHHHHHHHhcCCcchHHHH
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLV-------QLLPYPD--S---KILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv-------~lL~~~d--~---~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      +++.+..|+.+|..--...++.--.+-. .|.+..|+       ..++.+.  +   .-..+|+..|--++.+++.|..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            4677888888877655333443333333 45555553       2344332  1   23457777777889999999999


Q ss_pred             HhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhcccccc--chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          442 AQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDE--NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      .++...--|.-.|+..+     ...|-.+..++..|...++  .-..+...+.+|..++.+..|+.-.|..|...+..+-
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            99887666666665432     5678888899999886543  3344556899999999999999999999999999887


Q ss_pred             cCCcchHHH-------HH-cCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749          515 LNQANKARA-------ID-AGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRHKIGQ  566 (643)
Q Consensus       515 ~~~~n~~~l-------v~-~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~  566 (643)
                      .++.+-..+       .. ..++..++.- ..++++.+....+.+-..|+.++..+.++..
T Consensus       168 ~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~  228 (262)
T PF04078_consen  168 LDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ  228 (262)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred             cchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            666553332       11 2233444433 3458889999999999999999999888764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.62  E-value=0.049  Score=52.45  Aligned_cols=122  Identities=16%  Similarity=0.191  Sum_probs=89.9

Q ss_pred             CChHHHHHHHHHHHHhcCCcchHHHHHh----------------cCChHHHHHHhcCC------CHHHHHHHHHHHHhcc
Q 040749          416 PDSKILEHAVTAVLNLSIDESNKRLIAQ----------------QGAIPAIIEILQSG------STEARENSAAALFSLS  473 (643)
Q Consensus       416 ~d~~~~~~a~~~L~nLs~~~~~k~~i~~----------------~g~i~~Lv~lL~~~------~~e~~~~Aa~~L~~Ls  473 (643)
                      ++......++..|.||+..+.....+..                ..++..|++.+..|      ...-..+.+.++.|+|
T Consensus         7 ~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS   86 (192)
T PF04063_consen    7 PKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS   86 (192)
T ss_pred             CCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc
Confidence            3444556678888999888777665442                23677788877652      2345678899999999


Q ss_pred             ccccchhhhhc--cCC--hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHc---CChHHHHHHhc
Q 040749          474 MLDENKITIGL--SDG--IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA---GIVLPLMNLLE  537 (643)
Q Consensus       474 ~~~~~k~~i~~--~g~--i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~---G~v~~Lv~lL~  537 (643)
                      ..++.|..+..  .+.  +..|+.++.+.+..-+.-++.+|.|+|...+....+...   +++|.|+--|.
T Consensus        87 ~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   87 QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999886  344  778888888888888889999999999999988887763   44555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.60  E-value=0.0091  Score=57.65  Aligned_cols=54  Identities=22%  Similarity=0.444  Sum_probs=46.3

Q ss_pred             CccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          273 HEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      ..|.||+|.+.+.+.+    .-+|||.+|..|.++.+... ..||+|+.++...++++-
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D-~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKD-MVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhcccc-ccccCCCCcCcccceEee
Confidence            5699999999998753    34899999999999998864 589999999999988764

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.58  E-value=0.28  Score=56.48  Aligned_cols=232  Identities=14%  Similarity=0.100  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHH-HHHHHHHHHhcCCcchH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL-EHAVTAVLNLSIDESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~-~~a~~~L~nLs~~~~~k  438 (643)
                      +...+..+++.|...+.++|..|+++++-+++.-++.+-.-    .+..|+.-+-++-...+ ..++.....++.-++..
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~----~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~  120 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLET----IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSS  120 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHH----HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCcc
Confidence            56789999999999999999999999999985444333221    23344443222222222 22233222223222222


Q ss_pred             HHHHhcCChHHHHHHhcCC-----C-HHHHHHHHHHHH----hccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749          439 RLIAQQGAIPAIIEILQSG-----S-TEARENSAAALF----SLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT  508 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~-----~-~e~~~~Aa~~L~----~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~  508 (643)
                      .....+.+.+.+...|...     + .-++-.++..+.    +++..=.+    ...+....++.-+.+....+++.|+.
T Consensus       121 ~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~----fh~~il~~l~~ql~s~R~aVrKkai~  196 (1233)
T KOG1824|consen  121 SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN----FHLSILKCLLPQLQSPRLAVRKKAIT  196 (1233)
T ss_pred             ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc----hHHHHHHHHhhcccChHHHHHHHHHH
Confidence            2233344455555544332     1 223333443333    22211000    12344556666666777789999999


Q ss_pred             HHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH---hcCChHH
Q 040749          509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI---REGTPKN  584 (643)
Q Consensus       509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL---~~~s~~~  584 (643)
                      +|..|+..-.+-   +-.+++..|++-|.. ..+.....-..+|..++.....|.--.-...++.+.++.   ...+.+.
T Consensus       197 ~l~~la~~~~~~---ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDEL  273 (1233)
T KOG1824|consen  197 ALGHLASSCNRD---LYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDEL  273 (1233)
T ss_pred             HHHHHHHhcCHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHH
Confidence            999998654332   222344455555543 333334444556666665433332222245688888888   5567889


Q ss_pred             HHHHHHHHHHHhcCCHHH
Q 040749          585 KECATAVLLELGANNSSF  602 (643)
Q Consensus       585 ~e~A~~~L~~L~~~~~~~  602 (643)
                      |+.++.+|-.+....|..
T Consensus       274 rE~~lQale~fl~rcp~e  291 (1233)
T KOG1824|consen  274 REYCLQALESFLRRCPKE  291 (1233)
T ss_pred             HHHHHHHHHHHHHhChhh
Confidence            999999998887777654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.57  E-value=0.18  Score=57.05  Aligned_cols=242  Identities=18%  Similarity=0.163  Sum_probs=144.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ...+.++..+...|.+.++-.---+.+.++..|+..     .+++..+++=...+++.++.-|++++..+-.+     .+
T Consensus        49 slF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i  118 (734)
T KOG1061|consen   49 SLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KI  118 (734)
T ss_pred             hhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HH
Confidence            346667777777776655555455666666655432     34566666666777899998888887665432     11


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-h
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-K  520 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~  520 (643)
                       ......+|.+.++++++.+|..|+..+.++-  +.+.......|.++.|-+++.+.++.+..+|+.+|..+...+.+ -
T Consensus       119 -~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~--~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~  195 (734)
T KOG1061|consen  119 -TEYLCDPLLKCLKDDDPYVRKTAAVCVAKLF--DIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVN  195 (734)
T ss_pred             -HHHHHHHHHHhccCCChhHHHHHHHHHHHhh--cCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCC
Confidence             1235788999999999999998888888773  44555566689999999999988999999999999999765543 1


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP--EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~--~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      ...+..-.+..++..+...++-   .-+.+|..++.+.  +.+++   ...+..+...+.+.++.+.-.++.++.++...
T Consensus       196 ~~~l~~~~~~~lL~al~ec~EW---~qi~IL~~l~~y~p~d~~ea---~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~  269 (734)
T KOG1061|consen  196 LLELNPQLINKLLEALNECTEW---GQIFILDCLAEYVPKDSREA---EDICERLTPRLQHANSAVVLSAVKVILQLVKY  269 (734)
T ss_pred             cccccHHHHHHHHHHHHHhhhh---hHHHHHHHHHhcCCCCchhH---HHHHHHhhhhhccCCcceEeehHHHHHHHHHH
Confidence            1111112233334444332211   1234444444421  11111   12345555566666666666777776666554


Q ss_pred             CHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749          599 NSSFILAALQYGVYEHLIQLTEGGT  623 (643)
Q Consensus       599 ~~~~~~~~~~~g~i~~L~~ll~~g~  623 (643)
                      -+. .....-...-++|+.++....
T Consensus       270 ~~~-~~~~~~~K~~~pl~tlls~~~  293 (734)
T KOG1061|consen  270 LKQ-VNELLFKKVAPPLVTLLSSES  293 (734)
T ss_pred             HHH-HHHHHHHHhcccceeeecccc
Confidence            333 222222234445555444443

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.52  E-value=0.0036  Score=45.60  Aligned_cols=46  Identities=22%  Similarity=0.296  Sum_probs=39.3

Q ss_pred             cccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749          275 FLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       275 f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      -.|.||.+---|.|+..|||. .|..|=.+.+...+..||.|+.++.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            459999999999999999996 5999988877777889999988764

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=95.47  E-value=0.0057  Score=63.40  Aligned_cols=35  Identities=17%  Similarity=0.471  Sum_probs=31.4

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHh
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD  306 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~  306 (643)
                      .+++.||||...++||+|++|||..|+.|-...+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            46899999999999999999999999999876554

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.43  E-value=0.038  Score=48.49  Aligned_cols=72  Identities=24%  Similarity=0.284  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHh
Q 040749          360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL  431 (643)
Q Consensus       360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nL  431 (643)
                      +-..+..|++.|. +.++....-|+..|+.+++..|..|..+-+.|+-..+..++.++|++++..|+.++-.+
T Consensus        41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            3467899999994 55777777899999999999999999999999999999999999999999999988654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.32  E-value=1.3  Score=51.80  Aligned_cols=238  Identities=16%  Similarity=0.206  Sum_probs=142.1

Q ss_pred             HHhcCCcHHHHHhCCCC-----ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc----CCC----HHHHHHHH
Q 040749          400 IADCGAIPPLVQLLPYP-----DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ----SGS----TEARENSA  466 (643)
Q Consensus       400 i~~~g~i~~Lv~lL~~~-----d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~----~~~----~e~~~~Aa  466 (643)
                      +.+.|++..++.++.+-     +.......+..|...++-..||..+.+.|+++.|++.|.    .+.    +++-+...
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            45678999999888752     345556667777777788999999999999999999884    333    55556555


Q ss_pred             HHHHhccccc---cchhhhh----------ccCChHHHHHHhccC----ChhhHHHHHHHHHHhccCCcchHHH-HHcCC
Q 040749          467 AALFSLSMLD---ENKITIG----------LSDGIPPLVDLLQNG----TIRGKKDAVTALFNLSLNQANKARA-IDAGI  528 (643)
Q Consensus       467 ~~L~~Ls~~~---~~k~~i~----------~~g~i~~Lv~lL~~~----~~~~~~~A~~aL~nLs~~~~n~~~l-v~~G~  528 (643)
                      .++-.|....   .......          ....+..|++.+.+.    ++......++.|-+|+...+..-.. ++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            5555553221   1111111          112356666666543    5677788888899998876665432 221  


Q ss_pred             hHHHHHH--hccCChhhHHHHHHHHHHHhC----Ch---hhHHHhhcCCcHHHHHHHHhcC--------ChHHHH-----
Q 040749          529 VLPLMNL--LEERNLGMVDEALSILLLLAT----HP---EGRHKIGQLSFIETLVEYIREG--------TPKNKE-----  586 (643)
Q Consensus       529 v~~Lv~l--L~~~~~~~~~~Al~~L~~La~----~~---~~~~~i~~~g~i~~Lv~lL~~~--------s~~~~e-----  586 (643)
                      +.+.+++  +......--...+..++.++.    +.   .-|..+++.|++...+++|...        +++.++     
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            1111111  100000000122344444433    33   3478889999999999988642        344444     


Q ss_pred             ---HHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHhh
Q 040749          587 ---CATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISKS  640 (643)
Q Consensus       587 ---~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~~  640 (643)
                         .++.+|.-||.+... .+.++..++++.|..|=+.. +.++-..|..+|..|++.
T Consensus       351 sLp~iL~lL~GLa~gh~~-tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~  407 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEP-TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAEN  407 (802)
T ss_pred             cHHHHHHHHHHHHhcCHH-HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcC
Confidence               477778888876543 34445667776666655433 455666777777777654

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.04  E-value=0.025  Score=41.50  Aligned_cols=41  Identities=20%  Similarity=0.592  Sum_probs=32.0

Q ss_pred             ccccCcc--cccCceecCCC-----CccchHHHHHHHhc-CCCCCCCcC
Q 040749          276 LCPITLE--IMRDPVIIASG-----QTFERESVQKWFDS-NHRTCPKTR  316 (643)
Q Consensus       276 ~CpIc~~--~m~dPv~~~cg-----~ty~r~~I~~~~~~-~~~~cP~~~  316 (643)
                      .|.||++  .-.+|.+.||.     +.+.+.|+.+|+.. +..+||.|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3889987  44578888875     56899999999985 356799984

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=94.92  E-value=0.0085  Score=47.67  Aligned_cols=48  Identities=25%  Similarity=0.564  Sum_probs=23.8

Q ss_pred             ccccccCccccc-C---ceec----CCCCccchHHHHHHHhc--CC--------CCCCCcCccccc
Q 040749          274 EFLCPITLEIMR-D---PVII----ASGQTFERESVQKWFDS--NH--------RTCPKTRQTLAH  321 (643)
Q Consensus       274 ~f~CpIc~~~m~-d---Pv~~----~cg~ty~r~~I~~~~~~--~~--------~~cP~~~~~l~~  321 (643)
                      +..|+||..... +   |+.+    .|+++|...|+.+||..  +.        .+||.|+.+++-
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            467999998754 2   4443    58999999999999983  11        249999988763

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.90  E-value=0.011  Score=60.70  Aligned_cols=47  Identities=30%  Similarity=0.482  Sum_probs=40.7

Q ss_pred             ccccCcccccCceecCCCCccchHHHHHHHhcC-CCCCCCcCcccccC
Q 040749          276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSN-HRTCPKTRQTLAHL  322 (643)
Q Consensus       276 ~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~  322 (643)
                      .|.||-+-=+|--|-||||..|-.|+..|-.+. ..+||+|+..+.-.
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            699999999998888999999999999999753 67899998776644

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=0.017  Score=55.85  Aligned_cols=38  Identities=34%  Similarity=0.553  Sum_probs=33.6

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS  307 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~  307 (643)
                      .+.+.-+|.+|++..+|||+.+.||.|||.||-+++-.
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila   76 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA   76 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence            35556688999999999999999999999999998864

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.68  E-value=2.5  Score=48.18  Aligned_cols=256  Identities=21%  Similarity=0.236  Sum_probs=156.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-Ccc-----
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DES-----  436 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~-----  436 (643)
                      ..+++=.+|.+...-+..+|+..+..+...++.   .+..  ++..|=.+++++.+.+|-.|+++|..++. ++.     
T Consensus       246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r---~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~c  320 (865)
T KOG1078|consen  246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSR---ELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVC  320 (865)
T ss_pred             HHHHHHHHHhchhHHHHHHHHHHHhhccccCHh---hcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccccc
Confidence            455566667777778888999999988754432   2222  67777788899999999999999998875 221     


Q ss_pred             hHH---HHHh---cCChHHHHHHhcCCCHHHHH----HHHHHHHhccccccchhhhh-------------ccCChHHHHH
Q 040749          437 NKR---LIAQ---QGAIPAIIEILQSGSTEARE----NSAAALFSLSMLDENKITIG-------------LSDGIPPLVD  493 (643)
Q Consensus       437 ~k~---~i~~---~g~i~~Lv~lL~~~~~e~~~----~Aa~~L~~Ls~~~~~k~~i~-------------~~g~i~~Lv~  493 (643)
                      |++   .|-.   .=+-..+..+|+.|+.....    ..+....++|  +++|..++             ..+.+..|.+
T Consensus       321 N~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~  398 (865)
T KOG1078|consen  321 NLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN  398 (865)
T ss_pred             chhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence            211   1211   11344566677777543333    3333344443  33333221             1244556666


Q ss_pred             Hhcc-CChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHH
Q 040749          494 LLQN-GTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIE  571 (643)
Q Consensus       494 lL~~-~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~  571 (643)
                      +|++ |--+.++....++..+.. +++.+..     ++..|..++.+.  .....+..+|..|...  |-....-...+.
T Consensus       399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc--e~~~i~~rILhlLG~E--gP~a~~Pskyir  469 (865)
T KOG1078|consen  399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC--EFTQIAVRILHLLGKE--GPKAPNPSKYIR  469 (865)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc--cchHHHHHHHHHHhcc--CCCCCCcchhhH
Confidence            6643 445566666666655543 3443332     345566666542  3345566666666431  111222345667


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          572 TLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       572 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+...+.-.+..+|..|+.+|..+..+++..     ...+...|.+.+.+.++.+++.|...|+.+..
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLEE  532 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhhh
Confidence            7777666677889999999999998554322     23456677788899999999999999998874

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.64  E-value=0.86  Score=51.74  Aligned_cols=209  Identities=14%  Similarity=0.117  Sum_probs=142.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHh
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQ  443 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~  443 (643)
                      -..|.++|.|.....+..|.+-|-.+...+.+.      ....|..|+-..+.+.+++.-.---|...+..+++-..+  
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--  108 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--  108 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--
Confidence            456888999888888888887655444333331      235788899889999999888777777777665554433  


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-CcchHH
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QANKAR  522 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n~~~  522 (643)
                        .|..+-+-|+.+++.+|.-|..+|..+-      ..+..+=.+-++-+...+.++-+++.|+.||-.|=+- ++.+.+
T Consensus       109 --SIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q  180 (968)
T KOG1060|consen  109 --SINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ  180 (968)
T ss_pred             --eHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH
Confidence              4667778889999999988888887662      2222222223333444567889999999999888654 444444


Q ss_pred             HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          523 AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       523 lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      +     +..+-.+|.+.++.++-.|+.+...+|-+  .-..|  ++-...+..++-.-+...+-.....|..-|+
T Consensus       181 L-----~e~I~~LLaD~splVvgsAv~AF~evCPe--rldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  181 L-----EEVIKKLLADRSPLVVGSAVMAFEEVCPE--RLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             H-----HHHHHHHhcCCCCcchhHHHHHHHHhchh--HHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            3     34556677888899999999988888743  22222  2456677777776666667777777666554

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=94.63  E-value=0.81  Score=46.68  Aligned_cols=221  Identities=17%  Similarity=0.092  Sum_probs=142.0

Q ss_pred             CCHHHHHHHHHHHHHhhccCchhHHHHH-hcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHHHh-cCChHH
Q 040749          374 SKLEVQKEAVRKIRLLSKENPENRILIA-DCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLIAQ-QGAIPA  449 (643)
Q Consensus       374 ~~~~~~~~A~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i~~-~g~i~~  449 (643)
                      -++-.+.-|+.++.++. -.++.|..+- +...-..++.+++..  +.++|.+.+-+++-|+.++.....|-. -..|..
T Consensus       161 i~~lTrlfav~cl~~l~-~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~d  239 (432)
T COG5231         161 IDFLTRLFAVSCLSNLE-FDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLIND  239 (432)
T ss_pred             HHHHHHHHHHHHHhhhh-hhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            34445667888888887 4566666553 344555677777753  678999999999999887766544332 245667


Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHhccccccchhhhh---ccCChHHHHHHhccC---ChhhHHHHHH--------------
Q 040749          450 IIEILQSGS-TEARENSAAALFSLSMLDENKITIG---LSDGIPPLVDLLQNG---TIRGKKDAVT--------------  508 (643)
Q Consensus       450 Lv~lL~~~~-~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~~Lv~lL~~~---~~~~~~~A~~--------------  508 (643)
                      ++.+.+... ..+-..+++++.++.. ...|..|.   -.|-+.+.|++|..+   +.+...+--.              
T Consensus       240 li~iVk~~~keKV~Rlc~~Iv~n~~d-K~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~  318 (432)
T COG5231         240 LIAIVKERAKEKVLRLCCGIVANVLD-KSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCI  318 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhH
Confidence            777776543 4556677788888765 23333343   356566677776543   2222211100              


Q ss_pred             ---HHHHh-----ccC---------CcchHHHHH--cCChHHHHHHhccCChh-hHHHHHHHHHHHhC-ChhhHHHhhcC
Q 040749          509 ---ALFNL-----SLN---------QANKARAID--AGIVLPLMNLLEERNLG-MVDEALSILLLLAT-HPEGRHKIGQL  567 (643)
Q Consensus       509 ---aL~nL-----s~~---------~~n~~~lv~--~G~v~~Lv~lL~~~~~~-~~~~Al~~L~~La~-~~~~~~~i~~~  567 (643)
                         -+..|     +-.         +.|...+.+  -.++..|.+++....+. ...-|+.=+..+.. .|+++..+...
T Consensus       319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky  398 (432)
T COG5231         319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKY  398 (432)
T ss_pred             HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence               01111     101         123344444  34678888888875555 45556666666654 79999999999


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          568 SFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      |+=..+++++.+.++++|-.|+.++..+.
T Consensus       399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         399 GVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999986654

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=94.57  E-value=0.36  Score=55.59  Aligned_cols=264  Identities=14%  Similarity=0.105  Sum_probs=144.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH-HHHHh
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK-RLIAQ  443 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k-~~i~~  443 (643)
                      .|++.+.+.|.+.|.-|+..|..-...+.-+-+.=.+...+..|+++|+..+.++|..|+.+|+-|+.. .+.+ ..+  
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~--   86 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETI--   86 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHH--
Confidence            788899999999999998877754432221111112345788999999999999999999999988831 1111 111  


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccC------ChhhHHHHHHHHHHhcc-
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNG------TIRGKKDAVTALFNLSL-  515 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~------~~~~~~~A~~aL~nLs~-  515 (643)
                         ++.|..-+-+|....+..+.-.|. ..+..+..-.....+.+++.+..-|..+      ...++-.++-.+.-+-. 
T Consensus        87 ---ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr  163 (1233)
T KOG1824|consen   87 ---VENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSR  163 (1233)
T ss_pred             ---HHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHh
Confidence               222332222333333333322222 1222221111122234444444444332      23355555555543321 


Q ss_pred             CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHH
Q 040749          516 NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLE  594 (643)
Q Consensus       516 ~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~  594 (643)
                      ..+--.. ...+....++.-+.++...++..|+.+|..|+..-. +...  .+.+..|++-|.. .++....--+.+|..
T Consensus       164 ~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly--~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~  239 (1233)
T KOG1824|consen  164 FGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLY--VELIEHLLKGLSNRTQMSATRTYIQCLAA  239 (1233)
T ss_pred             hcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHH--HHHHHHHHhccCCCCchHHHHHHHHHHHH
Confidence            1111111 234556667777777778889999999999987421 1111  1233444443332 233444445566667


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHh---hcCCHHHHHHHHHHHHHHHh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLT---EGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +|+..+..... --..++|.+..+.   ...+++.+++....+..+-+
T Consensus       240 i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  240 ICRQAGHRFGS-HLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR  286 (1233)
T ss_pred             HHHHhcchhhc-ccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence            77654321111 1134677777777   66788999999888876543

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.53  E-value=0.016  Score=61.35  Aligned_cols=51  Identities=20%  Similarity=0.459  Sum_probs=38.9

Q ss_pred             CCCccccccCccccc-----------------CceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          271 IPHEFLCPITLEIMR-----------------DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~-----------------dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      +...--|+||+....                 +=..+||.|.|.+.|+++|.+.-.-.||.|+.+++.
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            445567999986432                 112359999999999999998555579999998864

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.42  E-value=1.5  Score=41.86  Aligned_cols=92  Identities=18%  Similarity=0.229  Sum_probs=72.2

Q ss_pred             ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCCh-HHHHHHh
Q 040749          417 DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGI-PPLVDLL  495 (643)
Q Consensus       417 d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i-~~Lv~lL  495 (643)
                      |+.++.+++.+++.|+..-++   ++ ...++.+...|+++++.+|..|+.+|..|-..+..|.    .|-+ ..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~----k~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKV----KGQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceee----hhhhhHHHHHHH
Confidence            578899999999999863322   21 2357889999999999999999999999976544332    2433 7788888


Q ss_pred             ccCChhhHHHHHHHHHHhccC
Q 040749          496 QNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       496 ~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      .+.++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            899999999999999988765

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.33  E-value=2.1  Score=44.66  Aligned_cols=189  Identities=15%  Similarity=0.136  Sum_probs=109.6

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHhccC---CcchH
Q 040749          447 IPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN---QANKA  521 (643)
Q Consensus       447 i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---~~n~~  521 (643)
                      +...+..+.......|+.+...+..+.........+..  ...+..+...++.|+.+-+..|+.++.-|+..   .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~  124 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE  124 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence            44445555666688899999888887654433333332  34577888888888776677777777777654   23344


Q ss_pred             HHHHcCChHHHHHHhccCCh--hhHHHHHHHHHHH---hCC-hhhHHHhhcCCcHHHHHHH--Hhc-C---------ChH
Q 040749          522 RAIDAGIVLPLMNLLEERNL--GMVDEALSILLLL---ATH-PEGRHKIGQLSFIETLVEY--IRE-G---------TPK  583 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~--~~~~~Al~~L~~L---a~~-~~~~~~i~~~g~i~~Lv~l--L~~-~---------s~~  583 (643)
                      .+.+ .+.|.|...+.+.+.  ..+..++.+|+.+   +.. .+......  ..+..+...  +.. +         ++.
T Consensus       125 ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~  201 (309)
T PF05004_consen  125 EIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAA  201 (309)
T ss_pred             HHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccH
Confidence            4444 467888888877443  3334455455544   332 22222111  122222111  111 1         134


Q ss_pred             HHHHHHHHHHHHhcCCHH-HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          584 NKECATAVLLELGANNSS-FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       584 ~~e~A~~~L~~L~~~~~~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +...|+..-.-|...-+. ...... ...++.|..++.+.+..+|-.|-..|..|.+
T Consensus       202 l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  202 LVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            555555554444433332 233222 4469999999999999999999888887743

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.27  E-value=0.011  Score=57.82  Aligned_cols=56  Identities=14%  Similarity=0.355  Sum_probs=44.5

Q ss_pred             CCccccccCcccccCce----------ecCCCCccchHHHHHHHhcC-CCCCCCcCcccccCCCCcc
Q 040749          272 PHEFLCPITLEIMRDPV----------IIASGQTFERESVQKWFDSN-HRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv----------~~~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~~l~pn  327 (643)
                      .++-.|.+|+.-+.+.+          .++|+|.|.-.||..|+--| ..|||-|++..+...+..|
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            35677999998776554          57999999999999999854 3589999988876655554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.18  E-value=0.74  Score=50.19  Aligned_cols=152  Identities=19%  Similarity=0.177  Sum_probs=114.9

Q ss_pred             ChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCC----hhhHHHHHHHHHHHhCChhhHH
Q 040749          487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN----LGMVDEALSILLLLATHPEGRH  562 (643)
Q Consensus       487 ~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~~~~~~  562 (643)
                      ....+..++.+|+...+..|+.-|..++........++...++..|..++.+++    ..+...++.++..+-.+.-..=
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            456778888899998998899999999999999999999999999999998743    3455555666655544321111


Q ss_pred             HhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          563 KIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       563 ~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ..+...+|.....++.-  -...+-..|+.+|-++..++......+.++--++.|+..++.++.+++.+|..++..+-
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            11223455555555532  23456788999999999888888888888989999999999999999999999998664

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.17  E-value=0.38  Score=54.63  Aligned_cols=194  Identities=15%  Similarity=0.123  Sum_probs=135.8

Q ss_pred             CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccCC-hhhHHHHHHHHH
Q 040749          434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNGT-IRGKKDAVTALF  511 (643)
Q Consensus       434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~  511 (643)
                      ...-+...+..|+...|+++...+..+++-.+..+|. .++...+     .....++++.+.+.+.. .-....++.++.
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~alt  567 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEALEALT  567 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhh
Confidence            4444566678999999999999888888888888887 2221100     01456777777765432 334578899999


Q ss_pred             HhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHh-hc-CCcHHHHHHHHhcCChHHHHHH
Q 040749          512 NLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKI-GQ-LSFIETLVEYIREGTPKNKECA  588 (643)
Q Consensus       512 nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i-~~-~g~i~~Lv~lL~~~s~~~~e~A  588 (643)
                      ||++.++ .+.++++.-.++.+-.++.+.++..+..++..+.||..++..-+.. ++ ...++.....+..........+
T Consensus       568 nLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~  647 (748)
T KOG4151|consen  568 NLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAG  647 (748)
T ss_pred             cccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhc
Confidence            9987544 5777888877887777787888899999999999999887665544 33 3456666666665555666667


Q ss_pred             HHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749          589 TAVLLELGANNSSFILAAL-QYGVYEHLIQLTEGGTSRAQRKANA  632 (643)
Q Consensus       589 ~~~L~~L~~~~~~~~~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~  632 (643)
                      +.++..+......++..+. -......+..++.++++.+|..-..
T Consensus       648 a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~  692 (748)
T KOG4151|consen  648 AGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLV  692 (748)
T ss_pred             cccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhh
Confidence            7777767666655555333 2567788888888888888755443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.16  E-value=0.25  Score=54.26  Aligned_cols=149  Identities=15%  Similarity=0.173  Sum_probs=98.3

Q ss_pred             cHHHHHhCCCCChHHHHHHHHHHHHhcCCcch---HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749          406 IPPLVQLLPYPDSKILEHAVTAVLNLSIDESN---KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI  482 (643)
Q Consensus       406 i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~---k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i  482 (643)
                      |..++.+|+++.+.++.+|+.....|+.--.+   -..+...|.|  |.+-|....+++.-....+++.+.+....+..-
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            34456788899999999999988888752211   1222233322  445555667888777777777765443332211


Q ss_pred             -hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          483 -GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       483 -~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                       --.|.+|.|..+|++....+..+....+..++.+.+...-..+ -.+--.|+++|.+.+.+++..|...+..++.
T Consensus       684 pPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         684 PPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             CchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence             1268999999999999888888888888888865554221111 1123447777877788888888888887764

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=94.06  E-value=0.63  Score=46.55  Aligned_cols=135  Identities=18%  Similarity=0.146  Sum_probs=93.5

Q ss_pred             HHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccC-----ChhhHHHHHHHHHHHhC--ChhhHHHhhcCCcHHHHHHH
Q 040749          504 KDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER-----NLGMVDEALSILLLLAT--HPEGRHKIGQLSFIETLVEY  576 (643)
Q Consensus       504 ~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~-----~~~~~~~Al~~L~~La~--~~~~~~~i~~~g~i~~Lv~l  576 (643)
                      -+|+..+..++++++.|..++++.+.--|..+|...     -+.++-.++++++.|..  +++....+.+.+.+|..++.
T Consensus        68 cnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~  147 (262)
T PF04078_consen   68 CNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRI  147 (262)
T ss_dssp             HHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHH
Confidence            456667778899999999999999888888888652     24567778999999987  45566677889999999999


Q ss_pred             HhcCChHHHHHHHHHHHHHhcCCH---------HHHHHHHHCCcHHHHH-HHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          577 IREGTPKNKECATAVLLELGANNS---------SFILAALQYGVYEHLI-QLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       577 L~~~s~~~~e~A~~~L~~L~~~~~---------~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      |..|+.-.|..|.-++..+-..+.         +....+  ..++..++ .+....++|.-+...++-..|++.
T Consensus       148 me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av--~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  148 MEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAV--AMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHH--HHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHH--HHHHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            999999999999999988765432         221111  22344444 345566777777766666665543

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.92  E-value=0.034  Score=58.06  Aligned_cols=50  Identities=20%  Similarity=0.460  Sum_probs=41.1

Q ss_pred             CCccccccCcccccCce-----e---cCCCCccchHHHHHHHhcC------CCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPV-----I---IASGQTFERESVQKWFDSN------HRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv-----~---~~cg~ty~r~~I~~~~~~~------~~~cP~~~~~l~~  321 (643)
                      -.+..|-||++...+++     .   .+|-|+||..||.+|-...      .+.||.|+.+...
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~  222 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSF  222 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccc
Confidence            56789999999999888     3   4699999999999999633      3679999877653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=93.87  E-value=2.9  Score=41.84  Aligned_cols=197  Identities=20%  Similarity=0.251  Sum_probs=123.2

Q ss_pred             hHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC---
Q 040749          360 QKEEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID---  434 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---  434 (643)
                      +...++.++..|..  ..+-++.+|..+|..+.  .+         +..+.|-++.+.+...+++....++..+-.-   
T Consensus        65 ~~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~---------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~  133 (289)
T KOG0567|consen   65 DEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DP---------ESLEILTKYIKDPCKEVRETCELAIKRLEWKDII  133 (289)
T ss_pred             cchhhHHHHHHhcccccchHHHHHHHHHHHhhc--ch---------hhHHHHHHHhcCCccccchHHHHHHHHHHHhhcc
Confidence            34678899988874  45667889999998876  22         2456666666555556666554555443210   


Q ss_pred             c--chHHHH--------HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhH
Q 040749          435 E--SNKRLI--------AQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGK  503 (643)
Q Consensus       435 ~--~~k~~i--------~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~  503 (643)
                      +  .+....        ...+-+..+-..|... .+....+  .++|.|-       .++...+|.+|++-+..++.-.+
T Consensus       134 ~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry--~amF~LR-------n~g~EeaI~al~~~l~~~Salfr  204 (289)
T KOG0567|consen  134 DKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERY--RAMFYLR-------NIGTEEAINALIDGLADDSALFR  204 (289)
T ss_pred             ccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHH--hhhhHhh-------ccCcHHHHHHHHHhcccchHHHH
Confidence            0  000000        0112233333333322 2222222  3344441       23445678888888887787788


Q ss_pred             HHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC
Q 040749          504 KDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT  581 (643)
Q Consensus       504 ~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s  581 (643)
                      ..++.++..|-          ..-+||.|.+.|.+  ..+-++.+|+.+|..++.          ..++..|.+.+.+..
T Consensus       205 hEvAfVfGQl~----------s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~----------e~~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  205 HEVAFVFGQLQ----------SPAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD----------EDCVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHHHhhcc----------chhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC----------HHHHHHHHHHcCCcH
Confidence            88888887664          23468888888876  566778899999988765          357888889998888


Q ss_pred             hHHHHHHHHHHHHHh
Q 040749          582 PKNKECATAVLLELG  596 (643)
Q Consensus       582 ~~~~e~A~~~L~~L~  596 (643)
                      +-+++.+..+|..+-
T Consensus       265 ~vv~esc~valdm~e  279 (289)
T KOG0567|consen  265 RVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888888888876553

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.83  E-value=0.9  Score=45.65  Aligned_cols=94  Identities=15%  Similarity=0.166  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh
Q 040749          543 MVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE  620 (643)
Q Consensus       543 ~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~  620 (643)
                      ....|+.+|.-++- ++..+..+.+...+..++.+|.. ..+.++..++.+|..+...++.+...+.+.+++..+..+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            35567788888776 89999999999999999999954 56889999999999999999999999999999999999998


Q ss_pred             cC--CHHHHHHHHHHHHH
Q 040749          621 GG--TSRAQRKANALLQL  636 (643)
Q Consensus       621 ~g--~~~~k~~A~~lL~~  636 (643)
                      +.  +..+|-|....|..
T Consensus       187 ~~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYF  204 (257)
T ss_pred             cccccHHHhHHHHHHHHH
Confidence            76  66788888777653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.74  E-value=0.81  Score=48.18  Aligned_cols=196  Identities=14%  Similarity=0.136  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHH-----HHHhc--CCcHHHHHhCCCCChHHHHHHHHHHHHhcC
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-----LIADC--GAIPPLVQLLPYPDSKILEHAVTAVLNLSI  433 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~-----~i~~~--g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~  433 (643)
                      .+.+..|+..|..-+.+.+..++....++.+.....+.     .+..+  ..+..|+.-..  ++++--.+...|.....
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHHHHh
Confidence            35678899999999999999999988888877665543     33322  23444444433  56666778888888888


Q ss_pred             CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhc---cCChHHHHHHhccCChhhHHHHHHH
Q 040749          434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGL---SDGIPPLVDLLQNGTIRGKKDAVTA  509 (643)
Q Consensus       434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~a  509 (643)
                      ++.--..+.....+..+.+....++-++...|..++..|-..+ ..-.....   ...+.....+|.+++--.+..++..
T Consensus       153 ~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkL  232 (335)
T PF08569_consen  153 HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKL  232 (335)
T ss_dssp             SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHH
T ss_pred             hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHH
Confidence            8877777778888888999999999999999999988865432 22222222   4567788889999999999999999


Q ss_pred             HHHhccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749          510 LFNLSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP  558 (643)
Q Consensus       510 L~nLs~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  558 (643)
                      |..|-....|...|..    ..-+..++.+|.+.+..++-+|..++.....+|
T Consensus       233 L~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  233 LGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            9999999998766543    556778899999999999999999999887765

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.72  E-value=0.24  Score=39.59  Aligned_cols=66  Identities=18%  Similarity=0.224  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCC
Q 040749          503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLS  568 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g  568 (643)
                      .+.|++|+.|+++.+.....+-+.++++.++++... +...++--|..+|..++.+.++.+.+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            578999999999988888877788999999999875 667889999999999999999998877655

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=93.66  E-value=0.9  Score=49.57  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=111.8

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh----hhHHHHHHHHHHhccCCcchH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI----RGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~----~~~~~A~~aL~nLs~~~~n~~  521 (643)
                      ....+.+++.+|+...+..|...|.++|.+......+.+..++..|..++.+|..    ......++++..|-.+.---.
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            3456778899999989988999999999988888888888889999999998764    344455555555543332222


Q ss_pred             HHHHcCChHHHHHHhc--cCChhhHHHHHHHHHHHhCChh-hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          522 RAIDAGIVLPLMNLLE--ERNLGMVDEALSILLLLATHPE-GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~-~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      ..+...+|.....+.+  ..+..+...|+..|.++..+.. .+..+.+.--+..|+..+..++...+.+|.+.+..+...
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~  243 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK  243 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence            2233233333333332  2456678889999999987655 566677777799999999999989999999988888755


Q ss_pred             CH
Q 040749          599 NS  600 (643)
Q Consensus       599 ~~  600 (643)
                      .+
T Consensus       244 a~  245 (713)
T KOG2999|consen  244 AP  245 (713)
T ss_pred             CC
Confidence            43

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=93.56  E-value=3.4  Score=45.52  Aligned_cols=190  Identities=14%  Similarity=-0.008  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHhcC-------CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhc
Q 040749          360 QKEEIVSLVEQLSS-------SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS  432 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs  432 (643)
                      -.+.+|.|+.+|..       ++|.....|..+|...+.   -..+.|.+. ++..+-+-+.+++..-++.|+.+++.+-
T Consensus       319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm  394 (858)
T COG5215         319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVM  394 (858)
T ss_pred             HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence            45678999999975       356667777777777762   222334433 3344445567778888899999999887


Q ss_pred             CCcc--hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc---CChhhHHHHH
Q 040749          433 IDES--NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN---GTIRGKKDAV  507 (643)
Q Consensus       433 ~~~~--~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~---~~~~~~~~A~  507 (643)
                      ..+.  ....+ -..++|.|..........++..++|++..++..  ....|...|.++..+.-..-   +.+....+..
T Consensus       395 ~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~--va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncs  471 (858)
T COG5215         395 HGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH--VAMIISPCGHLVLEVSASLIGLMDCPFRSINCS  471 (858)
T ss_pred             cCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH--HHHhcCccccccHHHHHHHhhhhccchHHhhhH
Confidence            5432  23333 456899999998877788999999999988642  22233345667666665433   2566777888


Q ss_pred             HHHHHhccCCcchH----HHHH---cCChHHHHHHhc--cCChhhHHHHHHHHHHHhC
Q 040749          508 TALFNLSLNQANKA----RAID---AGIVLPLMNLLE--ERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       508 ~aL~nLs~~~~n~~----~lv~---~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~  556 (643)
                      ++..||..+-....    .++.   ..++..|++--.  .++...+..+..+|..|..
T Consensus       472 w~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~  529 (858)
T COG5215         472 WRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLIL  529 (858)
T ss_pred             HHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHh
Confidence            88888874322111    1111   122333333321  2445566666666666644

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.38  E-value=1.5  Score=51.99  Aligned_cols=218  Identities=19%  Similarity=0.209  Sum_probs=128.5

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-c-chHHHHHhcCChH
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIADC--GAIPPLVQLLPYPDSKILEHAVTAVLNLSID-E-SNKRLIAQQGAIP  448 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~-~~k~~i~~~g~i~  448 (643)
                      +.+..+|.++-+.|..+... +.......+.  ..-..|..-+.+.+..++...+.+|..|-.. + +....+  ...|+
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i--~k~I~  741 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI--PKLIP  741 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH--HHHHH
Confidence            45788999999999998854 3222222211  1122333344444556666666666655442 2 333333  23455


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhccc----cccchhhhhccCChHHHHHHhccC--ChhhHHHH--HHHHHHhccCCcch
Q 040749          449 AIIEILQSGSTEARENSAAALFSLSM----LDENKITIGLSDGIPPLVDLLQNG--TIRGKKDA--VTALFNLSLNQANK  520 (643)
Q Consensus       449 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~----~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A--~~aL~nLs~~~~n~  520 (643)
                      -++-.++..+...+++|-++|..+..    .++....  ....|...+..+..|  .......|  +.++..+.....+ 
T Consensus       742 EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~-  818 (1176)
T KOG1248|consen  742 EVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP--ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN-  818 (1176)
T ss_pred             HHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc--hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc-
Confidence            55555577789999999999998873    1111111  122556666666544  22222222  4444444432222 


Q ss_pred             HHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          521 ARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       521 ~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                        +++    .+++..+...|.+.++.++..|++.+..++. .++..-.-.....++.+..++++.+...+...-..|-.|
T Consensus       819 --~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekL  896 (1176)
T KOG1248|consen  819 --ILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKL  896 (1176)
T ss_pred             --cccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence              222    3344555556677899999999999999876 343333333345788888888888888888888888888


Q ss_pred             hcC
Q 040749          596 GAN  598 (643)
Q Consensus       596 ~~~  598 (643)
                      ++.
T Consensus       897 irk  899 (1176)
T KOG1248|consen  897 IRK  899 (1176)
T ss_pred             HHH
Confidence            864

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=93.32  E-value=1.8  Score=45.20  Aligned_cols=184  Identities=18%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             hCCCCChHHHHHHHHHHHHhcCCcchHHHHH--hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc---ccchhhhhccC
Q 040749          412 LLPYPDSKILEHAVTAVLNLSIDESNKRLIA--QQGAIPAIIEILQSGSTEARENSAAALFSLSML---DENKITIGLSD  486 (643)
Q Consensus       412 lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~---~~~k~~i~~~g  486 (643)
                      .+.......|+.++..+.++.........+.  ..-.++.+.+.++.|..+-+..|+.++.-|+..   ......+. ..
T Consensus        51 ~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~-~~  129 (309)
T PF05004_consen   51 LLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF-EE  129 (309)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH-HH
Confidence            3444457788888888877764333223222  233577888888888766566676666666543   12222222 35


Q ss_pred             ChHHHHHHhccCCh--hhHHHHHHHHHHhccCCcc-hHHHHH-cCChHHHHH--Hhcc----------CChhhHHHHHHH
Q 040749          487 GIPPLVDLLQNGTI--RGKKDAVTALFNLSLNQAN-KARAID-AGIVLPLMN--LLEE----------RNLGMVDEALSI  550 (643)
Q Consensus       487 ~i~~Lv~lL~~~~~--~~~~~A~~aL~nLs~~~~n-~~~lv~-~G~v~~Lv~--lL~~----------~~~~~~~~Al~~  550 (643)
                      ..|.|...+.+++.  ..+..++.+|.-++....+ -..+.+ ...+..+..  ....          +++.+...|+..
T Consensus       130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            67888888877653  4444555566655432111 111110 011111111  1111          124577777776


Q ss_pred             HHHHhCChhh--HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          551 LLLLATHPEG--RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       551 L~~La~~~~~--~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      -.-|...-+.  ..... ...++.|..+|.+.+..+|..|..+|.-|..
T Consensus       210 W~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            6666653322  22222 3579999999999999999998888876653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.31  E-value=0.46  Score=40.44  Aligned_cols=70  Identities=13%  Similarity=0.231  Sum_probs=54.9

Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ..+++++..+.+.+.++|..|+.+|.+++......... .=..++..|.+++.+.++++|..|.-+-+.|.
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~-~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~llk   96 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILP-YFNEIFDALCKLSADPDENVRSAAELLDRLLK   96 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhc
Confidence            57888888999999999999999999998754332211 12458899999999999999988876666654

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.22  E-value=0.088  Score=38.81  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=24.0

Q ss_pred             cccccCcccccCceec-CCCCc--cchHH-HHHHHhcCCCCCCCcCcc
Q 040749          275 FLCPITLEIMRDPVII-ASGQT--FERES-VQKWFDSNHRTCPKTRQT  318 (643)
Q Consensus       275 f~CpIc~~~m~dPv~~-~cg~t--y~r~~-I~~~~~~~~~~cP~~~~~  318 (643)
                      +.|||+...|.-|+-- .|.|.  |+... |+.....+...||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            6899999999999975 68885  66643 333333566789999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.16  E-value=4.8  Score=45.45  Aligned_cols=237  Identities=14%  Similarity=0.125  Sum_probs=139.0

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC--cchHHHHHhcCChHHHHHHh
Q 040749          377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--ESNKRLIAQQGAIPAIIEIL  454 (643)
Q Consensus       377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--~~~k~~i~~~g~i~~Lv~lL  454 (643)
                      -++.+|+-++-.|.+.+|+.   +-..+.+..++.+|...+-.+...+...+--|++.  +..+..+-  -++..|.++.
T Consensus       163 ~vkqkaALclL~L~r~spDl---~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~--~avs~L~riv  237 (938)
T KOG1077|consen  163 YVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP--LAVSRLSRIV  237 (938)
T ss_pred             HHHHHHHHHHHHHHhcCccc---cChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH--HHHHHHHHHH
Confidence            45566666666676666642   22234677888899887776666666666666663  23343331  1122222221


Q ss_pred             c-------------CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhH-HHHHH----HHHHhc
Q 040749          455 Q-------------SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGK-KDAVT----ALFNLS  514 (643)
Q Consensus       455 ~-------------~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~-~~A~~----aL~nLs  514 (643)
                      .             -+.|......+.+|.++-..++.-....--.++..++...+..  +..++ .+|-.    -.-+|.
T Consensus       238 ~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~  317 (938)
T KOG1077|consen  238 VVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLA  317 (938)
T ss_pred             hhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHH
Confidence            1             1346778888888887743333222111123344444444321  11111 12211    122343


Q ss_pred             c-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHHHHHHH
Q 040749          515 L-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKECATAVL  592 (643)
Q Consensus       515 ~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~A~~~L  592 (643)
                      . .++....+.+  ++..|-++|.+.+..++-.|+..++.|++......++-..  ...++..|+ ..+-.+|..|+..|
T Consensus       318 ~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h--~d~Ii~sLkterDvSirrravDLL  393 (938)
T KOG1077|consen  318 IHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLL  393 (938)
T ss_pred             HHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHH
Confidence            3 3333333433  4778899999988999999999999999987666666554  777888888 56788999999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHH
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRK  629 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~  629 (643)
                      ..+|..+  +...     ++.-|++.+.+-+..+|+.
T Consensus       394 Y~mcD~~--Nak~-----IV~elLqYL~tAd~siree  423 (938)
T KOG1077|consen  394 YAMCDVS--NAKQ-----IVAELLQYLETADYSIREE  423 (938)
T ss_pred             HHHhchh--hHHH-----HHHHHHHHHhhcchHHHHH
Confidence            9999654  3333     3444555665565555543

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=93.01  E-value=0.086  Score=51.84  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             ccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCCcCcc
Q 040749          274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPKTRQT  318 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~~~~~  318 (643)
                      +++|||+......|++- .|||.|+|..|+..+.. ....||.-+..
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            58999999999999985 79999999999999874 23469985544

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=92.80  E-value=0.32  Score=46.58  Aligned_cols=77  Identities=17%  Similarity=0.208  Sum_probs=63.1

Q ss_pred             hHHHHHcCChHHHHHHhcc---------CChhhHHHHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHH
Q 040749          520 KARAIDAGIVLPLMNLLEE---------RNLGMVDEALSILLLLATHPEGRHKIGQ-LSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~---------~~~~~~~~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      ...+++.|++..|+.+|..         .+......++.+|..|..+..|...+.. .+++..|+..|.+.++.++..|+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            3457788888888888754         2335678899999999999999998887 58899999999999999999999


Q ss_pred             HHHHHHh
Q 040749          590 AVLLELG  596 (643)
Q Consensus       590 ~~L~~L~  596 (643)
                      .+|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999988

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.75  E-value=0.08  Score=51.58  Aligned_cols=52  Identities=15%  Similarity=0.282  Sum_probs=42.4

Q ss_pred             CCccccccCcccccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          272 PHEFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      ...|.|||++-.|.+-.    +.+|||.|.-+.+++.-   ..+|+.|++.....+.++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            45699999999998763    45899999999888754   347999999999887654

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=92.65  E-value=0.47  Score=40.37  Aligned_cols=90  Identities=13%  Similarity=0.184  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC
Q 040749          503 KKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG  580 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~  580 (643)
                      ++-++.+|...+..-.....-.-.-++++++..+.+++..++..|+.+|.|++...  +..+..  ..++..|.+++.+.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~--~~~~l~~f~~IF~~L~kl~~D~   80 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVA--RGEILPYFNEIFDALCKLSADP   80 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHcCC
Confidence            44555566655543222222222457899999999999999999999999998643  333333  35678888888888


Q ss_pred             ChHHHHHHHHHHHHH
Q 040749          581 TPKNKECATAVLLEL  595 (643)
Q Consensus       581 s~~~~e~A~~~L~~L  595 (643)
                      ++.+|..| ..|.++
T Consensus        81 d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   81 DENVRSAA-ELLDRL   94 (97)
T ss_pred             chhHHHHH-HHHHHH
Confidence            88877666 555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.64  E-value=2.8  Score=50.03  Aligned_cols=252  Identities=15%  Similarity=0.115  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC---C-cchHHHHHhcCChHHH
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI---D-ESNKRLIAQQGAIPAI  450 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~---~-~~~k~~i~~~g~i~~L  450 (643)
                      ..+.+..|+.-|..++..-.+   ...-.-++|.++.++.....++|..|+.+|..+-.   + +..-..|.-.-.+|.|
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~d---e~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L  512 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDD---EVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHL  512 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcch---HHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhh
Confidence            456788999999988853221   11112378999999999999999999998887643   1 2222334344578888


Q ss_pred             HHHhcCC-CHHHHHHHHHHHHhccc------------------cccchhhhhc----------cCCh-HHHHHHhccCCh
Q 040749          451 IEILQSG-STEARENSAAALFSLSM------------------LDENKITIGL----------SDGI-PPLVDLLQNGTI  500 (643)
Q Consensus       451 v~lL~~~-~~e~~~~Aa~~L~~Ls~------------------~~~~k~~i~~----------~g~i-~~Lv~lL~~~~~  500 (643)
                      -.++.+. ...+|..=|..|..|+.                  ++.+-....+          ...+ ..++.||.+.++
T Consensus       513 ~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~  592 (1431)
T KOG1240|consen  513 NHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPP  592 (1431)
T ss_pred             HhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCch
Confidence            8888763 33333333333333321                  1111100000          0112 223334444445


Q ss_pred             hhHHHHHHHHHHhccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHH
Q 040749          501 RGKKDAVTALFNLSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEY  576 (643)
Q Consensus       501 ~~~~~A~~aL~nLs~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~l  576 (643)
                      -+|..-+..|.-||.      .+.+    .=+++.|+.+|++.+..++..-...+.-+|..-.-|  -++...+|.|.+-
T Consensus       593 ~Vkr~Lle~i~~LC~------FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~  664 (1431)
T KOG1240|consen  593 IVKRALLESIIPLCV------FFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQG  664 (1431)
T ss_pred             HHHHHHHHHHHHHHH------HhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHh
Confidence            566555555665653      1222    124667777787776666555444444443322111  1245678888888


Q ss_pred             HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          577 IREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       577 L~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      |.++.+.+-..|+.+|..||..+-=....+  ..+++...-++-+.+.=+|+.+..++....+
T Consensus       665 ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v--~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  665 LTDGEEAVIVSALGSLSILIKLGLLRKPAV--KDILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             ccCcchhhHHHHHHHHHHHHHhcccchHHH--HHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            888889999999999999997643111111  1234555566777888889888888776543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.56  E-value=3.2  Score=44.72  Aligned_cols=225  Identities=14%  Similarity=0.134  Sum_probs=132.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhccCc---hhHHHHHhcCCcHHHHHhCCCC-------ChHHHHHHHHHHHHhcCCcc
Q 040749          367 LVEQLSSSKLEVQKEAVRKIRLLSKENP---ENRILIADCGAIPPLVQLLPYP-------DSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------d~~~~~~a~~~L~nLs~~~~  436 (643)
                      +..++...+.+.|..|+--+..++|.++   .+|..+.++-+.+.+-++|.+.       |...+.-+++.|.-.+.+++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            5556666677778888888888887654   5688899998999999999764       23345667778887887765


Q ss_pred             h--HHHHHhcCChHHHHHHhcCC-CHH------HHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHH
Q 040749          437 N--KRLIAQQGAIPAIIEILQSG-STE------ARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDA  506 (643)
Q Consensus       437 ~--k~~i~~~g~i~~Lv~lL~~~-~~e------~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A  506 (643)
                      -  -..|+  ..||.|..++..+ +++      ..+.+-.+|...+..+.....+...|+++.+.++-.-.+- --...|
T Consensus        96 lAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            4  33443  4689999999754 222      5677888999999888888888899999999876432111 111222


Q ss_pred             HHHHHHh----ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-------hhhHHHhhcCCcHHHHHH
Q 040749          507 VTALFNL----SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-------PEGRHKIGQLSFIETLVE  575 (643)
Q Consensus       507 ~~aL~nL----s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-------~~~~~~i~~~g~i~~Lv~  575 (643)
                      +..+.-+    -..++...++...  +..+..=+...+....-+.+.+|..+-..       +.-+..++....-.-++.
T Consensus       174 l~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~  251 (698)
T KOG2611|consen  174 LKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVA  251 (698)
T ss_pred             HHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHH
Confidence            2222211    1223333333221  22232222223445555667777644221       112222222222344556


Q ss_pred             HHhcC-ChHHHHHHHHHHHHH
Q 040749          576 YIREG-TPKNKECATAVLLEL  595 (643)
Q Consensus       576 lL~~~-s~~~~e~A~~~L~~L  595 (643)
                      +|.+. +|..|..|+....++
T Consensus       252 IL~~kv~p~qr~pAL~Laa~~  272 (698)
T KOG2611|consen  252 ILQNKVAPSQRLPALILAANM  272 (698)
T ss_pred             HHhcccCchhcChHHHHHHHH
Confidence            66653 456666665554444

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.56  E-value=0.084  Score=55.09  Aligned_cols=47  Identities=19%  Similarity=0.537  Sum_probs=39.4

Q ss_pred             CCCccccccCcccccC---ceecCCCCccchHHHHHHHhcCC--CCCCCcCc
Q 040749          271 IPHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNH--RTCPKTRQ  317 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~--~~cP~~~~  317 (643)
                      ...-|.|||..+-=.|   |+.++|||..++..|.+..+.|.  +.||-|-.
T Consensus       331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            3445899999987763   89999999999999999998777  67999943

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=92.34  E-value=0.13  Score=40.88  Aligned_cols=45  Identities=29%  Similarity=0.558  Sum_probs=34.0

Q ss_pred             cccccCccccc----Cceec-CCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          275 FLCPITLEIMR----DPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       275 f~CpIc~~~m~----dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      -.||-|.--|.    =|+.- -|.|.|.-.||.+|++.. ..||.++++..
T Consensus        32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk-~~CPld~q~w~   81 (88)
T COG5194          32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK-GVCPLDRQTWV   81 (88)
T ss_pred             CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC-CCCCCCCceeE
Confidence            45777777663    13433 599999999999999974 47999998754

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=4.8  Score=47.23  Aligned_cols=252  Identities=17%  Similarity=0.199  Sum_probs=151.6

Q ss_pred             HHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCC----
Q 040749          383 VRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGS----  458 (643)
Q Consensus       383 ~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~----  458 (643)
                      ...|-.+.|.+.+|...+.+++++..++.++-+  .+-+...+..+.-|...+..+.   ....+-.+++.|++|-    
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflin--dehRSslLrivscLitvdpkqv---hhqelmalVdtLksgmvt~I  737 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIN--DEHRSSLLRIVSCLITVDPKQV---HHQELMALVDTLKSGMVTRI  737 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeec--hHHHHHHHHHHHHHhccCcccc---cHHHHHHHHHHHHhcceecc
Confidence            446777888999999999999999999988844  3334444555544443322211   1223456677776641    


Q ss_pred             --------HHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhcc----------CChhhHHHHHHHHHH---h--c
Q 040749          459 --------TEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQN----------GTIRGKKDAVTALFN---L--S  514 (643)
Q Consensus       459 --------~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~----------~~~~~~~~A~~aL~n---L--s  514 (643)
                              ..+......++|..- .+...+..+++.+++..|...|..          ++..+...-...|+.   +  +
T Consensus       738 sgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavc  817 (2799)
T KOG1788|consen  738 SGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVC  817 (2799)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHh
Confidence                    123344455666654 334567778888888888877642          122222222333332   2  3


Q ss_pred             cCCcchHHH-------------HHcC---------ChHHHHHHh-cc-CChhhH--HHHHHHHHHHhC------Ch----
Q 040749          515 LNQANKARA-------------IDAG---------IVLPLMNLL-EE-RNLGMV--DEALSILLLLAT------HP----  558 (643)
Q Consensus       515 ~~~~n~~~l-------------v~~G---------~v~~Lv~lL-~~-~~~~~~--~~Al~~L~~La~------~~----  558 (643)
                      .++.|+.++             .+.|         +|..|.++- .. ..+.+.  ..|+..+-.+-.      .|    
T Consensus       818 enasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqf  897 (2799)
T KOG1788|consen  818 ENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQF  897 (2799)
T ss_pred             hcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCc
Confidence            456665433             2233         222222221 11 122222  223333333311      12    


Q ss_pred             -hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh---hcCCHHHHHHHHHHH
Q 040749          559 -EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT---EGGTSRAQRKANALL  634 (643)
Q Consensus       559 -~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll---~~g~~~~k~~A~~lL  634 (643)
                       ..++.|...|++..|++.+-...|..+..-+..|-.+.+.++.+....-..|.+..|++++   .+|+...-..|..++
T Consensus       898 npdk~~iynagavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsgsspfLshalkIv  977 (2799)
T KOG1788|consen  898 NPDKQKIYNAGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHALKIV  977 (2799)
T ss_pred             CchHhhhcccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcCCchHhhccHHHH
Confidence             2356788899999999999888899999999999999999887776666788998888776   456665666777777


Q ss_pred             HHHHh
Q 040749          635 QLISK  639 (643)
Q Consensus       635 ~~L~~  639 (643)
                      .+|+-
T Consensus       978 emLga  982 (2799)
T KOG1788|consen  978 EMLGA  982 (2799)
T ss_pred             HHHhh
Confidence            76654

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.29  E-value=0.38  Score=44.92  Aligned_cols=146  Identities=17%  Similarity=0.193  Sum_probs=97.5

Q ss_pred             CChHHHHHHhcC--CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-hH
Q 040749          445 GAIPAIIEILQS--GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KA  521 (643)
Q Consensus       445 g~i~~Lv~lL~~--~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~  521 (643)
                      ..++.++..|..  .+.++|..+.-++..+-  +..+... ..-.-+.+-.++..++.+....+..++..|--.... ..
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~-~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~   79 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEF-KEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS   79 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHH-HHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHH-HHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence            345666665553  46678888888887772  3233222 112223333344555556777777777777654444 33


Q ss_pred             HH-HHcCChHHHHHHhc--cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChH-HHHHHHHHHHH
Q 040749          522 RA-IDAGIVLPLMNLLE--ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPK-NKECATAVLLE  594 (643)
Q Consensus       522 ~l-v~~G~v~~Lv~lL~--~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~-~~e~A~~~L~~  594 (643)
                      .+ ...|.++.++.+..  ..+......++.+|..=|.+...|..+.+ .+++.|-+++.. .++. .|..|+-+|..
T Consensus        80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            33 36899999999998  67888888999999988888888888776 688888888854 4455 68888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=92.27  E-value=2.7  Score=48.61  Aligned_cols=216  Identities=14%  Similarity=0.107  Sum_probs=142.7

Q ss_pred             CCChHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhh---ccCChH
Q 040749          415 YPDSKILEHAVTAVLNLSIDE-SNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIG---LSDGIP  489 (643)
Q Consensus       415 ~~d~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~~g~i~  489 (643)
                      +..+...-.+.+++...+... .+...+  ...+...+..+. +..+.++..|..+++.-+     +.+..   .++.+.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~-----~~~vl~~~~p~ild  533 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYC-----KVKVLLSLQPMILD  533 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhcc-----CceeccccchHHHH
Confidence            345555556666666554321 122211  112333344443 334567777777777665     22221   267788


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749          490 PLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHKIGQL  567 (643)
Q Consensus       490 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~i~~~  567 (643)
                      .|..+....+.++.-.-..+|...+..+.......++.+.|..+.++..  .++.+...+-.++..|+....+..-+. .
T Consensus       534 ~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~-e  612 (1005)
T KOG2274|consen  534 GLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ-E  612 (1005)
T ss_pred             HHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH-H
Confidence            8888887778888888888999888888888888888888888888754  778888888888888877554443333 3


Q ss_pred             CcHHHHHHHHhcCC----hHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh-hcCCHHHHHHHHHHHHHHH
Q 040749          568 SFIETLVEYIREGT----PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT-EGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       568 g~i~~Lv~lL~~~s----~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~L~  638 (643)
                      ..+|.++..|....    +....-|+.+|..+.++.+.-.....-.-++|++.++. .+++...-+.|..+|+.+-
T Consensus       613 ~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~I  688 (1005)
T KOG2274|consen  613 RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALI  688 (1005)
T ss_pred             HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHH
Confidence            68999999998654    45567788888878887664443333344677777765 4556667788888888664

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=92.26  E-value=5.5  Score=43.00  Aligned_cols=145  Identities=17%  Similarity=0.135  Sum_probs=98.2

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhcccccc----chhhhhccCChHHHHHHhccCC-------hhhHHHHHHHHHHhccCCc
Q 040749          450 IIEILQSGSTEARENSAAALFSLSMLDE----NKITIGLSDGIPPLVDLLQNGT-------IRGKKDAVTALFNLSLNQA  518 (643)
Q Consensus       450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~----~k~~i~~~g~i~~Lv~lL~~~~-------~~~~~~A~~aL~nLs~~~~  518 (643)
                      +..++...+.+-+-.|.-.+..+...++    +|..+.+.-+.+.+=+++.+++       .-.+..++..|...|..++
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE   95 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE   95 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence            4455555555555555555556654433    5667777777888888887542       2234556677777787776


Q ss_pred             c--hHHHHHcCChHHHHHHhcc-CChh------hHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHH
Q 040749          519 N--KARAIDAGIVLPLMNLLEE-RNLG------MVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECA  588 (643)
Q Consensus       519 n--~~~lv~~G~v~~Lv~lL~~-~~~~------~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A  588 (643)
                      -  ...|++  .||.|.+++.. .+++      +.+.+..+|..+++++.|...++..|+++.+.++-...+ ......|
T Consensus        96 lAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~ala  173 (698)
T KOG2611|consen   96 LASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALA  173 (698)
T ss_pred             hccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHH
Confidence            4  345665  58999999875 3444      889999999999999999999999999999997665332 2334445


Q ss_pred             HHHHHHHh
Q 040749          589 TAVLLELG  596 (643)
Q Consensus       589 ~~~L~~L~  596 (643)
                      +.++.-+.
T Consensus       174 l~Vlll~~  181 (698)
T KOG2611|consen  174 LKVLLLLV  181 (698)
T ss_pred             HHHHHHHH
Confidence            55554443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=92.18  E-value=2.3  Score=44.20  Aligned_cols=168  Identities=16%  Similarity=0.163  Sum_probs=107.6

Q ss_pred             CcHHHH-HhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch--h-
Q 040749          405 AIPPLV-QLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK--I-  480 (643)
Q Consensus       405 ~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k--~-  480 (643)
                      .+..|+ ..+.++++.+|+.|+.+|+-.+.-+..   ++ ...++.+...++.++.+++..|+.+++.+.......  . 
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~  102 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDS  102 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccc
Confidence            344443 677888999999999999998875442   11 224677888888889999999999999986432211  1 


Q ss_pred             ------hhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc----CChhhHHHHHHH
Q 040749          481 ------TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE----RNLGMVDEALSI  550 (643)
Q Consensus       481 ------~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~----~~~~~~~~Al~~  550 (643)
                            .......+..+...+.+.+++++..|+..+..|-.......   ...++..|+-+..+    .+..++..--..
T Consensus       103 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  103 ESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence                  11224567778888888888999999999998765443322   12334445444444    223333333344


Q ss_pred             HHHHhCChhhHHHhhcCCcHHHHHHHHhc
Q 040749          551 LLLLATHPEGRHKIGQLSFIETLVEYIRE  579 (643)
Q Consensus       551 L~~La~~~~~~~~i~~~g~i~~Lv~lL~~  579 (643)
                      +-..|......+......+++.+-.+...
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            45556644433455555677777777764

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=92.15  E-value=2.6  Score=45.10  Aligned_cols=237  Identities=19%  Similarity=0.205  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-Ch-HHHHHHHHHHHHhcCCcch
Q 040749          361 KEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DS-KILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~-~~~~~a~~~L~nLs~~~~~  437 (643)
                      .+.+..++..|. +.+...|+.++-.|..-+ .++..|..+..+|.+..+++.+... +. ..--.++.+++-++.+..+
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~-~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~   98 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKC-ADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLN   98 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHh-CCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence            356888888888 345677888888888877 4789999999999999999998543 33 3333344445555555555


Q ss_pred             HHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---------cCChhhH
Q 040749          438 KRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---------NGTIRGK  503 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---------~~~~~~~  503 (643)
                      -..+...+.+..++.++...     ..+....-..   +++       ++. ...+..+...+.         ......+
T Consensus        99 ~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~---~ls-------k~~-~~~~~~~~~~~~~~~~~~~~~~~~lsp~  167 (361)
T PF07814_consen   99 MHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKK---NLS-------KVQ-QKSRSLCKELLSSGSSWKSPKPPELSPQ  167 (361)
T ss_pred             hhhhhchhHHHHHHHHhccccccccccchhhhhhh---hhh-------HHH-HHHHHHHHHHHhccccccccCCcccccc
Confidence            55555566666767777611     0000000000   000       000 011111111110         1122334


Q ss_pred             HHHHHHHHHhc------------c---CCcchHHHHHcCChHHHHHHhcc----C------------ChhhHHHHHHHHH
Q 040749          504 KDAVTALFNLS------------L---NQANKARAIDAGIVLPLMNLLEE----R------------NLGMVDEALSILL  552 (643)
Q Consensus       504 ~~A~~aL~nLs------------~---~~~n~~~lv~~G~v~~Lv~lL~~----~------------~~~~~~~Al~~L~  552 (643)
                      ..|+.+|..++            .   .+-.+..+...|++..++..+.+    .            +-.....++.+|.
T Consensus       168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE  247 (361)
T PF07814_consen  168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE  247 (361)
T ss_pred             cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence            45555555552            0   11225566778889999998862    1            1123566888888


Q ss_pred             HHhC-ChhhHHHhhcC--CcHHH-HHHHHhcC---ChHHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 040749          553 LLAT-HPEGRHKIGQL--SFIET-LVEYIREG---TPKNKECATAVLLELGANNSSFILAALQY  609 (643)
Q Consensus       553 ~La~-~~~~~~~i~~~--g~i~~-Lv~lL~~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~  609 (643)
                      +.+- +.+++......  +.++. +..++..-   .+.....++.++.|+..++|..+..+...
T Consensus       248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~  311 (361)
T PF07814_consen  248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASP  311 (361)
T ss_pred             HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhh
Confidence            8765 44555555442  33333 33333322   23346788999999999888776665543

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.15  E-value=2.3  Score=41.39  Aligned_cols=146  Identities=13%  Similarity=0.105  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc---CC--CHHHHHHHHHHHHhcccccc--chhhhhccCChHHHHH
Q 040749          421 LEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ---SG--STEARENSAAALFSLSMLDE--NKITIGLSDGIPPLVD  493 (643)
Q Consensus       421 ~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~---~~--~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~~g~i~~Lv~  493 (643)
                      ..+|+..|--++.+++.|..+.++..---+-..|.   +.  ....|..+..++..|..+++  ....+.....+|.+++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLr  196 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLR  196 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHH
Confidence            45677777778889999999987764333334443   22  25678888999999886654  3344556899999999


Q ss_pred             HhccCChhhHHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHh
Q 040749          494 LLQNGTIRGKKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKI  564 (643)
Q Consensus       494 lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i  564 (643)
                      ++..|+.-.+..|+..+..+..++.+-..+..        ..++..++..+- .+...+...++.+-..|+..+..|..+
T Consensus       197 Ime~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~aR~lL  276 (315)
T COG5209         197 IMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPHARALL  276 (315)
T ss_pred             HHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHhHHHHH
Confidence            99999998888888888777666665433321        223333443332 366778888888888888888888765


Q ss_pred             hc
Q 040749          565 GQ  566 (643)
Q Consensus       565 ~~  566 (643)
                      ..
T Consensus       277 ~~  278 (315)
T COG5209         277 SS  278 (315)
T ss_pred             hc
Confidence            43

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.06  E-value=0.09  Score=53.50  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=39.4

Q ss_pred             CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      ++-.||||.---...|+.||||.-|..||.+++-. ...|=.|+....
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            56789999988888899999999999999999874 456888866544

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.06  E-value=9.3  Score=42.26  Aligned_cols=270  Identities=16%  Similarity=0.088  Sum_probs=156.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCc-HHHH-HhCCCC-ChHHHHHHHHHHHH-hc----
Q 040749          362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAI-PPLV-QLLPYP-DSKILEHAVTAVLN-LS----  432 (643)
Q Consensus       362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i-~~Lv-~lL~~~-d~~~~~~a~~~L~n-Ls----  432 (643)
                      +....++...... ....++.++..+...+. +..-...+...+.| -.++ ..++.+ +..++-.|+.+|.+ +-    
T Consensus       133 ~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ce-s~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~  211 (858)
T COG5215         133 GLMEEMVRNVGDEQPVSGKCESLGICGYHCE-SEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQG  211 (858)
T ss_pred             HHHHHHHHhccccCchHhHHHHHHHHHHHhh-ccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555543 34567788888888873 33334444444432 2233 344543 77888899999887 32    


Q ss_pred             --CCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHH
Q 040749          433 --IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTA  509 (643)
Q Consensus       433 --~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~a  509 (643)
                        .++.++..+     +...++.-+.++.+++..|-.+|..+-.. ...-..+.+..........+++.++++...|...
T Consensus       212 nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEf  286 (858)
T COG5215         212 NFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEF  286 (858)
T ss_pred             hhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHH
Confidence              123333333     33445566677888888888888876432 1222233333333444556778888887777665


Q ss_pred             HHHhccCCc-----------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHhh
Q 040749          510 LFNLSLNQA-----------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKIG  565 (643)
Q Consensus       510 L~nLs~~~~-----------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~  565 (643)
                      -..+|...-                 +-.+..-+.++|.|+++|..       .+..+-..|..+|...+....  ..|+
T Consensus       287 WsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--d~i~  364 (858)
T COG5215         287 WSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--DKIM  364 (858)
T ss_pred             HHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--hHhH
Confidence            444442110                 11112234588999999965       233445555555554443211  1122


Q ss_pred             cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          566 QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       566 ~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +. ++.-+-.-+++.+-..++.|+.++..+..+..+.+..-.-..++|.+...+.+..--++..+.+++..+.++
T Consensus       365 ~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         365 RP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             HH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            21 222223344566778899999999998766444443333455788888888777778889999998888765

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=91.82  E-value=0.069  Score=60.87  Aligned_cols=50  Identities=24%  Similarity=0.554  Sum_probs=37.4

Q ss_pred             CCCccccccCccccc--C---c--eecCCCCccchHHHHHHHhc-CCCCCCCcCcccc
Q 040749          271 IPHEFLCPITLEIMR--D---P--VIIASGQTFERESVQKWFDS-NHRTCPKTRQTLA  320 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~--d---P--v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~  320 (643)
                      ....-.|+||..++.  |   |  .-..|.|.|.-+|+-+||.+ +..+||.||..++
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            344457999998876  2   2  12347799999999999995 6678999996554

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=91.80  E-value=3.4  Score=48.12  Aligned_cols=210  Identities=15%  Similarity=0.164  Sum_probs=132.7

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHh
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL  454 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL  454 (643)
                      .+.++..++..+.++++.-+   ......+.+|.+..+...+...+++.|...+.++...-+..... .....+.++...
T Consensus       250 ~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~-~~~~~~~l~~~~  325 (759)
T KOG0211|consen  250 TPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDV-VKSLTESLVQAV  325 (759)
T ss_pred             chhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhh-hhhhhHHHHHHh
Confidence            45666677777777764322   25666788999999988887889999988888876521111011 234678888888


Q ss_pred             cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc--CCcchHHHHHcCChHHH
Q 040749          455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL--NQANKARAIDAGIVLPL  532 (643)
Q Consensus       455 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~--~~~n~~~lv~~G~v~~L  532 (643)
                      ..++...+...+.....|+..=.-  ..+...-+++...+++....+++..++.-...++.  +.+....+....++|.+
T Consensus       326 ~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~  403 (759)
T KOG0211|consen  326 EDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEV  403 (759)
T ss_pred             cChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHH
Confidence            889999998888888877642111  34445667888888887777777666665555543  33334455556667777


Q ss_pred             HHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749          533 MNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL  592 (643)
Q Consensus       533 v~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  592 (643)
                      -.+..+.+..+....+.....++--- ++..-+ ....+.+...+++..+.++.+-...+
T Consensus       404 ~~lv~d~~~~vr~a~a~~~~~~~p~~-~k~~ti-~~llp~~~~~l~de~~~V~lnli~~l  461 (759)
T KOG0211|consen  404 QVLVLDNALHVRSALASVITGLSPIL-PKERTI-SELLPLLIGNLKDEDPIVRLNLIDKL  461 (759)
T ss_pred             HHHHhcccchHHHHHhccccccCccC-CcCcCc-cccChhhhhhcchhhHHHHHhhHHHH
Confidence            77777777777766666666553311 111111 13345555555556666666666544

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.75  E-value=0.11  Score=53.71  Aligned_cols=49  Identities=22%  Similarity=0.491  Sum_probs=34.8

Q ss_pred             ccccccCcccccCce----ecCCCCccchHHHHHHHhcC--CCCCCCcCcccccC
Q 040749          274 EFLCPITLEIMRDPV----IIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHL  322 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv----~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~  322 (643)
                      .-.|.||-+....-.    |-.|||+|.-.|+++||...  +++||.|+-.+...
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence            456999955543211    23599999999999999943  35899998555443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=91.69  E-value=0.05  Score=62.26  Aligned_cols=48  Identities=23%  Similarity=0.418  Sum_probs=40.4

Q ss_pred             cccccCcccccCceecCCCCccchHHHHHHHhcCC-CCCCCcCcccccCC
Q 040749          275 FLCPITLEIMRDPVIIASGQTFERESVQKWFDSNH-RTCPKTRQTLAHLS  323 (643)
Q Consensus       275 f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~-~~cP~~~~~l~~~~  323 (643)
                      +.|++|.+ ..+|+++.|||.||+.|+.+.+...+ ..||.|+..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            89999999 88899999999999999999988533 35999987766543

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=91.42  E-value=0.15  Score=37.00  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=21.8

Q ss_pred             cccCccccc--Cceec--CCCCccchHHHHHHHhcCCCCCCCcCccc
Q 040749          277 CPITLEIMR--DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTL  319 (643)
Q Consensus       277 CpIc~~~m~--dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l  319 (643)
                      ||+|.+.|.  |--..  +||+..|+.|..+-...++..||-|+++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789998883  32334  58999999999888775566899998764

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=91.35  E-value=17  Score=36.48  Aligned_cols=195  Identities=16%  Similarity=0.161  Sum_probs=114.3

Q ss_pred             cCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc---
Q 040749          403 CGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE---  477 (643)
Q Consensus       403 ~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---  477 (643)
                      ..++|.|+..|...  .+-++..|..+|.++.          .....+.+-+..+.+..++++.+.-++..+--.+.   
T Consensus        66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~----------~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~  135 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG----------DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDK  135 (289)
T ss_pred             chhhHHHHHHhcccccchHHHHHHHHHHHhhc----------chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhcccc
Confidence            34788888887755  4567778888887765          23334444444445555666655555555521110   


Q ss_pred             --chhhhh--------ccCChHHHHHHhccCC-h-hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHH
Q 040749          478 --NKITIG--------LSDGIPPLVDLLQNGT-I-RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVD  545 (643)
Q Consensus       478 --~k~~i~--------~~g~i~~Lv~lL~~~~-~-~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~  545 (643)
                        +.....        ..+-+..|-..|.+.+ + --++.|..+|.|+-.          ..+|..|++-+..++.-.+.
T Consensus       136 ~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~Salfrh  205 (289)
T KOG0567|consen  136 IANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT----------EEAINALIDGLADDSALFRH  205 (289)
T ss_pred             ccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccchHHHHH
Confidence              000111        1122344444343322 1 123334444444321          11344555556556666677


Q ss_pred             HHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCC
Q 040749          546 EALSILLLLATHPEGRHKIGQLSFIETLVEYIRE--GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGT  623 (643)
Q Consensus       546 ~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~--~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~  623 (643)
                      ++..+|..|-+          .-.|+.|.+.|.+  ..|.+|-.|+.+|..++..           ..++.|.+++.+..
T Consensus       206 EvAfVfGQl~s----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~~  264 (289)
T KOG0567|consen  206 EVAFVFGQLQS----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDEE  264 (289)
T ss_pred             HHHHHHhhccc----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCcH
Confidence            78888877643          3468889888875  4588999999999888642           35677788888888


Q ss_pred             HHHHHHHHHHHHHHH
Q 040749          624 SRAQRKANALLQLIS  638 (643)
Q Consensus       624 ~~~k~~A~~lL~~L~  638 (643)
                      +-+++-+...|.++.
T Consensus       265 ~vv~esc~valdm~e  279 (289)
T KOG0567|consen  265 RVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            888877777776553

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=91.34  E-value=0.9  Score=44.76  Aligned_cols=87  Identities=22%  Similarity=0.185  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHhCChhhHHHhhcCCcHH-------HHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcH
Q 040749          542 GMVDEALSILLLLATHPEGRHKIGQLSFIE-------TLVEYIR-EGTPKNKECATAVLLELGANNSSFI-LAALQYGVY  612 (643)
Q Consensus       542 ~~~~~Al~~L~~La~~~~~~~~i~~~g~i~-------~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~g~i  612 (643)
                      .-+..|+.+|+.|+-.+.+...+...+-..       .|++++. .+++-.||.|+.+|.+||..+...+ ..+.+.+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            448899999999999888888887765543       3444443 3568889999999999999988766 445689999


Q ss_pred             HHHHHHhhcCCHHHHH
Q 040749          613 EHLIQLTEGGTSRAQR  628 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~  628 (643)
                      ..|+.++......++.
T Consensus       219 ~~Li~FiE~a~~~~~~  234 (257)
T PF12031_consen  219 SHLIAFIEDAEQNAHQ  234 (257)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999887554443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.21  E-value=3.1  Score=47.93  Aligned_cols=210  Identities=14%  Similarity=0.114  Sum_probs=127.7

Q ss_pred             ChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHH-h
Q 040749          417 DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDL-L  495 (643)
Q Consensus       417 d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L  495 (643)
                      -+.++..|+..|..+....+....+...+++...++.|++.+..+--+|...+..|+..       .....+|-|... .
T Consensus       740 qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y~  812 (982)
T KOG4653|consen  740 QVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEYL  812 (982)
T ss_pred             cccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHHH
Confidence            34567788888888887666666777888999999999998888888888877777643       123455666652 2


Q ss_pred             ccC---ChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh--HHHhhcCCc
Q 040749          496 QNG---TIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG--RHKIGQLSF  569 (643)
Q Consensus       496 ~~~---~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~--~~~i~~~g~  569 (643)
                      ...   .++.+...-.|+.++....+ -..+-. +-.+...+..+++++...+..+++.|++||.--..  -..+.  .+
T Consensus       813 s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~--ev  889 (982)
T KOG4653|consen  813 SEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH--EV  889 (982)
T ss_pred             hcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH--HH
Confidence            211   12222223355555543221 111111 23455566666767777788999999999873221  11222  34


Q ss_pred             HHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHH---CCcHHHHHHHhhcC-CHHHHHHHHHHHHH
Q 040749          570 IETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQ---YGVYEHLIQLTEGG-TSRAQRKANALLQL  636 (643)
Q Consensus       570 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~---~g~i~~L~~ll~~g-~~~~k~~A~~lL~~  636 (643)
                      +..++.+.. ++++-+|..|+-++..+-.+.+.....+..   ......+..+.... ++.+|-.|...|..
T Consensus       890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            555666555 467889999999998887665544444332   33455555555554 44455555555443

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=91.00  E-value=3.7  Score=39.04  Aligned_cols=93  Identities=23%  Similarity=0.221  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhc
Q 040749          458 STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE  537 (643)
Q Consensus       458 ~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~  537 (643)
                      ++.+|.++..++..|+....+   ++ ...+|.+...|+++++.+++.|+.+|.+|...+--+.+   ...+..++..+.
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~---~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~   73 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN---LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV   73 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH---HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence            467889999999988753322   11 34678899999999999999999999999865433322   223367778888


Q ss_pred             cCChhhHHHHHHHHHHHhCC
Q 040749          538 ERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       538 ~~~~~~~~~Al~~L~~La~~  557 (643)
                      ++++.++..|...+..+...
T Consensus        74 D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   74 DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             CCCHHHHHHHHHHHHHHHHh
Confidence            89999999999999998765

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=0.14  Score=52.88  Aligned_cols=47  Identities=21%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             ccccccCcccccCceecCCCCcc-chHHHHHHHhcCCCCCCCcCccccc
Q 040749          274 EFLCPITLEIMRDPVIIASGQTF-ERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty-~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      --.|=||+.--+|-+++||-|.. |..|-... .-.+..||.||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~L-r~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSL-RYQTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHH-HHhhcCCCccccchHh
Confidence            35799999999999999999975 99997653 3334579999998764

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=90.77  E-value=0.96  Score=43.24  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=79.1

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC---------CChHHHHHHHHHHHHh
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY---------PDSKILEHAVTAVLNL  431 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~---------~d~~~~~~a~~~L~nL  431 (643)
                      .....++..|.+.....  +.+..|+.....++ ..-..+++.||+..|+.+|..         .+...+..++.+|..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            45677788887655432  44555554443333 445667788999999988763         2457788899999999


Q ss_pred             cCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcc
Q 040749          432 SIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLS  473 (643)
Q Consensus       432 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls  473 (643)
                      ..+..+...+. ..+++..|+..|.+.+..++..++.+|..++
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98888877777 5789999999999999999999999988765

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.65  E-value=0.58  Score=41.15  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=56.2

Q ss_pred             CcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          568 SFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       568 g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ..+..|+++|.. .++.+..-|+.=|..++..-|..+..+.+.|+-..+++++.+.++++|..|..+++.+
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            358889999953 3566666677778889988888888888899999999999999999999999998865

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=90.63  E-value=0.15  Score=37.89  Aligned_cols=47  Identities=11%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      +..|=.|...-...++++|||..|+.|..-+   ....||.|+.++...+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence            4556677777788899999999999886543   3346999999887643

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.58  E-value=0.21  Score=50.05  Aligned_cols=49  Identities=20%  Similarity=0.355  Sum_probs=38.7

Q ss_pred             ccccCcc-cccCce----ecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749          276 LCPITLE-IMRDPV----IIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       276 ~CpIc~~-~m~dPv----~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  324 (643)
                      .||+|.. .+..|-    +-+|||+.|-+|.-+.|..|...||.|+..+-...+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            4888864 344552    238999999999999999999999999888765543

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=90.57  E-value=0.12  Score=40.78  Aligned_cols=49  Identities=27%  Similarity=0.524  Sum_probs=34.3

Q ss_pred             CCccccccCcccccC-ceec-CCCCccchHHHHHHHhc--CCCCCCCcCcccc
Q 040749          272 PHEFLCPITLEIMRD-PVII-ASGQTFERESVQKWFDS--NHRTCPKTRQTLA  320 (643)
Q Consensus       272 ~~~f~CpIc~~~m~d-Pv~~-~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~  320 (643)
                      |-+-.||-|.-.=.| |.+. .|-|.|-..||.+|++.  +...||+||+..+
T Consensus        29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            444556666544444 4443 68999999999999984  3457999998654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.57  E-value=16  Score=41.97  Aligned_cols=208  Identities=14%  Similarity=0.140  Sum_probs=132.3

Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCC
Q 040749          408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG  487 (643)
Q Consensus       408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~  487 (643)
                      -|..+|.+........|+.-+.++-....+.     ...+|.+|+-..+.+.+++...---|..-+..+.+-..    --
T Consensus        39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dv-----S~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL----LS  109 (968)
T KOG1060|consen   39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDV-----SLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL----LS  109 (968)
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHhcCCcH-----HHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee----ee
Confidence            4677888776666666666555544333331     33578888888888999988665555555443333221    24


Q ss_pred             hHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhc
Q 040749          488 IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQ  566 (643)
Q Consensus       488 i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~  566 (643)
                      |..+-+-|++.++-++..|+++|..+=      .-++..=++-++-+...+..+.++..|+.++-.|-+ .++.+.+   
T Consensus       110 IntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~q---  180 (968)
T KOG1060|consen  110 INTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQ---  180 (968)
T ss_pred             HHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHH---
Confidence            677777888999999988888877542      222222222233344456788888888888877754 5555543   


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                        .+..+-.+|.+.+|.+--.|+.+.-.+|-..   ...+  .+-...|+.++..-++=.|..+..+|..-.|+
T Consensus       181 --L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR~  247 (968)
T KOG1060|consen  181 --LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYARH  247 (968)
T ss_pred             --HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHHh
Confidence              3456667888899999999999998888642   2222  23466677777666666666665555544443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.49  E-value=19  Score=42.90  Aligned_cols=222  Identities=16%  Similarity=0.121  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      ...+..|++.|++.+..++..|++-+..++...|  + .+++ .+|...+.++... +...-..|+.+|+.|+...--..
T Consensus       340 E~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            3567778888888899999999999999998877  2 2222 2566666666543 35556688888888875221111


Q ss_pred             HHHhcCChHHHHHHhcC--------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHH-----HHhccCChhhHHHH
Q 040749          440 LIAQQGAIPAIIEILQS--------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV-----DLLQNGTIRGKKDA  506 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~--------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-----~lL~~~~~~~~~~A  506 (643)
                      .. -..++|.|+.-|.-        ...-+|..|+.+.|.++...+...  . .+.+..|.     ..+-+....+++.|
T Consensus       416 s~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~--l-~p~l~~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  416 SL-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSD--L-KPVLQSLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             HH-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhh--h-hHHHHHHHHHHHHHHhcCchhhHhHHH
Confidence            00 01245555554421        123578888888888864322110  0 11222222     22335567788888


Q ss_pred             HHHHHHhccCCcch----H---------------------H-HHH-cCChHHHHHHhcc-----CChhhHHHHHHHHHHH
Q 040749          507 VTALFNLSLNQANK----A---------------------R-AID-AGIVLPLMNLLEE-----RNLGMVDEALSILLLL  554 (643)
Q Consensus       507 ~~aL~nLs~~~~n~----~---------------------~-lv~-~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~L  554 (643)
                      ..|+........|.    .                     . +.+ .|...++++.|..     =+..+++.+..+|.+|
T Consensus       492 sAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~L  571 (1133)
T KOG1943|consen  492 SAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKL  571 (1133)
T ss_pred             HHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence            88887654332222    1                     0 111 4556666665533     2678899999999998


Q ss_pred             hCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHH
Q 040749          555 ATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL  593 (643)
Q Consensus       555 a~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~  593 (643)
                      +...   ........++.++....+++...+.-+..+..
T Consensus       572 s~~~---pk~~a~~~L~~lld~~ls~~~~~r~g~~la~~  607 (1133)
T KOG1943|consen  572 SLTE---PKYLADYVLPPLLDSTLSKDASMRHGVFLAAG  607 (1133)
T ss_pred             HHhh---HHhhcccchhhhhhhhcCCChHHhhhhHHHHH
Confidence            7643   23334567777877777777666555444433

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=90.04  E-value=18  Score=40.21  Aligned_cols=113  Identities=22%  Similarity=0.191  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749          361 KEEIVSLVEQLSSSK----LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~----~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      ..+...+++.+.++.    .-....-++.+..+.+.|+..+..+.     |.|-.-|++.-..++-.++.++..++...-
T Consensus       222 kma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k~emV~lE~Ar~v~~~~~~nv  296 (898)
T COG5240         222 KMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKENSQALLQLR-----PFLNSWLSDKFEMVFLEAARAVCALSEENV  296 (898)
T ss_pred             HHHHHHHHHHhhcccccccchhheehHHHHHHHHHhChHHHHHHH-----HHHHHHhcCcchhhhHHHHHHHHHHHHhcc
Confidence            345566677666543    11122344555566667777666553     667677777667777888888888775331


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI  480 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~  480 (643)
                      .-. +. ...+..|-.+|++...-.|-.|.++|-.|+.....+.
T Consensus       297 ~~~-~~-~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         297 GSQ-FV-DQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             CHH-HH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            111 11 2345666677788888889999999999987654443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=90.00  E-value=7.2  Score=43.83  Aligned_cols=166  Identities=17%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHH---hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhc
Q 040749          368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIA---DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQ  444 (643)
Q Consensus       368 v~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~---~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~  444 (643)
                      +..+-.-+++++.=|+..||.+.++...+-..+-   .+..+..++..+. .++.-+.-++++|.|+-.++.++..+...
T Consensus       550 l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~  628 (745)
T KOG0301|consen  550 LAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSR  628 (745)
T ss_pred             HHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            3334445678888999999999987665544333   2335666666665 56777889999999999998888877643


Q ss_pred             --CChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHhccC-----ChhhHHHHHHHHHHhcc
Q 040749          445 --GAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLLQNG-----TIRGKKDAVTALFNLSL  515 (643)
Q Consensus       445 --g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL~~~-----~~~~~~~A~~aL~nLs~  515 (643)
                        -.+.+++..=...+..++...+...+|+|..  ..+-.    .+..+.|..++...     +.+....++.||.+|+.
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t  704 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMT  704 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcc
Confidence              1222222222222345555555555565521  22211    35555555554422     34567778889999999


Q ss_pred             CCcchHHHHHcCChHHHHHHhcc
Q 040749          516 NQANKARAIDAGIVLPLMNLLEE  538 (643)
Q Consensus       516 ~~~n~~~lv~~G~v~~Lv~lL~~  538 (643)
                      .+.+..++...--+..+++-+.+
T Consensus       705 ~~~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  705 VDASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             ccHHHHHHHHhcCHHHHHHHHHH
Confidence            88888887776667777777655

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=89.98  E-value=26  Score=41.35  Aligned_cols=227  Identities=17%  Similarity=0.182  Sum_probs=126.0

Q ss_pred             hHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC----CCC----hHHHHHHHH
Q 040749          360 QKEEIVSLVEQLSSS-----KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP----YPD----SKILEHAVT  426 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~-----~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~d----~~~~~~a~~  426 (643)
                      +.+++..++..+.+.     ..+.-...++.|+..+ .-+.||..+.+.|+++.|+..|.    .+.    ..+-+..+.
T Consensus       115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~  193 (802)
T PF13764_consen  115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLE  193 (802)
T ss_pred             cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHH
Confidence            457788888888752     2333344555555565 45899999999999999988774    333    455555555


Q ss_pred             HHHHhcCCcc---hHH--HHHhc--------CChHHHHHHhcCC----CHHHHHHHHHHHHhccccccchhhhhccCChH
Q 040749          427 AVLNLSIDES---NKR--LIAQQ--------GAIPAIIEILQSG----STEARENSAAALFSLSMLDENKITIGLSDGIP  489 (643)
Q Consensus       427 ~L~nLs~~~~---~k~--~i~~~--------g~i~~Lv~lL~~~----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~  489 (643)
                      ++..+.....   ...  .....        .-+..+++.+.+.    ++.+....+.+|-.|+..+..+        +.
T Consensus       194 IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~--------m~  265 (802)
T PF13764_consen  194 IIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEK--------MD  265 (802)
T ss_pred             HHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH--------HH
Confidence            5544432111   100  00111        1256666666543    5778888889999988755443        33


Q ss_pred             HHHHHhcc-------C---ChhhHHHHHHHHHHhcc----CC---cchHHHHHcCChHHHHHHhccC--------Chhh-
Q 040749          490 PLVDLLQN-------G---TIRGKKDAVTALFNLSL----NQ---ANKARAIDAGIVLPLMNLLEER--------NLGM-  543 (643)
Q Consensus       490 ~Lv~lL~~-------~---~~~~~~~A~~aL~nLs~----~~---~n~~~lv~~G~v~~Lv~lL~~~--------~~~~-  543 (643)
                      .|++.++.       +   +... ...+.....++.    +.   .-+..+++.|++...+++|...        ++++ 
T Consensus       266 ~Lv~~F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk  344 (802)
T PF13764_consen  266 ALVEHFKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWK  344 (802)
T ss_pred             HHHHHHHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHH
Confidence            33333321       1   1111 122344444432    11   1256688999999999888652        1222 


Q ss_pred             -------HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhc
Q 040749          544 -------VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLELGA  597 (643)
Q Consensus       544 -------~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~  597 (643)
                             ...++.+|.-||......+.+....+++ ++..|...  +..+-..|=.+|-.|+.
T Consensus       345 ~~l~~psLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  345 EFLSRPSLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHhcCCcHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence                   3457788888877544444445555663 33444322  23344445555555555

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=89.94  E-value=5.8  Score=42.67  Aligned_cols=211  Identities=14%  Similarity=0.138  Sum_probs=124.7

Q ss_pred             HHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHh--cCCcchHHH--------HHhcCChHHH
Q 040749          381 EAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL--SIDESNKRL--------IAQQGAIPAI  450 (643)
Q Consensus       381 ~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nL--s~~~~~k~~--------i~~~g~i~~L  450 (643)
                      .|+..|-.+....+..-..+.+.+++..++..|+.+-....+.  ....+-  ...++.+..        ....+.++.|
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~r~~llK~l   80 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVDGYSISYQRQQLLKSL   80 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCcccccccccccCHHHHHHHHHH
Confidence            4566666666666667777888999999999886531111110  000000  000111111        1123333333


Q ss_pred             HHHhcCCCHHHHHHHHHHHHhccc-cccch---hhhhc-cCChHHHHHHhccCC---hhhHHHHHHHHHHhccCCcc-hH
Q 040749          451 IEILQSGSTEARENSAAALFSLSM-LDENK---ITIGL-SDGIPPLVDLLQNGT---IRGKKDAVTALFNLSLNQAN-KA  521 (643)
Q Consensus       451 v~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k---~~i~~-~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n-~~  521 (643)
                      ++.+.               .+.. .....   ..+.+ ......|...+++..   ..+-..|+..+..+..+++. -.
T Consensus        81 Lk~l~---------------~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   81 LKFLS---------------HAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             HHHHH---------------HHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence            33332               1111 11111   12233 333455555566543   45667788888888776555 45


Q ss_pred             HHHHcCChHHHHHHhc-c---CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChH--H--HHHH---HH
Q 040749          522 RAIDAGIVLPLMNLLE-E---RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPK--N--KECA---TA  590 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~-~---~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~--~--~e~A---~~  590 (643)
                      .+.++|+++.+++.+. .   ++.++....-.+|..||-+..|.+.+.+.+.+..+++++.+....  .  ++.|   -.
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~  225 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGN  225 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHH
Confidence            5778999999999998 4   566777777788999999999999999999999999998753211  1  1222   23


Q ss_pred             HHHHHhcCCHHHHHHHHH
Q 040749          591 VLLELGANNSSFILAALQ  608 (643)
Q Consensus       591 ~L~~L~~~~~~~~~~~~~  608 (643)
                      .+-.|.++.|..+..+++
T Consensus       226 ~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  226 SFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHccCHHHHHHHHH
Confidence            356678888876666544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=89.78  E-value=8.6  Score=40.56  Aligned_cols=156  Identities=17%  Similarity=0.107  Sum_probs=117.0

Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-cchH-HH---HHcCChHHHHHHhcc-CChhhHHHHHHHHHHHh
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-ANKA-RA---IDAGIVLPLMNLLEE-RNLGMVDEALSILLLLA  555 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~n~~-~l---v~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La  555 (643)
                      +...+.+..|+..|..-+-+.+++++....++.... +++. ..   +....-..|..++.. .++++.-.+-.+|...+
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~  151 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECI  151 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHT
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHH
Confidence            345688999999999999999999999999987643 2222 12   222223333333433 56788888889999999


Q ss_pred             CChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhhcCCHHHHHHHHH
Q 040749          556 THPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG---VYEHLIQLTEGGTSRAQRKANA  632 (643)
Q Consensus       556 ~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~  632 (643)
                      .++.....+.....+..+.+.+...+=.+-..|...+..+-...+..+...+..+   .+.....++.+++--+|+++..
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk  231 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK  231 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence            9988888888888899999999988888888999999987777777766666533   5677888999999999999999


Q ss_pred             HHHHH
Q 040749          633 LLQLI  637 (643)
Q Consensus       633 lL~~L  637 (643)
                      +|..+
T Consensus       232 LL~el  236 (335)
T PF08569_consen  232 LLGEL  236 (335)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99865

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=89.71  E-value=2.6  Score=42.40  Aligned_cols=93  Identities=18%  Similarity=0.239  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcC
Q 040749          379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQS  456 (643)
Q Consensus       379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~  456 (643)
                      ...|+..|.-++--+|..|..+.+..++..|+.+|. ..++.++..++.+|..+-. ++.|...+-+.+|+..++.++++
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk~  187 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLKS  187 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHcc
Confidence            445667777777778999999999999999999995 4578899999998877655 67888888899999999999987


Q ss_pred             C--CHHHHHHHHHHHHh
Q 040749          457 G--STEARENSAAALFS  471 (643)
Q Consensus       457 ~--~~e~~~~Aa~~L~~  471 (643)
                      .  +.+++-.+...|+-
T Consensus       188 ~~~~~~~r~K~~EFL~f  204 (257)
T PF08045_consen  188 KSTDRELRLKCIEFLYF  204 (257)
T ss_pred             ccccHHHhHHHHHHHHH
Confidence            5  46777777776653

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.70  E-value=6.2  Score=45.27  Aligned_cols=239  Identities=14%  Similarity=0.111  Sum_probs=148.1

Q ss_pred             cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHH-HhcCCcchHHHHHhcCChHHHHHHhcCCC-HHHHHHHHHHH
Q 040749          392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVL-NLSIDESNKRLIAQQGAIPAIIEILQSGS-TEARENSAAAL  469 (643)
Q Consensus       392 ~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~-nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-~e~~~~Aa~~L  469 (643)
                      ....-|...++.|+...|+++.....+...-++..+|. .++.  .+..   ....++++...+.+.. .--...++-++
T Consensus       492 ~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f--~~~~---~~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  492 KEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF--PGER---SYEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC--CCCc---hhhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            34555667778899999999887777777777777776 1111  1110   1234444444443322 11233567788


Q ss_pred             Hhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH-HHH-cCChHHHHHHhccCChhhHHH
Q 040749          470 FSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR-AID-AGIVLPLMNLLEERNLGMVDE  546 (643)
Q Consensus       470 ~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~-lv~-~G~v~~Lv~lL~~~~~~~~~~  546 (643)
                      .||++.+ ..|..|...-+++.+-.++-..++..+..++..+.||..++---.+ +++ ...++.....+...+....-+
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            8887654 4566677666666666667777888999999999999877665444 333 334455555554444444555


Q ss_pred             HHHHHHHHhCChhh-HHHhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCH
Q 040749          547 ALSILLLLATHPEG-RHKIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTS  624 (643)
Q Consensus       547 Al~~L~~La~~~~~-~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~  624 (643)
                      +++++..+....++ ...+.+ ......++.++.+.++.++...+.+.+++.....+....+.....++.+..+..-.-.
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a  726 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNRA  726 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhh
Confidence            55666645443222 221222 3567778888999999999999998888777666667777777777777765554333


Q ss_pred             HHHHHHHHHHH
Q 040749          625 RAQRKANALLQ  635 (643)
Q Consensus       625 ~~k~~A~~lL~  635 (643)
                      ..++.|...|.
T Consensus       727 ~~~~~~~~~l~  737 (748)
T KOG4151|consen  727 PKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhHHH
Confidence            33444444443

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=89.18  E-value=7  Score=40.57  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=109.0

Q ss_pred             HHHHHH-HHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-Cc-chHH
Q 040749          363 EIVSLV-EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DE-SNKR  439 (643)
Q Consensus       363 ~i~~Lv-~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~-~~k~  439 (643)
                      .+..+| ..+.+.++.+|..|+++|+..+--+.+.-     ...++.+...+..++..++..|+.++..+.. +. ....
T Consensus        27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~  101 (298)
T PF12719_consen   27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFD  101 (298)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhcc
Confidence            344444 67788899999999999998885554221     1146677777777799999999999988754 21 1111


Q ss_pred             -------HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC----ChhhHHHHHH
Q 040749          440 -------LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG----TIRGKKDAVT  508 (643)
Q Consensus       440 -------~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~----~~~~~~~A~~  508 (643)
                             .......++.+.+.|.+.+++++..|+..++.|-..+....   .+..+..|+-+--+.    +.+.+..-..
T Consensus       102 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~  178 (298)
T PF12719_consen  102 SESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSV  178 (298)
T ss_pred             chhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHH
Confidence                   12234567788888888899999999999999865433322   134445554443322    3344444444


Q ss_pred             HHHHhccCCcchHHHHHcCChHHHHHHhcc
Q 040749          509 ALFNLSLNQANKARAIDAGIVLPLMNLLEE  538 (643)
Q Consensus       509 aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~  538 (643)
                      .+-..+..+......+....++.+-.+...
T Consensus       179 Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  179 FFPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            444566666655666667777777777654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=89.18  E-value=6.2  Score=47.24  Aligned_cols=229  Identities=14%  Similarity=0.131  Sum_probs=132.0

Q ss_pred             cHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc----ccchh
Q 040749          406 IPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML----DENKI  480 (643)
Q Consensus       406 i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~----~~~k~  480 (643)
                      ++.+...+++ .....+.+|+..|..||..-..-..+  .-++|-++.++.....++|..|..+|..+...    +..-.
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L--DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~da  501 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL--DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDA  501 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH--hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccc
Confidence            4444444443 24566788999999998743322222  34789999999999999999999998876422    22223


Q ss_pred             hhhccCChHHHHHHhccCC-hhhHHHHHHHHHHhcc------------------CCcch-----------HHHHHcCChH
Q 040749          481 TIGLSDGIPPLVDLLQNGT-IRGKKDAVTALFNLSL------------------NQANK-----------ARAIDAGIVL  530 (643)
Q Consensus       481 ~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~------------------~~~n~-----------~~lv~~G~v~  530 (643)
                      .|.-.-.+|.|-.++.+.+ ..++..=+..|..|+.                  +..|-           ...+-.++-+
T Consensus       502 niF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~  581 (1431)
T KOG1240|consen  502 NIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQ  581 (1431)
T ss_pred             hhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHH
Confidence            3444567788888887733 3333222222222210                  11111           0111122333


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 040749          531 PLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG  610 (643)
Q Consensus       531 ~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g  610 (643)
                      ..+.+|.++++-++..-+..|.-||-.= ||+. .+.=.++.|+..|.+.+...|-.-..-+.-+|..-+.   .-+++.
T Consensus       582 ~v~sLlsd~~~~Vkr~Lle~i~~LC~FF-Gk~k-sND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~---rs~sey  656 (1431)
T KOG1240|consen  582 MVSSLLSDSPPIVKRALLESIIPLCVFF-GKEK-SNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGW---RSVSEY  656 (1431)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHh-hhcc-cccchHHHHHHHhcCccHHHHHHHHhhccceEEEEee---eeHHHH
Confidence            4445555555555555555566665310 1100 0112467777888777766665555555544432111   112456


Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          611 VYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       611 ~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      .+|.|.+-+.++.+.+-.+|...|..|.+..
T Consensus       657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~  687 (1431)
T KOG1240|consen  657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLG  687 (1431)
T ss_pred             HHHHHHHhccCcchhhHHHHHHHHHHHHHhc
Confidence            7888889999999999999999999888754

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.13  E-value=0.19  Score=55.11  Aligned_cols=59  Identities=29%  Similarity=0.505  Sum_probs=40.6

Q ss_pred             CCccccccCccccc----CceecCCCCccchHHHHHHHhcCCCCCCCcCcc-----cccCCCCccHHHHHHH
Q 040749          272 PHEFLCPITLEIMR----DPVIIASGQTFERESVQKWFDSNHRTCPKTRQT-----LAHLSIAPNYALKNLI  334 (643)
Q Consensus       272 ~~~f~CpIc~~~m~----dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~-----l~~~~l~pn~~l~~~i  334 (643)
                      -+-+.|+||...+.    .||.+-||||.|+.|.+..++.   +|| |...     .+.++..-|+++-..+
T Consensus         9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~---scp-~~~De~~~~~~~~e~p~n~alL~~~   76 (861)
T KOG3161|consen    9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA---SCP-TKRDEDSSLMQLKEEPRNYALLRRE   76 (861)
T ss_pred             HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc---cCC-CCccccchhcChhhcchhHHHHHhh
Confidence            34578999976664    7999999999999999998754   677 3211     1222344466665554

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=88.90  E-value=0.27  Score=49.92  Aligned_cols=48  Identities=19%  Similarity=0.341  Sum_probs=34.3

Q ss_pred             ccccCccccc--Ccee--cCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          276 LCPITLEIMR--DPVI--IASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       276 ~CpIc~~~m~--dPv~--~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      .||+|.+.|.  |--.  -+||...|+.|....-+.=+..||.|+...+...
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            3999999996  3322  3689887888865544433457999998887654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=88.70  E-value=4.5  Score=47.46  Aligned_cols=183  Identities=14%  Similarity=0.096  Sum_probs=115.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcC---CcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG---AIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g---~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      .+.+-..+.+.+|..+.+|+..+.....+..    .....+   .+..++.... ..+..+...|+..|.-++..-....
T Consensus       255 ~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~----~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~  330 (815)
T KOG1820|consen  255 TKNLETEMLSKKWKDRKEALEELVAILEEAK----KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLF  330 (815)
T ss_pred             ChHHHHhhhccchHHHHHHHHHHHHHHhccc----cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhh
Confidence            4456667778899999999999988874433    222233   3333444332 3356666777777777775221111


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CC-
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQ-  517 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~-  517 (643)
                      .=...+.++.+++-+......++..+..++-..+..      -.....++.+..+++++++..+......+.-... .+ 
T Consensus       331 ~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~  404 (815)
T KOG1820|consen  331 RKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNS------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP  404 (815)
T ss_pred             HHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhc------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence            111356788888888877666666655555444321      1124567888888999999888776555544332 22 


Q ss_pred             cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                      .....-.-.++++.++.+..+.+.+++..|+.++..+..
T Consensus       405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHH
Confidence            222222335677888888888899999999888877643

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.63  E-value=0.23  Score=51.31  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=36.0

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +.|..-.|-||.+-..+.+.+||||+.|..-..++    ...||.|++.+.
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~----l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKH----LPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEEchHHHhh----CCCCchhHHHHH
Confidence            45566779999999999999999999883333332    346999998765

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=88.58  E-value=23  Score=35.25  Aligned_cols=136  Identities=16%  Similarity=0.145  Sum_probs=84.2

Q ss_pred             cHHHHH-hCCCCChHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749          406 IPPLVQ-LLPYPDSKILEHAVTAVLNLSIDE-SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG  483 (643)
Q Consensus       406 i~~Lv~-lL~~~d~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~  483 (643)
                      +|.|+. +-+..+++.+...+.+|..++.++ .+...     ++..|..+...+..+.+..+...+..+-..++-   ..
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r---~f   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDR---HF   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCch---HH
Confidence            344555 445568999999999999999877 33333     345555666666666655555665555332111   00


Q ss_pred             ccCChHHHHHH--hc------cC--ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh-ccCChhhHHHHHHHHH
Q 040749          484 LSDGIPPLVDL--LQ------NG--TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL-EERNLGMVDEALSILL  552 (643)
Q Consensus       484 ~~g~i~~Lv~l--L~------~~--~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL-~~~~~~~~~~Al~~L~  552 (643)
                        +.+..++..  ++      ++  ..+.....+.++..+|...+++.    ...++.+..+| .+.++.++..++..|.
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~  147 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALA  147 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence              333433333  11      11  23444555667888887666622    23567788888 6777888889999999


Q ss_pred             HHh
Q 040749          553 LLA  555 (643)
Q Consensus       553 ~La  555 (643)
                      .||
T Consensus       148 ~Lc  150 (234)
T PF12530_consen  148 PLC  150 (234)
T ss_pred             HHH
Confidence            999

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=88.39  E-value=0.12  Score=57.86  Aligned_cols=48  Identities=27%  Similarity=0.466  Sum_probs=39.3

Q ss_pred             CccccccCcccccCcee---cCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          273 HEFLCPITLEIMRDPVI---IASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~---~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ..-.||+|..-+.|-.+   .+|+|-||..||..|..-. .+||.|+..+..
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a-qTCPiDR~EF~~  172 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCA-QTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhc-ccCchhhhhhhe
Confidence            45689999999988755   3699999999999999854 489999877654

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=88.29  E-value=11  Score=43.88  Aligned_cols=264  Identities=16%  Similarity=0.113  Sum_probs=151.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      ++.....++...++.+..++.....++.. +...+..+.....+|.+-.+....+..++...+....+++---. +..- 
T Consensus       357 ~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~t-  434 (759)
T KOG0211|consen  357 VPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERT-  434 (759)
T ss_pred             hhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcC-
Confidence            55556666666666666666655555532 22334555556667888777777777777776666666543111 1111 


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                      -.-.+|.++..++...++++.+..+.+..+-...+ .-......-.+|.++.+-....++++......+.-++....  .
T Consensus       435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~  512 (759)
T KOG0211|consen  435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V  512 (759)
T ss_pred             ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence            13356666777777778888887776655433222 22233345567788877766678888888888877765433  2


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHH---HHHHhcC
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV---LLELGAN  598 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~---L~~L~~~  598 (643)
                      .+.+.-..+.+..-+.+....+.+.|...+..++..-. .+.- ....++.++.+...++...|...+-.   |..++..
T Consensus       513 ~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~-~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~  590 (759)
T KOG0211|consen  513 EFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWA-RLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQ  590 (759)
T ss_pred             HHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchh-HHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhcc
Confidence            33333333333333444455677888877777765321 1111 12345555555544444444443333   3333321


Q ss_pred             CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       599 ~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                            .+.....++.+..+..+..+.+|-+++..|..+..
T Consensus       591 ------ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  591 ------EITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             ------HHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence                  12223467778888888888888888887776543

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.11  E-value=0.52  Score=48.93  Aligned_cols=63  Identities=25%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             cccccCccccc------CceecCCCCccchHHHHHHHhcCCCCCCCcCcccc--c---CCCCccHHHHHHHHHH
Q 040749          275 FLCPITLEIMR------DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA--H---LSIAPNYALKNLILQW  337 (643)
Q Consensus       275 f~CpIc~~~m~------dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~--~---~~l~pn~~l~~~i~~~  337 (643)
                      +.|-||.+.+.      -|-++.|||++|..|+.+.+..+...||+|+.+..  .   ..+..|+.+...++..
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            56888887776      47788899999999999988877778999999843  2   2356788887777664

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.84  E-value=0.25  Score=49.24  Aligned_cols=42  Identities=26%  Similarity=0.481  Sum_probs=33.3

Q ss_pred             ccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccc
Q 040749          274 EFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +..|.||++..+|-|.++|||. .|-.|=.+.     ..||+|++.+.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm-----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM-----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhhcccc-----ccCchHHHHHH
Confidence            6889999999999999999995 366665432     26999987543

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=86.61  E-value=27  Score=40.85  Aligned_cols=224  Identities=16%  Similarity=0.087  Sum_probs=135.4

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchHHHHH--hcCChHH
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIA--QQGAIPA  449 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k~~i~--~~g~i~~  449 (643)
                      +..|..-.+|...+...+...+.+...+..  .+...++.+..+ .+.++..|+.++...++    ...+.  ..+.++.
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~----~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCK----VKVLLSLQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccC----ceeccccchHHHHH
Confidence            344555556777777666443333322221  223334444333 44556666666666552    11111  3567777


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc--cCChhhHHHHHHHHHHhccCCcchHHHHHcC
Q 040749          450 IIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ--NGTIRGKKDAVTALFNLSLNQANKARAIDAG  527 (643)
Q Consensus       450 Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G  527 (643)
                      |+++....+.++......+|+.....+.......++-..|..+.++-  +.++.+...+-.++..|+....+...+.+ -
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~  613 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-R  613 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-H
Confidence            88887777788888888888888766655555556667787777753  34666666666666666654333333332 3


Q ss_pred             ChHHHHHHhccCC----hhhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHH-HhcCChHHHHHHHHHHHHHhcCCH
Q 040749          528 IVLPLMNLLEERN----LGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEY-IREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       528 ~v~~Lv~lL~~~~----~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~l-L~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                      .+|.++..+..+.    ..+..-|+.+|..+.++  ++--..+.. -++|.+.+. +++++..+-.++..+|..+.+.+.
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            6899999998754    66777788888866552  222222222 345666664 456778889999999998887766


Q ss_pred             HHHH
Q 040749          601 SFIL  604 (643)
Q Consensus       601 ~~~~  604 (643)
                      +...
T Consensus       693 eq~~  696 (1005)
T KOG2274|consen  693 EQLL  696 (1005)
T ss_pred             HHHH
Confidence            5433

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=86.15  E-value=1.3  Score=28.76  Aligned_cols=30  Identities=13%  Similarity=0.396  Sum_probs=25.7

Q ss_pred             cHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          569 FIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       569 ~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      .+|.+++++.+.++++|..|+.+|..++..
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999998753

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=86.05  E-value=8.4  Score=42.04  Aligned_cols=186  Identities=18%  Similarity=0.188  Sum_probs=110.4

Q ss_pred             HHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          363 EIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       363 ~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      .+..++.... +.++..+..++..+..+...-+..- .+  ...+..+...+ ...+...+..++.++.-++     |..
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~-~l--~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~-----KaL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD-DL--DEFLDSLLQSISSSEDSELRPQALEILIWIT-----KAL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh-hH--HHHHHHHHhhhcccCCcchhHHHHHHHHHHH-----HHH
Confidence            4555555544 3346667777777777774311111 00  11233333333 2334444455555444333     222


Q ss_pred             HH-----hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccc--h------hhhhc----cCChHHHHHHhccCChhh
Q 040749          441 IA-----QQGAIPAIIEILQSGSTEARENSAAALFSLSML-DEN--K------ITIGL----SDGIPPLVDLLQNGTIRG  502 (643)
Q Consensus       441 i~-----~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~--k------~~i~~----~g~i~~Lv~lL~~~~~~~  502 (643)
                      ++     ....+..++.+|.+  +++...|+..+.-|..+ ++.  +      ..+..    ...+|.|++..+..+...
T Consensus       262 v~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~  339 (415)
T PF12460_consen  262 VMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEI  339 (415)
T ss_pred             HHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhh
Confidence            22     12245667777766  56778888888877655 322  1      11112    345677777777766668


Q ss_pred             HHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749          503 KKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLATHP  558 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  558 (643)
                      +..-+.||.++..+-+....+-+ ..++|.|++-|..++.+++..++.+|..+....
T Consensus       340 k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  340 KSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88889999998876554433333 557888899998888889999999999887754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=85.75  E-value=2.2  Score=41.47  Aligned_cols=97  Identities=21%  Similarity=0.215  Sum_probs=76.1

Q ss_pred             hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-----hHHHHHHHHHHHHHhcCCHHHH-HHHHHCCcHHH
Q 040749          541 LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-----PKNKECATAVLLELGANNSSFI-LAALQYGVYEH  614 (643)
Q Consensus       541 ~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~~~~~~-~~~~~~g~i~~  614 (643)
                      ..-+..|+.+|..++++|+.+..+.++.+---+...|...+     ...|-.+++++..|..++...+ ..++...++|.
T Consensus       114 snRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL  193 (315)
T COG5209         114 SNRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL  193 (315)
T ss_pred             hhHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence            34467789999999999999999999876555566665322     3457889999999998876654 55667889999


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHH
Q 040749          615 LIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       615 L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      +++++..|++--|--|..++..+
T Consensus       194 cLrIme~gSElSktvaifI~qki  216 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKI  216 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHH
Confidence            99999999998888887777654

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=85.69  E-value=0.59  Score=48.49  Aligned_cols=52  Identities=27%  Similarity=0.468  Sum_probs=45.0

Q ss_pred             ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      ...|.+++-.+.|||.+..|..|+...|-.|+.. +.+=|.+++++...++++
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dLIk   91 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDLIK   91 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCcccccccee
Confidence            4578999999999999999999999999999986 446788888888777665

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=85.34  E-value=0.52  Score=47.59  Aligned_cols=43  Identities=26%  Similarity=0.505  Sum_probs=35.8

Q ss_pred             ccccccCccccc----CceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749          274 EFLCPITLEIMR----DPVIIASGQTFERESVQKWFDSNHRTCPKTRQ  317 (643)
Q Consensus       274 ~f~CpIc~~~m~----dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~  317 (643)
                      ++.||||.+.+.    +|...+|||+.-..|.+.....+ .+||.|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            356999998775    67778999998888888777777 89999977

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=84.50  E-value=15  Score=40.05  Aligned_cols=129  Identities=14%  Similarity=0.107  Sum_probs=83.8

Q ss_pred             CChHHHHHHhccCChhhHHHHHHHHHHhccC-C--------cchHHHHHc----CChHHHHHHhccCChhhHHHHHHHHH
Q 040749          486 DGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-Q--------ANKARAIDA----GIVLPLMNLLEERNLGMVDEALSILL  552 (643)
Q Consensus       486 g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~--------~n~~~lv~~----G~v~~Lv~lL~~~~~~~~~~Al~~L~  552 (643)
                      ..+..|+.++.+  +.....|+.++.-|... +        .+...+.+.    -++|.|++.+...+...+...+.+|.
T Consensus       271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs  348 (415)
T PF12460_consen  271 ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALS  348 (415)
T ss_pred             HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHH
Confidence            346667777766  55667777777776654 1        122223332    35677777777666667888888898


Q ss_pred             HHhCChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Q 040749          553 LLATHPEGRHKIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ  617 (643)
Q Consensus       553 ~La~~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~  617 (643)
                      ++..+-......-+ ...+|.+++-|...++..+..++.+|..+....++....=+ ..+++.|++
T Consensus       349 ~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl-~sLI~~LL~  413 (415)
T PF12460_consen  349 HLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHL-SSLIPRLLK  413 (415)
T ss_pred             HHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHH-HHHHHHHHh
Confidence            88775432222222 35789999999888899999999999999887765443311 234555544

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.41  E-value=8.1  Score=44.71  Aligned_cols=174  Identities=16%  Similarity=0.059  Sum_probs=104.5

Q ss_pred             CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh
Q 040749          457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL  536 (643)
Q Consensus       457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL  536 (643)
                      +-+.++..+...|..+....+.+..+...+++....+.|++.+.-+.-+|...+..||..       -...++|.|.+.-
T Consensus       739 ~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e~Y  811 (982)
T KOG4653|consen  739 DQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSEEY  811 (982)
T ss_pred             CcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHHHH
Confidence            335567788888888877666666677789999999999999988888898888888752       2234567777643


Q ss_pred             cc----CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc
Q 040749          537 EE----RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV  611 (643)
Q Consensus       537 ~~----~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~  611 (643)
                      .+    ...+.+-..=.++.+++. ..+...... +-.+...+..+++.+...|..++++|.++|..........+ ..+
T Consensus       812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~-~ev  889 (982)
T KOG4653|consen  812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF-HEV  889 (982)
T ss_pred             HhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH-HHH
Confidence            32    112222222244444432 111111111 12344555555544455688899999999865432222211 112


Q ss_pred             HHHHHHHh-hcCCHHHHHHHHHHHHHHHh
Q 040749          612 YEHLIQLT-EGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       612 i~~L~~ll-~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ...++.+. .+|+.-+|+.|+-++..+-+
T Consensus       890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~  918 (982)
T KOG4653|consen  890 LQLILSLETTDGSVLVRRAAVHLLAELLN  918 (982)
T ss_pred             HHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence            33334333 36688889999888887654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=84.37  E-value=4.5  Score=45.30  Aligned_cols=128  Identities=17%  Similarity=0.272  Sum_probs=84.9

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhc
Q 040749          489 PPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQ  566 (643)
Q Consensus       489 ~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~  566 (643)
                      ..++...+ |+...+..|+..|..... .++-...     ++..++.+..+.+..++..|+..|..+|.+ ++...    
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~----   95 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS----   95 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH----
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh----
Confidence            34444433 678888888888876654 3444433     466788999889999999999999999985 44433    


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh---cCCHHHHHHHHHHHH
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE---GGTSRAQRKANALLQ  635 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~---~g~~~~k~~A~~lL~  635 (643)
                       .++..|+++|.+.++......-.+|..|...++.        +.+..|+..+.   ++++.+|+++...|+
T Consensus        96 -kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   96 -KVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             -HHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HH--------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence             3566888999988888888888888888887764        35555665554   788888999887664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=84.36  E-value=5.6  Score=47.94  Aligned_cols=45  Identities=24%  Similarity=0.527  Sum_probs=38.0

Q ss_pred             CCccccccCccccc-CceecCCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749          272 PHEFLCPITLEIMR-DPVIIASGQTFERESVQKWFDSNHRTCPKTRQ  317 (643)
Q Consensus       272 ~~~f~CpIc~~~m~-dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~  317 (643)
                      -..+.|+||+++|+ ---+.-|||-||..|+.-|+... ..||.|..
T Consensus      1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~-s~~~~~ks 1196 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYAS-SRCPICKS 1196 (1394)
T ss_pred             hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHh-ccCcchhh
Confidence            34569999999999 55677899999999999999864 47999963

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.18  E-value=23  Score=40.63  Aligned_cols=137  Identities=18%  Similarity=0.236  Sum_probs=80.4

Q ss_pred             CChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-----------CChhhHHHHHHHHHHh
Q 040749          445 GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-----------GTIRGKKDAVTALFNL  513 (643)
Q Consensus       445 g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~A~~aL~nL  513 (643)
                      |.+-.++++|.+++-+++..+....+.|..+          .-+.-++.+|+.           .+...+..-..++...
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvss----------rNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c  386 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSS----------RNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC  386 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhh----------ccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence            3444556677777888888888887777653          234445554431           1223345556666665


Q ss_pred             ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHH
Q 040749          514 SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAV  591 (643)
Q Consensus       514 s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~  591 (643)
                      +..-+.    +.+.+|+.|++++.+.++......+..+...-. .|.-|..     .+..+++-+.. .+....+.|+|+
T Consensus       387 av~Fp~----~aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~Lr~~-----ii~~l~~~~~~irS~ki~rgalwi  457 (948)
T KOG1058|consen  387 AVKFPE----VAATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNLRAS-----IIEKLLETFPQIRSSKICRGALWI  457 (948)
T ss_pred             hhcChH----HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchHHHH-----HHHHHHHhhhhhcccccchhHHHH
Confidence            542221    345678999999988776555444444443322 3433433     33444444432 456778889999


Q ss_pred             HHHHhcCCH
Q 040749          592 LLELGANNS  600 (643)
Q Consensus       592 L~~L~~~~~  600 (643)
                      +..-|....
T Consensus       458 ~GeYce~~~  466 (948)
T KOG1058|consen  458 LGEYCEGLS  466 (948)
T ss_pred             HHHHHhhhH
Confidence            988887655

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=84.05  E-value=0.93  Score=40.08  Aligned_cols=51  Identities=14%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             CccccccCcccccCceec----CCCCccchHHHHHHHhc--CCCCCCCcCcccccCC
Q 040749          273 HEFLCPITLEIMRDPVII----ASGQTFERESVQKWFDS--NHRTCPKTRQTLAHLS  323 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~----~cg~ty~r~~I~~~~~~--~~~~cP~~~~~l~~~~  323 (643)
                      .-+.|-||.|.-.|+..+    .||...|..|-...|+.  -++.||.|+....+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            347899999999998776    38999999999998883  5678999988776543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=83.93  E-value=37  Score=38.20  Aligned_cols=133  Identities=17%  Similarity=0.224  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~  439 (643)
                      ......++..-+ ++...+.-|+..|....++-|+....     +|..++.+...+|..+|..|+..|-.++.+. +...
T Consensus        22 ~~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~   95 (556)
T PF05918_consen   22 EEDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVS   95 (556)
T ss_dssp             HHHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HH
T ss_pred             HHHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHh
Confidence            345555555554 46778888888888888888876544     4668889999999999999999999999863 3444


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---cCChhhHHHHHHHHH
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---NGTIRGKKDAVTALF  511 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~~~~~~~~~A~~aL~  511 (643)
                      .+     .+.|+++|.+.++.-...+-.+|..|-..+       ..+.+..+...+.   +++..+++.++..|.
T Consensus        96 kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d-------~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   96 KV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQD-------PKGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            44     567888888776544444444444442211       1244555555554   566667777776664

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=83.84  E-value=1.2  Score=38.34  Aligned_cols=34  Identities=15%  Similarity=0.353  Sum_probs=27.6

Q ss_pred             CCCCCccccccCcccccCcee--cCCCCccchHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVI--IASGQTFERESVQ  302 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~--~~cg~ty~r~~I~  302 (643)
                      ..+.++-.|++|+..+.+++.  .||||.|...|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            456777889999999987654  3999999999875

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.71  E-value=46  Score=38.35  Aligned_cols=103  Identities=23%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAI  524 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv  524 (643)
                      .|..+..+|.+.++.++..|+.+|..||.++..-+.     +...+++++.. .+-.++.-.+--|..+.   .+... +
T Consensus       244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~---~~~~~-i  314 (948)
T KOG1058|consen  244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELK---ALHEK-I  314 (948)
T ss_pred             HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHh---hhhHH-H
Confidence            455666666666666666666666666654332111     12333444322 22233332222233222   11111 1


Q ss_pred             HcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          525 DAGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       525 ~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      =.|.+--++.+|..++-+++..++.+...|+++
T Consensus       315 l~~l~mDvLrvLss~dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  315 LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHHHHHcCcccccHHHHHHHHHHhhhhh
Confidence            134455566777778888999999888888764

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=83.39  E-value=2.3  Score=27.61  Aligned_cols=30  Identities=20%  Similarity=0.271  Sum_probs=25.9

Q ss_pred             cHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          611 VYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       611 ~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ++|.+++++.+.++++|..|...|..+.++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378999999999999999999999988764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=83.09  E-value=27  Score=36.75  Aligned_cols=44  Identities=20%  Similarity=0.496  Sum_probs=35.8

Q ss_pred             ccccccCccccc-Cc---eecCCCCccchHHHHHHHhc-CCCCCCCcCc
Q 040749          274 EFLCPITLEIMR-DP---VIIASGQTFERESVQKWFDS-NHRTCPKTRQ  317 (643)
Q Consensus       274 ~f~CpIc~~~m~-dP---v~~~cg~ty~r~~I~~~~~~-~~~~cP~~~~  317 (643)
                      ++.|-.|++.+- .|   -.+||.|.|.-+|++.++.. +..+||.|++
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            578999999874 33   34699999999999999974 5678999973

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=83.03  E-value=0.82  Score=38.36  Aligned_cols=27  Identities=15%  Similarity=0.636  Sum_probs=23.5

Q ss_pred             CCCCccchHHHHHHHhcCCCCCCCcCcc
Q 040749          291 ASGQTFERESVQKWFDSNHRTCPKTRQT  318 (643)
Q Consensus       291 ~cg~ty~r~~I~~~~~~~~~~cP~~~~~  318 (643)
                      .|.|.|.-.||.+|++..+ .||.+.+.
T Consensus        80 ~CNHaFH~hCisrWlktr~-vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKTRN-VCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhhcC-cCCCcCcc
Confidence            5889999999999999865 79999764

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.75  E-value=30  Score=40.90  Aligned_cols=134  Identities=19%  Similarity=0.164  Sum_probs=85.3

Q ss_pred             cCCcHHHHHhCCC--------CChHHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHH
Q 040749          403 CGAIPPLVQLLPY--------PDSKILEHAVTAVLNLSI----DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALF  470 (643)
Q Consensus       403 ~g~i~~Lv~lL~~--------~d~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~  470 (643)
                      .|.++.++..|.+        .++.-.+-|+.++++|+.    ....+..+ +.-.++.+.-.++++..-.|..|++++.
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv~hVfP~f~s~~g~Lrarac~vl~  487 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLVNHVFPEFQSPYGYLRARACWVLS  487 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHHHHhhHhhcCchhHHHHHHHHHHH
Confidence            3567777777762        255666788888888873    22333333 4445666666778888889999999999


Q ss_pred             hccccccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHHc---CChHHHHHHhcc
Q 040749          471 SLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAIDA---GIVLPLMNLLEE  538 (643)
Q Consensus       471 ~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~---G~v~~Lv~lL~~  538 (643)
                      ..+..+-. ..-.-..++....+.|. +....++..|+-||..+-++.+....-+++   +.++.|+.+.+.
T Consensus       488 ~~~~~df~-d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne  558 (1010)
T KOG1991|consen  488 QFSSIDFK-DPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNE  558 (1010)
T ss_pred             HHHhccCC-ChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHh
Confidence            99854321 11112345666777776 667789999999999887665544332333   333444444444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=82.68  E-value=31  Score=39.51  Aligned_cols=157  Identities=17%  Similarity=0.099  Sum_probs=91.9

Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHH-hccCChhhHHHHHHHHHHhccCCcchHHHH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDL-LQNGTIRGKKDAVTALFNLSLNQANKARAI  524 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l-L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv  524 (643)
                      +=+.|-+++.+.++-.|...+-++..--.      --++.++|..|+.. ..+.+.++++.|..+|.-++..+++     
T Consensus       520 Ad~lI~el~~dkdpilR~~Gm~t~alAy~------GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~-----  588 (929)
T KOG2062|consen  520 ADPLIKELLRDKDPILRYGGMYTLALAYV------GTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE-----  588 (929)
T ss_pred             hHHHHHHHhcCCchhhhhhhHHHHHHHHh------ccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh-----
Confidence            33344446666667666655544332100      01235678888887 5677899999999999987765554     


Q ss_pred             HcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH-hcCCHHH
Q 040749          525 DAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL-GANNSSF  602 (643)
Q Consensus       525 ~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L-~~~~~~~  602 (643)
                         .++..+++|.+ -++-++--++.+|..-|.....++      ++..|-.++.+...-+|.-|+-++..+ +.+++..
T Consensus       589 ---~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~  659 (929)
T KOG2062|consen  589 ---QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQL  659 (929)
T ss_pred             ---hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccccc
Confidence               34566777765 456666667777776665433332      344444555555556777777777654 3444433


Q ss_pred             HHHHHHCCcHHHHHHHhhcCCH
Q 040749          603 ILAALQYGVYEHLIQLTEGGTS  624 (643)
Q Consensus       603 ~~~~~~~g~i~~L~~ll~~g~~  624 (643)
                      +..+  .+..+.+.+++.+..+
T Consensus       660 ~pkv--~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  660 CPKV--NGFRKQLEKVINDKHE  679 (929)
T ss_pred             CchH--HHHHHHHHHHhhhhhh
Confidence            3322  2344555555555443

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=82.62  E-value=10  Score=35.36  Aligned_cols=143  Identities=18%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             ChHHHHHHhcc--CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh-hHH
Q 040749          487 GIPPLVDLLQN--GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE-GRH  562 (643)
Q Consensus       487 ~i~~Lv~lL~~--~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~-~~~  562 (643)
                      .+..++..|..  .++.++..|..++..+-  +..+....+ -+-..+-..+.+.+.+-...++.++..|=. .++ +..
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            45556666543  56778888888877662  222222111 111222223333334455667777776644 344 344


Q ss_pred             HhhcCCcHHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHH-HHHHHHHHH
Q 040749          563 KIGQLSFIETLVEYIR--EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSR-AQRKANALL  634 (643)
Q Consensus       563 ~i~~~g~i~~Lv~lL~--~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~-~k~~A~~lL  634 (643)
                      .+...|+++.++.++.  ..+...+..++.+|..=|. +. .+...+...+++.|..+..++ ++. +|..|.-.|
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~-~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DK-SCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SH-HHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cH-HHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence            5566899999999999  5666777777777755554 43 344444455799999999655 455 566555444

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=82.59  E-value=9  Score=30.66  Aligned_cols=66  Identities=14%  Similarity=0.121  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHHCC
Q 040749          544 VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSSFILAALQYG  610 (643)
Q Consensus       544 ~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g  610 (643)
                      ...|++++.++++++.|...+.+.++++.++++.... ....|--|..+|..+++ ..+.+..+.+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            4678999999999999999888889999999999854 47789999999987765 444444444444

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.45  E-value=13  Score=45.80  Aligned_cols=258  Identities=16%  Similarity=0.134  Sum_probs=124.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHH-HHHH---HhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHH---hcCCcc
Q 040749          364 IVSLVEQLSSSKLEVQKEAV-RKIR---LLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN---LSIDES  436 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~-~~L~---~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~n---Ls~~~~  436 (643)
                      ...+...+.++++..|..++ |-|.   .+++ .++..-  ........+..+|...|+-+|..|..-|+-   |+ +..
T Consensus       820 ~~~l~~~~~s~nph~R~A~~VWLLs~vq~l~~-~~~v~l--~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelg-d~~  895 (1702)
T KOG0915|consen  820 LKLLDTLLTSPNPHERQAGCVWLLSLVQYLGQ-QPEVVL--MLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELG-DSS  895 (1702)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcc-Cchhhh--ccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecC-Cch
Confidence            44555666788888776443 3222   2221 122111  111223677788888777777777655432   22 222


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCH-------HH---------------HHHHHHHHHhccccccchhhhhccCChHHHHHH
Q 040749          437 NKRLIAQQGAIPAIIEILQSGST-------EA---------------RENSAAALFSLSMLDENKITIGLSDGIPPLVDL  494 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~-------e~---------------~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~l  494 (643)
                      .|..+     +..|++-|..|..       ++               ....-.=|++|++      .++.+..|-.+.+|
T Consensus       896 ~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LAS------dl~qPdLVYKFM~L  964 (1702)
T KOG0915|consen  896 LKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLAS------DLGQPDLVYKFMQL  964 (1702)
T ss_pred             hHHHH-----HHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHh------hcCChHHHHHHHHH
Confidence            23333     3334443332211       00               1111112333322      12334445555555


Q ss_pred             hccC-ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHH
Q 040749          495 LQNG-TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETL  573 (643)
Q Consensus       495 L~~~-~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L  573 (643)
                      -++. .+..++-|+--+..|+.....+.+=--...||.|...=.+++..++.....+=..|..++.....-.-...+.-|
T Consensus       965 Anh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eL 1044 (1702)
T KOG0915|consen  965 ANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDEL 1044 (1702)
T ss_pred             hhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            5443 345555555545545433322211111335677777666788777766555555555543221111112455555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHhcCCHHH--HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          574 VEYIREGTPKNKECATAVLLELGANNSSF--ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       574 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~--~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      +.-+.+..-++|+.++.+|..|-.+.+..  ...+  ...-..+++.+.+--+-+|+.|-.+.+.+.
T Consensus      1045 L~~lt~kewRVReasclAL~dLl~g~~~~~~~e~l--pelw~~~fRvmDDIKEsVR~aa~~~~~~ls 1109 (1702)
T KOG0915|consen 1045 LVNLTSKEWRVREASCLALADLLQGRPFDQVKEKL--PELWEAAFRVMDDIKESVREAADKAARALS 1109 (1702)
T ss_pred             HHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555666789999999999998765421  1111  123334445555444555555544444443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=82.39  E-value=11  Score=42.67  Aligned_cols=254  Identities=12%  Similarity=0.114  Sum_probs=146.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcC
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQG  445 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g  445 (643)
                      .++..|.-.+.+.+.+-...|..-   .+..-..++..-.+|.|+..+..++  .-.+.+..+..+...-+...  ...+
T Consensus       258 ~fLeel~lks~~eK~~Ff~~L~~~---l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~e--yq~~  330 (690)
T KOG1243|consen  258 LFLEELRLKSVEEKQKFFSGLIDR---LDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEE--YQVR  330 (690)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccc--cccc
Confidence            344445555666666555555442   2334445666667888888887766  23444555555544211111  4677


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID  525 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~  525 (643)
                      .+|.|+++++..+..+|..-+.-+-..  .+..-..+.+...+|.+..-+.+.++..+...+.++..|+..=.-+  .+.
T Consensus       331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~--i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln  406 (690)
T KOG1243|consen  331 IIPVLLKLFKSPDRQIRLLLLQYIEKY--IDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLN  406 (690)
T ss_pred             hhhhHHHHhcCcchHHHHHHHHhHHHH--hhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhc
Confidence            899999999998877775433222211  1223345667788999999999999999999988888776311111  111


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc-HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH
Q 040749          526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF-IETLVEYIREGTPKNKECATAVLLELGANNSSFIL  604 (643)
Q Consensus       526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~-i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~  604 (643)
                      ...+..+..+=.+.+..++....-+|..++.+-..   ....++ +....+-+++.-+..|..++.+|+..+..-+..-.
T Consensus       407 ~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~---~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~v  483 (690)
T KOG1243|consen  407 GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAA---SVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEV  483 (690)
T ss_pred             HHHHHHHHhhCccccCcccccceeeecccccccch---hhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhh
Confidence            11222222222234556666666666666554211   112222 33344445555566788888888777654332111


Q ss_pred             HHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHH
Q 040749          605 AALQYGVYEHLIQLTEGGTSRAQRKANALLQL  636 (643)
Q Consensus       605 ~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~  636 (643)
                         ...+++.+.-+..+.+.-++..|-..++-
T Consensus       484 ---a~kIlp~l~pl~vd~e~~vr~~a~~~i~~  512 (690)
T KOG1243|consen  484 ---ANKILPSLVPLTVDPEKTVRDTAEKAIRQ  512 (690)
T ss_pred             ---hhhccccccccccCcccchhhHHHHHHHH
Confidence               23467777777777777777777666553

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=82.31  E-value=13  Score=34.03  Aligned_cols=74  Identities=15%  Similarity=0.119  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI  433 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~  433 (643)
                      .+.++..+.+.|.++++.+|..|+..|..+.++ .......++..+++..|++++. ..++.++..++..+.+.+.
T Consensus        39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999976 4557778888899999999887 4578899999999988874

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=81.49  E-value=15  Score=37.39  Aligned_cols=169  Identities=15%  Similarity=0.148  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHhcCCcchHHHHHhcC--ChHHHHHHhcC----CCHHHHHHHHHHHHhccccccchhhhhcc-C-ChHHHH
Q 040749          421 LEHAVTAVLNLSIDESNKRLIAQQG--AIPAIIEILQS----GSTEARENSAAALFSLSMLDENKITIGLS-D-GIPPLV  492 (643)
Q Consensus       421 ~~~a~~~L~nLs~~~~~k~~i~~~g--~i~~Lv~lL~~----~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g-~i~~Lv  492 (643)
                      +--++..+.-+..++..-..+...+  ....+..++..    ..+-.+.-+++++.|+-.....+..+... + .+...+
T Consensus        80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~  159 (268)
T PF08324_consen   80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL  159 (268)
T ss_dssp             -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred             chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence            4445555655555665555554222  24444554433    35778888999999999888887777653 3 444444


Q ss_pred             HHhccC----ChhhHHHHHHHHHHhccCCc-ch-HHHHHcCChHHHHHHhc-c-CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749          493 DLLQNG----TIRGKKDAVTALFNLSLNQA-NK-ARAIDAGIVLPLMNLLE-E-RNLGMVDEALSILLLLATHPEGRHKI  564 (643)
Q Consensus       493 ~lL~~~----~~~~~~~A~~aL~nLs~~~~-n~-~~lv~~G~v~~Lv~lL~-~-~~~~~~~~Al~~L~~La~~~~~~~~i  564 (643)
                      ..+...    +..++..+++.++|++..-. ++ ..-....++..+++.+. . .+++..-.++.+|++|...+......
T Consensus       160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~~~~~  239 (268)
T PF08324_consen  160 SSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDSAKQL  239 (268)
T ss_dssp             HCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChhHHHH
Confidence            444443    56778888999999974211 11 11111123455566332 2 68889999999999999876666665


Q ss_pred             hcC-CcHHHHHHHHh-cCChHHHHHHH
Q 040749          565 GQL-SFIETLVEYIR-EGTPKNKECAT  589 (643)
Q Consensus       565 ~~~-g~i~~Lv~lL~-~~s~~~~e~A~  589 (643)
                      ... |+-..+...-. ...++.++.+.
T Consensus       240 ~~~l~~~~~~~~~~~~~~e~ri~~v~~  266 (268)
T PF08324_consen  240 AKSLDVKSVLSKKANKSKEPRIKEVAA  266 (268)
T ss_dssp             CCCCTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHcChHHHHHHHHhcccchHHHHHhc
Confidence            553 44444333333 34566666554

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=81.31  E-value=0.53  Score=45.58  Aligned_cols=49  Identities=18%  Similarity=0.333  Sum_probs=37.2

Q ss_pred             CccccccCccc-ccCce--e--cC-CCCccchHHHHHHHhcCCCCCC--CcCccccc
Q 040749          273 HEFLCPITLEI-MRDPV--I--IA-SGQTFERESVQKWFDSNHRTCP--KTRQTLAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~-m~dPv--~--~~-cg~ty~r~~I~~~~~~~~~~cP--~~~~~l~~  321 (643)
                      .+-.||+|..- +-+|-  +  -| |-|..|-+|..+.|..|...||  -|+..|..
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK   65 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRK   65 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHH
Confidence            35689999753 34552  2  25 9999999999999999999999  67665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.66  E-value=1.3  Score=50.66  Aligned_cols=44  Identities=16%  Similarity=0.355  Sum_probs=35.9

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCc
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQ  317 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~  317 (643)
                      .+-..-.|..|.-.+.=|++- .|||.|.+.|.+    .+...||.|..
T Consensus       836 ~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  836 QIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             ceeeeeeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            344446899999999999775 899999999998    45678999965

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=80.62  E-value=2.3  Score=45.77  Aligned_cols=178  Identities=17%  Similarity=0.051  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHhcCCcchHH-HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-----cc---chhhhhccCChHH
Q 040749          420 ILEHAVTAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-----DE---NKITIGLSDGIPP  490 (643)
Q Consensus       420 ~~~~a~~~L~nLs~~~~~k~-~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-----~~---~k~~i~~~g~i~~  490 (643)
                      ++..|++++.-+..++..+. .+.-..+...++..|.+..-..++.++|++.+++.-     +.   ....+. .-.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~s-g~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFS-GLLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHH-HHHHHH
Confidence            44556666665555665543 333456677777777776777899999999998731     11   111110 011222


Q ss_pred             HHHHhc---cCChhhHHHHHHHHHHhccCCc----chHHHHHcCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHH
Q 040749          491 LVDLLQ---NGTIRGKKDAVTALFNLSLNQA----NKARAIDAGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRH  562 (643)
Q Consensus       491 Lv~lL~---~~~~~~~~~A~~aL~nLs~~~~----n~~~lv~~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~  562 (643)
                      ++.+-.   ..+.+++.+|.++|.|+...-.    -.-..+..|.+..+..- .......++.+|+.++.||-+++.-.-
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~l  565 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPL  565 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccc
Confidence            222221   2356888899999999874211    01111122222222221 122456789999999999999875432


Q ss_pred             Hh--hcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcC
Q 040749          563 KI--GQLSFIETLVEYIRE-GTPKNKECATAVLLELGAN  598 (643)
Q Consensus       563 ~i--~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~  598 (643)
                      +=  ....+++.|..++.+ .+=++|.+|+++|..-...
T Consensus       566 q~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~r  604 (728)
T KOG4535|consen  566 QTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGKR  604 (728)
T ss_pred             cCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCCc
Confidence            21  223457788888865 4567889999998776543

>PRK14707 hypothetical protein; Provisional

Probab=80.56  E-value=92  Score=40.35  Aligned_cols=256  Identities=18%  Similarity=0.127  Sum_probs=130.6

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHH
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEI  453 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~l  453 (643)
                      +.+.+..+......++ .++..|..+ ...+|..+++-++ -++.....+|+..|...-.++.....-++...+...+..
T Consensus       178 ~~~c~~aa~~la~~~~-~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~~~~~q~va~~lN~  255 (2710)
T PRK14707        178 NPDCQAVAPRFAALVA-SDDRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRNELKPQELGNALNA  255 (2710)
T ss_pred             CchHHHHHHHHHHHhc-CChhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHHhCChHHHHHHHHH
Confidence            3333333333333333 333444333 3334555555444 345444555666665544444443333355566666666


Q ss_pred             hcC-CCHHHHHHHHHHHH-hccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHH-hccCCcchHHHHHcCChH
Q 040749          454 LQS-GSTEARENSAAALF-SLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN-LSLNQANKARAIDAGIVL  530 (643)
Q Consensus       454 L~~-~~~e~~~~Aa~~L~-~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~lv~~G~v~  530 (643)
                      |.. .+.....+|+..|. .|+.+...+..+...++-..|-.+-+-.+..+...|+..|.. |...++-+ +-.+.-.+.
T Consensus       256 lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~-~~~~~~~~~  334 (2710)
T PRK14707        256 LSKWADTPVCAAAASALAERLVDDPGLRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELC-KALNARGLS  334 (2710)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhh-hccchHHHH
Confidence            643 33334444444444 455444444444333333333333344556666666666653 44433333 334444455


Q ss_pred             HHHHHhcc-CChhh-HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749          531 PLMNLLEE-RNLGM-VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSSFILAAL  607 (643)
Q Consensus       531 ~Lv~lL~~-~~~~~-~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~  607 (643)
                      .+++-|+. ++..+ ...|..+-..|+.+++.++.+-- -++..++.-+.. .+......|+..|..=..++++....+-
T Consensus       335 ~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~-q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~  413 (2710)
T PRK14707        335 TALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP-QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD  413 (2710)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch-hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc
Confidence            55666654 44444 44555555677778777776643 345555555553 3344555666666554456666666665


Q ss_pred             HCCcHHHHHHHhhcCCHHHHHHHHHHH
Q 040749          608 QYGVYEHLIQLTEGGTSRAQRKANALL  634 (643)
Q Consensus       608 ~~g~i~~L~~ll~~g~~~~k~~A~~lL  634 (643)
                      -.|+-..|-.+.+=.+..+-..|...|
T Consensus       414 ~Q~van~lnalsKWPd~~~C~~aa~~l  440 (2710)
T PRK14707        414 PQGVSNALNALAKWPDLPICGQAVSAL  440 (2710)
T ss_pred             hhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence            566666666666655555555555444

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.30  E-value=7.1  Score=46.66  Aligned_cols=139  Identities=24%  Similarity=0.203  Sum_probs=102.3

Q ss_pred             CcHHHHHhCCC----CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccch
Q 040749          405 AIPPLVQLLPY----PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENK  479 (643)
Q Consensus       405 ~i~~Lv~lL~~----~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k  479 (643)
                      +.|.++...+.    .|+++|..|.-+|+.+..-+..-    -...+|.++.++. ++++.+|.|+..+++.|+..-.+ 
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ces~l~llftimeksp~p~IRsN~VvalgDlav~fpn-  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN-  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhcCCCceeeecchheccchhhhccc-
Confidence            56777777643    47899999999998876432221    1235788999887 77899999999999888753222 


Q ss_pred             hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          480 ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       480 ~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                        +. ...-+.|...|++.++.+++.|...|.+|-.++     |++ .|.++.+...|.++++.+.+-|=..+..|+.
T Consensus       995 --li-e~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd-----miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  995 --LI-EPWTEHLYRRLRDESPSVRKTALLVLSHLILND-----MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             --cc-chhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh-----hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence              11 223466777788999999999999999997643     344 6889999999999998888887766666654

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=80.30  E-value=72  Score=33.60  Aligned_cols=158  Identities=16%  Similarity=0.094  Sum_probs=111.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhc-cCchhHHHHHh-cC-CcHHHHHhCCCC-----C--------hHHHHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSK-ENPENRILIAD-CG-AIPPLVQLLPYP-----D--------SKILEHAVT  426 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~-~~~~~r~~i~~-~g-~i~~Lv~lL~~~-----d--------~~~~~~a~~  426 (643)
                      ..+.+.+.|++.....+..+++-|..++. .+......+.. -+ -.+.|.+++...     +        +.+|.+.+.
T Consensus        57 ~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   57 HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            47788888998888888888999998887 55455444444 33 234555665421     1        278888888


Q ss_pred             HHHHhcC--CcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHh-ccccc----cchhhhhccCChHHHHHHhccC
Q 040749          427 AVLNLSI--DESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFS-LSMLD----ENKITIGLSDGIPPLVDLLQNG  498 (643)
Q Consensus       427 ~L~nLs~--~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~~----~~k~~i~~~g~i~~Lv~lL~~~  498 (643)
                      .+..+..  ++..+..+. ..+.+..+.+-|..+++++......+|.. +..++    ..|..+.+..++..|+.+....
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~  216 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRD  216 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhccc
Confidence            7777765  334466666 55678888888888889999988888884 43332    3456677788899999987766


Q ss_pred             Ch----hhHHHHHHHHHHhccCCcch
Q 040749          499 TI----RGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       499 ~~----~~~~~A~~aL~nLs~~~~n~  520 (643)
                      .+    .+...+-..|..+|.++.+-
T Consensus       217 ~~~~~~~~~~~vh~fL~~lcT~p~~G  242 (330)
T PF11707_consen  217 GEDEKSSVADLVHEFLLALCTDPKHG  242 (330)
T ss_pred             CCcccchHHHHHHHHHHHHhcCCCcc
Confidence            55    77777888888888765543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	643
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		8e-24
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		2e-11
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-10
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		3e-09
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		3e-09
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		4e-08
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		2e-05
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		3e-05
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		3e-05
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		3e-05
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		3e-05
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		3e-05
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		3e-05
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		3e-05
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		4e-05
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-05
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		4e-05
1ial_A	453	Importin Alpha, Mouse Length = 453		4e-05
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		4e-05
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		4e-05
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		4e-05
2yns_A	490	Rimp_alpha_b54nls Length = 490		9e-05
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		9e-05
4b8j_A	528	Rimp_alpha1a Length = 528		1e-04
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-04
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		5e-04
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		1e-04
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		2e-04
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		2e-04
3ifq_A	553	Interction Of Plakoglobin And Beta-Catenin With Des		3e-04
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-04
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		4e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-04
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		6e-04
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		6e-04
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-04
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		6e-04
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		8e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 41/73 (56%), Positives = 57/73 (78%)
Query: 272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALK 331
           P  F CPI+LE+M+DPVI+++GQT+ER S+QKW D+ H+TCPK+++TL H  + PNY LK
Sbjct: 6   PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 332 NLILQWCEKNNFK 344
           +LI  WCE N  +
Sbjct: 66  SLIALWCESNGIE 78

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/198 (30%), Positives = 113/198 (57%), Gaps = 5/198 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
           E+  + +QL+S  ++ Q  A RK  ++LS  N + + +I D GA+P LVQLL  P+ +IL
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQIL 71
Query: 422 EHAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480
           + A+ A+ N++   + + + +   GA+PA++++L S + +  + +  AL +++     +I
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 481 TIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEE 538
              +  G +P LV LL +   +  ++A+ AL N++     + +A IDAG +  L+ LL  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 191
Query: 539 RNLGMVDEALSILLLLAT 556
            N  ++ EAL  L  +A+
Sbjct: 192 PNEQILQEALWALSNIAS 209

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/199 (28%), Positives = 109/199 (54%), Gaps = 5/199 (2%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKI-RLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
           E+  + +QL+S  ++ Q  A RK  ++LS  N + + +I D GA+P LVQLL  P+ +IL
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVI-DAGALPALVQLLSSPNEQIL 71
Query: 422 EHAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI 480
           + A+ A+ N++   + + + +   GA+PA++++L S + +  + +  AL +++     +I
Sbjct: 72  QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 131
Query: 481 TIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEE 538
              +  G +P LV LL +   +  ++A+ AL N++     + +A+ +AG +  L  L   
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH 191
Query: 539 RNLGMVDEALSILLLLATH 557
            N  +  EA   L  L +H
Sbjct: 192 ENEKIQKEAQEALEKLQSH 210

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 343 FKLPKKDDSETSECTAEQKEEIVS-----------------LVEQLSSSKLEVQKEAVRK 385
            KL    DSET +  A    EI S                 LV+ L+S+  EVQKEA R 
Sbjct: 8   VKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARA 67
Query: 386 IRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DESNKRLIAQ 443
           +  ++    E    I D G +  LV+LL   DS++ + A  A+ N++   DE+ K ++  
Sbjct: 68  LANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV-D 126
Query: 444 QGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVDLLQNGTIRG 502
            G +  ++++L S  +E ++ +A AL ++ S  DE    I  + G+  LV LL +     
Sbjct: 127 AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEV 186
Query: 503 KKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLL 536
           +K+A  AL N++    +  +AI DAG V  L  LL
Sbjct: 187 QKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 106/198 (53%), Gaps = 3/198 (1%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           E+  +V+QL+S   +  + A+RK+  ++    E    + D GA+P LVQLL  P+ +IL+
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 423 HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT 481
            A+ A+ N++   + + + +   GA+PA++++L S + +  + +  AL +++     +I 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 482 IGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEER 539
             +  G +P LV LL +   +  ++A+ AL N++     + +A+ +AG +  L  L    
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE 192
Query: 540 NLGMVDEALSILLLLATH 557
           N  +  EA   L  L +H
Sbjct: 193 NEKIQKEAQEALEKLQSH 210

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 105/198 (53%), Gaps = 3/198 (1%)
Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           E+  +V+QL+S   +  + A+RK+  ++    E    + D GA+P LVQLL  P+ +IL+
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72
Query: 423 HAVTAVLNLSIDESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT 481
            A+ A+ N++   + + + +   GA+PA++++L S + +  + +  AL +++     +I 
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 482 IGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEER 539
             +  G +P LV LL +   +  ++A+ AL N++     + +A+ +AG    L  L    
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAEPALEQLQSSP 192
Query: 540 NLGMVDEALSILLLLATH 557
           N  +  EA   L  + +H
Sbjct: 193 NEKIQKEAQEALEKIQSH 210

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 104/216 (48%), Gaps = 11/216 (5%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L     EV  +    I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 187 TLVRLLHHDDPEVLADTCWAISYLT-DGPNERIGMVVKTGVVPQLVKLLGASELPIVTPA 245
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  + +I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 246 LRAIGNIVTGTDEQTQVVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 304
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+AV A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 305 VVNHGLVPFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAK 364
Query: 540 NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE 575
           +  ++   L IL  ++   +   K+G+   +  ++E
Sbjct: 365 DTKII---LVILDAISNIFQAAEKLGETEKLSIMIE 397

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 240 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Query: 540 NLGMV 544
           +  ++
Sbjct: 359 DTKII 363

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
           +  ++
Sbjct: 364 DTKII 368

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 181 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 239
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 240 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 298
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 299 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 358
Query: 540 NLGMV 544
           +  ++
Sbjct: 359 DTKII 363

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 220 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 278
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 279 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 337
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 338 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 397
Query: 540 NLGMV 544
           +  ++
Sbjct: 398 DTKII 402

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 244 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Query: 540 NLGMV 544
           +  ++
Sbjct: 363 DTKII 367

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 222 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 280
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 281 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 339
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 340 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 399
Query: 540 NLGMV 544
           +  ++
Sbjct: 400 DTKII 404

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
           +  ++
Sbjct: 364 DTKII 368

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 186 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 244
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 245 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 303
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 304 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 363
Query: 540 NLGMV 544
           +  ++
Sbjct: 364 DTKII 368

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 192 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 251 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 309
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 310 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 369
Query: 540 NLGMV 544
           +  ++
Sbjct: 370 DTKII 374

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 185 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 243
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 244 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 302
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 303 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 362
Query: 540 NLGMV 544
           +  ++
Sbjct: 363 DTKII 367

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 212 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 270
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 271 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 329
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 330 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 389
Query: 540 NLGMV 544
           +  ++
Sbjct: 390 DTKII 394

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
           +  ++
Sbjct: 414 DTKII 418

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
           +  ++
Sbjct: 414 DTKII 418

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 92/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 294
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 295 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K+A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 354 VVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413
Query: 540 NLGMV 544
           +  ++
Sbjct: 414 DTKII 418

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
           +L   + S+  EV  +A   +  LS    +    + + G  P LV+LL +P   +L  A+
Sbjct: 210 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 269
Query: 426 TAVLNL-SIDESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIG 483
             V N+ + D++  + I    A+P ++ +L Q+     ++ +   + +++  ++++I   
Sbjct: 270 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 329
Query: 484 LSDGI-PPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLL 536
           ++ GI  PLV+LLQ      KK+A  A+ N +   ++      +  G + PL +LL
Sbjct: 330 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 385

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 91/185 (49%), Gaps = 8/185 (4%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHA 424
           +LV  L  +  EV  ++   I  L+ + P  RI ++   G +P LV+LL   +  I+  A
Sbjct: 255 TLVRLLHHNDPEVLADSCWAISYLT-DGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 313
Query: 425 VTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           + A+ N+    DE  +++I   GA+     +L +  T  ++ +   + +++   +++I  
Sbjct: 314 LRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 372
Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLLEER 539
            ++ G +P LV +L     + +K A  A+ N +     +     +  GI+ PLMNLL  +
Sbjct: 373 VVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432
Query: 540 NLGMV 544
           +  ++
Sbjct: 433 DTKII 437

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 5/176 (2%)
Query: 366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAV 425
           +L   + S+  EV  +A   +  LS    +    + + G  P LV+LL +P   +L  A+
Sbjct: 248 ALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPAL 307
Query: 426 TAVLNL-SIDESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIG 483
             V N+ + D++  + I    A+P ++ +L Q+     ++ +   + +++  ++++I   
Sbjct: 308 RTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV 367
Query: 484 LSDGI-PPLVDLLQNGTIRGKKDAVTALFNLSLNQANK--ARAIDAGIVLPLMNLL 536
           ++ GI  PLV+LLQ      KK+A  A+ N +   ++      +  G + PL +LL
Sbjct: 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLL 423

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 78/148 (52%), Gaps = 13/148 (8%)
Query: 339 EKNNFKLPK----KDDSETSECTAEQK------EEIVSLVEQLSSSKLEVQKEAVRKIR- 387
           ++ NF  P      D+ + S  +A+Q+      +E+  + +QL+S  ++ Q  A  K R 
Sbjct: 54  KRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQ 113
Query: 388 LLSKENPENRILIADCGAIPPLVQLLPYPDSKILE-HAVTAVLNLSIDESNK-RLIAQQG 445
           +LS+E+     ++   G +P LV+ +     ++L+  A  A+ N++   S + +++    
Sbjct: 114 ILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD 173
Query: 446 AIPAIIEILQSGSTEARENSAAALFSLS 473
           A+P  I++L +GS E +E +  AL +++
Sbjct: 174 AVPLFIQLLYTGSVEVKEQAIWALGNVA 201

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 350 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 462
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 463 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 496

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 271 IPHEFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
           IP ++LC  I+ E+MR+P I  SG T++R+ +++         P TR  L    + PN A
Sbjct: 103 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161
Query: 330 LKNLILQWCEKNNF 343
           +K +I  + ++N +
Sbjct: 162 MKEVIDAFIQENGW 175

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHA 424
           ++E + S   E Q  A +K R LLSKE NP    +I+  G +   V+ L   ++  L+  
Sbjct: 25  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 84
Query: 425 VTAVL-NLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL----SMLDEN 478
              VL N++   S   R++ Q GA+P  IE+L S   + +E +  AL ++    +M  + 
Sbjct: 85  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 144
Query: 479 KITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536
            +   +   +PPL+ L  +   +   ++AV AL NL      K+   +   V P +N+L
Sbjct: 145 VLDCNI---LPPLLQLFSKQNRLTMTRNAVWALSNLC---RGKSPPPEFAKVSPCLNVL 197

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 15/179 (8%)
Query: 367 LVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCGAIPPLVQLLPYPDSKILEHA 424
           ++E + S   E Q  A +K R LLSKE NP    +I+  G +   V+ L   ++  L+  
Sbjct: 22  MIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFE 81
Query: 425 VTAVL-NLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL----SMLDEN 478
              VL N++   S   R++ Q GA+P  IE+L S   + +E +  AL ++    +M  + 
Sbjct: 82  SAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDY 141
Query: 479 KITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536
            +   +   +PPL+ L  +   +   ++AV AL NL      K+   +   V P +N+L
Sbjct: 142 VLDCNI---LPPLLQLFSKQNRLTMTRNAVWALSNLC---RGKSPPPEFAKVSPCLNVL 194

>pdb|3IFQ|A Chain A, Interction Of Plakoglobin And Beta-Catenin With Desmosomal Cadherins Length = 553

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 99/221 (44%), Gaps = 29/221 (13%)
Query: 372 SSSKLEVQKEAVRKIRLLSKENPENRIL---IADCGAIPPLVQLLPYPDSKILEHAVTAV 428
           +  K ++ + AV  +R L+  +PE  +    +     IP +V+LL  P+   L  A   +
Sbjct: 322 AGDKDDITEPAVCALRHLTSRHPEAEMAQNSVRLNYGIPAIVKLLNQPNQWPLVKATIGL 381
Query: 429 L-NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAA-------------------- 467
           + NL++  +N   + +   IP ++++L     +A+ + AA                    
Sbjct: 382 IRNLALCPANHAPLQEAAVIPRLVQLLVKAHQDAQRHVAAGTQQPYTDGVRMEEIVEGCT 441
Query: 468 -ALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
            AL  L+    N++ I   + IP  V LL +     ++ A   L  L+ ++   A AIDA
Sbjct: 442 GALHILARDPMNRMEIFRLNTIPLFVQLLYSSVENIQRVAAGVLCELAQDK-EAADAIDA 500
Query: 527 -GIVLPLMNLLEERNLGMVDEALSILLLLA--THPEGRHKI 564
            G   PLM LL  RN G    A ++L  ++   +P+ R ++
Sbjct: 501 EGASAPLMELLHSRNEGTATYAAAVLFRISEDKNPDYRKRV 541

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 274 EFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKN 332
           ++LC  I+ E+MR+P I  SG T++R+ +++         P TR  L    + PN A+K 
Sbjct: 4   DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKE 63
Query: 333 LILQWCEKNNF 343
           +I  +  +N +
Sbjct: 64  VIDAFISENGW 74

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN I +G +D
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENIIKMGEAD 374
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 408

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 271 IPHEFLC-PITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
           IP ++LC  I+ E+MR+P I  SG T++R+ +++         P TR  L    + PN A
Sbjct: 205 IP-DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 263
Query: 330 LKNLILQWCEKNNF 343
           +K +I  +  +N +
Sbjct: 264 MKEVIDAFISENGW 277

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 376
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 410

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 375
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 409

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 263 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 322
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 323 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 375
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 376 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 409

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 264 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISN 323
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 324 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 376
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 377 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 410

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 68/154 (44%), Gaps = 11/154 (7%)
Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           LSS K  ++KEA   I  ++  N E    + D   IPPLV+LL   + K  + A  A+ N
Sbjct: 262 LSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 321
Query: 431 LSIDESNK----RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD 486
            S     +    R +  QG I  + ++L+       E +  AL       EN + +G +D
Sbjct: 322 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL-------ENILKMGEAD 374
Query: 487 GIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK 520
                +++ +N     K   +  +FN   N+ +K
Sbjct: 375 KEARGLNINENADFIEKAGGMEKIFNCQQNENDK 408

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	643
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-64
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-60
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	9e-50
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-44
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-42
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	8e-18
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-50
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-44
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-42
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-17
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-58
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-45
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-42
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-40
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-30
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-57
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-32
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-29
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	2e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	9e-52
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-41
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-31
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-29
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	3e-14
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-37
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-36
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-29
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-25
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-46
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-32
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	4e-25
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	3e-41
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	4e-40
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	4e-39
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-28
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-25
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-22
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-22
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	7e-13
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-38
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	8e-35
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-19
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-34
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-19
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-15
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-14
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-32
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-21
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	2e-19
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-05
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-30
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	2e-29
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-28
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-27
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-28
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-27
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	8e-15
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	3e-27
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	5e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-19
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-13
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	5e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-10
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	6e-14
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	3e-11
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-10
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-09
3grl_A	651	General vesicular transport factor P115; vesicle t	2e-09
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	2e-09
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-09
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	7e-09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-08
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-07
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-07
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-07
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	6e-07
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	7e-07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	8e-07
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	2e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	3e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-06
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	6e-06
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	7e-06
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	8e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	1e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	5e-05
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	1e-04
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	2e-04
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	3e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-04
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	3e-04
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	6e-04
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	9e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  211 bits (539), Expect = 3e-64
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 4/249 (1%)

Query: 354 SECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL 413
           S        E+  + +QL+S  ++ Q  A RK   +  +  E    + D GA+P LVQLL
Sbjct: 4   SHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63

Query: 414 PYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL 472
             P+ +IL+ A+ A+ N++       + +   GA+PA++++L S + +  + +  AL ++
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 473 SML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVL 530
           +   +E    +  +  +P LV LL +   +  ++A+ AL N++     + +A+ DAG + 
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALP 183

Query: 531 PLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589
            L+ LL   N  ++ EAL  L  +A+   E +  + +   +E L +       K ++ A 
Sbjct: 184 ALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQ 243

Query: 590 AVLLELGAN 598
             L +L ++
Sbjct: 244 EALEKLQSH 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  107 bits (269), Expect = 2e-26
 Identities = 41/209 (19%), Positives = 85/209 (40%), Gaps = 3/209 (1%)

Query: 435 ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENKITIGLSDGIPPLVD 493
             +         +P + + L S   + + ++      + S  +E    +  +  +P LV 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61

Query: 494 LLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEERNLGMVDEALSILL 552
           LL +   +  ++A+ AL N++     + +A+ DAG +  L+ LL   N  ++ EAL  L 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 553 LLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV 611
            +A+   E    +     +  LV+ +     +  + A   L  + +  +  I A +  G 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 181

Query: 612 YEHLIQLTEGGTSRAQRKANALLQLISKS 640
              L+QL      +  ++A   L  I+  
Sbjct: 182 LPALVQLLSSPNEQILQEALWALSNIASG 210

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  210 bits (537), Expect = 8e-60
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 7/277 (2%)

Query: 364 IVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           + ++V  + ++  +E  +     +  LS  + E  + I   G IP LV++L  P   +L 
Sbjct: 58  VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLF 116

Query: 423 HAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKI 480
           +A+T + NL +  E  K  +   G +  ++ +L   + +    +   L  L+  + E+K+
Sbjct: 117 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 176

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKK-DAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER 539
            I  S G   LV++++  T           L  LS+  +NK   ++AG +  L   L + 
Sbjct: 177 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 236

Query: 540 NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599
           +  +V   L  L  L+       + G    + TLV+ +         CA  +L  L  NN
Sbjct: 237 SQRLVQNCLWTLRNLSDAA--TKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

Query: 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636
               +   Q G  E L++       R      A+  L
Sbjct: 295 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  182 bits (464), Expect = 9e-50
 Identities = 49/293 (16%), Positives = 109/293 (37%), Gaps = 13/293 (4%)

Query: 359 EQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQL 412
            Q +  ++      L + L+     V  +A   +  LSK+      ++     +  +V+ 
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 413 LPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFS 471
           +    D +        + NLS        I + G IPA++++L S        +   L +
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 472 LSMLDEN-KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIV 529
           L +  E  K+ + L+ G+  +V LL    ++        L  L+  NQ +K   + +G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 530 LPLMNLLEERNL-GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECA 588
             L+N++       ++     +L +L+     +  I +   ++ L  ++ + + +  +  
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244

Query: 589 TAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641
              L  L    +         G+   L+QL           A  +L  ++ + 
Sbjct: 245 LWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  168 bits (426), Expect = 1e-44
 Identities = 66/323 (20%), Positives = 123/323 (38%), Gaps = 27/323 (8%)

Query: 345 LPKKDDSETSECTA----------EQKEEIVS------LVEQLSSSKLEVQKEAVRKIRL 388
           +   +D ET+ CTA          E    I        LV+ L S    V   A+  +  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 389 LSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLS-IDESNKRLIAQQGAI 447
           L       ++ +   G +  +V LL   + K L      +  L+  ++ +K +I   G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 448 PAIIEILQSGSTEA-RENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDA 506
            A++ I+++ + E     ++  L  LS+   NK  I  + G+  L   L + + R  ++ 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 244

Query: 507 VTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIG 565
           +  L NLS   A   +    G++  L+ LL   ++ +V  A  IL  L  +  + +  + 
Sbjct: 245 LWTLRNLS--DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302

Query: 566 QLSFIETLVEYIREGTPKN--KECATAVLLEL---GANNSSFILAALQYGVYEHLIQLTE 620
           Q+  IE LV  +     +    E A   L  L            A   +     +++L  
Sbjct: 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 362

Query: 621 GGTSRAQRKA-NALLQLISKSEH 642
             +     KA   L++ ++    
Sbjct: 363 PPSHWPLIKATVGLIRNLALCPA 385

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  162 bits (410), Expect = 1e-42
 Identities = 56/309 (18%), Positives = 100/309 (32%), Gaps = 32/309 (10%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL--PYPDSKIL 421
           + +LV+ L S  + V   A   +  L+  N +N++++   G I  LV+ +        I 
Sbjct: 265 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 324

Query: 422 EHAVTAVLNLSID----ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFS-LSMLD 476
           E A+ A+ +L+      E  +  +     +P ++++L   S      +   L   L++  
Sbjct: 325 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 384

Query: 477 ENKITIGLSDGIPPLVDLLQNGTIRGKKD----------------------AVTALFNLS 514
            N   +     IP LV LL       ++                          AL  L+
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444

Query: 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574
            +  N+        +   + LL      +   A  +L  LA   E    I        L 
Sbjct: 445 RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 504

Query: 575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALL 634
           E +          A AVL  +  +        L     E    L           A+  L
Sbjct: 505 ELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRL---SVELTSSLFRTEPMAWNETADLGL 561

Query: 635 QLISKSEHL 643
            + ++ E L
Sbjct: 562 DIGAQGEPL 570

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 86.5 bits (214), Expect = 8e-18
 Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 2/167 (1%)

Query: 474 MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPL 532
           +++        +  IP L  LL +        A   +  LS  +A++   +    +V  +
Sbjct: 2   LINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAI 61

Query: 533 MNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAV 591
           +  ++   ++         L  L+ H EG   I +   I  LV+ +          A   
Sbjct: 62  VRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITT 121

Query: 592 LLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638
           L  L  +     +A    G  + ++ L      +        LQ+++
Sbjct: 122 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA 168

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  206 bits (526), Expect = 3e-59
 Identities = 62/277 (22%), Positives = 114/277 (41%), Gaps = 7/277 (2%)

Query: 364 IVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           + ++V  + ++  +E  +     +  LS  + E  + I   G IP LV++L  P   +L 
Sbjct: 61  VSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLF 119

Query: 423 HAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKI 480
           +A+T + NL +  E  K  +   G +  ++ +L   + +    +   L  L+  + E+K+
Sbjct: 120 YAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKKD-AVTALFNLSLNQANKARAIDAGIVLPLMNLLEER 539
            I  S G   LV++++  T           L  LS+  +NK   ++AG +  L   L + 
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 239

Query: 540 NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599
           +  +V   L  L  L+       + G    + TLV+ +         CA  +L  L  NN
Sbjct: 240 SQRLVQNCLWTLRNLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

Query: 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636
               +   Q G  E L++       R      A+  L
Sbjct: 298 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  182 bits (463), Expect = 2e-50
 Identities = 49/295 (16%), Positives = 109/295 (36%), Gaps = 13/295 (4%)

Query: 357 TAEQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV 410
              Q +  ++      L + L+     V  +A   +  LSK+      ++     +  +V
Sbjct: 6   INYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 411 QLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAAL 469
           + +    D +        + NLS        I + G IPA++++L S        +   L
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 125

Query: 470 FSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAG 527
            +L +  E  K+ + L+ G+  +V LL    ++        L  L+  NQ +K   + +G
Sbjct: 126 HNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG 185

Query: 528 IVLPLMNLLEERNL-GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKE 586
               L+N++       ++     +L +L+     +  I +   ++ L  ++ + + +  +
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQ 245

Query: 587 CATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641
                L  L    +         G+   L+QL           A  +L  ++ + 
Sbjct: 246 NCLWTLRNLSDAATKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 297

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  165 bits (419), Expect = 2e-44
 Identities = 65/322 (20%), Positives = 124/322 (38%), Gaps = 27/322 (8%)

Query: 345 LPKKDDSETSECTA----------EQKEEIVS------LVEQLSSSKLEVQKEAVRKIRL 388
           +   +D ET+ CTA          E    I        LV+ L S    V   A+  +  
Sbjct: 68  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 127

Query: 389 LSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAI 447
           L       ++ +   G +  +V LL   + K L      +  L+  ++ +K +I   G  
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 187

Query: 448 PAIIEILQSGSTEA-RENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDA 506
            A++ I+++ + E     ++  L  LS+   NK  I  + G+  L   L + + R  ++ 
Sbjct: 188 QALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247

Query: 507 VTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIG 565
           +  L NLS       +    G++  L+ LL   ++ +V  A  IL  L  +  + +  + 
Sbjct: 248 LWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305

Query: 566 QLSFIETLVEYIREGTPKN--KECATAVLLELGANNSSF---ILAALQYGVYEHLIQLTE 620
           Q+  IE LV  +     +    E A   L  L + +        A   +     +++L  
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH 365

Query: 621 GGTSRAQRKA-NALLQLISKSE 641
             +     KA   L++ ++   
Sbjct: 366 PPSHWPLIKATVGLIRNLALCP 387

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  160 bits (407), Expect = 1e-42
 Identities = 70/317 (22%), Positives = 114/317 (35%), Gaps = 40/317 (12%)

Query: 358 AEQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ 411
           +  K  IV       L   L+     + +  +  +R LS +    +  +   G +  LVQ
Sbjct: 217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGME--GLLGTLVQ 273

Query: 412 LLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGST--EARENSAAA 468
           LL   D  ++  A   + NL+  +  NK ++ Q G I A++  +       +  E +  A
Sbjct: 274 LLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICA 333

Query: 469 LFSLS----MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF-NLSLNQANKARA 523
           L  L+      +  +  + L  G+P +V LL   +      A   L  NL+L  AN A  
Sbjct: 334 LRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPL 393

Query: 524 IDAGIVLPLMNLL----------------------EERNLGMVDEALSILLLLATHPEGR 561
            + G +  L+ LL                        R   +V+     L +LA     R
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNR 453

Query: 562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG 621
             I  L+ I   V+ +       +  A  VL EL A +     A    G    L +L   
Sbjct: 454 IVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHS 512

Query: 622 GTSRAQRKANALLQLIS 638
                   A A+L  +S
Sbjct: 513 RNEGVATYAAAVLFRMS 529

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 84.8 bits (210), Expect = 2e-17
 Identities = 28/171 (16%), Positives = 58/171 (33%), Gaps = 2/171 (1%)

Query: 472 LSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KARAIDAGIVL 530
           +++++        +  IP L  LL +        A   +  LS  +A+  A      +V 
Sbjct: 3   VNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 531 PLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589
            ++  ++   ++         L  L+ H EG   I +   I  LV+ +          A 
Sbjct: 63  AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

Query: 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
             L  L  +     +A    G  + ++ L      +        LQ+++  
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  209 bits (533), Expect = 2e-58
 Identities = 63/277 (22%), Positives = 114/277 (41%), Gaps = 7/277 (2%)

Query: 364 IVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           + ++V  + ++  +E  +     +  LS  + E  + I   G IP LV +L  P   +L 
Sbjct: 194 VSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLF 252

Query: 423 HAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKI 480
           HA+T + NL +  E  K  +   G +  ++ +L   + +    +   L  L+  + E+K+
Sbjct: 253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 312

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKK-DAVTALFNLSLNQANKARAIDAGIVLPLMNLLEER 539
            I  S G   LV++++  T           L  LS+  +NK   ++AG +  L   L + 
Sbjct: 313 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP 372

Query: 540 NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599
           +  +V   L  L  L+     +  +  L  + TLV+ +         CA  +L  L  NN
Sbjct: 373 SQRLVQNCLWTLRNLSDAATKQEGMEGL--LGTLVQLLGSDDINVVTCAAGILSNLTCNN 430

Query: 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQL 636
               +   Q G  E L++       R      A+  L
Sbjct: 431 YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  171 bits (435), Expect = 2e-45
 Identities = 49/283 (17%), Positives = 107/283 (37%), Gaps = 7/283 (2%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP-DSKILE 422
           I  L + L+     V  +A   +  LSK+      ++     +  +V+ +    D +   
Sbjct: 152 IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETAR 211

Query: 423 HAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KIT 481
                + NLS        I + G IPA++ +L S       ++   L +L +  E  K+ 
Sbjct: 212 CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMA 271

Query: 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERN 540
           + L+ G+  +V LL    ++        L  L+  NQ +K   + +G    L+N++    
Sbjct: 272 VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT 331

Query: 541 L-GMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599
              ++     +L +L+     +  I +   ++ L  ++ + + +  +     L  L    
Sbjct: 332 YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391

Query: 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSEH 642
           +         G+   L+QL           A  +L  ++ + +
Sbjct: 392 TKQEGME---GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY 431

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  161 bits (409), Expect = 5e-42
 Identities = 51/283 (18%), Positives = 93/283 (32%), Gaps = 29/283 (10%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL--PYPDSKIL 421
           + +LV+ L S  + V   A   +  L+  N +N++++   G I  LV+ +        I 
Sbjct: 401 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460

Query: 422 EHAVTAVLNLSID----ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFS-LSMLD 476
           E A+ A+ +L+      E  +  +     +P ++++L   S      +   L   L++  
Sbjct: 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520

Query: 477 ENKITIGLSDGIPPLVDLLQNGTIRGKKDA----------------------VTALFNLS 514
            N   +     IP LV LL       ++                          AL  L+
Sbjct: 521 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILA 580

Query: 515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV 574
            +  N+        +   + LL      +   A  +L  LA   E    I        L 
Sbjct: 581 RDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLT 640

Query: 575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQ 617
           E +          A AVL  +  +        L   +   L +
Sbjct: 641 ELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  157 bits (397), Expect = 2e-40
 Identities = 63/292 (21%), Positives = 121/292 (41%), Gaps = 5/292 (1%)

Query: 355 ECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLL 413
           E   E  +   +  +    + ++   E  + ++  +               AIP L +LL
Sbjct: 100 ETLDEGMQIPSTQFDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLL 159

Query: 414 PYPDSKILEHAVTAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGS-TEARENSAAALFS 471
              D  ++  A   V  LS  E+++  ++     + AI+  +Q+ +  E    ++  L +
Sbjct: 160 NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHN 219

Query: 472 LSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVL 530
           LS   E  + I  S GIP LV++L +        A+T L NL L+Q     A+  AG + 
Sbjct: 220 LSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQ 279

Query: 531 PLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT 589
            ++ LL + N+  +      L +LA  + E +  I      + LV  +R  T +     T
Sbjct: 280 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT 339

Query: 590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641
           + +L++ +  SS   A ++ G  + L       + R  +     L+ +S + 
Sbjct: 340 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  124 bits (313), Expect = 6e-30
 Identities = 43/218 (19%), Positives = 72/218 (33%), Gaps = 25/218 (11%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKI--- 420
           +  +V+ L         +A   +       P N   + + GAIP LVQLL          
Sbjct: 490 LPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRR 549

Query: 421 -------------------LEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEA 461
                              +E    A+  L+ D  N+ +I     IP  +++L S     
Sbjct: 550 TSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENI 609

Query: 462 RENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA 521
           +  +A  L  L+   E    I       PL +LL +        A   LF +S    +K 
Sbjct: 610 QRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS---EDKP 666

Query: 522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPE 559
           +     + + L + L        +E   + L +    E
Sbjct: 667 QDYKKRLSVELTSSLFRTEPMTWNETGDLGLDIGAQGE 704

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  192 bits (490), Expect = 1e-57
 Identities = 52/197 (26%), Positives = 103/197 (52%), Gaps = 3/197 (1%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH 423
           +  +V+QL+S   +  + A+RK+  ++    E    + D GA+P LVQLL  P+ +IL+ 
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73

Query: 424 AVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKIT 481
           A+ A+ N++       + +   GA+PA++++L S + +  + +  AL +++   +E    
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA 133

Query: 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEERN 540
           +  +  +P LV LL +   +  ++A+ AL N++     + +A+ +AG +  L  L    N
Sbjct: 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193

Query: 541 LGMVDEALSILLLLATH 557
             +  EA   L  L +H
Sbjct: 194 EKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  123 bits (312), Expect = 1e-32
 Identities = 46/208 (22%), Positives = 96/208 (46%), Gaps = 4/208 (1%)

Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEI 453
            +         +P +VQ L  PD + L+ A+  +  ++       + +   GA+PA++++
Sbjct: 3   GSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQL 62

Query: 454 LQSGSTEARENSAAALFSLSMLDENKI-TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN 512
           L S + +  + +  AL +++     +I  +  +  +P LV LL +   +  ++A+ AL N
Sbjct: 63  LSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 122

Query: 513 LSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFI 570
           ++          IDAG +  L+ LL   N  ++ EAL  L  +A+   E +  + +   +
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 182

Query: 571 ETLVEYIREGTPKNKECATAVLLELGAN 598
           E L +       K ++ A   L +L ++
Sbjct: 183 EKLEQLQSHENEKIQKEAQEALEKLQSH 210

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  114 bits (287), Expect = 4e-29
 Identities = 41/208 (19%), Positives = 87/208 (41%), Gaps = 3/208 (1%)

Query: 435 ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVD 493
             +         +P +++ L S   +  +++   L  ++   +E    +  +  +P LV 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 494 LLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMNLLEERNLGMVDEALSILL 552
           LL +   +  ++A+ AL N++     + +A+ DAG +  L+ LL   N  ++ EAL  L 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 553 LLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV 611
            +A+   E    +     +  LV+ +     +  + A   L  + +  +    A  + G 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181

Query: 612 YEHLIQLTEGGTSRAQRKANALLQLISK 639
            E L QL      + Q++A   L+ +  
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 80.4 bits (199), Expect = 2e-17
 Identities = 33/172 (19%), Positives = 67/172 (38%), Gaps = 3/172 (1%)

Query: 475 LDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLM 533
           +  +         +P +V  L +   +  + A+  L  ++     + +A+ DAG +  L+
Sbjct: 1   MRGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALV 60

Query: 534 NLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL 592
            LL   N  ++ EAL  L  +A+   E    +     +  LV+ +     +  + A   L
Sbjct: 61  QLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120

Query: 593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKA-NALLQLISKSEHL 643
             + +  +  I A +  G    L+QL      +  ++A  AL  + S     
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 172

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  181 bits (461), Expect = 9e-52
 Identities = 57/304 (18%), Positives = 116/304 (38%), Gaps = 27/304 (8%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL---------- 413
           +      + +        AV  +  LS  + E+R  + + G +  + +LL          
Sbjct: 34  MDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLT 92

Query: 414 -PYPDSKILEHAVTAVLNLSIDESNKR--LIAQQGAIPAIIEILQSGSTEARENSAAALF 470
             +    +  +A  A+ NL+  +   +  L + +G + A++  L+S S + ++  A+ L 
Sbjct: 93  NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 152

Query: 471 SLSML--DENKITIGLSDGIPPLVDLLQNGTIRG-KKDAVTALFNLS-LNQANKARAIDA 526
           +LS      +K T+     +  L++           K  ++AL+NLS     NKA     
Sbjct: 153 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAV 212

Query: 527 GIVLP-----LMNLLEERNLGMVDEALSIL----LLLATHPEGRHKIGQLSFIETLVEYI 577
              L      L    +   L +++    IL     L+AT+ + R  + + + ++TL++++
Sbjct: 213 DGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 272

Query: 578 REGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI 637
           +  +      A   L  L A N     A    G    L  L           + A L+ +
Sbjct: 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL 332

Query: 638 SKSE 641
             + 
Sbjct: 333 MANR 336

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  153 bits (389), Expect = 1e-41
 Identities = 46/229 (20%), Positives = 99/229 (43%), Gaps = 20/229 (8%)

Query: 358 AEQKEEIVS-------LVEQLSSSKLEVQKEAVRKIRLLS-KENPENRILIADCGAIPPL 409
              K  + S       LV QL S   ++Q+     +R LS + +  ++  + + G++  L
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175

Query: 410 VQLL-PYPDSKILEHAVTAVLNLSID-ESNKRLIAQ-QGAIPAIIEIL----QSGSTEAR 462
           ++          L+  ++A+ NLS     NK  I    GA+  ++  L    Q+ +    
Sbjct: 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAII 235

Query: 463 ENSAAALFSLSML----DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQ 517
           E+    L ++S L    ++++  +  ++ +  L+  L++ ++    +A   L+NLS  N 
Sbjct: 236 ESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 295

Query: 518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ 566
            ++    D G V  L NL+  ++  +   + + L  L  +   ++K   
Sbjct: 296 KDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDAN 344

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  124 bits (313), Expect = 2e-31
 Identities = 59/294 (20%), Positives = 103/294 (35%), Gaps = 30/294 (10%)

Query: 379 QKEAVRKIRLLSK----ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID 434
                  + LL +             A    +      +P P    +  AV  ++ LS D
Sbjct: 3   HHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD 62

Query: 435 ESNKRLIAQQGAIPAIIEILQSG-----------STEARENSAAALFSLSMLD-ENKITI 482
           E ++  + + G + AI E+LQ             S   R  +  AL +L+  D  NK T+
Sbjct: 63  EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATL 122

Query: 483 GLSDG-IPPLVDLLQNGTIRGKKDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEE- 538
               G +  LV  L++ +   ++   + L NLS   +  +K    + G V  LM    E 
Sbjct: 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEV 182

Query: 539 RNLGMVDEALSILLLLATH-PEGRHKIGQLS-----FIETLVEYIREGTPKNKECATAVL 592
           +    +   LS L  L+ H  E +  I  +       + TL    +  T    E    +L
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGIL 242

Query: 593 LELG---ANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKA-NALLQLISKSEH 642
             +    A N        +    + L+Q  +  +      A   L  L +++  
Sbjct: 243 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK 296

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  119 bits (299), Expect = 1e-29
 Identities = 35/174 (20%), Positives = 73/174 (41%), Gaps = 11/174 (6%)

Query: 364 IVSLVEQL-SSSKLEVQKEAVRKIRLLSKENPENRILIA-DCGAIPPLVQLLPYPDS--- 418
           + +L+E      K    K  +  +  LS    EN+  I    GA+  LV  L Y      
Sbjct: 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNT 231

Query: 419 -KILEHAVTAVLNLS----IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
             I+E     + N+S     +E +++++ +   +  +++ L+S S     N+   L++LS
Sbjct: 232 LAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLS 291

Query: 474 MLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
             + +++  +     +  L +L+ +        +  AL NL  N+  K +  + 
Sbjct: 292 ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 73.7 bits (181), Expect = 3e-14
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 4/90 (4%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH 423
           + +L++ L S  L +   A   +  LS  NP+++  + D GA+  L  L+      I   
Sbjct: 265 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMG 324

Query: 424 AVTAVLNLSIDESNKRLIAQQ----GAIPA 449
           +  A+ NL  +   K   A       ++P+
Sbjct: 325 SAAALRNLMANRPAKYKDANIMSPGSSLPS 354

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  174 bits (443), Expect = 3e-48
 Identities = 60/297 (20%), Positives = 119/297 (40%), Gaps = 27/297 (9%)

Query: 368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-----------PYP 416
              + +        AV  +  LS  + E+R  + + G +  + +LL            + 
Sbjct: 154 KNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHY 212

Query: 417 DSKILEHAVTAVLNLSI-DESNKRLI-AQQGAIPAIIEILQSGSTEARENSAAALFSLSM 474
              +  +A  A+ NL+  D +NK  + + +G + A++  L+S S + ++  A+ L +LS 
Sbjct: 213 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSW 272

Query: 475 L--DENKITIGLSDGIPPLVDLLQNGTIRG-KKDAVTALFNLS-LNQANKARAIDA-GIV 529
                +K T+     +  L++           K  ++AL+NLS     NKA      G +
Sbjct: 273 RADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332

Query: 530 LPLMNLL----EERNLGMVDEALSIL----LLLATHPEGRHKIGQLSFIETLVEYIREGT 581
             L+  L    +   L +++    IL     L+AT+ + R  + + + ++TL+++++  +
Sbjct: 333 AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHS 392

Query: 582 PKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638
                 A   L  L A N     A    G    L  L           + A L+ + 
Sbjct: 393 LTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLM 449

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  142 bits (359), Expect = 9e-37
 Identities = 44/213 (20%), Positives = 98/213 (46%), Gaps = 13/213 (6%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLS-KENPENRILIADCGAIPPLVQLL-PYPDSKIL 421
           + +LV QL S   ++Q+     +R LS + +  ++  + + G++  L++          L
Sbjct: 245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 422 EHAVTAVLNLSID-ESNKRLIAQ-QGAIPAIIEIL----QSGSTEARENSAAALFSLSML 475
           +  ++A+ NLS     NK  I    GA+  ++  L    Q+ +    E+    L ++S L
Sbjct: 305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSL 364

Query: 476 ----DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVL 530
               ++++  +  ++ +  L+  L++ ++    +A   L+NLS  N  ++    D G V 
Sbjct: 365 IATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVS 424

Query: 531 PLMNLLEERNLGMVDEALSILLLLATHPEGRHK 563
            L NL+  ++  +   + + L  L  +   ++K
Sbjct: 425 MLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  141 bits (356), Expect = 2e-36
 Identities = 52/256 (20%), Positives = 104/256 (40%), Gaps = 15/256 (5%)

Query: 361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENR-ILIADCGAIPPLVQLLPYPDSK 419
           + +            + +++ A   +  L+  +  N+  L +  G +  LV  L      
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 420 ILEHAVTAVLNLSI--DESNKRLIAQQGAIPAIIEILQSGSTEA-RENSAAALFSLSML- 475
           + +   + + NLS   D ++K+ + + G++ A++E       E+  ++  +AL++LS   
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 476 DENKITIGLSDG-IPPLVDLL----QNGTIRGKKDAVTALFNLS----LNQANKARAIDA 526
            ENK  I   DG +  LV  L    Q  T+   +     L N+S     N+ ++    + 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 527 GIVLPLMNLLEERNLGMVDEALSILL-LLATHPEGRHKIGQLSFIETLVEYIREGTPKNK 585
             +  L+  L+  +L +V  A   L  L A +P+ +  +  +  +  L   I        
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438

Query: 586 ECATAVLLELGANNSS 601
             + A L  L AN  +
Sbjct: 439 MGSAAALRNLMANRPA 454

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  121 bits (304), Expect = 2e-29
 Identities = 63/323 (19%), Positives = 117/323 (36%), Gaps = 32/323 (9%)

Query: 352 ETSECTAEQKEEIVSLVEQLSSSKLE--VQKEAVRKIRLLSKE----NPENRILIADCGA 405
             S  + E +    + +  +  S+ +    +  +R + LL +             A    
Sbjct: 90  GNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149

Query: 406 IPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG-------- 457
           +      +P P    +  AV  ++ LS DE ++  + + G + AI E+LQ          
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTN 209

Query: 458 ---STEARENSAAALFSLSMLD-ENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFN 512
              S   R  +  AL +L+  D  NK T+    G +  LV  L++ +   ++   + L N
Sbjct: 210 DHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN 269

Query: 513 LSL--NQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATH-PEGRHKIGQLS 568
           LS   +  +K    + G V  LM    E +    +   LS L  L+ H  E +  I  + 
Sbjct: 270 LSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVD 329

Query: 569 -FIETLVEYIREGTPKN----KECATAVLLELG---ANNSSFILAALQYGVYEHLIQLTE 620
             +  LV  +   +  N     E    +L  +    A N        +    + L+Q  +
Sbjct: 330 GALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 389

Query: 621 GGTSRAQRKA-NALLQLISKSEH 642
             +      A   L  L +++  
Sbjct: 390 SHSLTIVSNACGTLWNLSARNPK 412

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  109 bits (273), Expect = 1e-25
 Identities = 48/335 (14%), Positives = 107/335 (31%), Gaps = 62/335 (18%)

Query: 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-------- 413
           E + SL+  L +     + +  R +  +S  + ++ I +   G +P L+QLL        
Sbjct: 32  EMVYSLLSMLGT---HDKDDMSRTLLAMSS-SQDSCISMRQSGCLPLLIQLLHGNDKDSV 87

Query: 414 ----PYPDSKILEHAVTAVLNLSIDESNKR-------------------------LIAQQ 444
                    +    A  A+ N+   + + +                           A +
Sbjct: 88  LLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147

Query: 445 GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGT----- 499
             +      + +        +   L  LS  +E++  +    G+  + +LLQ        
Sbjct: 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGL 207

Query: 500 ------IRGKKDAVTALFNLSLNQANKARAI--DAGIVLPLMNLLEERNLGMVDEALSIL 551
                 I  ++ A  AL NL+         +    G +  L+  L+  +  +     S+L
Sbjct: 208 TNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 267

Query: 552 LLLATH--PEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVLLELGANNSSFILAALQ 608
             L+       +  + ++  ++ L+E   E       +   + L  L A+ +        
Sbjct: 268 RNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA 327

Query: 609 Y-GVYEHLIQL----TEGGTSRAQRKANALLQLIS 638
             G    L+      ++  T         +L+ +S
Sbjct: 328 VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 362

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  169 bits (429), Expect = 2e-46
 Identities = 62/306 (20%), Positives = 120/306 (39%), Gaps = 7/306 (2%)

Query: 344 KLPKKDDSETSECTAEQKEEIVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIAD 402
           KL  K+ +   +        +   VE L   +   +Q E+   +  ++  N     ++  
Sbjct: 46  KLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQ 105

Query: 403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR-LIAQQGAIPAIIEILQSGST-E 460
            GA+P  ++LL      + E AV A+ N++ D +  R  +     +P ++++    +   
Sbjct: 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT 165

Query: 461 ARENSAAALFSLSMLDENKITIG-LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN 519
              N+  AL +L            +S  +  L  LL         DA  AL  LS    +
Sbjct: 166 MTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPND 225

Query: 520 KARAI-DAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYI 577
           K +A+ DAG+   L+ LL   +  +V  AL  +  + T        I   S +++L+  +
Sbjct: 226 KIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLL 285

Query: 578 REGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN-ALLQL 636
                  K+ A   +  + A N + I   +   ++  LI + +    R +++A  A+   
Sbjct: 286 SSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNA 345

Query: 637 ISKSEH 642
            S    
Sbjct: 346 TSGGSA 351

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  130 bits (327), Expect = 2e-32
 Identities = 63/305 (20%), Positives = 118/305 (38%), Gaps = 10/305 (3%)

Query: 349 DDSETSECTAEQKEEIVS-LVEQLSSSKLEVQKEAVRKIR-LLSKE-NPENRILIADCGA 405
            +++ +         I S ++E + S   E Q  A +K R LLSKE NP    +I+  G 
Sbjct: 6   HEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGV 65

Query: 406 IPPLVQLLPYPDSKILEHAVTAVLNL--SIDESNKRLIAQQGAIPAIIEILQSGSTEARE 463
           +   V+ L   ++  L+     VL    S +    R++ Q GA+P  IE+L S   + +E
Sbjct: 66  VARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQE 125

Query: 464 NSAAALFSLSMLDENKITIGLSDG-IPPLVDLLQNGT-IRGKKDAVTALFNLSLNQANKA 521
            +  AL +++          L    +PPL+ L      +   ++AV AL NL   ++   
Sbjct: 126 QAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP 185

Query: 522 RAI-DAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIRE 579
                +  +  L  LL   +  ++ +A   L  L+  P +    +        LVE +  
Sbjct: 186 EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMH 245

Query: 580 GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKA-NALLQLIS 638
              K    A   +  +   +       L     + L+ L        +++A   +  + +
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305

Query: 639 KSEHL 643
            +   
Sbjct: 306 GNRAQ 310

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  118 bits (298), Expect = 1e-28
 Identities = 45/238 (18%), Positives = 89/238 (37%), Gaps = 6/238 (2%)

Query: 364 IVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           +  L++  S  ++L + + AV  +  L +              +  L  LL   D+ +L 
Sbjct: 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLA 210

Query: 423 HAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKI 480
            A  A+  LS       + +   G    ++E+L     +    +  A+ ++    D    
Sbjct: 211 DACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEER 539
            I     +  L+ LL +     KK+A   + N++  N+A     IDA I   L+++L+  
Sbjct: 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA 330

Query: 540 NLGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595
                 EA   +    +    E    + +L  I+ L + +     K  + A   L  +
Sbjct: 331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI 388

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  107 bits (269), Expect = 4e-25
 Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 10/194 (5%)

Query: 354 SECTAEQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
           S+   ++ + ++       LVE L  +  +V   A+R +  +   +     +I +C A+ 
Sbjct: 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQ 279

Query: 408 PLVQLLPYPDSKILEHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
            L+ LL  P   I + A   + N+ + + +  + +      PA+I ILQ+     R+ +A
Sbjct: 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA 339

Query: 467 AALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI 524
            A+ + +     E    +     I PL DLL     +  + A+  L N+ L    +    
Sbjct: 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI-LRLGEQEAKR 398

Query: 525 DAGIVLPLMNLLEE 538
           +   + P   L+EE
Sbjct: 399 NGTGINPYCALIEE 412

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  143 bits (363), Expect = 3e-41
 Identities = 41/74 (55%), Positives = 57/74 (77%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
            P  F CPI+LE+M+DPVI+++GQT+ER S+QKW D+ H+TCPK+++TL H  + PNY L
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 331 KNLILQWCEKNNFK 344
           K+LI  WCE N  +
Sbjct: 65  KSLIALWCESNGIE 78

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  143 bits (363), Expect = 4e-40
 Identities = 33/174 (18%), Positives = 67/174 (38%), Gaps = 7/174 (4%)

Query: 169 TQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQS 228
           TQ +    D+       + +  +    +R++++       +L      +    KER    
Sbjct: 6   TQRLNFGDDIPSALRIAKKKRWNSIEEKRISQEN------ELHAYLSKLILAEKERELDD 59

Query: 229 SESIQQMIDLLNKFKQVAGMEITNVLD-DPIVPKMLGKSLSLVIPHEFLCPITLEIMRDP 287
                          ++       ++D D +  ++  K     IP      I+ E+MR+P
Sbjct: 60  RVKQSDDSQNGGDISKMKSKHDKYLMDMDELFSQVDEKRKKREIPDYLCGKISFELMREP 119

Query: 288 VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKN 341
            I  SG T++R+ +++         P TR  L    + PN A+K +I  + ++N
Sbjct: 120 CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQEN 173

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  150 bits (379), Expect = 4e-39
 Identities = 61/290 (21%), Positives = 111/290 (38%), Gaps = 11/290 (3%)

Query: 364 IVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           I   V  L  +    +Q E+   +  ++    E    + D GAIP  + LL  P + I E
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161

Query: 423 HAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGSTEARENSAA--ALFSLSMLDENK 479
            AV A+ N++ D  + + L+ + GAI  ++ +L                 ++LS L  NK
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221

Query: 480 I----TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI-DAGIVLPLMN 534
                   +   +P LV LL +       D+  A+  L+     +   +   G+V  L+ 
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 281

Query: 535 LLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593
           LL    L +V  AL  +  + T   E   K+     +      +       ++ AT  + 
Sbjct: 282 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 341

Query: 594 ELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN-ALLQLISKSEH 642
            + A     I   + +G+   L+ +      + Q++A  A+    S    
Sbjct: 342 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTV 391

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  118 bits (296), Expect = 2e-28
 Identities = 54/308 (17%), Positives = 103/308 (33%), Gaps = 12/308 (3%)

Query: 348 KDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAI 406
           K  ++           +  +V+ ++S+ LE Q +A +  R LLS+E       I   G I
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102

Query: 407 PPLVQLLPYPDS-KILEHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEAREN 464
           P  V  L   D   I   +  A+ N+ S      + +   GAIPA I +L S      E 
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 162

Query: 465 SAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL------NQ 517
           +  AL +++      +  +     I PL+ LL    +             +L        
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222

Query: 518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR-HKIGQLSFIETLVEY 576
                     I+  L+ LL   +  ++ ++   +  L   P  R   + +   +  LV+ 
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 282

Query: 577 IREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN-ALLQ 635
           +          A   +  +           +  G       L     +  Q++A   +  
Sbjct: 283 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 342

Query: 636 LISKSEHL 643
           + +  +  
Sbjct: 343 ITAGRQDQ 350

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  107 bits (269), Expect = 6e-25
 Identities = 45/213 (21%), Positives = 97/213 (45%), Gaps = 7/213 (3%)

Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
           LV  L  +  EV  ++   I  L+    E   ++   G +P LV+LL   +  I+  A+ 
Sbjct: 237 LVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR 296

Query: 427 AVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLS 485
           A+ N+ +  +   + +   GA+     +L +  T  ++ +   + +++   +++I   ++
Sbjct: 297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVN 356

Query: 486 DG-IPPLVDLLQNGTIRGKKDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEERNLG 542
            G +P LV +L     + +K+A  A+ N +           +  GI+ PLMNLL  ++  
Sbjct: 357 HGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTK 416

Query: 543 MVDEALSILLLLATHPEGRHKIGQLSFIETLVE 575
           ++   L  +  +    E   K+G+   +  ++E
Sbjct: 417 IIQVILDAISNIFQAAE---KLGETEKLSIMIE 446

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  100 bits (251), Expect = 1e-22
 Identities = 39/214 (18%), Positives = 89/214 (41%), Gaps = 16/214 (7%)

Query: 354 SECTAEQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
           ++   E+ E +V       LV+ L +++L +   A+R I  +     E    + D GA+ 
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALA 319

Query: 408 PLVQLLPYPDSKILEHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
               LL  P + I + A   + N+ +  +   + +   G +P ++ +L     + ++ +A
Sbjct: 320 VFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAA 379

Query: 467 AALFSLSML--DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL-----SLNQAN 519
            A+ + +     E  + +     I PL++LL     +  +  + A+ N+      L +  
Sbjct: 380 WAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETE 439

Query: 520 KARA--IDAGIVLPLMNLLEERNLGMVDEALSIL 551
           K      + G +  +  L    N  +   +L+++
Sbjct: 440 KLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 99.7 bits (248), Expect = 3e-22
 Identities = 51/285 (17%), Positives = 94/285 (32%), Gaps = 14/285 (4%)

Query: 370 QLSSSKLEVQKEAVRKIRLLSKENP---ENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
           + +++K E Q      +     +               ++  +V+ +   + +    A  
Sbjct: 20  ETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQ 79

Query: 427 AVLNLSIDESNK--RLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSL-SMLDENKITI 482
           A   L   E       I + G IP  +  L  +  +  +  SA AL ++ S   E    +
Sbjct: 80  AARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAV 139

Query: 483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNL 541
                IP  + LL +      + AV AL N++    A +   I  G + PL+ LL   +L
Sbjct: 140 VDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDL 199

Query: 542 GMVDEALSILLLLATHPEGRHKIGQLSF------IETLVEYIREGTPKNKECATAVLLEL 595
             +       L        R+K            + TLV  +    P+    +   +  L
Sbjct: 200 STLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYL 259

Query: 596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
               +  I   ++ GV   L++L           A   +  I   
Sbjct: 260 TDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG 304

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 70.0 bits (171), Expect = 7e-13
 Identities = 32/223 (14%), Positives = 73/223 (32%), Gaps = 11/223 (4%)

Query: 430 NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK--ITIGLSDG 487
           + ++ +          ++  I++ + S + E++  +  A   L   ++      I  +  
Sbjct: 42  DKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 101

Query: 488 IPPLVDLLQNG-TIRGKKDAVTALFNL-SLNQANKARAIDAGIVLPLMNLLEERNLGMVD 545
           IP  V  L        + ++  AL N+ S         +D G +   ++LL   +  + +
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 161

Query: 546 EALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKN-----KECATAVLLELGANN 599
           +A+  L  +A      R  + +   I+ L+  +                T  L  L  N 
Sbjct: 162 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 221

Query: 600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKA-NALLQLISKSE 641
           +          +   L++L           +  A+  L     
Sbjct: 222 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 264

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  147 bits (372), Expect = 4e-38
 Identities = 58/300 (19%), Positives = 119/300 (39%), Gaps = 13/300 (4%)

Query: 354 SECTAEQKEEIV------SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
           +  T+ Q + +V        ++ L +  +EV+++A+  +  ++ ++ + R  +  C A+ 
Sbjct: 159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAME 218

Query: 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESN-KRLIAQQGAIPAIIEILQSGSTEARENSA 466
           P++ L       ++  A   + NL   +           A+P + +++ S  TE   ++ 
Sbjct: 219 PILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDAC 278

Query: 467 AALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNL-SLNQANKARAI 524
            A+  LS   +  I   +       LV+LL + +   +  A+ A+ N+ + N       I
Sbjct: 279 WAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVI 338

Query: 525 DAGIVLPLMNLLEERNLGMVDEALSILL-LLATHPEGRHKIGQLSFIETLVEYIREGTPK 583
           +AG++  L  LL      +  EA   +  + A + E    +   + I  LV+ +     K
Sbjct: 339 NAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYK 398

Query: 584 NKECATAVLLEL---GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
            K+ A   +      G      I   +  G  + L  L E   +R        L+ I K 
Sbjct: 399 TKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM 458

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  139 bits (352), Expect = 2e-35
 Identities = 55/317 (17%), Positives = 131/317 (41%), Gaps = 6/317 (1%)

Query: 332 NLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR-LLS 390
           N I      ++ +  +   S   +  ++ ++E+  + +QL+S  ++ Q  A  K R +LS
Sbjct: 57  NFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS 116

Query: 391 KENPENRILIADCGAIPPLVQLLPYPDSKIL-EHAVTAVLNL-SIDESNKRLIAQQGAIP 448
           +E+     ++   G +P LV+ +     ++L   A  A+ N+ S   +  +++    A+P
Sbjct: 117 REHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 176

Query: 449 AIIEILQSGSTEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507
             I++L +GS E +E +  AL +++    + +  +   + + P++ L  +      + A 
Sbjct: 177 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 236

Query: 508 TALFNLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIG- 565
             L NL   +  +   ++ +  +  L  L+   +   + +A   +  L+  P+   +   
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296

Query: 566 QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSR 625
            +   + LVE +   +   +  A   +  +   N       +  GV   L  L       
Sbjct: 297 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 356

Query: 626 AQRKANALLQLISKSEH 642
            +++A   +  I+    
Sbjct: 357 IKKEACWTISNITAGNT 373

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  137 bits (347), Expect = 8e-35
 Identities = 55/285 (19%), Positives = 109/285 (38%), Gaps = 6/285 (2%)

Query: 364 IVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           +  LVE +  ++   +Q EA   +  ++        ++ D  A+P  +QLL     ++ E
Sbjct: 132 VPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191

Query: 423 HAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT 481
            A+ A+ N++ D    +  + Q  A+  I+ +  S        +   L +L    + +  
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPD 251

Query: 482 IGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA-IDAGIVLPLMNLLEER 539
             + S  +P L  L+ +       DA  A+  LS       +A ID  I   L+ LL   
Sbjct: 252 WSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE 311

Query: 540 NLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN 598
           +  +   AL  +  + T        +     +  L   +       K+ A   +  + A 
Sbjct: 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371

Query: 599 NSSFILAALQYGVYEHLIQLTEGGTSRAQRKAN-ALLQLISKSEH 642
           N+  I A +   +   L++L E    + +++A  A+    S    
Sbjct: 372 NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQ 416

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 41/202 (20%), Positives = 79/202 (39%), Gaps = 17/202 (8%)

Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT 426
           LVE LS     VQ  A+R +  +   N     ++ + G +P L  LL  P   I + A  
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW 363

Query: 427 AVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI----T 481
            + N++  +    + +     IP ++++L+    + ++ +  A+ + S     +      
Sbjct: 364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRY 423

Query: 482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARA------------IDAGIV 529
           +     I PL DLL+    R  +  + AL N+         A              AG +
Sbjct: 424 LVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGM 483

Query: 530 LPLMNLLEERNLGMVDEALSIL 551
             + N  +  N  + ++A  I+
Sbjct: 484 EKIFNCQQNENDKIYEKAYKII 505

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 29/140 (20%), Positives = 54/140 (38%), Gaps = 21/140 (15%)

Query: 351 SETSECTAEQKEEIVS------LVEQLSSSKLEVQKEAVRKIRLLSK---ENPENRILIA 401
           S  +    EQ + ++       LV+ L  ++ + +KEA   I   S    + P+    + 
Sbjct: 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLV 425

Query: 402 DCGAIPPLVQLLPYPDSKILEHAVTAVLNL------------SIDESNKRLIAQQGAIPA 449
             G I PL  LL   D++I+E  + A+ N+                 N   I + G +  
Sbjct: 426 SQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEK 485

Query: 450 IIEILQSGSTEARENSAAAL 469
           I    Q+ + +  E +   +
Sbjct: 486 IFNCQQNENDKIYEKAYKII 505

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  135 bits (341), Expect = 2e-34
 Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 21/247 (8%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH 423
           I   V+ LSS   + Q      I+    ++   +  +   G I  LV LL  P+  + + 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 424 AVTAVLNLSI-DESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKIT 481
           A  A+ NL     +NK    +Q  I   + +L ++G+ E ++     L++LS  DE K  
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 482 IGLSDGIPPLVDLLQNGTIRG----------------KKDAVTALFNLSLNQANKARAID 525
           +  +D +P L D +                         +A   L NLS   A +    +
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 526 -AGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPK 583
            +G++  LM  ++        +  S+   +   H        ++      +EY       
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 584 NKECATA 590
            K     
Sbjct: 243 EKSSTGC 249

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 91.0 bits (225), Expect = 2e-19
 Identities = 24/194 (12%), Positives = 70/194 (36%), Gaps = 15/194 (7%)

Query: 338 CEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRL------LSK 391
               +  LP+++ +          + I + +  +  SK +   EA               
Sbjct: 259 NNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 392 ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII 451
            +  ++++      +P + +LL   +S ++    + + N+S      R++  Q   P + 
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVT 377

Query: 452 EILQSG------STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTI-RGK 503
            +L S       S +   ++   + +L     +       S  +  +++L ++    +  
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 504 KDAVTALFNLSLNQ 517
           + A   L ++  ++
Sbjct: 438 EAARLLLSDMWSSK 451

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 78.3 bits (192), Expect = 2e-15
 Identities = 51/306 (16%), Positives = 93/306 (30%), Gaps = 33/306 (10%)

Query: 369 EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC-GAIPPLVQLL------PYPDSKIL 421
                   EV   A   +R LS      R  + +  G I  L+  +         D K +
Sbjct: 150 MSREVVDPEVFFNATGCLRNLS-SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSV 208

Query: 422 EHAVTAVLNLS--IDESNKRLIAQQGAIPAIIEILQSGST--------EARENSAAALFS 471
           E+ +  + NLS  +D        Q           +S +             N    L  
Sbjct: 209 ENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE 268

Query: 472 LSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT-ALFNLSLNQANKARAI------ 524
                +    +  SD I   ++L+         +A   AL NL+ ++   +  +      
Sbjct: 269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGL 328

Query: 525 DAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKN 584
               +  +  LL+  N  +V    S+L  ++ HP     +G       +   +   T   
Sbjct: 329 KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNT 387

Query: 585 K------ECATAVLLELGANNSSFILAALQYGVYEHLIQLTE-GGTSRAQRKANALLQLI 637
                    A   +  L A+            +  ++I L     + +A   A  LL  +
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447

Query: 638 SKSEHL 643
             S+ L
Sbjct: 448 WSSKEL 453

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 74.1 bits (181), Expect = 4e-14
 Identities = 32/243 (13%), Positives = 72/243 (29%), Gaps = 19/243 (7%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH 423
           + + +  L +    +  E   + R L           +  G        +         +
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN------NN 261

Query: 424 AVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEA-RENSAAALFSLSMLDENK--- 479
               +     +      +    AI   + ++     +A  E  A AL +L+         
Sbjct: 262 YDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG 321

Query: 480 ---ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGI-----VLP 531
              +      G+P +  LLQ+G     +   + L N+S +        +        +L 
Sbjct: 322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLT 381

Query: 532 LMNLLEERNLGMVDEALSILL-LLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATA 590
                   +  ++  A   +  L+A+ P+   +    S +  ++   R         A  
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 591 VLL 593
           +LL
Sbjct: 442 LLL 444

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  131 bits (330), Expect = 2e-32
 Identities = 56/365 (15%), Positives = 119/365 (32%), Gaps = 61/365 (16%)

Query: 339 EKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRI 398
           E+ +                 ++ E+  ++  L      V+  A   ++ L   N + + 
Sbjct: 25  ERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKT 84

Query: 399 LIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DESNKRLIAQQGAIPAIIEILQS 456
            +     IP LV LL +P  ++   A  A+ N+S   D+ NK  I     +PA++ +L+ 
Sbjct: 85  DVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK 144

Query: 457 G-STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL------------------QN 497
               +  E     L++LS  D  K+ I +   +  L D +                    
Sbjct: 145 ARDMDLTEVITGTLWNLSSHDSIKMEI-VDHALHALTDEVIIPHSGWEREPNEDCKPRHI 203

Query: 498 GTIRGKKDAVTALFNLSLNQANKARAIDA--GIVLPLMNLL------EERNLGMVDEALS 549
                  +    L N+S  ++   R +    G+V  L+ ++      ++ +  +V+  + 
Sbjct: 204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVC 263

Query: 550 ILLLL--------------------------ATHPEGRHKIGQLSFIETLVEYIREGT-P 582
           +L  L                           +   G   + Q   +   +  ++E   P
Sbjct: 264 LLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP 323

Query: 583 KNKECATAVLLELGANNSSFILAA----LQYGVYEHLIQLTEGGTSRAQRKANALLQLIS 638
              E +   +  L A   ++         Q      +  L      R  + A+  L+ ++
Sbjct: 324 AILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLA 383

Query: 639 KSEHL 643
                
Sbjct: 384 VDARN 388

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  103 bits (258), Expect = 2e-23
 Identities = 37/192 (19%), Positives = 77/192 (40%), Gaps = 7/192 (3%)

Query: 362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKIL 421
            E V   +   +   + ++ ++  +  L K  P           +P ++ +L +    + 
Sbjct: 8   GEEVPSDQYYWAPLAQHERGSLASLDSLRKGGP--PPPNWRQPELPEVIAMLGFRLDAVK 65

Query: 422 EHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML--DEN 478
            +A   + +L   ++  K  + +   IP ++ +L     E    +  AL ++S     +N
Sbjct: 66  SNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125

Query: 479 KITIGLSDGIPPLVDLLQNGT-IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLE 537
           KI I   DG+P LV LL+    +   +     L+NLS + + K   +D  +   L + + 
Sbjct: 126 KIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALH-ALTDEVI 184

Query: 538 ERNLGMVDEALS 549
             + G   E   
Sbjct: 185 IPHSGWEREPNE 196

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 95.4 bits (236), Expect = 9e-21
 Identities = 39/228 (17%), Positives = 78/228 (34%), Gaps = 17/228 (7%)

Query: 306 DSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIV 365
           DS+ +        L +LS   +  +           N                 Q E + 
Sbjct: 252 DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVR 311

Query: 366 SLVEQLS-SSKLEVQKEAVRKIRLLSKEN----PENRILIADCGAIPPLVQLLPYPDSKI 420
             +  L  S    + + +   I+ L           R  +    A+  +  LL     ++
Sbjct: 312 IYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERV 371

Query: 421 LEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSG--------STEARENSAAALFSL 472
           ++ A  A+ NL++D  NK LI  + AIP +++ L  G        S +   +    +  +
Sbjct: 372 VKAASGALRNLAVDARNKELIG-KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430

Query: 473 SMLD-ENKITIGLSDGIPPLVDLLQNGTI--RGKKDAVTALFNLSLNQ 517
              + E    +  + GI  LV + ++G    +  + A   L  +   +
Sbjct: 431 IAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 91.6 bits (226), Expect = 2e-19
 Identities = 58/265 (21%), Positives = 94/265 (35%), Gaps = 49/265 (18%)

Query: 377 EVQKEAVRKIRLLSKENPENRILIADC-GAIPPLVQLL------PYPDSKILEHAVTAVL 429
            V       +R +S E  E R  + +C G +  L+ ++         DSK++E+ V  + 
Sbjct: 207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLR 266

Query: 430 NLS--------------------------IDESNKRLIAQQGAIPAIIEILQSGSTEA-R 462
           NLS                                 L+ Q   +   I +L+   T A  
Sbjct: 267 NLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL 326

Query: 463 ENSAAALFSLS-----MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ 517
           E SA A+ +L           +  +     +  + DLL N   R  K A  AL NL+++ 
Sbjct: 327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDA 386

Query: 518 ANKARAIDAGIVLPLMNLLEERNLGM--------VDEALSILL-LLATHPEGRHKIGQLS 568
            NK   I    +  L+  L               V   L+ +  ++A + E   K+ +  
Sbjct: 387 RNKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQ 445

Query: 569 FIETLVEYIREGTPKNKECATAVLL 593
            IE LV   + G    KE   A L+
Sbjct: 446 GIEKLVLINKSGNRSEKEVRAAALV 470

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 45.3 bits (106), Expect = 5e-05
 Identities = 17/125 (13%), Positives = 48/125 (38%), Gaps = 10/125 (8%)

Query: 364 IVSLVEQLSSSKL--------EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-- 413
           I +LV+ L   +         +     +  I  +  EN E    + +   I  LV +   
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 414 PYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLS 473
                K +  A   +  +   +  ++ + ++G   +  ++  + ++ ++ + +    +L 
Sbjct: 457 GNRSEKEVRAAALVLQTIWGYKELRKPLEKEGWKKSDFQVNLNNASRSQSSHSYDDSTLP 516

Query: 474 MLDEN 478
           ++D N
Sbjct: 517 LIDRN 521

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  113 bits (286), Expect = 1e-30
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
            P EF  P+   +M DPV + SG   +R  + +   ++  T P  RQ L    + P   L
Sbjct: 11  APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESMLEPVPEL 69

Query: 331 KNLILQWCEKNNFK 344
           K  I  W  +    
Sbjct: 70  KEQIQAWMREKQSS 83

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  110 bits (278), Expect = 2e-29
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
            P EF  P+   +M DPV + SG   +R  + +   ++  T P  RQTL    + P   L
Sbjct: 26  APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLEPVPEL 84

Query: 331 KNLILQWCEKNN 342
           K  I  W  +  
Sbjct: 85  KEQIQAWMREKQ 96

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  121 bits (303), Expect = 1e-28
 Identities = 44/290 (15%), Positives = 104/290 (35%), Gaps = 10/290 (3%)

Query: 359 EQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS 418
           E++E +  ++E    +K  + +E             +   ++A+ G    L  L      
Sbjct: 453 EKQEMLPEMIELAKFAKQHIPEEHEL---DDVDFINKRITVLANEGITTALCALAKTESH 509

Query: 419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN 478
              E     +  +   +  +  + Q+G + A++ +   G+ + + ++  AL  + +    
Sbjct: 510 NSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP 569

Query: 479 KITIGLSD---GIPPLVDLLQNG-TIRGKKDAVTALFNL-SLNQANKARAIDAGIVLPLM 533
           +++         I PL++LLQ   T     +++ AL NL S+N++ + R I    V  + 
Sbjct: 570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIE 629

Query: 534 NLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF-IETLVEYIREGTPKNKECATAVL 592
             L E +L +   A   L  L    +        +  ++ L     +   +        L
Sbjct: 630 YYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGAL 689

Query: 593 LELGANNSSFILAALQY-GVYEHLIQLTEGGTSRAQRKANALLQLISKSE 641
             + + +       L      + L  L    +   Q +   ++  +  + 
Sbjct: 690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAG 739

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  117 bits (294), Expect = 1e-27
 Identities = 45/304 (14%), Positives = 102/304 (33%), Gaps = 8/304 (2%)

Query: 348 KDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
             D      T    E I + +  L+ ++    +E + ++        E R  +   G + 
Sbjct: 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK 539

Query: 408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQG---AIPAIIEILQSGSTE-ARE 463
            L+++      K   HA  A+  + I  + +   + Q     I  ++ +LQ   T     
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599

Query: 464 NSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR 522
            S  AL +L+ + +  +  I    G+  +   L    +   + A   L NL +++     
Sbjct: 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659

Query: 523 AIDAGIVLP-LMNLLEERNLGMVDEALSILLLLATHPEGRHK--IGQLSFIETLVEYIRE 579
                  +  L  L E+ +          L ++ +      +  +   S+++ L   I  
Sbjct: 660 FEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIAN 719

Query: 580 GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK 639
            +P  +     ++L +            +  + E L  L +       +      Q ++ 
Sbjct: 720 PSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAA 779

Query: 640 SEHL 643
           +E  
Sbjct: 780 AERY 783

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  113 bits (283), Expect = 2e-28
 Identities = 37/193 (19%), Positives = 75/193 (38%), Gaps = 23/193 (11%)

Query: 367 LVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHA 424
            V  L +          A   I+    +  E R  +     I  L+QLL   +  +    
Sbjct: 13  AVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAV 72

Query: 425 VTAVLNLSI-DESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITI 482
             A+ NL   D  NK  +A+   +P ++++L Q+   E ++     L++LS  D+ K  +
Sbjct: 73  CGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132

Query: 483 GLSDGIPPLVDLL---QNGTIRGKKD-------------AVTALFNLSLNQANKARAIDA 526
            +++ +  L + +    +G   G                    L N+S   A+  +A+  
Sbjct: 133 -ITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRR 191

Query: 527 --GIVLPLMNLLE 537
             G++  L++ + 
Sbjct: 192 CDGLIDSLVHYVR 204

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  109 bits (274), Expect = 3e-27
 Identities = 36/175 (20%), Positives = 68/175 (38%), Gaps = 24/175 (13%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILE 422
           I+ L++ L     +VQ+     +R L  E+ +N++ +A+   +P L+Q+L    D +  +
Sbjct: 54  ILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKK 113

Query: 423 HAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEAR---------------ENSAA 467
                + NLS ++  K L+  +  +     I+   S                    N   
Sbjct: 114 QITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173

Query: 468 ALFSLSML-DENKITIGLSDG-IPPLVDLLQNGTIRGKKD------AVTALFNLS 514
            L ++S    + +  +   DG I  LV  ++      + D       V  L NLS
Sbjct: 174 CLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 73.4 bits (180), Expect = 8e-15
 Identities = 31/208 (14%), Positives = 72/208 (34%), Gaps = 21/208 (10%)

Query: 444 QGAIPAIIEILQSGST--EARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTI 500
           +  +   + +L++          +A  +        E +  +    GI  L+ LL+    
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 501 RGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHP 558
             ++    AL NL   +  NK    +   V  L+ +L++ R+L    +   +L  L+++ 
Sbjct: 67  DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126

Query: 559 EGRHKI--GQLSFIETLVEYIREGTPKNK-------------ECATAVLLELGANNSSFI 603
           + ++ +    L  +   +     G P+                  T  L  + +  +   
Sbjct: 127 KLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGR 186

Query: 604 LAALQY-GVYEHLIQLTEGGTSRAQRKA 630
            A  +  G+ + L+    G  +  Q   
Sbjct: 187 KAMRRCDGLIDSLVHYVRGTIADYQPDD 214

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  104 bits (262), Expect = 3e-27
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQ-TFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
              EFL PI   +M DPV++ S + T +R ++ +   S+  T P  R  L    I PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTE 77

Query: 330 LKNLILQWCEKN 341
           LK  I +W  + 
Sbjct: 78  LKEKIQRWLAER 89

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score =  106 bits (266), Expect = 5e-24
 Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 14/134 (10%)

Query: 216 AIRNLVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEF 275
           A+  L ++ G  S E I+++++  NK ++    +    L+               +P EF
Sbjct: 845 AVDILGRKTGLASPEFIEKLLNFANKAEEQRKADEEEDLE------------YGDVPDEF 892

Query: 276 LCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLI 334
           L P+   IM+DPVI+  S    +R +++    S+  T P  R  L    + PN  L+  I
Sbjct: 893 LDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDS-TDPFNRMPLKLEDVTPNEELRQKI 951

Query: 335 LQWCEKNNFKLPKK 348
           L + ++   +   K
Sbjct: 952 LCFKKQKKEEAKHK 965

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 88.1 bits (218), Expect = 2e-19
 Identities = 35/182 (19%), Positives = 68/182 (37%), Gaps = 1/182 (0%)

Query: 160 LRRAKRRTDTQDIELAMDMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRN 219
           L+RA      Q +    D+       + +  +     R+ ++  LH+           R 
Sbjct: 95  LQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERE 154

Query: 220 LVKERGSQSSESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPI 279
           L + + +         I       +    +    +D+    ++  K     IP      I
Sbjct: 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFS-QVDEKRKKRDIPDYLCGKI 213

Query: 280 TLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE 339
           + E+MR+P I  SG T++R+ +++         P TR  L    + PN A+K +I  +  
Sbjct: 214 SFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFIS 273

Query: 340 KN 341
           +N
Sbjct: 274 EN 275

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 87.4 bits (216), Expect = 4e-19
 Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 4/177 (2%)

Query: 367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAV 425
           +   L +    ++  A + I   S+     +  +   GA+  L++LL       +   A+
Sbjct: 87  VGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKAL 146

Query: 426 TAVLNLSID-ESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIG 483
            A+  L  + E+      +      ++  +Q    + +  SA  L +L +   E+K T+ 
Sbjct: 147 FAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206

Query: 484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN 540
               +  LV L++       +  + AL +L  +     R       L L  LL  R 
Sbjct: 207 SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP-ELGLEELLRHRC 262

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 70.4 bits (172), Expect = 2e-13
 Identities = 34/253 (13%), Positives = 73/253 (28%), Gaps = 45/253 (17%)

Query: 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDS 418
            +    +  E   ++  + ++ A+  +  L  EN +N         +  LV + L    +
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAA 96

Query: 419 KILEHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSM-L 475
            +   A   +        + +  +   GA+  ++ +L        R  +  A+  L    
Sbjct: 97  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 156

Query: 476 DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNL 535
           +   +     DG   L+  +Q    + K  +   L NL                      
Sbjct: 157 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL---------------------- 194

Query: 536 LEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL 595
                             L  HPE +  +  +  ++ LV  +R       E     L  L
Sbjct: 195 ------------------LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSL 236

Query: 596 GANNSSFILAALQ 608
             +    +    +
Sbjct: 237 VTDFPQGVRECRE 249

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 78.5 bits (193), Expect = 5e-18
 Identities = 20/92 (21%), Positives = 37/92 (40%), Gaps = 12/92 (13%)

Query: 272 PHEFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHR-----TCPKT---RQTLAHL 322
              F CPIT E M+ PV     G T+E +++ +  +S  +      CP+       +   
Sbjct: 5   SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS 64

Query: 323 SIAPNYALKNLILQWCEKNNFKLPKKDDSETS 354
            +  + AL+  I    +K +      +   +S
Sbjct: 65  DLIQDEALRRAIENHNKKRH---RHSESGPSS 93

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 78.4 bits (192), Expect = 4e-15
 Identities = 80/486 (16%), Positives = 147/486 (30%), Gaps = 146/486 (30%)

Query: 60  VRRMKLLLPLIDEIRELDTPISETN-----M---------AALC---------------- 89
           V R++  L L   + EL       N     +           +C                
Sbjct: 131 VSRLQPYLKLRQALLELR---PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 90  ---NLKKALVVAKKLLKLCNEGSKIYLALD--MEIVIIRFHAVCEKLSA---------AL 135
              N      V + L KL  +    + +       + +R H++  +L            L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 136 DGLDFDELGVSD-EVKEQVELMC--LQLRRAKRRTD------TQDIELAMDMMVVFSKNE 186
             L  +   V + +      L C  L   R K+ TD      T  I L     +  + +E
Sbjct: 248 LVLL-N---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTPDE 302

Query: 187 DRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMIDLLNKFKQVA 246
            +         L K ++    +DL  E +          S  +ESI+  +   + +K V 
Sbjct: 303 VK-------SLLLKYLDC-RPQDLPREVLTTNPRRL---SIIAESIRDGLATWDNWKHVN 351

Query: 247 GMEITNVLD------DPIVPKMLGKSLSLVIPHEFLCPI-TLEIM------RDPVIIASG 293
             ++T +++      +P   + +   LS V P     P   L ++       D +++   
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS-VFPPSAHIPTILLSLIWFDVIKSDVMVVV-- 408

Query: 294 QTFERES-VQKWFDSN----H----RTCPKTRQTLA-HLSIAPNYALKNLILQWCEKNNF 343
               + S V+K    +             K     A H SI  +Y   N+   +   ++ 
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---NIPKTFD-SDDL 464

Query: 344 KLPKKDD------------SETSECTA------------EQK-----------EEIVSLV 368
             P  D              E  E               EQK             I++ +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524

Query: 369 EQLSSSKLEVQKEAVRKIRLLSK-----ENPENRILIADCGAIPPLVQL-LPYPDSKILE 422
           +QL   K  +     +  RL++         E  ++ +    +   +++ L   D  I E
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL---LRIALMAEDEAIFE 581

Query: 423 HAVTAV 428
            A   V
Sbjct: 582 EAHKQV 587

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.6 bits (151), Expect = 3e-10
 Identities = 83/520 (15%), Positives = 163/520 (31%), Gaps = 122/520 (23%)

Query: 167 TDTQDIELAM-DMMVVFSKNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKERG 225
            +T + +    D++ VF      N D   V+ + K I   + E++        +++  + 
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--LSKEEID-------HIIMSK- 58

Query: 226 SQSSESIQQMID-LLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLC-PITLEI 283
             +     ++   LL+K +++    +  VL                  ++FL  PI  E 
Sbjct: 59  -DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---------------YKFLMSPIKTE- 101

Query: 284 MRDPVIIASGQTFERE----SVQKWFDSNHRTCPKT----RQTLAHLSIAPNYAL----- 330
            R P ++      +R+      Q  F   + +  +     RQ L  L  A N  +     
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQV-FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG 160

Query: 331 --KN-LILQWC------EKNNFKL----PKKDDSETSECTAEQK------EEIVSLVEQL 371
             K  + L  C       K +FK+     K  +S  +     QK          S  +  
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH-AVTA-VL 429
           S+ KL +        RLL  +  EN +L+         VQ     ++K      ++  +L
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLN------VQ-----NAKAWNAFNLSCKIL 269

Query: 430 NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSD--- 486
             +  +     ++        ++      T   E    +L          +     D   
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DE--VKSLLL------KYLDCRPQDLPR 320

Query: 487 ---GIPPLV-----DLLQNGTIRGK------KDAVTALFNLSLNQAN--------KARAI 524
                 P       + +++G            D +T +   SLN              ++
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 525 ---DAGIVLPLMNLL----EERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEY 576
               A I   L++L+     + ++ +V   L    L+   P E    I  +     L   
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--ELKVK 438

Query: 577 IREGTPKNKECATAVLLELGANNSSFILAAL-QYGVYEHL 615
           +      ++       +    ++   I   L QY  Y H+
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-FYSHI 477

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 71.5 bits (174), Expect = 6e-14
 Identities = 34/238 (14%), Positives = 79/238 (33%), Gaps = 21/238 (8%)

Query: 124 FHAVCEKLSAALDGLDFDELGVSDEVKEQVELMCLQLRRAKRRTDTQDIELAMDMMVVFS 183
           +  + E ++  +D      +G+ ++V +        L   +  +++ D  +         
Sbjct: 38  YKQIDETINQLVDSTSPSTIGIEEQVADITSTY-KLLSTYESESNSFDEHI--------- 87

Query: 184 KNEDRNADIAIVERLAKKINLHTTEDLKYETIAIRNLVKE---RGSQSSESIQQMIDLLN 240
             +D   +         +I+L T +  +   +    L +      +    ++    D L 
Sbjct: 88  --KDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMPTPEPATMVNNTDTLK 145

Query: 241 KFKQVAGM--EITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIAS-GQTFE 297
             K +  +  + T V+ D   P             E  CPIT +    P+I       F+
Sbjct: 146 ILKVLPYIWNDPTCVIPDLQNPADEDDLQIEGGKIELTCPITCKPYEAPLISRKCNHVFD 205

Query: 298 RESVQKWFD-SNHRTCPKT--RQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSE 352
           R+ +Q +      R CP+    Q ++      +  ++        K + +  K+    
Sbjct: 206 RDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQEQDKRSSQA 263

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 58.1 bits (141), Expect = 3e-11
 Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 274 EFLCPITLEIMRDPVI-IASGQTFERESVQKWFDSNHRTCPKTRQTL 319
             LC I+ ++ R PV+   S   FE+  ++++        P T + L
Sbjct: 3   HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG-NDPITNEPL 48

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 34/200 (17%), Positives = 67/200 (33%), Gaps = 36/200 (18%)

Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL 454
            N   I     I  L + +        +  V  + N++  ++    +AQQGA+  I+E L
Sbjct: 448 FNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL 507

Query: 455 QSGSTEARENSAAALFSLSMLDENKITI-----------GLSDGIPPLVDLLQNGTIRGK 503
            +              +L+     ++ I              + IP L +LL   T    
Sbjct: 508 ANKQDIGEPIRILGCRALT-----RMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDD 562

Query: 504 K--------------DAVTALFNLSLNQAN------KARAIDAGIVLPLMNLLEERNLGM 543
                          +A+ AL NL+ ++ +      K           + NL+ + N+ +
Sbjct: 563 NPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPL 622

Query: 544 VDEALSILLLLATHPEGRHK 563
               L ++  + +HP     
Sbjct: 623 QRSTLELISNMMSHPLTIAA 642

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 35/246 (14%), Positives = 81/246 (32%), Gaps = 35/246 (14%)

Query: 348 KDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
           K+D          + E++S +++   +     K+ V +I      +      +A  GA+ 
Sbjct: 442 KEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVK 501

Query: 408 PLVQLL---PYPDSKILEHAVTAVLNLSIDESNKRLI----AQQGAIPAIIEILQSGSTE 460
            +++ L         I      A+  + I  +N  LI    +   AIP + E+L   +  
Sbjct: 502 IILEYLANKQDIGEPIRILGCRALTRMLIF-TNPGLIFKKYSALNAIPFLFELLPRSTPV 560

Query: 461 AREN--------------SAAALFSLSMLDEN------KITIGLSDGIPPLVDLLQNGTI 500
                             +  AL +L+  + +      K  +        + +L+ +  +
Sbjct: 561 DDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENV 620

Query: 501 RGKKDAVTALFNLSLNQANKARAIDAG-------IVLPLMNLLEERNLGMVDEALSILLL 553
             ++  +  + N+  +    A                 L+ LL+  ++       +I   
Sbjct: 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFAN 680

Query: 554 LATHPE 559
           +AT   
Sbjct: 681 IATTIP 686

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 54.4 bits (131), Expect = 1e-09
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 15/95 (15%)

Query: 271 IPHEFLCPITLEIMRDPVIIAS-GQTFERESVQK-WFDSNHRTCPKTRQTLAHL-SIAPN 327
           IP E LC I  +IM D V+I   G ++  E ++    +S+  TCP   Q      ++  N
Sbjct: 10  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 328 YALKNLILQWCEKNNFKLPKKDDSETSECTAEQKE 362
             L+  +      NNFK      +ET      +K+
Sbjct: 70  KFLRQAV------NNFK------NETGYTKRLRKQ 92

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 59.7 bits (144), Expect = 2e-09
 Identities = 57/290 (19%), Positives = 104/290 (35%), Gaps = 41/290 (14%)

Query: 362 EEIVSLVEQLSSSKL-EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP--YPDS 418
           E I  L ++++SS L + ++ AVR ++ LSK+      L     A+  L+ +L     DS
Sbjct: 21  ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDS 76

Query: 419 KILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN 478
           +I+ +A+  + N+  ++                   +    E      +        +  
Sbjct: 77  EIIGYALDTLYNIISND-------------------EEEEVEENSTRQSEDLGSQFTEI- 116

Query: 479 KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI---DAGIVLPLMNL 535
              I   + +  L+ LL+      +   V  L +L      + + I       V  LM+L
Sbjct: 117 --FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174

Query: 536 LEERNLGMVDEALSILLLLATHPEGRHKIGQLS-FIETLVEYIR-EGTPKNK---ECATA 590
           L +    + ++ + +L  L        KI       E L++ I  EG        E    
Sbjct: 175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLI 234

Query: 591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSR----AQRKANALLQL 636
           +L  L  NN+S      +    + +    E G       AQ+  N  L L
Sbjct: 235 LLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLML 284

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 271 IPHEFLCPITLEIMRDPVIIAS-GQTFERESVQKWFD-SNHRTCPKTRQTL 319
           IP E LC I  +IM D V+I   G ++  E ++     S+  TCP   Q  
Sbjct: 12  IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQND 62

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 54.6 bits (131), Expect = 4e-09
 Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 1/81 (1%)

Query: 255 DDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPK 314
           D+ +   + G +    +   F+C    E++  PV         ++ +Q+ F +   +CP 
Sbjct: 59  DEVLSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPA 118

Query: 315 TRQTLAH-LSIAPNYALKNLI 334
            R  L     + PN  L+ L+
Sbjct: 119 CRHDLGQNYIMIPNEILQTLL 139

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 53.4 bits (128), Expect = 7e-09
 Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH-LSIAPNYALKN 332
            F C    E++  P+         ++ + + F +   +CP  R  L    ++  N  L+ 
Sbjct: 52  TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQT 111

Query: 333 LILQ 336
           ++ Q
Sbjct: 112 VLNQ 115

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 261 KMLGKSLSLV--IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQT 318
           ++ G  +     +  ++ CPI L  +R+ V    G  F +  + K        CP   + 
Sbjct: 3   EIQGYDVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEI 62

Query: 319 LAHLSIAPNYALKNLILQ 336
           L    + P+   K  IL 
Sbjct: 63  LLENQLFPDNFAKREILS 80

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 259 VPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQT 318
           +PK    SLS     E  C I +EI+ +PV +    T  +   Q   +     CP  R+ 
Sbjct: 5   LPKDAIPSLS-----ECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRR 59

Query: 319 LAHLSIAP-------NYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEI 364
           ++  +          N  L  +I +   +   +   +   + SE  A+  + +
Sbjct: 60  VSSWTRYHTRRNSLVNVELWTIIQKHYPR---ECKLRASGQESEEVADDYQPV 109

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 3/102 (2%)

Query: 271 IPHEFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCPKTRQTLAHL-SIAPNY 328
           +  E +CPI L+++++ +        F  + +     S ++ CP  R+ L    S+ P+ 
Sbjct: 51  LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDP 110

Query: 329 ALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQ 370
               LI +    +  +     +   +       ++ +S   +
Sbjct: 111 NFDALISK-IYPSRDEYEAHQERVLARINKHNNQQALSHSIE 151

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 48.6 bits (116), Expect = 2e-07
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 271 IPHEFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
           I     C I  E     +II      +    ++K+  S    CP    T+    +  N  
Sbjct: 19  IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFL-SYKTQCPTCCVTVTEPDLKNNRI 77

Query: 330 LKNLILQW 337
           L  L+   
Sbjct: 78  LDELVKSL 85

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.3 bits (115), Expect = 2e-07
 Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 1/82 (1%)

Query: 271 IPHEFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
           I   F C I +E +RD  +     +      +++W       CP  R  L    +     
Sbjct: 19  IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 330 LKNLILQWCEKNNFKLPKKDDS 351
            + +  Q        L K +++
Sbjct: 79  AEEVTQQLDTLQLCSLTKHEEN 100

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNH-----RTCPKTRQTLAHLSIAPNY 328
           E  CPI LE++++PV      +F R  +   ++SN        CP  R      ++ PN 
Sbjct: 19  EVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNL 78

Query: 329 ALKNLI 334
            + N++
Sbjct: 79  HVANIV 84

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.5 bits (115), Expect = 6e-07
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 265 KSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI 324
             ++ V+ +E  C I  E   + V +    +F    + +W       CP  R+ +   S 
Sbjct: 55  SHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIK--SK 111

Query: 325 APNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEE 363
             +  L N I +        L  +          E+K +
Sbjct: 112 TYSLVLDNCINKMVN----NLSSEVKERRIVLIRERKAK 146

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 47.6 bits (113), Expect = 7e-07
 Identities = 23/114 (20%), Positives = 36/114 (31%), Gaps = 18/114 (15%)

Query: 256 DPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKT 315
             +  K+L             C I   I+ DPV  +    F R  + +        CP  
Sbjct: 5   IHLSTKLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSC 64

Query: 316 RQTL--AHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSL 367
           R       L  +P  +  N++               +S   +C A+   E VSL
Sbjct: 65  RYPCFPTDL-ESPVKSFLNIL---------------NSLMVKCPAQDCNEEVSL 102

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 49.7 bits (118), Expect = 8e-07
 Identities = 34/208 (16%), Positives = 77/208 (37%), Gaps = 17/208 (8%)

Query: 358 AEQKEEIV-SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP 416
           A+  E ++  L+E L      V K A+  I +++K   +          +  L  LL   
Sbjct: 27  AKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-----LYEPMLKKLFSLLKKS 81

Query: 417 DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD 476
           ++  L   +         E  + +   +  IP +    + G  + + N + AL  ++  +
Sbjct: 82  EAIPLTQEIAKAFGQMAKEKPELV---KSMIPVLFANYRIGDEKTKINVSYALEEIAKAN 138

Query: 477 ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL 536
              +    +  +   + +L +     K  A+  +  +  N            +  ++NLL
Sbjct: 139 PMLM----ASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP----FLPRIINLL 190

Query: 537 EERNLGMVDEALSILLLLATHPEGRHKI 564
            + +  +   A+  L+ LAT  +   K+
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKV 218

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 46.3 bits (110), Expect = 2e-06
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLAHLSIAPNYALK 331
              CPI LE++++PV       F +  + K  +       CP  +  +   S+  +    
Sbjct: 21  ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 332 NLI 334
            L+
Sbjct: 81  QLV 83

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 6/49 (12%), Positives = 17/49 (34%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319
           +  ++ C     ++  P     G  F    +     S+   C   ++++
Sbjct: 12  VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 46.2 bits (109), Expect = 5e-06
 Identities = 16/66 (24%), Positives = 26/66 (39%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
           +  ++ CPI L  +R+ V    G  F +  + K        CP   + L    + P+   
Sbjct: 15  LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 331 KNLILQ 336
           K  IL 
Sbjct: 75  KREILS 80

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Length = 79

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 14/67 (20%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHR------TCPKTRQTLAHLSIAPN 327
           E  CPI LE++ +P+ +  G +  R  +               +CP    + +   +  N
Sbjct: 12  EVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQAN 71

Query: 328 YALKNLI 334
             L N++
Sbjct: 72  QHLANIV 78

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
               C I L+    PV +     F    V+       R C   RQ +    +    +
Sbjct: 14  TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKR-CALCRQEIPEDFLDSGPS 69

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 43.4 bits (103), Expect = 8e-06
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNH-----RTCPKTRQTLAHLSIAPNY 328
           E  CPI LE++  P+ +  G +F +  +      +       +CP  R +    +I PN 
Sbjct: 19  EVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNR 78

Query: 329 ALKNLI 334
            + N++
Sbjct: 79  HVANIV 84

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 50/205 (24%)

Query: 367 LVEQLSSSKLEVQKEAVRK-------------IRLLSKENPENRI-------LIADCGAI 406
            ++ L      V++ A                I+ L  E+   R         I D  A+
Sbjct: 24  YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV 83

Query: 407 PPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
            PL++ L   D  + + A  A+            I  + A+  +I+ L+      R  +A
Sbjct: 84  EPLIKALKDEDGWVRQSAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAA 133

Query: 467 AALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
            AL            IG    + PL+  L++     ++ A  AL  +             
Sbjct: 134 FALGE----------IGDERAVEPLIKALKDEDGWVRQSAADALGEIG----------GE 173

Query: 527 GIVLPLMNLLEERNLGMVDEALSIL 551
            +   +  L E         A++ L
Sbjct: 174 RVRAAMEKLAETGTGFARKVAVNYL 198

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 43/235 (18%), Positives = 80/235 (34%), Gaps = 59/235 (25%)

Query: 392 ENPENR----ILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAI 447
            +P+       L AD   +   ++ L      +   A  A+            I  + A+
Sbjct: 3   SHPQFEKAAAPLRADPEKVEMYIKNLQDDSYYVRRAAAYAL----------GKIGDERAV 52

Query: 448 PAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ--NGTIRGKKD 505
             +I+ L+      R  +A AL            IG    + PL+  L+  +G +R  + 
Sbjct: 53  EPLIKALKDEDAWVRRAAADAL----------GQIGDERAVEPLIKALKDEDGWVR--QS 100

Query: 506 AVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN----------LGMV--DEALSILLL 553
           A  AL  +        RA++     PL+  L++ +          LG +  + A+  L+ 
Sbjct: 101 AAVALGQI-----GDERAVE-----PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIK 150

Query: 554 LATHPEG--RH-------KIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN 599
                +G  R        +IG       + +    GT   ++ A   L    + N
Sbjct: 151 ALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 36/205 (17%), Positives = 65/205 (31%), Gaps = 50/205 (24%)

Query: 367 LVEQLSSSKLEVQKEAVRK-------------IRLLSKENPENRILIADC-------GAI 406
            ++ L      V++ A                I+ L  E+   R   AD         A+
Sbjct: 19  YIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAV 78

Query: 407 PPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
            PL++ L   D  + + A  A+            I  + A+  +I+ L+      R  +A
Sbjct: 79  EPLIKALKDEDGWVRQSAAVALGQ----------IGDERAVEPLIKALKDEDWFVRIAAA 128

Query: 467 AALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
            AL            IG    + PL+  L++     ++ A  AL  +             
Sbjct: 129 FALGE----------IGDERAVEPLIKALKDEDGWVRQSAADALGEIG----------GE 168

Query: 527 GIVLPLMNLLEERNLGMVDEALSIL 551
            +   +  L E         A++ L
Sbjct: 169 RVRAAMEKLAETGTGFARKVAVNYL 193

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.8 bits (100), Expect = 5e-05
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 260 PKMLGKSLSLV---IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTR 316
               G S +L+   +  ++LC     ++R P     G  +    +     S  + C    
Sbjct: 14  LLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACV 73

Query: 317 QTL 319
              
Sbjct: 74  HEG 76

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 274 EFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCP----KTRQTLAHLSIAPNY 328
             +C +      D   I     +F +  + ++ +++ + CP    +  +T   L+I  + 
Sbjct: 15  HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDK 73

Query: 329 ALKNLILQ 336
            L++++ +
Sbjct: 74  TLQDIVYK 81

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 1/43 (2%)

Query: 275 FLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQ 317
           F C I  +  ++PV+      F      + F      C    Q
Sbjct: 16  FRCFICRQAFQNPVVTKCRHYFCESCALEHFR-ATPRCYICDQ 57

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQT 318
           E +CPI L+I++ PV I  G  F  + + +  ++      CP  + +
Sbjct: 20  EVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTS 66

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 274 EFLCPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN 327
             LC I    + D   I     TF +  + + F  +   CPK    +        
Sbjct: 15  YILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS-NRCPKCNIVVHQTQPLSG 68

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 19/125 (15%), Positives = 42/125 (33%), Gaps = 29/125 (23%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRK------------IRLLSKENPENRILIADC-------G 404
           +V     ++     V+++                +  LS E+   R   A          
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSRMGDEAFEPLLESLSNEDWRIRGAAAWIIGNFQDER 73

Query: 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEAREN 464
           A+ PL++LL      +   A  ++            I  +    A+ ++ ++G+  AR+ 
Sbjct: 74  AVEPLIKLLEDDSGFVRSGAARSLEQ----------IGGERVRAAMEKLAETGTGFARKV 123

Query: 465 SAAAL 469
           +   L
Sbjct: 124 AVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 31/147 (21%)

Query: 405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEAREN 464
            + P    +   +  +     TA+  +  DE          A   ++E L +     R  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMG-DE----------AFEPLLESLSNEDWRIRGA 61

Query: 465 SAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI 524
           +A  + +                + PL+ LL++ +   +  A  +L           +  
Sbjct: 62  AAWIIGN----------FQDERAVEPLIKLLEDDSGFVRSGAARSL----------EQIG 101

Query: 525 DAGIVLPLMNLLEERNLGMVDEALSIL 551
              +   +  L E         A++ L
Sbjct: 102 GERVRAAMEKLAETGTGFARKVAVNYL 128

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 58

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 262 MLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRT--CP 313
                    +  E  C + LE +++PVII  G  F +  + +W++   R   CP
Sbjct: 3   SGSSGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCP 56

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 39.4 bits (91), Expect = 6e-04
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 274 EFLCPITLEIMRD-------PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326
              CPI ++   +        V    G  F  + ++    + + TCP  R+ + H    P
Sbjct: 7   TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNAN-TCPTCRKKINHKRYHP 65

Query: 327 NYALKNLILQWCEKNNFKLPKKDDSE--TSEC 356
            Y     +      + +    ++     ++EC
Sbjct: 66  IYIGSGTVSCPICMDGYSEIVQNGRLIVSTEC 97

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 37.0 bits (86), Expect = 9e-04
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 262 MLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRT--CP 313
           M        +  E +CPI L+I++ PV I  G  F  + + +  +++     CP
Sbjct: 8   MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCP 61

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	643
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.94
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.93
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.91
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.89
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.88
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.87
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.87
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.83
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.81
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.8
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.8
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.79
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.79
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.79
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.73
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.67
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.57
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.56
3grl_A	651	General vesicular transport factor P115; vesicle t	99.54
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.48
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.45
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.45
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.41
3grl_A	651	General vesicular transport factor P115; vesicle t	99.35
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.34
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.32
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.31
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.3
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.29
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.29
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.29
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.29
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.28
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.28
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.28
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.28
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.28
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.27
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.26
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.26
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.26
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.25
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.24
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.22
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.2
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.19
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.17
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.16
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.14
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.14
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.13
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.08
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.05
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.05
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.01
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	98.98
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	98.98
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.94
2ect_A	78	Ring finger protein 126; metal binding protein, st	98.93
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.91
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.89
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.86
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	98.82
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.81
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.8
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	98.8
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	98.79
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.78
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	98.78
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.75
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.75
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	98.73
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.73
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.7
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.7
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.68
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.66
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.59
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.59
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.59
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.57
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.56
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.51
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.48
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.45
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.43
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.37
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.36
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.36
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.36
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.35
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.31
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.31
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.22
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.19
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.18
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.17
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.16
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.16
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.1
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.08
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.07
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.04
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.02
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.0
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.99
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.93
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.88
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.87
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.83
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	97.79
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.66
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.51
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.49
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.43
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.41
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.28
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.18
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.11
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.1
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.05
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.97
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.83
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.79
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	96.74
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.33
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.91
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.82
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	95.42
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.15
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	94.31
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	93.97
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	93.96
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.92
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.73
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.4
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	93.1
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.78
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.64
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	92.62
3nw0_A	238	Non-structural maintenance of chromosomes element	92.47
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.38
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.54
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	91.3
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.9
2x1g_F	971	Cadmus; transport protein, developmental protein,	90.0
2x19_B	963	Importin-13; nuclear transport, protein transport;	89.84
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	89.34
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	89.28
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	89.12
2x19_B	963	Importin-13; nuclear transport, protein transport;	87.73
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	86.32
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	85.24
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	83.79
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	83.66
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	83.45
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	83.12
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	82.72
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	81.97
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	81.82

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.4e-30  Score=274.87  Aligned_cols=263  Identities=21%  Similarity=0.222  Sum_probs=237.6

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhcCCcc-hHHHHHh-
Q 040749          377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLSIDES-NKRLIAQ-  443 (643)
Q Consensus       377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs~~~~-~k~~i~~-  443 (643)
                      ..+.+|++.|.+++. ++++|..|++.|+++.|+.+|.+           .++.+|.+|+++|.||+.+++ +|..+.. 
T Consensus        47 ~~~~~A~~aL~nls~-d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           47 HQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GTHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcC-CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            456689999999996 48999999999999999999952           246789999999999998665 7877764 


Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCcc
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSL-NQAN  519 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n  519 (643)
                      .|+||.|+.+|+++++++++.|+++|.+|+..  +++|..+.+.|+||+|+.+| ++++..+++.|+.+|+||+. .+++
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            56699999999999999999999999999974  57899999999999999975 66788999999999999998 6688


Q ss_pred             hHHHH-HcCChHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749          520 KARAI-DAGIVLPLMNLLEERNL----GMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATA  590 (643)
Q Consensus       520 ~~~lv-~~G~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~  590 (643)
                      +..++ ..|+++.|+++|.++++    .+++.|+++|.||+.    +++++..+.+.|+++.|+.+|++++..++++|++
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence            88888 69999999999987544    489999999999995    8999999999999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +|.+|+.++++....+.+.|+++.|+.++.++++++++.|.+.|++|...
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~  335 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  335 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            99999988899999999999999999999999999999999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=3.5e-30  Score=282.71  Aligned_cols=278  Identities=22%  Similarity=0.260  Sum_probs=245.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLI  441 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i  441 (643)
                      .++.+++.|.+++++.|..|+..|++++.+++.++..+++.|+||.|+.+|+++++.++..|+++|.||+.+ ++++..|
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i   82 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            488999999999999999999999999988888899999999999999999999999999999999999986 8899999


Q ss_pred             HhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc--------cC--------ChhhHH
Q 040749          442 AQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ--------NG--------TIRGKK  504 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~  504 (643)
                      ++.|+|+.|+++|. ++++++++.|+++|++|+..+++|..+++ |++|+|+.+|.        ++        +..+.+
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~  161 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHH
Confidence            99999999999999 88999999999999999999999999999 99999999993        22        345666


Q ss_pred             HHHHHHHHhccCCcchHHHHHc-CChHHHHHHhcc------CChhhHHHHHHHHHHHhCC--------------------
Q 040749          505 DAVTALFNLSLNQANKARAIDA-GIVLPLMNLLEE------RNLGMVDEALSILLLLATH--------------------  557 (643)
Q Consensus       505 ~A~~aL~nLs~~~~n~~~lv~~-G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~--------------------  557 (643)
                      .|+++|+||+.+++++..+++. |+++.|+.+|.+      .+..+++.|+.+|.||+..                    
T Consensus       162 ~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            9999999999988888889997 999999999985      4567899999999999731                    


Q ss_pred             -------------------------------hhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHHHHhcCCHHH---
Q 040749          558 -------------------------------PEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLLELGANNSSF---  602 (643)
Q Consensus       558 -------------------------------~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~~L~~~~~~~---  602 (643)
                                                     +++.+.+++.|+++.|+.+|.++ ++..++.|+++|.+||.++...   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                                           23445667778899999999864 6899999999999999875432   


Q ss_pred             H-HHHH-HCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          603 I-LAAL-QYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       603 ~-~~~~-~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      . +.++ +.|+++.|+.++.++++++++.|.++|++|.+..
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~  362 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence            2 3334 6899999999999999999999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=1.5e-29  Score=280.73  Aligned_cols=279  Identities=20%  Similarity=0.251  Sum_probs=243.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC--cchHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--ESNKR  439 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--~~~k~  439 (643)
                      ..++.||++|.+++++.|..|++.|.+++..++++|..+++.|+||.|+.+|++++..+|++|+++|.||+..  +++|.
T Consensus        48 ~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~  127 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI  127 (584)
T ss_dssp             CCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred             ccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence            5699999999999999999999999999998999999999999999999999999999999999999999984  78999


Q ss_pred             HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc------------------cCCh
Q 040749          440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ------------------NGTI  500 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~------------------~~~~  500 (643)
                      .|++.|+|++|+.+|++ ++.+++++|+++|++||..+++|..|++ +++|+|+.++.                  ..+.
T Consensus       128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~  206 (584)
T 3l6x_A          128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWE  206 (584)
T ss_dssp             HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCH
T ss_pred             HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccH
Confidence            99999999999999997 5789999999999999999999999995 67999999872                  1246


Q ss_pred             hhHHHHHHHHHHhccCCcc-hHHHHH-cCChHHHHHHhcc------CChhhHHHHHHHHHHHhCCh--------------
Q 040749          501 RGKKDAVTALFNLSLNQAN-KARAID-AGIVLPLMNLLEE------RNLGMVDEALSILLLLATHP--------------  558 (643)
Q Consensus       501 ~~~~~A~~aL~nLs~~~~n-~~~lv~-~G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~~--------------  558 (643)
                      .+++.|+++|+||+...++ +..+++ .|+++.|+.+|.+      .+...++.|+.+|.||+...              
T Consensus       207 ~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~  286 (584)
T 3l6x_A          207 SVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAA  286 (584)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-----
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhc
Confidence            8899999999999997755 888888 5667899999975      46678999999999998642              


Q ss_pred             ------------hhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHH---HHH-HHHHCCcHHHHHHHhhc
Q 040749          559 ------------EGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGANNSS---FIL-AALQYGVYEHLIQLTEG  621 (643)
Q Consensus       559 ------------~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~~---~~~-~~~~~g~i~~L~~ll~~  621 (643)
                                  .+.+.+++.++++.|+.+|.. .++.++++|+++|.+||.+...   ... .+.+.++++.|+.++.+
T Consensus       287 ~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s  366 (584)
T 3l6x_A          287 PNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN  366 (584)
T ss_dssp             ---------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC
T ss_pred             ccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC
Confidence                        233445556778889999964 5799999999999999987522   222 33457899999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhhc
Q 040749          622 GTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       622 g~~~~k~~A~~lL~~L~~~~  641 (643)
                      +++++++.|.++|++|+...
T Consensus       367 ~~~~v~~~A~~aL~nLs~~~  386 (584)
T 3l6x_A          367 EHERVVKAASGALRNLAVDA  386 (584)
T ss_dssp             SCHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCh
Confidence            99999999999999998764

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=1.5e-29  Score=274.79  Aligned_cols=261  Identities=21%  Similarity=0.222  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhcCCcc-hHHHHH-hcC
Q 040749          379 QKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLSIDES-NKRLIA-QQG  445 (643)
Q Consensus       379 ~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs~~~~-~k~~i~-~~g  445 (643)
                      +.+|++.|.+++ .++++|..|.+.|++++|+.+|..           .++.++.+|+++|.||+.+++ ++..+. ..|
T Consensus       165 ~~qAv~aL~nls-~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G  243 (458)
T 3nmz_A          165 ICPAVCVLMKLS-FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG  243 (458)
T ss_dssp             THHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHhc-CCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC
Confidence            459999999998 469999999999999999999942           246789999999999998765 676675 456


Q ss_pred             ChHHHHHHhcCCCHHHHHHHHHHHHhcccc--ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhcc-CCcchH
Q 040749          446 AIPAIIEILQSGSTEARENSAAALFSLSML--DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSL-NQANKA  521 (643)
Q Consensus       446 ~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~-~~~n~~  521 (643)
                      +||.|+.+|.++++++++.|+++|.+|+..  +++|..|++.|+||+|+.+| ++++..+++.|+.+|+||+. +++++.
T Consensus       244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~  323 (458)
T 3nmz_A          244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA  323 (458)
T ss_dssp             HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            799999999999999999999999999974  56889999999999999975 56788999999999999998 778888


Q ss_pred             HHH-HcCChHHHHHHhccCCh----hhHHHHHHHHHHHhC----ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHH
Q 040749          522 RAI-DAGIVLPLMNLLEERNL----GMVDEALSILLLLAT----HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVL  592 (643)
Q Consensus       522 ~lv-~~G~v~~Lv~lL~~~~~----~~~~~Al~~L~~La~----~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L  592 (643)
                      .++ ..|+++.|+.+|.+.++    .+++.|+++|.||+.    ++++++.+.+.|+++.|+.+|.+++..++++|+++|
T Consensus       324 ~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          324 DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHH
Confidence            888 79999999999987544    489999999999984    889999999999999999999999999999999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .+|+.++++....+.+.|+++.|+.++.++++++++.|.+.|++|..+
T Consensus       404 ~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          404 WNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            999988899999999999999999999999999999999999999764

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.96  E-value=9e-29  Score=271.44  Aligned_cols=282  Identities=21%  Similarity=0.206  Sum_probs=247.3

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcchH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      ..+.++.|+++|.+++++.|..|++.|++++..++++|..|++.|+||.|+++|+ ++++++++.|+++|.||+.++++|
T Consensus        42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~  121 (457)
T 1xm9_A           42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK  121 (457)
T ss_dssp             HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhH
Confidence            5688999999999999999999999999999888999999999999999999999 889999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHhc--------CC--------CHHHHHHHHHHHHhccccccchhhhhcc-CChHHHHHHhccC---
Q 040749          439 RLIAQQGAIPAIIEILQ--------SG--------STEARENSAAALFSLSMLDENKITIGLS-DGIPPLVDLLQNG---  498 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~--------~~--------~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~-g~i~~Lv~lL~~~---  498 (643)
                      ..+++ |+++.|+.+|.        ++        +.++..+|+++|+||+..++++..+.+. |++++|+.+|+++   
T Consensus       122 ~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  200 (457)
T 1xm9_A          122 EELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA  200 (457)
T ss_dssp             HHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccc
Confidence            99999 99999999993        33        3456669999999999888889999886 9999999888641   


Q ss_pred             --------------------------------------------------------------------------------
Q 040749          499 --------------------------------------------------------------------------------  498 (643)
Q Consensus       499 --------------------------------------------------------------------------------  498 (643)
                                                                                                      
T Consensus       201 ~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  280 (457)
T 1xm9_A          201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY  280 (457)
T ss_dssp             TCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGG
T ss_pred             cCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh
Confidence                                                                                            


Q ss_pred             ----------------ChhhHHHHHHHHHHhccCCcch-----HHHH-HcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          499 ----------------TIRGKKDAVTALFNLSLNQANK-----ARAI-DAGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       499 ----------------~~~~~~~A~~aL~nLs~~~~n~-----~~lv-~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                                      ++..++.|+++|.||+......     ..++ ++|++|.|+++|.+++.+++..|+++|.||+.
T Consensus       281 ~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          281 HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhc
Confidence                            1334556789999998755432     2234 58999999999999999999999999999999


Q ss_pred             ChhhHHHhhcCCcHHHHHHHHhcCCh------HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHH
Q 040749          557 HPEGRHKIGQLSFIETLVEYIREGTP------KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRK  629 (643)
Q Consensus       557 ~~~~~~~i~~~g~i~~Lv~lL~~~s~------~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~  629 (643)
                      +++.+..+.. |+++.|+++|..+++      .+...++.+|.+++.++++....+.+.|+++.|+.++.++ +++++++
T Consensus       361 ~~~~~~~i~~-~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~  439 (457)
T 1xm9_A          361 HPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEA  439 (457)
T ss_dssp             SGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CHHHHHHHHH-hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHH
Confidence            9888877654 799999999997643      5777899999999998988999999999999999999999 9999999


Q ss_pred             HHHHHHHHHhhccC
Q 040749          630 ANALLQLISKSEHL  643 (643)
Q Consensus       630 A~~lL~~L~~~~~~  643 (643)
                      |.++|.++..+.++
T Consensus       440 A~~~L~~~~~~~~l  453 (457)
T 1xm9_A          440 ARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHTTSSSTTC
T ss_pred             HHHHHHHHHcchhh
Confidence            99999999887664

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=4.9e-28  Score=277.18  Aligned_cols=280  Identities=15%  Similarity=0.143  Sum_probs=252.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-----------------------------hhH---HHHHhcCCcH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-----------------------------ENR---ILIADCGAIP  407 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-----------------------------~~r---~~i~~~g~i~  407 (643)
                      +.+.++.|+++|++.+..++..|++.|.+++...+                             .++   ..+++.|++|
T Consensus       419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp  498 (810)
T 3now_A          419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT  498 (810)
T ss_dssp             CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred             ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence            46899999999999999999999999999997542                             123   6788999999


Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh---c
Q 040749          408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG---L  484 (643)
Q Consensus       408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~---~  484 (643)
                      .|+.+|+++++.+|+.|+++|.|++.+++++..+++.|++++|+.+|.++++..+++|+++|.+|+.+.+....+.   .
T Consensus       499 ~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~  578 (810)
T 3now_A          499 ALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRS  578 (810)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhh
Confidence            9999999999999999999999999998999999999999999999999999999999999999987654443332   1


Q ss_pred             cCChHHHHHHhccC-ChhhHHHHHHHHHHhccCC-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 040749          485 SDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLNQ-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH  562 (643)
Q Consensus       485 ~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~  562 (643)
                      .|++|+|+.+|.++ +...+..|+++|.||+..+ +++..++++|+++.|+.++.++++.++..|+++|+||+.+++.+.
T Consensus       579 ~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~  658 (810)
T 3now_A          579 LDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIK  658 (810)
T ss_dssp             HHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHH
T ss_pred             hcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHH
Confidence            47999999999865 4455679999999999875 678889999999999999999999999999999999999999988


Q ss_pred             Hhhc-CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          563 KIGQ-LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ-YGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       563 ~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~-~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+.+ .|+++.|+.++.+.+..++..|+++|.+|+.+++..++.+++ .|+++.|+.++.+++.++|+.|.++|.++..
T Consensus       659 ~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          659 MFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            8886 689999999999999999999999999999988888888888 8999999999999999999999999999865

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=4e-27  Score=262.02  Aligned_cols=280  Identities=20%  Similarity=0.244  Sum_probs=253.8

Q ss_pred             hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749          360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~  437 (643)
                      +.|.+|.||++|+ ++++++|..|+++|.+++..+++++..+++.|+||.|+.+|++++..+++.|+++|+||+.+. ..
T Consensus        98 ~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~  177 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  177 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            4588999999997 456899999999999999999999999999999999999999999999999999999999864 56


Q ss_pred             HHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          438 KRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALF  511 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~  511 (643)
                      +..+.+.|++++|+.+|...+     .....+++++|.+++........+.. .+++|.|+.++.+++..++..|+++|.
T Consensus       178 r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~  257 (510)
T 3ul1_B          178 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  257 (510)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            888889999999999998653     46788999999999987665555544 789999999999999999999999999


Q ss_pred             HhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749          512 NLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       512 nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      +|+..+.++.. +++.|+++.|+.+|.+++..++..|+.+|.|++. ++..+..+.+.|+++.|+.+|.+.++.++..|+
T Consensus       258 ~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~  337 (510)
T 3ul1_B          258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  337 (510)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHH
T ss_pred             HHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHH
Confidence            99987776655 5679999999999999999999999999999977 566778889999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++|.+|+.+++.....+.+.|+++.|+.++.+++.++|+.|.++|.++..
T Consensus       338 ~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          338 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999998864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=1e-26  Score=259.97  Aligned_cols=280  Identities=20%  Similarity=0.237  Sum_probs=255.1

Q ss_pred             hHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749          360 QKEEIVSLVEQLS-SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~-s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~  437 (643)
                      +.+.++.|++.|. +.+++.|..|+++|.+++.++++++..+++.|+||.|+.+|.+++..+++.|+++|+||+.+ +++
T Consensus       117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~  196 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF  196 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence            5689999999997 55699999999999999999999999999999999999999999999999999999999986 567


Q ss_pred             HHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          438 KRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALF  511 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~  511 (643)
                      +..+...|++++|+.+|..++     .....+++++|.+++........+.. .+++|.|+.++.++++.++..|+++|.
T Consensus       197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~  276 (529)
T 3tpo_A          197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  276 (529)
T ss_dssp             HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            888999999999999998653     46788999999999987665555444 789999999999999999999999999


Q ss_pred             HhccCCcchHH-HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749          512 NLSLNQANKAR-AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       512 nLs~~~~n~~~-lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      +|+..+.++.. +++.|+++.|+.+|.+++..++..|+.+|.|++. ++..+..+.+.|+++.|+.+|.+.++.++..|+
T Consensus       277 ~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~  356 (529)
T 3tpo_A          277 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  356 (529)
T ss_dssp             HHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             HhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence            99987776655 6689999999999999999999999999999987 566788889999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++|.+|+.+++.....+.+.|+++.|+.++.+++..+++.|.++|.++..
T Consensus       357 ~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          357 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999998864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=7.6e-28  Score=253.96  Aligned_cols=243  Identities=19%  Similarity=0.219  Sum_probs=219.8

Q ss_pred             hHHHHHHHHHHhcC-----------CCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCCChHHHHHHHHH
Q 040749          360 QKEEIVSLVEQLSS-----------SKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYPDSKILEHAVTA  427 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-----------~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~  427 (643)
                      +.++++.|+.+|.+           .+++.|..|++.|.+++..++.+|..+.. .|+||.|+.+|+++++++++.|+++
T Consensus        71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~a  150 (354)
T 3nmw_A           71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASV  150 (354)
T ss_dssp             HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHH
Confidence            55889999999953           24678999999999999888889988865 5669999999999999999999999


Q ss_pred             HHHhcCC--cchHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccc-cccchhhhh-ccCChHHHHHHhccCCh--
Q 040749          428 VLNLSID--ESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSM-LDENKITIG-LSDGIPPLVDLLQNGTI--  500 (643)
Q Consensus       428 L~nLs~~--~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~-~~g~i~~Lv~lL~~~~~--  500 (643)
                      |.||+..  +++|..|++.|+|+.|+++| ++++.++++.|+.+|++|+. .+++|..|+ ..|++|.|+.+|.+++.  
T Consensus       151 L~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~  230 (354)
T 3nmw_A          151 LRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN  230 (354)
T ss_dssp             HHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSS
T ss_pred             HHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcc
Confidence            9999984  56899999999999999975 66789999999999999998 668899998 68999999999987755  


Q ss_pred             --hhHHHHHHHHHHhcc----CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHh-CChhhHHHhhcCCcHHHH
Q 040749          501 --RGKKDAVTALFNLSL----NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLA-THPEGRHKIGQLSFIETL  573 (643)
Q Consensus       501 --~~~~~A~~aL~nLs~----~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La-~~~~~~~~i~~~g~i~~L  573 (643)
                        .+++.|+++|+||+.    .++++..+++.|+++.|+.+|.+++..+++.|+++|+||+ .+++++..+.+.|+++.|
T Consensus       231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~L  310 (354)
T 3nmw_A          231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSML  310 (354)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHH
Confidence              489999999999996    7788888999999999999999999999999999999999 478999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749          574 VEYIREGTPKNKECATAVLLELGANNSSF  602 (643)
Q Consensus       574 v~lL~~~s~~~~e~A~~~L~~L~~~~~~~  602 (643)
                      +++++++++.+++.|+++|.+|+.+++..
T Consensus       311 v~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          311 KNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            99999999999999999999999987754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=258.40  Aligned_cols=280  Identities=20%  Similarity=0.194  Sum_probs=245.0

Q ss_pred             hhHHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCc----------HHHHHhCCCC
Q 040749          359 EQKEEIVSLVEQLSSS------------KLEVQKEAVRKIRLLSKENPENRILIADCGAI----------PPLVQLLPYP  416 (643)
Q Consensus       359 ~~~~~i~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i----------~~Lv~lL~~~  416 (643)
                      ...+.+|.||+.|+..            +++.|.+|+++|.+++..+++......+.|++          +.+++++.+.
T Consensus        67 ~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  146 (458)
T 3nmz_A           67 RQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH  146 (458)
T ss_dssp             HHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhh
Confidence            4568899999999963            37999999999999999999998888888888          6677778765


Q ss_pred             C--hH-----HHH-------HHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC-----------CCHHHHHHHHHHHHh
Q 040749          417 D--SK-----ILE-------HAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS-----------GSTEARENSAAALFS  471 (643)
Q Consensus       417 d--~~-----~~~-------~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~-----------~~~e~~~~Aa~~L~~  471 (643)
                      +  .+     +++       +|+++|.|++.++++|..|++.|++++|+.+|..           .++.++.+|+++|.+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~n  226 (458)
T 3nmz_A          147 EPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN  226 (458)
T ss_dssp             SSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHH
Confidence            2  11     333       9999999999999999999999999999999952           246789999999999


Q ss_pred             cccccc-chhhhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhccC--CcchHHHHHcCChHHHHHHh-ccCChhhHHH
Q 040749          472 LSMLDE-NKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN--QANKARAIDAGIVLPLMNLL-EERNLGMVDE  546 (643)
Q Consensus       472 Ls~~~~-~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n~~~lv~~G~v~~Lv~lL-~~~~~~~~~~  546 (643)
                      |+..++ ++..+.. .|+||.|+.+|++++..++..|+++|.||+..  ++++..+++.|+++.|+++| .+.+..+++.
T Consensus       227 La~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~  306 (458)
T 3nmz_A          227 LTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKS  306 (458)
T ss_dssp             HHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHH
T ss_pred             HhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHH
Confidence            998765 6666654 57799999999999999999999999999985  46788899999999999986 4467889999


Q ss_pred             HHHHHHHHhC-ChhhHHHhh-cCCcHHHHHHHHhcCCh----HHHHHHHHHHHHHhc---CCHHHHHHHHHCCcHHHHHH
Q 040749          547 ALSILLLLAT-HPEGRHKIG-QLSFIETLVEYIREGTP----KNKECATAVLLELGA---NNSSFILAALQYGVYEHLIQ  617 (643)
Q Consensus       547 Al~~L~~La~-~~~~~~~i~-~~g~i~~Lv~lL~~~s~----~~~e~A~~~L~~L~~---~~~~~~~~~~~~g~i~~L~~  617 (643)
                      |+.+|+||+. +.+++..+. ..|+++.|+.+|.++++    .+++.|+++|.+|+.   .+++....+.+.|+++.|+.
T Consensus       307 A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~  386 (458)
T 3nmz_A          307 VLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQ  386 (458)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHH
Confidence            9999999999 778888888 78999999999997764    489999999999997   68888899999999999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHHH
Q 040749          618 LTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       618 ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ++.+++..+++.|.++|.+|.
T Consensus       387 LL~~~~~~v~~~A~~aL~nLa  407 (458)
T 3nmz_A          387 HLKSHSLTIVSNACGTLWNLS  407 (458)
T ss_dssp             HSSCSCHHHHHHHHHHHHHHH
T ss_pred             HHcCCChHHHHHHHHHHHHHH
Confidence            999999999999999999997

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=2.7e-27  Score=262.79  Aligned_cols=281  Identities=22%  Similarity=0.210  Sum_probs=236.1

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      ..+.|+.||++|.+++.++|..|+++|++|+.. ++++|..|++.|+||.|+.+|++ .+..++++|+.+|+|||.++++
T Consensus        88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~  167 (584)
T 3l6x_A           88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI  167 (584)
T ss_dssp             HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred             HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence            458899999999999999999999999999985 69999999999999999999997 5789999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHhc------------------CCCHHHHHHHHHHHHhcccccc-chhhhhc-cCChHHHHHHhcc
Q 040749          438 KRLIAQQGAIPAIIEILQ------------------SGSTEARENSAAALFSLSMLDE-NKITIGL-SDGIPPLVDLLQN  497 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~------------------~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~-~g~i~~Lv~lL~~  497 (643)
                      |..|+. ++++.|+++|.                  ..+.+++++|+++|+|||..++ ++..+.+ .|+++.||.++++
T Consensus       168 k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~  246 (584)
T 3l6x_A          168 KMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQA  246 (584)
T ss_dssp             HHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred             hHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHH
Confidence            999985 57999999872                  1247899999999999998764 4777776 4556677776643


Q ss_pred             --------------------------------------------------------------------------CChhhH
Q 040749          498 --------------------------------------------------------------------------GTIRGK  503 (643)
Q Consensus       498 --------------------------------------------------------------------------~~~~~~  503 (643)
                                                                                                .++.++
T Consensus       247 ~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~  326 (584)
T 3l6x_A          247 EIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAIL  326 (584)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred             hhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHH
Confidence                                                                                      123344


Q ss_pred             HHHHHHHHHhccCCc-----chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh
Q 040749          504 KDAVTALFNLSLNQA-----NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR  578 (643)
Q Consensus       504 ~~A~~aL~nLs~~~~-----n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~  578 (643)
                      +.|++||.||+....     ++..+.+.|+++.|+++|.+++..++..|+++|.||+.++.++..| ..|+++.|+.+|.
T Consensus       327 E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~~g~ip~LV~LL~  405 (584)
T 3l6x_A          327 EASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHAIPNLVKNLP  405 (584)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-HHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-HhCCHHHHHHHhc
Confidence            555566666654321     1222334788999999999999999999999999999998888776 6799999999998


Q ss_pred             cC--------ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHhhcc
Q 040749          579 EG--------TPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG--TSRAQRKANALLQLISKSEH  642 (643)
Q Consensus       579 ~~--------s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~~~~~  642 (643)
                      ++        +..+...|+++|.+|+..++.+.+.+.+.|+++.|+.++.++  .+.+++.|..+|.+|..+.+
T Consensus       406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~e  479 (584)
T 3l6x_A          406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKE  479 (584)
T ss_dssp             SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSHH
T ss_pred             CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCHH
Confidence            76        457788999999999999999999999999999999999987  89999999999999986643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=4.8e-27  Score=269.03  Aligned_cols=282  Identities=16%  Similarity=0.144  Sum_probs=253.8

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      +.+.++.|+++|.++++++|.+|++.|.+++ .++++|..+++.|++|+|+.+|.+++...++.|+++|.||+.+.+...
T Consensus       493 eaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~  571 (810)
T 3now_A          493 NEGITTALCALAKTESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEV  571 (810)
T ss_dssp             HTTHHHHHHHHHTCCCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             HCcCHHHHHHHHcCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhh
Confidence            4588999999999999999999999999999 567899999999999999999999999999999999999987544333


Q ss_pred             HH---HhcCChHHHHHHhcCC-CHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          440 LI---AQQGAIPAIIEILQSG-STEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       440 ~i---~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      .+   ...|++++|+.+|.++ +...+..|+++|.||+.. ++++..+.+.|+++.|+.+|.++++.+++.|+++|.||+
T Consensus       572 ~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa  651 (810)
T 3now_A          572 SFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLV  651 (810)
T ss_dssp             HTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHT
T ss_pred             hhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            22   1246999999999866 455667899999999977 578888999999999999999999999999999999999


Q ss_pred             cCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhc-CCcHHHHHHHHhcCChHHHHHHHHH
Q 040749          515 LNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQ-LSFIETLVEYIREGTPKNKECATAV  591 (643)
Q Consensus       515 ~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~-~g~i~~Lv~lL~~~s~~~~e~A~~~  591 (643)
                      .+++.+..+++ .|+++.|+.++.+.+..++..|+++|+||+. ++...+.+++ .|+++.|+.++.+++...+..|+++
T Consensus       652 ~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~a  731 (810)
T 3now_A          652 MSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI  731 (810)
T ss_dssp             TSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             CChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHH
Confidence            99998888886 7999999999999999999999999999998 7888888888 8999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC---CHHHHHHHHHHHHHHHhhcc
Q 040749          592 LLELGANNSSFILAALQYGVYEHLIQLTEGG---TSRAQRKANALLQLISKSEH  642 (643)
Q Consensus       592 L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g---~~~~k~~A~~lL~~L~~~~~  642 (643)
                      |.+++.++++....+.+.|+++.|+.++...   ++++.+.|...|.++-++..
T Consensus       732 L~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI  785 (810)
T ss_dssp             HHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            9999998888889999999999999998654   78999999999999876543

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=2.3e-25  Score=248.77  Aligned_cols=281  Identities=21%  Similarity=0.221  Sum_probs=257.2

Q ss_pred             hHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749          360 QKEEIVSLVEQLSSSK-LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~  437 (643)
                      ..+.++.|++.|.+++ +.+|..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus       115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~  194 (528)
T 4b8j_A          115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC  194 (528)
T ss_dssp             HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhh
Confidence            4578999999999876 99999999999999988899999999999999999999999999999999999999986 456


Q ss_pred             HHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+...|+++.|+.+| .+.++.++..|+++|.+|+............|+++.|+.+|.++++.++..|+++|.+|+..
T Consensus       195 ~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  274 (528)
T 4b8j_A          195 RDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG  274 (528)
T ss_dssp             HHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence            88888999999999999 56789999999999999998765555555689999999999999999999999999999987


Q ss_pred             Ccch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcC-ChHHHHHHHHHHH
Q 040749          517 QANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREG-TPKNKECATAVLL  593 (643)
Q Consensus       517 ~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~-s~~~~e~A~~~L~  593 (643)
                      .+++ ..+++.|+++.|+.+|.++++.++..|+.+|.+|+. ++..+..+.+.|+++.|+.+|.++ ++.++..|+++|.
T Consensus       275 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~  354 (528)
T 4b8j_A          275 TNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS  354 (528)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            7665 457789999999999999999999999999999998 566788888999999999999998 8999999999999


Q ss_pred             HHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          594 ELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       594 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +|+.+++.....+.+.|+++.|+.++.++++.++..|.++|.++...
T Consensus       355 nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          355 NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence            99998888888889999999999999999999999999999998764

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.94  E-value=6.9e-26  Score=252.06  Aligned_cols=278  Identities=19%  Similarity=0.183  Sum_probs=245.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhh-ccCchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcC-CcchH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLS-KENPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSI-DESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~-~~~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~-~~~~k  438 (643)
                      ..++.+|+.+.|++++.|.+|+..+|.+. ++.......+++.|+||.|+++|++. ++.+|..|+++|.|++. +++++
T Consensus        57 ~~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~  136 (510)
T 3ul1_B           57 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  136 (510)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            35899999999999999999999999754 44444467899999999999999755 68999999999999987 56778


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCC-----hhhHHHHHHHHHH
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGT-----IRGKKDAVTALFN  512 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~-----~~~~~~A~~aL~n  512 (643)
                      ..+++.|+||.|+.+|.+++.++++.|+++|++|+.+ +.++..+.+.|++++|+.+|...+     ......++++|.|
T Consensus       137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  216 (510)
T 3ul1_B          137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  216 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999976 567888889999999999998654     3457889999999


Q ss_pred             hccCCcchHHH-HHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749          513 LSLNQANKARA-IDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIREGTPKNKECATA  590 (643)
Q Consensus       513 Ls~~~~n~~~l-v~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~  590 (643)
                      ++.+......+ ...|+++.|+.++.+.++.++..|+++|.+|+.+. +....+.+.|+++.|+.+|.+.++.++..|+.
T Consensus       217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~  296 (510)
T 3ul1_B          217 LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALR  296 (510)
T ss_dssp             HHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHH
T ss_pred             HhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHH
Confidence            99876655443 34789999999999999999999999999999865 45566778999999999999999999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.++..
T Consensus       297 aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          297 AIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA  345 (510)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999888999999999999999999999999999999999864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.94  E-value=4.8e-25  Score=246.44  Aligned_cols=280  Identities=19%  Similarity=0.237  Sum_probs=251.0

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCCh-----HHHHHHHHHHHHhcCC
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-----KILEHAVTAVLNLSID  434 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~-----~~~~~a~~~L~nLs~~  434 (643)
                      +.+.++.|+.+|.+++.+++..|+++|++++.+++.+|..+.+.|++++|+.+|..++.     .++.+++++|.|++.+
T Consensus       160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~  239 (529)
T 3tpo_A          160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN  239 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence            45889999999999999999999999999999999999999999999999999987643     4678999999999987


Q ss_pred             cchH-HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc-hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          435 ESNK-RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       435 ~~~k-~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      .... ......|++|.|+.+|.+++++++..|+++|.+|+..+.. ...+...|+++.|+.+|.+++..++..|+.+|.|
T Consensus       240 ~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~n  319 (529)
T 3tpo_A          240 KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGN  319 (529)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHH
Confidence            6543 3333578999999999999999999999999999977654 4556678999999999999999999999999999


Q ss_pred             hccCC-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHH
Q 040749          513 LSLNQ-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATA  590 (643)
Q Consensus       513 Ls~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~  590 (643)
                      |+... ..+..+++.|+++.|+.+|.++++.++..|+++|.||+. +++.+..+.+.|+++.|+.++.+++..++..|++
T Consensus       320 l~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~  399 (529)
T 3tpo_A          320 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAW  399 (529)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             HHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHH
Confidence            98754 456678899999999999999999999999999999987 5677888899999999999999999999999999


Q ss_pred             HHHHHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          591 VLLELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       591 ~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +|.+++.+ +++.+..+++.|+++.|+.++.+.++++...+...|.++.+
T Consensus       400 aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          400 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             HHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            99999864 66778889999999999999999999999999999988764

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=2.3e-25  Score=222.90  Aligned_cols=239  Identities=25%  Similarity=0.308  Sum_probs=223.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~  440 (643)
                      +.++.|++.|.++++++|..|++.|.+++..+++++..+.+.|+++.|+++|++++..++..|+++|.+++.+ ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            3689999999999999999999999999988888999999999999999999999999999999999999997 778999


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                      +.+.|+++.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+++++++.++..|+++|.||+...+.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 5677888899999999999999999999999999999999986554


Q ss_pred             -hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          520 -KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       520 -~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                       +..+++.|+++.|+.++.++++.++..|+.+|.+|+. +++.+..+.+.|+++.|++++.++++.+++.|+++|.+|+.
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence             4678899999999999999999999999999999998 67778889999999999999999999999999999999997


Q ss_pred             CCH
Q 040749          598 NNS  600 (643)
Q Consensus       598 ~~~  600 (643)
                      ..+
T Consensus       242 ~~~  244 (252)
T 4hxt_A          242 GGW  244 (252)
T ss_dssp             TCB
T ss_pred             CCC
Confidence            654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=5.1e-25  Score=220.38  Aligned_cols=238  Identities=24%  Similarity=0.279  Sum_probs=222.5

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc-hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKIT  481 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~-~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~  481 (643)
                      |++|.|+.+|.+++++++..|+++|.+++..+. ++..+++.|+++.|+.+|++++.+++..|+++|.+|+.. ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            678999999999999999999999999998654 888899999999999999999999999999999999987 788889


Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhc-cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS-LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE  559 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs-~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~  559 (643)
                      +.+.|+++.|+.+|+++++.++..|+++|.||+ ..++++..+++.|+++.|++++.++++.++..|+++|.+|+. ++.
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~  161 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE  161 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999999 566778889999999999999999999999999999999998 455


Q ss_pred             hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+..+.+.|+++.|+.++.+.++.++..|+++|.+++.+++.....+.+.|+++.|+.++.++++.+++.|.++|.+|..
T Consensus       162 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          162 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence            66888899999999999999999999999999999999888888999999999999999999999999999999999986


Q ss_pred             hc
Q 040749          640 SE  641 (643)
Q Consensus       640 ~~  641 (643)
                      ..
T Consensus       242 ~~  243 (252)
T 4hxt_A          242 GG  243 (252)
T ss_dssp             TC
T ss_pred             CC
Confidence            53

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=1.2e-24  Score=242.99  Aligned_cols=278  Identities=17%  Similarity=0.199  Sum_probs=252.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCCCC-hHHHHHHHHHHHHhcCC-cchH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPYPD-SKILEHAVTAVLNLSID-ESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~d-~~~~~~a~~~L~nLs~~-~~~k  438 (643)
                      ..++.+++.|.+++++.|..|++.|+.++.... .....+++.|++|.|+.+|.+++ +.++..|+++|.+++.+ ++++
T Consensus        74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~  153 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENT  153 (528)
T ss_dssp             -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            458999999999999999999999999975554 67888999999999999999886 99999999999999986 6778


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHh-ccCChhhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      ..++..|+++.|+.+|.+++++++..|+++|.+|+.. +.++..+...|++++|+.+| .+.+..++..|+++|.||+..
T Consensus       154 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~  233 (528)
T 4b8j_A          154 KVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRG  233 (528)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred             HHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence            8888999999999999999999999999999999966 45678888899999999999 567889999999999999988


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh-HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG-RHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~-~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      .++.......|+++.|+.+|.++++.++..|+++|.+|+...+. ...+.+.|+++.|+.+|.+.++.++..|+.+|.+|
T Consensus       234 ~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl  313 (528)
T 4b8j_A          234 KPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNI  313 (528)
T ss_dssp             SSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHH
Confidence            66666666799999999999999999999999999999986554 46778889999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHh
Q 040749          596 GANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISK  639 (643)
Q Consensus       596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~  639 (643)
                      +.+++.....+++.|+++.|+.++.++ ++.++..|.++|.+|..
T Consensus       314 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          314 VTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            998888888889999999999999999 99999999999999974

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=1.5e-25  Score=225.04  Aligned_cols=237  Identities=26%  Similarity=0.351  Sum_probs=218.5

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~  440 (643)
                      ...+.++..|.++++++|..|++.|+++...+++++..+.+.|++|.|+.+|+++++.++..|+++|.|++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            458899999999999999999999977665678889999999999999999999999999999999999998 5778999


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC-c
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ-A  518 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~-~  518 (643)
                      +++.|+++.|+.+|++++++++..|+++|.+|+..+.++ ..+...|+++.|+.+|.+++..++..|+++|.||+... +
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999998888 77888999999999999999999999999999999855 4


Q ss_pred             chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          519 NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       519 n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      ++..+++.|+++.|+.++.++++.++..|+.+|.+|+. +++.+..+.+.|+++.|+.++.++++.+++.|+++|.+|++
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            56668889999999999999999999999999999985 67788889999999999999999999999999999999985


Q ss_pred             C
Q 040749          598 N  598 (643)
Q Consensus       598 ~  598 (643)
                      +
T Consensus       252 ~  252 (252)
T 4db8_A          252 H  252 (252)
T ss_dssp             -
T ss_pred             C
Confidence            3

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.93  E-value=2.3e-24  Score=240.92  Aligned_cols=281  Identities=19%  Similarity=0.168  Sum_probs=255.9

Q ss_pred             hHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749          360 QKEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~  437 (643)
                      ..+.++.|++.|.+. ++.+|..|++.|.+++..+++++..+++.|++|.|+.+|.++++.+++.|+++|.|++.+ +.+
T Consensus       128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~  207 (530)
T 1wa5_B          128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  207 (530)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccc
Confidence            357899999999987 899999999999999988889999999999999999999999999999999999999986 467


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+...|+++.|+.+|.+.+.+++..|+++|.+|+... .........++++.|+.+|.++++.++..|+++|.+|+..
T Consensus       208 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~  287 (530)
T 1wa5_B          208 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  287 (530)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC
Confidence            888889999999999999999999999999999999765 4445555689999999999999999999999999999976


Q ss_pred             Cc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          517 QA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       517 ~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      .+ ....+++.|+++.|+.+|.++++.++..|+.+|.+++. ++.....+.+.|+++.|+.+|.++++.++..|+++|.+
T Consensus       288 ~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~  367 (530)
T 1wa5_B          288 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  367 (530)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            54 46668889999999999999999999999999999997 46667778889999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ++.+++.....+++.|+++.|+.++.++++.++..|.++|.++...
T Consensus       368 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~  413 (530)
T 1wa5_B          368 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG  413 (530)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence            9998888888888999999999999999999999999999998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=1.5e-23  Score=228.20  Aligned_cols=277  Identities=20%  Similarity=0.202  Sum_probs=250.3

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-chHH
Q 040749          362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SNKR  439 (643)
Q Consensus       362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~k~  439 (643)
                      +.++.|++.|.+. ++++|..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.+++.|+++|.+++.+. .++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~  143 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRD  143 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHH
Confidence            6899999999988 8999999999999999888888888999999999999999999999999999999999865 5688


Q ss_pred             HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccc--cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLD--ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      .+.+.|+++.|+.+|.+ .+.+++..|+++|.+|+...  ..+..+. .+++|.|+.++.+++..++..|+++|.+|+..
T Consensus       144 ~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~  222 (450)
T 2jdq_A          144 YVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYLSDG  222 (450)
T ss_dssp             HHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence            88899999999999995 68999999999999999654  3333333 79999999999999999999999999999986


Q ss_pred             C-cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          517 Q-ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       517 ~-~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      . +++..+++.|+++.|+.+|.++++.++..|+.+|.+++.. +..+..+.+.|+++.|+.++.+.++.++..|+++|.+
T Consensus       223 ~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~  302 (450)
T 2jdq_A          223 PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISN  302 (450)
T ss_dssp             SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            4 4566678899999999999999999999999999999985 4456667888999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++.+++.....+.+.|+++.|+.++.++++++|..|.++|.++..
T Consensus       303 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          303 ITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS  347 (450)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence            999888888888889999999999999999999999999999865

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=1.2e-23  Score=235.14  Aligned_cols=278  Identities=17%  Similarity=0.204  Sum_probs=252.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc-CchhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCC-cchH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKE-NPENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSID-ESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~-~~~k  438 (643)
                      ..++.+++.|.+++++.|..|+..|+.+... +..++..+++.|++|.|+.+|.++ ++.++..|+++|.+++.. ++.+
T Consensus        87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~  166 (530)
T 1wa5_B           87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT  166 (530)
T ss_dssp             CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence            4589999999999999999999999998643 345677888999999999999997 899999999999999985 4567


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ..++..|+++.|+.+|.++++++++.|+++|.+|+.. +.++..+...|+++.|+.++.+.+..++..|+++|.||+.+.
T Consensus       167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~  246 (530)
T 1wa5_B          167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGK  246 (530)
T ss_dssp             HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCC
Confidence            7788999999999999999999999999999999976 467888888999999999999989999999999999999876


Q ss_pred             -cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          518 -ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       518 -~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                       +........|+++.|+.+|.++++.++..|+++|.+|+.. ++....+.+.|+++.|+.++.+.++.++..|+.+|.++
T Consensus       247 ~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l  326 (530)
T 1wa5_B          247 KPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI  326 (530)
T ss_dssp             SSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHH
Confidence             5556667799999999999999999999999999999975 56678888899999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +.+++.....+.+.|+++.|+.++.++++.++..|.++|.++..
T Consensus       327 ~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITA  370 (530)
T ss_dssp             TTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            99888888888899999999999999999999999999999874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.92  E-value=1.5e-24  Score=217.89  Aligned_cols=236  Identities=21%  Similarity=0.245  Sum_probs=219.3

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKIT  481 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~  481 (643)
                      ...+.++..|.++|++++..|+++|.++.. +++++..+++.|+++.|+.+|++++++++..|+++|.+++. +++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            468899999999999999999999977544 66778889999999999999999999999999999999997 5788889


Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chh
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPE  559 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~  559 (643)
                      +.+.|+++.|+.+|+++++.++..|+++|.||+..++++ ..+++.|+++.|+++|.++++.++..|+++|.+|+. +++
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            999999999999999999999999999999999999988 789999999999999999999999999999999998 556


Q ss_pred             hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+..+.+.|+++.|+.++.++++.++..|+++|.+++.+++.....+.+.|+++.|+.++.++++++++.|.++|.+|..
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence            77788889999999999999999999999999999999898888899999999999999999999999999999998865

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1.8e-23  Score=227.63  Aligned_cols=279  Identities=18%  Similarity=0.165  Sum_probs=250.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCc--ch
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDE--SN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~--~~  437 (643)
                      .+.++.|++.|.+++++++..|++.|.+++..++.++..+.+.|+++.|+.+|.+ .+..++..|+++|.+++.+.  ..
T Consensus       106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~  185 (450)
T 2jdq_A          106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP  185 (450)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence            4689999999999999999999999999998888999999999999999999995 68999999999999999754  33


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+ ..++++.|+.++.+++++++..++++|.+|+... +.+..+...|+++.|+.+|.++++.++..|+++|.||+..
T Consensus       186 ~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  264 (450)
T 2jdq_A          186 EFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTG  264 (450)
T ss_dssp             CGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhC
Confidence            3333 3789999999999999999999999999999754 5566677789999999999999999999999999999987


Q ss_pred             Ccch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          517 QANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       517 ~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      .+.. ..+++.|+++.|+.+|.++++.++..|+++|.+++. +++....+.+.|+++.|+.++.++++.++..|+++|.+
T Consensus       265 ~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~  344 (450)
T 2jdq_A          265 DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITN  344 (450)
T ss_dssp             CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            6654 447789999999999999899999999999999996 67777888888999999999999999999999999999


Q ss_pred             HhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          595 LGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       595 L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ++.+ +++....+.+.|+++.|+.++.+++++++..|...|.++...
T Consensus       345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            9976 677777788899999999999999999999999999988653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.91  E-value=4.2e-23  Score=229.67  Aligned_cols=276  Identities=22%  Similarity=0.274  Sum_probs=247.6

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749          361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k  438 (643)
                      .+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+ +..+
T Consensus        58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~-~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~  136 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHc-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence            47899999999754 89999999999999995 467999999999999999999999999999999999999986 4567


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~  516 (643)
                      ..+.+.|+++.|+.+|.+++++++..++.+|.+++.. ++++..+.+.|+++.|+.+|++++. ..+..++.+|.||+.+
T Consensus       137 ~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~  216 (529)
T 1jdh_A          137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC
Confidence            8888999999999999999999999999999999974 6788889999999999999987754 5566788999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      ++++..+++.|+++.|+.++.++++.++..++++|.+|+.......  ...++++.|++++.+.++.+++.|+++|.+|+
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~  294 (529)
T 1jdh_A          217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  294 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999899999999999999998653322  23478999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHHHHHHHHHh
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTEGG--TSRAQRKANALLQLISK  639 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~~  639 (643)
                      .++++.+..+.+.|+++.|+.++.+.  ++.++..|..+|.+|..
T Consensus       295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            98888899999999999999999763  37999999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=1e-23  Score=208.06  Aligned_cols=195  Identities=18%  Similarity=0.215  Sum_probs=175.9

Q ss_pred             HHHHHHHHHhcCCCH--HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchH
Q 040749          362 EEIVSLVEQLSSSKL--EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~--~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k  438 (643)
                      ..++.++++|.++++  +.|..|+..|++++..++++|..+.+.|+||+|+.+|+++++++|+.|+++|.||+. +++||
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            568999999999888  889999999999999999999999999999999999999999999999999999998 57899


Q ss_pred             HHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc---c-------------CChh
Q 040749          439 RLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ---N-------------GTIR  501 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~---~-------------~~~~  501 (643)
                      ..|++.|+||+|+++|. +++.+++++|+.+||+||..+.+|..|++ +++|+|+.++.   +             .+..
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999998 57899999999999999999999999987 46999998763   1             2458


Q ss_pred             hHHHHHHHHHHhccC-CcchHHHHHc-CChHHHHHHhcc------CChhhHHHHHHHHHHHhCC
Q 040749          502 GKKDAVTALFNLSLN-QANKARAIDA-GIVLPLMNLLEE------RNLGMVDEALSILLLLATH  557 (643)
Q Consensus       502 ~~~~A~~aL~nLs~~-~~n~~~lv~~-G~v~~Lv~lL~~------~~~~~~~~Al~~L~~La~~  557 (643)
                      ++.+|+.+|+||+.. +++|..|.+. |+|+.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            999999999999985 4888889885 778999999976      2567899999999999864

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=1.3e-22  Score=232.05  Aligned_cols=276  Identities=22%  Similarity=0.269  Sum_probs=248.2

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749          361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k  438 (643)
                      .+.++.|++.|.++ +++++..|+..|++++.. ++++..+.+.|++|.|+.+|+++++.++..|+++|.|++.+ +..+
T Consensus        55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~  133 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  133 (644)
T ss_dssp             HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence            47899999999865 899999999999999964 66999999999999999999999999999999999999986 4567


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhhhhccCChHHHHHHhccCC-hhhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGT-IRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~~aL~nLs~~  516 (643)
                      ..+++.|+++.|+.+|++++++.+..++.+|.+|+. +++++..+.+.|+++.|+.+|++++ ...+..++.+|+||+.+
T Consensus       134 ~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~  213 (644)
T 2z6h_A          134 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  213 (644)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC
Confidence            778899999999999999999888888999999996 6788999999999999999998765 56778899999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      ++++..+++.|+++.|+.++.+.+..++..++++|.+|+......  ....++++.|++++.+.++.+++.|+++|.+|+
T Consensus       214 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~  291 (644)
T 2z6h_A          214 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  291 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999989999999999999998754322  222478999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhhcC-C-HHHHHHHHHHHHHHHh
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTEGG-T-SRAQRKANALLQLISK  639 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~~g-~-~~~k~~A~~lL~~L~~  639 (643)
                      .+++..+..+.+.|+++.|+.++.+. + +.++..|..+|.+|..
T Consensus       292 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          292 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            99888889999999999999999873 3 7999999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=3.3e-23  Score=230.59  Aligned_cols=277  Identities=18%  Similarity=0.185  Sum_probs=245.5

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      ..+.++.|+.+|+++++.+|..|+..|.+++. ++.++..+.. .|+++.|+++|.++ ++.++..|+.+|.+|+.++++
T Consensus        15 ~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~-~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~   93 (529)
T 1jdh_A           15 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK-KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   93 (529)
T ss_dssp             --CHHHHHHHHHTCSCHHHHHHHHHHHHHHHT-SHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHc-CCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchh
Confidence            35789999999999999999999999999995 4567766665 58999999999754 899999999999999999889


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+.+.|+++.|+.+|++++++++..|+++|.+|+..+ ..+..+.+.|++|.|+.++++++...+..++.+|.||+..
T Consensus        94 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~  173 (529)
T 1jdh_A           94 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  173 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999874 5677777899999999999999999999999999999974


Q ss_pred             -CcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          517 -QANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       517 -~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                       ++++..+++.|+++.|+.++.+. .......++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus       174 ~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~  253 (529)
T 1jdh_A          174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  253 (529)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHH
Confidence             67788899999999999999874 4556778899999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      |+...+...   ...|+++.|+.++.++++.++..|.++|.+|...
T Consensus       254 l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~  296 (529)
T 1jdh_A          254 LSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             HHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTT
T ss_pred             HhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            998654321   1237899999999999999999999999999764

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.89  E-value=9e-23  Score=233.46  Aligned_cols=277  Identities=18%  Similarity=0.195  Sum_probs=247.3

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcch
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      ..+.++.|+.+|++.++.+|..|+..|.+++.++ .++..+.. .|+++.|+++|.++ +++++..|+.+|.+|+.++++
T Consensus        12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~   90 (644)
T 2z6h_A           12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREG   90 (644)
T ss_dssp             CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhh
Confidence            3467999999999999999999999999999655 57777765 48999999999865 899999999999999999889


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-  515 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-  515 (643)
                      +..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ ..+..+.+.|+++.|+.+|++++.+.+..++.+|.+|+. 
T Consensus        91 ~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~  170 (644)
T 2z6h_A           91 LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG  170 (644)
T ss_dssp             HHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999774 566677789999999999999998888888999999996 


Q ss_pred             CCcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          516 NQANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       516 ~~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      +++++..+++.|+++.|+.+|.+. ....+..++.+|.+|+.+++++..+.+.|+++.|+.++.++++..+..|+++|.+
T Consensus       171 ~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~n  250 (644)
T 2z6h_A          171 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRN  250 (644)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            678888899999999999999874 4567889999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ||...+..   ....++++.|+.++.++++.++..|.++|.+|...
T Consensus       251 L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          251 LSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             HGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             Hhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            99765431   11237899999999999999999999999998763

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.4e-22  Score=225.97  Aligned_cols=280  Identities=17%  Similarity=0.169  Sum_probs=240.3

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCch--------------------------------------hHHHH
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPE--------------------------------------NRILI  400 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~--------------------------------------~r~~i  400 (643)
                      +.+.++.|+..+++ .+......++..|.+++...+.                                      ++..+
T Consensus       374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l  453 (778)
T 3opb_A          374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI  453 (778)
T ss_dssp             CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence            56779999999995 6778889999999999863321                                      56778


Q ss_pred             HhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHH---HHHHHHHHHHhcccccc
Q 040749          401 ADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTE---ARENSAAALFSLSMLDE  477 (643)
Q Consensus       401 ~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e---~~~~Aa~~L~~Ls~~~~  477 (643)
                      .+.|+||.|+.+++++++.+++.|+++|.||+.++++|..+++.|++++|+.+|.+++..   ++.+|+.+|.+|+.+.+
T Consensus       454 ~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~n  533 (778)
T 3opb_A          454 LRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTN  533 (778)
T ss_dssp             TTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSC
T ss_pred             HHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCC
Confidence            899999999999999999999999999999999999999999999999999999988654   89999999999997766


Q ss_pred             chhhhhc---cCChHHHHHHhccC--Ch------------hhHHHHHHHHHHhccCCcc-----hHHHHHc-CChHHHHH
Q 040749          478 NKITIGL---SDGIPPLVDLLQNG--TI------------RGKKDAVTALFNLSLNQAN-----KARAIDA-GIVLPLMN  534 (643)
Q Consensus       478 ~k~~i~~---~g~i~~Lv~lL~~~--~~------------~~~~~A~~aL~nLs~~~~n-----~~~lv~~-G~v~~Lv~  534 (643)
                      ....+..   .|+|++|+.+|..+  ..            ..+..|+.||.||+..++|     +.++++. |+++.|..
T Consensus       534 p~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~  613 (778)
T 3opb_A          534 PGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIEN  613 (778)
T ss_dssp             HHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHH
T ss_pred             HHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHH
Confidence            5555532   49999999999832  11            1278999999999998743     7778995 99999999


Q ss_pred             HhccCChhhHHHHHHHHHHHhCChhhH-HHhhcCC------cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 040749          535 LLEERNLGMVDEALSILLLLATHPEGR-HKIGQLS------FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL  607 (643)
Q Consensus       535 lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g------~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~  607 (643)
                      ++.+++..++.+|+.+++||+.+++++ +.+...+      .++.|+.+++.++...|..|+++|.++++.++..+..++
T Consensus       614 LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll  693 (778)
T 3opb_A          614 LMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELL  693 (778)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHT
T ss_pred             HHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            999988999999999999999999885 4554322      378999999999999999999999999888888888888


Q ss_pred             HC-CcHHHHHHHhhc--CCHHHHHHHHHHHHHHHh
Q 040749          608 QY-GVYEHLIQLTEG--GTSRAQRKANALLQLISK  639 (643)
Q Consensus       608 ~~-g~i~~L~~ll~~--g~~~~k~~A~~lL~~L~~  639 (643)
                      +. ++++.|+.++.+  .++.++..+..++.+|..
T Consensus       694 ~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          694 TKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             TCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            76 899999999999  899999999999999975

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.88  E-value=1.7e-22  Score=199.30  Aligned_cols=193  Identities=20%  Similarity=0.320  Sum_probs=173.7

Q ss_pred             CcHHHHHhCCCCCh--HHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchh
Q 040749          405 AIPPLVQLLPYPDS--KILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKI  480 (643)
Q Consensus       405 ~i~~Lv~lL~~~d~--~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~  480 (643)
                      .+|.|+++|.++++  .+|..|+++|.+|+. +++++..|.+.|+||+|+++|+++++++++.|+++|.+|+. ++++|.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            68999999999988  899999999999996 67889999999999999999999999999999999999997 578999


Q ss_pred             hhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc----------------CChhh
Q 040749          481 TIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE----------------RNLGM  543 (643)
Q Consensus       481 ~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~----------------~~~~~  543 (643)
                      .|++.|+||+|+.+|+ +++..+++.|+.+|+||+..++++..+++. ++++|+.++..                .+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 478999999999999999999999998875 69999987631                25588


Q ss_pred             HHHHHHHHHHHhC-ChhhHHHhhcC-CcHHHHHHHHhcC------ChHHHHHHHHHHHHHhcC
Q 040749          544 VDEALSILLLLAT-HPEGRHKIGQL-SFIETLVEYIREG------TPKNKECATAVLLELGAN  598 (643)
Q Consensus       544 ~~~Al~~L~~La~-~~~~~~~i~~~-g~i~~Lv~lL~~~------s~~~~e~A~~~L~~L~~~  598 (643)
                      +.+|.++|.||+. ++++|+.+.+. |+|+.|+.+++.+      +...+|+|+.+|.+||.+
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999987 67999999885 6789999999852      567899999999999864

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=2e-21  Score=226.57  Aligned_cols=276  Identities=23%  Similarity=0.287  Sum_probs=245.9

Q ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchH
Q 040749          361 KEEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k  438 (643)
                      .+.++.|++.|.++ +++.+..|+..|++++. +++++..+.+.|+||.|+.+|+++++.++..|+++|.||+.+ +..+
T Consensus       191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~-~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~  269 (780)
T 2z6g_A          191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAK  269 (780)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHH
T ss_pred             cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence            47899999999854 89999999999999985 477899999999999999999999999999999999999986 4567


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhhhhccCChHHHHHHhccCCh-hhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~aL~nLs~~  516 (643)
                      ..+.+.|+++.|+.+|.+++.+++..++.+|.+|+. +++++..+.+.|+++.|+.+|++++. ..+..++.+|.+|+.+
T Consensus       270 ~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  349 (780)
T 2z6g_A          270 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  349 (780)
T ss_dssp             HHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC
Confidence            777789999999999999999999999999999986 46788888999999999999998764 4556789999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      +.++..+++.|+++.|+.++.+.+..++..|+++|.+|+.....  .....++++.|+.++.+.++.+++.|+++|.+|+
T Consensus       350 ~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~  427 (780)
T 2z6g_A          350 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  427 (780)
T ss_dssp             TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999998899999999999999975432  1223578999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhhc-CC-HHHHHHHHHHHHHHHh
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTEG-GT-SRAQRKANALLQLISK  639 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~~-g~-~~~k~~A~~lL~~L~~  639 (643)
                      .+++..+..+.+.|+++.|+.++.+ ++ +.++..|..+|.+|..
T Consensus       428 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          428 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             SSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            9988888889999999999999986 43 4899999999999874

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.88  E-value=1.3e-21  Score=190.69  Aligned_cols=197  Identities=27%  Similarity=0.364  Sum_probs=181.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~  439 (643)
                      .+..+.|+.+|.+.+++++..|++.|.+++..+++++..+.+.|++|.|+.+|+++++.++..|+++|.|++. +++++.
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            4668899999999999999999999999998899999999999999999999999999999999999999996 567788


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-C
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-Q  517 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~  517 (643)
                      .+++.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|+.+|++++..++..|+++|.||+.. +
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            8999999999999999999999999999999999654 5556777899999999999999999999999999999987 6


Q ss_pred             cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      +++..+++.|+++.|++++.++++.+++.|+.+|.+|+++
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            6677788999999999999999999999999999999863

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.87  E-value=1.4e-21  Score=227.95  Aligned_cols=276  Identities=18%  Similarity=0.198  Sum_probs=244.9

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      .+.++.|+.+|.+.++.+|..|+..|.+++.. ..++..+.. .|+++.|+.+|.++ ++.++..|+.+|.+|+.+++++
T Consensus       149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~  227 (780)
T 2z6g_A          149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGL  227 (780)
T ss_dssp             HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHH
T ss_pred             hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            57899999999999999999999999999964 567777775 48999999999755 8999999999999999998899


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-C
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-N  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~  516 (643)
                      ..+.+.|+|+.|+.+|+++++.++..|+++|.+|+... ..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+. +
T Consensus       228 ~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~  307 (780)
T 2z6g_A          228 LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  307 (780)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999774 556667779999999999999899999999999999996 5


Q ss_pred             CcchHHHHHcCChHHHHHHhccCC-hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          517 QANKARAIDAGIVLPLMNLLEERN-LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~-~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      ++++..+++.|+++.|+.++.+.+ ....+.++.+|.+|+.+++.+..+++.|+++.|+.++.++++..+..|+++|.+|
T Consensus       308 ~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          308 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  387 (780)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            678888999999999999998744 4556788999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +...+..   ....++++.|+.++.+.++.+++.|.++|.+|...
T Consensus       388 ~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~  429 (780)
T 2z6g_A          388 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN  429 (780)
T ss_dssp             HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred             hccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            9765431   11246899999999999999999999999998753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.87  E-value=6.4e-21  Score=185.84  Aligned_cols=198  Identities=21%  Similarity=0.234  Sum_probs=181.4

Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhcc-ccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcch
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLS-MLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANK  520 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls-~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~  520 (643)
                      ..|+.+.|+.+|++++++++..|+++|.+|+ ..++++..+.+.|+++.|+.+|+++++.++..|+++|.||+. +++++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence            5688999999999999999999999999999 456778888899999999999999999999999999999996 55677


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                      ..+++.|+++.|+.+|.++++.++..|+++|.||+. +++.+..+.+.|+++.|++++.++++.++..|+++|.+++..+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~  169 (210)
T 4db6_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (210)
T ss_dssp             HHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999996 5667788889999999999999999999999999999999988


Q ss_pred             HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +.....+.+.|+++.|+.++.++++.+++.|..+|.+|.++
T Consensus       170 ~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          170 NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC-
T ss_pred             cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhcC
Confidence            88888999999999999999999999999999999998753

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.83  E-value=9.2e-21  Score=177.18  Aligned_cols=76  Identities=29%  Similarity=0.502  Sum_probs=71.8

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ..+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.+++..+++||..|+++|+.|+..||+.
T Consensus       101 ~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~~~  176 (179)
T 2f42_A          101 REIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENGWV  176 (179)
T ss_dssp             CCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCTTC
T ss_pred             cCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCCCc
Confidence            4689999999999999999999999999999999999975558999999999999999999999999999999876

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.81  E-value=4.2e-19  Score=199.82  Aligned_cols=323  Identities=14%  Similarity=0.109  Sum_probs=249.2

Q ss_pred             cCCCCccchHHHHH----HHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHH
Q 040749          290 IASGQTFERESVQK----WFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIV  365 (643)
Q Consensus       290 ~~cg~ty~r~~I~~----~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~  365 (643)
                      .+|.+.-||..|.+    |+...-          .. .-+.++++-.++.-|.....    ..       .  .-...++
T Consensus       282 aACi~~~cR~~I~~~~~~~L~~~l----------~~-~~ir~lAavvL~KL~~~~~~----~~-------~--si~~La~  337 (778)
T 3opb_A          282 SACIDETMRTYITENYLQLLERSL----------NV-EDVQIYSALVLVKTWSFTKL----TC-------I--NLKQLSE  337 (778)
T ss_dssp             HHCCSHHHHHHHHHHHHHHHHHHT----------TS-GGGHHHHHHHHHHHTGGGTC----TT-------C--CHHHHHH
T ss_pred             HHhCCcHHHHHHHHhHHHHHHHHh----------cc-HHHHHHHHHHHHHHhcCCCC----Cc-------C--cHHHHHH
Confidence            36888888887766    443221          11 12334455555555553321    00       0  1134678


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcc-------
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDES-------  436 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~-------  436 (643)
                      .+.+.|.+++.+.+..|++.|..++ -+++.|..+++ .|+++.|+.+++. ++..+...++.+|.|++.+.+       
T Consensus       338 ~~~~~L~~~~~~~~~~AvEgLaYLS-l~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~  416 (778)
T 3opb_A          338 IFINAISRRIVPKVEMSVEALAYLS-LKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX  416 (778)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHT-TSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHh-CCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence            8889999888788999999999999 46788888877 5679999999995 788899999999999976322       


Q ss_pred             --------------------------------hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc
Q 040749          437 --------------------------------NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL  484 (643)
Q Consensus       437 --------------------------------~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~  484 (643)
                                                      ++..+.+.|+++.|+.+++++++.+++.|+++|.+||.++++|..+++
T Consensus       417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq  496 (778)
T 3opb_A          417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ  496 (778)
T ss_dssp             ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred             hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                            344556899999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHhccCChh---hHHHHHHHHHHhccCCcchHHHH--H-cCChHHHHHHhcc-CChh------------h-H
Q 040749          485 SDGIPPLVDLLQNGTIR---GKKDAVTALFNLSLNQANKARAI--D-AGIVLPLMNLLEE-RNLG------------M-V  544 (643)
Q Consensus       485 ~g~i~~Lv~lL~~~~~~---~~~~A~~aL~nLs~~~~n~~~lv--~-~G~v~~Lv~lL~~-~~~~------------~-~  544 (643)
                      .|++++|+.++.+++..   ++..|+.||.+|+...+....+-  . .|+|++|+.+|.. +...            + .
T Consensus       497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~  576 (778)
T 3opb_A          497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN  576 (778)
T ss_dssp             TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred             CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence            99999999999988654   89999999999986555443221  1 3899999999973 2111            2 6


Q ss_pred             HHHHHHHHHHhCCh-----hhHHHhhcC-CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHHC------Cc
Q 040749          545 DEALSILLLLATHP-----EGRHKIGQL-SFIETLVEYIREGTPKNKECATAVLLELGANNSSFI-LAALQY------GV  611 (643)
Q Consensus       545 ~~Al~~L~~La~~~-----~~~~~i~~~-g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~-~~~~~~------g~  611 (643)
                      -+|+.+|.|||+.+     +.|..++.. |+++.|..+|.+.++.++..|++++++|+.+. +.. +.+.+.      +.
T Consensus       577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~-e~i~~k~~~~~~~~~~~r  655 (778)
T 3opb_A          577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP-LTIAAKFFNLENPQSLRN  655 (778)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG-GGTGGGTSCCSSHHHHHH
T ss_pred             HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc-HHHHHHHHhhcCchhhcc
Confidence            68999999999976     457888885 99999999999999999999999999999743 332 233221      23


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          612 YEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       612 i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ++.|+.++..++.++|+.|.++|.++.
T Consensus       656 L~lLV~Ll~s~D~~~r~AAagALAnLt  682 (778)
T 3opb_A          656 FNILVKLLQLSDVESQRAVAAIFANIA  682 (778)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence            889999999999999999999999984

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.80  E-value=2.2e-18  Score=176.95  Aligned_cols=236  Identities=18%  Similarity=0.187  Sum_probs=188.7

Q ss_pred             HHHHHHHHHHhcCC------------CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHH-hCCCCChHHHHHHHHH
Q 040749          361 KEEIVSLVEQLSSS------------KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ-LLPYPDSKILEHAVTA  427 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~------------~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~d~~~~~~a~~~  427 (643)
                      ...++..++.|.++            +.+.+..|+..|..++ ++.++...+...|++|.|+. +|.++++.+++.|+++
T Consensus        27 ~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv-~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~  105 (296)
T 1xqr_A           27 VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQL  105 (296)
T ss_dssp             HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHH-hChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            34455666666553            2356788999999999 56778999999999999999 9999999999999999


Q ss_pred             HHHhcCC-cchHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCChhhHH
Q 040749          428 VLNLSID-ESNKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKK  504 (643)
Q Consensus       428 L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~~~~~  504 (643)
                      |+|++.+ +..+..+++.|++++|+.+|+++ +..++..|+++|.+|+... .....+...|+++.|+.+|++++..++.
T Consensus       106 Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~  185 (296)
T 1xqr_A          106 IGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKV  185 (296)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHH
Confidence            9999985 45688888999999999999964 7899999999999998654 4566777889999999999999999999


Q ss_pred             HHHHHHHHhccC-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC-hhhHHHhhcC-CcHHHH----HHHH
Q 040749          505 DAVTALFNLSLN-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH-PEGRHKIGQL-SFIETL----VEYI  577 (643)
Q Consensus       505 ~A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~-~~~~~~i~~~-g~i~~L----v~lL  577 (643)
                      .|+++|.||+.. ++.+..+++.|+++.|+.+|.+++..+++.|+.+|.+|+.. +.....+... ..+..+    .+-+
T Consensus       186 ~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~l  265 (296)
T 1xqr_A          186 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL  265 (296)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHc
Confidence            999999999874 56678899999999999999999999999999999999886 3333333221 112222    2333


Q ss_pred             hcC--ChHHHHHHHHHHHHHhc
Q 040749          578 REG--TPKNKECATAVLLELGA  597 (643)
Q Consensus       578 ~~~--s~~~~e~A~~~L~~L~~  597 (643)
                      +..  .....+.|..++..+..
T Consensus       266 q~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          266 QQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             TTCGGGHHHHHHHHHHHHHHCC
T ss_pred             cchHHHHHHHHHHHHHHHHHcC
Confidence            322  24566777777766653

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.80  E-value=4.2e-20  Score=152.91  Aligned_cols=75  Identities=28%  Similarity=0.409  Sum_probs=69.9

Q ss_pred             CCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF  343 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  343 (643)
                      ...+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||.|+++++...++||..|+++|+.|+.+++.
T Consensus         8 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~~   82 (85)
T 2kr4_A            8 YSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQS   82 (85)
T ss_dssp             CTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHH
T ss_pred             hhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhhh
Confidence            3568999999999999999999999999999999999996 56899999999999999999999999999988753

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.79  E-value=5.8e-20  Score=156.59  Aligned_cols=75  Identities=29%  Similarity=0.414  Sum_probs=70.2

Q ss_pred             CCCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcc
Q 040749          267 LSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNN  342 (643)
Q Consensus       267 ~~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~  342 (643)
                      ....+|++|.||||+++|+|||+++|||+|||.||++||.. +.+||.|+++++..+++||..|+++|+.|+.+|+
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~   96 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQ   96 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhh
Confidence            34578999999999999999999999999999999999985 6799999999999999999999999999999876

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.79  E-value=2.1e-18  Score=177.13  Aligned_cols=221  Identities=17%  Similarity=0.130  Sum_probs=186.6

Q ss_pred             hHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHh
Q 040749          418 SKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLL  495 (643)
Q Consensus       418 ~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL  495 (643)
                      .+.+..|+..|.+++.+.++...+...|++++|+. +|.+++++++..|+++|.+++.+ +.++..+.+.|++|+|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            45678899999999998889998999999999999 99999999999999999999865 56788888999999999999


Q ss_pred             ccC-ChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHH
Q 040749          496 QNG-TIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIET  572 (643)
Q Consensus       496 ~~~-~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~  572 (643)
                      +++ +..+++.|++||.||+.+.. ....++++|+++.|+.+|.+++..++..|+++|.+|+. +++.+..+++.|+++.
T Consensus       134 ~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          134 DRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHH
Confidence            864 78999999999999997554 45678889999999999999999999999999999987 5788999999999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHC--CcHHHH---HHHhh-cC-CHHHHHHHHHHHHHHH
Q 040749          573 LVEYIREGTPKNKECATAVLLELGANNSSFILAALQY--GVYEHL---IQLTE-GG-TSRAQRKANALLQLIS  638 (643)
Q Consensus       573 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~--g~i~~L---~~ll~-~g-~~~~k~~A~~lL~~L~  638 (643)
                      |+.+|.+.++.+++.|+.+|.+|+...+.........  .....|   .+-++ +. +....++|..++..+.
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999998866554443321  222222   22333 22 4678889999988664

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.79  E-value=9.6e-20  Score=154.63  Aligned_cols=76  Identities=32%  Similarity=0.451  Sum_probs=71.4

Q ss_pred             CCCCCCccccccCcccccCceecCCC-CccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVIIASG-QTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~~cg-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ...+|++|.||||+++|+|||+++|| |+|||.||++||.. +.+||.|++++...+++||..|+.+|+.|+..+++.
T Consensus        16 ~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~~   92 (98)
T 1wgm_A           16 YADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQ   92 (98)
T ss_dssp             CCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTTC
T ss_pred             hhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcchh
Confidence            45689999999999999999999999 99999999999986 568999999999999999999999999999998866

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.74  E-value=1.3e-18  Score=141.89  Aligned_cols=76  Identities=54%  Similarity=1.112  Sum_probs=71.5

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ..++++|.||||+++|.|||+++|||+||+.||.+|+..++.+||.|+.++....+.||..++++|+.|..+++++
T Consensus         3 ~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~~~   78 (78)
T 1t1h_A            3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             cCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcCCC
Confidence            3678999999999999999999999999999999999987789999999999999999999999999999998863

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.73  E-value=1.7e-17  Score=169.77  Aligned_cols=77  Identities=29%  Similarity=0.497  Sum_probs=72.6

Q ss_pred             CCCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          268 SLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       268 ~~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ...+|++|.||||+++|.|||+++|||||||.||.+|+..++.+||.|+.+++...++||..|+.+|+.|+.++++.
T Consensus       202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~~~  278 (281)
T 2c2l_A          202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV  278 (281)
T ss_dssp             CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCCCC
Confidence            35789999999999999999999999999999999999987767999999999999999999999999999999876

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.4e-17  Score=138.26  Aligned_cols=72  Identities=28%  Similarity=0.504  Sum_probs=64.6

Q ss_pred             CCCccccccCcccccCceecC-CCCccchHHHHHHHhcC-----CCCCCC--cCcc-cccCCCCccHHHHHHHHHHHHhc
Q 040749          271 IPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSN-----HRTCPK--TRQT-LAHLSIAPNYALKNLILQWCEKN  341 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~-----~~~cP~--~~~~-l~~~~l~pn~~l~~~i~~~~~~~  341 (643)
                      .+++|.||||+++|.|||+++ |||+||+.||.+||..+     ..+||.  |+.. +...+++||..|+.+|+.|...+
T Consensus         4 ~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~~   83 (94)
T 2yu4_A            4 GSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKKR   83 (94)
T ss_dssp             CSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTTC
T ss_pred             CCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHHh
Confidence            478899999999999999996 99999999999999863     468999  5554 88899999999999999999876


Q ss_pred             c
Q 040749          342 N  342 (643)
Q Consensus       342 ~  342 (643)
                      +
T Consensus        84 ~   84 (94)
T 2yu4_A           84 H   84 (94)
T ss_dssp             C
T ss_pred             c
Confidence            6

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.57  E-value=2.8e-15  Score=170.39  Aligned_cols=102  Identities=25%  Similarity=0.395  Sum_probs=81.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhhhcccCCCCCCchhhcccCCCCCCCCccccccCcccccCceecCCC-CccchHHHHHHHhc
Q 040749          229 SESIQQMIDLLNKFKQVAGMEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASG-QTFERESVQKWFDS  307 (643)
Q Consensus       229 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~CpIc~~~m~dPv~~~cg-~ty~r~~I~~~~~~  307 (643)
                      .+.++++..+..++++.....+.+            +....++|++|.|||++++|+|||++|+| +||+|.+|++|+..
T Consensus       858 ~~~i~~~~~l~~~~~~~~~~~~~~------------e~~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~  925 (968)
T 3m62_A          858 PEFIEKLLNFANKAEEQRKADEEE------------DLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS  925 (968)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------------HHHHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh------------hccccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc
Confidence            445566666666665443222111            11234789999999999999999999998 79999999999987


Q ss_pred             CCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccc
Q 040749          308 NHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF  343 (643)
Q Consensus       308 ~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  343 (643)
                       +.+||.|++++++.+++||++||..|++||.+++.
T Consensus       926 -~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          926 -DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             -CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             -CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence             56999999999999999999999999999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.56  E-value=5.9e-15  Score=124.21  Aligned_cols=76  Identities=25%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CCCCCccccccCcccccCceecC-CCCccchHHHHHHHhc-CCCCCCCcCccc-ccCCCCccHHHHHHHHHHHHhcccc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDS-NHRTCPKTRQTL-AHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~-~~~~cP~~~~~l-~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ..++++|.||||+++|.+||+++ |||+||+.||.+|+.. +..+||.|+.++ ....+.+|..++.+++.|...++..
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~~~   86 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETGYT   86 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHTCC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHhHH
Confidence            46789999999999999999999 9999999999999975 447899999997 5668999999999999999877654

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.54  E-value=3.2e-13  Score=148.50  Aligned_cols=276  Identities=19%  Similarity=0.251  Sum_probs=221.3

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~  436 (643)
                      ..++|+.|+..|.+ .-.+.|+.|+..|+.+++..+   ..+ ..++++.|+..|+.+  |.++...++.+|.++...++
T Consensus        19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~---~~V-g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~   94 (651)
T 3grl_A           19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR---LEV-GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDE   94 (651)
T ss_dssp             HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT---THH-HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC-
T ss_pred             hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH---HHh-hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence            45789999999985 568899999999999996543   333 366899999999865  88899999999998755221


Q ss_pred             h------------------HHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--chhhhhc-cCChHHHHHH
Q 040749          437 N------------------KRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--NKITIGL-SDGIPPLVDL  494 (643)
Q Consensus       437 ~------------------k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~-~g~i~~Lv~l  494 (643)
                      .                  .+.+. +.+.|+.|+.+|++.+..+|.++..+|..|+....  ++..|.. +++|+.|+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l  174 (651)
T 3grl_A           95 EEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL  174 (651)
T ss_dssp             -------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred             cccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence            1                  11232 57889999999999999999999999999986643  6777775 7999999999


Q ss_pred             hccCChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccC----ChhhHHHHHHHHHHHhC-ChhhHHHhhcCC
Q 040749          495 LQNGTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEER----NLGMVDEALSILLLLAT-HPEGRHKIGQLS  568 (643)
Q Consensus       495 L~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~----~~~~~~~Al~~L~~La~-~~~~~~~i~~~g  568 (643)
                      |.+....++-.|+..|.+|+.+..+..+++. .|+++.|+.++...    ...++..|+.+|.||.. ++.++..|.+.|
T Consensus       175 L~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~  254 (651)
T 3grl_A          175 LADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGS  254 (651)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcC
Confidence            9999999999999999999999998888877 69999999999873    33678999999999988 567899999999


Q ss_pred             cHHHHHHHHhcCCh------HHHH---HHHHHHHHHhcCC------HHHHHHHHHCCcHHHHHHHhhcC--CHHHHHHHH
Q 040749          569 FIETLVEYIREGTP------KNKE---CATAVLLELGANN------SSFILAALQYGVYEHLIQLTEGG--TSRAQRKAN  631 (643)
Q Consensus       569 ~i~~Lv~lL~~~s~------~~~e---~A~~~L~~L~~~~------~~~~~~~~~~g~i~~L~~ll~~g--~~~~k~~A~  631 (643)
                      +++.|..++..+..      ....   .++.++..|+..+      +.+...+.+.|+++.|++++...  ...++..|.
T Consensus       255 ~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al  334 (651)
T 3grl_A          255 YIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETI  334 (651)
T ss_dssp             CGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred             CHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHH
Confidence            99999999875432      1222   3666777777652      24566778999999999998865  567888888


Q ss_pred             HHHHHHHh
Q 040749          632 ALLQLISK  639 (643)
Q Consensus       632 ~lL~~L~~  639 (643)
                      .++..+.+
T Consensus       335 ~tla~~ir  342 (651)
T 3grl_A          335 NTVSEVIR  342 (651)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            87776654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.48  E-value=2.1e-13  Score=133.20  Aligned_cols=71  Identities=21%  Similarity=0.354  Sum_probs=64.3

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCC--cCcccccCCCCccHHHHHHHHHHHHh
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPK--TRQTLAHLSIAPNYALKNLILQWCEK  340 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~--~~~~l~~~~l~pn~~l~~~i~~~~~~  340 (643)
                      ....+|.||||+++|+|||+. .|||+|||.||.+||.. +..+||.  |++.+...++.||..|+.+|+.|..+
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            457789999999999999985 99999999999999986 4568999  99999999999999999999998764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.45  E-value=3.2e-14  Score=126.72  Aligned_cols=70  Identities=17%  Similarity=0.363  Sum_probs=64.0

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc-CCCCccHHHHHHHHHHHHh
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH-LSIAPNYALKNLILQWCEK  340 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~-~~l~pn~~l~~~i~~~~~~  340 (643)
                      +++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++.. ..+.+|..++.+++.|...
T Consensus        49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            456799999999999999999999999999999999766799999999987 7899999999999998754

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.45  E-value=2e-14  Score=110.23  Aligned_cols=54  Identities=24%  Similarity=0.408  Sum_probs=49.7

Q ss_pred             ccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749          274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY  328 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~  328 (643)
                      .|.||||+++|.|||++ +|||+|||.||++|+..+ .+||.|++++...+++||+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~-~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhC-CCCcCCcCCCChhhcEECc
Confidence            58999999999999999 899999999999999874 4799999999999999985

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.41  E-value=1e-13  Score=127.29  Aligned_cols=70  Identities=21%  Similarity=0.423  Sum_probs=64.3

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC-CCCccHHHHHHHHHHHHh
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL-SIAPNYALKNLILQWCEK  340 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~-~l~pn~~l~~~i~~~~~~  340 (643)
                      +++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++... .+.+|..++.+++.|...
T Consensus        75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p~  145 (150)
T 1z6u_A           75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFPG  145 (150)
T ss_dssp             HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHSTT
T ss_pred             CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhhH
Confidence            4667999999999999999999999999999999998777899999999987 899999999999988743

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.35  E-value=9.2e-11  Score=129.06  Aligned_cols=279  Identities=13%  Similarity=0.090  Sum_probs=214.3

Q ss_pred             hHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCch-----------------hHHH-HHhcCCcHHHHHhCCCCChH
Q 040749          360 QKEEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPE-----------------NRIL-IADCGAIPPLVQLLPYPDSK  419 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~-----------------~r~~-i~~~g~i~~Lv~lL~~~d~~  419 (643)
                      ...+++.|+..|+.  .|.+....++..|.++...+++                 +.+. +.+.+.|+.|+.+|.+.|..
T Consensus        58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~  137 (651)
T 3grl_A           58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH  137 (651)
T ss_dssp             HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred             hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence            35679999999986  4778888899999877654432                 1122 34568999999999999999


Q ss_pred             HHHHHHHHHHHhcCCc-c-hHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHh
Q 040749          420 ILEHAVTAVLNLSIDE-S-NKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLL  495 (643)
Q Consensus       420 ~~~~a~~~L~nLs~~~-~-~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL  495 (643)
                      ++..++..|..|+.+. + +++.|. ..++|+.|+.+|.+....+|..++.+|.+|+.......+++. .|+++.|++++
T Consensus       138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii  217 (651)
T 3grl_A          138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII  217 (651)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence            9999999999998743 3 578888 569999999999998999999999999999987766555555 79999999999


Q ss_pred             ccCC----hhhHHHHHHHHHHhccCC-cchHHHHHcCChHHHHHHhccCChh------hHHH---HHHHHHHHhCC----
Q 040749          496 QNGT----IRGKKDAVTALFNLSLNQ-ANKARAIDAGIVLPLMNLLEERNLG------MVDE---ALSILLLLATH----  557 (643)
Q Consensus       496 ~~~~----~~~~~~A~~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~~~~------~~~~---Al~~L~~La~~----  557 (643)
                      +...    ..+..+++.+|.||..+. .|+..+.+.|+++.|..+|..+++.      ...+   ++.++..|+..    
T Consensus       218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~  297 (651)
T 3grl_A          218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP  297 (651)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred             HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            7633    256789999999998754 4888899999999999999753221      2223   66677777553    


Q ss_pred             ---hhhHHHhhcCCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---------cHHHHHHHhhcC-
Q 040749          558 ---PEGRHKIGQLSFIETLVEYIREG--TPKNKECATAVLLELGANNSSFILAALQYG---------VYEHLIQLTEGG-  622 (643)
Q Consensus       558 ---~~~~~~i~~~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---------~i~~L~~ll~~g-  622 (643)
                         ..++.++.+.|++..|++++...  ...++..|+.++..+.++++.....+.+..         ++..|+.++.+. 
T Consensus       298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence               34678899999999999999864  467899999999999999988777765432         233344444433 


Q ss_pred             CHHHHHHHHHHHHHHH
Q 040749          623 TSRAQRKANALLQLIS  638 (643)
Q Consensus       623 ~~~~k~~A~~lL~~L~  638 (643)
                      ....|-.|..+++..-
T Consensus       378 ~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             CHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            5677878887777543

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.34  E-value=4.8e-13  Score=114.03  Aligned_cols=70  Identities=19%  Similarity=0.316  Sum_probs=63.8

Q ss_pred             CCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhc
Q 040749          271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKN  341 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~  341 (643)
                      +++++.||||++.|.+|+++ +|||+||+.||.+|+..+ .+||.|+.++....+.+|..++.+++.|....
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~   89 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYK-TQCPTCCVTVTEPDLKNNRILDELVKSLNFAR   89 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTC-CBCTTTCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCC-CCCCCCCCcCChhhCCcCHHHHHHHHHHHHHH
Confidence            46679999999999999998 899999999999999864 68999999999889999999999999997654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.32  E-value=6.1e-11  Score=115.10  Aligned_cols=190  Identities=18%  Similarity=0.200  Sum_probs=161.7

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      +...++.|++.|.++++.++..|+..|..+..           .++++.|+.+|.++++.++..|+.+|..+.       
T Consensus        17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~-------   78 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------   78 (211)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC-------
T ss_pred             CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence            35679999999999999999999999998752           357899999999999999999999998875       


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                         ..++++.|+..|.++++.++..|+.+|..+.          ..++++.|+.++.++++.++..|+.+|.++..    
T Consensus        79 ---~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  141 (211)
T 3ltm_A           79 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  141 (211)
T ss_dssp             ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----
Confidence               3467899999999999999999999998874          34688999999999999999999999998852    


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                            ..+++.|..++.++++.++..|+.+|..+..          ..+++.|..++.+.++.+|..|..+|..+....
T Consensus       142 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          142 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence                  3478899999998999999999999999843          356888999999999999999999999887654


Q ss_pred             H
Q 040749          600 S  600 (643)
Q Consensus       600 ~  600 (643)
                      +
T Consensus       206 ~  206 (211)
T 3ltm_A          206 H  206 (211)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.31  E-value=7.6e-13  Score=112.93  Aligned_cols=70  Identities=19%  Similarity=0.326  Sum_probs=62.2

Q ss_pred             CCCCccccccCcccccCcee-cCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVI-IASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE  339 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~-~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  339 (643)
                      .+.+++.||||++.|.+||+ ++|||+||+.||.+|+.....+||.|+.++....+.+|..+..+++..-.
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~   88 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDT   88 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHH
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHH
Confidence            35677999999999999999 99999999999999999865789999999999999999888887766544

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.30  E-value=1.2e-12  Score=113.52  Aligned_cols=69  Identities=12%  Similarity=0.356  Sum_probs=61.4

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC----CCCccHHHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL----SIAPNYALKNLILQWCE  339 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~----~l~pn~~l~~~i~~~~~  339 (643)
                      .+++++.||||++.|.+||++ +|||+||+.||.+|+..+ .+||.|+..+...    .+.+|..+..+++.|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS-KYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC-SBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC-CcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            356789999999999999998 999999999999999875 6899999998875    67899999999987754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.29  E-value=6.7e-11  Score=120.13  Aligned_cols=198  Identities=11%  Similarity=0.008  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ...++.|+..|.++++.++..|++.|..+.  +         .++++.|+.+|.++++.++..|+.+|.++...+.....
T Consensus        22 ~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~   90 (280)
T 1oyz_A           22 KLNDDELFRLLDDHNSLKRISSARVLQLRG--G---------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDN   90 (280)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHH
T ss_pred             HhhHHHHHHHHHcCCHHHHHHHHHHHHccC--C---------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchH
Confidence            356888999999989999999999988876  1         23678888889888889999999999888743322111


Q ss_pred             HHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          441 IAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       441 i~~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                           .++.+.. ++.+.++.++..++++|..+...+.    .....+++.|+.++.+.++.++..|+.+|.++..    
T Consensus        91 -----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----  157 (280)
T 1oyz_A           91 -----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND----  157 (280)
T ss_dssp             -----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred             -----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence                 2233332 3456678888888888888753211    0123456777777777777888888887776642    


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                            .++++.|+.++.++++.++..|+.+|..+....        ..+++.|+.++.+.++.+|..|+.+|..+.
T Consensus       158 ------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 ------KATIPLLINLLKDPNGDVRNWAAFAININKYDN--------SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             -------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC--------HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc--------HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence                  246777888887777777777887777764221        235667777777777777777777777664

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.29  E-value=1.2e-10  Score=111.98  Aligned_cols=186  Identities=18%  Similarity=0.202  Sum_probs=162.0

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      ..+..+.+++.|.++++.++..|+..|..+..           .+.++.|+.+|.++++.++..|+.+|..+.       
T Consensus        12 ~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~-------   73 (201)
T 3ltj_A           12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG-------   73 (201)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC-------
T ss_pred             CCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC-------
Confidence            45789999999999999999999999998762           247899999999999999999999998875       


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                         ...+++.|+..|.+.++.++..|+++|..+.          ...+++.|+.++.+.++.++..|+.+|.++..    
T Consensus        74 ---~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           74 ---DERAVEPLIKALKDEDGWVRQSAAVALGQIG----------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               2467899999999999999999999998874          34688999999999999999999999998852    


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                            .++++.|..++.++++.++..|+.+|..+..          ..+++.|..++.+.++.++..|..+|..+-
T Consensus       137 ------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 ------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  4578999999999999999999999998832          247888999999999999999999998764

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.29  E-value=2.2e-12  Score=116.99  Aligned_cols=65  Identities=20%  Similarity=0.410  Sum_probs=52.7

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE  339 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  339 (643)
                      .+++.||||++.|.+||+++|||+||+.||.+|+... .+||.|+.++...  .+|..+...+..+..
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~--~~~~~~~~~i~~~~~  115 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRK-IECPICRKDIKSK--TYSLVLDNCINKMVN  115 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTC-SBCTTTCCBCCCE--EECHHHHHHHHHHHT
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHcC-CcCCCCCCcCCCC--CCccchhHHHHHHHH
Confidence            3568999999999999999999999999999999864 5899999988653  245555556655543

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.29  E-value=6.8e-13  Score=116.42  Aligned_cols=70  Identities=21%  Similarity=0.321  Sum_probs=62.2

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc-------CCCCccHHHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH-------LSIAPNYALKNLILQWCE  339 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~-------~~l~pn~~l~~~i~~~~~  339 (643)
                      ...+++.||||++.+.+||+++|||+||+.||.+|+..+..+||.|+..+..       ..+.+|..+..++..|..
T Consensus        11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~p   87 (115)
T 3l11_A           11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTIIQKHYP   87 (115)
T ss_dssp             CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHHHHHSH
T ss_pred             CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHHHHHCC
Confidence            4567899999999999999999999999999999998877899999999874       567789999999988753

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.28  E-value=1.5e-12  Score=114.73  Aligned_cols=69  Identities=23%  Similarity=0.415  Sum_probs=63.1

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW  337 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  337 (643)
                      ..+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.+|..++..|..+
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l   81 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccc
Confidence            367889999999999999999999999999999999997666899999999998899999998888764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=6.6e-13  Score=109.65  Aligned_cols=64  Identities=30%  Similarity=0.587  Sum_probs=56.9

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcC-----CCCCCCcCcccccCCCCccHHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN-----HRTCPKTRQTLAHLSIAPNYALKN  332 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~-----~~~cP~~~~~l~~~~l~pn~~l~~  332 (643)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+...     ...||.|+.++....+.+|..+++
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            4577899999999999999999999999999999999972     668999999999888888876544

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3e-12  Score=100.33  Aligned_cols=56  Identities=11%  Similarity=0.310  Sum_probs=50.0

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  324 (643)
                      ..+++++.||||++.+.+|++++|||+||+.||.+|+..+..+||.|+.++...++
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           10 KTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            35678899999999999999999999999999999997666789999999876553

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-13  Score=112.64  Aligned_cols=64  Identities=22%  Similarity=0.434  Sum_probs=56.4

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcC------CCCCCCcCcccccCCCCccHHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN------HRTCPKTRQTLAHLSIAPNYALKN  332 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~------~~~cP~~~~~l~~~~l~pn~~l~~  332 (643)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+...      ..+||.|+.++...++.+|+.+++
T Consensus         7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            3567899999999999999999999999999999999863      568999999999888888876543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.28  E-value=3.9e-12  Score=102.12  Aligned_cols=59  Identities=29%  Similarity=0.498  Sum_probs=49.5

Q ss_pred             CCCCCccccccCcccccCceecC-CCCccchHHHHHHHhcC-CCCCCCcCccccc-CCCCcc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIA-SGQTFERESVQKWFDSN-HRTCPKTRQTLAH-LSIAPN  327 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~-cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~-~~l~pn  327 (643)
                      ..+++++.||||++.|.+||+++ |||+||+.||.+|+... ..+||.|+.++.. ..+.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A           10 DPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             CCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             ccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            46788999999999999999999 99999999999999853 3689999997543 334444

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.27  E-value=1.4e-10  Score=112.50  Aligned_cols=187  Identities=19%  Similarity=0.175  Sum_probs=160.7

Q ss_pred             cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749          403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI  482 (643)
Q Consensus       403 ~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i  482 (643)
                      .+.++.|+.+|.++++.++..|+..|..+..          .++++.|+.+|.++++.++..|+.+|..+.         
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~---------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG---------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC---------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC---------
Confidence            4578999999999999999999999987652          468999999999999999999999998874         


Q ss_pred             hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH
Q 040749          483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH  562 (643)
Q Consensus       483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~  562 (643)
                       ..++++.|+.+|.+.++.++..|+.+|.++..          .++++.|+.++.++++.++..|+.+|..+..      
T Consensus        79 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------  141 (211)
T 3ltm_A           79 -DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------  141 (211)
T ss_dssp             -CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------
T ss_pred             -CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC------
Confidence             35688999999999999999999999998853          3578999999999999999999999998843      


Q ss_pred             HhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          563 KIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       563 ~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                          ...++.|..++.+.++.++..|+.+|..+..           ..+++.|..++.++++.+|..|...|..+...
T Consensus       142 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~  204 (211)
T 3ltm_A          142 ----ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETHKSF  204 (211)
T ss_dssp             ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred             ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence                3578899999998999999999999999853           24688899999999999999999999887653

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.26  E-value=1.2e-12  Score=115.19  Aligned_cols=67  Identities=18%  Similarity=0.297  Sum_probs=61.5

Q ss_pred             CCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHh
Q 040749          271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEK  340 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~  340 (643)
                      +.+++.||||+++|.+||++ +|||+||+.||.+|+.   ..||.|+.++....+.+|..++.+++.|...
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~   86 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHH
Confidence            45679999999999999999 9999999999999997   5799999999988999999999999887654

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=3.1e-12  Score=104.63  Aligned_cols=62  Identities=18%  Similarity=0.223  Sum_probs=53.1

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNL  333 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~  333 (643)
                      ...+++.||||++.+.+||+++|||+||+.||.+|+.. ..+||.|+.++. ..+.+|..+...
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~~   72 (81)
T 2csy_A           11 EEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMAK   72 (81)
T ss_dssp             CCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHHH
T ss_pred             cCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHHH
Confidence            45678999999999999999999999999999999986 458999999997 567788555433

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.26  E-value=2.1e-12  Score=120.92  Aligned_cols=70  Identities=21%  Similarity=0.490  Sum_probs=62.3

Q ss_pred             CCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccc-cCCCCccHHHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLA-HLSIAPNYALKNLILQWCE  339 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~-~~~l~pn~~l~~~i~~~~~  339 (643)
                      .+.+++.||||++.|.+||++ +|||+||+.||.+|+..+..+||.|+.++. ...+.||..+..+|..|..
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~  121 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYP  121 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHc
Confidence            456789999999999999998 999999999999999987789999999985 4568899999999998854

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=9.2e-13  Score=108.77  Aligned_cols=64  Identities=25%  Similarity=0.533  Sum_probs=56.8

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc-----CCCCCCCcCcccccCCCCccHHHHH
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS-----NHRTCPKTRQTLAHLSIAPNYALKN  332 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~-----~~~~cP~~~~~l~~~~l~pn~~l~~  332 (643)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+..     +...||.|+..+...++.+|+.++.
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            457888999999999999999999999999999999986     3568999999999988888876543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=8.6e-12  Score=99.51  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=52.0

Q ss_pred             CCCCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          269 LVIPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      ..+.+++.||||++.+.+|+++ +|||+||+.||.+|+.. ..+||.|+.++...++.+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A           10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            4578899999999999999997 99999999999999987 4689999999998877665

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.22  E-value=2.8e-10  Score=109.43  Aligned_cols=185  Identities=19%  Similarity=0.193  Sum_probs=160.1

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG  483 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~  483 (643)
                      +..+.++++|.++++.++..|+.+|..+..          .++++.|+..|.++++.++..|+.+|..+.          
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~----------   73 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIG----------   73 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhC----------
Confidence            467889999999999999999999987652          467899999999999999999999998763          


Q ss_pred             ccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHH
Q 040749          484 LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHK  563 (643)
Q Consensus       484 ~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~  563 (643)
                      ..++++.|+.+|.+.++.++..|+.+|.++..          ..+++.|+.++.++++.++..|+.+|..+..       
T Consensus        74 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------  136 (201)
T 3ltj_A           74 DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-------  136 (201)
T ss_dssp             CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-------
T ss_pred             CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-------
Confidence            34689999999999999999999999998753          3478899999999999999999999998853       


Q ss_pred             hhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          564 IGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       564 i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                         ...++.|..++.+.++.++..|+.+|..+..  +         .+++.|..++.+.++.+|..|...|..+..
T Consensus       137 ---~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~~  198 (201)
T 3ltj_A          137 ---ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLETHKS  198 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC-
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence               3578899999999999999999999999832  2         368889999999999999999999988754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.8e-11  Score=97.93  Aligned_cols=56  Identities=25%  Similarity=0.540  Sum_probs=49.4

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHh--cCCCCCCCcCcccccCCC
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFD--SNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~--~~~~~cP~~~~~l~~~~l  324 (643)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+.  .+..+||.|++++...++
T Consensus        15 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             HhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            45788999999999999999999999999999999997  356689999999876543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.19  E-value=5.9e-12  Score=109.79  Aligned_cols=67  Identities=19%  Similarity=0.434  Sum_probs=57.1

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhcC--CCCCCCcCcccccCCCCccHHHHHHHHHHH
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHLSIAPNYALKNLILQWC  338 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  338 (643)
                      .+.+.||||++.+.+|++++|||+||+.||.+|+...  ..+||.|+.++....+.+|..+..+++.+.
T Consensus        19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~   87 (112)
T 1jm7_A           19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (112)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence            4468899999999999999999999999999999853  358999999999988888876666665543

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=3.5e-11  Score=93.23  Aligned_cols=47  Identities=28%  Similarity=0.596  Sum_probs=42.5

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKT  315 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~  315 (643)
                      ..+.+++.||||++.+.+|++++|||+||+.||.+|+..  +..+||.|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            357889999999999999999999999999999999985  45689987

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.16  E-value=1.9e-11  Score=95.37  Aligned_cols=55  Identities=20%  Similarity=0.364  Sum_probs=49.3

Q ss_pred             CccccccCcc-cccCc----eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          273 HEFLCPITLE-IMRDP----VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       273 ~~f~CpIc~~-~m~dP----v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      +++.||||++ .+.+|    ++++|||+||+.||.+|+..+..+||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999998777789999999998887765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.14  E-value=1.5e-11  Score=108.03  Aligned_cols=67  Identities=19%  Similarity=0.314  Sum_probs=56.8

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC-ccHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA-PNYALKNLILQ  336 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i~~  336 (643)
                      .+++++.||||++.|.+||+++|||+||+.||.+|+..+..+||.|+.++...++. ++..+..++..
T Consensus        19 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~   86 (116)
T 1rmd_A           19 HFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNS   86 (116)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHH
T ss_pred             hccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHH
Confidence            35667999999999999999999999999999999998667899999999887765 45566666544

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.14  E-value=1.1e-11  Score=112.43  Aligned_cols=67  Identities=15%  Similarity=0.291  Sum_probs=57.1

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccc---------cCCCCccHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA---------HLSIAPNYALKNLILQ  336 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~---------~~~l~pn~~l~~~i~~  336 (643)
                      .++++|.||||+++|.+||.++|||+||+.||.+|+..+..+||.|+.++.         ...+.|+..++..|..
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            578899999999999999999999999999999999977778999998653         3345688887777653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.13  E-value=2.1e-11  Score=114.67  Aligned_cols=68  Identities=24%  Similarity=0.432  Sum_probs=62.3

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHH
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQW  337 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~  337 (643)
                      .++++|.||||+++|.+||+++|||+||+.||.+|+..+..+||.|+.++....+.||..++..|..+
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            67899999999999999999999999999999999987666899999999999899999888887653

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.11  E-value=2.3e-09  Score=108.74  Aligned_cols=200  Identities=12%  Similarity=0.042  Sum_probs=155.6

Q ss_pred             HhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchh
Q 040749          401 ADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKI  480 (643)
Q Consensus       401 ~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~  480 (643)
                      ...+.++.|+..|.++++.++..|+.+|.++.          ..++++.|+.+|.++++.++..|+++|..+...+... 
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~----------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~-   88 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRG----------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE-   88 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHC----------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH-
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccC----------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc-
Confidence            44678999999999999999999999999886          2356889999999999999999999999886432210 


Q ss_pred             hhhccCChHHHHH-HhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChh
Q 040749          481 TIGLSDGIPPLVD-LLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPE  559 (643)
Q Consensus       481 ~i~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~  559 (643)
                          ...++.|.. ++.+.++.++..|+.+|.++.......    ...+++.|+..+.++++.++..|+.+|.++..   
T Consensus        89 ----~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---  157 (280)
T 1oyz_A           89 ----DNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRRATAFAISVIND---  157 (280)
T ss_dssp             ----HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----
T ss_pred             ----hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC---
Confidence                012233332 346778899999999999987432211    12457889999999999999999999987653   


Q ss_pred             hHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          560 GRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       560 ~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                             .+.++.|+.++.+.++.+|..|+.+|..+...++         .+++.|..++.+.++.+|..|...|..+.
T Consensus       158 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          158 -------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGLSYRK  220 (280)
T ss_dssp             --------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence                   3589999999999999999999999999864443         35677888888888888888888887765

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.08  E-value=4.5e-11  Score=94.99  Aligned_cols=58  Identities=22%  Similarity=0.454  Sum_probs=51.3

Q ss_pred             CCCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749          270 VIPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY  328 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~  328 (643)
                      ...+++.||||++.+.+|       ++++|||+||+.||.+|+... .+||.|+.++...++.+++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~   70 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY   70 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCCBCCCCSCCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC-CCCCCCCCccChhheeecc
Confidence            346789999999999998       889999999999999999875 5899999999988887753

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=1.8e-10  Score=95.65  Aligned_cols=55  Identities=24%  Similarity=0.441  Sum_probs=48.6

Q ss_pred             CCCCCccccccCcccccC----ceecCCCCccchHHHHHHHhcC--CCCCCCcCcccccCC
Q 040749          269 LVIPHEFLCPITLEIMRD----PVIIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHLS  323 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~  323 (643)
                      ..+.+++.||||++.+.+    |++++|||+||+.||.+|+...  ..+||.|+.++...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            457788999999999999    9999999999999999999964  468999999887643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.05  E-value=4.5e-10  Score=132.28  Aligned_cols=273  Identities=13%  Similarity=0.058  Sum_probs=194.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch--H
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN--K  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~--k  438 (643)
                      ...++.+++.+.+.++++|..|+..+..+....+..-.. .-.+.++.|+.++..+++.++..|+.+|.+++.....  +
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~  251 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL  251 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH
Confidence            356788888888999999999999999887544321100 0124678888989999999999999999999863221  1


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHh-----------cc--------
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLL-----------QN--------  497 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL-----------~~--------  497 (643)
                      ..+  .+.++.++.++++.+++++..|+..+..++.....+..+..  ...+|.++..+           .+        
T Consensus       252 ~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          252 PHM--HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            111  24678888888888899999999999998865443332221  24566776666           22        


Q ss_pred             ---CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHH
Q 040749          498 ---GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLV  574 (643)
Q Consensus       498 ---~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv  574 (643)
                         .+..+++.|+.+|..|+...+.  .++ ..+++.+.+++.++++.++..|+.+|.+++........-.-.++++.++
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~  406 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLI  406 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence               2335688899999888753322  111 2356777777888889999999999999988543221112246788899


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          575 EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       575 ~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ..+.+.++.+|..|+++|..++...+.......-.++++.|+..+.+.++++|..|.+.|..+.+
T Consensus       407 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          407 QCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986422110011113578888888888999999999999998875

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.3e-10  Score=88.29  Aligned_cols=46  Identities=28%  Similarity=0.744  Sum_probs=41.6

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhc--CCCCCCCc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKT  315 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~--~~~~cP~~  315 (643)
                      .+.+++.||||++.+.+|++++|||+||+.||.+|+..  +..+||.|
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            56788999999999999999999999999999999874  56789987

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.04  E-value=1.8e-09  Score=127.14  Aligned_cols=274  Identities=15%  Similarity=0.120  Sum_probs=197.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHH----hcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIA----DCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~----~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      +.++.+++.+.++++..+..|+..|..+++..+..-..-.    -...+|.|+++++++++.++..|+.+|.++......
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~  207 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ  207 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH
Confidence            5789999999999999999999999999865443211100    123678889999999999999999999988764332


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ...-.-...++.+..++.+++++++..|+.+|..++........-.-.+.++.++.++.+.++.++..|+.++.+++...
T Consensus       208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~  287 (852)
T 4fdd_A          208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQP  287 (852)
T ss_dssp             HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcch
Confidence            11111235678888888889999999999999999754321110001357788888888888999999999999998654


Q ss_pred             cchHHHHH---cCChHHHHHHh-----------cc-----------CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHH
Q 040749          518 ANKARAID---AGIVLPLMNLL-----------EE-----------RNLGMVDEALSILLLLATHPEGRHKIGQLSFIET  572 (643)
Q Consensus       518 ~n~~~lv~---~G~v~~Lv~lL-----------~~-----------~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~  572 (643)
                      ..+. .+.   ..+++.++..+           .+           .+..++..|..+|..++....  ..+. ..+++.
T Consensus       288 ~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~  363 (852)
T 4fdd_A          288 ICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL-PHILPL  363 (852)
T ss_dssp             THHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHH
Confidence            3322 222   23456666665           22           123457778888888876432  1222 246777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          573 LVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       573 Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +...+.+.++..|+.|+.+|..++.+.+..... .-.++++.|+..+.+.++++|..|.++|..+...
T Consensus       364 l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          364 LKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            888888888999999999999999877653322 2245789999999999999999999999887753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.4e-10  Score=92.21  Aligned_cols=51  Identities=20%  Similarity=0.172  Sum_probs=45.8

Q ss_pred             CCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL  322 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~  322 (643)
                      ..+++.||||++.+.+|++++|||+||+.||.+|+..+ .+||.|+..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~-~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG-KRCALCRQEIPED   62 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS-SBCSSSCCBCCHH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC-CcCcCcCchhCHh
Confidence            45679999999999999999999999999999999865 6899999987753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=98.98  E-value=1.1e-10  Score=90.69  Aligned_cols=54  Identities=22%  Similarity=0.454  Sum_probs=47.9

Q ss_pred             CccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          273 HEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       273 ~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      +++.||||++.+.+|       ++++|||+||+.||.+|+.. +.+||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            468899999999988       78899999999999999987 4589999999988776654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3.1e-10  Score=89.46  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=46.1

Q ss_pred             CCCCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          269 LVIPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ..+++++.||||++.+.+|       ++++|||+||..||.+|+.. ..+||.|+.++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            3567889999999999998       88999999999999999987 4589999998764

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.94  E-value=7.1e-10  Score=89.37  Aligned_cols=55  Identities=16%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             CCCCccccccCcccc--cCceecC--CCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749          270 VIPHEFLCPITLEIM--RDPVIIA--SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m--~dPv~~~--cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  324 (643)
                      .+.+++.||||++.+  .|+++.+  |||+||+.|+.+|+..+...||.|++++....+
T Consensus         7 ~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            7 AKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            467889999999998  4667766  999999999999998777889999999886544

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.93  E-value=8e-10  Score=89.43  Aligned_cols=57  Identities=19%  Similarity=0.428  Sum_probs=48.7

Q ss_pred             CCCCccccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          270 VIPHEFLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      ...+++.||||++.|.+|   ++++|||+||+.||.+|+... .+||.|+..+....+.+|
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A           11 HVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH-DSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             TSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT-CSCTTTCCCCCCSCSCCC
T ss_pred             cCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC-CcCcCcCCccCCcccCCC
Confidence            456789999999999876   456999999999999999864 689999999988777665

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.91  E-value=7.1e-09  Score=115.90  Aligned_cols=264  Identities=14%  Similarity=0.032  Sum_probs=196.0

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..++.+...+.+.++.++..+++.|..++..-..  . ......+|.+..+++.+++.++..++.+|..+...-... . 
T Consensus       324 ~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~-  398 (588)
T 1b3u_A          324 QILPCIKELVSDANQHVKSALASVIMGLSPILGK--D-NTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-  398 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH--H-HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH--h-HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH-H-
Confidence            4577788888999999999999999988743211  1 122347899999999989999999998888776421111 1 


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKA  521 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~  521 (643)
                      .....+|.+..++.+.++.+|..++.+|..++..-..  .......+|.+..++.+.+..++..|+.+|..++..-+.. 
T Consensus       399 ~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-  475 (588)
T 1b3u_A          399 LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGV--EFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKE-  475 (588)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCG--GGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-
T ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCch-
Confidence            1235678888889888999999999999988642111  1122346788889999889999999999999987543222 


Q ss_pred             HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH
Q 040749          522 RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSS  601 (643)
Q Consensus       522 ~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~  601 (643)
                       .....++|.|..++.+++..++..++.++..++..-. ... ....+++.+...+.+.++.+|..++.+|..++..-+.
T Consensus       476 -~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~-~~~-~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  552 (588)
T 1b3u_A          476 -WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG-QDI-TTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN  552 (588)
T ss_dssp             -HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHH-HHH-HHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred             -hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcC-HHH-HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence             2234578888888888888899999999999876321 111 2236788899999888999999999999999865332


Q ss_pred             HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          602 FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       602 ~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .   .....+++.|..++.+.++++|..|...|..+.+
T Consensus       553 ~---~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~~  587 (588)
T 1b3u_A          553 S---TLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSL  587 (588)
T ss_dssp             H---HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTTC
T ss_pred             h---hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhhc
Confidence            2   1224567888888888999999999999987753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.89  E-value=1.4e-08  Score=113.50  Aligned_cols=227  Identities=14%  Similarity=0.111  Sum_probs=163.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..++.+...+.+.++.+|..|+..|..++...+..   ......+|.|..++..++..++..|+.+|..++..-...  .
T Consensus       164 ~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  238 (588)
T 1b3u_A          164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE--D  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH--H
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH--H
Confidence            45667777788889999999999999998544321   223567899999999999999999999999887532211  1


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc--
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN--  519 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n--  519 (643)
                      .....++.+..++.+.++.+|..++.+|..++..-..  .......++.++.++++.++.++..|+.+|..++..-..  
T Consensus       239 ~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  316 (588)
T 1b3u_A          239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhh
Confidence            2345788888899888999999999999998753211  112345789999999999999999999999998764322  


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGA  597 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~  597 (643)
                      +....-..++|.+..++.++++.++..++.+|..++..-.. .. .....++.+..++.+.++.+|..|+.+|..++.
T Consensus       317 ~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~-~~-~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~  392 (588)
T 1b3u_A          317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK-DN-TIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE  392 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH-HH-HHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH
T ss_pred             hhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhH-hH-HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHH
Confidence            22123345677888888888888888888888777642111 11 112456777777777777777777777666654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.86  E-value=1e-08  Score=110.95  Aligned_cols=273  Identities=15%  Similarity=0.101  Sum_probs=187.7

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc
Q 040749          362 EEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       362 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~  436 (643)
                      +.++.+++.+.++  ++..+..|+..|..++.+. +..-.... ...++.++.+|.++  ++.++..|+.++.++...-.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~  206 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999988  8999999999999998643 21100001 23678888999887  78999999999998764211


Q ss_pred             -h-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          437 -N-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       437 -~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                       + .......-.++.+...+.+++.+++..++.+|..+......  ...+. .+.++.++..+++.++.++..|+..+.+
T Consensus       207 ~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~a~~~l~~  285 (462)
T 1ibr_B          207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSN  285 (462)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence             1 00111111355666677778899999999999998754321  11111 1667777888888888999999998888


Q ss_pred             hccCCc------------------chHHHHH---cCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749          513 LSLNQA------------------NKARAID---AGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKI  564 (643)
Q Consensus       513 Ls~~~~------------------n~~~lv~---~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i  564 (643)
                      ++....                  ....+++   ..++|.+++.+.+       .+..++..|..+|..++..-.  ..+
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~~  363 (462)
T 1ibr_B          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI  363 (462)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TTH
T ss_pred             HHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HHH
Confidence            875320                  0001111   3356667777743       234678888899988876422  122


Q ss_pred             hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      . ..+++.+...+.+.+...|+.|+.+|..++.+.. ...... -..+++.|+..+.+.++++|..|.++|..+...
T Consensus       364 ~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~  438 (462)
T 1ibr_B          364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (462)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            2 2466777777788889999999999999987543 211111 156899999999999999999999999988754

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=98.82  E-value=2.6e-09  Score=80.06  Aligned_cols=47  Identities=19%  Similarity=0.395  Sum_probs=41.6

Q ss_pred             CccccccCcccccC----ceecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          273 HEFLCPITLEIMRD----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       273 ~~f~CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +++.||||++.+.+    |++++|||+||..||.+|+... .+||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46789999999976    7888999999999999999986 68999998764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.81  E-value=7.6e-08  Score=108.48  Aligned_cols=264  Identities=17%  Similarity=0.126  Sum_probs=182.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH-H
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK-R  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k-~  439 (643)
                      ...++.+.+.|.+.++.+|..|+.++..+...+++.   +.+.++++.|..+|..+|+.++.+|+.+|..++.++... .
T Consensus       120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~  196 (591)
T 2vgl_B          120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNL  196 (591)
T ss_dssp             HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCS
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccc
Confidence            355777889999999999999999999999776653   233578899999999999999999999999998764321 0


Q ss_pred             HHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC---
Q 040749          440 LIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN---  516 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~---  516 (643)
                      .-...+.+..|+..+...++..+.....+|..+...++..    ....++.+..++++.+..+...|+.++.++...   
T Consensus       197 ~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~  272 (591)
T 2vgl_B          197 LDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPK  272 (591)
T ss_dssp             CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCB
T ss_pred             hhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCC
Confidence            0012344677777777788888888888888876432211    135677888888888999999999999998742   


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-Chhh------------------HH-H------hhcCC--
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEG------------------RH-K------IGQLS--  568 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~------------------~~-~------i~~~g--  568 (643)
                      ++.....+-..+.+.|+.++. ++++++-.|+..|..++. +++.                  |. +      +....  
T Consensus       273 ~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv  351 (591)
T 2vgl_B          273 DSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANI  351 (591)
T ss_dssp             TTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTH
T ss_pred             CHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhH
Confidence            222222233445677776554 677888888888877764 1110                  11 1      11222  


Q ss_pred             --cHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          569 --FIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       569 --~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                        .++.|..++.+.+...+..++..+..++...+....     ..++.|+.++....+.++..+...++.+
T Consensus       352 ~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          352 AQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence              234455555667888899999999998877653322     3567777777777666666665555544

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.80  E-value=2.2e-08  Score=114.71  Aligned_cols=194  Identities=15%  Similarity=0.122  Sum_probs=153.5

Q ss_pred             cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHH-HHhccCChhhHHHHHHHHHHhccC--Ccch
Q 040749          444 QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV-DLLQNGTIRGKKDAVTALFNLSLN--QANK  520 (643)
Q Consensus       444 ~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv-~lL~~~~~~~~~~A~~aL~nLs~~--~~n~  520 (643)
                      ...|.++++.|++++++.|..|+++|.+|+.++..+..+...++|..++ .+|.+.+..++..|+++|.||+..  .+.+
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            3456778888999999999999999999999888888888888887765 567888999999999999999965  4567


Q ss_pred             HHHHHcCChHHHHHHhccCC---------------------hhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHh
Q 040749          521 ARAIDAGIVLPLMNLLEERN---------------------LGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIR  578 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~---------------------~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~  578 (643)
                      ..+++.|++++|..+|....                     ..+.+.++.+|++||. +.+....+...+.++.|+..|.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            78999999999999985410                     1345678899999987 5566777888899999999885


Q ss_pred             cC---ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCc---HHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          579 EG---TPKNKECATAVLLELGANNSSFILAALQYGV---YEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       579 ~~---s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~---i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      +.   ...++..|+.+|..++..++.....+.+.+.   +..|..+..+.++ .+..+.++|.++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~-~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP-RAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT-THHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH-HHHHHHHHHHhHh
Confidence            42   3578999999999999999988888877654   4444444444443 4667778888764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=1.3e-09  Score=86.14  Aligned_cols=52  Identities=27%  Similarity=0.569  Sum_probs=46.1

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      .+.+.+.||||++.+.+ ++++|||+||..||.+|+.. ..+||.|+.++...+
T Consensus        11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred             cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence            46778999999999999 99999999999999999984 568999999887654

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=98.79  E-value=3.6e-09  Score=83.10  Aligned_cols=48  Identities=23%  Similarity=0.434  Sum_probs=42.5

Q ss_pred             CccccccCcccccCc-eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          273 HEFLCPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~m~dP-v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ++..||||++.+.+| +.++|||+||..||.+|+..+ .+||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc-CcCcCCChhhHh
Confidence            457899999999997 678999999999999999865 589999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.78  E-value=2.6e-08  Score=114.13  Aligned_cols=217  Identities=15%  Similarity=0.093  Sum_probs=158.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHH-HhCCCCChHHHHHHHHHHHHhcCCc--ch
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDSKILEHAVTAVLNLSIDE--SN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~d~~~~~~a~~~L~nLs~~~--~~  437 (643)
                      ...+..+++.|+|++++.|..|+.+|.+++ .++.+|..+...|+|+.++ .+|..++.++++.|+++|.||+.+.  +.
T Consensus        33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~-~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           33 EDKILPVLKDLKSPDAKSRTTAAGAIANIV-QDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHTTHHHHHHHSSSCCSHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhHHHHHHHcCCCCHHHHHHHHHHHHHHH-cCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            456778999999999999999999999999 5889999999999988765 5788889999999999999999754  45


Q ss_pred             HHHHHhcCChHHHHHHhcCC--------------C-------HHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHh
Q 040749          438 KRLIAQQGAIPAIIEILQSG--------------S-------TEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLL  495 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~--------------~-------~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL  495 (643)
                      ...++..|++++|..+|+..              .       .++..+++.+|++|+... +....+...+.++.|+.+|
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence            67788999999999988531              0       234567888999998554 4555677789999999998


Q ss_pred             ccC---ChhhHHHHHHHHHHhccCCcchHH-HHHcCChHHHHHHh--ccCChhhHHHHHHHHHHHhC------ChhhHHH
Q 040749          496 QNG---TIRGKKDAVTALFNLSLNQANKAR-AIDAGIVLPLMNLL--EERNLGMVDEALSILLLLAT------HPEGRHK  563 (643)
Q Consensus       496 ~~~---~~~~~~~A~~aL~nLs~~~~n~~~-lv~~G~v~~Lv~lL--~~~~~~~~~~Al~~L~~La~------~~~~~~~  563 (643)
                      .+.   ..++...|+.+|++|+........ +.+.|....+..++  ...+......++++|.|+..      .......
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~~~~~~d~s~~~~~  271 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDPRAVMACGVLHNVFTSLQWMDHSPGKDG  271 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHHHHTCBTTBCCGGG
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHhhhhhhhhcchhhHH
Confidence            543   357889999999999986555444 55555433322222  23444556778899999842      1222333


Q ss_pred             hhcCCcHHHHHHHHh
Q 040749          564 IGQLSFIETLVEYIR  578 (643)
Q Consensus       564 i~~~g~i~~Lv~lL~  578 (643)
                      +...-.++.+...+.
T Consensus       272 ~~~~~li~~l~~~l~  286 (684)
T 4gmo_A          272 ACDAILIPTLTRALE  286 (684)
T ss_dssp             CSGGGTHHHHHHHHT
T ss_pred             HHHHHHHHhhhhhHh
Confidence            333344555555443

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=5.6e-09  Score=83.48  Aligned_cols=52  Identities=21%  Similarity=0.494  Sum_probs=44.7

Q ss_pred             CCCCccccccCcccccCceec---CCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749          270 VIPHEFLCPITLEIMRDPVII---ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL  322 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~---~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~  322 (643)
                      +..++..||||++.+.+|..+   +|||+||+.||.+|+... .+||.|+.++...
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~-~~CP~Cr~~~~~~   65 (74)
T 2ep4_A           11 ELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPVLQL   65 (74)
T ss_dssp             CCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC-SBCTTTCCBCSSC
T ss_pred             cCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC-CcCCCcCcccccc
Confidence            567788999999999887554   999999999999999875 4899999987653

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.75  E-value=2e-09  Score=81.01  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=40.8

Q ss_pred             CCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .+++.||||++.+.+|++++|||+||+.||.+|    ...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            467899999999999999999999999999873    4689999988764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.75  E-value=5.4e-09  Score=78.28  Aligned_cols=49  Identities=31%  Similarity=0.651  Sum_probs=42.3

Q ss_pred             CCCccccccCcccccC---ceecC-CCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          271 IPHEFLCPITLEIMRD---PVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~d---Pv~~~-cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +.++..||||++.+.+   ++.++ |||.||..||.+|+.. +.+||.|+.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            3467889999999988   78887 9999999999999986 468999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=98.73  E-value=1.1e-08  Score=80.48  Aligned_cols=52  Identities=25%  Similarity=0.450  Sum_probs=43.5

Q ss_pred             CCCCccccccCccccc---CceecCCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749          270 VIPHEFLCPITLEIMR---DPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHL  322 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~---dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~  322 (643)
                      ...++..||||++.+.   ++++++|||+||..||.+|+..+ .+||.|+..+...
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~   64 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN-KKCPICRVDIEAQ   64 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC-SBCTTTCSBSCSC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC-CCCcCcCccccCc
Confidence            3456789999999885   45778999999999999999875 4799999987753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.73  E-value=3.1e-09  Score=95.23  Aligned_cols=55  Identities=22%  Similarity=0.459  Sum_probs=48.6

Q ss_pred             CCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          272 PHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      ++++.||||++.+.+|       ++++|||+||+.||.+|+... .+||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC-SBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC-CCCCCCCCcCcccccccc
Confidence            5679999999999999       899999999999999999865 489999999987766554

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.70  E-value=9.7e-09  Score=85.64  Aligned_cols=51  Identities=22%  Similarity=0.476  Sum_probs=44.1

Q ss_pred             CCCCccccccCcccccC---ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          270 VIPHEFLCPITLEIMRD---PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~d---Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ...++..||||++.+.+   ++.++|||.||..||.+|+... .+||.|+..+..
T Consensus        36 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~   89 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKS-GTCPVCRCMFPP   89 (91)
T ss_dssp             SSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTT-CBCTTTCCBSSC
T ss_pred             ccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcC-CcCcCcCccCCC
Confidence            34567899999999987   7888999999999999999864 589999988764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.70  E-value=1.7e-07  Score=105.57  Aligned_cols=255  Identities=16%  Similarity=0.130  Sum_probs=186.1

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ++.+..+-+.|.+++.+.+..++..+-.+...+.+.      ..+.+.+++++.+++..++..+..++.+++....  +.
T Consensus        12 ~~e~~~i~~~L~~~~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~--e~   83 (591)
T 2vgl_B           12 KGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQP--DM   83 (591)
T ss_dssp             SSHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSH--HH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCc--hH
Confidence            456788889999999888887776555443222211      2356778899999999999888888887765221  11


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                      +  .-++..+.+-|.++++.+|..|+.+|+++.. ++.     ....++.+..++.+.++.+++.|+.++.++....+..
T Consensus        84 ~--~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~-~~~-----~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~  155 (591)
T 2vgl_B           84 A--IMAVNSFVKDCEDPNPLIRALAVRTMGCIRV-DKI-----TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM  155 (591)
T ss_dssp             H--HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCS-GGG-----HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC
T ss_pred             H--HHHHHHHHHHcCCCCHHHHHHHHHHHHcCCh-HHH-----HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh
Confidence            1  2346777778888999999999999998862 221     1334678999999999999999999999998744332


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH-HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR-HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~-~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                        +.+.+.++.|..+|.++++.++..|+.+|..++...... ......+.+..|+..+...++..+-..+.+|..++..+
T Consensus       156 --~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~  233 (591)
T 2vgl_B          156 --VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKD  233 (591)
T ss_dssp             --HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCS
T ss_pred             --cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCC
Confidence              233578899999999999999999999999998754211 11111245777888888888888888888888887665


Q ss_pred             HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      +....     .+++.+..++.+.++.++..|.+++..+.
T Consensus       234 ~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~  267 (591)
T 2vgl_B          234 DREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFL  267 (591)
T ss_dssp             HHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSC
T ss_pred             hHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHh
Confidence            54332     35667777788888888888888887764

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.68  E-value=1.1e-08  Score=81.97  Aligned_cols=50  Identities=24%  Similarity=0.539  Sum_probs=43.6

Q ss_pred             CCCccccccCcccccCc---eecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          271 IPHEFLCPITLEIMRDP---VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dP---v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      ..++..||||++.+.++   +.++|||.||..||.+|+... .+||.|++++..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~-~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN-RTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC-SSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC-CcCcCcCCcCCC
Confidence            34668899999999988   678999999999999999875 589999988765

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.66  E-value=1.6e-08  Score=88.20  Aligned_cols=50  Identities=14%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             CCccccccCcccccCce------------------ecCCCCccchHHHHHHHh----cCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPV------------------IIASGQTFERESVQKWFD----SNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv------------------~~~cg~ty~r~~I~~~~~----~~~~~cP~~~~~l~~  321 (643)
                      +.+..||||++.|.+|+                  +++|||.||+.||.+|+.    ..+.+||.|+..+..
T Consensus        23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            34568999999998876                  679999999999999996    345689999988764

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.59  E-value=1.6e-08  Score=105.21  Aligned_cols=51  Identities=24%  Similarity=0.359  Sum_probs=45.6

Q ss_pred             CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      ....||||++.+.+|++++|||+||..||.+|+..+..+||.|+.++....
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            347999999999999999999999999999999866678999999887643

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.59  E-value=9e-09  Score=82.25  Aligned_cols=45  Identities=18%  Similarity=0.338  Sum_probs=40.9

Q ss_pred             CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .+++.|+||++.+.+||+++|||+ ||..|+.+|     ..||.|+.++..
T Consensus        22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            456889999999999999999999 999999998     579999998765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.59  E-value=1.5e-06  Score=98.34  Aligned_cols=257  Identities=12%  Similarity=0.103  Sum_probs=174.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      .....++.+.+.+.+.++-+--.+..++..+++....     ++..|.+-|.++++.++..|+.+|+++...     .+.
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-----~~~  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQFVQGLALCTLGCMGSS-----EMC  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-----HHH
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-----HHH
Confidence            4556677778888888887777888888666543222     456778888899999999999999999831     222


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR  522 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~  522 (643)
                       ...++.+...|.+.++.+|..|+.++.++.....  ..+  .+.++.+..+|.+.++.++..|+.+|..++..+.....
T Consensus       141 -~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          141 -RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELM--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             -HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGG--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             -HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHH--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHH
Confidence             3467888899999999999999999999875321  111  36788888889888999999999999999865432211


Q ss_pred             HHHcCChHHHHHHhcc---------------CChhhHHHHHHHHHHHhCC-hhhHHH-----------------------
Q 040749          523 AIDAGIVLPLMNLLEE---------------RNLGMVDEALSILLLLATH-PEGRHK-----------------------  563 (643)
Q Consensus       523 lv~~G~v~~Lv~lL~~---------------~~~~~~~~Al~~L~~La~~-~~~~~~-----------------------  563 (643)
                      .. ...++.++.+|.+               .++-.+...+.+|..++.. ++....                       
T Consensus       216 ~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~  294 (618)
T 1w63_A          216 HF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAIL  294 (618)
T ss_dssp             HH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHH
Confidence            11 2566777766643               2445555566666666542 111100                       


Q ss_pred             ------hhc--------CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHH
Q 040749          564 ------IGQ--------LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRK  629 (643)
Q Consensus       564 ------i~~--------~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~  629 (643)
                            +..        ..++..|..++.+.++.+|..|+..|..++...+...     ......++..+.+.+..+|.+
T Consensus       295 ~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~d~~Ir~~  369 (618)
T 1w63_A          295 YETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDLDVSIKRR  369 (618)
T ss_dssp             HHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCCChhHHHH
Confidence                  000        0245666677777777888888888877776544321     124556777777778888888


Q ss_pred             HHHHHHHHHhh
Q 040749          630 ANALLQLISKS  640 (643)
Q Consensus       630 A~~lL~~L~~~  640 (643)
                      |..+|..+.+.
T Consensus       370 alelL~~l~~~  380 (618)
T 1w63_A          370 AMELSFALVNG  380 (618)
T ss_dssp             HHHHHHHHCCS
T ss_pred             HHHHHHHHccc
Confidence            88888777654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.57  E-value=2.2e-06  Score=96.95  Aligned_cols=251  Identities=14%  Similarity=0.104  Sum_probs=183.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-HHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-KRL  440 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k~~  440 (643)
                      ..++.+.+.|.+.++.++..|+.++..+...+|+..     .++++.+..+|...|+.++..|+.+|..++..+.. ...
T Consensus       142 ~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~  216 (618)
T 1w63_A          142 DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAH  216 (618)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHH
Confidence            457888899999999999999999999998777543     26888899999999999999999999999875432 122


Q ss_pred             HHhcCChHHHHHHhcC---------------CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc------CC
Q 040749          441 IAQQGAIPAIIEILQS---------------GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN------GT  499 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~---------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~------~~  499 (643)
                      +  ...++.++.+|..               .++..+...+.+|..+...+...    ....++.|..++..      .+
T Consensus       217 ~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~  290 (618)
T 1w63_A          217 F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVG  290 (618)
T ss_dssp             H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHH
T ss_pred             H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchH
Confidence            2  3678888887763               37888888899998887543211    12344555555432      23


Q ss_pred             hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc
Q 040749          500 IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE  579 (643)
Q Consensus       500 ~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~  579 (643)
                      ..+...|+.++.++...+    .+. ..++..|..++.+.++.++..|+..|..++....   .++. .....++..+.+
T Consensus       291 ~aV~~ea~~~i~~l~~~~----~l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~-~~~~~i~~~l~d  361 (618)
T 1w63_A          291 NAILYETVLTIMDIKSES----GLR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ-RHRSTIVDCLKD  361 (618)
T ss_dssp             HHHHHHHHHHHHHSCCCH----HHH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG-GGHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhcCCCH----HHH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH-HHHHHHHHHccC
Confidence            467788888888875432    222 2467888899988888999999999999876421   1222 356677888888


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          580 GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       580 ~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+..+|..|+.+|..++....  ...     +++.|...+.+.++..|..+...+..+..
T Consensus       362 ~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          362 LDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSCEPEFKADCASGIFLAAE  414 (618)
T ss_dssp             SCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            889999999999999987532  111     35667777777788888888887777764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.56  E-value=1e-06  Score=103.18  Aligned_cols=270  Identities=12%  Similarity=0.083  Sum_probs=180.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch---
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN---  437 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~---  437 (643)
                      ..++.+.+.+.+.+|..+..|+..+..++.... ..-.... ...+|.|+..+..+++.++..++++|..++..-..   
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcC
Confidence            456667777888899999999999999995432 2111111 24788999999989999999999999988752110   


Q ss_pred             -HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--chhhhhc--cCChHHHHHHhccCC--hhhHHHHHHHH
Q 040749          438 -KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--NKITIGL--SDGIPPLVDLLQNGT--IRGKKDAVTAL  510 (643)
Q Consensus       438 -k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~k~~i~~--~g~i~~Lv~lL~~~~--~~~~~~A~~aL  510 (643)
                       ...  -...++.++..+.+. +.++..|+++|.+++..-.  ....+..  ...++.|+.++.+.+  ..++..++.+|
T Consensus       448 ~~~~--~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al  524 (861)
T 2bpt_A          448 PQQH--LPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSAL  524 (861)
T ss_dssp             TTTT--HHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHH
T ss_pred             CHHH--HHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHH
Confidence             111  123577788888765 8999999999998874311  0111211  356778888887533  67889999999


Q ss_pred             HHhccCCcc-hHHHHHcCChHHHHHHhccC---------------ChhhHHHHHHHHHHHhCChhhHHHhh--cCCcHHH
Q 040749          511 FNLSLNQAN-KARAIDAGIVLPLMNLLEER---------------NLGMVDEALSILLLLATHPEGRHKIG--QLSFIET  572 (643)
Q Consensus       511 ~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~~---------------~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~  572 (643)
                      ..+...... ....+. .+++.+++.+...               ...++..++.+|.+++..-..  .+.  -...++.
T Consensus       525 ~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~l~~~  601 (861)
T 2bpt_A          525 TTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPS--SVEPVADMLMGL  601 (861)
T ss_dssp             HHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGG--GTGGGHHHHHHH
T ss_pred             HHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHH
Confidence            998764433 222222 3566677666531               234566788888888753211  111  1246777


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          573 LVEYIREGTP-KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       573 Lv~lL~~~s~-~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++..+...+. .+++.++.++..++...+....... ..+++.|...+.+.++.++..|..++..+.+
T Consensus       602 l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          602 FFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQVDSPVSITAVGFIADISN  668 (861)
T ss_dssp             HHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            8888887766 8899999998888764332222211 2378888888887888899999888876654

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.56  E-value=1.8e-06  Score=82.46  Aligned_cols=218  Identities=17%  Similarity=0.154  Sum_probs=165.7

Q ss_pred             hhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749          359 EQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN  437 (643)
Q Consensus       359 ~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~  437 (643)
                      ...+.+..++.+|...|+.++..|+..|..+.+.-+..-....-...+|.++.++++.|..+--.|+.+|..|-.+. -.
T Consensus        30 ~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           30 EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence            34568999999999999999999999999999875444444433458999999999999999999999999987743 33


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ...+..  .+..+..++++++.-.+.+|+..|..|......      .+.+..+.+++.+.+.+++..|++++.|++...
T Consensus       110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            444432  467888999999999999999999999433322      456788999998889999999999999999765


Q ss_pred             cchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH--------hcCChHHHHHHH
Q 040749          518 ANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI--------REGTPKNKECAT  589 (643)
Q Consensus       518 ~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL--------~~~s~~~~e~A~  589 (643)
                      ++..-  -.+++.-+-.+|++.++.+++.|+.+|..+.+.+=-      ...++.+.+++        ..|.|..+..|-
T Consensus       182 ~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~------~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~  253 (265)
T 3b2a_A          182 ADSGH--LTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL------ENVKIELLKISRIVDGLVYREGAPIIRLKAK  253 (265)
T ss_dssp             SSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC------SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHH
T ss_pred             CCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc------HhHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence            43221  134566678889899999999999999999886422      23333333333        246777777775


Q ss_pred             HHH
Q 040749          590 AVL  592 (643)
Q Consensus       590 ~~L  592 (643)
                      .+-
T Consensus       254 ~v~  256 (265)
T 3b2a_A          254 KVS  256 (265)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.51  E-value=1.2e-06  Score=102.80  Aligned_cols=274  Identities=10%  Similarity=0.048  Sum_probs=185.6

Q ss_pred             HHHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhH-HHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cc
Q 040749          361 KEEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENR-ILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ES  436 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~  436 (643)
                      ...++.+++.+.+.  +++++..|++.+..++..-..+- ........++.+...+..++.+++..++.+|..+... ..
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence            35577788888876  68899999999998774322110 0011112577778888888999999999999998763 22


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc----------------h--hhhhc---cCChHHHHHHh
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN----------------K--ITIGL---SDGIPPLVDLL  495 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~----------------k--~~i~~---~g~i~~Lv~lL  495 (643)
                      .-...+....++.++..+.+.++.++..|+..+..++.....                +  .....   ...++.++..+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l  330 (876)
T 1qgr_A          251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence            212222336788888888888889999999888888643100                0  00110   34566777777


Q ss_pred             cc-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh--hhHHHhhc
Q 040749          496 QN-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP--EGRHKIGQ  566 (643)
Q Consensus       496 ~~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~--~~~~~i~~  566 (643)
                      ..       .+...+..|+.+|..++..-..  .++ ..+++.+...+.+.++.++..|+.+|..++...  +...... 
T Consensus       331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-  406 (876)
T 1qgr_A          331 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-  406 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-
T ss_pred             hcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-
Confidence            52       3567888999999888753221  112 235566667777788999999999999998743  2222222 


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH--HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFI--LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~--~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ...++.++..+.+.++.+|..|+++|.+++...+...  ... -..+++.|+..+.+. ++++..|.++|..+.+.
T Consensus       407 ~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~  480 (876)
T 1qgr_A          407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence            3578889999998899999999999999987543211  000 124677788887764 89999999999887653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.48  E-value=2.8e-06  Score=99.57  Aligned_cols=273  Identities=15%  Similarity=0.087  Sum_probs=186.5

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC-
Q 040749          362 EEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID-  434 (643)
Q Consensus       362 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~-  434 (643)
                      ..++.+++.+.++  ++..+..++..+..++.....  ..+..  ...++.+...+..+  +..++..|+.+|.++... 
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4688999999988  899999999999999854211  11211  23567788888876  688999999999988752 


Q ss_pred             cch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          435 ESN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       435 ~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      ..+ .........++.+...+.+.+.+++..++.+|..+....... ........++.++..+.+.++.++..|+..+.+
T Consensus       206 ~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~  285 (876)
T 1qgr_A          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            111 001111125666777777778999999999999887532211 111123677888887777788899999988888


Q ss_pred             hccCCc---------------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749          513 LSLNQA---------------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKI  564 (643)
Q Consensus       513 Ls~~~~---------------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i  564 (643)
                      ++....                     +..+-.-..+++.++..+..       .+..++..|..+|..++..-.  ..+
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~  363 (876)
T 1qgr_A          286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGG
T ss_pred             HHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--Hhh
Confidence            874310                     01000013356677777752       345678888888888876322  122


Q ss_pred             hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .. .+++.+...+.+.++..|+.|+.+|..++.+.. ....... ..+++.|+..+.+.++.+|..|.++|..+...
T Consensus       364 ~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          364 VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            22 456666677777889999999999999987654 3332222 44789999999999999999999999988764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.45  E-value=3.8e-08  Score=88.06  Aligned_cols=57  Identities=23%  Similarity=0.462  Sum_probs=50.0

Q ss_pred             CCCccccccCcccccCc-------eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccH
Q 040749          271 IPHEFLCPITLEIMRDP-------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY  328 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dP-------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~  328 (643)
                      .++.+.||||++.+.+|       +.++|||+||..||.+|+... .+||.|+.++...++.|++
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~~~~~~~~~  132 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA-NTCPTCRKKINHKRYHPIY  132 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC-SBCTTTCCBCCGGGEEEEC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC-CCCCCCCCcCChhcceeee
Confidence            35678999999999988       888999999999999999875 5899999999888777653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=6.3e-08  Score=77.51  Aligned_cols=45  Identities=18%  Similarity=0.338  Sum_probs=39.9

Q ss_pred             CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .+++.||||++.+.+||+++|||+ ||..|+.++     ..||.|+.++..
T Consensus        23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   68 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   68 (75)
T ss_dssp             HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred             CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence            456889999999999999999999 999999653     579999998875

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.37  E-value=5.4e-06  Score=96.97  Aligned_cols=273  Identities=13%  Similarity=0.094  Sum_probs=183.7

Q ss_pred             HHHHHHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHH--HhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC-c
Q 040749          362 EEIVSLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILI--ADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID-E  435 (643)
Q Consensus       362 ~~i~~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i--~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~-~  435 (643)
                      ..++.|++.+.++ ++..+..|+..+..+++.-......+  .-...++.++..+.++  +..++..|+.+|.++... +
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~  213 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            5789999999988 89999999999998886432110000  0122466777777776  789999999999987531 1


Q ss_pred             ch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          436 SN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       436 ~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      .+ .........++.+...+.+++++++..++.+|..+......  ...+ ....++.+...+.+.+..++..|+.++..
T Consensus       214 ~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~~  292 (861)
T 2bpt_A          214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST  292 (861)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            11 00000122466667777788899999999999988753221  1111 11556667777778888999999999988


Q ss_pred             hccCCcc-----------------h-HHHHHcCChHHHHHHhccC-------ChhhHHHHHHHHHHHhCChhhHHHhhcC
Q 040749          513 LSLNQAN-----------------K-ARAIDAGIVLPLMNLLEER-------NLGMVDEALSILLLLATHPEGRHKIGQL  567 (643)
Q Consensus       513 Ls~~~~n-----------------~-~~lv~~G~v~~Lv~lL~~~-------~~~~~~~Al~~L~~La~~~~~~~~i~~~  567 (643)
                      ++.....                 . ...+ ..+++.++..+...       +..++..|..+|..++..-.  ..+. .
T Consensus       293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~-~  368 (861)
T 2bpt_A          293 ICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL-E  368 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH-H
T ss_pred             HHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH-H
Confidence            8754211                 0 1111 44677788877642       24577888889988876321  1111 1


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          568 SFIETLVEYIREGTPKNKECATAVLLELGANNS-SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .+++.+...+.+.+...|+.|+.+|..++.+.. ......+. .+++.|+..+.+.++.+|..|.++|..+...
T Consensus       369 ~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~  441 (861)
T 2bpt_A          369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADS  441 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence            345666666677788999999999999997643 33333322 4788999999999999999999988877653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.36  E-value=5.7e-07  Score=109.97  Aligned_cols=270  Identities=10%  Similarity=0.069  Sum_probs=186.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..+..++..+.+.+.+.|..|...|.+..+.+...-..-.....++.|++.|.+.++.+|..|+.+|.+++..-.. ..+
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~   84 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-YQV   84 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-HHH
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-HHH
Confidence            4688899999999999999999999887643311000001123577889999988999999999999999863222 111


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch------hhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhc
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK------ITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k------~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs  514 (643)
                        ...++.++..|.+++..+|..|+.+|..++..-...      ..-.....+|.|+..+. +.+...+..|+.+|..++
T Consensus        85 --~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~  162 (1230)
T 1u6g_C           85 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  162 (1230)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence              235677888888888888999999998876432111      00112467899999998 478899999999999987


Q ss_pred             cCCcc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-hHHHHHHHHHH
Q 040749          515 LNQAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-PKNKECATAVL  592 (643)
Q Consensus       515 ~~~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-~~~~e~A~~~L  592 (643)
                      ...+. -.. .-..+++.|+..|.+++..++..|+.+|..++......  +. ...++.++..+...+ +..+..++.++
T Consensus       163 ~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l  238 (1230)
T 1u6g_C          163 SRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCI  238 (1230)
T ss_dssp             HHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHH
T ss_pred             HHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHH
Confidence            42111 000 01235566777777788899999999999998753221  22 346888888887543 45677788888


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ..++...+..... .-..+++.++..+.+.++.+|+.|..++..+.+
T Consensus       239 ~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~  284 (1230)
T 1u6g_C          239 AAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVR  284 (1230)
T ss_dssp             HHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8887654332111 014689999999988889999999988887765

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.36  E-value=7.7e-08  Score=80.67  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             CccccccCcccccCceec---CCCCccchHHHHHHHhc----C---CCCCCC--cCcc--ccc
Q 040749          273 HEFLCPITLEIMRDPVII---ASGQTFERESVQKWFDS----N---HRTCPK--TRQT--LAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~---~cg~ty~r~~I~~~~~~----~---~~~cP~--~~~~--l~~  321 (643)
                      +.|.||||++.+.+|+++   +|||.||+.|+.+|+..    +   ...||.  |+..  ++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~   66 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQE   66 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCH
Confidence            468999999999999765   69999999999999973    2   247999  9887  554

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.36  E-value=2.1e-07  Score=75.56  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=40.2

Q ss_pred             CccccccCcccccC--------------ceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccC
Q 040749          273 HEFLCPITLEIMRD--------------PVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHL  322 (643)
Q Consensus       273 ~~f~CpIc~~~m~d--------------Pv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~  322 (643)
                      ++-.|+||++.|.+              ++.+ +|||.|+..||.+|+... .+||.|++++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN-NRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC-CBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC-CCCCCcCCCcchh
Confidence            45679999999977              4455 599999999999999875 5899999987643

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.35  E-value=9.3e-07  Score=95.40  Aligned_cols=266  Identities=11%  Similarity=0.097  Sum_probs=178.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcc-h-HH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDES-N-KR  439 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~-~-k~  439 (643)
                      +..++..+.+++.+.|.+|-..|..+.+.+        ..+++..|+.++.+.  +..+|..|+..|.|+..... . ..
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~--------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~   74 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN--------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKA   74 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC--------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHH
Confidence            456677777889999999999998876421        123566777777654  67899999999999864321 0 00


Q ss_pred             H-------H---HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC--ChhhHHHHH
Q 040749          440 L-------I---AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG--TIRGKKDAV  507 (643)
Q Consensus       440 ~-------i---~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~--~~~~~~~A~  507 (643)
                      .       +   .....-..|+..|.+.+..+ ..++.++..++..+....  .-.+.++.|+..+.++  ++..+..|+
T Consensus        75 ~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~--~w~~ll~~L~~~l~~~~~~~~~r~~al  151 (462)
T 1ibr_B           75 QYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTL  151 (462)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc--ccHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            0       0   01122345677777776667 778888888875432210  1267899999999888  889999999


Q ss_pred             HHHHHhccCC-cchHHHHHcCChHHHHHHhccC--ChhhHHHHHHHHHHHhCChh-hHH-HhhcCCcHHHHHHHHhcCCh
Q 040749          508 TALFNLSLNQ-ANKARAIDAGIVLPLMNLLEER--NLGMVDEALSILLLLATHPE-GRH-KIGQLSFIETLVEYIREGTP  582 (643)
Q Consensus       508 ~aL~nLs~~~-~n~~~lv~~G~v~~Lv~lL~~~--~~~~~~~Al~~L~~La~~~~-~~~-~i~~~g~i~~Lv~lL~~~s~  582 (643)
                      .+|..++..- .....-.-..+++.++..+.+.  +..++..|+.++.++...-+ .-. .....-.++.+...+.+.++
T Consensus       152 ~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  231 (462)
T 1ibr_B          152 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  231 (462)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCH
Confidence            9999998532 1110001123677788888776  68899999999998765321 100 00111135556666667788


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          583 KNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       583 ~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .++..++.+|..++...+......+..++++.++..+.+.++.++..|...+..+.+.
T Consensus       232 ~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~  289 (462)
T 1ibr_B          232 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE  289 (462)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence            9999999999999876554322222226788888888888999999999988877653

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.31  E-value=2.8e-07  Score=71.18  Aligned_cols=49  Identities=20%  Similarity=0.262  Sum_probs=42.9

Q ss_pred             CCccccccCcccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPVII--ASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~--~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      +++..|+||++...|++++  ||||. ||..|+.+|+..+ ..||.|++++..
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~   57 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRN-KPCPVCRQPIQM   57 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTT-CCCTTTCCCCCE
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcC-CcCCCcCcchhc
Confidence            4567899999999999988  99999 8999999999754 579999998764

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.31  E-value=2.5e-07  Score=71.25  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CccccccCcccccCceec--CCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          273 HEFLCPITLEIMRDPVII--ASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~--~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .+..|+||++...|++++  ||||. ||..|+.+|+..+ ..||.|++++..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CPiCR~~i~~   56 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAG-ASCPICKKEIQL   56 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTT-CBCTTTCCBCCE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhC-CcCCCcCchhhc
Confidence            356799999999999988  99998 9999999999765 589999998764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.22  E-value=8.8e-06  Score=80.35  Aligned_cols=184  Identities=13%  Similarity=0.054  Sum_probs=136.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCCcchHHHHH
Q 040749          448 PAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQANKARAID  525 (643)
Q Consensus       448 ~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~~n~~~lv~  525 (643)
                      +.+.+.+.+.++..|..|+..|..+... +.....- -...++.|..++. +.+..++..|+.+|..|+..-.....-.-
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~-~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~   96 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGE-YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA   96 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC-CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCC-HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4577888889999999999999988754 2211100 1355778888884 88999999999999999853221111112


Q ss_pred             cCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHH-H
Q 040749          526 AGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN-NSSF-I  603 (643)
Q Consensus       526 ~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~-~~~~-~  603 (643)
                      ..+++.|+..+.+.+..+++.|..+|..++.....      ..+++.+...+.+.++.+|..++..|..+... ++.. .
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~  170 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALN  170 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCcc
Confidence            34788999999998999999999999999875321      13577888888888999999999999996443 3431 1


Q ss_pred             HHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          604 LAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       604 ~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ...+ ..+++.|+.++.+.++++|..|..++..+..
T Consensus       171 ~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          171 KKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            1222 2579999999999999999999999988764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.19  E-value=1.1e-06  Score=75.04  Aligned_cols=46  Identities=15%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             ccccccCcccccCc------------------eecCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          274 EFLCPITLEIMRDP------------------VIIASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       274 ~f~CpIc~~~m~dP------------------v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +-.|+||++.|.+|                  +.++|||.|+..||.+|+.. +.+||.|++...
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            46799999999876                  34689999999999999986 568999998754

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.18  E-value=7.9e-06  Score=99.86  Aligned_cols=231  Identities=10%  Similarity=0.090  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchH--
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNK--  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k--  438 (643)
                      ...++.+++.|.+.++.+|..|+..|..++..-+.  ..+  ...++.|+..|.++++.+|..|+.+|..++..-...  
T Consensus        47 ~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           47 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            46788899999999999999999999999864433  111  235778888888888899999999998887521111  


Q ss_pred             ----HHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749          439 ----RLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNL  513 (643)
Q Consensus       439 ----~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  513 (643)
                          ..-.....+|.|+..+. ++++..+..|+.+|..++........-.-...++.|+..|.+.+..++..|+.+|..+
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l  202 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHL  202 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence                11113457889999998 5789999999999999874211100001134667777778888889999999999999


Q ss_pred             ccCCcchHHHHHcCChHHHHHHhccC-ChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcCChHHHHHHHH
Q 040749          514 SLNQANKARAIDAGIVLPLMNLLEER-NLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREGTPKNKECATA  590 (643)
Q Consensus       514 s~~~~n~~~lv~~G~v~~Lv~lL~~~-~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~~e~A~~  590 (643)
                      +...+..  + -...++.|+..|... +...+..++.++..++.....  .+..  ...++.++..+.+.++.+|+.|+.
T Consensus       203 ~~~~~~~--~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~  277 (1230)
T 1u6g_C          203 VMSCGNI--V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCIQ  277 (1230)
T ss_dssp             TTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHHH
T ss_pred             HHhcCHH--H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            8654432  1 234578888888653 235566677777777653211  2221  467899999998888999999999


Q ss_pred             HHHHHhcCCH
Q 040749          591 VLLELGANNS  600 (643)
Q Consensus       591 ~L~~L~~~~~  600 (643)
                      ++..++...+
T Consensus       278 ~l~~l~~~~~  287 (1230)
T 1u6g_C          278 AFESFVRRCP  287 (1230)
T ss_dssp             HHHHHHHCTT
T ss_pred             HHHHHHHHCh
Confidence            9988887544

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.17  E-value=6.1e-05  Score=85.04  Aligned_cols=254  Identities=12%  Similarity=0.109  Sum_probs=174.0

Q ss_pred             HHHHHHHHHh--cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          362 EEIVSLVEQL--SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       362 ~~i~~Lv~~L--~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      ..++.+.+.|  .+.++.++..|+.++..+.+.+|+.-   ...+.++.|..+|...|+.++.+|+.+|..++.++..  
T Consensus       146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--  220 (621)
T 2vgl_A          146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--  220 (621)
T ss_dssp             HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--
Confidence            4566777888  78899999999999999997766532   2247899999999988999999999999998864321  


Q ss_pred             HHHhcCChHHHHHHhc----CC-------------CHHHHHHHHHHHHhccccc--cchhhhhccCChHHHHHHhc----
Q 040749          440 LIAQQGAIPAIIEILQ----SG-------------STEARENSAAALFSLSMLD--ENKITIGLSDGIPPLVDLLQ----  496 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~----~~-------------~~e~~~~Aa~~L~~Ls~~~--~~k~~i~~~g~i~~Lv~lL~----  496 (643)
                      .+  ...++.+++.|.    .+             ++..+.....+|..+...+  +.+..+.  +.+..++..+.    
T Consensus       221 ~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~--~~L~~il~~~~~~~k  296 (621)
T 2vgl_A          221 EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT--ECLETILNKAQEPPK  296 (621)
T ss_dssp             HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH--HHHHHHHHHHHSCCS
T ss_pred             HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH--HHHHHHHHhhccCcc
Confidence            11  123444444332    22             5788888888888887532  2222221  23333433221    


Q ss_pred             -----cCC--hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCc
Q 040749          497 -----NGT--IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSF  569 (643)
Q Consensus       497 -----~~~--~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~  569 (643)
                           +.+  ..+...|+.++..+...++    ++. .++..|..+|.+.+++++-.|+..|..++........+ . ..
T Consensus       297 s~~l~~~n~~~aVl~ea~~~i~~l~~~~~----~~~-~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~-~-~~  369 (621)
T 2vgl_A          297 SKKVQHSNAKNAVLFEAISLIIHHDSEPN----LLV-RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAV-K-TH  369 (621)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHCCCHH----HHH-HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHH-H-TT
T ss_pred             cccccccchHHHHHHHHHHHHHhcCCcHH----HHH-HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHH-H-HH
Confidence                 112  2677788888888863222    111 35678889998888999999999999998754222222 2 35


Q ss_pred             HHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          570 IETLVEYIR-EGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       570 i~~Lv~lL~-~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ...++..+. +.++.++..|+.+|..++..  .+...     ++..|...+.+.+...++.+...+..+.
T Consensus       370 ~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          370 IETVINALKTERDVSVRQRAVDLLYAMCDR--SNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--HHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCHhHHHHHHHHHHHHcCh--hhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            677888888 88899999999999999843  34333     4556777777777777777776666554

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.16  E-value=3.1e-07  Score=74.10  Aligned_cols=46  Identities=20%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCcccccC
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAHL  322 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~~  322 (643)
                      .++..|+||++.+.+||.+||||. ||..|+.+|.     .||.|+.++...
T Consensus        16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~   62 (79)
T 2yho_A           16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV   62 (79)
T ss_dssp             HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred             CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence            345789999999999999999999 9999998873     799999988753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.16  E-value=3.9e-06  Score=82.90  Aligned_cols=182  Identities=13%  Similarity=0.134  Sum_probs=136.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhH-HHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcCCcc-hHHHHH
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENR-ILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSIDES-NKRLIA  442 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~~~~-~k~~i~  442 (643)
                      .+.+.+.+.+|..|..|+..|..+....+..- ..+  ...++.|...|. ..+..++..|+.+|..|+..-. .-... 
T Consensus        19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~-   95 (242)
T 2qk2_A           19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY-   95 (242)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH-
T ss_pred             HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH-
Confidence            47788899999999999999999986533210 000  124667788884 8899999999999999985311 11111 


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC-Ccc--
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN-QAN--  519 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~-~~n--  519 (643)
                      -...++.|+..+.+.+..+|..|..+|..+......      ...++.+...+++.++.++..++.+|..+... ...  
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~  169 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTAL  169 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCc
Confidence            234789999999999999999999999998754321      24678888899999999999999999996433 221  


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      -...+ ..+++.|+.++.+.++.++..|..++..++..
T Consensus       170 ~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~  206 (242)
T 2qk2_A          170 NKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL  206 (242)
T ss_dssp             CHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence            12222 25789999999999999999999999998763

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.10  E-value=5.9e-07  Score=93.09  Aligned_cols=46  Identities=22%  Similarity=0.407  Sum_probs=41.9

Q ss_pred             CCCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          271 IPHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      +.+++.||||++.+.+||.+||||+ ||+.|+.+|     ..||.|+.++..
T Consensus       292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            4567999999999999999999999 999999988     579999998764

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.08  E-value=6.7e-07  Score=79.62  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=92.7

Q ss_pred             cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749          403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI  482 (643)
Q Consensus       403 ~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i  482 (643)
                      ...++.|+.+|.++++.++..|+.+|.++..           ..++.|+.+|++.++.+|..|+++|.++..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            3578889999999999999999888876642           136899999999999999999999988752        


Q ss_pred             hccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          483 GLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLL  553 (643)
Q Consensus       483 ~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~  553 (643)
                        ..+++.|+.+|.+.++.++..|+.+|.++..          ..+++.|..++.++++.++..|+.+|..
T Consensus        72 --~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 --ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             --HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence              3568999999999999999999999998862          2357889999988888899988888754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.07  E-value=0.0001  Score=70.60  Aligned_cols=220  Identities=14%  Similarity=0.086  Sum_probs=159.0

Q ss_pred             CcHHHHHhCCCCChHHHHHHHHHHHHhcCCc--chHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhh
Q 040749          405 AIPPLVQLLPYPDSKILEHAVTAVLNLSIDE--SNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKIT  481 (643)
Q Consensus       405 ~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~--~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~  481 (643)
                      .+..|..+|...|+.++.+|+.+|.++-+.-  .-+..+ -...++.++.++++.+..+.-.|+.+|..|-.... ....
T Consensus        34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~-~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMV-LERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHH-HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            5667889999999999999999999998752  223333 34579999999999999999999999998864422 2222


Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR  561 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  561 (643)
                      +  .-.+.+|.+++.++++-....|+..+..|......+      +++..+..++.+.+..++..++.+|.+++...+..
T Consensus       113 y--~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~------~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~  184 (265)
T 3b2a_A          113 F--LKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK------LVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADS  184 (265)
T ss_dssp             H--HHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH------HHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSC
T ss_pred             H--HHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH------HHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCH
Confidence            2  235688899999999999999999999884333222      24567788888899999999999999998844322


Q ss_pred             HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-H-HHHHHHHCCcHHHHHHHh-hcCCHHHHHHHHHHHHHH
Q 040749          562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS-S-FILAALQYGVYEHLIQLT-EGGTSRAQRKANALLQLI  637 (643)
Q Consensus       562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~-~-~~~~~~~~g~i~~L~~ll-~~g~~~~k~~A~~lL~~L  637 (643)
                      ..+  ..++.-+-.+|.+.++..++.|+.+|..+.+..- + ....+  .++....-.+. ..|.|..+.+|..+-..+
T Consensus       185 ~i~--~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~--~~~~~~v~~l~~~~~~~~~~~ka~~v~~~l  259 (265)
T 3b2a_A          185 GHL--TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL--LKISRIVDGLVYREGAPIIRLKAKKVSDLI  259 (265)
T ss_dssp             CCG--GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH--HHHHHHHHHGGGCSSCHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH--HHHHHHHHHHHHhcCChhHHHHHHHHHHHH
Confidence            211  2456667788999999999999999999876521 1 11111  11122222344 578999999998765554

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.04  E-value=3.7e-06  Score=65.60  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=40.0

Q ss_pred             CCccccccCcccccCceecCCCCc-cchHHHHHHHhcCCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDPVIIASGQT-FERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dPv~~~cg~t-y~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .++..|+||++...++|.+||||. ||..|+..     ...||.|++++..
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            456889999999999999999999 99999984     3589999998765

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.02  E-value=0.00014  Score=82.17  Aligned_cols=262  Identities=16%  Similarity=0.167  Sum_probs=166.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      .....++.+.+.+...++-+--.+..+++.+++.-..     ++..+.+=|.++++.++..|+.+|+++...     .+.
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~~-----e~~  144 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIKNDLASRNPTFMGLALHCIANVGSR-----EMA  144 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCCH-----HHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCCH-----HHH
Confidence            3566778888999998888888888888766643322     345666777788999999999999999641     132


Q ss_pred             hcCChHHHHHHh--cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          443 QQGAIPAIIEIL--QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       443 ~~g~i~~Lv~lL--~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                       ...++.+.+.|  .+.++.+|..|+-++..+...+.  ..+-..+.++.+..+|.+.++.++..|+.+|..++...+..
T Consensus       145 -~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~  221 (621)
T 2vgl_A          145 -EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE  221 (621)
T ss_dssp             -HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH
T ss_pred             -HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH
Confidence             34678889999  78899999999999999875322  22222589999999999889999999999999987644221


Q ss_pred             -----H-------HHHHcCCh----------------HHHHHHhcc----CChhhHHHHHHHHHHHhC----Ch-----h
Q 040749          521 -----A-------RAIDAGIV----------------LPLMNLLEE----RNLGMVDEALSILLLLAT----HP-----E  559 (643)
Q Consensus       521 -----~-------~lv~~G~v----------------~~Lv~lL~~----~~~~~~~~Al~~L~~La~----~~-----~  559 (643)
                           .       .++..+-.                -.++++|..    ++++..+....+|..+..    .+     .
T Consensus       222 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~  301 (621)
T 2vgl_A          222 FKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQ  301 (621)
T ss_dssp             HTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCccccccc
Confidence                 0       11111111                012222221    122222222222222110    00     0


Q ss_pred             hHH---H--------hh--------cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhh
Q 040749          560 GRH---K--------IG--------QLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTE  620 (643)
Q Consensus       560 ~~~---~--------i~--------~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~  620 (643)
                      .+.   .        +.        -..++..|..++.+.++..|..|+..|..++...+..  .++ ......++..+.
T Consensus       302 ~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~~-~~~~~~i~~~L~  378 (621)
T 2vgl_A          302 HSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EAV-KTHIETVINALK  378 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HHH-HTTHHHHHHHHT
T ss_pred             ccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HHH-HHHHHHHHHHhc
Confidence            000   0        00        0124555666666667788888888888887665421  112 234667777777


Q ss_pred             -cCCHHHHHHHHHHHHHHHhh
Q 040749          621 -GGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       621 -~g~~~~k~~A~~lL~~L~~~  640 (643)
                       +.+..+|.+|..+|..+.+.
T Consensus       379 ~d~d~~Ir~~aL~lL~~l~~~  399 (621)
T 2vgl_A          379 TERDVSVRQRAVDLLYAMCDR  399 (621)
T ss_dssp             TCCCHHHHHHHHHHHHHHCCH
T ss_pred             cCCCHhHHHHHHHHHHHHcCh
Confidence             88999999999998877643

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.00  E-value=6.2e-06  Score=66.45  Aligned_cols=52  Identities=17%  Similarity=0.319  Sum_probs=42.9

Q ss_pred             CCCccccccCcccc--cCceecCCC-----CccchHHHHHHHhcC-CCCCCCcCcccccC
Q 040749          271 IPHEFLCPITLEIM--RDPVIIASG-----QTFERESVQKWFDSN-HRTCPKTRQTLAHL  322 (643)
Q Consensus       271 ~~~~f~CpIc~~~m--~dPv~~~cg-----~ty~r~~I~~~~~~~-~~~cP~~~~~l~~~  322 (643)
                      ..++..|+||++-+  .+|+++||+     |.|...||.+|+... ..+||.|+..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            34567899999877  478989996     999999999999964 46899999987643

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.99  E-value=5.3e-07  Score=80.31  Aligned_cols=120  Identities=20%  Similarity=0.209  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      ...++.++..|.+.++.++..|++.|..+..            ..++.|+.+|.++++.++..|+++|.++..       
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD-------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-------
Confidence            3567889999999999999988888776541            136999999999999999999999998862       


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                         ..+++.|+..|+++++.+|..|+++|..+.          ...+++.|+.++++.+..++..|+.+|.+
T Consensus        72 ---~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---ERAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence               235899999999999999999999999874          34578999999998899999999988764

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.93  E-value=0.00019  Score=76.42  Aligned_cols=263  Identities=13%  Similarity=0.119  Sum_probs=169.5

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcH--HHHHhCCC-CChHHHHHHHHHHHHhcCCcchHHHHHhcC--Ch
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP--PLVQLLPY-PDSKILEHAVTAVLNLSIDESNKRLIAQQG--AI  447 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g--~i  447 (643)
                      .+++-.+..+...+..+++.++.....+-  ..+.  .++..|.+ .+...+.-++.+|..|...++.|..+.+.+  .+
T Consensus       136 ~dd~~~ll~a~~l~~ll~~~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~  213 (480)
T 1ho8_A          136 GDFQTVLISGFNVVSLLVQNGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFM  213 (480)
T ss_dssp             SSHHHHHHHHHHHHHHHTSTTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhccCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchh
Confidence            34444555666665555533322111110  0111  44555554 245567778999999999999999887543  46


Q ss_pred             HHHHHHhcC---------------C--CHHHHHHHHHHHHhccccccchhhhhccCCh--HHHHHHhccC-ChhhHHHHH
Q 040749          448 PAIIEILQS---------------G--STEARENSAAALFSLSMLDENKITIGLSDGI--PPLVDLLQNG-TIRGKKDAV  507 (643)
Q Consensus       448 ~~Lv~lL~~---------------~--~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~~~~~~A~  507 (643)
                      ++++.+++.               +  ...++.+++-++|-||..++....+...+..  +.|+..++.. ...+.+-++
T Consensus       214 ~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~l  293 (480)
T 1ho8_A          214 PTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCI  293 (480)
T ss_dssp             HHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHH
Confidence            677654431               1  2567889999999999988766666655533  6777777654 578889999


Q ss_pred             HHHHHhccCCc-ch----HHHH-HcCChHHHHHHhcc---CChhhHHHHHHHHHHH-------hC---------------
Q 040749          508 TALFNLSLNQA-NK----ARAI-DAGIVLPLMNLLEE---RNLGMVDEALSILLLL-------AT---------------  556 (643)
Q Consensus       508 ~aL~nLs~~~~-n~----~~lv-~~G~v~~Lv~lL~~---~~~~~~~~Al~~L~~L-------a~---------------  556 (643)
                      .+|.||..... +.    ..++ ..++ +++++.|..   .|+++.+..-.+...|       ++               
T Consensus       294 a~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~W  372 (480)
T 1ho8_A          294 SIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCW  372 (480)
T ss_dssp             HHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCccc
Confidence            99999987542 21    2233 2344 556666655   6777765543333322       11               


Q ss_pred             ChhhH---------HHhhcC--CcHHHHHHHHhc----------CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHH
Q 040749          557 HPEGR---------HKIGQL--SFIETLVEYIRE----------GTPKNKECATAVLLELGANNSSFILAALQYGVYEHL  615 (643)
Q Consensus       557 ~~~~~---------~~i~~~--g~i~~Lv~lL~~----------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L  615 (643)
                      +|-.+         ..+.+.  ..+..|+++|.+          .++.+..-|+.=+..++++.|..+..+-+.|+=..+
T Consensus       373 SP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~V  452 (480)
T 1ho8_A          373 SPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADI  452 (480)
T ss_dssp             CGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHH
T ss_pred             CCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHH
Confidence            12121         123232  357889999974          235556666666888998888888877788999999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHHH
Q 040749          616 IQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       616 ~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ++++.+.++++|..|..+++.+-
T Consensus       453 M~Lm~h~d~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          453 MELLNHSDSRVKYEALKATQAII  475 (480)
T ss_dssp             HHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999888653

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.88  E-value=2.5e-05  Score=77.67  Aligned_cols=188  Identities=9%  Similarity=0.105  Sum_probs=133.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-hhccCchhHHHHHh-cCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCc---chHHH
Q 040749          367 LVEQLSSSKLEVQKEAVRKIRL-LSKENPENRILIAD-CGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDE---SNKRL  440 (643)
Q Consensus       367 Lv~~L~s~~~~~~~~A~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~---~~k~~  440 (643)
                      +-+.+.|.+|..|..|+..|.. +....+.......+ ...+..|.+.+ +..+..++..|+.+|..++..-   .....
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            5667789999999999999999 87443321100001 12466777788 6778999999999999998521   11101


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh-h-ccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI-G-LSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA  518 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i-~-~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  518 (643)
                      .. .-.++.++..+.+....++..+..+|-.+...-.. ... . -...++.|+..|++.++.++..++.+|..+.....
T Consensus       101 y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~  178 (249)
T 2qk1_A          101 YV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEK  178 (249)
T ss_dssp             HH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC
T ss_pred             HH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC
Confidence            21 23688999999888888988888888887643211 111 0 12467888888999999999999999998875443


Q ss_pred             ch-HH---HHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          519 NK-AR---AIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       519 n~-~~---lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                      .. ..   .+...++|.|.+++.+.++.++..|..+|..++.
T Consensus       179 ~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          179 DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            21 22   2235789999999999999999999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.87  E-value=8.9e-05  Score=73.64  Aligned_cols=189  Identities=12%  Similarity=0.108  Sum_probs=135.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHh-cccc-ccchhhhhc-cCChHHHHHHh-ccCChhhHHHHHHHHHHhccCC---cch-
Q 040749          449 AIIEILQSGSTEARENSAAALFS-LSML-DENKITIGL-SDGIPPLVDLL-QNGTIRGKKDAVTALFNLSLNQ---ANK-  520 (643)
Q Consensus       449 ~Lv~lL~~~~~e~~~~Aa~~L~~-Ls~~-~~~k~~i~~-~g~i~~Lv~lL-~~~~~~~~~~A~~aL~nLs~~~---~n~-  520 (643)
                      .+...+.+.++.-|..|+..|.. +... ++....-.. ...+..|...+ ++.+..++..|+.+|..|+..-   ... 
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            34567788899999999999999 8642 221110122 34577788888 6778889999999999998522   211 


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhh--cCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIG--QLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~--~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      ...  .-+++.+++.+.+....+++.+..+|..++.+-+- ....  -..+++.|+..|.+.++.+|+.++..|..++..
T Consensus       100 ~y~--~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYV--SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            221  22688899999888888999988888888763211 1111  113677888888888999999999999998865


Q ss_pred             CH---HHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          599 NS---SFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       599 ~~---~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .+   ......+...+++.|..++.+.++.+|..|..+|..+.+.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~  221 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI  221 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            54   2222333367999999999999999999999999887653

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.83  E-value=0.00017  Score=73.18  Aligned_cols=149  Identities=11%  Similarity=0.035  Sum_probs=123.2

Q ss_pred             HHHHHHhccCChhhHHHHHHHHHH-hccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc-
Q 040749          489 PPLVDLLQNGTIRGKKDAVTALFN-LSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ-  566 (643)
Q Consensus       489 ~~Lv~lL~~~~~~~~~~A~~aL~n-Ls~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-  566 (643)
                      ..++.-|.+++.+.++.++.-|.. +.....-...++..+++..|+.+....+.+.+..++.+|.+|-.+..|...+++ 
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~  200 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAH  200 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHC
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCC
Confidence            344555667788888888888887 566777889999999999999999989999999999999999999999988875 


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH--------C--CcHHHHHHHhh---cCCHHHHHHHHHH
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ--------Y--GVYEHLIQLTE---GGTSRAQRKANAL  633 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~--------~--g~i~~L~~ll~---~g~~~~k~~A~~l  633 (643)
                      ..+|..+..++.+....+...|+++|..+|.+++.....+.+        .  -..+.|+.++.   +++..++.+|..+
T Consensus       201 ~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtL  280 (339)
T 3dad_A          201 SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTL  280 (339)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHH
Confidence            468999999999878889999999999999887644433322        1  23779999997   7899999999999


Q ss_pred             HHHH
Q 040749          634 LQLI  637 (643)
Q Consensus       634 L~~L  637 (643)
                      +..+
T Consensus       281 IN~l  284 (339)
T 3dad_A          281 INKT  284 (339)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8855

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=97.79  E-value=3.2e-06  Score=73.14  Aligned_cols=46  Identities=15%  Similarity=0.376  Sum_probs=0.4

Q ss_pred             ccccccCcccccCce-----------------e-cCCCCccchHHHHHHHhcCCCCCCCcCcccc
Q 040749          274 EFLCPITLEIMRDPV-----------------I-IASGQTFERESVQKWFDSNHRTCPKTRQTLA  320 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv-----------------~-~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~  320 (643)
                      +-.|+||++.|.+|.                 + .+|||.|+..||.+|+.. +.+||.|+.+..
T Consensus        48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             C----------------------------------------------------------------
T ss_pred             CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            357999999998753                 2 489999999999999987 468999998754

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.66  E-value=0.00068  Score=68.89  Aligned_cols=178  Identities=12%  Similarity=0.045  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRL  440 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~  440 (643)
                      .-.+..++..|.+++....+.++..|+.+...+.+.-..++..+|+..|++.....+..++..++++|.+|-.+..+...
T Consensus       117 s~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~g  196 (339)
T 3dad_A          117 SVRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLG  196 (339)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccc
Confidence            35688889999998999999999999995557788889999999999999999999999999999999999999888877


Q ss_pred             HH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhc--------c--CChHHHHHHhc---cCChhhHHH
Q 040749          441 IA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGL--------S--DGIPPLVDLLQ---NGTIRGKKD  505 (643)
Q Consensus       441 i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~--------~--g~i~~Lv~lL~---~~~~~~~~~  505 (643)
                      ++ ....|..+..++.+....+.+.|..+|..+....+ +...+..        .  -.++.|+.+|+   +++.+.+.+
T Consensus       197 vvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~  276 (339)
T 3dad_A          197 VVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVY  276 (339)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHH
T ss_pred             hhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHH
Confidence            76 55688999999998888999999999999876554 3222211        1  24789999997   678889998


Q ss_pred             HHHHHHHhccCCcc---hHHHH----HcCChHHHHHHhcc
Q 040749          506 AVTALFNLSLNQAN---KARAI----DAGIVLPLMNLLEE  538 (643)
Q Consensus       506 A~~aL~nLs~~~~n---~~~lv----~~G~v~~Lv~lL~~  538 (643)
                      |...|-.+....+.   +..++    +.|+-..+..++..
T Consensus       277 amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~  316 (339)
T 3dad_A          277 TVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGT  316 (339)
T ss_dssp             HHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSC
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhc
Confidence            88777665443222   22333    24444445555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.51  E-value=0.0069  Score=70.10  Aligned_cols=234  Identities=12%  Similarity=0.047  Sum_probs=157.6

Q ss_pred             HHHHHHHHhcCCC--------HHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC
Q 040749          363 EIVSLVEQLSSSK--------LEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID  434 (643)
Q Consensus       363 ~i~~Lv~~L~s~~--------~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~  434 (643)
                      .+..|...|.+.+        +.++..|+..|+...-.+..       ..+++.|..+|..++..+++.|+.+|+-+-..
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-------eev~e~L~~~L~dd~~~~~~~AalALGli~vG  502 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-------IEVYEALKEVLYNDSATSGEAAALGMGLCMLG  502 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-------HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcc
Confidence            4566666676544        55677777777775432211       11466778888777776777777777766433


Q ss_pred             cchHHHHHhcCChHHHHHHh-cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-CChhhHHHHHHHHHH
Q 040749          435 ESNKRLIAQQGAIPAIIEIL-QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-GTIRGKKDAVTALFN  512 (643)
Q Consensus       435 ~~~k~~i~~~g~i~~Lv~lL-~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~n  512 (643)
                      ..|..      ++..|+..+ ...+..++..++-.|..+..        ++...++.+++.|.. .++-++..|+.++.-
T Consensus       503 Tgn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~--------g~~e~~~~li~~L~~~~dp~vRygaa~algl  568 (963)
T 4ady_A          503 TGKPE------AIHDMFTYSQETQHGNITRGLAVGLALINY--------GRQELADDLITKMLASDESLLRYGGAFTIAL  568 (963)
T ss_dssp             CCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCGGGGHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             cCCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhC--------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            33322      234555544 34467788888888876643        456678999998875 567778777777765


Q ss_pred             hccCCcchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHH-hcCChHHHHHHHH
Q 040749          513 LSLNQANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYI-REGTPKNKECATA  590 (643)
Q Consensus       513 Ls~~~~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL-~~~s~~~~e~A~~  590 (643)
                      -.....|..      +|+.|+..+. +.+..++..|+..|+.++...        ...++.++.++ ++.++.+|..|+.
T Consensus       569 AyaGTGn~~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~--------~e~v~rlv~~L~~~~d~~VR~gAal  634 (963)
T 4ady_A          569 AYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD--------YTTVPRIVQLLSKSHNAHVRCGTAF  634 (963)
T ss_dssp             HTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS--------CSSHHHHTTTGGGCSCHHHHHHHHH
T ss_pred             HhcCCCCHH------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCC--------HHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            555555543      3555666654 467788888998888876533        13466666644 5688999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          591 VLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       591 ~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      +|..+|.+++.       ..++..|..++.+.++.+++.|...|..+-
T Consensus       635 ALGli~aGn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          635 ALGIACAGKGL-------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             HHHHHTSSSCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             HHHHhccCCCc-------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            99999877652       135677788888888888888887777653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.49  E-value=0.001  Score=69.09  Aligned_cols=266  Identities=11%  Similarity=0.024  Sum_probs=143.7

Q ss_pred             CCccHHHHHHHHHHHHhccccCCCCCCCCcchhchhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc
Q 040749          324 IAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC  403 (643)
Q Consensus       324 l~pn~~l~~~i~~~~~~~~~~~p~~~~~~~~~~s~~~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~  403 (643)
                      ..+|..+|.++=-+.....-. |.   .        --..+..+.+.++++++-++-.|++.|..+..  ++.-..    
T Consensus        78 ~s~d~~lKrLvYLyl~~~~~~-~~---e--------~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~----  139 (355)
T 3tjz_B           78 QSNDPTLRRMCYLTIKEMSCI-AE---D--------VIIVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA----  139 (355)
T ss_dssp             GCCCHHHHHHHHHHHHHHTTT-SS---C--------GGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH----
T ss_pred             cCCCHHHHHHHHHHHHHhCCC-HH---H--------HHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH----
Confidence            356788888875544432111 10   0        12457788899999999999999999999973  332222    


Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG  483 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~  483 (643)
                       ..+.+.+.|.+.++.++..|+-+...|....  .+.+  .+.++.+-+++.+.++-+..+|.++|..+...+.      
T Consensus       140 -l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~------  208 (355)
T 3tjz_B          140 -IERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR------  208 (355)
T ss_dssp             -HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH------
T ss_pred             -HHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch------
Confidence             3456778888999999999999999887543  2222  3689999999999999999999999999976431      


Q ss_pred             ccCChHHHHHHhccCC---hhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhh
Q 040749          484 LSDGIPPLVDLLQNGT---IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEG  560 (643)
Q Consensus       484 ~~g~i~~Lv~lL~~~~---~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~  560 (643)
                        .++..|+..+..+.   +-++..-++.+..+...++   .-.....++.+...|++.++.+.-+|+.++..+...+..
T Consensus       209 --~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~---~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~  283 (355)
T 3tjz_B          209 --LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDED---GSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK  283 (355)
T ss_dssp             --HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-------
T ss_pred             --HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccc---hhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH
Confidence              14555666665542   2222222222222222210   012234556666777778888999999999888653221


Q ss_pred             HHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHH
Q 040749          561 RHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANA  632 (643)
Q Consensus       561 ~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~  632 (643)
                         +. ..++..|..++.+.++..|-.|+..|..+....|..++.     .-.-+.+++.+++.-+.-.|..
T Consensus       284 ---~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~Ait  346 (355)
T 3tjz_B          284 ---EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLAIT  346 (355)
T ss_dssp             --------CCCTHHHHHHSSSSSSHHHHHHCC----------------------------------------
T ss_pred             ---HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHHHH
Confidence               11 234666777888888999999999999998877755433     3344556666666655555543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.43  E-value=0.026  Score=52.00  Aligned_cols=212  Identities=17%  Similarity=0.172  Sum_probs=146.5

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC-Ccch
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI-DESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~-~~~~  437 (643)
                      +...+..++..|..+-|-+|..|+..+..+++..++...-+.     ..|+-+++ ++....-.....+++.++. .++-
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~-----~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~  104 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML-----KKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPEL  104 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHH-----HHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHH-----HHHHHHHhhcccCchHHHHHHHHhHHHHhCHHH
Confidence            567899999999999999999999999999988887655443     34555544 4444554555677777764 2211


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      -     .+.+|.|..=..-|++.++.+.+.+|..+... ++.-     .+.+.-+..++.+.+..-+   +.+|.-++.-
T Consensus       105 v-----~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~-----~~v~rdi~smltskd~~Dk---l~aLnFi~al  171 (253)
T 2db0_A          105 V-----KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLM-----ASIVRDFMSMLSSKNREDK---LTALNFIEAM  171 (253)
T ss_dssp             H-----HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH-----HHHHHHHHHHTSCSSHHHH---HHHHHHHHTC
T ss_pred             H-----HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHH-----HHHHHHHHHHhcCCChHHH---HHHHHHHHHH
Confidence            1     23455566666778999999999999888632 2211     3456677788887664444   4445555555


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      .+|..+-+.. .+|.|..+|.+.+.-++..|+.+|.+++. ++.-|..      |...++-+.+.|..++......|..+
T Consensus       172 Gen~~~yv~P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          172 GENSFKYVNP-FLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             CTTTHHHHGG-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             hccCccccCc-chHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            6776665543 68899999999999999999999999998 5554433      33345556667777777766666665


Q ss_pred             h
Q 040749          596 G  596 (643)
Q Consensus       596 ~  596 (643)
                      .
T Consensus       245 ~  245 (253)
T 2db0_A          245 L  245 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.41  E-value=0.0012  Score=68.64  Aligned_cols=244  Identities=9%  Similarity=0.032  Sum_probs=151.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      .....++.+.+.+...++-.--.+..+++..++.   |   =++..|.+=+.++++-++-.|+++|+++...+-.     
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~-----  137 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDV---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDSTML-----  137 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCG---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTH-----
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHH---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHH-----
Confidence            3455677888999998888777888888663331   1   1466777777888999999999999999754311     


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHH
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR  522 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~  522 (643)
                       ....+.+-+.|.+.++.++..|+-+...|....  ...+  .++++.+-+++.+.++-+..+|+.+|+.+...+..   
T Consensus       138 -~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~---  209 (355)
T 3tjz_B          138 -QAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRL---  209 (355)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHH---
T ss_pred             -HHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchH---
Confidence             123456677888899999999999988886432  2222  36899999999999999999999999999865421   


Q ss_pred             HHHcCChHHHHHHhccC---ChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          523 AIDAGIVLPLMNLLEER---NLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       523 lv~~G~v~~Lv~lL~~~---~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                           ++..|+..+...   ++-.+..-+.++..++...+..   .....++.+...|++.++.+.-.|+.++..+....
T Consensus       210 -----a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~  281 (355)
T 3tjz_B          210 -----AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCS  281 (355)
T ss_dssp             -----HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCSSHHHHHHHHHHHTC-----
T ss_pred             -----HHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCC
Confidence                 344455555442   2222222333333333221000   12345666677778889999999999998885533


Q ss_pred             HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          600 SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       600 ~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      ...     -..++..|..++.+.++.+|--|...|..+.
T Consensus       282 ~~~-----~~~a~~~L~~fLss~d~niryvaLr~L~~l~  315 (355)
T 3tjz_B          282 AKE-----LAPAVSVLQLFCSSPKAALRYAAVRTLNKVA  315 (355)
T ss_dssp             -----------CCCTHHHHHHSSSSSSHHHHHHCC----
T ss_pred             HHH-----HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence            221     1234667777788888888877776666554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.28  E-value=0.019  Score=67.19  Aligned_cols=257  Identities=13%  Similarity=0.127  Sum_probs=176.2

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch---hHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC--Ccc
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE---NRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI--DES  436 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~--~~~  436 (643)
                      +.+..+...+......  ..|+..+..++.....   .--.++  +.+|.++..+......++..|-.++..+..  ++.
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~  129 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV  129 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence            5666667776654322  7888888888854321   112222  578888888888888999888877777654  222


Q ss_pred             hHHHHHhcCChHHHHHHhcCC-CHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHh
Q 040749          437 NKRLIAQQGAIPAIIEILQSG-STEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNL  513 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nL  513 (643)
                      ..     ...+|.|+..|.+. .+..+..|+.++..|+...  ...++.  ...||.+...+.+..+++++.|..++..+
T Consensus       130 a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~  202 (986)
T 2iw3_A          130 AI-----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKA  202 (986)
T ss_dssp             GH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HH-----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHH
Confidence            22     33578888888765 5999999999999998644  344544  68899999999998999999999999999


Q ss_pred             ccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCC----cHHHHHHHHhcCChHHHHHHH
Q 040749          514 SLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLS----FIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       514 s~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g----~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      |..-.|+..   ...+|.|++-+.+++.  +.++   +..|+.+--. .. +.+-    .+|.|.+-|...+...+..++
T Consensus       203 ~~~~~n~d~---~~~~~~~~~~~~~p~~--~~~~---~~~l~~~tfv-~~-v~~~~l~~~~p~l~r~l~~~~~~~~r~~~  272 (986)
T 2iw3_A          203 TETVDNKDI---ERFIPSLIQCIADPTE--VPET---VHLLGATTFV-AE-VTPATLSIMVPLLSRGLNERETGIKRKSA  272 (986)
T ss_dssp             GGGCCCTTT---GGGHHHHHHHHHCTTH--HHHH---HHHHTTCCCC-SC-CCHHHHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             HhcCCCcch---hhhHHHHHHHhcChhh--hHHH---HHHhhcCeeE-ee-ecchhHHHHHHHHHhhhccCcchhheeeE
Confidence            876555421   3467888888876643  4444   4455442100 00 1112    245555555666788899999


Q ss_pred             HHHHHHhc--CCHHHHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHHHHhh
Q 040749          590 AVLLELGA--NNSSFILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQLISKS  640 (643)
Q Consensus       590 ~~L~~L~~--~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~L~~~  640 (643)
                      -+.-|||.  .+|..+..++ ...+|-|...... .+|++|+.|...+..|.+-
T Consensus       273 ~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          273 VIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             EEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            99999996  4665444432 4577777776654 4899999999999888653

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.18  E-value=0.0023  Score=68.16  Aligned_cols=231  Identities=14%  Similarity=0.145  Sum_probs=151.0

Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHhhccCchhHHHHHhcC--CcHHHHHhCCC---------------C--ChHHHHHHH
Q 040749          366 SLVEQLSSS-KLEVQKEAVRKIRLLSKENPENRILIADCG--AIPPLVQLLPY---------------P--DSKILEHAV  425 (643)
Q Consensus       366 ~Lv~~L~s~-~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~---------------~--d~~~~~~a~  425 (643)
                      .++..|.+. +.+.+.-++..+..+. ..++.|..+.+.+  .+|.++.+++.               +  ..+++.+++
T Consensus       171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll-~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          171 NLINILQNIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHHhccccCCchHHHHHHHHHHHh-cchhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            455666653 4556677888888888 4678898887643  36666543321               1  346788999


Q ss_pred             HHHHHhcCCcchHHHHHhcCCh--HHHHHHhcCC-CHHHHHHHHHHHHhccccc--cchh----hhhccCChHHHHHHhc
Q 040749          426 TAVLNLSIDESNKRLIAQQGAI--PAIIEILQSG-STEARENSAAALFSLSMLD--ENKI----TIGLSDGIPPLVDLLQ  496 (643)
Q Consensus       426 ~~L~nLs~~~~~k~~i~~~g~i--~~Lv~lL~~~-~~e~~~~Aa~~L~~Ls~~~--~~k~----~i~~~g~i~~Lv~lL~  496 (643)
                      -+++-|+.+++....+...+..  +.|+.+++.. ...+...+.++|.||....  ....    .+...++ +.++..|.
T Consensus       250 l~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~  328 (480)
T 1ho8_A          250 LLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLS  328 (480)
T ss_dssp             HHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHH
T ss_pred             HHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHh
Confidence            9999999988877777655533  5666777654 4788888999999998654  1111    2222333 55666665


Q ss_pred             cC---ChhhHHHHHHH-------HHHhcc---------------CCcchH-HHHH----------cCChHHHHHHhcc--
Q 040749          497 NG---TIRGKKDAVTA-------LFNLSL---------------NQANKA-RAID----------AGIVLPLMNLLEE--  538 (643)
Q Consensus       497 ~~---~~~~~~~A~~a-------L~nLs~---------------~~~n~~-~lv~----------~G~v~~Lv~lL~~--  538 (643)
                      ..   +++...+--..       +..+++               .+..+. .+..          -.++..|+++|.+  
T Consensus       329 ~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~  408 (480)
T 1ho8_A          329 ERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKV  408 (480)
T ss_dssp             SSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhc
Confidence            43   44433322111       111221               111221 2221          2256788999973  


Q ss_pred             --------CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          539 --------RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       539 --------~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                              .++.+..-|+.=+..++. +|.||..+-+.|+=..++++|.+.++.+|.+|+.++..+..+
T Consensus       409 ~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          409 RNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence                    256667777777888877 799999888889989999999999999999999998876543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.13  E-value=0.00042  Score=54.52  Aligned_cols=48  Identities=23%  Similarity=0.421  Sum_probs=38.5

Q ss_pred             ccccccCcccccCceec-CCCCccchHHHHHHHhcC-CCCCCCcCccccc
Q 040749          274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSN-HRTCPKTRQTLAH  321 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~-~~~cP~~~~~l~~  321 (643)
                      .-.|+||.+++..-..- .|||.|...||.+||+.. ..+||.|+.....
T Consensus        15 i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           15 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            35799999998743333 799999999999999853 3689999987654

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.11  E-value=0.092  Score=48.38  Aligned_cols=211  Identities=15%  Similarity=0.198  Sum_probs=142.1

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cchHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESNKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKIT  481 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~  481 (643)
                      .++..++.+|..+-..+|.+|+..+.+++.. ++-...+     +..|+.+++ +....+.+..+.++..++.....   
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe---  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE---  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH---
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH---
Confidence            4678889999888889999999999999863 3333322     344555554 45667767777888877642111   


Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR  561 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  561 (643)
                      ++ .+.+|.+..=.+-|++..+.+...+|..+....+.    .-.+++.-+..++.+++..=+..|+..+..+..+.   
T Consensus       104 ~v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~---  175 (253)
T 2db0_A          104 LV-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS---  175 (253)
T ss_dssp             HH-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTT---
T ss_pred             HH-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccC---
Confidence            11 23455555555678999999999999988753332    22345667888898777555556666666655432   


Q ss_pred             HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      ..-+ .-.+|.|..+|++++.-+|..|+.+|.+++.-++..+..+      ..-++=+.+.++-++.+...-|..+
T Consensus       176 ~~yv-~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii------~~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          176 FKYV-NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVV------IKRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             HHHH-GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHH------HHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             cccc-CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHH------HHHHHHhcCcHHHHHHHHHHHHHHH
Confidence            2222 3579999999999999999999999999999998754433      2233334556666666665555433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.10  E-value=0.0012  Score=70.73  Aligned_cols=242  Identities=12%  Similarity=0.037  Sum_probs=157.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc--CCcHHHHHhCC---C----C---ChHHHHHHHHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC--GAIPPLVQLLP---Y----P---DSKILEHAVTAVLN  430 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~---~----~---d~~~~~~a~~~L~n  430 (643)
                      ....|+..|-++.|++|.-|+-.|+.+.+.....-......  ...-.|+.+|.   -    .   -..+|+.++.+|+.
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            67889999999999999999999999886543210000011  11222222221   1    1   24689999999999


Q ss_pred             hcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc-cCChHHHHHHhccCChhhHHHHHHH
Q 040749          431 LSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGTIRGKKDAVTA  509 (643)
Q Consensus       431 Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~a  509 (643)
                      + .+-+..     ..++..++..+..+.++++..+.-.|.++      +..+.. .++++.++..|.+.+++++..|+.+
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAet  322 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLSAEL  322 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHHHHH
Confidence            8 632222     23344444455777899999999999999      222222 5778888888899999999999999


Q ss_pred             HHHhccCCcchHHHHHcCChHHHHHHhcc-CC-hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHH
Q 040749          510 LFNLSLNQANKARAIDAGIVLPLMNLLEE-RN-LGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKEC  587 (643)
Q Consensus       510 L~nLs~~~~n~~~lv~~G~v~~Lv~lL~~-~~-~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~  587 (643)
                      |.-++ .++....+     +..+-..|.+ .+ .......+..|+.|++.+.  .+......+|.|...+++.-+.+|..
T Consensus       323 LiPIA-~p~~l~~L-----L~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~--~a~~dp~LVPRL~PFLRHtITSVR~A  394 (800)
T 3oc3_A          323 LCHFP-ITDSLDLV-----LEKCWKNIESEELISVSKTSNLSLLTKIYRENP--ELSIPPERLKDIFPCFTSPVPEVRTS  394 (800)
T ss_dssp             HTTSC-CSSTHHHH-----HHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT--TCCCCSGGGGGTGGGGTCSSHHHHHH
T ss_pred             hhhhc-chhhHHHH-----HHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc--ccccChHHHHHHHhhhcCCcHHHHHH
Confidence            99888 22222221     2223333332 11 2234556777788877653  22233578999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCcHHHHH-HHhhcCCHHHHHHHHHHHH
Q 040749          588 ATAVLLELGANNSSFILAALQYGVYEHLI-QLTEGGTSRAQRKANALLQ  635 (643)
Q Consensus       588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~-~ll~~g~~~~k~~A~~lL~  635 (643)
                      ++.+|..+.  +.         .++..+. .++-..++.+++.+..+-+
T Consensus       395 VL~TL~tfL--~~---------~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          395 ILNMVKNLS--EE---------SIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHTTTCC--CH---------HHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH--hh---------hHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            999998877  22         2333333 4666778888877776654

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.05  E-value=0.00053  Score=51.73  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=39.6

Q ss_pred             CccccccCcccccCceecCCCC-----ccchHHHHHHHhc-CCCCCCCcCcccc
Q 040749          273 HEFLCPITLEIMRDPVIIASGQ-----TFERESVQKWFDS-NHRTCPKTRQTLA  320 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~-----ty~r~~I~~~~~~-~~~~cP~~~~~l~  320 (643)
                      +.-.|.||++-..+|.+.||..     .|.+.|+++|+.. ++.+||.|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3467999999888888888653     6899999999984 6779999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.97  E-value=0.0057  Score=71.50  Aligned_cols=261  Identities=12%  Similarity=0.095  Sum_probs=172.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc---hH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES---NK  438 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~---~k  438 (643)
                      ..+..+++.++..+.+.+..|+..+..+...+...+  ....+.+..|.+.+......  +.|+.++..|+....   ..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           14 KVLEELFQKLSVATADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHHHhhccccchhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence            345557777776556667788888888775432211  11235677777777665333  889999999986432   22


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  516 (643)
                      +.+ -.+.++.++..+.+....++..|..++..+... +.+.  +  ...+|.|+..|.+. .+..+..|+.++..|+..
T Consensus        90 e~~-~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a--~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~  164 (986)
T 2iw3_A           90 EPY-IVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA--I--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA  164 (986)
T ss_dssp             HHH-HHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG--H--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccc-hHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH--H--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            222 225788888888777777887777666665421 1111  1  45688999988765 689999999999999865


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      ........=..+||.+.+.+.+..+++...|..++..+|..-+++..   ...+|.|++.+.+.  .....++..|..-.
T Consensus       165 ~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~---~~~~~~~~~~~~~p--~~~~~~~~~l~~~t  239 (986)
T 2iw3_A          165 AKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI---ERFIPSLIQCIADP--TEVPETVHLLGATT  239 (986)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT---GGGHHHHHHHHHCT--THHHHHHHHHTTCC
T ss_pred             hHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch---hhhHHHHHHHhcCh--hhhHHHHHHhhcCe
Confidence            43222222256788888888888999999999999999875444421   36799999999864  33455555554432


Q ss_pred             cC---CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          597 AN---NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       597 ~~---~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                      .-   .......     .+|.|.+=+...+...+++++-++.||++..
T Consensus       240 fv~~v~~~~l~~-----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          240 FVAEVTPATLSI-----MVPLLSRGLNERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             CCSCCCHHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred             eEeeecchhHHH-----HHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence            11   1111111     3566666666778889999999999999854

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.83  E-value=0.078  Score=61.43  Aligned_cols=205  Identities=15%  Similarity=0.057  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhC-CCCChHHHHHHHHHHHHhcCCcchHH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLL-PYPDSKILEHAVTAVLNLSIDESNKR  439 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL-~~~d~~~~~~a~~~L~nLs~~~~~k~  439 (643)
                      ...+..|+..|.+.+...+..|+..|+.+.-.. .|..      ++..|+..+ ...+..++..++..|+.+...     
T Consensus       471 eev~e~L~~~L~dd~~~~~~~AalALGli~vGT-gn~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g-----  538 (963)
T 4ady_A          471 IEVYEALKEVLYNDSATSGEAAALGMGLCMLGT-GKPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG-----  538 (963)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTC-CCHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-----
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhccc-CCHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC-----
Confidence            456777888888777666667777777663222 1111      344555543 344677888888888776532     


Q ss_pred             HHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc-cCChhhHHHHHHHHHHhccCC
Q 040749          440 LIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       440 ~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nLs~~~  517 (643)
                         ....++.+++.|.. .++-+|..++.++.--....      ++..+|..|+..+. +.+..++..|+.+|..+....
T Consensus       539 ---~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGT------Gn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          539 ---RQELADDLITKMLASDESLLRYGGAFTIALAYAGT------GNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             ---CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTS------CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ---ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC
Confidence               34567788887764 56778877776665332221      22345677777664 446788999999999877554


Q ss_pred             cchHHHHHcCChHHHHHHhc-cCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          518 ANKARAIDAGIVLPLMNLLE-ERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       518 ~n~~~lv~~G~v~~Lv~lL~-~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      +        ..++.++.+|. +.++.++..|..+|..++.....      ..++..|..++.+.++.++.+|+.+|..+.
T Consensus       610 ~--------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig  675 (963)
T 4ady_A          610 Y--------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL------QSAIDVLDPLTKDPVDFVRQAAMIALSMIL  675 (963)
T ss_dssp             C--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHS
T ss_pred             H--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc------HHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence            3        24666777664 47888999999999998653211      245778888888889999999999999988


Q ss_pred             cCCH
Q 040749          597 ANNS  600 (643)
Q Consensus       597 ~~~~  600 (643)
                      .+..
T Consensus       676 ~gtn  679 (963)
T 4ady_A          676 IQQT  679 (963)
T ss_dssp             TTCC
T ss_pred             cCCc
Confidence            6543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.79  E-value=0.021  Score=57.18  Aligned_cols=186  Identities=14%  Similarity=0.162  Sum_probs=122.4

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHhhccCchhH--HH-HHhcC-CcHHHHHhCCCCChHHHHHHHHHHHHhcCC---cc-hH
Q 040749          367 LVEQLSSSKLEVQKEAVRKIRLLSKENPENR--IL-IADCG-AIPPLVQLLPYPDSKILEHAVTAVLNLSID---ES-NK  438 (643)
Q Consensus       367 Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r--~~-i~~~g-~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~---~~-~k  438 (643)
                      |-+.|.|.+|..|..|+..|..+....+...  .. +...+ .++.+.+.+...+..++..++.+|..++..   .. .+
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            5688999999999999999998775433211  11 11122 455566788888999999999999887642   11 11


Q ss_pred             H--HHHhcCChHHHHHH-hcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          439 R--LIAQQGAIPAIIEI-LQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       439 ~--~i~~~g~i~~Lv~l-L~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      .  ...-...++.|+.- |.++...++..|..++..+.......     ...++.++..+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-----~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-----TQSVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-----HHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-----HHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            1  12234567777764 77777888888888887765322111     1234566667788899999999988887653


Q ss_pred             C--Ccc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCC
Q 040749          516 N--QAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATH  557 (643)
Q Consensus       516 ~--~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~  557 (643)
                      .  ... -....-..+++.+..+|.+.++.+++.|..++..+-..
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            2  111 11111123456678888889999999999999888653

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=96.74  E-value=0.00096  Score=54.73  Aligned_cols=46  Identities=11%  Similarity=0.194  Sum_probs=38.6

Q ss_pred             ccccCcccccC-ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          276 LCPITLEIMRD-PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       276 ~CpIc~~~m~d-Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .|++|.-.+.. ..++||+|.||..|+..|...+..+||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            48888776653 35679999999999999998888899999988774

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.33  E-value=0.00074  Score=68.24  Aligned_cols=49  Identities=20%  Similarity=0.471  Sum_probs=38.8

Q ss_pred             CccccccCcccccC----cee----cCCCCccchHHHHHHHhcCC----------CCCCCcCccccc
Q 040749          273 HEFLCPITLEIMRD----PVI----IASGQTFERESVQKWFDSNH----------RTCPKTRQTLAH  321 (643)
Q Consensus       273 ~~f~CpIc~~~m~d----Pv~----~~cg~ty~r~~I~~~~~~~~----------~~cP~~~~~l~~  321 (643)
                      ..-.|+||...+.+    |..    ..|||.|...||.+||.+..          .+||.|+++++.
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            34579999999886    422    36999999999999998521          369999998874

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.91  E-value=0.28  Score=47.70  Aligned_cols=227  Identities=18%  Similarity=0.200  Sum_probs=147.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHH-------hCCCCC-----hHHHHHHHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQ-------LLPYPD-----SKILEHAVTAVL  429 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~-------lL~~~d-----~~~~~~a~~~L~  429 (643)
                      .+..++..|.++  +.+..|+.+|..--...++.--.+=. .|.+..|++       .++.+.     +.-..+|+..|-
T Consensus         4 ~i~qli~~L~~p--~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ   81 (268)
T 2fv2_A            4 KIYQWINELSSP--ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ   81 (268)
T ss_dssp             HHHHHHHHTSST--TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc--hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence            344555556543  45777777666533222222222222 355555532       333321     223467777888


Q ss_pred             HhcCCcchHHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccc--hhhhhccCChHHHHHHhccCChhh
Q 040749          430 NLSIDESNKRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDEN--KITIGLSDGIPPLVDLLQNGTIRG  502 (643)
Q Consensus       430 nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~--k~~i~~~g~i~~Lv~lL~~~~~~~  502 (643)
                      -++.+++.|..+..++..--|--.|+..+     ...|-.+..++..|...++.  -..+.+.+.||..++.+..|+.-.
T Consensus        82 cvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS  161 (268)
T 2fv2_A           82 CVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS  161 (268)
T ss_dssp             HHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH
T ss_pred             HHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH
Confidence            88999999999999887666666776543     56788889999998865442  233446899999999999999999


Q ss_pred             HHHHHHHHHHhccCCcchHHHHH--------cCChHHHHHHh-ccCChhhHHHHHHHHHHHhCChhhHHHhhc-------
Q 040749          503 KKDAVTALFNLSLNQANKARAID--------AGIVLPLMNLL-EERNLGMVDEALSILLLLATHPEGRHKIGQ-------  566 (643)
Q Consensus       503 ~~~A~~aL~nLs~~~~n~~~lv~--------~G~v~~Lv~lL-~~~~~~~~~~Al~~L~~La~~~~~~~~i~~-------  566 (643)
                      |..|...+..+-.++.+-..+..        ..++..++.-+ .++++.+..+.+.+-..|+.++..++++..       
T Consensus       162 KtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lr  241 (268)
T 2fv2_A          162 KTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLK  241 (268)
T ss_dssp             HHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhh
Confidence            99999999988766655433321        22333333333 448889999999999999999999988754       


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      .|.+.   .++ .+++..+..-...+.++
T Consensus       242 d~tf~---~~l-~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          242 DTTFA---QVL-KDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             SSTTH---HHH-TSCHHHHHHHHHHHHHS
T ss_pred             ChHHH---HHH-hcCHHHHHHHHHHHHhc
Confidence            22222   223 25677776666666554

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.82  E-value=0.066  Score=53.02  Aligned_cols=180  Identities=13%  Similarity=0.163  Sum_probs=120.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcC-CcHHHHHhCCCCChHHHHHHHHHHHHhcC---CcchHHH
Q 040749          365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCG-AIPPLVQLLPYPDSKILEHAVTAVLNLSI---DESNKRL  440 (643)
Q Consensus       365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g-~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~---~~~~k~~  440 (643)
                      +.+...|.+.++..+.+|+..|......+++  ..+.... .++++.-.+...+..+...++.+|..+..   ....+-.
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~  126 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMS  126 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccch
Confidence            3456677778898899999988887644432  2222211 23444333445688888888887776532   1111110


Q ss_pred             HHh-cCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc
Q 040749          441 IAQ-QGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN  519 (643)
Q Consensus       441 i~~-~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n  519 (643)
                      -.+ .-.+|.|+.-+......+|..+-.++..+...      ......++.++.-+++.+.+.+..++..+..+-...+-
T Consensus       127 ~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~  200 (266)
T 2of3_A          127 QEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGI  200 (266)
T ss_dssp             HHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence            011 23689999988777788888888887776532      11134667788888888999999999888887542222


Q ss_pred             hHHHHHcCCh---HHHHHHhccCChhhHHHHHHHHHHHhC
Q 040749          520 KARAIDAGIV---LPLMNLLEERNLGMVDEALSILLLLAT  556 (643)
Q Consensus       520 ~~~lv~~G~v---~~Lv~lL~~~~~~~~~~Al~~L~~La~  556 (643)
                      .    ...++   +.+.+++.+.+..+++.|+.++..+-.
T Consensus       201 ~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          201 S----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             G----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             C----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            2    24478   999999999999999999988886643

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=95.42  E-value=0.048  Score=64.62  Aligned_cols=251  Identities=9%  Similarity=0.082  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC------CCChHHHHHHHHHHHHhcCCcchHHHHHhc-----C
Q 040749          377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP------YPDSKILEHAVTAVLNLSIDESNKRLIAQQ-----G  445 (643)
Q Consensus       377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~-----g  445 (643)
                      ..+..|...|..++...+   ..+.. -.++.+...+.      +.+...++.|+.+++.++........-...     .
T Consensus       376 s~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~  451 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLN  451 (960)
T ss_dssp             CHHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCC
T ss_pred             CcHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCccccccccc
Confidence            456677777777775432   11111 12333333444      456788899999999997531110000000     1


Q ss_pred             ChH----HHHHHhcCC---CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc
Q 040749          446 AIP----AIIEILQSG---STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA  518 (643)
Q Consensus       446 ~i~----~Lv~lL~~~---~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~  518 (643)
                      ..+    .++..|.+.   ++.+|..|+++|..++..- .+..  -...++.++..|.+.+..++..|+.||.+++....
T Consensus       452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~--l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~  528 (960)
T 1wa5_C          452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ--LIELMPILATFLQTDEYVVYTYAAITIEKILTIRE  528 (960)
T ss_dssp             HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBS
T ss_pred             HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH--HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhccc
Confidence            111    223334555   7899999999999998641 1111  24567888888888889999999999999986421


Q ss_pred             ---------chHHHHH--cCChHHHHHHhccCC---h--hhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHHhc-
Q 040749          519 ---------NKARAID--AGIVLPLMNLLEERN---L--GMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYIRE-  579 (643)
Q Consensus       519 ---------n~~~lv~--~G~v~~Lv~lL~~~~---~--~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL~~-  579 (643)
                               .+..+..  ..+++.|+.++....   .  ...+.++.+|..++..  ++... .. ...++.|...+.. 
T Consensus       529 ~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p-~~-~~l~~~L~~~l~~~  606 (960)
T 1wa5_C          529 SNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQP-LF-PQLLAQFIEIVTIM  606 (960)
T ss_dssp             CSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGG-GH-HHHHHHHHHHHHHH
T ss_pred             ccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhh-HH-HHHHHHHHHHHHHH
Confidence                     1222211  234444555555431   1  1234555666555431  11111 11 1244555554432 


Q ss_pred             ----CChHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          580 ----GTPKNKECATAVLLELGAN-NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       580 ----~s~~~~e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                          .++..+..++.+|..++.. +++.... ....+++.+..++.+........+..++..+
T Consensus       607 ~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~-~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l  668 (960)
T 1wa5_C          607 AKNPSNPRFTHYTFESIGAILNYTQRQNLPL-LVDSMMPTFLTVFSEDIQEFIPYVFQIIAFV  668 (960)
T ss_dssp             TTSCCCHHHHHHHHHHHHHHHHTSCGGGHHH-HHHHHHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred             HhCCCCcHHHHHHHHHHHHHHhcCCcchHHH-HHHHHHHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence                2455666678888777765 3333332 3345678888877766544555555555444

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.15  E-value=0.14  Score=51.04  Aligned_cols=187  Identities=18%  Similarity=0.143  Sum_probs=120.9

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcccccc---chhhhh-c-cCChHHHHHHhccCChhhHHHHHHHHHHhccCCc---
Q 040749          447 IPAIIEILQSGSTEARENSAAALFSLSMLDE---NKITIG-L-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA---  518 (643)
Q Consensus       447 i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~~i~-~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~---  518 (643)
                      +| +-+-|.+.++..|..|...|..+.....   ...... . ...++.+-..+.+.+..+...++.+|..+...-.   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            45 5678889999999999998877643211   111111 1 2345566677888899999999999988764221   


Q ss_pred             -chH--HHHHcCChHHHHHH-hccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          519 -NKA--RAIDAGIVLPLMNL-LEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       519 -n~~--~lv~~G~v~~Lv~l-L~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                       .+.  ...-..+++.|+.- |.+....++..|+.++..++.......     .++..+...+.+.+|.++..++..|..
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-----~~~e~l~~~l~~Knpkv~~~~l~~l~~  165 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-----QSVELVIPFFEKKLPKLIAAAANCVYE  165 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-----HHHHHHGGGGGCSCHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-----HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence             122  22335567777764 677778888888888877754221111     134555666778899999999998887


Q ss_pred             HhcC-CHHH--HHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          595 LGAN-NSSF--ILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       595 L~~~-~~~~--~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      +... +...  ....+ ..+++.+..++.+.++.+|..|..++..+.++
T Consensus       166 ~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            6542 1111  11111 12456677888999999999999998877654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=94.31  E-value=0.79  Score=44.55  Aligned_cols=94  Identities=21%  Similarity=0.216  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCC-----hHHHHHHHHHHHHHhcC-CHHHHHHHHHCCcHHHHHH
Q 040749          544 VDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGT-----PKNKECATAVLLELGAN-NSSFILAALQYGVYEHLIQ  617 (643)
Q Consensus       544 ~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s-----~~~~e~A~~~L~~L~~~-~~~~~~~~~~~g~i~~L~~  617 (643)
                      +.+|++.|..+|++++.|..+.+++..-.|..+|...+     ...|-.+++++..|... +++....+++..++|..++
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLr  152 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLR  152 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHH
Confidence            57788999999999999999999999888999998765     34577899999998865 4566777889999999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHH
Q 040749          618 LTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       618 ll~~g~~~~k~~A~~lL~~L  637 (643)
                      .++.|++-.|--|..++..+
T Consensus       153 ime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A          153 IMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHHSCHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHH
Confidence            99999999999999988765

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=93.97  E-value=0.074  Score=52.09  Aligned_cols=45  Identities=9%  Similarity=0.057  Sum_probs=27.5

Q ss_pred             cHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHH
Q 040749          406 IPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAA  467 (643)
Q Consensus       406 i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~  467 (643)
                      .+.|..++..++..++..++..|   .              .+.+..+++.+++++|..++.
T Consensus       100 ~~~L~~ll~D~d~~VR~~aA~~l---~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          100 REQLSALMFDEDREVRITVADRL---P--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             SGGGGGTTTCSCHHHHHHHHHHS---C--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhC---C--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            35677777777888887776632   1              123444455666666666665

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=93.96  E-value=0.048  Score=56.01  Aligned_cols=63  Identities=16%  Similarity=0.221  Sum_probs=52.4

Q ss_pred             ccccccCcccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749          274 EFLCPITLEIMRDPVII-ASGQT--FERESVQKWFD-SNHRTCPKTRQTLAHLSIAPNYALKNLILQ  336 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~  336 (643)
                      .+.||+++..|..|+-- .|.|.  |+...+..+.. .+.+.||.|++.+...++..+..+..++..
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            48999999999999975 79997  88877666554 467889999999999999998888777654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.92  E-value=0.02  Score=47.81  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=29.1

Q ss_pred             CccccccCccc-ccCcee--cCCCCccchHHHHHHHh
Q 040749          273 HEFLCPITLEI-MRDPVI--IASGQTFERESVQKWFD  306 (643)
Q Consensus       273 ~~f~CpIc~~~-m~dPv~--~~cg~ty~r~~I~~~~~  306 (643)
                      ++..|+||.+. ..+||.  +.|||+||+.|++.|..
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~   38 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP   38 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence            46789999965 789998  89999999999998544

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.73  E-value=1.7  Score=51.30  Aligned_cols=219  Identities=9%  Similarity=0.050  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHHHHHHhhccCchhHHHHHh----cCCcHH----HHHhCCCC---ChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          373 SSKLEVQKEAVRKIRLLSKENPENRILIAD----CGAIPP----LVQLLPYP---DSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       373 s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~----~g~i~~----Lv~lL~~~---d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      +.+|..+..|+..++.++.........+..    ....+.    ++..|.++   ++.++..|+++|+.++..- .+.. 
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~~-  493 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKAQ-  493 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHHH-
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHHH-
Confidence            567888889999999987432100000000    011222    22233444   7889999999999998642 2222 


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc---------chhhhhc--cCChHHHHHHhccCC---h--hhHHH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE---------NKITIGL--SDGIPPLVDLLQNGT---I--RGKKD  505 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---------~k~~i~~--~g~i~~Lv~lL~~~~---~--~~~~~  505 (643)
                       -...++.++..|.+.+..++..|+.+|.+++...+         .+..+..  ...++.|+.++....   .  .....
T Consensus       494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~  572 (960)
T 1wa5_C          494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF  572 (960)
T ss_dssp             -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred             -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence             23467888888888889999999999999886421         2333332  345566666776641   1  12345


Q ss_pred             HHHHHHHhccC-CcchHHHHHcCChHHHHHHhcc-----CChhhHHHHHHHHHHHhCC--hhhHHHhhcCCcHHHHHHHH
Q 040749          506 AVTALFNLSLN-QANKARAIDAGIVLPLMNLLEE-----RNLGMVDEALSILLLLATH--PEGRHKIGQLSFIETLVEYI  577 (643)
Q Consensus       506 A~~aL~nLs~~-~~n~~~lv~~G~v~~Lv~lL~~-----~~~~~~~~Al~~L~~La~~--~~~~~~i~~~g~i~~Lv~lL  577 (643)
                      +..+|..+... .+....... .+++.|+..+..     .+......++.+|..++..  ++....+ ...+++.+..+|
T Consensus       573 l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~-~~~~~p~~~~iL  650 (960)
T 1wa5_C          573 LMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLL-VDSMMPTFLTVF  650 (960)
T ss_dssp             HHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHH
Confidence            56666655421 121111111 134445544432     3445555677777777653  3233222 235677777888


Q ss_pred             hcCChHHHHHHHHHHHHHh
Q 040749          578 REGTPKNKECATAVLLELG  596 (643)
Q Consensus       578 ~~~s~~~~e~A~~~L~~L~  596 (643)
                      ........+.+..++..+.
T Consensus       651 ~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          651 SEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HTTCTTTHHHHHHHHHHHH
T ss_pred             HhhhHhhHHHHHHHHHHHH
Confidence            7655555666666655443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.40  E-value=0.96  Score=45.82  Aligned_cols=195  Identities=14%  Similarity=0.123  Sum_probs=146.8

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHH----HHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRIL----IAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~----i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      +.+..|+..|..-+.+.+..++....++.+.....|-.    +.. ...+..|+.-.  +++++--++-..|.....++.
T Consensus        78 dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--e~~diAl~~G~mLRecir~e~  155 (341)
T 1upk_A           78 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP  155 (341)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred             CHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh--ccchhHhHHHHHHHHHHHhHH
Confidence            56888999999999999999999888888766554322    222 11223333322  356666777788888888888


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhc---cCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGL---SDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      -...+...+.+-.+.+.+..++-++...|..++..|-..+. .......   ...+...-.||.+++--.+..++..|..
T Consensus       156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLge  235 (341)
T 1upk_A          156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE  235 (341)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHH
Confidence            77777788888899999999999999999999888754321 1111111   3467777889999999999999999999


Q ss_pred             hccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749          513 LSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP  558 (643)
Q Consensus       513 Ls~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  558 (643)
                      |-....|...|..    ..-+..++.+|.+.+..++-+|..++.....+|
T Consensus       236 lLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          236 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCC
Confidence            9999888776654    456788899999999999999999998877655

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=93.10  E-value=0.081  Score=54.15  Aligned_cols=64  Identities=13%  Similarity=0.207  Sum_probs=53.2

Q ss_pred             CccccccCcccccCceec-CCCCc--cchHHHHHHHh-cCCCCCCCcCcccccCCCCccHHHHHHHHH
Q 040749          273 HEFLCPITLEIMRDPVII-ASGQT--FERESVQKWFD-SNHRTCPKTRQTLAHLSIAPNYALKNLILQ  336 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~-~cg~t--y~r~~I~~~~~-~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~  336 (643)
                      -.+.||++...|..|+-- .|.|.  |+...+..+.. .+.+.||.|++.+...++..+..+...+..
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            358999999999999975 79987  88877776665 467899999999999999988887777654

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.78  E-value=0.85  Score=46.01  Aligned_cols=136  Identities=11%  Similarity=0.064  Sum_probs=91.7

Q ss_pred             ChhhHHHHHHHHHHhccCCcchHHHHHc--CChHHHHHHhccCChhhHHHHHHHHHHHhCChh---hHHHhhcCCcHHHH
Q 040749          499 TIRGKKDAVTALFNLSLNQANKARAIDA--GIVLPLMNLLEERNLGMVDEALSILLLLATHPE---GRHKIGQLSFIETL  573 (643)
Q Consensus       499 ~~~~~~~A~~aL~nLs~~~~n~~~lv~~--G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~---~~~~i~~~g~i~~L  573 (643)
                      .+..+..+++++.|+-.++..+..+...  .+++.+...+.+.+..++..+..++.|++...-   ..+.  ...++..+
T Consensus       161 ~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l  238 (304)
T 3ebb_A          161 KPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLI  238 (304)
T ss_dssp             CHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHH
Confidence            4556788999999999888888777652  233444444444677888899999999976211   0011  01134445


Q ss_pred             HHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHHH
Q 040749          574 VEYIRE-GTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQL  636 (643)
Q Consensus       574 v~lL~~-~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~~  636 (643)
                      ..++.. .+++....++.+|.+|...+++....+...|+-..+-.+... ..+++.+.|..+|..
T Consensus       239 ~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          239 STILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            555543 467888899999999988777666666667776666666655 477888888887754

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.64  E-value=1.6  Score=42.16  Aligned_cols=175  Identities=15%  Similarity=0.206  Sum_probs=104.7

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC----C-------ChHHHHHHHHHHHHhcC
Q 040749          367 LVEQLSSSK-LEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY----P-------DSKILEHAVTAVLNLSI  433 (643)
Q Consensus       367 Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~----~-------d~~~~~~a~~~L~nLs~  433 (643)
                      .++.|.+.. .+.-.+.+..|+.....++ ..-..+ ..+|+..|+.+|..    +       +...+..++.+|..+..
T Consensus         5 yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn   83 (233)
T 2f31_A            5 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN   83 (233)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC
Confidence            455555432 2222234445543333333 333334 46777777776642    1       34667888999999988


Q ss_pred             CcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhhh----------hccCChHHHHHHhccC-
Q 040749          434 DESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KITI----------GLSDGIPPLVDLLQNG-  498 (643)
Q Consensus       434 ~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~~~-  498 (643)
                      +..+...+. ..+++..|+..|.+..+.++..++.+|..++..++  . ...+          .+..-+..+++.+++. 
T Consensus        84 ~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~  163 (233)
T 2f31_A           84 NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGT  163 (233)
T ss_dssp             SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTS
T ss_pred             ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCC
Confidence            887777666 56789999999998899999999998888876543  3 2222          2334667788888743 


Q ss_pred             ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhccCChh
Q 040749          499 TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEERNLG  542 (643)
Q Consensus       499 ~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~~~~~  542 (643)
                      +.+.+..++..+-.+...+++       |..+...|..+.+-++=...++.
T Consensus       164 ~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~  214 (233)
T 2f31_A          164 SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENED  214 (233)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHH
T ss_pred             hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHH
Confidence            444554444444445555544       23345566655554443324443

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=92.62  E-value=0.92  Score=45.77  Aligned_cols=161  Identities=14%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCC----cHHHHHhCCC-CChHHHHHHHHHHHHhcCCcch
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGA----IPPLVQLLPY-PDSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~----i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      .+..+.+.+ +=+.+.+.-++..+|.++. ++.....+.+...    +..+...+.. ..+..+--+++++.|+..++.+
T Consensus       104 ~l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g  181 (304)
T 3ebb_A          104 QLQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAG  181 (304)
T ss_dssp             HHHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHH
T ss_pred             HHHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchh
Confidence            445555554 2233445566666676663 4555445544322    2233444443 3556688899999999999988


Q ss_pred             HHHHHhc--CChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhh-ccCChHHHHHHhc-cCChhhHHHHHHHHHHh
Q 040749          438 KRLIAQQ--GAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIG-LSDGIPPLVDLLQ-NGTIRGKKDAVTALFNL  513 (643)
Q Consensus       438 k~~i~~~--g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-~~g~i~~Lv~lL~-~~~~~~~~~A~~aL~nL  513 (643)
                      +..+...  ..++.+...+.+.+..++..++.+++|++..-......- ....+..+..++. ..+.+...-++.||.+|
T Consensus       182 ~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          182 QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            8877642  344444555555678899999999999985421111110 1123344444443 34778889999999999


Q ss_pred             ccCCcchHHHHH
Q 040749          514 SLNQANKARAID  525 (643)
Q Consensus       514 s~~~~n~~~lv~  525 (643)
                      ...+.....+.+
T Consensus       262 ~~~~~~~~~lak  273 (304)
T 3ebb_A          262 ISDDSNAVQLAK  273 (304)
T ss_dssp             HTTCHHHHHHHH
T ss_pred             HhCChhHHHHHH
Confidence            876655555544

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.47  E-value=0.092  Score=51.16  Aligned_cols=49  Identities=20%  Similarity=0.366  Sum_probs=38.8

Q ss_pred             ccccccCcccccCceec-CCCCccchHHHHHHHhc-CCCCCCCcCcccccC
Q 040749          274 EFLCPITLEIMRDPVII-ASGQTFERESVQKWFDS-NHRTCPKTRQTLAHL  322 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~-~~~~cP~~~~~l~~~  322 (643)
                      -..|.||.++..--+.- .|++.|...|+.+|+.. +...||.|+...+..
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            35699999998854443 39999999999999985 356899999876654

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.38  E-value=0.55  Score=46.35  Aligned_cols=180  Identities=14%  Similarity=0.072  Sum_probs=113.5

Q ss_pred             HHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH----HhcCCCHHHHHHHHHHHHhccc---cccchh
Q 040749          408 PLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE----ILQSGSTEARENSAAALFSLSM---LDENKI  480 (643)
Q Consensus       408 ~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~---~~~~k~  480 (643)
                      .+...|-+.|..-+..|+..|......  +...+.  ..++.+++    .+.+.+..+...+..+|..+..   ..+++-
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l~~--~~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~  125 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLADT--SPRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPM  125 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHHHH--CHHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhhh--ChHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccc
Confidence            344455555777777777776664321  222221  12333333    3335677777777777666531   122222


Q ss_pred             hhhc-cCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749          481 TIGL-SDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP  558 (643)
Q Consensus       481 ~i~~-~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  558 (643)
                      .-.+ .-.+|.|+.-+.+....++..+-.++..++. ++.+       .+++.+++-+.+.+...++.++..+..+-...
T Consensus       126 ~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~-------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          126 SQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL-------KMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             CHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH-------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH-------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            2122 3468999988888888888877777766653 2222       24566777778888999999998888885422


Q ss_pred             hhHHHhhcCCcH---HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 040749          559 EGRHKIGQLSFI---ETLVEYIREGTPKNKECATAVLLELGANNSSF  602 (643)
Q Consensus       559 ~~~~~i~~~g~i---~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~  602 (643)
                       |..   ...++   +.+.+++.+.+..+|..|+.++..+....++.
T Consensus       199 -G~~---~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~  241 (266)
T 2of3_A          199 -GIS---PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ  241 (266)
T ss_dssp             -CSG---GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred             -CCC---ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence             111   23467   99999999999999999999998877654443

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.54  E-value=3.8  Score=42.66  Aligned_cols=177  Identities=15%  Similarity=0.211  Sum_probs=110.8

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCC-----------CCChHHHHHHHHHHHHh
Q 040749          365 VSLVEQLSSSK-LEVQKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLP-----------YPDSKILEHAVTAVLNL  431 (643)
Q Consensus       365 ~~Lv~~L~s~~-~~~~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~-----------~~d~~~~~~a~~~L~nL  431 (643)
                      ...+..|.++. .+...+.+..|+.....++ ..-..+. .+|+..|+.+|.           ..+...+..++.+|..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34455555542 2222344555554443443 3334444 677888888774           12457788899999999


Q ss_pred             cCCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhh----------hhccCChHHHHHHhcc
Q 040749          432 SIDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KIT----------IGLSDGIPPLVDLLQN  497 (643)
Q Consensus       432 s~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~----------i~~~g~i~~Lv~lL~~  497 (643)
                      ..+..+...+. ...+|..|+..|.+..+.++..+..+|..++..++  + ...          .++..-+..++..|++
T Consensus       148 mN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~  227 (383)
T 3eg5_B          148 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  227 (383)
T ss_dssp             TSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             hcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHc
Confidence            88887777666 56789999999999999999999999988876553  2 222          2234567888888886


Q ss_pred             C-ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhcc-CChhh
Q 040749          498 G-TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEE-RNLGM  543 (643)
Q Consensus       498 ~-~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~-~~~~~  543 (643)
                      + +.+.+..++..+-.+...+++       +..+...|..+.+-. |.. .++.+
T Consensus       228 ~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~-lr~~~~~~L  281 (383)
T 3eg5_B          228 GTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQE-LREIENEDM  281 (383)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHH-HTTSCCHHH
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHHHH-HhcCCChhH
Confidence            4 555555454444445555443       234556776666655 544 34433

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=91.30  E-value=0.45  Score=46.47  Aligned_cols=88  Identities=16%  Similarity=0.151  Sum_probs=60.8

Q ss_pred             HHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChH
Q 040749          369 EQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIP  448 (643)
Q Consensus       369 ~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~  448 (643)
                      .++.++++.++..|+..+                  ....|..++..+++.++..++..|   .              .+
T Consensus        57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~  101 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE  101 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred             HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence            345778888888888742                  134577888899999999888642   1              24


Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749          449 AIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT  508 (643)
Q Consensus       449 ~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~  508 (643)
                      .|..++++.++++|..++..   +.              .+.|..++++.+..++..++.
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~  144 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQ  144 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHH
Confidence            56777888899999988774   21              123445566677777776665

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.90  E-value=7.8  Score=45.41  Aligned_cols=172  Identities=15%  Similarity=0.056  Sum_probs=96.1

Q ss_pred             CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh---c--cCChhhHHHHHHHHHHhccCCcchHHHHHcCChHH
Q 040749          457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL---Q--NGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLP  531 (643)
Q Consensus       457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~  531 (643)
                      .++..++.|..++..++..-....    ...++.++.++   .  +.++.++..++++|..++..-....... ..+++.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l-~~vl~~  550 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI-PPAINL  550 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH-HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHH
Confidence            467788889999888875322111    13344444443   3  2378889999999998875311111111 124455


Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HHHHHH
Q 040749          532 LMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG--TPKNKECATAVLLELGANNS-SFILAA  606 (643)
Q Consensus       532 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~-~~~~~~  606 (643)
                      |+..| +  +.+...|+.++.+++.  +.+..+..  ...+..+..++..+  +...+..+..++..+...-+ +.....
T Consensus       551 l~~~l-~--~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~  625 (971)
T 2x1g_F          551 LVRGL-N--SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY  625 (971)
T ss_dssp             HHHHH-H--SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             HHHHh-C--hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            56666 2  6889999999999994  23333332  24556666777763  46788888888888876432 222221


Q ss_pred             HH---CCcHHHHHHHhhcC--CHHHHHHHHHHHHHHH
Q 040749          607 LQ---YGVYEHLIQLTEGG--TSRAQRKANALLQLIS  638 (643)
Q Consensus       607 ~~---~g~i~~L~~ll~~g--~~~~k~~A~~lL~~L~  638 (643)
                      .+   .-.+..+..++.+.  ++..+..+...|..|.
T Consensus       626 ~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~  662 (971)
T 2x1g_F          626 LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMIS  662 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence            11   12333333444443  4444555555555443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=90.00  E-value=11  Score=44.18  Aligned_cols=211  Identities=14%  Similarity=0.054  Sum_probs=118.3

Q ss_pred             CChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHh---c--CCCHHHHHHHHHHHHhccccc-cchhhhhccCChH
Q 040749          416 PDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEIL---Q--SGSTEARENSAAALFSLSMLD-ENKITIGLSDGIP  489 (643)
Q Consensus       416 ~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL---~--~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~  489 (643)
                      .+...++.|+.++..++..-....    ...++.++.++   .  ..++.++..+++++..++..- .+...+  ..+++
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~  549 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAIN  549 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHH
Confidence            467788999999999986422111    12334444433   3  247899999999999987431 111111  24566


Q ss_pred             HHHHHhccCChhhHHHHHHHHHHhccCCcchHHHHH--cCChHHHHHHhcc--CChhhHHHHHHHHHHHhCC--hhhHHH
Q 040749          490 PLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAID--AGIVLPLMNLLEE--RNLGMVDEALSILLLLATH--PEGRHK  563 (643)
Q Consensus       490 ~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~--~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~--~~~~~~  563 (643)
                      .|+..| +  +.++..|+.++.+++..-  +..+..  ..++..|..++..  .+...+..++.++..++..  ++....
T Consensus       550 ~l~~~l-~--~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~  624 (971)
T 2x1g_F          550 LLVRGL-N--SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK  624 (971)
T ss_dssp             HHHHHH-H--SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             HHHHHh-C--hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            666666 3  788999999999999432  223322  3445555566655  3456777778888777653  122222


Q ss_pred             hhcCCcHHHHHHHH----hcC--ChHHHHHHHHHHHHHhcC-----CH-----------HHHHHHHHCCcHHHHHHHhhc
Q 040749          564 IGQLSFIETLVEYI----REG--TPKNKECATAVLLELGAN-----NS-----------SFILAALQYGVYEHLIQLTEG  621 (643)
Q Consensus       564 i~~~g~i~~Lv~lL----~~~--s~~~~e~A~~~L~~L~~~-----~~-----------~~~~~~~~~g~i~~L~~ll~~  621 (643)
                      ... ..++.++..+    ...  ++..+......|..|+..     ..           .... -....+++.+..++..
T Consensus       625 ~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~l~~  702 (971)
T 2x1g_F          625 YLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRIAEM  702 (971)
T ss_dssp             HHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHHHHh
Confidence            222 2334444433    222  333444444444444321     10           0001 1124577877777754


Q ss_pred             --CCHHHHHHHHHHHHHHHh
Q 040749          622 --GTSRAQRKANALLQLISK  639 (643)
Q Consensus       622 --g~~~~k~~A~~lL~~L~~  639 (643)
                        .++.+.+.|..++..+..
T Consensus       703 ~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          703 WVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             TTTCHHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHH
Confidence              367889999988887654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=89.84  E-value=24  Score=41.06  Aligned_cols=218  Identities=13%  Similarity=0.050  Sum_probs=127.2

Q ss_pred             HHHHHHHHH-hcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC------
Q 040749          362 EEIVSLVEQ-LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI------  433 (643)
Q Consensus       362 ~~i~~Lv~~-L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~------  433 (643)
                      ..+..+++. ..+++++.+.+|-..|..+-+ +|         ++.+.+..+|. +.+..+|..|+.+|.|...      
T Consensus        24 ~~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~-~p---------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l   93 (963)
T 2x19_B           24 ENVEKALHQLYYDPNIENKNLAQKWLMQAQV-SP---------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI   93 (963)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-ST---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-CH---------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence            345566655 446788888888888888764 33         34555666665 4478899999999998643      


Q ss_pred             CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhcc-----CChhhHHHHHH
Q 040749          434 DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQN-----GTIRGKKDAVT  508 (643)
Q Consensus       434 ~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~-----~~~~~~~~A~~  508 (643)
                      .++.+..| ....+..+... .++...++...+.++..+...+...   .-++.++.|+.++++     .+......++.
T Consensus        94 ~~~~~~~i-r~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~  168 (963)
T 2x19_B           94 PTDQYESL-KAQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLE  168 (963)
T ss_dssp             CGGGHHHH-HHHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred             CHHHHHHH-HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            23344444 22344444442 2246788888888888887553211   125788999998875     24456677777


Q ss_pred             HHHHhccC---C---cchHHHHH---cCChHHHHHH----hccCC--hhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHH
Q 040749          509 ALFNLSLN---Q---ANKARAID---AGIVLPLMNL----LEERN--LGMVDEALSILLLLATHPEGRHKIGQLSFIETL  573 (643)
Q Consensus       509 aL~nLs~~---~---~n~~~lv~---~G~v~~Lv~l----L~~~~--~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~L  573 (643)
                      .|..|+..   .   ..+...++   ...++.++.+    +....  ..+...++.++........  ........++.+
T Consensus       169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~--~~~~~~~ll~~l  246 (963)
T 2x19_B          169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEV--PLQDCEALIQAA  246 (963)
T ss_dssp             HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSC--CGGGTHHHHHHH
T ss_pred             HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCC--CcccchHHHHHH
Confidence            77777631   1   11111111   1234444444    33322  1366777777755443111  011113345555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          574 VEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       574 v~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      .+.+  .++..++.|+.+|..+...
T Consensus       247 ~~~l--~~~~~~~~a~~~l~~i~~~  269 (963)
T 2x19_B          247 FAAL--QDSELFDSSVEAIVNAISQ  269 (963)
T ss_dssp             HHHT--TSTTTHHHHHHHHHHHHTC
T ss_pred             HHHh--CCchHHHHHHHHHHHHHcc
Confidence            5555  3578899999999998864

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=89.34  E-value=6.3  Score=41.03  Aligned_cols=177  Identities=16%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             HHHHHhcCCCHHH-HHHHHHHHHHhhccCc-hhHHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhc
Q 040749          366 SLVEQLSSSKLEV-QKEAVRKIRLLSKENP-ENRILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLS  432 (643)
Q Consensus       366 ~Lv~~L~s~~~~~-~~~A~~~L~~L~~~~~-~~r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs  432 (643)
                      ..|+.|.+..... -.+.+..|+.....++ ..-..+. .+|+..|+.+|..           .+...+..++.+|..+.
T Consensus         8 ~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm   86 (386)
T 2bnx_A            8 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   86 (386)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh
Confidence            3455555432221 1234445544333333 2233343 5677777776642           14567788899999998


Q ss_pred             CCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc--c-hhhh----------hccCChHHHHHHhccC
Q 040749          433 IDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE--N-KITI----------GLSDGIPPLVDLLQNG  498 (643)
Q Consensus       433 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~--~-k~~i----------~~~g~i~~Lv~lL~~~  498 (643)
                      .+..+...+. ..+++..|+..|.+..+.++..++.+|..++..++  . ...+          .+..-+..+|..+.++
T Consensus        87 N~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~  166 (386)
T 2bnx_A           87 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  166 (386)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             CCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC
Confidence            8877766666 56789999999988889999999988888876543  2 2221          2344677788888744


Q ss_pred             -ChhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhccCChhh
Q 040749          499 -TIRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEERNLGM  543 (643)
Q Consensus       499 -~~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~~~~~~  543 (643)
                       +.+.+..++..+-.|...+++       |..+...|..+.+-.+=...++.+
T Consensus       167 ~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L  219 (386)
T 2bnx_A          167 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDM  219 (386)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred             ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCChhH
Confidence             445554444444445555554       334566776666554433344443

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=89.28  E-value=1.5  Score=47.48  Aligned_cols=186  Identities=15%  Similarity=0.119  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcC
Q 040749          377 EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQS  456 (643)
Q Consensus       377 ~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~  456 (643)
                      .+|..|+..|..+ .+-+..      ..++..|+..+..+..+++..++-.|..+.  +--..   -.++++.++.-|.+
T Consensus       243 PVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~--DLL~~---Ld~Vv~aVL~GL~D  310 (800)
T 3oc3_A          243 PVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK--EFVED---KDGLCRKLVSLLSS  310 (800)
T ss_dssp             HHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG--GGCCC---HHHHHHHHHHHTTC
T ss_pred             ehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH--HHHHH---HHHHHHHHHhhcCC
Confidence            4677788888777 544432      334555555567778999999999998881  10011   25568888888899


Q ss_pred             CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccC-Ch-hhHHHHHHHHHHhccCCcchHHHHHcCChHHHHH
Q 040749          457 GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNG-TI-RGKKDAVTALFNLSLNQANKARAIDAGIVLPLMN  534 (643)
Q Consensus       457 ~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~-~~-~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~  534 (643)
                      .+.+++..||.+|.-++ .++.   +  ...+..+.+.|.+- +. .........|..|+..+.+.  ......||.|..
T Consensus       311 ~DDDVRAVAAetLiPIA-~p~~---l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a--~~dp~LVPRL~P  382 (800)
T 3oc3_A          311 PDEDIKLLSAELLCHFP-ITDS---L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL--SIPPERLKDIFP  382 (800)
T ss_dssp             SSHHHHHHHHHHHTTSC-CSST---H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC--CCCSGGGGGTGG
T ss_pred             cccHHHHHHHHHhhhhc-chhh---H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc--ccChHHHHHHHh
Confidence            99999999999999887 1110   0  23344455555442 22 23344455666666555321  112478899999


Q ss_pred             HhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHH-HHhcCChHHHHHHHHHH
Q 040749          535 LLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE-YIREGTPKNKECATAVL  592 (643)
Q Consensus       535 lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~-lL~~~s~~~~e~A~~~L  592 (643)
                      +|.++-.+++..++.+|..+.          ...++..+.+ +|-..++.+++.+..+.
T Consensus       383 FLRHtITSVR~AVL~TL~tfL----------~~~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          383 CFTSPVPEVRTSILNMVKNLS----------EESIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             GGTCSSHHHHHHHHHHTTTCC----------CHHHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hhcCCcHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            999998999999999987776          1123444433 44456677777776665

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=89.12  E-value=7.9  Score=41.12  Aligned_cols=131  Identities=17%  Similarity=0.162  Sum_probs=92.9

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      .....++.. .+++...++-|+..|....++-|+....     +|..++.+...+|..+|..|+..|-.+|.+ ++-..+
T Consensus        29 ~~y~~Il~~-~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki  101 (507)
T 3u0r_A           29 DAYQVILDG-VKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV  101 (507)
T ss_dssp             HHHHHHHHG-GGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH
T ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH
Confidence            344455553 3457888999999999999888876544     567899999999999999999999999988 554333


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF  511 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  511 (643)
                           .+.|+++|...++.-....-.+|..|-..+.       .+.+..|...+.++++.++..++.-|.
T Consensus       102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence                 5778999998875544444445544432211       245666666666677777777776664

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=87.73  E-value=9.5  Score=44.57  Aligned_cols=173  Identities=15%  Similarity=0.099  Sum_probs=102.8

Q ss_pred             cCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHh---ccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHH
Q 040749          455 QSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLL---QNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLP  531 (643)
Q Consensus       455 ~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL---~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~  531 (643)
                      .+.++..++.++.++..++..-..    .....++.++..+   .++++.++..++++|..++..-....... ..+++.
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~  533 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL  533 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence            445788899999999988754211    0123445555554   33467788899999988875311112222 467888


Q ss_pred             HHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCH-HHHHHH
Q 040749          532 LMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREG--TPKNKECATAVLLELGANNS-SFILAA  606 (643)
Q Consensus       532 Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~--s~~~~e~A~~~L~~L~~~~~-~~~~~~  606 (643)
                      |+..|.+  +.++..|+.+|.+++.  +.+..+..  ...+..+..++..+  +...+..+..++..+....+ +.....
T Consensus       534 l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~  609 (963)
T 2x19_B          534 VLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKN  609 (963)
T ss_dssp             HHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             HHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            8888854  7899999999999985  23333322  13344455566642  46788888888888876543 333332


Q ss_pred             HHCCcHHHHHHH----hhcC-CHHHHHHHHHHHHHH
Q 040749          607 LQYGVYEHLIQL----TEGG-TSRAQRKANALLQLI  637 (643)
Q Consensus       607 ~~~g~i~~L~~l----l~~g-~~~~k~~A~~lL~~L  637 (643)
                      .+ .+++.+...    ..+. ++..+.....++..|
T Consensus       610 ~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l  644 (963)
T 2x19_B          610 LH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLL  644 (963)
T ss_dssp             HH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            22 234444333    3333 566665544444443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=86.32  E-value=2.9  Score=44.37  Aligned_cols=120  Identities=15%  Similarity=0.169  Sum_probs=93.7

Q ss_pred             cCChhhHHHHHHHHHHhcc-CCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHH
Q 040749          497 NGTIRGKKDAVTALFNLSL-NQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVE  575 (643)
Q Consensus       497 ~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~  575 (643)
                      .|+...++.|+..|..... .++-...     ++..++.+..+.+..++..|+.-|..+|.. +...     .++..|++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~-----kiaDvL~Q  107 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLP-----RVADILTQ  107 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHH-----HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhh-----hHHHHHHH
Confidence            5678889999888887654 4444444     456789999889999999999999999987 3332     45678899


Q ss_pred             HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHH
Q 040749          576 YIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQ  635 (643)
Q Consensus       576 lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~  635 (643)
                      +|.+.++......-..|..+...++.        +.+..|+.-+.+|++.+|+++...|+
T Consensus       108 lLqtdd~~E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          108 LLQTDDSAEFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HTTCCCHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHhccchHHHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHHHHHHH
Confidence            99988888888888888888887774        46777777777788889988877664

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=85.24  E-value=20  Score=36.30  Aligned_cols=156  Identities=17%  Similarity=0.086  Sum_probs=117.2

Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCc-chHHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQA-NKARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATH  557 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~-n~~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~  557 (643)
                      +...+.+..|+..|..=+.+.++++.....++..... ++...++  ..-...|.-++.. .++++.-.+=.+|.....+
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~  153 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH  153 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHh
Confidence            3456888899999988899999999999888876433 2222221  1123333334433 5677778888888888889


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhhcCCHHHHHHHHHHH
Q 040749          558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG---VYEHLIQLTEGGTSRAQRKANALL  634 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~lL  634 (643)
                      +.....+...+.+-.+.+.+..++=.+-.-|...+..|-......+...+..+   .+...-.++.+++--+|+.+..+|
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLL  233 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  233 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            88888888888888999999888878888888888887777766666666533   567777899999999999999999


Q ss_pred             HHH
Q 040749          635 QLI  637 (643)
Q Consensus       635 ~~L  637 (643)
                      ..+
T Consensus       234 gel  236 (341)
T 1upk_A          234 GEL  236 (341)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            855

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=83.79  E-value=9.6  Score=39.59  Aligned_cols=143  Identities=15%  Similarity=0.227  Sum_probs=93.3

Q ss_pred             cCChHHHHHHhcc-----------CChhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          485 SDGIPPLVDLLQN-----------GTIRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILL  552 (643)
Q Consensus       485 ~g~i~~Lv~lL~~-----------~~~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~  552 (643)
                      .+++..|+.+|..           .+......++.||..|..+..+...++. ...+..|+..|.+..+.++..++.+|.
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~  187 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  187 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            3455666666531           1235667788899988877777777666 678899999998888999999999999


Q ss_pred             HHhCChh--h-HHHhhc----------CCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HH----HHHHHHCCcH
Q 040749          553 LLATHPE--G-RHKIGQ----------LSFIETLVEYIRE-GTPKNKECATAVLLELGANNS--SF----ILAALQYGVY  612 (643)
Q Consensus       553 ~La~~~~--~-~~~i~~----------~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~~----~~~~~~~g~i  612 (643)
                      .+|..++  | ...+.+          ..-...++..+.. .+...+..++..+-.+..+.+  ..    +..+...|..
T Consensus       188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~  267 (383)
T 3eg5_B          188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH  267 (383)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHH
T ss_pred             HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChH
Confidence            9998654  3 544433          2336667777775 345556666666656665533  22    2334467777


Q ss_pred             HHHHHHhhcCCHHHH
Q 040749          613 EHLIQLTEGGTSRAQ  627 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k  627 (643)
                      +.+-.+-..+++...
T Consensus       268 ~il~~lr~~~~~~L~  282 (383)
T 3eg5_B          268 QVLQELREIENEDMK  282 (383)
T ss_dssp             HHHHHHTTSCCHHHH
T ss_pred             HHHHHHhcCCChhHH
Confidence            766665444455443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=83.66  E-value=6.8  Score=37.62  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=87.1

Q ss_pred             hhhHHHHHHHHHHhccCCcchHHHHH-cCChHHHHHHhccCChhhHHHHHHHHHHHhCChh--h-HHHhhc---------
Q 040749          500 IRGKKDAVTALFNLSLNQANKARAID-AGIVLPLMNLLEERNLGMVDEALSILLLLATHPE--G-RHKIGQ---------  566 (643)
Q Consensus       500 ~~~~~~A~~aL~nLs~~~~n~~~lv~-~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~--~-~~~i~~---------  566 (643)
                      ......++.+|..|..+..+...++. .+++..|+..|.++...++..++.+|..+|..++  | ...+.+         
T Consensus        68 ~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~  147 (233)
T 2f31_A           68 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  147 (233)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhC
Confidence            34566788899988877777777666 6788888888988888999999999999988654  6 544433         


Q ss_pred             -CCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH--HH----HHHHHHCCcHHHHHHHhhcCCHHHHHHHH
Q 040749          567 -LSFIETLVEYIRE-GTPKNKECATAVLLELGANNS--SF----ILAALQYGVYEHLIQLTEGGTSRAQRKAN  631 (643)
Q Consensus       567 -~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~~~--~~----~~~~~~~g~i~~L~~ll~~g~~~~k~~A~  631 (643)
                       ..-...+++.+.. .+...+..++..+-.+..+.+  ..    +..+...|..+.|-.+-..+++.......
T Consensus       148 e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          148 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             TSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             CcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence             2234556666653 334555555555555655433  22    23345677777776666666776655443

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=83.45  E-value=1.7  Score=34.54  Aligned_cols=48  Identities=15%  Similarity=0.243  Sum_probs=38.6

Q ss_pred             ccccccCccccc-----Cceec--CCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          274 EFLCPITLEIMR-----DPVII--ASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       274 ~f~CpIc~~~m~-----dPv~~--~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .-.|.||.+-.-     +|.+.  .|+...||.|.+--.++++..||.|+.+...
T Consensus        16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr   70 (93)
T 1weo_A           16 GQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKR   70 (93)
T ss_dssp             SCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred             CCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCcccc
Confidence            357999998743     45554  4888999999998888999999999888764

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=83.12  E-value=14  Score=43.72  Aligned_cols=221  Identities=16%  Similarity=0.125  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCC-CCChHHHHHHHHHHHHhcC------
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLP-YPDSKILEHAVTAVLNLSI------  433 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~d~~~~~~a~~~L~nLs~------  433 (643)
                      -..+..+++.+.+++.+.|.+|-..|..+.+ ++         ++...+..+|. +.+..+|..|+.+|.|...      
T Consensus        15 ~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~-~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l   84 (1049)
T 3m1i_C           15 IALLDQVVSTFYQGSGVQQKQAQEILTKFQD-NP---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL   84 (1049)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-ST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGS
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccC
Confidence            3456666766667777777788888877753 33         35556666664 4578899999999988643      


Q ss_pred             CcchHHHHHhcCChHHHHHHhcCC-----CHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHH
Q 040749          434 DESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVT  508 (643)
Q Consensus       434 ~~~~k~~i~~~g~i~~Lv~lL~~~-----~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~  508 (643)
                      .++.+..| ....+..+...-..+     +..++...+.++..++..+...   .-++.++.|+.+++ .+...+..++.
T Consensus        85 ~~~~~~~i-r~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~---~Wp~ll~~L~~~~~-~~~~~~~~~l~  159 (1049)
T 3m1i_C           85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQ---NWPEFIPELIGSSS-SSVNVCENNMI  159 (1049)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHT-TCHHHHHHHHH
T ss_pred             CHHHHHHH-HHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHHc-cChHHHHHHHH
Confidence            23334444 222333333322111     3566777788888776543210   12578899999986 45555677777


Q ss_pred             HHHHhccC-----Cc----ch-----HHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHH
Q 040749          509 ALFNLSLN-----QA----NK-----ARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIE  571 (643)
Q Consensus       509 aL~nLs~~-----~~----n~-----~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~  571 (643)
                      +|..|+..     .+    .+     ..+..  ..++..+...+.. .+..+...++.++.+....-+. ..+.+...++
T Consensus       160 ~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~-~~~~~~~ll~  238 (1049)
T 3m1i_C          160 VLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY-RYIYETNILE  238 (1049)
T ss_dssp             HHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT-HHHHSSSHHH
T ss_pred             HHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH-HHHhhhhHHH
Confidence            77777621     11    11     11222  1122333444433 4567888899998887664332 2244456777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          572 TLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       572 ~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                      .+.+.+. .++..+..|+.+|..+...
T Consensus       239 ~l~~~~l-~~~~~~~~a~~~L~~i~~~  264 (1049)
T 3m1i_C          239 LLSTKFM-TSPDTRAITLKCLTEVSNL  264 (1049)
T ss_dssp             HHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence            7663332 3688899999999888765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=82.72  E-value=19  Score=36.48  Aligned_cols=110  Identities=16%  Similarity=0.198  Sum_probs=84.4

Q ss_pred             HHHhcCCcch-HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhc-cCChhhHHH
Q 040749          428 VLNLSIDESN-KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQ-NGTIRGKKD  505 (643)
Q Consensus       428 L~nLs~~~~~-k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~-~~~~~~~~~  505 (643)
                      |+||-.++.+ -.-++...++..+..+++-++.++.......|...|...... .+--...+|.++..+. ++++++.+.
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~-~t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALA-KTPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGG-TSCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHh-hccccccchHHHHHhccCCCcceEEe
Confidence            5566666554 778889999999999999999888888888888876433221 1112567888888885 678899999


Q ss_pred             HHHHHHHhccCCcc-hHHHHHcCChHHHHHHhcc
Q 040749          506 AVTALFNLSLNQAN-KARAIDAGIVLPLMNLLEE  538 (643)
Q Consensus       506 A~~aL~nLs~~~~n-~~~lv~~G~v~~Lv~lL~~  538 (643)
                      ..+.|.|...+... +...+..|+++.|-..+..
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            99999999877655 4557889999999888754

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=81.97  E-value=32  Score=34.89  Aligned_cols=112  Identities=13%  Similarity=0.075  Sum_probs=87.0

Q ss_pred             HHHhccCCcch-HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHh-cCChHHHHH
Q 040749          510 LFNLSLNQANK-ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIR-EGTPKNKEC  587 (643)
Q Consensus       510 L~nLs~~~~n~-~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~-~~s~~~~e~  587 (643)
                      |.||..++.|. .-++++.+|..+...+..++.++....+..|...+....-...=. ...+|-++..+. ++.+++.-.
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcceEEe
Confidence            45666666664 458999999999999999999999999999998876432221111 356788888776 567888889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC
Q 040749          588 ATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG  622 (643)
Q Consensus       588 A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g  622 (643)
                      ..+.|.++..+..-....++..|+++.|...+..-
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky  379 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY  379 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence            99999999988877777788999999999887654

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=81.82  E-value=48  Score=38.93  Aligned_cols=220  Identities=12%  Similarity=0.083  Sum_probs=129.2

Q ss_pred             HHHHHHH-HhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC---ChHHHHHHHHHHHHhcC--Cc
Q 040749          363 EIVSLVE-QLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP---DSKILEHAVTAVLNLSI--DE  435 (643)
Q Consensus       363 ~i~~Lv~-~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~---d~~~~~~a~~~L~nLs~--~~  435 (643)
                      .+...+. .+.. .+++.|.+|-..|..+-+ +++         +......+|.++   +..++-.|+.+|.+...  .+
T Consensus         7 ~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~-sp~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~   76 (980)
T 3ibv_A            7 DVENAVEAALDPSVGPIIKQQATDFIGSLRS-SST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNN   76 (980)
T ss_dssp             HHHHHHHHHHCTTSCHHHHHHHHHHHHHHHH-STT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHc-Chh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCCh
Confidence            3444553 3432 368888888888877764 343         334455666553   68888888888876543  33


Q ss_pred             c----hHHHHHhcCChHHHHHHhc-CCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCCh-hhHHHHHHH
Q 040749          436 S----NKRLIAQQGAIPAIIEILQ-SGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTI-RGKKDAVTA  509 (643)
Q Consensus       436 ~----~k~~i~~~g~i~~Lv~lL~-~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~-~~~~~A~~a  509 (643)
                      +    .+..+ ....+..+...-. .+...++...+.+|..+...+...   .-++.++.|+.++..++. .+....+++
T Consensus        77 e~~~~~~~~l-r~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~---~Wp~~i~~l~~~~~~~~~~~~~~~~Lri  152 (980)
T 3ibv_A           77 ESNLLELQMI-RDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS---NWNDFFASLQGVIAASSQSEFSNFYLKV  152 (980)
T ss_dssp             TTSHHHHHHH-HHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT---TCTTHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             hhhHHHHHHH-HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc---cCchHHHHHHHHhcCCChhHHHHHHHHH
Confidence            3    33333 2223444433110 234667788888888776432110   225788888888876544 344445555


Q ss_pred             HHHhccC----C--c-----chH----HHHHcCC----hHHHHHHhcc----CChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749          510 LFNLSLN----Q--A-----NKA----RAIDAGI----VLPLMNLLEE----RNLGMVDEALSILLLLATHPEGRHKIGQ  566 (643)
Q Consensus       510 L~nLs~~----~--~-----n~~----~lv~~G~----v~~Lv~lL~~----~~~~~~~~Al~~L~~La~~~~~~~~i~~  566 (643)
                      |..|+..    .  .     .|.    .......    ++....+|..    .++.++..++.+|......-+. ..+..
T Consensus       153 L~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~  231 (980)
T 3ibv_A          153 LLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVN  231 (980)
T ss_dssp             HHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHC
T ss_pred             HHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhhc
Confidence            5544321    0  0     111    1111121    3334444433    5677888899999888775333 34455


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                      ...++.+..++..  +..+..|+.+|..+....
T Consensus       232 ~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~  262 (980)
T 3ibv_A          232 EPCMNLLYSFLQI--EELRCAACETMTEIVNKK  262 (980)
T ss_dssp             HHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSC
T ss_pred             chHHHHHHHHcCC--hHHHHHHHHHHHHHHHcC
Confidence            6778888887754  889999999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	643
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-22
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	7e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-15
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	1e-18
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	7e-17
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-08
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	5e-07
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-16
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-09
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	5e-14
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	7e-09
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-04
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-13
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	9e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-10
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	7e-10
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	6e-07
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-05
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-04
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	7e-06
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	8e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	1e-05
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	4e-05
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	5e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.001

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 89.8 bits (222), Expect = 1e-22
 Identities = 41/74 (55%), Positives = 57/74 (77%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
            P  F CPI+LE+M+DPVI+++GQT+ER S+QKW D+ H+TCPK+++TL H  + PNY L
Sbjct: 5   FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 331 KNLILQWCEKNNFK 344
           K+LI  WCE N  +
Sbjct: 65  KSLIALWCESNGIE 78

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (216), Expect = 7e-19
 Identities = 40/185 (21%), Positives = 59/185 (31%), Gaps = 19/185 (10%)

Query: 371 LSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLN 430
           L         +A   +       P N   + + GAIP LVQLL                 
Sbjct: 364 LHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQ 423

Query: 431 LSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPP 490
               E  +                     E  E    AL  L+    N+I I   + IP 
Sbjct: 424 QQFVEGVR-------------------MEEIVEGCTGALHILARDVHNRIVIRGLNTIPL 464

Query: 491 LVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSI 550
            V LL +     ++ A   L  L+ ++         G   PL  LL  RN G+   A ++
Sbjct: 465 FVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAV 524

Query: 551 LLLLA 555
           L  ++
Sbjct: 525 LFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (188), Expect = 2e-15
 Identities = 32/168 (19%), Positives = 60/168 (35%), Gaps = 8/168 (4%)

Query: 348 KDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIP 407
           +DD+E +         I  L + L+     V  +A   +  LSK+      ++     + 
Sbjct: 9   QDDAELAT------RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVS 62

Query: 408 PLVQLLPYP-DSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSA 466
            +V+ +    D +        + NLS        I + G IPA++++L S        + 
Sbjct: 63  AIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAI 122

Query: 467 AALFSLSMLDENKITIGLSDG-IPPLVDLLQNGTIRGKKDAVTALFNL 513
             L +L +  E         G +  +V LL    ++        L  L
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 170

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.7 bits (193), Expect = 1e-18
 Identities = 22/71 (30%), Positives = 36/71 (50%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYAL 330
           IP      I+ E+MR+P I  SG T++R+ +++         P TR  L    + PN A+
Sbjct: 4   IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 331 KNLILQWCEKN 341
           K +I  +  +N
Sbjct: 64  KEVIDAFISEN 74

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.7 bits (200), Expect = 7e-17
 Identities = 53/317 (16%), Positives = 126/317 (39%), Gaps = 6/317 (1%)

Query: 332 NLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR-LLS 390
           N I      ++ +  +   S   +  ++ ++E+  + +QL+S  ++ Q  A  K R +LS
Sbjct: 46  NFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILS 105

Query: 391 KENPENRILIADCGAIPPLVQLLPY-PDSKILEHAVTAVLNL-SIDESNKRLIAQQGAIP 448
           +E+     ++   G +P LV+ +       +   A  A+ N+ S   +  +++    A+P
Sbjct: 106 REHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 165

Query: 449 AIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTIRGKKDAV 507
             I++L +GS E +E +  AL +++    + +  +   + + P++ L  +      + A 
Sbjct: 166 LFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTAT 225

Query: 508 TALFNLSLNQANKARA-IDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQ 566
             L NL   +  +    + +  +  L  L+   +   + +A   +  L+  P+   +   
Sbjct: 226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 285

Query: 567 LSFIETLV-EYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSR 625
              I   + E +   +   +  A   +  +   N       +  GV   L  L       
Sbjct: 286 DVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKEN 345

Query: 626 AQRKANALLQLISKSEH 642
            +++A   +  I+    
Sbjct: 346 IKKEACWTISNITAGNT 362

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.9 bits (128), Expect = 3e-08
 Identities = 42/273 (15%), Positives = 97/273 (35%), Gaps = 4/273 (1%)

Query: 372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNL 431
            +    +Q EA   +  ++        ++ D  A+P  +QLL     ++ E A+ A+ N+
Sbjct: 130 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 189

Query: 432 S-IDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDG-IP 489
           +      +  + Q  A+  I+ +  S        +   L +L    + +    +    +P
Sbjct: 190 AGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP 249

Query: 490 PLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEA-- 547
            L  L+ +       DA  A+  LS       +A+    +   +  L      +V     
Sbjct: 250 TLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPAL 309

Query: 548 LSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAAL 607
            ++  ++  +      +     +  L   +       K+ A   +  + A N+  I A +
Sbjct: 310 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI 369

Query: 608 QYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
              +   L++L E    + +++A   +   S  
Sbjct: 370 DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 402

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 5e-07
 Identities = 77/463 (16%), Positives = 168/463 (36%), Gaps = 41/463 (8%)

Query: 146 SDEVKEQVELMCLQLRRAK--------RRTDTQDIELAMDMMVVFSKNEDRNADIAIVER 197
           +DE++ + +   ++LR+AK        R           D     S + D+     + + 
Sbjct: 18  ADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQE 77

Query: 198 LAKKINLHTTEDLKYETIAIRNLVKERGSQSSESIQQMID--LLNKFKQVAGMEITNVL- 254
           L +      ++D++ +  A     +    +    I  +I   ++ +  +        +L 
Sbjct: 78  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQ 137

Query: 255 ------------DDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQ 302
                             K++  + ++ +  + L   ++E+ ++  I A G      +  
Sbjct: 138 LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEV-KEQAIWALGNVAGDSTDY 196

Query: 303 KWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKE 362
           + +             L   +      ++            K P+ D S  S+       
Sbjct: 197 RDYVLQCNAMEPI---LGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA------ 247

Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
            + +L + + S   E   +A   I  LS    E    + D      LV+LL +  + +  
Sbjct: 248 -LPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQT 306

Query: 423 HAVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKI 480
            A+ AV N+        +++   G +PA+  +L S     ++ +   + +++  + E   
Sbjct: 307 PALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQ 366

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAI----DAGIVLPLMNLL 536
            +  ++ IPPLV LL+    + KK+A  A+ N S     +   I      G + PL +LL
Sbjct: 367 AVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLL 426

Query: 537 EERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE 579
           E  +  +++  L  L  +    E   K  +   I    ++I +
Sbjct: 427 EIADNRIIEVTLDALENILKMGE-ADKEARGLNINENADFIEK 468

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 372 SSSKLEVQKEAVRKIRLLSK---ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAV 428
             ++ + +KEA   I   S    + P+    +   G I PL  LL   D++I+E  + A+
Sbjct: 382 EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 441

Query: 429 LNL------------SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAAL 469
            N+                 N   I + G +  I    Q+ + +  E +   +
Sbjct: 442 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (197), Expect = 1e-16
 Identities = 35/247 (14%), Positives = 70/247 (28%), Gaps = 17/247 (6%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEH 423
           I   V+ LSS   + Q      I+    ++   +  +   G I  LV LL  P+  + + 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 424 AVTAVLNLSIDES-NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI 482
           A  A+ NL    + NK    +Q  I   + +L+       +     L       +     
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 483 GLSDGIPPLVDLL----------------QNGTIRGKKDAVTALFNLSLNQANKARAIDA 526
            ++D +P L D +                +        +A   L NLS   A +    + 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 527 GIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKE 586
             ++  +    +  +         +                       +          E
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTE 243

Query: 587 CATAVLL 593
            ++    
Sbjct: 244 KSSTGCF 250

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 1e-12
 Identities = 17/130 (13%), Positives = 53/130 (40%), Gaps = 9/130 (6%)

Query: 396 NRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQ 455
           ++++      +P + +LL   +S ++    + + N+S      R++  Q   P +  +L 
Sbjct: 323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQV-FPEVTRLLT 381

Query: 456 SG------STEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQN-GTIRGKKDAV 507
           S       S +   ++   + +L     +       S  +  +++L ++  + +  + A 
Sbjct: 382 SHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAAR 441

Query: 508 TALFNLSLNQ 517
             L ++  ++
Sbjct: 442 LLLSDMWSSK 451

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (135), Expect = 4e-09
 Identities = 39/366 (10%), Positives = 97/366 (26%), Gaps = 22/366 (6%)

Query: 248 MEITNVLDDPIVPKMLGKSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS 307
           + +     +  + K L   L  +   + L    +      +       F          S
Sbjct: 92  VSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMS 151

Query: 308 NHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFKLPKKDDSETSECTAEQKEEIVSL 367
                P+            + A                           +    + + + 
Sbjct: 152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC 211

Query: 368 VEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTA 427
           +  L +    +  E   + R L           +  G        +      +  +    
Sbjct: 212 MCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKM------MNNNYDCP 265

Query: 428 VLNLSIDESNKRLIAQQGAIPAIIEILQSGSTE-------ARENSAAALFSLSMLDENKI 480
           +     +      +    AI   + ++     +           +  A   L     +++
Sbjct: 266 LPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQL 325

Query: 481 TIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN 540
                 G+P +  LLQ+G     +   + L N+S +       +   +   +  LL    
Sbjct: 326 IGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHR-VMGNQVFPEVTRLLTSHT 384

Query: 541 LGMVD------EALSILL-LLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVL 592
               +       A   +  L+A+ P+   +    S +  ++   R   +PK  E A  +L
Sbjct: 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444

Query: 593 LELGAN 598
            ++ ++
Sbjct: 445 SDMWSS 450

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (110), Expect = 5e-06
 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 1/80 (1%)

Query: 363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDS-KIL 421
            +++     +S+  ++   A   +R L    P+          +  ++ L     S K  
Sbjct: 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAA 437

Query: 422 EHAVTAVLNLSIDESNKRLI 441
           E A   + ++   +  + ++
Sbjct: 438 EAARLLLSDMWSSKELQGVL 457

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (175), Expect = 5e-14
 Identities = 43/163 (26%), Positives = 67/163 (41%), Gaps = 6/163 (3%)

Query: 364 IVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIADCGAIPPLVQLLPY-PDSKIL 421
           +  +V+ ++S+ LE Q +A +  R LLS+E       I   G IP  V  L     S I 
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 422 EHAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSL-SMLDENK 479
             +  A+ N+ S      + +   GAIPA I +L S      E +  AL ++       +
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 480 ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKAR 522
             +     I PL+ LL    +         L NL+   +N  R
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGY--LRNLTWTLSNLCR 175

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.0 bits (133), Expect = 7e-09
 Identities = 33/194 (17%), Positives = 58/194 (29%), Gaps = 18/194 (9%)

Query: 284 MRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF 343
           +  P + A G        Q     +          L +            +         
Sbjct: 246 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ- 304

Query: 344 KLPKKDDSETSECTAEQKEEIVSLVEQLSSSKLEVQKEAVRKIR-LLSKENPENRILIAD 402
                               +  LV  LS +  + QKEA   I    S    E  + +  
Sbjct: 305 ---------DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH 355

Query: 403 CGAIPPLVQLLPYPDSKILEHAVTAVLNL-------SIDESNKRLIAQQGAIPAIIEILQ 455
           CG I PL+ LL   D+KI++  + A+ N+          E    +I + G +  I  + +
Sbjct: 356 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQR 415

Query: 456 SGSTEARENSAAAL 469
             +    + S   +
Sbjct: 416 HENESVYKASLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.1 bits (110), Expect = 4e-06
 Identities = 51/287 (17%), Positives = 101/287 (35%), Gaps = 10/287 (3%)

Query: 364 IVSLVEQLSSSKL-EVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILE 422
           I   V  L  +    +Q E+   +  ++    E    + D GAIP  + LL  P + I E
Sbjct: 58  IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISE 117

Query: 423 HAVTAVLNL-SIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAA--ALFSLSMLDENK 479
            AV A+ N+     + + L+ + GAI  ++ +L                 ++LS L  NK
Sbjct: 118 QAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK 177

Query: 480 IT----IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNL 535
                   +   +P LV LL +       D+  A+  L+     +   +    V+P +  
Sbjct: 178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK 237

Query: 536 LEERNLGMVDEALSILLL--LATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLL 593
           L       +       +   +    E   K+     +      +       ++ AT  + 
Sbjct: 238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 297

Query: 594 ELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS 640
            + A     I   + +G+   L+ +      + Q++A   +   +  
Sbjct: 298 NITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 344

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (94), Expect = 4e-04
 Identities = 21/128 (16%), Positives = 53/128 (41%), Gaps = 3/128 (2%)

Query: 430 NLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGI 488
            ++  +   + +   GA+     +L +  T  ++ +   + +++    +    +     +
Sbjct: 257 IVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316

Query: 489 PPLVDLLQNGTIRGKKDAVTALFNLSL--NQANKARAIDAGIVLPLMNLLEERNLGMVDE 546
           P LV +L     + +K+A  A+ N +           +  GI+ PLMNLL  ++  ++  
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376

Query: 547 ALSILLLL 554
            L  +  +
Sbjct: 377 ILDAISNI 384

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 271 IPHEFLCPITLEIMRDPVIIASGQ-TFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
              EFL PI   +M DPV++ S + T +R ++ +   S+  T P  R  L    I PN  
Sbjct: 19  ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQIRPNTE 77

Query: 330 LKNLILQWCEKNN 342
           LK  I +W  +  
Sbjct: 78  LKEKIQRWLAERK 90

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 9e-13
 Identities = 13/72 (18%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 265 KSLSLVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDS--NHRTCPKTRQTLAHL 322
           +++   +     CPI LE++++PV       F +  + K  +       CP  +  +   
Sbjct: 12  QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

Query: 323 SIAPNYALKNLI 334
           S+  +     L+
Sbjct: 72  SLQESTRFSQLV 83

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 276 LCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319
           LC I  E  +D  I   G       +  W +S  + CP  R  +
Sbjct: 25  LCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (129), Expect = 7e-10
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 265 KSLSLVIPHEFL----CPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319
           K L++  P  F+    C I   I+ DPV  +    F R  + +        CP  R   
Sbjct: 10  KLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLV-QLLPYPDS 418
            +    +  E   ++  + ++ A+  +  L  EN +N         +  LV + L    +
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAA 73

Query: 419 KILEHAVTAVLNLS-IDESNKRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLD 476
            +   A   +   S    + +  +   GA+  ++ +L        R  +  A+  L    
Sbjct: 74  GLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQ 133

Query: 477 ENKITIGLSDGIPPLVDLLQNGT--IRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMN 534
           E  +   L      ++             K A      L  +  +K      G+V  L+ 
Sbjct: 134 EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVA 193

Query: 535 LLEERNLGMVDEALSILLLLATH-PEGRHKIGQLSFI-ETLVEYIREGTPKNKEC 587
           L+   +    +  L  L  L T  P+G  +  +     E L+ +  +   +++E 
Sbjct: 194 LVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEY 248

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 33/222 (14%), Positives = 72/222 (32%), Gaps = 5/222 (2%)

Query: 395 ENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE-I 453
           ++ + +      P   +     D +  E A+  + +L  +  N     Q   +  ++   
Sbjct: 8   KSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 67

Query: 454 LQSGSTEARENSAAALFSLSMLDENKITIGL-SDGIPPLVDLLQNGT-IRGKKDAVTALF 511
           L++G+   R  +A  + + S          L    +  L+ LL        +  A+ A+ 
Sbjct: 68  LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAIS 127

Query: 512 NLSLNQANKARAIDAGIVLPLMNLLEERN--LGMVDEALSILLLLATHPEGRHKIGQLSF 569
            L   Q              ++    ++      V  A  +  LL  HPE +  +  +  
Sbjct: 128 CLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM 187

Query: 570 IETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGV 611
           ++ LV  +R       E     L  L  +    +    +  +
Sbjct: 188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPEL 229

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 37/205 (18%), Positives = 66/205 (32%), Gaps = 5/205 (2%)

Query: 443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRG 502
            Q   P   E  Q+   + RE +   L  L    +N        G+  LV         G
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 74

Query: 503 -KKDAVTALFNLS-LNQANKARAIDAGIVLPLMNLLEERNLGMVDE--ALSILLLLATHP 558
            +  A   +   S    A + + +  G +  L+ LL+      V      +I  L+    
Sbjct: 75  LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 134

Query: 559 EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQL 618
            G  +  +L     L+  +++   K K  +  +L  L   +          G+ + L+ L
Sbjct: 135 AGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVAL 194

Query: 619 TEGGTSRAQRK-ANALLQLISKSEH 642
                S        AL  L++    
Sbjct: 195 VRTEHSPFHEHVLGALCSLVTDFPQ 219

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 7e-06
 Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 5/47 (10%)

Query: 274 EFL-CPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319
           +FL C       + P ++    T     ++         CP  +   
Sbjct: 5   QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPW 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 8e-06
 Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 24/82 (29%)

Query: 274 EFLCPITLEIMRDP-----VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNY 328
           +  CP              ++   G T     V   F      CP+    L         
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL--------- 53

Query: 329 ALKNLILQWCEKNNFKLPKKDD 350
                      K+NF++   +D
Sbjct: 54  ----------RKSNFRVQLFED 65

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 276 LCPITLEIMRDPVIIA-SGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP 326
           LC I+ ++ R PV+   S   FE+  ++++        P T + L+   I  
Sbjct: 2   LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGN-DPITNEPLSIEEIVE 52

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)

Query: 277 CPITLEIMRDPVIIAS-GQTFERESVQKWFDSNHRTCPKTRQTL 319
           CPI LE   +  +       F    + +W    + TCP  +  +
Sbjct: 8   CPICLEDPSNYSMALPCLHAFCYVCITRWI-RQNPTCPLCKVPV 50

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (94), Expect = 4e-05
 Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 5/83 (6%)

Query: 271 IPHEFLCPITLEIMRDP-VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYA 329
           +     C     I+R+P  +      F    V     +    C           +  N  
Sbjct: 19  LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINRQ 75

Query: 330 LKNLILQWCEKNNFKLPKKDDSE 352
           L ++I Q C K    L   + S+
Sbjct: 76  LDSMI-QLCSKLRNLLHDNELSD 97

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 6e-04
 Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 4/47 (8%)

Query: 277 CPITLEIMRD----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTL 319
           CP+ +E +            G    R    +     +  CP  R+  
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 29/261 (11%), Positives = 80/261 (30%), Gaps = 20/261 (7%)

Query: 359 EQKEEIVS-LVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPD 417
           + + ++V  +++ L     EVQ  AV+ +  L  +  E ++       +  L   +    
Sbjct: 41  DSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE----TIVDTLCTNMLSDK 96

Query: 418 SKILEHAVTA----VLNLSIDESNKRLIAQQGAIPAIIEILQSG-----STEARENSAAA 468
            ++ + +       +  L    S   L A       I   L S          +  +   
Sbjct: 97  EQLRDISSIGLKTVIGELPPASSGSALAAN--VCKKITGRLTSAIAKQEDVSVQLEALDI 154

Query: 469 LFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGI 528
           +  +       +       +  L+  L +  +  +K  + AL +L     +    +   +
Sbjct: 155 MADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLV---MSCGNIVFVDL 211

Query: 529 VLPLMN-LLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKEC 587
           +  L++ L +  ++      +  +  ++     R        I  +V++      + +E 
Sbjct: 212 IEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREY 271

Query: 588 ATAVLLELGANNSSFILAALQ 608
                          +   + 
Sbjct: 272 CIQAFESFVRRCPKEVYPHVS 292

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	643
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.9
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.87
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.84
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.83
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.76
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.74
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.73
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.45
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.41
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.4
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.34
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.02
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.02
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	98.87
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.75
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.72
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.67
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.59
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.57
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.46
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.44
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.43
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.27
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.21
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.2
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.12
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.02
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.99
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.93
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.9
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.84
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.83
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.83
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.75
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.66
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.53
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.34
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.09
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.0
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.0
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.65
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	95.13
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.5
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.75
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	89.27
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	80.71

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=4e-22  Score=217.99  Aligned_cols=280  Identities=19%  Similarity=0.173  Sum_probs=251.8

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC-cch
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSID-ESN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~-~~~  437 (643)
                      ..+.++.|++.|.+ .+.+.|..|++.|.+++..++.....+.+.|++|.|+.+|.+++.+++..|+++|+|++.+ +..
T Consensus       117 ~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~  196 (503)
T d1wa5b_         117 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY  196 (503)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHH
Confidence            45789999999985 5788999999999999988888888999999999999999999999999999999999985 567


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhh-hhccCChHHHHHHhccCChhhHHHHHHHHHHhccC
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKIT-IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~-i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~  516 (643)
                      +..+...|+++.++.++.+.+..++.+++++|.+++........ ....+++|.|+.++.+++......++++|.+|+..
T Consensus       197 r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~  276 (503)
T d1wa5b_         197 RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG  276 (503)
T ss_dssp             HHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccC
Confidence            88888999999999999999999999999999999976544333 34478999999999999999999999999999986


Q ss_pred             Ccc-hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHH
Q 040749          517 QAN-KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLE  594 (643)
Q Consensus       517 ~~n-~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~  594 (643)
                      ..+ ...+++.|+++.++.++.+++..+...|+.+|.+++... .....+.+.|+++.+..++.+.++.++..++++|.+
T Consensus       277 ~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~n  356 (503)
T d1wa5b_         277 PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISN  356 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            655 456889999999999999999999999999999998754 455567788999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          595 LGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       595 L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++.+++.....+.+.|+++.++.++.+++.+++..|.++|.++..
T Consensus       357 l~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         357 ITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  401 (503)
T ss_dssp             HTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHh
Confidence            999999888889999999999999999999999999999998864

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-22  Score=220.35  Aligned_cols=275  Identities=22%  Similarity=0.270  Sum_probs=245.3

Q ss_pred             HHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc-hH
Q 040749          361 KEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES-NK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~-~k  438 (643)
                      .+.++.++..|.+ .+.+.+..|+..|..++ .+++++..+++.|++|.|+.+|++++++++..|+++|.|++.+.+ .+
T Consensus        58 ~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~  136 (529)
T d1jdha_          58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK  136 (529)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred             hhHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-CCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhh
Confidence            4679999999974 67899999999999999 578999999999999999999999999999999999999998655 56


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccC-ChhhHHHHHHHHHHhccC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNG-TIRGKKDAVTALFNLSLN  516 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~-~~~~~~~A~~aL~nLs~~  516 (643)
                      ..+.+.|+|+.|+.+|++++++++..++.+|.+++..+ +++..+...|+++.|+.++.+. ....+..++.++.|++.+
T Consensus       137 ~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~  216 (529)
T d1jdha_         137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC  216 (529)
T ss_dssp             HHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc
Confidence            77779999999999999999999999999999998654 5666777899999999999765 467888999999999999


Q ss_pred             CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHh
Q 040749          517 QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELG  596 (643)
Q Consensus       517 ~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~  596 (643)
                      ++++..+++.|+++.|+.++.+++..+...++++|.+++.....  .....|+++.|++++.++++..++.|+.+|.+++
T Consensus       217 ~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~--~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~  294 (529)
T d1jdha_         217 SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT  294 (529)
T ss_dssp             TTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             ccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc--hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999764432  2334588999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHCCcHHHHHHHhh--cCCHHHHHHHHHHHHHHH
Q 040749          597 ANNSSFILAALQYGVYEHLIQLTE--GGTSRAQRKANALLQLIS  638 (643)
Q Consensus       597 ~~~~~~~~~~~~~g~i~~L~~ll~--~g~~~~k~~A~~lL~~L~  638 (643)
                      .+++.....+.+.|+++.|+.++.  ++.+.+++.|...|+++.
T Consensus       295 ~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~  338 (529)
T d1jdha_         295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT  338 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhccc
Confidence            999999899999999999998874  456888999999999886

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=6.3e-23  Score=225.74  Aligned_cols=275  Identities=18%  Similarity=0.193  Sum_probs=241.8

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh-cCCcHHHHHhCCC-CChHHHHHHHHHHHHhcCCcchH
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD-CGAIPPLVQLLPY-PDSKILEHAVTAVLNLSIDESNK  438 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~-~d~~~~~~a~~~L~nLs~~~~~k  438 (643)
                      ...+|.|+++|++.+..++..|+..+..++++ ...|..++. .|+++.|+.+|++ ++.++++.|+.+|.+++.+++++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~   94 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL   94 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhH
Confidence            46799999999999999999999999999965 455555554 5789999999975 57899999999999999999999


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ..|++.|+++.|+.+|++++++++.+|+++|++|+.+.+ .+..+...|+|+.|+.+|++++..++..++.+|.+|+..+
T Consensus        95 ~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          95 LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhh
Confidence            999999999999999999999999999999999997655 5566778999999999999999999999999999999754


Q ss_pred             -cchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          518 -ANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       518 -~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                       +++..+++.|+++.|+.++.. ....+...++.++.+++.+++++..+.+.|+++.|+.++.++++..+.+|+++|.++
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~l  254 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhc
Confidence             456668889999999999976 556788999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          596 GANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       596 ~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .......   ....|+++.|+.++.++++.++..|..+|.++..
T Consensus       255 s~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         255 SDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cccccch---hhhhhcchhhhhhcccccHHHHHHHHHHHHhhcc
Confidence            7544321   1124789999999999999999999999999863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-21  Score=208.10  Aligned_cols=281  Identities=20%  Similarity=0.243  Sum_probs=247.4

Q ss_pred             hHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749          360 QKEEIVSLVEQLSS-SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN  437 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s-~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~  437 (643)
                      ..+.++.|++.|++ .++++|..|++.|.+++..+++.+..+.+.|++|.|+.+|.+++..+++.|+++|.|++.+. ..
T Consensus        54 ~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~  133 (434)
T d1q1sc_          54 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF  133 (434)
T ss_dssp             HTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHH
Confidence            34789999999974 56889999999999999888899999999999999999999999999999999999999865 45


Q ss_pred             HHHHHhcCChHHHHHHhcCCC-----HHHHHHHHHHHHhccccccchhhh-hccCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          438 KRLIAQQGAIPAIIEILQSGS-----TEARENSAAALFSLSMLDENKITI-GLSDGIPPLVDLLQNGTIRGKKDAVTALF  511 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~-----~e~~~~Aa~~L~~Ls~~~~~k~~i-~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  511 (643)
                      +..+.+.|+++.++.++...+     ......+++++.+++........+ ...++++.|+.++.++++..+..|+++|.
T Consensus       134 ~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~  213 (434)
T d1q1sc_         134 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS  213 (434)
T ss_dssp             HHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhc
Confidence            777889999999999997653     455677888899988765443333 34788999999999999999999999999


Q ss_pred             HhccCCcchH-HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749          512 NLSLNQANKA-RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       512 nLs~~~~n~~-~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      +|+..+.... .+...|+++.|++++.+++..++..|+.+|.+++. +++.+..+.+.|+++.++.++.+.++.++..|+
T Consensus       214 ~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~  293 (434)
T d1q1sc_         214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT  293 (434)
T ss_dssp             HHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred             ccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHH
Confidence            9998766544 45679999999999999999999999999999987 456678888999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ++|.+++.++......+.+.|+++.++.++.++++.++..|.++|.++..+
T Consensus       294 ~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~  344 (434)
T d1q1sc_         294 WTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG  344 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhc
Confidence            999999998888888889999999999999999999999999999988653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.3e-21  Score=206.64  Aligned_cols=280  Identities=19%  Similarity=0.182  Sum_probs=241.5

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCch-hHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCC-cch
Q 040749          361 KEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPE-NRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSID-ESN  437 (643)
Q Consensus       361 ~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~-~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~-~~~  437 (643)
                      ..+++.+++.|.|++++.|.+|+..++++...+.. ....+.+.|++|.|+++|++. ++++|..|+++|.+++.. ++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            35799999999999999999999999988643322 356788999999999999754 678999999999999875 466


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccc-cchhhhhccCChHHHHHHhccCCh-----hhHHHHHHHHH
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLD-ENKITIGLSDGIPPLVDLLQNGTI-----RGKKDAVTALF  511 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~-~~k~~i~~~g~i~~Lv~lL~~~~~-----~~~~~A~~aL~  511 (643)
                      +..+++.|+++.++.+|.+++.++++.|+++|.+++.+. ..+..+...|+++.|+.++...+.     .....+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            888889999999999999999999999999999998764 567778889999999999976543     34566788899


Q ss_pred             HhccCCcchH-HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCCh-hhHHHhhcCCcHHHHHHHHhcCChHHHHHHH
Q 040749          512 NLSLNQANKA-RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       512 nLs~~~~n~~-~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      +++....... .....++++.|+.++.++++.++..++++|.+++.+. +....+...|+++.+++++.++++..+..|+
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al  251 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  251 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchh
Confidence            9987654433 3456788999999999999999999999999999865 4556667889999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          590 AVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       590 ~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      .+|.+++.+++.....+.+.|+++.|..++.+.++.+++.|..+|.++...
T Consensus       252 ~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~  302 (434)
T d1q1sc_         252 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAG  302 (434)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccc
Confidence            999999998988888899999999999999999999999999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-21  Score=205.48  Aligned_cols=280  Identities=21%  Similarity=0.236  Sum_probs=230.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLI  441 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~i  441 (643)
                      .+|.||++|+++++++|..|++.|.+++.+++++|..+.+.|+||.|+++|++++++++..|+++|.||+. +++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999996 56789999


Q ss_pred             HhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhh-------------------------------------
Q 040749          442 AQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIG-------------------------------------  483 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~-------------------------------------  483 (643)
                      .+.|+++.++.++.+ .+++++..|+++|.+++..+..+....                                     
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            999999999998865 578999999999999986543221100                                     


Q ss_pred             --------------------ccCChHHHHHHhccC---------------------------------------------
Q 040749          484 --------------------LSDGIPPLVDLLQNG---------------------------------------------  498 (643)
Q Consensus       484 --------------------~~g~i~~Lv~lL~~~---------------------------------------------  498 (643)
                                          ..|+++.|+.++.+.                                             
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence                                035567777665311                                             


Q ss_pred             ------------------------------------------------------ChhhHHHHHHHHHHhccCCcc-----
Q 040749          499 ------------------------------------------------------TIRGKKDAVTALFNLSLNQAN-----  519 (643)
Q Consensus       499 ------------------------------------------------------~~~~~~~A~~aL~nLs~~~~n-----  519 (643)
                                                                            ++..+..+..++.+++.....     
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                                                  011122344556666544332     


Q ss_pred             -hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcC------ChHHHHHHHHHH
Q 040749          520 -KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREG------TPKNKECATAVL  592 (643)
Q Consensus       520 -~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~------s~~~~e~A~~~L  592 (643)
                       +..+.+.|+++.|+.++.++++.++..++.+|.+|+.+++++..+.+ ++++.++.++...      ++.++..|+.+|
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~-~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L  401 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN-QVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH-HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH-hhHHHHHHHHhccccCcCCcHHHHHHHHHHH
Confidence             22344689999999999999999999999999999999999888765 6899999988642      356899999999


Q ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhhcC-CHHHHHHHHHHHHHHHhhccC
Q 040749          593 LELGANNSSFILAALQYGVYEHLIQLTEGG-TSRAQRKANALLQLISKSEHL  643 (643)
Q Consensus       593 ~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g-~~~~k~~A~~lL~~L~~~~~~  643 (643)
                      .+|+..+++.+..+.+.|+++.|+.++.+. ++.+++.|..+|.+|..+.++
T Consensus       402 ~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            999999999999999999999999999764 789999999999999776653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=9.6e-21  Score=206.85  Aligned_cols=279  Identities=18%  Similarity=0.193  Sum_probs=247.7

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcch-H
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESN-K  438 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~-k  438 (643)
                      +.+.++.++..|.+++.+++..|++.|.+++.+++.+|..+.+.|+++.|+.++.+.+..++..++++|.|++.+... .
T Consensus       160 ~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~  239 (503)
T d1wa5b_         160 DADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP  239 (503)
T ss_dssp             HTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC
T ss_pred             hCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccch
Confidence            456799999999999999999999999999999999999999999999999999999999999999999999976543 3


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCC
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQ  517 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~  517 (643)
                      ......++++.++.++.+++++++..++++|.+|+..+. ....+.+.|+++.++.++.+++..++..|+.+|.|++...
T Consensus       240 ~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~  319 (503)
T d1wa5b_         240 DWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN  319 (503)
T ss_dssp             CHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHH
Confidence            334457899999999999999999999999999986554 4466778999999999999999999999999999999876


Q ss_pred             cchH-HHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHH
Q 040749          518 ANKA-RAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLEL  595 (643)
Q Consensus       518 ~n~~-~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L  595 (643)
                      +... .+++.|+++.|..++.++++.++..++++|.|++. +++....+.+.|+++.++.++.++++.++..|+++|.++
T Consensus       320 ~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl  399 (503)
T d1wa5b_         320 DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNA  399 (503)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHH
Confidence            6544 46789999999999999999999999999999977 567788888999999999999999999999999999999


Q ss_pred             hcC---CHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          596 GAN---NSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       596 ~~~---~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      +.+   .++....+.+.|+++.|+.++...++++...+...|.++-
T Consensus       400 ~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll  445 (503)
T d1wa5b_         400 SSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL  445 (503)
T ss_dssp             HHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            864   3456677889999999999999999999888888777664

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.84  E-value=5.8e-22  Score=159.51  Aligned_cols=76  Identities=54%  Similarity=1.112  Sum_probs=72.4

Q ss_pred             CCCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          269 LVIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       269 ~~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      +++|++|.||||+++|+|||+++|||+||+.||++|+..+..+||.|+.++...++.||..|+++|++|+.+||++
T Consensus         3 peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~~e   78 (78)
T d1t1ha_           3 PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE   78 (78)
T ss_dssp             CCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSCCC
T ss_pred             CCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhCcC
Confidence            4789999999999999999999999999999999999987778999999999999999999999999999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.5e-21  Score=157.88  Aligned_cols=75  Identities=29%  Similarity=0.519  Sum_probs=71.9

Q ss_pred             CCCCccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhcccc
Q 040749          270 VIPHEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNFK  344 (643)
Q Consensus       270 ~~~~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~~  344 (643)
                      ++|++|.||||+++|+|||+++||||||+.||++|+..++.+||.|++++...++.||..|+++|++|+.+||+.
T Consensus         3 eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~~   77 (80)
T d2c2la2           3 DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGWV   77 (80)
T ss_dssp             CCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSCS
T ss_pred             CCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCCc
Confidence            689999999999999999999999999999999999988889999999999999999999999999999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.3e-19  Score=149.09  Aligned_cols=76  Identities=32%  Similarity=0.446  Sum_probs=69.1

Q ss_pred             CCCCCCCccccccCcccccCceecCCC-CccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHHhccc
Q 040749          267 LSLVIPHEFLCPITLEIMRDPVIIASG-QTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCEKNNF  343 (643)
Q Consensus       267 ~~~~~~~~f~CpIc~~~m~dPv~~~cg-~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~~~~~  343 (643)
                      ...++|++|.||||+++|+|||+++|| |||||.||.+|+..+ .+||.|++++...+++||..|+..|+.|+.++..
T Consensus        15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~-~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~~   91 (98)
T d1wgma_          15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSD-QTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTS-CBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhc-CCcccccccccchhhcchHHHHHHHHHHHHHHHH
Confidence            345799999999999999999999876 589999999999874 5899999999999999999999999999998764

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.8e-17  Score=160.77  Aligned_cols=191  Identities=18%  Similarity=0.198  Sum_probs=168.5

Q ss_pred             CHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHH-hCCCCChHHHHHHHHHHHHhcCCc-chHHHHHhcCChHHHHH
Q 040749          375 KLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQ-LLPYPDSKILEHAVTAVLNLSIDE-SNKRLIAQQGAIPAIIE  452 (643)
Q Consensus       375 ~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~-lL~~~d~~~~~~a~~~L~nLs~~~-~~k~~i~~~g~i~~Lv~  452 (643)
                      +.+.+..|+..|..++ ++.+++..+...|+++.|+. +|.+++++++..|+.+|.+++.++ ..+..+.+.|+++.|+.
T Consensus        30 ~~~~~~~Al~~L~~L~-~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~  108 (264)
T d1xqra1          30 DQQEREGALELLADLC-ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR  108 (264)
T ss_dssp             HHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH-cCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHH
Confidence            4677889999999999 67889999999999999885 788999999999999999999854 56788889999999999


Q ss_pred             HhcC-CCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc-CCcchHHHHHcCCh
Q 040749          453 ILQS-GSTEARENSAAALFSLSML-DENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-NQANKARAIDAGIV  529 (643)
Q Consensus       453 lL~~-~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-~~~n~~~lv~~G~v  529 (643)
                      +|.+ .+++++..++++|.+++.. +.++..+...|+++.|+.++++++..++..++.+|.||+. +++++..+++.|++
T Consensus       109 lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v  188 (264)
T d1xqra1         109 LLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV  188 (264)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHH
T ss_pred             HhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhH
Confidence            9974 5789999999999999865 4567778889999999999999999999999999999986 56778889999999


Q ss_pred             HHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhc
Q 040749          530 LPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQ  566 (643)
Q Consensus       530 ~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~  566 (643)
                      +.|+.+|.++++.+++.|+.+|.+|+. ++..+..+..
T Consensus       189 ~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         189 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999987 4555555544

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.5e-17  Score=161.89  Aligned_cols=194  Identities=16%  Similarity=0.131  Sum_probs=173.8

Q ss_pred             CCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHH-HhcCCCHHHHHHHHHHHHhcccc-ccchhhhhccCChHHHH
Q 040749          415 YPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIE-ILQSGSTEARENSAAALFSLSML-DENKITIGLSDGIPPLV  492 (643)
Q Consensus       415 ~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~-lL~~~~~e~~~~Aa~~L~~Ls~~-~~~k~~i~~~g~i~~Lv  492 (643)
                      ..+.+.+..|+.+|.+|+.+.+++..+...|++++++. ++++++++++..|+.+|.+++.+ +..+..+.+.|++|.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            44678899999999999998899999999999999986 77888999999999999999975 56777888899999999


Q ss_pred             HHhcc-CChhhHHHHHHHHHHhccCCc-chHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhC-ChhhHHHhhcCCc
Q 040749          493 DLLQN-GTIRGKKDAVTALFNLSLNQA-NKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLAT-HPEGRHKIGQLSF  569 (643)
Q Consensus       493 ~lL~~-~~~~~~~~A~~aL~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~  569 (643)
                      .++.+ .++.++..|+++|.+|+.+.+ ++..++..|+++.|++++.+++..++..++.+|.+++. +++.+..+.+.|+
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            99965 568899999999999997554 56668899999999999999999999999999999976 6888999999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040749          570 IETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQ  608 (643)
Q Consensus       570 i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~  608 (643)
                      ++.|+.++.++++.+++.|+.+|.+|+..++.....+..
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999988877777654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=8.6e-16  Score=161.35  Aligned_cols=238  Identities=24%  Similarity=0.302  Sum_probs=186.7

Q ss_pred             CCcHHHHHhCCCCChHHHHHHHHHHHHhcC-CcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccc-cccchhh
Q 040749          404 GAIPPLVQLLPYPDSKILEHAVTAVLNLSI-DESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSM-LDENKIT  481 (643)
Q Consensus       404 g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~-~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~-~~~~k~~  481 (643)
                      +.||.|+++|+++++++|..|+++|.||+. ++++|..+.+.|+||.|+++|++++++++..|+++|.+|+. +++++..
T Consensus         2 ~~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           2 LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CCHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CCHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            468999999999999999999999999997 67889999999999999999999999999999999999995 5678889


Q ss_pred             hhccCChHHHHHHhcc-CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHh---------------ccCChhhHH
Q 040749          482 IGLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLL---------------EERNLGMVD  545 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL---------------~~~~~~~~~  545 (643)
                      +.+.|+++.|+.++.+ .+...+..|+.+|.+++.....+......|+.+.+..++               ...+..++.
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  161 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFF  161 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHH
Confidence            9999999999999865 577899999999999999888877777655444433332               124567788


Q ss_pred             HHHHHHHHHhCChhhHHHhhc-CCcHHHHHHHHh----------------------------------------------
Q 040749          546 EALSILLLLATHPEGRHKIGQ-LSFIETLVEYIR----------------------------------------------  578 (643)
Q Consensus       546 ~Al~~L~~La~~~~~~~~i~~-~g~i~~Lv~lL~----------------------------------------------  578 (643)
                      .++.+|.+++.+.+++..+.. .|+++.++.++.                                              
T Consensus       162 ~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T d1xm9a1         162 NATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhh
Confidence            888888888877666655433 344555544432                                              


Q ss_pred             ----------------------------------------------------c-CChHHHHHHHHHHHHHhcCCHH----
Q 040749          579 ----------------------------------------------------E-GTPKNKECATAVLLELGANNSS----  601 (643)
Q Consensus       579 ----------------------------------------------------~-~s~~~~e~A~~~L~~L~~~~~~----  601 (643)
                                                                          . .++..++.+..++..++.....    
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  321 (457)
T d1xm9a1         242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             hHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHH
Confidence                                                                1 2344556666777777654331    


Q ss_pred             -HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhhc
Q 040749          602 -FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKSE  641 (643)
Q Consensus       602 -~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~~  641 (643)
                       ....+.+.|+++.|+.++.++++.++..|..+|.+|....
T Consensus       322 ~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred             HHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh
Confidence             1223346899999999999999999999999999998653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=2.6e-14  Score=115.12  Aligned_cols=62  Identities=21%  Similarity=0.369  Sum_probs=53.1

Q ss_pred             CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCC-ccHHHHHHH
Q 040749          273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIA-PNYALKNLI  334 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~-pn~~l~~~i  334 (643)
                      +++.||||++.|.|||+++|||+||+.||++|++.++.+||.|+.++...++. |...+.+.+
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~l   84 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNIL   84 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHH
T ss_pred             cCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHHh
Confidence            44699999999999999999999999999999997777899999999877765 555555443

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.6e-14  Score=120.56  Aligned_cols=66  Identities=20%  Similarity=0.442  Sum_probs=57.8

Q ss_pred             CccccccCcccccCceecCCCCccchHHHHHHHhcC--CCCCCCcCcccccCCCCccHHHHHHHHHHH
Q 040749          273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSN--HRTCPKTRQTLAHLSIAPNYALKNLILQWC  338 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~--~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~  338 (643)
                      +.+.||||+++|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.+|..++++++.+.
T Consensus        20 ~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          20 KILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             cCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            357899999999999999999999999999999753  357999999999999999987777777663

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=3.3e-14  Score=105.39  Aligned_cols=52  Identities=25%  Similarity=0.428  Sum_probs=47.0

Q ss_pred             cccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCcc
Q 040749          275 FLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPN  327 (643)
Q Consensus       275 f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn  327 (643)
                      +.||||+++|+|||++ .|||+||+.||.+|+.+. .+||.|+++++..+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~-~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDT-GNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHH-SBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhhc-cCCCccCCcCCHHhceeC
Confidence            4699999999999988 599999999999999974 479999999999888764

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.1e-13  Score=115.39  Aligned_cols=66  Identities=18%  Similarity=0.312  Sum_probs=58.7

Q ss_pred             CCCccccccCcccccCceec-CCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCccHHHHHHHHHHHH
Q 040749          271 IPHEFLCPITLEIMRDPVII-ASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAPNYALKNLILQWCE  339 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dPv~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~pn~~l~~~i~~~~~  339 (643)
                      +++.+.||||+++|.+||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..++.+++.+..
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~   85 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHH
Confidence            45678999999999999976 8999999999999985   359999999999999999999999987643

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.9e-12  Score=101.09  Aligned_cols=50  Identities=24%  Similarity=0.368  Sum_probs=45.5

Q ss_pred             ccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCC
Q 040749          274 EFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLS  323 (643)
Q Consensus       274 ~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~  323 (643)
                      ...||||++.+.+|++++|||+||+.||.+|+..+..+||.|+..+....
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            35699999999999999999999999999999877778999999998754

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.1e-11  Score=89.47  Aligned_cols=50  Identities=12%  Similarity=0.157  Sum_probs=42.8

Q ss_pred             CccccccCcccccCceecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCCCc
Q 040749          273 HEFLCPITLEIMRDPVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSIAP  326 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l~p  326 (643)
                      +.+.||||++.+.||++++|||+||+.||++|    ..+||.|+++++...-.|
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~~   54 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADTP   54 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSCC
T ss_pred             CCCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCCC
Confidence            34799999999999999999999999999875    457999999988655443

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.5e-11  Score=90.16  Aligned_cols=52  Identities=19%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             CccccccCcccccC-c----eecCCCCccchHHHHHHHhcCCCCCCCcCcccccCCC
Q 040749          273 HEFLCPITLEIMRD-P----VIIASGQTFERESVQKWFDSNHRTCPKTRQTLAHLSI  324 (643)
Q Consensus       273 ~~f~CpIc~~~m~d-P----v~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~~~l  324 (643)
                      ++..||||++.+.. |    ++.+|||+||..||.+|+..+..+||.|++++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            56789999987642 2    5668999999999999998777789999999876554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=98.87  E-value=4.8e-10  Score=86.14  Aligned_cols=45  Identities=24%  Similarity=0.511  Sum_probs=39.5

Q ss_pred             ccccCcccccCcee-cCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          276 LCPITLEIMRDPVI-IASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       276 ~CpIc~~~m~dPv~-~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .||||++.+.+|++ ++|||+||..||++|++.+ .+||.|+.++..
T Consensus         7 ~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~-~~CP~CR~~i~~   52 (68)
T d1chca_           7 RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN-PTCPLCKVPVES   52 (68)
T ss_dssp             CCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS-CSTTTTCCCCCC
T ss_pred             CCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC-CcCCCCCcchHh
Confidence            49999999988865 6999999999999999974 589999998753

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.8e-09  Score=77.91  Aligned_cols=46  Identities=17%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             ccccCcccccC----ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          276 LCPITLEIMRD----PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       276 ~CpIc~~~m~d----Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .||||++.|.+    +++.+|||+||+.||.+|++.++.+||.||+++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            59999999853    34458999999999999999777789999998764

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.72  E-value=2.8e-09  Score=77.78  Aligned_cols=48  Identities=31%  Similarity=0.645  Sum_probs=39.8

Q ss_pred             CCCccccccCcccccCc---eec-CCCCccchHHHHHHHhcCCCCCCCcCccc
Q 040749          271 IPHEFLCPITLEIMRDP---VII-ASGQTFERESVQKWFDSNHRTCPKTRQTL  319 (643)
Q Consensus       271 ~~~~f~CpIc~~~m~dP---v~~-~cg~ty~r~~I~~~~~~~~~~cP~~~~~l  319 (643)
                      +.++..||||++.+.+.   +.+ +|||.|+..||.+|+.. +.+||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            35677899999999753   344 69999999999999987 56899999875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=7e-07  Score=86.66  Aligned_cols=231  Identities=10%  Similarity=-0.010  Sum_probs=149.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      .....|++.|.++++.++..|+..|..+..           ..++|.|+++++++++.++..|+.+|..+.........+
T Consensus        19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~~~   87 (276)
T d1oyza_          19 LNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNV   87 (276)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHH
T ss_pred             CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccccch
Confidence            456788999999999999999999987752           126899999999999999999999999987654443322


Q ss_pred             HhcCChHHHH-HHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          442 AQQGAIPAII-EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       442 ~~~g~i~~Lv-~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                           ++.+. .++++.++.++..|+.+|..+......    .....++.+...+.+.+..++..|+.++..+..     
T Consensus        88 -----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~-----  153 (276)
T d1oyza_          88 -----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----  153 (276)
T ss_dssp             -----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             -----HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch-----
Confidence                 22333 356678899999999999887643221    113356667777777777777777666654321     


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChh----------------hHH-------HhhcCCcHHHHHHHH
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPE----------------GRH-------KIGQLSFIETLVEYI  577 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~----------------~~~-------~i~~~g~i~~Lv~lL  577 (643)
                           ...++.+..++...+......+..++........                .+.       .+....+++.|+..+
T Consensus       154 -----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l  228 (276)
T d1oyza_         154 -----KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL  228 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             -----HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHh
Confidence                 2233444444444333333333333332221100                000       012245678888887


Q ss_pred             hcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhc-CCHHHHHHHHHHHH
Q 040749          578 REGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEG-GTSRAQRKANALLQ  635 (643)
Q Consensus       578 ~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~-g~~~~k~~A~~lL~  635 (643)
                      .+  +.++..|+.+|..+..           .++++.|..++.+ .+..++..|...|.
T Consensus       229 ~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         229 KK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             CC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            64  4577888888887742           3578999987866 47789988877663

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.2e-07  Score=99.82  Aligned_cols=264  Identities=14%  Similarity=0.124  Sum_probs=176.7

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ...+.+.+++.+.++.+|..|+..+..+++.-..   .......+|.+..+++.++..++..|+.++..++..-....  
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~--  238 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQED--  238 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHH--
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHH--
Confidence            4466777778889999999999999999864322   12234567888889999999999999999998875322111  


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccC--Ccc
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLN--QAN  519 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~--~~n  519 (643)
                      .....++.+..++.+.++.+|..++.+|..+...-.  ..+.....++.+..++.+.+..++..|+.++..++..  ...
T Consensus       239 ~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~  316 (588)
T d1b3ua_         239 LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG--PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC  316 (588)
T ss_dssp             HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC--HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTT
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh--hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhh
Confidence            123367888888988899999999999998864311  1123356789999999999999999999999988753  233


Q ss_pred             hHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 040749          520 KARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANN  599 (643)
Q Consensus       520 ~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~  599 (643)
                      .....-..+++.+...+.+.++.++..+..++..++..- +.... ....++.+..++.+.++.++..++..+..++..-
T Consensus       317 ~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~-~~~~~-~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~  394 (588)
T d1b3ua_         317 RENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL-GKDNT-IEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVI  394 (588)
T ss_dssp             HHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH-CHHHH-HHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHS
T ss_pred             hhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc-chhHH-HHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhc
Confidence            333334567788888888777777777766666554311 11111 1235667777777777777777766665554321


Q ss_pred             -HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          600 -SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       600 -~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                       ....    ....++.+..++.+.+.++|..+...+..+.
T Consensus       395 ~~~~~----~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~  430 (588)
T d1b3ua_         395 GIRQL----SQSLLPAIVELAEDAKWRVRLAIIEYMPLLA  430 (588)
T ss_dssp             CHHHH----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             chhhh----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence             1111    1234555666666666666666666555543

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=7.7e-07  Score=96.73  Aligned_cols=261  Identities=13%  Similarity=0.070  Sum_probs=185.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc--hHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES--NKRL  440 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~--~k~~  440 (643)
                      .++.+...+.+.+..+|..|+..+..++...+..   -.+.-.+|.+..+..++....+..|+..+..+...-.  .+..
T Consensus        88 ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~~---~~~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~~~~~~~~  164 (588)
T d1b3ua_          88 LLPPLESLATVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAE  164 (588)
T ss_dssp             GHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSCHHHHHH
T ss_pred             HHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            4566667777888999999999999988543322   1233356666677777667778888887777765322  2322


Q ss_pred             HHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcch
Q 040749          441 IAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQANK  520 (643)
Q Consensus       441 i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n~  520 (643)
                           .++.+..++.+.++.+|..|+.++..++..-...  ......++.+..++.+.++.++..|+.++..++..-+..
T Consensus       165 -----l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~  237 (588)
T d1b3ua_         165 -----LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             -----HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH
T ss_pred             -----HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH
Confidence                 4677888899999999999999999987542221  223456788888888899999999999999887532221


Q ss_pred             HHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 040749          521 ARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNS  600 (643)
Q Consensus       521 ~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~  600 (643)
                        .....+++.+..++.+.+..++..++.+|.+++..-..  .+.....++.+..++.+.++.+|..|+..|..++..-+
T Consensus       238 --~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~  313 (588)
T d1b3ua_         238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             --HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHh
Confidence              12234678888888888899999999999998753211  12234678999999999999999999999998886532


Q ss_pred             H-HHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHH
Q 040749          601 S-FILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLI  637 (643)
Q Consensus       601 ~-~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L  637 (643)
                      . ......-..+++.+...+.+.++.+|..+...+..+
T Consensus       314 ~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         314 ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL  351 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGG
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhh
Confidence            1 112222245677888888888888887776655543

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=6e-08  Score=82.37  Aligned_cols=50  Identities=14%  Similarity=0.249  Sum_probs=40.2

Q ss_pred             CCccccccCcccccCc------------------eecCCCCccchHHHHHHHhc----CCCCCCCcCccccc
Q 040749          272 PHEFLCPITLEIMRDP------------------VIIASGQTFERESVQKWFDS----NHRTCPKTRQTLAH  321 (643)
Q Consensus       272 ~~~f~CpIc~~~m~dP------------------v~~~cg~ty~r~~I~~~~~~----~~~~cP~~~~~l~~  321 (643)
                      +.+..|+||++.|.++                  .+++|||.|+..||.+|+..    ++.+||.||..+..
T Consensus        23 ~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            4456799999998653                  35689999999999999985    34589999987644

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.27  E-value=2.6e-07  Score=68.50  Aligned_cols=48  Identities=17%  Similarity=0.318  Sum_probs=41.1

Q ss_pred             CccccccCcccccCceecCCC-----CccchHHHHHHHhc-CCCCCCCcCcccc
Q 040749          273 HEFLCPITLEIMRDPVIIASG-----QTFERESVQKWFDS-NHRTCPKTRQTLA  320 (643)
Q Consensus       273 ~~f~CpIc~~~m~dPv~~~cg-----~ty~r~~I~~~~~~-~~~~cP~~~~~l~  320 (643)
                      +...|+||++.+.++.+.+|+     |.|++.||++|+.. ++.+||.|+.+..
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            457799999999999887764     99999999999974 6678999998765

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=2.6e-05  Score=80.55  Aligned_cols=273  Identities=12%  Similarity=0.074  Sum_probs=183.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhc-CCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH-
Q 040749          365 VSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADC-GAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA-  442 (643)
Q Consensus       365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~-g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~-  442 (643)
                      ..+...|.+.+.-....+...+..++.....+....-.. .....+-.+....+...+.-++..|..+...++.|..+. 
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~  204 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNGLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWL  204 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTTTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHT
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhccccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHH
Confidence            445556666666677778877887875544433221111 122233334466788888889999999999999998875 


Q ss_pred             -hcCChHHHHHHhcC-----------------CCHHHHHHHHHHHHhccccccchhhhhcc--CChHHHHHHhcc-CChh
Q 040749          443 -QQGAIPAIIEILQS-----------------GSTEARENSAAALFSLSMLDENKITIGLS--DGIPPLVDLLQN-GTIR  501 (643)
Q Consensus       443 -~~g~i~~Lv~lL~~-----------------~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~--g~i~~Lv~lL~~-~~~~  501 (643)
                       +...+++++++|+.                 .......+++-++|-||..++....+...  +.|+.|+.+++. ....
T Consensus       205 ~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEK  284 (477)
T d1ho8a_         205 HEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEK  284 (477)
T ss_dssp             THHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHH
T ss_pred             cccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence             34567777777742                 12467899999999999987777766654  459999999865 4678


Q ss_pred             hHHHHHHHHHHhccCCc--c----hHHHHHcCChHHHHHHhcc---CChhhHHHHHHHHHH-------HhC---------
Q 040749          502 GKKDAVTALFNLSLNQA--N----KARAIDAGIVLPLMNLLEE---RNLGMVDEALSILLL-------LAT---------  556 (643)
Q Consensus       502 ~~~~A~~aL~nLs~~~~--n----~~~lv~~G~v~~Lv~lL~~---~~~~~~~~Al~~L~~-------La~---------  556 (643)
                      +.+-++.+|.|+.....  +    ...|+..++++. +..|..   .|+++.+..-.+-..       +++         
T Consensus       285 vvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~  363 (477)
T d1ho8a_         285 VSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELD  363 (477)
T ss_dssp             HHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence            88899999999986533  2    233556666655 555544   677765543222111       221         


Q ss_pred             ------ChhhH-HHhh--------cC--CcHHHHHHHHhc----------CChHHHHHHHHHHHHHhcCCHHHHHHHHHC
Q 040749          557 ------HPEGR-HKIG--------QL--SFIETLVEYIRE----------GTPKNKECATAVLLELGANNSSFILAALQY  609 (643)
Q Consensus       557 ------~~~~~-~~i~--------~~--g~i~~Lv~lL~~----------~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~  609 (643)
                            +|..+ +.|.        +.  ..+..|+++|.+          .++.+..-|+.=+..+|.+-|..+..+.+.
T Consensus       364 Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~l  443 (477)
T d1ho8a_         364 SKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKT  443 (477)
T ss_dssp             HTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             cCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHc
Confidence                  12222 1222        22  347889999962          134445555555888999888888888888


Q ss_pred             CcHHHHHHHhhcCCHHHHHHHHHHHHHHH
Q 040749          610 GVYEHLIQLTEGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       610 g~i~~L~~ll~~g~~~~k~~A~~lL~~L~  638 (643)
                      |+=..+++++.+.++.+|..|..+++.+-
T Consensus       444 g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         444 GGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=3e-05  Score=74.58  Aligned_cols=205  Identities=11%  Similarity=-0.015  Sum_probs=138.6

Q ss_pred             cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhh
Q 040749          403 CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITI  482 (643)
Q Consensus       403 ~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i  482 (643)
                      ....+.|+++|.++++.++..|+.+|..+..          ..+++.++.++++.+++++..|+.+|..+........  
T Consensus        18 ~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~~--   85 (276)
T d1oyza_          18 KLNDDELFRLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED--   85 (276)
T ss_dssp             TSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH--
T ss_pred             cCCHHHHHHHhcCCCHHHHHHHHHHHHhhCC----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccc--
Confidence            3467789999999999999999999987642          3468999999999999999999999998864433221  


Q ss_pred             hccCChHHHHH-HhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH
Q 040749          483 GLSDGIPPLVD-LLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR  561 (643)
Q Consensus       483 ~~~g~i~~Lv~-lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~  561 (643)
                         ..++.+.. ++++.++.++..|+.+|.+++........    .+++.+...+.+.++.++..++.++....      
T Consensus        86 ---~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~----~~~~~l~~~~~d~~~~vr~~a~~~l~~~~------  152 (276)
T d1oyza_          86 ---NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP----KIVEQSQITAFDKSTNVRRATAFAISVIN------  152 (276)
T ss_dssp             ---HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTTCSCHHHHHHHHHHHHTC-------
T ss_pred             ---chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhH----HHHHHHHHHhcCcchHHHHHHHHHHhhcc------
Confidence               22344444 35677899999999999998764433221    24567777777788888777776665432      


Q ss_pred             HHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHH-------------------HH---HCCcHHHHHHHh
Q 040749          562 HKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILA-------------------AL---QYGVYEHLIQLT  619 (643)
Q Consensus       562 ~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~-------------------~~---~~g~i~~L~~ll  619 (643)
                          ....++.+..++...+...+..+..++..+....+.....                   ..   ...+++.|+..+
T Consensus       153 ----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~L~~~l  228 (276)
T d1oyza_         153 ----DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDEL  228 (276)
T ss_dssp             ------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             ----hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhhhhhHHHHHHHh
Confidence                2345666666776666666666666655554433321111                   00   134678888777


Q ss_pred             hcCCHHHHHHHHHHHHHHH
Q 040749          620 EGGTSRAQRKANALLQLIS  638 (643)
Q Consensus       620 ~~g~~~~k~~A~~lL~~L~  638 (643)
                      .+.  .++..|...|..+.
T Consensus       229 ~d~--~vr~~a~~aL~~ig  245 (276)
T d1oyza_         229 KKN--TVYDDIIEAAGELG  245 (276)
T ss_dssp             TSS--SCCHHHHHHHHHHC
T ss_pred             CCh--HHHHHHHHHHHHcC
Confidence            654  46677777777665

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=8.3e-07  Score=71.20  Aligned_cols=45  Identities=16%  Similarity=0.426  Sum_probs=36.1

Q ss_pred             ccccCcccccC------------------ceecCCCCccchHHHHHHHhcCCCCCCCcCccccc
Q 040749          276 LCPITLEIMRD------------------PVIIASGQTFERESVQKWFDSNHRTCPKTRQTLAH  321 (643)
Q Consensus       276 ~CpIc~~~m~d------------------Pv~~~cg~ty~r~~I~~~~~~~~~~cP~~~~~l~~  321 (643)
                      .|+||.+.|.+                  ++.++|||.|+..||.+|+..+ .+||.|+++...
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~-~~CP~CR~~~~~   85 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR-QVCPLDNREWEF   85 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC-SBCSSSCSBCCE
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHC-CcCCCCCCcccc
Confidence            38888777664                  2346899999999999999974 589999987653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=5.1e-05  Score=78.04  Aligned_cols=275  Identities=15%  Similarity=0.078  Sum_probs=168.5

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcch
Q 040749          362 EEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESN  437 (643)
Q Consensus       362 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~  437 (643)
                      +.++.+++.+.+  .++..+..++..+..+..........-.-...++.++..+.++  +..++..++.++.++......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            467788888875  3556666777777766643222211111123467778777654  567899999999988764322


Q ss_pred             H--HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccch-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhc
Q 040749          438 K--RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENK-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLS  514 (643)
Q Consensus       438 k--~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs  514 (643)
                      .  .........+.+...+.+++++++..++.+|..+....... .........+.+...+.+.+..++..|+..+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            1  11122335566777788889999999999999886432111 11112223344455566777888888888887775


Q ss_pred             cCCc---------------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHhhc
Q 040749          515 LNQA---------------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKIGQ  566 (643)
Q Consensus       515 ~~~~---------------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i~~  566 (643)
                      ....                     ......-...++.+.+.+..       .+..+...|..++..++.....  .+. 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~-  363 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-  363 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hhh-
Confidence            3211                     00111112234445555432       2234566777777777652211  111 


Q ss_pred             CCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          567 LSFIETLVEYIREGTPKNKECATAVLLELGANN-SSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       567 ~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~-~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      ...++.+...+.+.++..|+.|+.+|..++.+. +..... .-..+++.|+..+.+.++++|..|.++|..+.++
T Consensus       364 ~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~  437 (458)
T d1ibrb_         364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  437 (458)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            134566667777788999999999999988643 222111 1245789999999999999999999999887653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=5.3e-05  Score=86.25  Aligned_cols=270  Identities=13%  Similarity=0.077  Sum_probs=161.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCC--cchH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPYPDSKILEHAVTAVLNLSID--ESNK  438 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~--~~~k  438 (643)
                      .++.+.+.+.+.+|..|..|+.+++.++....+   .+..  ...+|.|+..|+++++.++..++++|..++..  +...
T Consensus       396 ~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~---~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~  472 (888)
T d1qbkb_         396 ILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPP  472 (888)
T ss_dssp             HHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHH---HHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCH
T ss_pred             HHHHHHHhhccchhHHHHHHHHHhhhhhhhHHH---HhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhh
Confidence            455666777889999999999999988843322   2211  23678899999999999999999999998752  2222


Q ss_pred             HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhccCChhhHHHHHHHHHHhcc-
Q 040749          439 RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQNGTIRGKKDAVTALFNLSL-  515 (643)
Q Consensus       439 ~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~-  515 (643)
                      ..+ -...++.++..+.+.++.++..|+++|.++......  .+..  ...++.|+..+.......+..+..++..++. 
T Consensus       473 ~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~--~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         473 DTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT--ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTT--SSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Confidence            222 245788888888888999999999999998643111  1111  2345555665555544444444444433321 


Q ss_pred             --CCcchHHHHH-----------------------------------cCChH-------HHHHHhc--------------
Q 040749          516 --NQANKARAID-----------------------------------AGIVL-------PLMNLLE--------------  537 (643)
Q Consensus       516 --~~~n~~~lv~-----------------------------------~G~v~-------~Lv~lL~--------------  537 (643)
                        ..-+....++                                   .+..+       .++.++.              
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence              0000000000                                   01111       0111110              


Q ss_pred             ---cCChhhHHHHHHHHHHHhC--ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749          538 ---ERNLGMVDEALSILLLLAT--HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVY  612 (643)
Q Consensus       538 ---~~~~~~~~~Al~~L~~La~--~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i  612 (643)
                         ..+.+....++.++..+..  .......+.....++.+...+.+.++.+++.|..++..++...+......++ ..+
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence               0123334444445554443  1111222333456777888888888999999999998888765544322222 256


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          613 EHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +.|..-+.+....++..|.+++..+..
T Consensus       709 ~~l~~~L~~~~~~v~~~a~~~ig~ia~  735 (888)
T d1qbkb_         709 PILGTNLNPEFISVCNNATWAIGEISI  735 (888)
T ss_dssp             HHHHHTCCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcCCHHHHHHHHHHHHHHHH
Confidence            777777777788899999888876653

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=8.3e-06  Score=95.96  Aligned_cols=271  Identities=10%  Similarity=0.078  Sum_probs=174.6

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHH
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLI  441 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i  441 (643)
                      ..+..|++.+.+.|++.|..|+..|....+.+......-.....++.|+++|...++++|..|+.+|..+...-.... +
T Consensus         3 ~~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~   81 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-V   81 (1207)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-H
T ss_pred             hhHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-H
Confidence            357789999999999999999998887653321110000112357899999999999999999999999876433221 1


Q ss_pred             HhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccc----ccchhhh--hccCChHHHHHHhcc-CChhhHHHHHHHHHHhc
Q 040749          442 AQQGAIPAIIEILQSGSTEARENSAAALFSLSML----DENKITI--GLSDGIPPLVDLLQN-GTIRGKKDAVTALFNLS  514 (643)
Q Consensus       442 ~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~----~~~k~~i--~~~g~i~~Lv~lL~~-~~~~~~~~A~~aL~nLs  514 (643)
                        ...++.|+..+.+++...+..++.+|..+...    .......  .....++.+...+.. .+..++..|+.+|..+.
T Consensus        82 --~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~  159 (1207)
T d1u6gc_          82 --ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADML  159 (1207)
T ss_dssp             --HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Confidence              23467777777777777788777777655321    1111100  112233444444433 35678888888888876


Q ss_pred             cCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHH
Q 040749          515 LNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLL  593 (643)
Q Consensus       515 ~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~  593 (643)
                      ...+.-..-....+++.|+..+.+++..++..|+.+|..++..-..  .. -...+..++..+.. .+...+..++.++.
T Consensus       160 ~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~l~  236 (1207)
T d1u6gc_         160 SRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIA  236 (1207)
T ss_dssp             HHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHH
T ss_pred             HHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence            4322210000123566777788888899999999999999774321  11 12467777776653 44556677788888


Q ss_pred             HHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          594 ELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       594 ~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .++...+...... -..+++.+...+.+.++.+++.|..++..+..
T Consensus       237 ~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         237 AISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            8876544321110 14678999999999999999999988887754

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=1.5e-06  Score=99.50  Aligned_cols=272  Identities=13%  Similarity=0.077  Sum_probs=170.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHH
Q 040749          363 EIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIA  442 (643)
Q Consensus       363 ~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~  442 (643)
                      .++.+++.+.+.++.++..|+..+..+....+..-.... ...++.++..+..++++++..++.+|..+......+-.-.
T Consensus       173 ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~l~~~  251 (888)
T d1qbkb_         173 MIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH  251 (888)
T ss_dssp             TTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCSTTCSHH-HHCSHHHHTTSSCCCSSSTTHHHHTTTTTSCSCTTTTTTT
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            467788888888888888888888877754432211111 2478889999888899999999999988875322211000


Q ss_pred             hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhc--cCChHHHHHHhcc-----------------------
Q 040749          443 QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGL--SDGIPPLVDLLQN-----------------------  497 (643)
Q Consensus       443 ~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~--~g~i~~Lv~lL~~-----------------------  497 (643)
                      -.+.++.++..+++.+.+++..|+..+..++.....+..+..  ...++.+...+..                       
T Consensus       252 l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (888)
T d1qbkb_         252 MHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQ  331 (888)
T ss_dssp             TTTTTTTTTTTTTSSCHHHHHHHHHHHCCCCSGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGG
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHH
Confidence            135666667777788899999998887777644332222211  1111111111000                       


Q ss_pred             -------------------------------------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCC
Q 040749          498 -------------------------------------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERN  540 (643)
Q Consensus       498 -------------------------------------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~  540 (643)
                                                           +....++.|..+|..++......  ++ .-+++.+.+.+.+++
T Consensus       332 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~~~--il-~~~l~~l~~~l~s~~  408 (888)
T d1qbkb_         332 DIRPRFHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYRDE--LL-PHILPLLKELLFHHE  408 (888)
T ss_dssp             GCCCCCCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCCSS--SH-HHHHHHHHHTTTSSS
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhHHH--HH-HHHHHHHHHhhccch
Confidence                                                 01224566666666665432221  00 012334445556677


Q ss_pred             hhhHHHHHHHHHHHhCCh-hhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHh
Q 040749          541 LGMVDEALSILLLLATHP-EGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLT  619 (643)
Q Consensus       541 ~~~~~~Al~~L~~La~~~-~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll  619 (643)
                      +..++.|+.+|..++... +...... ...++.++..+.+.++.+|..|+++|..++.........-.-..+++.|+..+
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l  487 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRI  487 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHh
Confidence            888999999999987632 2111111 24677788888888999999999999988753211111112256888999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHh
Q 040749          620 EGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       620 ~~g~~~~k~~A~~lL~~L~~  639 (643)
                      .+.+++++..|..+|..+.+
T Consensus       488 ~d~~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         488 LDSNKRVQEAACSAFATLEE  507 (888)
T ss_dssp             SSSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998865

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.83  E-value=7.9e-07  Score=74.58  Aligned_cols=108  Identities=22%  Similarity=0.238  Sum_probs=86.2

Q ss_pred             cCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHH
Q 040749          372 SSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAII  451 (643)
Q Consensus       372 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv  451 (643)
                      ++.++.+|..|++.|..+.            ..+++.|+..|.++++.++..|+.+|.++.          ..++++.|+
T Consensus         2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~   59 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLI   59 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHH
Confidence            4455566666666655442            136889999999999999999999998764          234678999


Q ss_pred             HHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          452 EILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALF  511 (643)
Q Consensus       452 ~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~  511 (643)
                      .+|++.++.+|..|+.+|..+          +..++++.|..++++.++.++..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i----------~~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQI----------GGERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHH----------CSHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHh----------CccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999876          33567899999999999999999988764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.83  E-value=2.5e-06  Score=71.44  Aligned_cols=109  Identities=16%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             CCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHH
Q 040749          413 LPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLV  492 (643)
Q Consensus       413 L~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv  492 (643)
                      |+.+|+.+|..|+.+|..+.           ..+++.|+..|.++++.+|..|+.+|.++.          ..++++.|+
T Consensus         1 L~D~~~~VR~~A~~aL~~~~-----------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~~~~~~~L~   59 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG-----------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------DERAVEPLI   59 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS-----------STTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------SHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------hhhhHHHHH
Confidence            45566677777777766543           246889999999999999999999997653          245789999


Q ss_pred             HHhccCChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHH
Q 040749          493 DLLQNGTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILL  552 (643)
Q Consensus       493 ~lL~~~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~  552 (643)
                      .+|.+.++.++..|+.+|..+..          .++++.|..++.++++.++..|+.+|.
T Consensus        60 ~~l~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          60 KLLEDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             hhhccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999987742          345788889999999999998887763

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.75  E-value=0.00025  Score=78.92  Aligned_cols=266  Identities=11%  Similarity=0.059  Sum_probs=166.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCcch--HH
Q 040749          364 IVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDESN--KR  439 (643)
Q Consensus       364 i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~~~--k~  439 (643)
                      .+.|...+.|+|+++|.+|-..|..+..+++        .++++.|...+.+.  +..+|..|+..|.|.......  ..
T Consensus         7 ~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~   78 (861)
T d2bpta1           7 AQLLENSILSPDQNIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQ   78 (861)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhh
Confidence            3344455778899999999999998875442        23567788877654  567888888888887543211  10


Q ss_pred             H----H---H----hcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCC-hhhHHHHH
Q 040749          440 L----I---A----QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGT-IRGKKDAV  507 (643)
Q Consensus       440 ~----i---~----~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~-~~~~~~A~  507 (643)
                      .    .   .    .......++..+.+++..++..++.++..++..+....  .-+..++.|+..+.+.+ ...+..|+
T Consensus        79 ~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~--~wpeli~~L~~~~~s~~~~~~~~~al  156 (861)
T d2bpta1          79 QFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG--AWPELMKIMVDNTGAEQPENVKRASL  156 (861)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT--CCHHHHHHHHHHTSTTSCHHHHHHHH
T ss_pred             hHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            0    0   0    11223556677778889999999999998864332110  01356777888776654 45677788


Q ss_pred             HHHHHhccCCcchHHHHHcC---ChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHH--HhhcCCcHHHHHHHHhcC
Q 040749          508 TALFNLSLNQANKARAIDAG---IVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRH--KIGQLSFIETLVEYIREG  580 (643)
Q Consensus       508 ~aL~nLs~~~~n~~~lv~~G---~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~--~i~~~g~i~~Lv~lL~~~  580 (643)
                      .+|..++..........-..   .+..++..+..  .+..++..|+.++.++...-....  .......++.+...+.+.
T Consensus       157 ~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (861)
T d2bpta1         157 LALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAE  236 (861)
T ss_dssp             HHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCC
Confidence            88988875433221111111   22333333332  456788889999988866322111  111123566777888888


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          581 TPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       581 s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      ++..+..+..+|..++...++.....+..-+...+.....+.++.++..|..++..+.+
T Consensus       237 ~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         237 DIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            99999999999999987655443332222233334455567788899888888876654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00058  Score=79.67  Aligned_cols=232  Identities=10%  Similarity=0.100  Sum_probs=150.5

Q ss_pred             hHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcC----Cc
Q 040749          360 QKEEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSI----DE  435 (643)
Q Consensus       360 ~~~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~----~~  435 (643)
                      ....++.+++.|.+.++++|..|+++|..++..-++...    ...++.|+..+.+++...+..+..+|..+..    ..
T Consensus        43 ~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~----~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~  118 (1207)
T d1u6gc_          43 ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQV----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS  118 (1207)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHH----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence            346789999999999999999999999999865543321    2357788888888888888877777765532    11


Q ss_pred             ch--HHHHHhcCChHHHHHHhcC-CCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          436 SN--KRLIAQQGAIPAIIEILQS-GSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       436 ~~--k~~i~~~g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      .+  -........++.+...+.. .+..++..|..+|..+......-..-.....++.|+..+.+.+..+++.|+.+|..
T Consensus       119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            11  1111122234444554443 45788888888888775432211000113456777778888889999999999999


Q ss_pred             hccCCcchHHHHHcCChHHHHHHhcc-CChhhHHHHHHHHHHHhCChhhHHHhhc--CCcHHHHHHHHhcCChHHHHHHH
Q 040749          513 LSLNQANKARAIDAGIVLPLMNLLEE-RNLGMVDEALSILLLLATHPEGRHKIGQ--LSFIETLVEYIREGTPKNKECAT  589 (643)
Q Consensus       513 Ls~~~~n~~~lv~~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~~~~~~~i~~--~g~i~~Lv~lL~~~s~~~~e~A~  589 (643)
                      |+.+-...   .-...++.++..+.. .+...+..++.++..++.....  .+..  ..+++.+++.+...++..++.++
T Consensus       199 l~~~~~~~---~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~~l~~i~~~l~~~l~~~~~~~r~~al  273 (1207)
T d1u6gc_         199 LVMSCGNI---VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH--RIGEYLEKIIPLVVKFCNVDDDELREYCI  273 (1207)
T ss_dssp             HTTTC-------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG--GGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch--hhHHHHHHHHHHHHHHhcCccHHHHHHHH
Confidence            97643321   112346667766644 4444555667777777652211  1222  46789999999988999999999


Q ss_pred             HHHHHHhcCCH
Q 040749          590 AVLLELGANNS  600 (643)
Q Consensus       590 ~~L~~L~~~~~  600 (643)
                      .++..++...+
T Consensus       274 ~~l~~l~~~~~  284 (1207)
T d1u6gc_         274 QAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHHHhCh
Confidence            99988876543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00068  Score=69.20  Aligned_cols=254  Identities=12%  Similarity=0.069  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhcC--CCHHHHHHHHHHHHHhhccCchhHH-HHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCc-ch
Q 040749          362 EEIVSLVEQLSS--SKLEVQKEAVRKIRLLSKENPENRI-LIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDE-SN  437 (643)
Q Consensus       362 ~~i~~Lv~~L~s--~~~~~~~~A~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~-~~  437 (643)
                      ..++.+++.+.+  .+.+++..|+..+..+......... ........+.+..++.+++++++..++.+|..+.... ..
T Consensus       171 ~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~  250 (458)
T d1ibrb_         171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY  250 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHH
Confidence            457777788875  3578899999999988754332211 1112235667788888999999999999999886422 11


Q ss_pred             HHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccc-----------------hhhhhc----cCChHHHHHHhc
Q 040749          438 KRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDEN-----------------KITIGL----SDGIPPLVDLLQ  496 (643)
Q Consensus       438 k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~-----------------k~~i~~----~g~i~~Lv~lL~  496 (643)
                      -...+.....+.+...+.+.+.+++..|...+..++.....                 ......    ...++.+...+.
T Consensus       251 ~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~  330 (458)
T d1ibrb_         251 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLT  330 (458)
T ss_dssp             CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhh
Confidence            11111222233344556677788888888888777532110                 000000    122344444433


Q ss_pred             c-------CChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhH--HHhhcC
Q 040749          497 N-------GTIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGR--HKIGQL  567 (643)
Q Consensus       497 ~-------~~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~--~~i~~~  567 (643)
                      +       ++...+..|..++..++...+..  +. ..+++.+.+.+.++++..+..|+.+|..++......  ... -.
T Consensus       331 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~--~~-~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~-l~  406 (458)
T d1ibrb_         331 KQDENDDDDDWNPCKAAGVCLMLLATCCEDD--IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VI  406 (458)
T ss_dssp             CCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT--HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TT
T ss_pred             cchhhhccccccHHHHHHHHHHHHHHhccHh--hh-hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHH-HH
Confidence            2       12356777888888777533322  11 124566677777788899999999999998643211  111 13


Q ss_pred             CcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcC
Q 040749          568 SFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGG  622 (643)
Q Consensus       568 g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g  622 (643)
                      ..++.++..+.+.++.+|..|+++|..++..-++.   ....-.+++++..+.+|
T Consensus       407 ~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~---~~~~~~l~~ll~~ll~g  458 (458)
T d1ibrb_         407 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEG  458 (458)
T ss_dssp             THHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG---CCSTTTHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc---cchhhHHHHHHHHHhCc
Confidence            67899999999999999999999999987543211   11123466666655544

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=3.6e-05  Score=62.14  Aligned_cols=43  Identities=14%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             cccccCccccc--C-ceecCCCCccchHHHHHHHhc----CC---CCCCCcCc
Q 040749          275 FLCPITLEIMR--D-PVIIASGQTFERESVQKWFDS----NH---RTCPKTRQ  317 (643)
Q Consensus       275 f~CpIc~~~m~--d-Pv~~~cg~ty~r~~I~~~~~~----~~---~~cP~~~~  317 (643)
                      -.||||++.+.  + |+..+|||.||+.||..|+..    +.   .+||.|+-
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            46999999885  3 445689999999999999973    22   25998643

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.0064  Score=67.28  Aligned_cols=274  Identities=15%  Similarity=0.076  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhcCC--CHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCCc
Q 040749          362 EEIVSLVEQLSSS--KLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPYP--DSKILEHAVTAVLNLSIDE  435 (643)
Q Consensus       362 ~~i~~Lv~~L~s~--~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~~  435 (643)
                      +.++.+++.+.++  +...+..++..+..+++.-..  ..+..  ...++.++..+.++  +..++..++.++.+....-
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~--~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh
Confidence            4688888888754  356677788888888743221  11111  23577888877654  4678888988888775422


Q ss_pred             chH--HHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhccCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          436 SNK--RLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       436 ~~k--~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      ...  ......-.++.+...+.+++++++..+..+|..+..... .-.........+.+...+.+....+...+...+..
T Consensus       206 ~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            111  011112235666777788889999999999988864321 11111223344455556667777777777766665


Q ss_pred             hccCCc---------------------chHHHHHcCChHHHHHHhcc-------CChhhHHHHHHHHHHHhCChhhHHHh
Q 040749          513 LSLNQA---------------------NKARAIDAGIVLPLMNLLEE-------RNLGMVDEALSILLLLATHPEGRHKI  564 (643)
Q Consensus       513 Ls~~~~---------------------n~~~lv~~G~v~~Lv~lL~~-------~~~~~~~~Al~~L~~La~~~~~~~~i  564 (643)
                      ++....                     ..........++.+...+..       .+..+...|..++..++.....  .+
T Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  363 (876)
T d1qgra_         286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  363 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GG
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--hh
Confidence            553111                     01111112233444444432       1223566666777666543211  11


Q ss_pred             hcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Q 040749          565 GQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISKS  640 (643)
Q Consensus       565 ~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~~  640 (643)
                      . ...++.+...+.+.+...++.++..+..+..........-.-..+++.+...+.+.+++++..|..++..+.+.
T Consensus       364 ~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T d1qgra_         364 V-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             h-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHH
Confidence            1 12334444555567788888888888887765332222222234788899999999999999999999887653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.0019  Score=66.30  Aligned_cols=224  Identities=14%  Similarity=0.153  Sum_probs=149.9

Q ss_pred             cCCCHHHHHHHHHHHHHhhccCchhHHHHHh--cCCcHHHHHhCCC-----------------CChHHHHHHHHHHHHhc
Q 040749          372 SSSKLEVQKEAVRKIRLLSKENPENRILIAD--CGAIPPLVQLLPY-----------------PDSKILEHAVTAVLNLS  432 (643)
Q Consensus       372 ~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~-----------------~d~~~~~~a~~~L~nLs  432 (643)
                      .+.+.+.+.-|+..+..+. ..+..|..+..  ...++.|+..|..                 .+..++.+++-+++-||
T Consensus       175 ~~~~~~~~~i~v~~lq~ll-r~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS  253 (477)
T d1ho8a_         175 NIEQMDTCYVCIRLLQELA-VIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT  253 (477)
T ss_dssp             CTTCHHHHHHHHHHHHHHH-TSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred             cccccchHHHHHHHHHHHh-cCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence            4567777777888888777 45778877743  3456666665532                 13467889999999999


Q ss_pred             CCcchHHHHHhc--CChHHHHHHhcC-CCHHHHHHHHHHHHhcccccc--chh----hhhccCChHHHHHHhccC---Ch
Q 040749          433 IDESNKRLIAQQ--GAIPAIIEILQS-GSTEARENSAAALFSLSMLDE--NKI----TIGLSDGIPPLVDLLQNG---TI  500 (643)
Q Consensus       433 ~~~~~k~~i~~~--g~i~~Lv~lL~~-~~~e~~~~Aa~~L~~Ls~~~~--~k~----~i~~~g~i~~Lv~lL~~~---~~  500 (643)
                      .+++....+...  +.|+.++++++. ....+...+.++|.|+.....  +..    .+...+++ +++..|...   ++
T Consensus       254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l-~~l~~L~~r~~~De  332 (477)
T d1ho8a_         254 FNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDE  332 (477)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSH
T ss_pred             cCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchh-HHHHHHhcCCCCCH
Confidence            988877777654  458889998864 457788889999999975432  222    22234444 555656543   33


Q ss_pred             hhHHHHHHHH--------HHhcc---------------CCcch-HHHHH----------cCChHHHHHHhcc--------
Q 040749          501 RGKKDAVTAL--------FNLSL---------------NQANK-ARAID----------AGIVLPLMNLLEE--------  538 (643)
Q Consensus       501 ~~~~~A~~aL--------~nLs~---------------~~~n~-~~lv~----------~G~v~~Lv~lL~~--------  538 (643)
                      +...+ +..|        ..+++               .+..+ ..+..          -.++..|+++|..        
T Consensus       333 dl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         333 ELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            33321 1111        11221               12222 12222          2357788999862        


Q ss_pred             --CChhhHHHHHHHHHHHhC-ChhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 040749          539 --RNLGMVDEALSILLLLAT-HPEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGAN  598 (643)
Q Consensus       539 --~~~~~~~~Al~~L~~La~-~~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~  598 (643)
                        .++.+..-||.=+..++. +|.||..+.+.|+=..++++|.+.++.+|.+|+.++..+..+
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence              345556667777888887 799999998889988999999999999999999998877654

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.0081  Score=66.11  Aligned_cols=271  Identities=10%  Similarity=0.054  Sum_probs=152.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHhhccC-chhHHHHHhcCCcHHHHHhCCCC-ChHHHHHHHHHHHHhcCCcchH-HHH
Q 040749          365 VSLVEQLSSSKLEVQKEAVRKIRLLSKEN-PENRILIADCGAIPPLVQLLPYP-DSKILEHAVTAVLNLSIDESNK-RLI  441 (643)
Q Consensus       365 ~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~-~~~r~~i~~~g~i~~Lv~lL~~~-d~~~~~~a~~~L~nLs~~~~~k-~~i  441 (643)
                      ..+++.|.+.++.++..++..+..++... +.++.    ...++.|+..+.++ +...+..|+.+|..++..-... ..+
T Consensus        98 ~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~  173 (861)
T d2bpta1          98 TNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQAL  173 (861)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            45667788888999999999998887432 11100    12467777877765 4567788888988886432211 111


Q ss_pred             Hh--cCChHHHHHHhc--CCCHHHHHHHHHHHHhccccccc-h-hhhhccCChHHHHHHhccCChhhHHHHHHHHHHhcc
Q 040749          442 AQ--QGAIPAIIEILQ--SGSTEARENSAAALFSLSMLDEN-K-ITIGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSL  515 (643)
Q Consensus       442 ~~--~g~i~~Lv~lL~--~~~~e~~~~Aa~~L~~Ls~~~~~-k-~~i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~  515 (643)
                      ..  ...+..++..+.  ..+..++..|..++.++...-.. - ........++.+...+.++++..+..+..++..+..
T Consensus       174 ~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~  253 (861)
T d2bpta1         174 VSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMS  253 (861)
T ss_dssp             GGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            10  122334444443  34588999999999887543211 1 111123456777788888899999999999988864


Q ss_pred             C-CcchHHHHHcCChHHHHHHhccCChhhHHHHHHHHHHHhCChhhHH--------------------------------
Q 040749          516 N-QANKARAIDAGIVLPLMNLLEERNLGMVDEALSILLLLATHPEGRH--------------------------------  562 (643)
Q Consensus       516 ~-~~n~~~lv~~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~~~~~--------------------------------  562 (643)
                      . ++.....+..-+...+.....+.++.++..++..+..++.......                                
T Consensus       254 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l  333 (861)
T d2bpta1         254 KYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL  333 (861)
T ss_dssp             HHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2221111111111222233334555666666555554432110000                                


Q ss_pred             ----------------H----------hhcCCcHHHHHH----HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Q 040749          563 ----------------K----------IGQLSFIETLVE----YIREGTPKNKECATAVLLELGANNSSFILAALQYGVY  612 (643)
Q Consensus       563 ----------------~----------i~~~g~i~~Lv~----lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g~i  612 (643)
                                      .          ......++.+..    .+.+.+...++.|..++..+..........-.-..++
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l  413 (861)
T d2bpta1         334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL  413 (861)
T ss_dssp             TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred             HHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Confidence                            0          000112222222    2223455667777777777765433222111123467


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          613 EHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       613 ~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +.+...+.+.++.++..|.+++..+..
T Consensus       414 ~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         414 PSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            888889999999999999999887764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0026  Score=70.55  Aligned_cols=263  Identities=11%  Similarity=0.082  Sum_probs=165.8

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCC--ChHHHHHHHHHHHHhcCC-cch-HHHH
Q 040749          366 SLVEQLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYP--DSKILEHAVTAVLNLSID-ESN-KRLI  441 (643)
Q Consensus       366 ~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--d~~~~~~a~~~L~nLs~~-~~~-k~~i  441 (643)
                      .+++..-|+|.+.+..|-..|..+.+.++        .|++..|+..+.+.  +..+|..|+..|.|.... ... +...
T Consensus         5 ~~L~~~~s~d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~   76 (876)
T d1qgra_           5 TILEKTVSPDRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQY   76 (876)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhh
Confidence            34555557899999999999998875432        24677777877554  567899999889886532 111 1110


Q ss_pred             ----------HhcCChHHHHHHhcCCCHHHHHHHHHHHHhccccccchhhhhccCChHHHHHHhccCC--hhhHHHHHHH
Q 040749          442 ----------AQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDENKITIGLSDGIPPLVDLLQNGT--IRGKKDAVTA  509 (643)
Q Consensus       442 ----------~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i~~Lv~lL~~~~--~~~~~~A~~a  509 (643)
                                ........++..+.+.+. .+..++.++..++..+....  .-++.++.|+..+.+++  ...+..++.+
T Consensus        77 ~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~--~Wpeli~~L~~~l~~~~~~~~~~~~~l~~  153 (876)
T d1qgra_          77 QQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVN--QWPELIPQLVANVTNPNSTEHMKESTLEA  153 (876)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGT--CCTTHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             hcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCcc--ccHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence                      012233456677766543 34456777777764321100  02578899999886543  5667788888


Q ss_pred             HHHhccCCc-chHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChhhHHH--hhcCCcHHHHHHHHhcCChHH
Q 040749          510 LFNLSLNQA-NKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPEGRHK--IGQLSFIETLVEYIREGTPKN  584 (643)
Q Consensus       510 L~nLs~~~~-n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~~~~~--i~~~g~i~~Lv~lL~~~s~~~  584 (643)
                      |..++..-. ....-.-..+++.++..+.+  .+..++..|+.++.+..........  ....-.++.+...+.+.++..
T Consensus       154 l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v  233 (876)
T d1qgra_         154 IGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRV  233 (876)
T ss_dssp             HHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            888864221 11111113456777777765  3456788888888777553221111  111124555666667788899


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Q 040749          585 KECATAVLLELGANNSSFILAALQYGVYEHLIQLTEGGTSRAQRKANALLQLISK  639 (643)
Q Consensus       585 ~e~A~~~L~~L~~~~~~~~~~~~~~g~i~~L~~ll~~g~~~~k~~A~~lL~~L~~  639 (643)
                      +..+..+|..++...++.....+...+.+.+.....+..+.++..|...+..+++
T Consensus       234 ~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         234 RVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            9999999999988776665555555666777777778888888888877766654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.65  E-value=0.0041  Score=58.35  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=38.8

Q ss_pred             HhcCCCHHHHHHHHHHHHHhhccCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcchHHHHHhcCChHH
Q 040749          370 QLSSSKLEVQKEAVRKIRLLSKENPENRILIADCGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDESNKRLIAQQGAIPA  449 (643)
Q Consensus       370 ~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~~k~~i~~~g~i~~  449 (643)
                      .|.++.++++..|++                  +-.++.|..+++.+|+.++..|+..|.                 .+.
T Consensus        50 ~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~Lp-----------------~~~   94 (233)
T d1lrva_          50 YLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRLP-----------------REQ   94 (233)
T ss_dssp             GTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTSC-----------------SGG
T ss_pred             HhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHcC-----------------HHH
Confidence            455666776655442                  234677888888889999888875431                 233


Q ss_pred             HHHHhcCCCHHHHHHHHH
Q 040749          450 IIEILQSGSTEARENSAA  467 (643)
Q Consensus       450 Lv~lL~~~~~e~~~~Aa~  467 (643)
                      +..++..++.+++..++.
T Consensus        95 L~~L~~D~d~~VR~~aa~  112 (233)
T d1lrva_          95 LSALMFDEDREVRITVAD  112 (233)
T ss_dssp             GGGTTTCSCHHHHHHHHH
T ss_pred             HHHHhcCCChhHHHHHHh
Confidence            445555556666655543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.13  E-value=0.014  Score=54.60  Aligned_cols=62  Identities=23%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHH-----Hhhc-cCchhHHHHHhcCCcHHHHHhCCCCChHHHHHHHH
Q 040749          365 VSLVEQLSSSKLEVQKEAVRKIR-----LLSK-ENPENRILIADCGAIPPLVQLLPYPDSKILEHAVT  426 (643)
Q Consensus       365 ~~Lv~~L~s~~~~~~~~A~~~L~-----~L~~-~~~~~r~~i~~~g~i~~Lv~lL~~~d~~~~~~a~~  426 (643)
                      ..|+.+++.+++.++..|++.|.     .+.. .+...|...+..-..+.|..++..++..++..++.
T Consensus        69 ~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~  136 (233)
T d1lrva_          69 EALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQ  136 (233)
T ss_dssp             GGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHh
Confidence            44566777788888888775431     1111 12223333333333455555565556665555543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.50  E-value=0.22  Score=47.68  Aligned_cols=195  Identities=14%  Similarity=0.123  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCchhHHH----HHh-cCCcHHHHHhCCCCChHHHHHHHHHHHHhcCCcc
Q 040749          362 EEIVSLVEQLSSSKLEVQKEAVRKIRLLSKENPENRIL----IAD-CGAIPPLVQLLPYPDSKILEHAVTAVLNLSIDES  436 (643)
Q Consensus       362 ~~i~~Lv~~L~s~~~~~~~~A~~~L~~L~~~~~~~r~~----i~~-~g~i~~Lv~lL~~~d~~~~~~a~~~L~nLs~~~~  436 (643)
                      +.+..|+..|..-+.+.+..++.....+.+.....|..    +.. ...+..|+.-.  +++++--++-..|.....++.
T Consensus        69 d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~e~  146 (330)
T d1upka_          69 GLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRHEP  146 (330)
T ss_dssp             SHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTSHH
T ss_pred             ChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhhHH
Confidence            46888999999999999999999999988776666533    332 22334444433  356677778888888888888


Q ss_pred             hHHHHHhcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc-chhhhhc---cCChHHHHHHhccCChhhHHHHHHHHHH
Q 040749          437 NKRLIAQQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE-NKITIGL---SDGIPPLVDLLQNGTIRGKKDAVTALFN  512 (643)
Q Consensus       437 ~k~~i~~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~-~k~~i~~---~g~i~~Lv~lL~~~~~~~~~~A~~aL~n  512 (643)
                      -...|.....+..+.+.+..++-++...|..++..|-..+. .......   ...+...-.+|.+++--.+..++..|..
T Consensus       147 lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLge  226 (330)
T d1upka_         147 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGE  226 (330)
T ss_dssp             HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            88888888889999999999999999999999988764432 1122222   3567777889999999999999999999


Q ss_pred             hccCCcchHHHHH----cCChHHHHHHhccCChhhHHHHHHHHHHHhCCh
Q 040749          513 LSLNQANKARAID----AGIVLPLMNLLEERNLGMVDEALSILLLLATHP  558 (643)
Q Consensus       513 Ls~~~~n~~~lv~----~G~v~~Lv~lL~~~~~~~~~~Al~~L~~La~~~  558 (643)
                      |.....|...|..    ..-+..++.+|++.+..++-+|..++.-...+|
T Consensus       227 lLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         227 LLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            9999998877654    446778899999999999999999998887765

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.75  E-value=2.1  Score=41.42  Aligned_cols=176  Identities=16%  Similarity=0.211  Sum_probs=108.5

Q ss_pred             HHHHHhcCCCH-HHHHHHHHHHHHhhccCchh-HHHHHhcCCcHHHHHhCCC-----------CChHHHHHHHHHHHHhc
Q 040749          366 SLVEQLSSSKL-EVQKEAVRKIRLLSKENPEN-RILIADCGAIPPLVQLLPY-----------PDSKILEHAVTAVLNLS  432 (643)
Q Consensus       366 ~Lv~~L~s~~~-~~~~~A~~~L~~L~~~~~~~-r~~i~~~g~i~~Lv~lL~~-----------~d~~~~~~a~~~L~nLs  432 (643)
                      ..|..|.+... +.....+..|+.--+.++-. -..+ .++|+..|+.+|..           .+...+..++.+|..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            34555655422 32334444544333344432 3333 45677777776631           13557788999999999


Q ss_pred             CCcchHHHHH-hcCChHHHHHHhcCCCHHHHHHHHHHHHhcccccc---chh----------hhhccCChHHHHHHhccC
Q 040749          433 IDESNKRLIA-QQGAIPAIIEILQSGSTEARENSAAALFSLSMLDE---NKI----------TIGLSDGIPPLVDLLQNG  498 (643)
Q Consensus       433 ~~~~~k~~i~-~~g~i~~Lv~lL~~~~~e~~~~Aa~~L~~Ls~~~~---~k~----------~i~~~g~i~~Lv~lL~~~  498 (643)
                      .+..+...+. ..+++..|+..|.++.+.++..|..+|..++...+   ...          ...+.+-+.+++..++++
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            8888766665 67899999999999999999999999988875422   111          223456788999888766


Q ss_pred             C-hhhHHHHHHHHHHhccCCcc-------hHHHHHcCChHHHHHHhcc-CChhh
Q 040749          499 T-IRGKKDAVTALFNLSLNQAN-------KARAIDAGIVLPLMNLLEE-RNLGM  543 (643)
Q Consensus       499 ~-~~~~~~A~~aL~nLs~~~~n-------~~~lv~~G~v~~Lv~lL~~-~~~~~  543 (643)
                      . .+.+..++..+-.|....++       |..+..+|..+. +..|.. .++.+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~~i-l~~l~~~~~~~L  217 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELREIENEDM  217 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTTCCCHHH
T ss_pred             ccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChHHH-HHHHHccCChHH
Confidence            4 45554444444445555444       334566776554 444544 44443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.27  E-value=4.1  Score=38.54  Aligned_cols=156  Identities=17%  Similarity=0.086  Sum_probs=119.7

Q ss_pred             hhccCChHHHHHHhccCChhhHHHHHHHHHHhccCCcc-hHHHHH--cCChHHHHHHhcc-CChhhHHHHHHHHHHHhCC
Q 040749          482 IGLSDGIPPLVDLLQNGTIRGKKDAVTALFNLSLNQAN-KARAID--AGIVLPLMNLLEE-RNLGMVDEALSILLLLATH  557 (643)
Q Consensus       482 i~~~g~i~~Lv~lL~~~~~~~~~~A~~aL~nLs~~~~n-~~~lv~--~G~v~~Lv~lL~~-~~~~~~~~Al~~L~~La~~  557 (643)
                      +...+.+..|+..|..-+.+.+++++....++.....+ +...++  ..-...|..++.. .++++.-.+=.+|.....+
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~  144 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRH  144 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTS
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhh
Confidence            34467888899989888999999999999998764332 322222  1112334444433 5678888888899999999


Q ss_pred             hhhHHHhhcCCcHHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHHCC---cHHHHHHHhhcCCHHHHHHHHHHH
Q 040749          558 PEGRHKIGQLSFIETLVEYIREGTPKNKECATAVLLELGANNSSFILAALQYG---VYEHLIQLTEGGTSRAQRKANALL  634 (643)
Q Consensus       558 ~~~~~~i~~~g~i~~Lv~lL~~~s~~~~e~A~~~L~~L~~~~~~~~~~~~~~g---~i~~L~~ll~~g~~~~k~~A~~lL  634 (643)
                      +.....+.....+..+.+.+..++=++-.-|...+..+-...+..+...+..+   .+...-.++.+++--+|+.+..+|
T Consensus       145 e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLL  224 (330)
T d1upka_         145 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLL  224 (330)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            98888888888899999999988888888899999888777777777766544   466777899999999999999999


Q ss_pred             HHH
Q 040749          635 QLI  637 (643)
Q Consensus       635 ~~L  637 (643)
                      ..+
T Consensus       225 gel  227 (330)
T d1upka_         225 GEL  227 (330)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=80.71  E-value=15  Score=34.87  Aligned_cols=152  Identities=11%  Similarity=0.129  Sum_probs=90.6

Q ss_pred             ChHHHHHHHHHHHHhcC----CcchHHHHHhcCChHHHHH----HhcCCCHHHHHHHHHHHHhccccccchhhhhccCCh
Q 040749          417 DSKILEHAVTAVLNLSI----DESNKRLIAQQGAIPAIIE----ILQSGSTEARENSAAALFSLSMLDENKITIGLSDGI  488 (643)
Q Consensus       417 d~~~~~~a~~~L~nLs~----~~~~k~~i~~~g~i~~Lv~----lL~~~~~e~~~~Aa~~L~~Ls~~~~~k~~i~~~g~i  488 (643)
                      ++.++..++-++++|..    +....    ....++.+..    .+..++.+-+..+..+|.|+..          .+.+
T Consensus       140 ~~~l~~~a~La~gslv~~~c~~~~~~----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----------p~~i  205 (336)
T d1lsha1         140 RPILRKTAVLGYGSLVFRYCANTVSC----PDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ----------PNSI  205 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSC----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC----------GGGH
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCC----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC----------HhHH
Confidence            55666666666666542    11110    0112333343    3445666666777888887742          4567


Q ss_pred             HHHHHHhccC-------ChhhHHHHHHHHHHhccCCcchHHHHHcCChHHHHHHhcc--CChhhHHHHHHHHHHHhCChh
Q 040749          489 PPLVDLLQNG-------TIRGKKDAVTALFNLSLNQANKARAIDAGIVLPLMNLLEE--RNLGMVDEALSILLLLATHPE  559 (643)
Q Consensus       489 ~~Lv~lL~~~-------~~~~~~~A~~aL~nLs~~~~n~~~lv~~G~v~~Lv~lL~~--~~~~~~~~Al~~L~~La~~~~  559 (643)
                      +.|..++...       +..++..|+.||.++....+..       +.+.+..++.+  .+.+++..|+.+|..  .+| 
T Consensus       206 ~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P-  275 (336)
T d1lsha1         206 KKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFE--SKP-  275 (336)
T ss_dssp             HHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCC-
T ss_pred             HHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHh--cCC-
Confidence            7787777532       4578899999999887654332       22456666655  456777777766654  223 


Q ss_pred             hHHHhhcCCcHHHHHHHHhc-CChHHHHHHHHHHHHHhcC
Q 040749          560 GRHKIGQLSFIETLVEYIRE-GTPKNKECATAVLLELGAN  598 (643)
Q Consensus       560 ~~~~i~~~g~i~~Lv~lL~~-~s~~~~e~A~~~L~~L~~~  598 (643)
                            ....+..+...+.. .+..+.....+.|.++...
T Consensus       276 ------~~~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s  309 (336)
T d1lsha1         276 ------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRS  309 (336)
T ss_dssp             ------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             ------CHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhC
Confidence                  11345666676654 4567777777778887753