Citrus Sinensis ID: 040755

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MSTPDIIQVEEGNEPCTTPASTKCSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSFSRPP
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccEEEEEHHHHHHHHHHHHHHHHcccccccccccccccccccccccc
cccHccEEEcccccccEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHEEEEEEEEEEEEEEEHcccccHccHcccccHHHHHHHHHHHHHHcccccccccccccccHEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccc
mstpdiiqveegnepcttpastkcskisdarnsspspVLQLLQKAIAEVIGTYFLIFTGCgsvavnkiygsvtfpgiCVVWGLIVMVMIYSVghisgahfnpavTITFAIFrhfprkqvpIYIVAQLLGSVLASGslylifdvkdeaffgtipvgtnVQSFVLEIIISFLLMFVISGvatdnrsigELAGIAIGMTILLNVLVagpvsgasmnparslgpaIVMHQYKGLWVYIAGPIIGTILGGLAYnmirftdkplreitksgsflksfsrpp
mstpdiiqveegnepcttpastkcskisdarNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLreitksgsflksfsrpp
MSTPDIIQVEEGNEPCTTPASTKCSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSFSRPP
*************************************VLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLR****************
*************************************VLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIR***********************
MSTPDIIQVEEGN***********************PVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSF********
********V******************SDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKS*****
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHiiiRRRRRRRRRRRRRRRRRRRiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooRRRRRRRRRRRRRRRRoooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTPDIIQVEEGNEPCTTPASTKCSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSFSRPP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
P49173270 Probable aquaporin NIP-ty N/A no 0.934 0.951 0.684 1e-102
Q8W036283 Probable aquaporin NIP4-2 yes no 0.952 0.925 0.655 5e-95
Q9FIZ9283 Putative aquaporin NIP4-1 no no 0.869 0.844 0.705 5e-94
Q40746284 Aquaporin NIP1-1 OS=Oryza yes no 0.847 0.820 0.666 8e-87
Q8LFP7294 Aquaporin NIP1-2 OS=Arabi no no 0.938 0.877 0.605 7e-86
P08995271 Nodulin-26 OS=Glycine max no no 0.898 0.911 0.592 3e-84
Q0DK16286 Aquaporin NIP1-3 OS=Oryza no no 0.956 0.919 0.585 3e-82
Q9ATN4282 Aquaporin NIP1-1 OS=Zea m N/A no 0.847 0.826 0.653 3e-81
Q8VZW1296 Aquaporin NIP1-1 OS=Arabi no no 0.945 0.878 0.558 2e-80
Q0JPT5303 Aquaporin NIP1-2 OS=Oryza no no 0.810 0.735 0.608 6e-79
>sp|P49173|NIP1_NICAL Probable aquaporin NIP-type OS=Nicotiana alata PE=2 SV=1 Back     alignment and function desciption
 Score =  372 bits (954), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/269 (68%), Positives = 220/269 (81%), Gaps = 12/269 (4%)

Query: 5   DIIQVEEGNEPCTTPASTK---CSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCG 61
           +I Q+EEGN    + + +    CS +S         V+ +LQK IAE IGTYF+IF GCG
Sbjct: 11  EISQMEEGNIHSASNSDSNVGFCSSVS---------VVVILQKLIAEAIGTYFVIFAGCG 61

Query: 62  SVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPI 121
           SVAVNKIYGSVTFPGICV WGLIVMVM+Y+VG+ISGAHFNPAVTITF+IF  FP KQVP+
Sbjct: 62  SVAVNKIYGSVTFPGICVTWGLIVMVMVYTVGYISGAHFNPAVTITFSIFGRFPWKQVPL 121

Query: 122 YIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATD 181
           YI+AQL+GS+LASG+L L+FDV  +A+FGT+PVG+N QS  +EIIISFLLMFVISGVATD
Sbjct: 122 YIIAQLMGSILASGTLALLFDVTPQAYFGTVPVGSNGQSLAIEIIISFLLMFVISGVATD 181

Query: 182 NRSIGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGT 241
           +R+IG++AGIA+GMTI LNV VAGP+SGASMNPARS+GPAIV H Y GLWVY+ GPIIGT
Sbjct: 182 DRAIGQVAGIAVGMTITLNVFVAGPISGASMNPARSIGPAIVKHVYTGLWVYVVGPIIGT 241

Query: 242 ILGGLAYNMIRFTDKPLREITKSGSFLKS 270
           + G   YN+IR TDKPLRE+ KS S L+S
Sbjct: 242 LAGAFVYNLIRSTDKPLRELAKSASSLRS 270
Aquaporins facilitate the transport of water and small neutral solutes across cell membranes.
Nicotiana alata (taxid: 4087)
>sp|Q8W036|NIP42_ARATH Probable aquaporin NIP4-2 OS=Arabidopsis thaliana GN=NIP4-2 PE=2 SV=2 Back     alignment and function description
>sp|Q9FIZ9|NIP41_ARATH Putative aquaporin NIP4-1 OS=Arabidopsis thaliana GN=NIP4-1 PE=3 SV=1 Back     alignment and function description
>sp|Q40746|NIP11_ORYSJ Aquaporin NIP1-1 OS=Oryza sativa subsp. japonica GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8LFP7|NIP12_ARATH Aquaporin NIP1-2 OS=Arabidopsis thaliana GN=NIP1-2 PE=1 SV=2 Back     alignment and function description
>sp|P08995|NO26_SOYBN Nodulin-26 OS=Glycine max PE=1 SV=2 Back     alignment and function description
>sp|Q0DK16|NIP13_ORYSJ Aquaporin NIP1-3 OS=Oryza sativa subsp. japonica GN=NIP1-3 PE=3 SV=2 Back     alignment and function description
>sp|Q9ATN4|NIP11_MAIZE Aquaporin NIP1-1 OS=Zea mays GN=NIP1-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8VZW1|NIP11_ARATH Aquaporin NIP1-1 OS=Arabidopsis thaliana GN=NIP1-1 PE=1 SV=1 Back     alignment and function description
>sp|Q0JPT5|NIP12_ORYSJ Aquaporin NIP1-2 OS=Oryza sativa subsp. japonica GN=NIP1-2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
224108337263 aquaporin, MIP family, NIP subfamily [Po 0.934 0.977 0.763 1e-109
224069322279 aquaporin, MIP family, NIP subfamily [Po 0.974 0.960 0.699 1e-102
1346736270 RecName: Full=Probable aquaporin NIP-typ 0.934 0.951 0.684 1e-100
296087168 466 unnamed protein product [Vitis vinifera] 0.967 0.570 0.653 2e-98
449464154269 PREDICTED: probable aquaporin NIP-type-l 0.88 0.899 0.719 2e-98
359488123281 PREDICTED: probable aquaporin NIP-type-l 0.967 0.946 0.653 3e-98
449518356269 PREDICTED: probable aquaporin NIP-type-l 0.88 0.899 0.714 1e-97
255570110367 Nodulin-26, putative [Ricinus communis] 0.821 0.615 0.784 9e-96
15240348283 putative aquaporin NIP4-2 [Arabidopsis t 0.952 0.925 0.655 3e-93
297801320283 predicted protein [Arabidopsis lyrata su 0.967 0.939 0.645 6e-93
>gi|224108337|ref|XP_002314811.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222863851|gb|EEF00982.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/258 (76%), Positives = 225/258 (87%), Gaps = 1/258 (0%)

Query: 13  NEPCTTPASTKCSKISDARNSSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSV 72
           NE        K ++ SD  +S P   +Q++QK IAE+IGT+FLIF GCGSV VN++YGSV
Sbjct: 5   NEFGDDTEGGKKTESSD-EDSPPETTVQIIQKIIAEMIGTFFLIFMGCGSVVVNQMYGSV 63

Query: 73  TFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVL 132
           TFPG+CVVWGLIVMVM+YSVGHISGAHFNPAVT+TFAIFRHFP KQVP+YI AQLLGS+L
Sbjct: 64  TFPGVCVVWGLIVMVMVYSVGHISGAHFNPAVTVTFAIFRHFPYKQVPLYIAAQLLGSLL 123

Query: 133 ASGSLYLIFDVKDEAFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIA 192
           ASG+L L+F V DEA+FGTIPVG +++SFV EIIISFLLMFVISGVATDNR+IGELAGIA
Sbjct: 124 ASGTLSLLFSVTDEAYFGTIPVGPDIRSFVTEIIISFLLMFVISGVATDNRAIGELAGIA 183

Query: 193 IGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIR 252
           +GMTI+LNV VAGPVSGASMNPARSLGPAIVM Q+KG+WVYI GP IGTILG L YN+IR
Sbjct: 184 VGMTIMLNVFVAGPVSGASMNPARSLGPAIVMRQFKGIWVYIVGPPIGTILGALCYNIIR 243

Query: 253 FTDKPLREITKSGSFLKS 270
           FTDKPLREITK+ SFLKS
Sbjct: 244 FTDKPLREITKTASFLKS 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224069322|ref|XP_002302955.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] gi|222844681|gb|EEE82228.1| aquaporin, MIP family, NIP subfamily [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1346736|sp|P49173.1|NIP1_NICAL RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein gi|665948|gb|AAA62235.1| putative membrane integral protein [Nicotiana alata] Back     alignment and taxonomy information
>gi|296087168|emb|CBI33542.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449464154|ref|XP_004149794.1| PREDICTED: probable aquaporin NIP-type-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359488123|ref|XP_003633704.1| PREDICTED: probable aquaporin NIP-type-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518356|ref|XP_004166208.1| PREDICTED: probable aquaporin NIP-type-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255570110|ref|XP_002526017.1| Nodulin-26, putative [Ricinus communis] gi|223534664|gb|EEF36357.1| Nodulin-26, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15240348|ref|NP_198598.1| putative aquaporin NIP4-2 [Arabidopsis thaliana] gi|32363363|sp|Q8W036.2|NIP42_ARATH RecName: Full=Probable aquaporin NIP4-2; AltName: Full=NOD26-like intrinsic protein 4-2; Short=AtNIP4;2; AltName: Full=Nodulin-26-like major intrinsic protein 5; Short=NodLikeMip5; Short=Protein NLM5 gi|10177172|dbj|BAB10361.1| pollen-specific membrane integral protein [Arabidopsis thaliana] gi|332006853|gb|AED94236.1| putative aquaporin NIP4-2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297801320|ref|XP_002868544.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297314380|gb|EFH44803.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
TAIR|locus:2156025283 NIP4;2 "NOD26-like intrinsic p 0.872 0.848 0.710 4.6e-89
TAIR|locus:2156020283 NIP4;1 "NOD26-like intrinsic p 0.869 0.844 0.705 1.6e-88
TAIR|locus:2117184294 NIP1;2 "NOD26-like intrinsic p 0.938 0.877 0.605 1.1e-80
TAIR|locus:2117119296 NLM1 "NOD26-like major intrins 0.872 0.810 0.600 5e-76
TAIR|locus:2826185323 NIP3;1 "NOD26-like intrinsic p 0.861 0.733 0.540 1.8e-64
TAIR|locus:2040904288 NIP2;1 "NOD26-like intrinsic p 0.981 0.937 0.439 3.2e-58
TAIR|locus:2025822305 NIP6;1 "NOD26-like intrinsic p 0.807 0.727 0.491 3.8e-53
UNIPROTKB|Q6Z2T3298 NIP2-1 "Aquaporin NIP2-1" [Ory 0.785 0.724 0.472 4.4e-52
TAIR|locus:2122829304 NIP5;1 "NOD26-like intrinsic p 0.850 0.769 0.466 4e-51
TAIR|locus:2082385275 NIP7;1 "NOD26-like intrinsic p 0.909 0.909 0.380 7.3e-43
TAIR|locus:2156025 NIP4;2 "NOD26-like intrinsic protein 4;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 889 (318.0 bits), Expect = 4.6e-89, P = 4.6e-89
 Identities = 172/242 (71%), Positives = 204/242 (84%)

Query:    33 SSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYG-SVTFPGICVVWGLIVMVMIYS 91
             SSPS ++ L QK IAE+IGTYF+IF+GCG V VN +YG ++TFPGICV WGLIVMVMIYS
Sbjct:    34 SSPS-IVCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYS 92

Query:    92 VGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGT 151
              GHISGAHFNPAVT+TFA+FR FP  QVP+YI AQL GS+LAS +L L+F+V  +AFFGT
Sbjct:    93 TGHISGAHFNPAVTVTFAVFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPKAFFGT 152

Query:   152 IPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGAS 211
              P  ++ Q+ V EIIISFLLMFVISGVATD+R+ GELAGIA+GMTI+LNV VAGP+SGAS
Sbjct:   153 TPTDSSGQALVAEIIISFLLMFVISGVATDSRATGELAGIAVGMTIILNVFVAGPISGAS 212

Query:   212 MNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSF 271
             MNPARSLGPAIVM +YKG+WVYI GP +G   GG  YN +RFTDKPLRE+TKS SFL+S 
Sbjct:   213 MNPARSLGPAIVMGRYKGIWVYIVGPFVGIFAGGFVYNFMRFTDKPLRELTKSASFLRSV 272

Query:   272 SR 273
             ++
Sbjct:   273 AQ 274
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA;ISS
GO:0006833 "water transport" evidence=IEA
GO:0015250 "water channel activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
TAIR|locus:2156020 NIP4;1 "NOD26-like intrinsic protein 4;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117184 NIP1;2 "NOD26-like intrinsic protein 1;2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117119 NLM1 "NOD26-like major intrinsic protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2826185 NIP3;1 "NOD26-like intrinsic protein 3;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040904 NIP2;1 "NOD26-like intrinsic protein 2;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025822 NIP6;1 "NOD26-like intrinsic protein 6;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z2T3 NIP2-1 "Aquaporin NIP2-1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2122829 NIP5;1 "NOD26-like intrinsic protein 5;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082385 NIP7;1 "NOD26-like intrinsic protein 7;1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q40746NIP11_ORYSJNo assigned EC number0.66660.84720.8204yesno
P49173NIP1_NICALNo assigned EC number0.68400.93450.9518N/Ano
Q9ATN4NIP11_MAIZENo assigned EC number0.65380.84720.8262N/Ano
Q9V5Z7AQP_DROMENo assigned EC number0.34480.80360.9020yesno
Q9FIZ9NIP41_ARATHNo assigned EC number0.70530.86900.8445nono
Q7PWV1AQP_ANOGANo assigned EC number0.35120.81810.9yesno
Q8W036NIP42_ARATHNo assigned EC number0.65550.95270.9257yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00101059
aquaporin, MIP family, NIP subfamily (263 aa)
(Populus trichocarpa)
Predicted Functional Partners:
fgenesh4_pm.C_scaffold_44000008
glycerol kinase (EC-2.7.1.30) (519 aa)
•     • 0.441

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
PLN00182283 PLN00182, PLN00182, putative aquaporin NIP4; Provi 1e-134
PLN00184296 PLN00184, PLN00184, aquaporin NIP1; Provisional 1e-107
PLN00026298 PLN00026, PLN00026, aquaporin NIP; Provisional 1e-72
pfam00230218 pfam00230, MIP, Major intrinsic protein 2e-64
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 9e-63
TIGR00861216 TIGR00861, MIP, MIP family channel proteins 2e-61
PLN00183274 PLN00183, PLN00183, putative aquaporin NIP7; Provi 3e-61
COG0580241 COG0580, GlpF, Glycerol uptake facilitator and rel 2e-58
PRK05420231 PRK05420, PRK05420, aquaporin Z; Provisional 2e-47
PTZ00016294 PTZ00016, PTZ00016, aquaglyceroporin; Provisional 2e-33
PLN00166250 PLN00166, PLN00166, aquaporin TIP2; Provisional 6e-30
PLN00027252 PLN00027, PLN00027, aquaporin TIP; Provisional 1e-29
PLN00167256 PLN00167, PLN00167, aquaporin TIP5; Provisional 3e-22
cd00333228 cd00333, MIP, Major intrinsic protein (MIP) superf 2e-08
>gnl|CDD|165748 PLN00182, PLN00182, putative aquaporin NIP4; Provisional Back     alignment and domain information 
 Score =  379 bits (974), Expect = e-134
 Identities = 177/242 (73%), Positives = 206/242 (85%), Gaps = 2/242 (0%)

Query: 33  SSPSPVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIY-GSVTFPGICVVWGLIVMVMIYS 91
           +SPS V  L QK IAE+IGTYF+IF+GCG V VN +Y G++TFPGICV WGLIVMVMIYS
Sbjct: 34  TSPSIVC-LTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYS 92

Query: 92  VGHISGAHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGT 151
            GHISGAHFNPAVT+TFAIFR FP  QVP+YI AQL GS+LAS +L L+F+V  EAFFGT
Sbjct: 93  TGHISGAHFNPAVTVTFAIFRRFPWYQVPLYIGAQLTGSLLASLTLRLMFNVTPEAFFGT 152

Query: 152 IPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAGPVSGAS 211
            P  ++ Q+ V EIIISFLLMFVISGVATD+R++GELAGIA+GMTI+LNV VAGP+SGAS
Sbjct: 153 TPTDSSGQALVAEIIISFLLMFVISGVATDSRAVGELAGIAVGMTIILNVFVAGPISGAS 212

Query: 212 MNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLKSF 271
           MNPARSLGPAIVM +YKG+WVYI GP +G I GG  YN+IRFTDKPLRE+TKS SFL+S 
Sbjct: 213 MNPARSLGPAIVMGRYKGIWVYIVGPFVGIIAGGFVYNLIRFTDKPLRELTKSASFLRSV 272

Query: 272 SR 273
           S+
Sbjct: 273 SQ 274

Length = 283
>gnl|CDD|177778 PLN00184, PLN00184, aquaporin NIP1; Provisional Back     alignment and domain information
>gnl|CDD|177663 PLN00026, PLN00026, aquaporin NIP; Provisional Back     alignment and domain information
>gnl|CDD|215807 pfam00230, MIP, Major intrinsic protein Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>gnl|CDD|233156 TIGR00861, MIP, MIP family channel proteins Back     alignment and domain information
>gnl|CDD|215092 PLN00183, PLN00183, putative aquaporin NIP7; Provisional Back     alignment and domain information
>gnl|CDD|223653 COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235453 PRK05420, PRK05420, aquaporin Z; Provisional Back     alignment and domain information
>gnl|CDD|240230 PTZ00016, PTZ00016, aquaglyceroporin; Provisional Back     alignment and domain information
>gnl|CDD|165733 PLN00166, PLN00166, aquaporin TIP2; Provisional Back     alignment and domain information
>gnl|CDD|177664 PLN00027, PLN00027, aquaporin TIP; Provisional Back     alignment and domain information
>gnl|CDD|215085 PLN00167, PLN00167, aquaporin TIP5; Provisional Back     alignment and domain information
>gnl|CDD|238204 cd00333, MIP, Major intrinsic protein (MIP) superfamily Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
PLN00184296 aquaporin NIP1; Provisional 100.0
KOG0223238 consensus Aquaporin (major intrinsic protein famil 100.0
PLN00182283 putative aquaporin NIP4; Provisional 100.0
PLN00026298 aquaporin NIP; Provisional 100.0
KOG0224316 consensus Aquaporin (major intrinsic protein famil 100.0
COG0580241 GlpF Glycerol uptake facilitator and related perme 100.0
PTZ00016294 aquaglyceroporin; Provisional 100.0
PRK05420231 aquaporin Z; Provisional 100.0
PLN00027252 aquaporin TIP; Provisional 100.0
PLN00166250 aquaporin TIP2; Provisional 100.0
PLN00167256 aquaporin TIP5; Provisional 100.0
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 100.0
PLN00183274 putative aquaporin NIP7; Provisional 100.0
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 100.0
TIGR00861216 MIP MIP family channel proteins. processes. Some m 100.0
PLN00182283 putative aquaporin NIP4; Provisional 99.59
PLN00184 296 aquaporin NIP1; Provisional 99.58
PLN00026 298 aquaporin NIP; Provisional 99.58
PLN00183274 putative aquaporin NIP7; Provisional 99.58
cd00333228 MIP Major intrinsic protein (MIP) superfamily. Mem 99.57
KOG0223238 consensus Aquaporin (major intrinsic protein famil 99.49
TIGR00861216 MIP MIP family channel proteins. processes. Some m 99.48
PLN00166 250 aquaporin TIP2; Provisional 99.48
PLN00167 256 aquaporin TIP5; Provisional 99.48
PRK05420 231 aquaporin Z; Provisional 99.43
PTZ00016 294 aquaglyceroporin; Provisional 99.43
PLN00027 252 aquaporin TIP; Provisional 99.42
KOG0224 316 consensus Aquaporin (major intrinsic protein famil 99.36
COG0580 241 GlpF Glycerol uptake facilitator and related perme 99.32
PF00230227 MIP: Major intrinsic protein; InterPro: IPR000425 99.14
COG2116265 FocA Formate/nitrite family of transporters [Inorg 94.89
PRK11562268 nitrite transporter NirC; Provisional 92.45
PRK09713282 focB putative formate transporter; Provisional 82.62
PRK10805285 formate transporter; Provisional 80.5
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1e-52  Score=377.94  Aligned_cols=237  Identities=62%  Similarity=1.074  Sum_probs=208.8

Q ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC-CCCchhHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCC
Q 040755           37 PVLQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYG-SVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFP  115 (275)
Q Consensus        37 ~~~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~-~~~~~~~a~~~g~~v~~~i~~~g~iSG~h~NPavTl~~~l~g~~~  115 (275)
                      .+.+++|++++||+|||+|+++++++...+...+ ...+..++++||+++++.+++++++||||+|||||+++++.|+++
T Consensus        49 ~~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~  128 (296)
T PLN00184         49 VSVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFP  128 (296)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCC
Confidence            4567899999999999999999998876543322 345677899999999999999999999999999999999999999


Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhcCCc-------ccccccCCCCchhHHHHHHHHHHHHHHHhhhhcccCCCCCch
Q 040755          116 RKQVPIYIVAQLLGSVLASGSLYLIFDVKDE-------AFFGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSIGEL  188 (275)
Q Consensus       116 ~~~~~~yi~aQ~lGa~~g~~l~~~~~~~~~~-------~~~~~~p~~s~~~~~~~E~~~T~ilv~~i~~~~~~~~~~~~~  188 (275)
                      |.++++|+++|++|+++|+++++.+++....       ...++.|..+..++|+.|+++|++|+++++.+..+++..+..
T Consensus       129 ~~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~~~~~~~~~~t~p~~s~~~af~~E~i~TfvLv~~il~~~~~~~~~~~~  208 (296)
T PLN00184        129 LKQVPAYVISQVIGSTLAAATLRLLFGLDHDVCSGKHDVFIGSSPVGSDLQAFVMEFIVTFYLMFIISGVATDNRAIGEL  208 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcchhhccccccceeeccCcCCcHHHHHHHHHHHHHHHHHHHHheeccCcCCCcc
Confidence            9999999999999999999999998853211       122345666889999999999999999999986666655567


Q ss_pred             hHHHHHHHHHHHHHHhcCCCCcccchhhhHHHHHhHhccCceeeeeecchHHHHHHHHHHHHHhcCCCCccccccCcccc
Q 040755          189 AGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFL  268 (275)
Q Consensus       189 ~~~~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~l~~~~~~~~~~~~~~~~~~~~~  268 (275)
                      .++.||+++.+.+++.+++||++|||||||||+++.+.|+++||||++|++|+++|+++|+++...+++.++..+++++.
T Consensus       209 ~~l~IG~~v~~~~~~~g~~TG~smNPAR~~GPal~~~~~~~~WVy~vgPilGa~laal~y~~l~~~~~~~~~~~~~~~~~  288 (296)
T PLN00184        209 AGLAIGSTVLLNVLIAAPVSSASMNPGRSLGPAMVYGCYKGIWIYIVAPTLGAIAGAWVYNTVRYTDKPLREITKSGSFL  288 (296)
T ss_pred             hHHHHHHHHHHHHHHhcccCccccCchhhHHHHHHhhcccccchHHhHHHHHHHHHHHHHHHHhcCCCcchhhccchHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999899999999999988


Q ss_pred             ccCCC
Q 040755          269 KSFSR  273 (275)
Q Consensus       269 ~~~~~  273 (275)
                      |+.+.
T Consensus       289 ~~~~~  293 (296)
T PLN00184        289 KTVRI  293 (296)
T ss_pred             hhhcc
Confidence            87764

>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00182 putative aquaporin NIP4; Provisional Back     alignment and domain information
>PLN00184 aquaporin NIP1; Provisional Back     alignment and domain information
>PLN00026 aquaporin NIP; Provisional Back     alignment and domain information
>PLN00183 putative aquaporin NIP7; Provisional Back     alignment and domain information
>cd00333 MIP Major intrinsic protein (MIP) superfamily Back     alignment and domain information
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00861 MIP MIP family channel proteins Back     alignment and domain information
>PLN00166 aquaporin TIP2; Provisional Back     alignment and domain information
>PLN00167 aquaporin TIP5; Provisional Back     alignment and domain information
>PRK05420 aquaporin Z; Provisional Back     alignment and domain information
>PTZ00016 aquaglyceroporin; Provisional Back     alignment and domain information
>PLN00027 aquaporin TIP; Provisional Back     alignment and domain information
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ] Back     alignment and domain information
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11562 nitrite transporter NirC; Provisional Back     alignment and domain information
>PRK09713 focB putative formate transporter; Provisional Back     alignment and domain information
>PRK10805 formate transporter; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
3nk5_A234 Crystal Structure Of Aqpz Mutant F43w Length = 234 5e-28
3nkc_A234 Crystal Structure Of Aqpz F43w,H174g,T183f Length = 2e-27
2evu_A246 Crystal Structure Of Aquaporin Aqpm At 2.3a Resolut 2e-27
3iyz_A340 Structure Of Aquaporin-4 S180d Mutant At 10.0 A Res 3e-27
2zz9_A301 Structure Of Aquaporin-4 S180d Mutant At 2.8 A Reso 3e-27
2d57_A301 Double Layered 2d Crystal Structure Of Aquaporin-4 2e-26
1rc2_B231 2.5 Angstrom Resolution X-Ray Structure Of Aquapori 3e-26
3nka_A234 Crystal Structure Of Aqpz H174g,T183f Length = 234 4e-26
2b6o_A263 Electron Crystallographic Structure Of Lens Aquapor 5e-26
1ymg_A263 The Channel Architecture Of Aquaporin O At 2.2 Angs 6e-26
1sor_A235 Aquaporin-0 Membrane Junctions Reveal The Structure 2e-25
2o9d_A234 Crystal Structure Of Aqpz Mutant T183c. Length = 23 4e-25
2o9e_A234 Crystal Structure Of Aqpz Mutant T183c Complexed Wi 6e-25
2o9f_A234 Crystal Structure Of Aqpz Mutant L170c Length = 234 7e-25
3m9i_A220 Electron Crystallographic Structure Of Lens Aquapor 2e-24
3gd8_A223 Crystal Structure Of Human Aquaporin 4 At 1.8 And I 2e-24
3ne2_A246 Archaeoglobus Fulgidus Aquaporin Length = 246 2e-23
1fx8_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-23
3llq_A256 Aquaporin Structure From Plant Pathogen Agrobacteri 2e-22
1ldf_A281 Crystal Structure Of The E. Coli Glycerol Facilitat 5e-22
3d9s_A266 Human Aquaporin 5 (Aqp5) - High Resolution X-Ray St 5e-21
1j4n_A271 Crystal Structure Of The Aqp1 Water Channel Length 8e-20
1fqy_A269 Structure Of Aquaporin-1 At 3.8 A Resolution By Ele 3e-19
2b5f_A303 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-16
3cn5_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 1e-16
3cll_A300 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-16
3cn6_A304 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-16
1z98_A281 Crystal Structure Of The Spinach Aquaporin Sopip2;1 2e-16
3c02_A258 X-Ray Structure Of The Aquaglyceroporin From Plasmo 4e-11
2w1p_A279 1.4 Angstrom Crystal Structure Of P.Pastoris Aquapo 2e-08
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w Length = 234 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/206 (37%), Positives = 118/206 (57%), Gaps = 19/206 (9%)
Query: 40  QLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGS--VTFPGICVVWGLIVMVMIYSVGHISG 97
            + +K  AE  GT++L+F GCGS  +   + +  + F G+ + WGL V+ M ++VGHISG
Sbjct: 3   HMFRKLAAECFGTFWLVFGGCGSAVLAAGFPALGIGFAGVALAWGLTVLTMAFAVGHISG 62
Query: 98  AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLI------FDVKDEAF--- 148
            HFNPAVTI       FP K+V  Y++AQ++G ++A+  LYLI      FD     F   
Sbjct: 63  GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122
Query: 149 -FGTIPVG--TNVQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
            +G    G  + + + V+E+++S   + VI G ATD  +    A IAIG+ + L  L++ 
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLALTLIHLISI 181
Query: 206 PVSGASMNPARSLGPAIVMHQYKGLW 231
           PV+  S+NPARS   AI    ++G W
Sbjct: 182 PVTNTSVNPARSTAVAI----FQGGW 203
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f Length = 234 Back     alignment and structure
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution Length = 246 Back     alignment and structure
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution From Electron Micrograph Length = 340 Back     alignment and structure
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4 (Aqp4m23) At 3.2 A Resolution By Electron Crystallography Length = 301 Back     alignment and structure
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z Length = 231 Back     alignment and structure
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f Length = 234 Back     alignment and structure
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore State Length = 263 Back     alignment and structure
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom Resolution Length = 263 Back     alignment and structure
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A Closed Water Pore Length = 235 Back     alignment and structure
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c. Length = 234 Back     alignment and structure
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With Mercury Length = 234 Back     alignment and structure
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c Length = 234 Back     alignment and structure
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0 (Aqp Mip) In E. Coli Polar Lipids Length = 220 Back     alignment and structure
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its Mechanism Of Conductance Length = 223 Back     alignment and structure
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin Length = 246 Back     alignment and structure
>pdb|1FX8|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol Length = 281 Back     alignment and structure
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium Tumerfaciens Length = 256 Back     alignment and structure
>pdb|1LDF|A Chain A, Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48f, F200t Length = 281 Back     alignment and structure
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure Length = 266 Back     alignment and structure
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel Length = 271 Back     alignment and structure
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron Crystallography Length = 269 Back     alignment and structure
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An Open Conformation To 3.9 Resolution Length = 303 Back     alignment and structure
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e, S274e Mutant Length = 304 Back     alignment and structure
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e Mutant Length = 300 Back     alignment and structure
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e Mutant Length = 304 Back     alignment and structure
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A Closed Conformation Length = 281 Back     alignment and structure
>pdb|3C02|A Chain A, X-Ray Structure Of The Aquaglyceroporin From Plasmodium Falciparum Length = 258 Back     alignment and structure
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin, Aqy1, In A Closed Conformation At Ph 8.0 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
2o9g_A234 Aquaporin Z; integral membrane protein, structural 3e-86
2o9g_A234 Aquaporin Z; integral membrane protein, structural 1e-07
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 6e-86
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 8e-86
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 1e-85
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 7e-07
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-85
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 2e-06
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 3e-84
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 7e-06
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 5e-81
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 8e-05
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 7e-79
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 6e-06
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 1e-73
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 3e-05
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 3e-72
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 9e-06
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 1e-70
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 9e-07
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 8e-67
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-65
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 1e-04
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
 Score =  256 bits (656), Expect = 3e-86
 Identities = 81/228 (35%), Positives = 123/228 (53%), Gaps = 17/228 (7%)

Query: 40  QLLQKAIAEVIGTYFLIFTGCGSVAVNKIY--GSVTFPGICVVWGLIVMVMIYSVGHISG 97
            + +K  AE  GT++L+F G GS  +   +    + F G+ + +GL V+ M ++VGHISG
Sbjct: 3   HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISG 62

Query: 98  AHFNPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIPVGTN 157
            HFNPAVTI       FP K+V  Y++AQ++G ++A+  LYLI   K           +N
Sbjct: 63  GHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASN 122

Query: 158 ------------VQSFVLEIIISFLLMFVISGVATDNRSIGELAGIAIGMTILLNVLVAG 205
                       + + V+E+++S   + VI G ATD  +    A IAIG+   L  L++ 
Sbjct: 123 GYGEHSPGGYSMLSALVVELVLSAGFLLVIHG-ATDKFAPAGFAPIAIGLACTLIHLISI 181

Query: 206 PVSGASMNPARSLGPAIVMHQY--KGLWVYIAGPIIGTILGGLAYNMI 251
           PV+  S+NPARS   AI    +  + LW +   PI+G I+GGL Y  +
Sbjct: 182 PVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTL 229
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Length = 234 Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Length = 256 Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Length = 340 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Length = 263 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Length = 301 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Length = 246 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Length = 258 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Length = 223 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Length = 279 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Length = 271 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Length = 266 Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Length = 281 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Length = 304 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 100.0
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 100.0
2zz9_A301 Aquaporin-4; water transport, water channel, two-d 100.0
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 100.0
3llq_A256 Aquaporin Z 2; aquaporin tetramer, membrane protei 100.0
1j4n_A271 Aquaporin 1; membrane protein, channel protein, tr 100.0
2b6o_A263 Aquaporin-0, lens fiber major intrinsic protein; a 100.0
2o9g_A234 Aquaporin Z; integral membrane protein, structural 100.0
3cn5_A304 Aquaporin; membrane protein, transmembrane, transp 100.0
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 100.0
1ldf_A281 Glycerol uptake facilitator protein; glycerol-cond 100.0
3c02_A258 Aquaglyceroporin; membrane protein, glycerol, wate 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 100.0
2f2b_A246 Aquaporin AQPM; protein, integral membrane protein 99.58
2b6o_A 263 Aquaporin-0, lens fiber major intrinsic protein; a 99.5
3llq_A 256 Aquaporin Z 2; aquaporin tetramer, membrane protei 99.4
2zz9_A 301 Aquaporin-4; water transport, water channel, two-d 99.38
2o9g_A234 Aquaporin Z; integral membrane protein, structural 99.34
3gd8_A223 Aquaporin-4; proton exclusion, structural genomics 99.33
1j4n_A 271 Aquaporin 1; membrane protein, channel protein, tr 99.33
2w2e_A279 AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating 99.32
1ldf_A 281 Glycerol uptake facilitator protein; glycerol-cond 99.31
3c02_A 258 Aquaglyceroporin; membrane protein, glycerol, wate 99.31
3cn5_A 304 Aquaporin; membrane protein, transmembrane, transp 99.3
3d9s_A266 Aquaporin-5, AQP-5; aquaglyceroporin, membrane pro 99.3
3iyz_A340 Aquaporin-4; water transport, water channel, two-d 99.28
3kcu_A285 Probable formate transporter 1; TCDB ID 2.A.44.1.1 88.46
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
Probab=100.00  E-value=3.6e-51  Score=365.26  Aligned_cols=225  Identities=22%  Similarity=0.381  Sum_probs=192.2

Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHhhhhhc-ccc------cC-CCCchhHHHHHHHHHHHHHHHhcCCCccccchHHHH
Q 040755           35 PSPVLQLLQKAIAEVIGTYFLIFTGCGSVAV-NKI------YG-SVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTI  106 (275)
Q Consensus        35 ~~~~~~~~~~~~~EfigTf~lv~~~~~~~~~-~~~------~~-~~~~~~~a~~~g~~v~~~i~~~g~iSG~h~NPavTl  106 (275)
                      +...++.+|++++||+|||+|+++++++... +..      .+ ..+++.++++||+++++.+++++++||||+|||||+
T Consensus        38 ~~~~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTl  117 (279)
T 2w2e_A           38 SDSVRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTL  117 (279)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHH
Confidence            3444678899999999999999999886422 211      11 234667899999999999999999999999999999


Q ss_pred             HHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhhcCCcccccccC--CCCchhHHHHHHHHHHHHHHHhhhhcccCCC
Q 040755          107 TFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFDVKDEAFFGTIP--VGTNVQSFVLEIIISFLLMFVISGVATDNRS  184 (275)
Q Consensus       107 ~~~l~g~~~~~~~~~yi~aQ~lGa~~g~~l~~~~~~~~~~~~~~~~p--~~s~~~~~~~E~~~T~ilv~~i~~~~~~~~~  184 (275)
                      ++++.|+++|.+++.|+++|++|+++|+++++.++++..  ...+.|  ..+..++++.|+++|++|+++++.+.++++.
T Consensus       118 a~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~--~~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~  195 (279)
T 2w2e_A          118 ALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEI--AFANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR  195 (279)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSC--CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccc--eeeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999986543  223444  3478899999999999999999998766655


Q ss_pred             CCchhHHHHHHHHHHHHHHhcCCCCcccchhhhHHHHHhHhcc-CceeeeeecchHHHHHHHHHHHHHhcCCCCcccc
Q 040755          185 IGELAGIAIGMTILLNVLVAGPVSGASMNPARSLGPAIVMHQY-KGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREI  261 (275)
Q Consensus       185 ~~~~~~~~ig~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~-~~~wvy~v~p~~Ga~~a~~l~~~~~~~~~~~~~~  261 (275)
                      ...+.|+.||+++.+.+++.++.||+++|||||||||++.+.| .++||||++|++|+++|+++|+++...+++..++
T Consensus       196 ~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~~~~p  273 (279)
T 2w2e_A          196 ATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTTNP  273 (279)
T ss_dssp             TGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCSCC
T ss_pred             CcCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCCcCCC
Confidence            5568999999999999999999999999999999999999765 5899999999999999999999998776654433
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A* Back     alignment and structure
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A* Back     alignment and structure
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str} Back     alignment and structure
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A Back     alignment and structure
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A* Back     alignment and structure
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens} Back     alignment and structure
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A Back     alignment and structure
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A* Back     alignment and structure
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A* Back     alignment and structure
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum} Back     alignment and structure
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A Back     alignment and structure
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens} Back     alignment and structure
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus} Back     alignment and structure
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d1ymga1234 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [ 5e-46
d1j4na_249 f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId 5e-45
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 3e-41
d1fx8a_254 f.19.1.1 (A:) Glycerol uptake facilitator protein 1e-05
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 7e-40
d1rc2a_231 f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId 4e-05
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Length = 234 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  152 bits (384), Expect = 5e-46
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 7/233 (3%)

Query: 41  LLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHF 100
             +   AE   + F +F G G+       G +    + + +GL +  ++ +VGHISGAH 
Sbjct: 4   FWRAICAEFFASLFYVFFGLGASLRWAP-GPLHVLQVALAFGLALATLVQAVGHISGAHV 62

Query: 101 NPAVTITFAIFRHFPRKQVPIYIVAQLLGSVLASGSLYLIFD---VKDEAFFGTIPVGTN 157
           NPAVT  F +       +   Y+VAQLLG+V  +  LY +       + A     P  + 
Sbjct: 63  NPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSV 122

Query: 158 VQSFVLEIIISFLLMFVISGVATDNR-SIGELAGIAIGMTILLNVLVAGPVSGASMNPAR 216
            Q+ ++EI ++   +  I     + R        +A+G ++ L  L     +GA MNPAR
Sbjct: 123 GQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVGFSLTLGHLFGMYYTGAGMNPAR 182

Query: 217 SLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKPLREITKSGSFLK 269
           S  PAI+   +   WVY  GP+IG  LG L Y+ + F    L+ +++  S LK
Sbjct: 183 SFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPR--LKSVSERLSILK 233
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Length = 249 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Length = 254 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Length = 231 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1ymga1234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 100.0
d1j4na_249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 100.0
d1ymga1 234 Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} 99.42
d1fx8a_254 Glycerol uptake facilitator protein GlpF {Escheric 99.36
d1rc2a_231 Aquaporin Z {Escherichia coli [TaxId: 562]} 99.28
d1j4na_ 249 Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} 99.24
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Aquaporin-like
superfamily: Aquaporin-like
family: Aquaporin-like
domain: Aquaporin-0
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-48  Score=339.24  Aligned_cols=218  Identities=30%  Similarity=0.477  Sum_probs=189.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCCCchhHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCCCCc
Q 040755           39 LQLLQKAIAEVIGTYFLIFTGCGSVAVNKIYGSVTFPGICVVWGLIVMVMIYSVGHISGAHFNPAVTITFAIFRHFPRKQ  118 (275)
Q Consensus        39 ~~~~~~~~~EfigTf~lv~~~~~~~~~~~~~~~~~~~~~a~~~g~~v~~~i~~~g~iSG~h~NPavTl~~~l~g~~~~~~  118 (275)
                      .+++|++++||+|||+++++++++...+... ..+...+++++|++++..+++++++||||+|||||++.++.|+++|++
T Consensus         2 ~s~~r~~laEf~GT~~lvf~g~gs~~~~~~~-~~~~~~ial~~G~~v~~~i~~~g~iSGaH~NPAVTla~~~~g~i~~~~   80 (234)
T d1ymga1           2 ASFWRAICAEFFASLFYVFFGLGASLRWAPG-PLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLR   80 (234)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHCSCC-C-HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-CcchHHHHHHHHHHHHHHHHHHhccccCccCchhhHHHHhccCCChhh
Confidence            4689999999999999999999987644333 344567899999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhcCCccc---ccccCCCCchhHHHHHHHHHHHHHHHhhhhcccCCCC-CchhHHHHH
Q 040755          119 VPIYIVAQLLGSVLASGSLYLIFDVKDEAF---FGTIPVGTNVQSFVLEIIISFLLMFVISGVATDNRSI-GELAGIAIG  194 (275)
Q Consensus       119 ~~~yi~aQ~lGa~~g~~l~~~~~~~~~~~~---~~~~p~~s~~~~~~~E~~~T~ilv~~i~~~~~~~~~~-~~~~~~~ig  194 (275)
                      ++.|+++|++|+++|+++++.++++.....   ..+.|..+..++++.|++.|++|+++++.+.++++.. ....++.+|
T Consensus        81 ~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~t~~lv~~i~~~~~~~~~~~~~~~~l~ig  160 (234)
T d1ymga1          81 AICYMVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFATYDERRNGRLGSVALAVG  160 (234)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCTTTCTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCSCCCCHHHHHH
T ss_pred             eeeeeehHHHHHHHHHHHHHHHcCccccccccccccCccchhhHHHHHHHHHHHHHHHhheeeecCCccCcCcceeEeeh
Confidence            999999999999999999999986543322   2244566889999999999999999999986544332 346789999


Q ss_pred             HHHHHHHHHhcCCCCcccchhhhHHHHHhHhccCceeeeeecchHHHHHHHHHHHHHhcCCCC
Q 040755          195 MTILLNVLVAGPVSGASMNPARSLGPAIVMHQYKGLWVYIAGPIIGTILGGLAYNMIRFTDKP  257 (275)
Q Consensus       195 ~~v~~~~~~~~~~tG~~lNPAr~lg~~l~~~~~~~~wvy~v~p~~Ga~~a~~l~~~~~~~~~~  257 (275)
                      +.+.+.....+++||+++||||||||+++.++|+++|+||++|++|+++|+++|++++.++.+
T Consensus       161 ~~v~~~~~~~~~~tG~~~NPAR~~gp~v~~~~~~~~wiy~vgP~~Ga~laa~ly~~~~~~~~~  223 (234)
T d1ymga1         161 FSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK  223 (234)
T ss_dssp             HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCCC
T ss_pred             HHHHHHHHHhcccccccccchhhhhHHHhccCccCeeeeehHHHHHHHHHHHHHHHHHcCCCc
Confidence            999999999999999999999999999999999999999999999999999999998866543
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1fx8a_ f.19.1.1 (A:) Glycerol uptake facilitator protein GlpF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure