Citrus Sinensis ID: 040750

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
MHFAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK
ccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
cccEEEEEcccccccccccccccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcHcHHHHHHHHHHHHHHHcc
MHFAVKFFIWgnetdanvsccsrgavtvglppawvdVSEEIATNVQRARTKMAELARAHAKAlmpsfgdgkedQHAIESLTQEITNILKRSEKRLQQLsaagpsedsnVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQqkegqdgvdlemnlnggrsrmedddlddmVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLvidqgtivdridyniqNVATTVDEGLKQLQK
MHFAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLsaagpsedsnvrkNVQRSLATDLQNLSMELRKKQSTYLKRlrqqkegqdgvdlemnlnggrsrmeDDDLDDMVFNEHQMAklkkseaftveREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDeglkqlqk
MHFAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTverereiqqvvesvNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK
**FAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQ***************************************************************************************************************************************************IQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTV*********
********************************AWVDVSEEIATNVQRARTKMAELAR***********************TQEITNILKR*************************SLATDLQNLSMELR**********************************************************VEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEG******
MHFAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQ***************NVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK
MHFAVKFFIWGNE*********RGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK**************************MVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHFAVKFFIWGNETDANVSCCSRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLxxxxxxxxxxxxxxxxxxxxxGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query245 2.2.26 [Sep-21-2011]
Q9SUJ1331 Syntaxin-43 OS=Arabidopsi yes no 0.906 0.670 0.830 1e-106
O65359322 Syntaxin-41 OS=Arabidopsi no no 0.902 0.686 0.825 1e-102
Q9SWH4323 Syntaxin-42 OS=Arabidopsi no no 0.914 0.693 0.702 1e-86
O14662325 Syntaxin-16 OS=Homo sapie yes no 0.877 0.661 0.388 3e-35
Q8BVI5326 Syntaxin-16 OS=Mus muscul yes no 0.877 0.659 0.382 1e-34
Q9P6P1301 t-SNARE affecting a late yes no 0.836 0.681 0.346 2e-23
Q08144397 T-SNARE affecting a late yes no 0.885 0.546 0.263 4e-16
P93654268 Syntaxin-22 OS=Arabidopsi no no 0.877 0.802 0.242 3e-06
O94651263 Syntaxin pep12 OS=Schizos no no 0.383 0.357 0.284 4e-06
P61268288 Syntaxin-1B OS=Ovis aries N/A no 0.816 0.694 0.237 0.0003
>sp|Q9SUJ1|SYP43_ARATH Syntaxin-43 OS=Arabidopsis thaliana GN=SYP43 PE=2 SV=2 Back     alignment and function desciption
 Score =  384 bits (985), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/224 (83%), Positives = 206/224 (91%), Gaps = 2/224 (0%)

Query: 22  SRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLT 81
           SRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSFGDGKEDQH IE+LT
Sbjct: 75  SRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSFGDGKEDQHQIETLT 134

Query: 82  QEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQ 141
           QE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 
Sbjct: 135 QEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRL 194

Query: 142 QKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESV 201
           QKE  DG DLEMNLNG R + EDDD DDMVF+EHQM+K+KKSE  ++ERE+EIQQVVESV
Sbjct: 195 QKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSEEISIEREKEIQQVVESV 252

Query: 202 NELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
           +ELAQIMKDLS LVIDQGTIVDRIDYNIQNVA+TVD+GLKQLQK
Sbjct: 253 SELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQLQK 296
Vesicle trafficking protein that functions in the secretory pathway.
Arabidopsis thaliana (taxid: 3702)
>sp|O65359|SYP41_ARATH Syntaxin-41 OS=Arabidopsis thaliana GN=SYP41 PE=1 SV=1 Back     alignment and function description
>sp|Q9SWH4|SYP42_ARATH Syntaxin-42 OS=Arabidopsis thaliana GN=SYP42 PE=1 SV=1 Back     alignment and function description
>sp|O14662|STX16_HUMAN Syntaxin-16 OS=Homo sapiens GN=STX16 PE=1 SV=3 Back     alignment and function description
>sp|Q8BVI5|STX16_MOUSE Syntaxin-16 OS=Mus musculus GN=Stx16 PE=1 SV=3 Back     alignment and function description
>sp|Q9P6P1|TLG2_SCHPO t-SNARE affecting a late Golgi compartment protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tlg2 PE=3 SV=1 Back     alignment and function description
>sp|Q08144|TLG2_YEAST T-SNARE affecting a late Golgi compartment protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TLG2 PE=1 SV=1 Back     alignment and function description
>sp|P93654|SYP22_ARATH Syntaxin-22 OS=Arabidopsis thaliana GN=SYP22 PE=1 SV=1 Back     alignment and function description
>sp|O94651|PEP12_SCHPO Syntaxin pep12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pep12 PE=1 SV=2 Back     alignment and function description
>sp|P61268|STX1B_SHEEP Syntaxin-1B OS=Ovis aries GN=STX1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
356576833326 PREDICTED: syntaxin-43-like [Glycine max 0.995 0.748 0.805 1e-110
224125054337 predicted protein [Populus trichocarpa] 0.914 0.664 0.866 1e-110
359487528327 PREDICTED: syntaxin-43-like [Vitis vinif 0.914 0.685 0.866 1e-109
357441835 376 Syntaxin [Medicago truncatula] gi|355480 0.897 0.585 0.863 1e-109
356535028326 PREDICTED: syntaxin-43-like [Glycine max 0.995 0.748 0.793 1e-109
255542836323 syntaxin, putative [Ricinus communis] gi 0.914 0.693 0.897 1e-109
224123692324 predicted protein [Populus trichocarpa] 0.906 0.685 0.857 1e-108
449454046329 PREDICTED: syntaxin-43-like [Cucumis sat 0.914 0.680 0.862 1e-108
449490865329 PREDICTED: syntaxin-43-like [Cucumis sat 0.914 0.680 0.862 1e-108
218744538324 syntaxin [Nicotiana tabacum] 0.914 0.691 0.883 1e-105
>gi|356576833|ref|XP_003556534.1| PREDICTED: syntaxin-43-like [Glycine max] Back     alignment and taxonomy information
 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/252 (80%), Positives = 225/252 (89%), Gaps = 8/252 (3%)

Query: 1   MHFAVKFFIWGNETDANVSC-----CSRG--AVTVGLPPAWVDVSEEIATNVQRARTKMA 53
           +  A   F+  N + A +S       SRG  A+TVGLPPAWVD+SEEI+ NVQRARTKMA
Sbjct: 41  IELATTSFLNPNRSYAPLSTEDPGNSSRGPNAITVGLPPAWVDLSEEISANVQRARTKMA 100

Query: 54  ELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNVRKNV 113
           ELA+AH+KALMPSFGDGKEDQ AIE+LT EIT+++K+SEKRL++LSA GPSEDSNVRKNV
Sbjct: 101 ELAKAHSKALMPSFGDGKEDQRAIETLTHEITDLIKKSEKRLRRLSATGPSEDSNVRKNV 160

Query: 114 QRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFN 173
           QRSLATDLQNLS+ELRKKQSTYLKRLRQQKEGQDGVDLEM LNG +SR EDDDLD+MVFN
Sbjct: 161 QRSLATDLQNLSVELRKKQSTYLKRLRQQKEGQDGVDLEM-LNGSKSRYEDDDLDNMVFN 219

Query: 174 EHQMAKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVA 233
           EHQMAKLK SEAFTVERE+EIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVA
Sbjct: 220 EHQMAKLKNSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVA 279

Query: 234 TTVDEGLKQLQK 245
           TTV++GLKQLQK
Sbjct: 280 TTVEDGLKQLQK 291

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224125054|ref|XP_002319491.1| predicted protein [Populus trichocarpa] gi|222857867|gb|EEE95414.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359487528|ref|XP_002282882.2| PREDICTED: syntaxin-43-like [Vitis vinifera] gi|296089745|emb|CBI39564.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357441835|ref|XP_003591195.1| Syntaxin [Medicago truncatula] gi|355480243|gb|AES61446.1| Syntaxin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356535028|ref|XP_003536051.1| PREDICTED: syntaxin-43-like [Glycine max] Back     alignment and taxonomy information
>gi|255542836|ref|XP_002512481.1| syntaxin, putative [Ricinus communis] gi|223548442|gb|EEF49933.1| syntaxin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224123692|ref|XP_002330184.1| predicted protein [Populus trichocarpa] gi|222871640|gb|EEF08771.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449454046|ref|XP_004144767.1| PREDICTED: syntaxin-43-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449490865|ref|XP_004158729.1| PREDICTED: syntaxin-43-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|218744538|dbj|BAH03478.1| syntaxin [Nicotiana tabacum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query245
TAIR|locus:2078042331 SYP43 "syntaxin of plants 43" 0.906 0.670 0.776 1.6e-86
TAIR|locus:2148513322 SYP41 "syntaxin of plants 41" 0.902 0.686 0.767 4.4e-84
TAIR|locus:505006427323 SYP42 "syntaxin of plants 42" 0.914 0.693 0.653 2e-72
UNIPROTKB|F1NSX3331 STX16 "Uncharacterized protein 0.881 0.652 0.362 7.7e-32
UNIPROTKB|E2RR62297 STX16 "Uncharacterized protein 0.881 0.727 0.348 1.6e-29
UNIPROTKB|E2RR72326 STX16 "Uncharacterized protein 0.881 0.662 0.348 1.6e-29
UNIPROTKB|J9P6Z4273 STX16 "Uncharacterized protein 0.881 0.791 0.348 1.6e-29
ZFIN|ZDB-GENE-060810-113324 stx16 "syntaxin 16" [Danio rer 0.877 0.663 0.349 3.4e-29
UNIPROTKB|B7ZBM7251 STX16 "Syntaxin-16" [Homo sapi 0.881 0.860 0.353 4.4e-29
UNIPROTKB|C9K0W8308 STX16 "Uncharacterized protein 0.881 0.701 0.353 4.4e-29
TAIR|locus:2078042 SYP43 "syntaxin of plants 43" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
 Identities = 174/224 (77%), Positives = 192/224 (85%)

Query:    22 SRGAVTVGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLT 81
             SRG +TVGLPP WVDVSEEI+  +QRARTKMAEL +AHAKALMPSFGDGKEDQH IE+LT
Sbjct:    75 SRGTITVGLPPDWVDVSEEISVYIQRARTKMAELGKAHAKALMPSFGDGKEDQHQIETLT 134

Query:    82 QEITNILKRSEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQ 141
             QE+T +LK+SEK+LQ+LSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLR 
Sbjct:   135 QEVTFLLKKSEKQLQRLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRL 194

Query:   142 QKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTXXXXXXXXXXXXXX 201
             QKE  DG DLEMNLNG R + EDDD DDMVF+EHQM+K+KKSE  +              
Sbjct:   195 QKE--DGADLEMNLNGSRYKAEDDDFDDMVFSEHQMSKIKKSEEISIEREKEIQQVVESV 252

Query:   202 NELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
             +ELAQIMKDLS LVIDQGTIVDRIDYNIQNVA+TVD+GLKQLQK
Sbjct:   253 SELAQIMKDLSALVIDQGTIVDRIDYNIQNVASTVDDGLKQLQK 296
GO:0005484 "SNAP receptor activity" evidence=IEA;TAS
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0006886 "intracellular protein transport" evidence=IEA;TAS
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0006944 "cellular membrane fusion" evidence=RCA;TAS
GO:0005802 "trans-Golgi network" evidence=IDA
GO:0007030 "Golgi organization" evidence=IGI
GO:0007034 "vacuolar transport" evidence=IGI
GO:0009306 "protein secretion" evidence=IGI
GO:1900150 "regulation of defense response to fungus" evidence=IGI
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0005768 "endosome" evidence=IDA
TAIR|locus:2148513 SYP41 "syntaxin of plants 41" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006427 SYP42 "syntaxin of plants 42" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NSX3 STX16 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR62 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR72 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6Z4 STX16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060810-113 stx16 "syntaxin 16" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|B7ZBM7 STX16 "Syntaxin-16" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|C9K0W8 STX16 "Uncharacterized protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SUJ1SYP43_ARATHNo assigned EC number0.83030.90610.6706yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_XIII000051
hypothetical protein (337 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
COG5325283 COG5325, COG5325, t-SNARE complex subunit, syntaxi 2e-24
smart00503117 smart00503, SynN, Syntaxin N-terminal domain 1e-12
pfam0573962 pfam05739, SNARE, SNARE domain 6e-11
pfam00804103 pfam00804, Syntaxin, Syntaxin 2e-08
cd0019360 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se 2e-08
smart0039766 smart00397, t_SNARE, Helical region found in SNARE 4e-07
COG5074280 COG5074, COG5074, t-SNARE complex subunit, syntaxi 4e-04
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information 
 Score = 98.0 bits (244), Expect = 2e-24
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 7/222 (3%)

Query: 28  VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNI 87
             L P ++  +  +   +   R  ++ L + +AK   PSF D  E +  I+ L++++   
Sbjct: 30  DALTPTFILSAASVDQELTAVRRSISRLGKVYAKHTEPSFSDKSEKEDEIDELSKKVNQD 89

Query: 88  LKRSEK----RLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQK 143
           L+R EK    + + L ++          N +      +Q  S + RK Q    K LR + 
Sbjct: 90  LQRCEKILKTKYKNLQSSFLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKN 149

Query: 144 EGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQQVVESVNE 203
             Q  ++ E +     S      L     +  ++      +    ER+ EI+ +   + E
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEY---QQILITERDEEIKNLARGIYE 206

Query: 204 LAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
           L +I +DL  LV +QG +VDRID+NI+N +  +    K+L+K
Sbjct: 207 LNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEK 248

Length = 283
>gnl|CDD|214699 smart00503, SynN, Syntaxin N-terminal domain Back     alignment and domain information
>gnl|CDD|203323 pfam05739, SNARE, SNARE domain Back     alignment and domain information
>gnl|CDD|201451 pfam00804, Syntaxin, Syntaxin Back     alignment and domain information
>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>gnl|CDD|197699 smart00397, t_SNARE, Helical region found in SNAREs Back     alignment and domain information
>gnl|CDD|227406 COG5074, COG5074, t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 245
KOG0809305 consensus SNARE protein TLG2/Syntaxin 16 [Intracel 100.0
KOG0810297 consensus SNARE protein Syntaxin 1 and related pro 100.0
KOG0811269 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt 99.97
COG5325283 t-SNARE complex subunit, syntaxin [Intracellular t 99.92
COG5074280 t-SNARE complex subunit, syntaxin [Intracellular t 99.92
KOG0812311 consensus SNARE protein SED5/Syntaxin 5 [Intracell 99.79
smart00503117 SynN Syntaxin N-terminal domain. Three-helix domai 99.6
cd00179151 SynN Syntaxin N-terminus domain; syntaxins are ner 99.57
cd0019360 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu 99.52
PF0573963 SNARE: SNARE domain; InterPro: IPR000727 The proce 99.49
PF00804103 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins 99.49
smart0039766 t_SNARE Helical region found in SNAREs. All alpha- 99.42
PF14523102 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A. 99.2
KOG3202235 consensus SNARE protein TLG1/Syntaxin 6 [Intracell 97.27
KOG3894316 consensus SNARE protein Syntaxin 18/UFE1 [Intracel 94.23
KOG3065273 consensus SNAP-25 (synaptosome-associated protein) 91.72
PF0234657 Vac_Fusion: Chordopoxvirus fusion protein; InterPr 85.0
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=3e-38  Score=265.25  Aligned_cols=215  Identities=49%  Similarity=0.745  Sum_probs=191.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCh
Q 040750           29 GLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAAG---PSE  105 (245)
Q Consensus        29 ~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~---~~~  105 (245)
                      +.||.|.+.+++|+..+.+++.++.+|.+.|.+++.|+|+|.++.+.+|+.++.+|+++++.|++.|+.+...+   ++.
T Consensus        54 ~lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~  133 (305)
T KOG0809|consen   54 GLPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPS  133 (305)
T ss_pred             CCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChH
Confidence            57999999999999999999999999999999999999999998899999999999999999999999998865   345


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhhhhhhhHHHHHHHHhhHH
Q 040750          106 DSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEA  185 (245)
Q Consensus       106 ~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~q~~~~~~~~~  185 (245)
                      +..+++|.+..++.+++.++.+||..|..|.++++.+.++...+  +.++.+.....+++++.+..|+++|+.....+..
T Consensus       134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~--e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~  211 (305)
T KOG0809|consen  134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEY--EDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEE  211 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccch--hhhccccccCcchhhhhhhhHHHHHHHHHhcchH
Confidence            66689999999999999999999999999999999998865432  2222222222346677788888888777777889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750          186 FTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK  245 (245)
Q Consensus       186 ~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K  245 (245)
                      .+++|++||.+|.+||.||++||+||+.||.+||++||||||||+++..+|+.|.++|.|
T Consensus       212 ~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~K  271 (305)
T KOG0809|consen  212 VVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHK  271 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999986

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>smart00503 SynN Syntaxin N-terminal domain Back     alignment and domain information
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain Back     alignment and domain information
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent Back     alignment and domain information
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ] Back     alignment and domain information
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane Back     alignment and domain information
>smart00397 t_SNARE Helical region found in SNAREs Back     alignment and domain information
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A Back     alignment and domain information
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query245
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 5e-32
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 9e-32
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 3e-22
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 9e-18
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 5e-17
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 2e-16
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 4e-16
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 5e-16
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 7e-15
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 8e-15
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Length = 279 Back     alignment and structure
 Score =  117 bits (294), Expect = 5e-32
 Identities = 40/230 (17%), Positives = 97/230 (42%), Gaps = 15/230 (6%)

Query: 30  LPPAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNIL 88
               + +  + I  N++     + ++A+ H ++L+  S  D       ++     I+ + 
Sbjct: 42  FMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALG 101

Query: 89  KRSEKRLQQLSAA-------------GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTY 135
            +    L+Q+                  S D  +R++   SL+     +       Q+  
Sbjct: 102 NKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAEN 161

Query: 136 LKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTVEREREIQ 195
            +R  +    Q  V +E +L+    +   +   + +F+  ++   +       +R ++IQ
Sbjct: 162 KRRYGENVARQCRV-VEPSLSDDAIQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQ 220

Query: 196 QVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK 245
           Q+  S+ EL ++  D+S LV  QG ++DRI+++++     V +  +Q+ +
Sbjct: 221 QLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQ 270
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 3c98_B Length = 267 Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Length = 196 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Length = 65 Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Length = 71 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Length = 68 Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Length = 69 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Length = 77 Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Length = 109 Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Length = 83 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
1dn1_B267 Syntaxin 1A, syntaxin binding protein 1; protein-p 100.0
2xhe_B279 Syntaxin1; exocytosis, exocytosis complex, snare, 100.0
1fio_A196 SSO1 protein; four helix bundle, alpha helix, memb 99.96
1n7s_B68 Syntaxin 1A; neuronal snare protein complex, four 99.88
3b5n_B69 Protein SSO1; snare complex, syntaxin, synaptobrev 99.88
1gl2_B65 Syntaxin 7; membrane protein, membrane fusion prot 99.87
1jth_B77 Syntaxin 1A; coiled-coil, polar layer, endocytosis 99.87
1sfc_B83 Protein (syntaxin 1A), protein (synaptobrevin 2); 99.86
2nps_B71 Syntaxin 13, vesicle-associated membrane protein 4 99.85
3hd7_B109 Syntaxin-1A; membrane protein, coiled-coil, 4-heli 99.82
3c98_B279 Syntaxin-1A; protein complex, alternative splicing 99.78
1ez3_A127 Syntaxin-1A; three helix bundle, endocytosis/exocy 99.69
1s94_A180 S-syntaxin; three helix bundle, structural plastic 99.59
2dnx_A130 Syntaxin-12; snare, HABC domain, UP and DOWN three 99.52
1hs7_A97 Syntaxin VAM3; UP-and-DOWN three-helix bundle inse 98.51
1gl2_D65 Syntaxin 8, vesicle transport V-snare protein VTI1 96.82
1n7s_D66 SNAP-25A; neuronal snare protein complex, four hel 96.76
2nps_D82 Syntaxin-6; vesicle fusion, snare complex, early e 96.61
1sfc_D87 Protein (SNAP-25B), protein (synaptobrevin 2); mem 96.6
1nhl_A54 Synaptosomal-associated protein 23; snare, coiled- 96.57
3b5n_D64 Protein transport protein SEC9; snare complex, syn 95.85
1l4a_D87 S-SNAP25 fusion protein; snare, snare complex, mem 95.68
1n7s_C79 SNAP-25A; neuronal snare protein complex, four hel 95.6
3b5n_C70 Protein transport protein SEC9; snare complex, syn 95.13
1l4a_C83 S-SNAP25 fusion protein; snare, snare complex, mem 94.99
4dnd_A130 Syntaxin-10, SYN10; structural genomics, protein s 89.55
2c5k_T95 Syntaxin TLG1, T-snare affecting A late golgi comp 87.4
1gl2_C65 VTI1B, vesicle transport V-snare protein VTI1-like 85.8
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B Back     alignment and structure
Probab=100.00  E-value=2.9e-36  Score=258.82  Aligned_cols=209  Identities=21%  Similarity=0.355  Sum_probs=168.7

Q ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc------
Q 040750           28 VGLPPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFGDGKEDQHAIESLTQEITNILKRSEKRLQQLSAA------  101 (245)
Q Consensus        28 ~~~~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~------  101 (245)
                      .++||.|+..|++|+..|..|..++.+|.++|.+.+. +..+...++.+|+.++.+|+.+++.|+..|+.|...      
T Consensus        27 ~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~-~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~  105 (267)
T 1dn1_B           27 DRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILA-SPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEG  105 (267)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            5689999999999999999999999999999987654 444445788999999999999999999999998653      


Q ss_pred             --CCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCCCCCchhh-------hhhh
Q 040750          102 --GPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSRMEDDDLD-------DMVF  172 (245)
Q Consensus       102 --~~~~~~~i~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~-------~~~~  172 (245)
                        +++.+.|++++++..|+.+|+++|..|+..|..|+++++.+..|+..+.. +.+       .++++.       ..+|
T Consensus       106 ~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~-~~~-------tdeeie~~ie~g~~~~f  177 (267)
T 1dn1_B          106 LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITG-RTT-------TSEELEDMLESGNPAIF  177 (267)
T ss_dssp             TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCC-------CHHHHHHHHHTCSSCTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccC-CCC-------CHHHHHHHHhCCcHHHH
Confidence              34567799999999999999999999999999999999988776422110 111       111111       1134


Q ss_pred             hHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhHHHHHHhhHHHHHHHHHHHHHhhhC
Q 040750          173 NEHQM---AKLKKSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNVATTVDEGLKQLQK  245 (245)
Q Consensus       173 ~q~q~---~~~~~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQGe~ID~Ie~Nve~a~~~ve~g~~eL~K  245 (245)
                      ++..+   ..+...+.+|++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|..||+.|+.+|.|
T Consensus       178 ~q~~l~~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~k  253 (267)
T 1dn1_B          178 ASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKK  253 (267)
T ss_dssp             TTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33211   23456788999999999999999999999999999999999999999999999999999999999975
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis} Back     alignment and structure
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B Back     alignment and structure
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B Back     alignment and structure
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B Back     alignment and structure
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus} Back     alignment and structure
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B Back     alignment and structure
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} Back     alignment and structure
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A* Back     alignment and structure
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1 Back     alignment and structure
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1 Back     alignment and structure
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Back     alignment and structure
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Back     alignment and structure
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Back     alignment and structure
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1 Back     alignment and structure
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A Back     alignment and structure
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1 Back     alignment and structure
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1 Back     alignment and structure
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A Back     alignment and structure
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T Back     alignment and structure
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 245
d1fioa_196 a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces c 8e-23
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.8 bits (222), Expect = 8e-23
 Identities = 27/193 (13%), Positives = 75/193 (38%), Gaps = 8/193 (4%)

Query: 32  PAWVDVSEEIATNVQRARTKMAELARAHAKALM-PSFGDGKEDQHAIESLTQEITNILKR 90
             +++   +I  ++ +    + ++   H + L   +       +H++++   + T++  +
Sbjct: 5   VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFK 64

Query: 91  SEKRLQQLSAAGPSEDSNVRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVD 150
            +  ++             ++    +       L  + R   S Y +  ++Q + Q  + 
Sbjct: 65  LKNEIKSAQRD--GIHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMII 122

Query: 151 LEMNLNGGRSRMEDDDLDDMVFNEHQMAKLKKSEAFTV-----EREREIQQVVESVNELA 205
                         D     +F++  +   ++ EA T       R +E+ ++ +S+ EL 
Sbjct: 123 QPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELT 182

Query: 206 QIMKDLSVLVIDQ 218
           Q+  D+  LVI+Q
Sbjct: 183 QLFNDMEELVIEQ 195

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query245
d1fioa_196 Sso1 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.91
d1ez3a_124 Syntaxin 1A N-terminal domain {Rat (Rattus norvegi 99.63
d1hs7a_97 Vam3p N-terminal domain {Baker's yeast (Saccharomy 97.26
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Sso1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.5e-24  Score=172.63  Aligned_cols=183  Identities=15%  Similarity=0.241  Sum_probs=138.8

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CChHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhH
Q 040750           31 PPAWVDVSEEIATNVQRARTKMAELARAHAKALMPSFG-DGKEDQHAIESLTQEITNILKRSEKRLQQLSAAGPSEDSNV  109 (245)
Q Consensus        31 ~~~f~~~~~~i~~~i~~i~~~i~~L~~l~~~~l~~~~~-d~~~~~~~I~~~~~~i~~~~~~~~~~lk~l~~~~~~~~~~i  109 (245)
                      ++.|++.+++|+..|..|+..+..|.+++.+.+..+.. +...++..|+.++.+++.+++.|+..++.+...++..  ++
T Consensus         4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~~~~~~~~~~~--~~   81 (196)
T d1fioa_           4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDGIHD--TN   81 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch--HH
Confidence            57899999999999999999999999999875432221 1245678899999999999999999999998765433  78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccCCCCCCC---CCCchhhhhhhhHH-----HHHHHH
Q 040750          110 RKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEGQDGVDLEMNLNGGRSR---MEDDDLDDMVFNEH-----QMAKLK  181 (245)
Q Consensus       110 ~~n~~~~L~~~f~~~~~~f~~~Q~~y~~~~k~~~~~~~~~~~~~~~~~~~~~---~~~e~~~~~~~~q~-----q~~~~~  181 (245)
                      ++++..+|..+|..++..|+..|..|.++++.+..+...+   .++......   ...+......+.+.     ...++.
T Consensus        82 ~~~~~~~l~~~l~~~~~~f~~~q~~~~~~~k~~~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (196)
T d1fioa_          82 KQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI---IQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAK  158 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cCCCccchhhhHhhccccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998887654221   111111000   00011111122221     112456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Q 040750          182 KSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQ  218 (245)
Q Consensus       182 ~~~~~i~eR~~eI~~Ie~sI~EL~~iF~dLa~LV~eQ  218 (245)
                      ..+.++++|+++|.+||++|.|||+||.|||+||++|
T Consensus       159 ~~~~~i~eR~~eI~~Ie~sI~eL~~iF~dLa~LV~eQ  195 (196)
T d1fioa_         159 TALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQ  195 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc
Confidence            6788999999999999999999999999999999998
>d1ez3a_ a.47.2.1 (A:) Syntaxin 1A N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hs7a_ a.47.2.1 (A:) Vam3p N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure