Citrus Sinensis ID: 040758
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | 2.2.26 [Sep-21-2011] | |||||||
| Q6NLC1 | 706 | ABC transporter D family | yes | no | 0.815 | 0.910 | 0.683 | 0.0 | |
| Q55774 | 661 | Uncharacterized ABC trans | N/A | no | 0.663 | 0.791 | 0.380 | 1e-104 | |
| Q57335 | 592 | Uncharacterized ABC trans | yes | no | 0.664 | 0.885 | 0.275 | 4e-66 | |
| P45221 | 589 | Uncharacterized ABC trans | no | no | 0.670 | 0.896 | 0.279 | 2e-63 | |
| Q50614 | 639 | Uncharacterized ABC trans | yes | no | 0.676 | 0.834 | 0.289 | 9e-56 | |
| O89016 | 606 | ATP-binding cassette sub- | yes | no | 0.722 | 0.938 | 0.279 | 9e-52 | |
| O14678 | 606 | ATP-binding cassette sub- | yes | no | 0.649 | 0.844 | 0.273 | 1e-48 | |
| Q94FB9 | 1337 | ABC transporter D family | no | no | 0.694 | 0.409 | 0.285 | 4e-46 | |
| P28288 | 659 | ATP-binding cassette sub- | no | no | 0.746 | 0.892 | 0.243 | 2e-43 | |
| P31826 | 561 | Inner membrane ABC transp | N/A | no | 0.507 | 0.713 | 0.266 | 1e-42 |
| >sp|Q6NLC1|AB2D_ARATH ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/680 (68%), Positives = 542/680 (79%), Gaps = 37/680 (5%)
Query: 107 PAPEPEPDNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFA 166
P P PD K EL TL+++F+KVA+PYWFS+DK QARL+LAAVFALT A
Sbjct: 49 PQPSVRPD-----------KASELKTLWKKFYKVASPYWFSEDKDQARLRLAAVFALTLA 97
Query: 167 TTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWR 226
TTGISVGFNFLGRDFYN+LA+KDQEQF KQL YYL AFAGGIPFFVLRDY +ETL+LRWR
Sbjct: 98 TTGISVGFNFLGRDFYNSLANKDQEQFTKQLFYYLCAFAGGIPFFVLRDYTKETLSLRWR 157
Query: 227 SWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLIS 286
SWMTKYY++RYLKDQTFYKIQSQSIIDNPDQR+VDDLSSFTGTALSFSLTL NA +DLIS
Sbjct: 158 SWMTKYYLQRYLKDQTFYKIQSQSIIDNPDQRLVDDLSSFTGTALSFSLTLVNATIDLIS 217
Query: 287 FSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAE 346
FSNIL+ IYPPLF+VLL+YS GGTAIS++LGKGLV LNFLQEKKEADFRY LVRVRENAE
Sbjct: 218 FSNILFTIYPPLFLVLLLYSFGGTAISVFLGKGLVNLNFLQEKKEADFRYSLVRVRENAE 277
Query: 347 SIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYF 406
SIAFY GE NEMQLLLQRFRSAF+NLT LLI+SRNLEFFT GYRYLIQILP AVVAPMYF
Sbjct: 278 SIAFYGGEQNEMQLLLQRFRSAFDNLTELLIASRNLEFFTDGYRYLIQILPVAVVAPMYF 337
Query: 407 SGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE 466
SGKIEFGVINQSVSAFNHILGDFSL+VYQFQAIS+FSAVIDRLGEFDD+LD++ ++ S+
Sbjct: 338 SGKIEFGVINQSVSAFNHILGDFSLVVYQFQAISSFSAVIDRLGEFDDLLDNNIFRDPSD 397
Query: 467 PLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526
+++I LTY S + NG++ + +QK L+IE+LTL+TPT+ TLV +LS + +K
Sbjct: 398 TVDEIELTYQSEMNSSLLDTNGSIKSQPNQKRLEIEELTLQTPTNGTTLVHNLSADVYDK 457
Query: 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586
+HLL+MGPSGSGKTSLLRAMAGLW G+GKITFY+ E D D+ E
Sbjct: 458 DHLLIMGPSGSGKTSLLRAMAGLWRSGKGKITFYLD--PEVDFTQEKSDTQE-------- 507
Query: 587 ELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA-GLVPFLTS 644
N RG V FLPQRPYMVLGSLRQQL+YPTW+ V+ + + G P L
Sbjct: 508 ------NSGKRGDVLFLPQRPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLLIR 561
Query: 645 AQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR 704
E KP+TDDL++ LE V LG+I R LD+ +EWSSVLSLGEQQRLAFAR
Sbjct: 562 EDGNE-------KPTTDDLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFAR 614
Query: 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764
LLLS+P++ LLDESTSALDEANEA LY+QI++AGITYIS+GHRRTL FH ++L+IST D
Sbjct: 615 LLLSQPKLALLDESTSALDEANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTAD 674
Query: 765 QNSSQSNWKLEFID-QESLY 783
S++ NW++E +D Q+SLY
Sbjct: 675 PKSNERNWRIEDVDAQDSLY 694
|
Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: - |
| >sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding protein sll0182 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll0182 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust.
Identities = 233/613 (38%), Positives = 335/613 (54%), Gaps = 90/613 (14%)
Query: 169 GISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSW 228
G++V +F+ R AL KD E F + L Y IP V Y R+ L + WR W
Sbjct: 135 GLNVILSFVFRFIDTALNGKDAEVFWQFLWIYGIVIVVAIPIIVAYRYLRQKLGVLWRQW 194
Query: 229 MTKYYMERYLKDQTFYKIQSQS---IIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285
+T++++ RY K +++Y + S S +IDNPDQRI D+ SFTG L F L + ++ + LI
Sbjct: 195 LTEHFLGRYFKGRSYYHLDSNSAYTLIDNPDQRITQDIQSFTGVTLDFLLDILDSILTLI 254
Query: 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENA 345
SF+ ILY I L L+ Y++ GT ++I +G L+ +N+ Q + EA+FRYGLVRVR+NA
Sbjct: 255 SFTAILYTISQTLMWGLIGYAVFGTVVAIAIGTRLIRINYEQLRLEANFRYGLVRVRDNA 314
Query: 346 ESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMY 405
ESIAFY GE E + + R A N L+I + F GY Y +++P ++AP+Y
Sbjct: 315 ESIAFYRGEGLERKQVTDRLLGAIRNFNLLIIWQALISLFQLGYNYFTRLIPYIIIAPLY 374
Query: 406 FSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465
+G ++FG I Q+ AF +L SL+ Q Q I+ F+A I+RLGEF + L+ S++ L
Sbjct: 375 LAGDLDFGAIAQASLAFGMVLSALSLVTNQIQNITEFAASINRLGEFYESLNGPSNE-LE 433
Query: 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525
P E + + T++ ++ +E++TL P S LVRDLSL +
Sbjct: 434 RP-ESTGFDHNVI----TTRIGATVA---------LENVTLSPPNSSRILVRDLSLAVAP 479
Query: 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMN 585
HLL+MGPSGSGK+SLLRA+AGLW G+G I +R E
Sbjct: 480 GNHLLIMGPSGSGKSSLLRAIAGLWDSGQGTI-----ERPEL------------------ 516
Query: 586 GELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645
+ FLPQRPYM+LG+LR+QLIYP SA
Sbjct: 517 -----------ADLLFLPQRPYMILGTLREQLIYP-----------------------SA 542
Query: 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARL 705
Q + + D L++ L V L + R LD+ WSSVLSLGEQQR+A AR+
Sbjct: 543 QSIAD---------DDFLLETLNKVNLPDLAERFGGLDSLENWSSVLSLGEQQRIALARV 593
Query: 706 LLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQ 765
+++P+ +LDE+TSALD NEA LY + G T+ISVGHR TL +FH++ L +
Sbjct: 594 FINQPRYAILDEATSALDVNNEAELYHALTDLGTTFISVGHRPTLRNFHRQCLEV----- 648
Query: 766 NSSQSNWKLEFID 778
++ W++ I+
Sbjct: 649 -QAEGRWQISPIN 660
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q57335|Y036_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_0036 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0036 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 177/642 (27%), Positives = 306/642 (47%), Gaps = 118/642 (18%)
Query: 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFA 194
++FW A Y ++ L + A+T + IS+ + ++ Y +L + ++ F
Sbjct: 40 KQFWMFAGGYLSPKRSIKPILFFLLIVAMTLLSVRISLVNSEWYKNMYTSLQEFNEHVFW 99
Query: 195 KQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-ID 253
+Q+ + A + ++ Y + + W W+ + + +++ + +YK Q S +D
Sbjct: 100 QQMGLFCVIAASSVSAALVSYYLEQRFVINWIEWLNEQLVNKWMAHRAYYKTQYLSENLD 159
Query: 254 NPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFV---------VLLV 304
NPDQRI D+ S+ T LS S + +A +IS++ +L+G+ P+ V V LV
Sbjct: 160 NPDQRIQQDVQSYVKTTLSLSTGVIDAVTSMISYTILLWGLAGPMIVLGVEIPHMMVFLV 219
Query: 305 --YSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362
Y I T I+ +LG+ L++LNF+ E+ A++RY L+R++E AESIAFYAGE E L
Sbjct: 220 FGYVIFTTLIAFWLGRPLISLNFINERLNANYRYSLIRIKEYAESIAFYAGEKVEKNQLY 279
Query: 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQ----ILPAAVVAPMYFSGKIEFGVINQS 418
Q+F + N+ +I R L+F SG+ ++ + P + YF +I+ G + Q+
Sbjct: 280 QQFNAVIHNM--WVIIFRTLKF--SGFNLVVSQISVVFPLLIQVGRYFEKQIKLGDLMQT 335
Query: 419 VSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSV 478
+ F + + S + +++ A +DRL F ++ +++K+ ++ +
Sbjct: 336 LQVFGQLHANLSFFRSTYDNFASYKATLDRLTGFCYAIEKANNKSQTQ-----------I 384
Query: 479 KSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSG 538
+ PT + ++L+++ P TL++ L++ + + LL+ G SG+G
Sbjct: 385 HNHPTD--------------VIFKNLSIQNPLGH-TLIKHLNITLPQGTSLLIQGKSGAG 429
Query: 539 KTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG 598
KT+LLR +AGLWS G+I N +
Sbjct: 430 KTTLLRTIAGLWSYAEGEI-----------------------------------NCPTHN 454
Query: 599 VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658
FL Q+PY+ G+L L YP +
Sbjct: 455 QLFLSQKPYVPQGNLMSALAYP--------------------------------NNADNI 482
Query: 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDES 718
S ++ L V+LG++ + L+ +W+ +LSLGEQQRLAFARL+L KP + LDE+
Sbjct: 483 SHTQAVEILNKVQLGHLAEQ---LEKEQDWTRILSLGEQQRLAFARLILHKPAVAFLDEA 539
Query: 719 TSALDEANEAHLYE--QIEAAGITYISVGHRRTLYDFHKRVL 758
T+++DE E +Y+ Q E T ISVGHR TL H++ L
Sbjct: 540 TASMDEGLEFSMYQLLQQELPQTTIISVGHRSTLKTLHQQQL 581
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) |
| >sp|P45221|Y1467_HAEIN Uncharacterized ABC transporter ATP-binding protein HI_1467 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1467 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 244 bits (623), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 181/647 (27%), Positives = 298/647 (46%), Gaps = 119/647 (18%)
Query: 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQE 191
T ++FW + +P S DK + ++L + + F + V F+ L FYN L QE
Sbjct: 36 TFGKKFWCIVSP---SMDK-KTSIKLILMLLVLFIMILLEVRFSVLNSFFYNGLYSSMQE 91
Query: 192 QFAKQLLYYLGAFAGGIPFFVLRDYA----RETLALRWRSWMTKYYMERYLKDQTFYKIQ 247
++ ++ A + V+ A ++ +RW ++R+L + +Y+++
Sbjct: 92 LNIEKFWFFAKLNALLVVAQVIHAIADYFFQQVFEIRWLESFNATLVKRWLNKKKYYRLK 151
Query: 248 -SQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLF------- 299
+ + DN DQRI D F + + + N+ + I F+ IL+ + L
Sbjct: 152 YERDLPDNIDQRIEQDAREFITSTVQIVRGVINSVLTTIEFTIILWSLSGVLTLFGFNIE 211
Query: 300 --VVLLVYS--IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGED 355
VV +Y+ I T +S+++G+ L+ LNF +EK D+RY L+RVR+NAESIAFY GE
Sbjct: 212 KGVVFFIYAFIIFATLMSVWIGRPLIKLNFTKEKLNGDYRYSLIRVRDNAESIAFYNGEP 271
Query: 356 NEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVI 415
E L +FR N +++ L F SG + ++LP + AP +FSG+I+ G +
Sbjct: 272 KEQTFLQHQFRQIIHNRWSIVLKMLGLNSFNSGVTRVAKLLPLMLQAPRFFSGQIKLGDM 331
Query: 416 NQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTY 475
+Q+V AFN ++ S ++ + + A ++RL F +D +N+ P C
Sbjct: 332 HQTVQAFNRLMTALSFFRLFYEQFTLYQARLNRLYGFITKMDELDKQNVHHPFH--CSHR 389
Query: 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPS 535
++K+F G + L+ D LL+ G S
Sbjct: 390 VALKNFGIKDEQGHVLLNNLNINLENGD------------------------ALLIQGAS 425
Query: 536 GSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595
G+GKTSLL+A+AG++ +++ + G L
Sbjct: 426 GTGKTSLLKAIAGIYP----------------------FETIGIAEHPCMGSL------- 456
Query: 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655
FLPQRPYM G+LR+ + YP +
Sbjct: 457 -----FLPQRPYMPQGTLREAICYP----------------------------------N 477
Query: 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLL 715
PS +L + ++D LG +++L+ +W ++LS GE QR+AF R+LL+KP +V L
Sbjct: 478 INPSHAELEQTMKDCALG---KYIHALNVKNDWQAILSPGELQRVAFIRILLTKPDVVFL 534
Query: 716 DESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760
DE+TSALDE E LY+ I+ + +SVGHR TL FH + L++
Sbjct: 535 DETTSALDETTENLLYQTIKERLPEMIILSVGHRSTLQQFHNKQLKL 581
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) |
| >sp|Q50614|Y1819_MYCTU Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867 OS=Mycobacterium tuberculosis GN=Rv1819c PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 193/666 (28%), Positives = 289/666 (43%), Gaps = 133/666 (19%)
Query: 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNAL-------AD 187
R+FW++ Y+ + V+ L L + ++V F++ G D Y AL A
Sbjct: 49 RQFWRITRAYFVGPNSVRVWLMLGVLLLSVVLAVRLNVLFSYQGNDMYTALQKAFEGIAS 108
Query: 188 KD---QEQFAKQLLYYLGAFAGGIPFFVLRD----YARETLALRWRSWMTKYYMERYLKD 240
D + + +G F+ V R Y + + WR W+T + + +L
Sbjct: 109 GDGTVKRSGVRGFWMSIGVFSVMAVLHVTRVMADIYLTQRFIIAWRVWLTHHLTQDWLDG 168
Query: 241 QTFYK-IQSQSIIDNPDQRIVDDLSSFT------------GTALSFSLTLFNAAVDLISF 287
+ +Y+ + IDNPDQRI D+ FT GTA + + + +ISF
Sbjct: 169 RAYYRDLFIDETIDNPDQRIQQDVDIFTAGAGGTPNAPSNGTASTLLFGAVQSIISVISF 228
Query: 288 SNILY---------GIYPP--LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRY 336
+ IL+ G+ P +F +LVY T IS +G+ L+ L+F EK A FRY
Sbjct: 229 TAILWNLSGTLNIFGVSIPRAMFWTVLVYVFVATVISFIIGRPLIWLSFRNEKLNAAFRY 288
Query: 337 GLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQIL 396
LVR+R+ AE++ FY GE E L +RF +N R + S + I L
Sbjct: 289 ALVRLRDAAEAVGFYRGERVEGTQLQRRFTPVIDNYRRYVRRSIAFNGWNLSVSQTIVPL 348
Query: 397 PAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVL 456
P + AP F+G+I+FG + Q+ ++F +I S + A ++F A I RL D
Sbjct: 349 PWVIQAPRLFAGQIDFGDVGQTATSFGNIHDSLSFFRNNYDAFASFRAAIIRLHGLVD-- 406
Query: 457 DSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLV 516
++ K + P +V + P S ++S +L DIE ++TP L+
Sbjct: 407 --ANEKGRALP---------AVLTRP--------SDDESVELNDIE---VRTPAGD-RLI 443
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
L + ++ L++ G SG+GKT+LLR++A LW
Sbjct: 444 DPLDVRLDRGGSLVITGRSGAGKTTLLRSLAELWP------------------------- 478
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
+G L R N FL Q PY+ LG+LR + YP SA
Sbjct: 479 ------YASGTLHRPGGENE--TMFLSQLPYVPLGTLRDVVCYP-------------NSA 517
Query: 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
+P T L V + P + LD +W+ VLS GE
Sbjct: 518 AAIPDATLRDTLTKVA----------------------LAPLCDRLDEERDWAKVLSPGE 555
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGHRRTLYDFH 754
QQR+AFAR+LL+KP+ V LDESTSALD E LY+ + E ISV HR L H
Sbjct: 556 QQRVAFARILLTKPKAVFLDESTSALDTGLEFALYQLLRSELPDCIVISVSHRPALERLH 615
Query: 755 KRVLRI 760
+ L +
Sbjct: 616 ENQLEL 621
|
Mycobacterium tuberculosis (taxid: 1773) |
| >sp|O89016|ABCD4_MOUSE ATP-binding cassette sub-family D member 4 OS=Mus musculus GN=Abcd4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 206 bits (523), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 191/683 (27%), Positives = 291/683 (42%), Gaps = 114/683 (16%)
Query: 123 RDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFY 182
R R +L F R KV P W S Q L + +T + + +Y
Sbjct: 13 RPRLDLQLVQRFVRIQKVFFPSWSS----QNVLMFMTLLCVTLLEQLVIYQVGLIPSQYY 68
Query: 183 NALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQT 242
L +KD + F L + + L + WR +T++ Y + +
Sbjct: 69 GVLGNKDLDGFKALTLLAVTLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHHLYFRARV 128
Query: 243 FYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY---GIYPPL 298
+Y + + IDNPDQRI D+ F S + L + L ++ + G P
Sbjct: 129 YYTLNVLRDDIDNPDQRISQDVERFCRQLSSVTSKLIISPFTLTYYTYQCFQSTGWLGP- 187
Query: 299 FVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY-AG---- 353
V + Y I GT ++ L +VT QEK E DFR+ +++R NAE AFY AG
Sbjct: 188 -VSIFGYFIVGTMVNKTLMGPIVTKLVQQEKLEGDFRFKHMQIRVNAEPAAFYRAGLVEH 246
Query: 354 --EDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT--SGYRYLIQILPAAVVAPMYFSGK 409
D +Q LLQ R + SR L + + + YL IL V+A FSG
Sbjct: 247 MRTDRRLQRLLQTQRE---------LMSRELWLYIGINTFDYLGSILSYVVIAIPIFSGV 297
Query: 410 IEFG---------VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD-VLDSS 459
+G +++++ +++ F+ ++ +S + R+GE + +LD S
Sbjct: 298 --YGDLSPTELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGELQEALLDMS 355
Query: 460 SSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDL 519
E L + + K G + E S ++ +++ P+S L++DL
Sbjct: 356 RKSQDCEALGE--------SEWDLDKTPGCPTTEPSDTAFLLDRVSILAPSSDKPLIKDL 407
Query: 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579
SL I E + LL+ G +G+GKTSLLR + GLW
Sbjct: 408 SLKICEGQSLLITGNTGTGKTSLLRVLGGLW----------------------------- 438
Query: 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLV 639
+ M G + + GV FLPQ+P+ G+LR+Q+IYP +E+ P S +A +V
Sbjct: 439 --EGMKGSVQMLADFGPHGVLFLPQKPFFTDGTLREQVIYP--LKEIYPDSGSADDERIV 494
Query: 640 PFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD--TTYEWSSVLSLGEQ 697
F LE L ++ R LD + W VLS GE
Sbjct: 495 RF-------------------------LELAGLSSLVARTGGLDQQVDWNWYDVLSPGEM 529
Query: 698 QRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRV 757
QRL+FARL +P+ +LDE+TSAL E E+ LY + G+T+ISVGHR +L FH V
Sbjct: 530 QRLSFARLFYLQPKYAVLDEATSALTEEAESELYRIGQQLGMTFISVGHRPSLEKFHSWV 589
Query: 758 LRISTVDQNSSQSNWKLEFIDQE 780
LR+ +W+L I E
Sbjct: 590 LRL------HGGGSWELTRIKLE 606
|
Mus musculus (taxid: 10090) |
| >sp|O14678|ABCD4_HUMAN ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 163/596 (27%), Positives = 265/596 (44%), Gaps = 84/596 (14%)
Query: 181 FYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKD 240
+Y L +KD E F + + L + WR +T++ Y +
Sbjct: 67 YYGVLGNKDLEGFKTLTFLAVMLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHRLYFRG 126
Query: 241 QTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY---GIYP 296
+ +Y + + IDNPDQRI D+ F S + L + L+ ++ + G
Sbjct: 127 RAYYTLNVLRDDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTGWLG 186
Query: 297 PLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDN 356
P V + Y I GT ++ L +V QEK E DFR+ +++R NAE AFY
Sbjct: 187 P--VSIFGYFILGTVVNKTLMGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYRAGHV 244
Query: 357 EMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFG--- 413
E +R + + L+ L + + YL IL V+A FSG +G
Sbjct: 245 EHMRTDRRLQRLLQTQRELMSKELWLYIGINTFDYLGSILSYVVIAIPIFSGV--YGDLS 302
Query: 414 ------VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467
+++++ +++ F+ ++ +S + R+G+ + L S K S+
Sbjct: 303 PAELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSLK--SQD 360
Query: 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKE 527
E + + + + P G + E + +E +++ P+S L++DLSL I+E +
Sbjct: 361 CEILGESEWGLDTPP-----GWPAAEPADTAFLLERVSISAPSSDKPLIKDLSLKISEGQ 415
Query: 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE 587
LL+ G +G+GKTSLLR + GLW+ RG +
Sbjct: 416 SLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLT-------------------------- 449
Query: 588 LTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647
+ GV FLPQ+P+ G+LR+Q+IYP +EV P S +A
Sbjct: 450 -----DFGPHGVLFLPQKPFFTDGTLREQVIYP--LKEVYPDSGSADD------------ 490
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD--TTYEWSSVLSLGEQQRLAFARL 705
+ +++ LE L ++ R LD + W VLS GE QRL+FARL
Sbjct: 491 -------------ERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARL 537
Query: 706 LLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761
+P+ +LDE+TSAL E E+ LY + G+T+ISVGHR++L FH VL++
Sbjct: 538 FYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGHRQSLEKFHSLVLKLC 593
|
Homo sapiens (taxid: 9606) |
| >sp|Q94FB9|AB1D_ARATH ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 186 bits (473), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 187/654 (28%), Positives = 285/654 (43%), Gaps = 107/654 (16%)
Query: 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQL-LYYLGAFAGGIPFFVLR 214
QL AV L + T IS L + ++D+ F + + L L + A I LR
Sbjct: 762 QLLAVACLVVSRTLISDRIASLNGTTVKYVLEQDKAAFVRLIGLSVLQSGASSIIAPSLR 821
Query: 215 DYARETLALRWRSWMTKYYMERYLKDQTFYKI--QSQSIIDNPDQRIVDDLSSFTGTALS 272
+ + LAL WR +T++ + YL++ FYK+ S + ID DQR+ DL T
Sbjct: 822 -HLTQRLALGWRIRLTQHLLRNYLRNNAFYKVFHMSGNSID-ADQRLTRDLEKLTADLSG 879
Query: 273 FSLTLFNAAVDLISFS---NILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEK 329
+ +VD++ F+ +L G +L Y + G + L +++
Sbjct: 880 LLTGMVKPSVDILWFTWRMKLLTGQRG--VAILYTYMLLGLGFLRRVAPDFGDLAGEEQQ 937
Query: 330 KEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLL------------I 377
E FR+ R+ +AESIAF+ G E ++ ++FR+ ++ LL +
Sbjct: 938 LEGKFRFMHERLNTHAESIAFFGGGAREKAMVDKKFRALLDHSLMLLRKKWLYGILDDFV 997
Query: 378 SSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFG------VINQSVSAFNHILGDFSL 431
+ + T G L + A + G++ V++QS AF IL
Sbjct: 998 TKQLPNNVTWGLSLLYALEHKGDRALVSTQGELAHALRYLASVVSQSFMAFGDIL----- 1052
Query: 432 IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALS 491
+ S I+R+ E D+ LD+S S SE TS+ +
Sbjct: 1053 --ELHKKFLELSGGINRIFELDEFLDASQSGVTSEN--------------QTSRLD---- 1092
Query: 492 PEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551
SQ LL ++ + TP K + LS I + LLV GP+GSGKTS+ R + +W
Sbjct: 1093 ---SQDLLSFSEVDIITPAQK-LMASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWP 1148
Query: 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG 611
G++T +D E+ S N G+FF+PQRPY LG
Sbjct: 1149 TVCGRLT------------KPSLDIKELGSGN--------------GMFFVPQRPYTCLG 1182
Query: 612 SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST--DDLIKA-LE 668
+LR Q+IYP EE + A KL G S++ + D +K LE
Sbjct: 1183 TLRDQIIYPLSKEEAEK---------------RAAKLYTSGESSTEAGSILDSHLKTILE 1227
Query: 669 DVKLGYILPR-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727
+V+L Y+L R + D T W +LSLGEQQRL ARL +P+ +LDE T+A E
Sbjct: 1228 NVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVE 1287
Query: 728 AHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQES 781
LY G+T+I+ R L FH LR+ +D + NW+L I+Q +
Sbjct: 1288 EQLYRVARDMGVTFITSSQRPALIPFHSLELRL--ID---GEGNWELRSIEQTT 1336
|
Contributes to the transport of fatty acids and their derivatives (acyl CoAs) across the peroxisomal membrane. Provides acetate to the glyoxylate cycle in developing seedlings. Involved in pollen tube elongation, ovule fertilization, and seeds germination after imbibition (controls the switch between the opposing developmental programs of dormancy and germination), probably by promoting beta-oxidation of storage lipids during gluconeogenesis. Required for biosynthesis of jasmonic acid and conversion of indole butyric acid to indole acetic acid. Confers sensitivity to monofluoroacetic acid (FAc), a toxic acetate analog, and to 2,4-dichlorophenoxybutyric acid (2,4-DB) and indole-3-butyric acid (IBA), two precursors of auxin after beta-oxidation. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: 4 EC: 7 |
| >sp|P28288|ABCD3_HUMAN ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 175/720 (24%), Positives = 304/720 (42%), Gaps = 132/720 (18%)
Query: 99 ANSLNTTEPAPEPEPDNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLA 158
A L+ + P +N+ +G ++R + + K+ P F K L L
Sbjct: 32 ALGLHGKKSGKPPLQNNEKEGKKERAVVDKVFFSRLIQILKIMVPRTFC--KETGYLVLI 89
Query: 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRD--- 215
AV ++ + + N G + + + ++ F + LL ++ A +P L +
Sbjct: 90 AVMLVSRTYCDVWMIQN--GTLIESGIIGRSRKDFKRYLLNFIAA----MPLISLVNNFL 143
Query: 216 -YARETLALRWRSWMTKYYMERYLKDQTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSF 273
Y L L +R +TKY E YL+ T+YK+ + + I NPDQ + D+ F + +
Sbjct: 144 KYGLNELKLCFRVRLTKYLYEEYLQAFTYYKMGNLDNRIANPDQLLTQDVEKFCNSVVDL 203
Query: 274 SLTLFNAAVDLISFSNIL---YGIYPP--LFVVLLVYSIGGTAISIYLGKGLVTLNFLQE 328
L +D++ + L G P + L+V + T + +GK +T ++
Sbjct: 204 YSNLSKPFLDIVLYIFKLTSAIGAQGPASMMAYLVVSGLFLTRLRRPIGKMTIT----EQ 259
Query: 329 KKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388
K E ++RY R+ N+E IAFY G E Q + FR E+L ++ ++ F S
Sbjct: 260 KYEGEYRYVNSRLITNSEEIAFYNGNKREKQTVHSVFRKLVEHLHNFILFRFSMGFIDSI 319
Query: 389 Y-RYLIQILPAAVVA--------PMYFSGKI-----EFGVINQSVSAFNHILGDFSLIVY 434
+YL ++ VV+ P + ++ + + + LG L
Sbjct: 320 IAKYLATVVGYLVVSRPFLDLSHPRHLKSTHSELLEDYYQSGRMLLRMSQALGRIVLAGR 379
Query: 435 QFQAISAFSAVIDRL---------GEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSK 485
+ ++ F+A I L G+++ + S K + V+ P
Sbjct: 380 EMTRLAGFTARITELMQVLKDLNHGKYERTMVSQQEKGIE-----------GVQVIPL-- 426
Query: 486 CNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
GA + ++ + + L TP L+RDL+ + ++L+ GP+G GK+SL R
Sbjct: 427 IPGAGEIIIADNIIKFDHVPLATPNGD-VLIRDLNFEVRSGANVLICGPNGCGKSSLFRV 485
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQ 604
+ LW G++T + RG +F++PQ
Sbjct: 486 LGELWPLFGGRLT-----------------------------------KPERGKLFYVPQ 510
Query: 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI 664
RPYM LG+LR Q+IYP E+ K + DL+
Sbjct: 511 RPYMTLGTLRDQVIYPDGREDQK-----------------------------RKGISDLV 541
Query: 665 --KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
+ L++V+LG+IL R D+ +W VLS GE+QR+A ARL KPQ +LDE TSA+
Sbjct: 542 LKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAV 601
Query: 723 DEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESL 782
E ++Y GIT +V HR++L+ H+ L + + N++ + I ++++
Sbjct: 602 SVDVEGYIYSHCRKVGITLFTVSHRKSLWKHHEYYLHM------DGRGNYEFKQITEDTV 655
|
Probable transporter. The nucleotide-binding fold acts as an ATP-binding subunit with ATPase activity. Homo sapiens (taxid: 9606) |
| >sp|P31826|YDDA_ECOLI Inner membrane ABC transporter ATP-binding protein YddA OS=Escherichia coli (strain K12) GN=yddA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 175 bits (444), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/447 (26%), Positives = 211/447 (47%), Gaps = 47/447 (10%)
Query: 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKD 189
L L ++ + P+W + + L + + A+ I V N DF+NAL+ K+
Sbjct: 8 LRMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILGVVKIQVWLNDWNNDFFNALSQKE 67
Query: 190 QEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQ-- 247
++ + +L++ + V + + + L +RWR W+T YY+ R+ D+ +Y Q
Sbjct: 68 TDKLWQLVLWFPALLGIFVLISVNKTWLIKLLTIRWREWLTDYYLNRWFADKNYYFTQIY 127
Query: 248 -SQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY-------------- 292
DNPDQRI +D+ LS S + LI+F+ IL+
Sbjct: 128 GEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQSLSMLITFTVILWESAGTLSFTVGGTE 187
Query: 293 -GIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY 351
I + +++ IGGT + +GK + LN +++ EA FR LV+ + AE IA
Sbjct: 188 WNIQGYMVYTVVLIVIGGTLFTHKVGKRIRPLNVEKQRSEATFRTNLVQHNKQAELIALS 247
Query: 352 AGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIE 411
E + Q L F + EN RL+ R L+++ + Y + +LP ++ P + SG+I
Sbjct: 248 NAESLQRQELSDNFHTIKENWHRLMNRQRWLDYWQNIYSRSLSVLPYFLLLPQFISGQIN 307
Query: 412 FGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI 471
G + +S AF + + S +Y++ ++ +AVIDRL EF + +
Sbjct: 308 LGGLMKSRQAFMLVSNNLSWFIYKYDELAELAAVIDRLYEFHQLTEQR------------ 355
Query: 472 CLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLV 531
PT+K P+ Q + + D +++TP +K L +L+ ++ + LL+
Sbjct: 356 ----------PTNK------PKNCQHAVQVADASIRTPDNKIIL-ENLNFHVSPGKWLLL 398
Query: 532 MGPSGSGKTSLLRAMAGLWSDGRGKIT 558
G SG+GKT+LL+ ++ W +G I+
Sbjct: 399 KGYSGAGKTTLLKTLSHCWPWFKGDIS 425
|
Escherichia coli (strain K12) (taxid: 83333) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| 225462350 | 722 | PREDICTED: ABC transporter D family memb | 0.842 | 0.919 | 0.777 | 0.0 | |
| 224109140 | 651 | peroxisomal membrane ABC transporter fam | 0.826 | 1.0 | 0.781 | 0.0 | |
| 255546622 | 742 | peroxisomal membrane protein, putative [ | 0.831 | 0.882 | 0.773 | 0.0 | |
| 297736082 | 697 | unnamed protein product [Vitis vinifera] | 0.810 | 0.916 | 0.761 | 0.0 | |
| 449444524 | 773 | PREDICTED: ABC transporter D family memb | 0.866 | 0.883 | 0.702 | 0.0 | |
| 147833028 | 1504 | hypothetical protein VITISV_004748 [Viti | 0.815 | 0.427 | 0.659 | 0.0 | |
| 413947759 | 762 | hypothetical protein ZEAMMB73_360015 [Ze | 0.832 | 0.860 | 0.693 | 0.0 | |
| 297848006 | 722 | abc transporter family protein [Arabidop | 0.817 | 0.891 | 0.699 | 0.0 | |
| 22330243 | 706 | ABC transporter D family member 2 [Arabi | 0.815 | 0.910 | 0.683 | 0.0 | |
| 357127880 | 754 | PREDICTED: ABC transporter D family memb | 0.841 | 0.879 | 0.680 | 0.0 |
| >gi|225462350|ref|XP_002265884.1| PREDICTED: ABC transporter D family member 2, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1058 bits (2737), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/666 (77%), Positives = 580/666 (87%), Gaps = 2/666 (0%)
Query: 122 DRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDF 181
D RK P++ TLFRRFWKVAAPYW+SDDKVQARLQLAAVFALT TTGISVGFNFLGRDF
Sbjct: 58 DVKRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDF 117
Query: 182 YNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQ 241
YNALA+KDQEQF KQLLYYLGAFAGGIPFFVLRDYARE LALRWRSWMT YYMERYLK+
Sbjct: 118 YNALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALRWRSWMTSYYMERYLKNW 177
Query: 242 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVV 301
TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSL FNAAVDLISFSNILYGIYPPLFVV
Sbjct: 178 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLAFFNAAVDLISFSNILYGIYPPLFVV 237
Query: 302 LLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLL 361
LLVYSIGGTAIS++LG+GLV LNFLQEKKEADFRYGLVR+RENAESIAFY+GE++EMQLL
Sbjct: 238 LLVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYSGEESEMQLL 297
Query: 362 LQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA 421
+QRFRSAFENLT+LLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA
Sbjct: 298 IQRFRSAFENLTQLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA 357
Query: 422 FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSF 481
FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD+LD+SSSK+LS+P E+I L Y VKS
Sbjct: 358 FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDILDNSSSKDLSDPSEEINLVYDDVKSL 417
Query: 482 PTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS 541
+ NG+++ +K QKLLDIE+LTL TP SK L+ DLSL I EK+HLLV GPSGSGKTS
Sbjct: 418 TLLESNGSMAMDKCQKLLDIENLTLLTPKSKTALIWDLSLEIYEKDHLLVTGPSGSGKTS 477
Query: 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601
LLRA+AGLWS GRGKITF VK E+ + +++ SQ+ + + N++SRG+FF
Sbjct: 478 LLRALAGLWSTGRGKITFSVKGDEDPLLGAAPLEA--TPSQDTYPGVEQPKNKDSRGIFF 535
Query: 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661
LPQRPYMVLG+LRQQL+YPTW E+V P +D + G +PFL LEN G KP+TD
Sbjct: 536 LPQRPYMVLGTLRQQLLYPTWAEDVIPVTDGDEPDGTLPFLMGVSTLENEGENPRKPTTD 595
Query: 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
D+I+ LEDV+LGYIL R NSLD+TYEWSSVLSLGEQQRLAFARLLLSKP +VLLDESTSA
Sbjct: 596 DIIRVLEDVRLGYILSRFNSLDSTYEWSSVLSLGEQQRLAFARLLLSKPNLVLLDESTSA 655
Query: 722 LDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQES 781
LDEANEAHLY+QIEAAGITY+S+GHRRTLY +H R L IS D NS+Q NW +E I+Q++
Sbjct: 656 LDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDT 715
Query: 782 LYNLSR 787
+YNLS+
Sbjct: 716 MYNLSK 721
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224109140|ref|XP_002315097.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] gi|222864137|gb|EEF01268.1| peroxisomal membrane ABC transporter family, PMP family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/663 (78%), Positives = 575/663 (86%), Gaps = 12/663 (1%)
Query: 126 KTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNAL 185
K P LNTLFRRFWKVAAPYWFS+DK ARLQLAAVFALT TTGISVGFNFLGRDFYNAL
Sbjct: 1 KVPGLNTLFRRFWKVAAPYWFSEDKEPARLQLAAVFALTLGTTGISVGFNFLGRDFYNAL 60
Query: 186 ADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYK 245
A+KDQEQF KQLLYYLGAFAGGIP FVLRDYARE L LRWRSWMTK+YMERYLK+QTFYK
Sbjct: 61 ANKDQEQFTKQLLYYLGAFAGGIPLFVLRDYAREILGLRWRSWMTKFYMERYLKNQTFYK 120
Query: 246 IQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVY 305
IQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLL Y
Sbjct: 121 IQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLAY 180
Query: 306 SIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365
SIGGTAIS++LG+ LVTLNFLQEKKEADFRYGLVRVRENAESIAF+ GE+NE+QLLLQRF
Sbjct: 181 SIGGTAISVFLGRELVTLNFLQEKKEADFRYGLVRVRENAESIAFFGGEENEIQLLLQRF 240
Query: 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI 425
+SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI
Sbjct: 241 KSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI 300
Query: 426 LGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSK 485
LGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK +S +E+I LTYC +S +
Sbjct: 301 LGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKCISSSVEEISLTYCDERSSLLLE 360
Query: 486 CNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
NG++ ++ QK+LD+E+LTL+TPTSKA L+RDLSLVIN+K+HLLV GPSGSGKTSLLRA
Sbjct: 361 SNGSILMDRCQKVLDLENLTLQTPTSKAILIRDLSLVINKKDHLLVTGPSGSGKTSLLRA 420
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605
+AGLW+ G+GKITFYV + + A TS + EL +NRN RG+FFLPQR
Sbjct: 421 LAGLWNTGQGKITFYVNEGNDPQAPTS------------SEELEGPINRNDRGIFFLPQR 468
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665
PYMVLG+LRQQL+YPTW ++V P SD AG +PFL G K SKP+TDDLI+
Sbjct: 469 PYMVLGTLRQQLLYPTWADDVIPTSDGGNPAGSLPFLMRNSSSGTSGGKRSKPTTDDLIQ 528
Query: 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LEDV+LGYIL R SLD+T+EWSSVLSLGEQQRLAFARLLLSKP++VLLDESTSALDEA
Sbjct: 529 VLEDVRLGYILSRFGSLDSTHEWSSVLSLGEQQRLAFARLLLSKPKVVLLDESTSALDEA 588
Query: 726 NEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNL 785
NE HLY QIEAAG+TYISVGHRRTLYD H R L I+TVD +S++ NW +E I+++SLYN+
Sbjct: 589 NEEHLYRQIEAAGMTYISVGHRRTLYDHHNRNLHITTVDPSSNERNWHVEPINRDSLYNI 648
Query: 786 SRR 788
R
Sbjct: 649 LNR 651
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546622|ref|XP_002514370.1| peroxisomal membrane protein, putative [Ricinus communis] gi|223546467|gb|EEF47966.1| peroxisomal membrane protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1038 bits (2683), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 513/663 (77%), Positives = 578/663 (87%), Gaps = 8/663 (1%)
Query: 125 RKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNA 184
R+ E+ TL RRFWKVAAPYWFSDDKVQARLQLAAVFALT ATTGISVGFNFLGRDFYNA
Sbjct: 86 REATEIQTLIRRFWKVAAPYWFSDDKVQARLQLAAVFALTLATTGISVGFNFLGRDFYNA 145
Query: 185 LADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFY 244
LA+KDQ+QF KQLLYYLG FAGGIPFFVLRDYARE L+LRWRSWMTKYYMERYLK+Q FY
Sbjct: 146 LANKDQDQFTKQLLYYLGGFAGGIPFFVLRDYAREILSLRWRSWMTKYYMERYLKNQAFY 205
Query: 245 KIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLV 304
KIQSQSI+DNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLF+VLL+
Sbjct: 206 KIQSQSIVDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFIVLLL 265
Query: 305 YSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364
YS+GGTAIS+YLG+GLV LNFLQEKKEADFRYGLVRVRENAESIAFY GEDNEMQLLLQR
Sbjct: 266 YSVGGTAISLYLGRGLVNLNFLQEKKEADFRYGLVRVRENAESIAFYGGEDNEMQLLLQR 325
Query: 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNH 424
FR+AFENLT LLISSRNLEFFT+GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNH
Sbjct: 326 FRNAFENLTELLISSRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNH 385
Query: 425 ILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTS 484
ILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK++S+ +E I L+YC++ +
Sbjct: 386 ILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKHISD-IEGISLSYCNI----SL 440
Query: 485 KCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544
+ NG+ EK QKLL+IE+LTLKTP SKATL++DLSL IN+ +HLLVMGPSGSGKTSLLR
Sbjct: 441 ESNGSKPIEKCQKLLEIENLTLKTPASKATLIQDLSLAINKNDHLLVMGPSGSGKTSLLR 500
Query: 545 AMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS-QNMNGELTRSMNRNSRGVFFLP 603
A+AGLW+ GRGKITFYV D ++ + + + EV+ Q+ + EL RNSRG+FFLP
Sbjct: 501 ALAGLWNTGRGKITFYVNDGDDFLSPAYPMSATEVDILQDKSKELEGPTGRNSRGIFFLP 560
Query: 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL 663
QRPYMVLG+LRQQL+YPTW ++V SD +KSA VPFL + + K SKP+TDDL
Sbjct: 561 QRPYMVLGTLRQQLLYPTWADDVVSTSDVSKSA--VPFLMGKASSKTMRGKPSKPTTDDL 618
Query: 664 IKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
++ LE V+L YIL R SLD+T EWSSVLSLGEQQRLAFARLLLSKP++VLLDE+TSALD
Sbjct: 619 VQVLEKVRLCYILSRFGSLDSTNEWSSVLSLGEQQRLAFARLLLSKPKLVLLDEATSALD 678
Query: 724 EANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLY 783
EANEAHLY+QIEAAGITYIS+GHRRTL ++H VL I+T D +S+ NW +E I+ SL
Sbjct: 679 EANEAHLYQQIEAAGITYISIGHRRTLCEYHNTVLHIATGDPLNSKRNWHIESINNGSLN 738
Query: 784 NLS 786
NLS
Sbjct: 739 NLS 741
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297736082|emb|CBI24120.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 507/666 (76%), Positives = 565/666 (84%), Gaps = 27/666 (4%)
Query: 122 DRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDF 181
D RK P++ TLFRRFWKVAAPYW+SDDKVQARLQLAAVFALT TTGISVGFNFLGRDF
Sbjct: 58 DVKRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDF 117
Query: 182 YNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQ 241
YNALA+KDQEQF KQLLYYLGAFAGGIPFFVLRDYARE LALRWRSWMT YYMERYLK+
Sbjct: 118 YNALANKDQEQFTKQLLYYLGAFAGGIPFFVLRDYAREILALRWRSWMTSYYMERYLKNW 177
Query: 242 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVV 301
TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSL FNAAVDLISFSNILYGIYPPLFVV
Sbjct: 178 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLAFFNAAVDLISFSNILYGIYPPLFVV 237
Query: 302 LLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLL 361
LLVYSIGGTAIS++LG+GLV LNFLQEKKEADFRYGLVR+RENAESIAFY+GE++EMQLL
Sbjct: 238 LLVYSIGGTAISVFLGRGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYSGEESEMQLL 297
Query: 362 LQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA 421
+QRFRSAFENLT+LLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA
Sbjct: 298 IQRFRSAFENLTQLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSA 357
Query: 422 FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSF 481
FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD+LD+SSSK+LS+P E+I L Y VKS
Sbjct: 358 FNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDILDNSSSKDLSDPSEEINLVYDDVKSL 417
Query: 482 PTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS 541
+ NG+++ +K QKLLDIE+LTL TP SK L+ DLSL I EK+HLLV GPSGSGKTS
Sbjct: 418 TLLESNGSMAMDKCQKLLDIENLTLLTPKSKTALIWDLSLEIYEKDHLLVTGPSGSGKTS 477
Query: 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601
LLRA+AGLW+ SQ+ + + N++SRG+FF
Sbjct: 478 LLRALAGLWT---------------------------TPSQDTYPGVEQPKNKDSRGIFF 510
Query: 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661
LPQRPYMVLG+LRQQL+YPTW E+V P +D + G +PFL LEN G KP+TD
Sbjct: 511 LPQRPYMVLGTLRQQLLYPTWAEDVIPVTDGDEPDGTLPFLMGVSTLENEGENPRKPTTD 570
Query: 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
D+I+ LEDV+LGYIL R NSLD+TYEWSSVLSLGEQQRLAFARLLLSKP +VLLDESTSA
Sbjct: 571 DIIRVLEDVRLGYILSRFNSLDSTYEWSSVLSLGEQQRLAFARLLLSKPNLVLLDESTSA 630
Query: 722 LDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFIDQES 781
LDEANEAHLY+QIEAAGITY+S+GHRRTLY +H R L IS D NS+Q NW +E I+Q++
Sbjct: 631 LDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQRNWYIEPINQDT 690
Query: 782 LYNLSR 787
+YNLS+
Sbjct: 691 MYNLSK 696
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444524|ref|XP_004140024.1| PREDICTED: ABC transporter D family member 2, chloroplastic-like [Cucumis sativus] gi|449475984|ref|XP_004154606.1| PREDICTED: ABC transporter D family member 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 984 bits (2543), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/685 (70%), Positives = 563/685 (82%), Gaps = 2/685 (0%)
Query: 104 TTEPAPEPEPDNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFAL 163
TT+ P + D + + R P+ L +RFWKVAAPYWFSDDKVQAR QLAAVFAL
Sbjct: 91 TTQSQDITTPGSGPDKNEEAQRPGPDPKILLKRFWKVAAPYWFSDDKVQARWQLAAVFAL 150
Query: 164 TFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLAL 223
T TTGISVGFNFLGRDFYNALA+KDQEQF KQLLYYLGAFAGGIP FVLRDYA++ L+L
Sbjct: 151 TLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSL 210
Query: 224 RWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVD 283
RWRSWMTK+YMERYLKDQ+FYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSL LFN+ VD
Sbjct: 211 RWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVD 270
Query: 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRE 343
LISFSNILYGIYPPLFV+LLVYSIGGTAIS++LGKGLV LNFLQEKKEADFRYGLVR+RE
Sbjct: 271 LISFSNILYGIYPPLFVILLVYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRE 330
Query: 344 NAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAP 403
NAESIAFY GE+NEMQL+LQRFRSA ENLT+LLISSRNLEFFT+GYRYLIQILPAAVVAP
Sbjct: 331 NAESIAFYGGEENEMQLILQRFRSAVENLTKLLISSRNLEFFTNGYRYLIQILPAAVVAP 390
Query: 404 MYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKN 463
MYFSGKIEFGVINQSVSAFNHILGDFS+IVYQFQAISAFSA+IDRLGEFDD+LD S+ K
Sbjct: 391 MYFSGKIEFGVINQSVSAFNHILGDFSIIVYQFQAISAFSAIIDRLGEFDDLLDGSAPKA 450
Query: 464 LSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523
LS EKI L Y +++ P + NG+++P+K QKLL+IE++TL P ATLVRDL+L++
Sbjct: 451 LSNISEKIHLMYSHMENSPLLESNGSIAPDKRQKLLEIENMTLGAPNG-ATLVRDLTLIV 509
Query: 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQN 583
EKEHLLVMGPSG GKTSLLR +AGLW+ G+GKITFY+KD E ++ + ++
Sbjct: 510 KEKEHLLVMGPSGCGKTSLLRVLAGLWNVGKGKITFYIKDYPEQLVSQNEGPTGAHTGED 569
Query: 584 MNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643
++ E +R +N+N +G+FFLPQRPYMVLG+LRQQL+YPTW E ++ A+S FLT
Sbjct: 570 VSKENSRPLNKNYQGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGDAESNVFPSFLT 629
Query: 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFA 703
A + NVG +PSTDDLI+ L+ V L Y+L R +SLD EWSSVLSLGEQQR+AFA
Sbjct: 630 GASNINNVGENPDRPSTDDLIQVLDKVGLSYLLTRFSSLDIICEWSSVLSLGEQQRIAFA 689
Query: 704 RLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTV 763
RLLLS+P++VLLDESTSALDE NEA LY+ I AGITYIS+GHR TL + H +L IS +
Sbjct: 690 RLLLSRPKLVLLDESTSALDETNEARLYKLIAGAGITYISIGHRGTLRNHHNSILHISKL 749
Query: 764 DQNSSQSNWKLEFIDQESLYNLSRR 788
+ +Q NW +E I ++ LY LS++
Sbjct: 750 -SDDNQRNWNIEPIIRDDLYELSKQ 773
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147833028|emb|CAN72812.1| hypothetical protein VITISV_004748 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 937 bits (2422), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/738 (65%), Positives = 544/738 (73%), Gaps = 95/738 (12%)
Query: 122 DRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDF 181
D RK P++ TLFRRFWKVAAPYW+SDDKVQARLQLAAVFALT TTGISVGFNFLGRDF
Sbjct: 789 DVKRKAPDIPTLFRRFWKVAAPYWWSDDKVQARLQLAAVFALTLGTTGISVGFNFLGRDF 848
Query: 182 YNALADKDQE-----------QFAKQLLYYLG-------------------AFAGGIPFF 211
YNALA + E +Y G AFAGGIPFF
Sbjct: 849 YNALASEISEFSPSLYLLIHVDLVVNCIYLFGQCKIRTKNSSPSNSCTILDAFAGGIPFF 908
Query: 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTAL 271
VLRDYARE LALRWRSWMT YYMERYLK+ TFYKIQSQSIIDNPDQRIVDDLSSFTGTAL
Sbjct: 909 VLRDYAREILALRWRSWMTSYYMERYLKNWTFYKIQSQSIIDNPDQRIVDDLSSFTGTAL 968
Query: 272 SFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKE 331
SFSL FNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAIS++LG+GLV LNFLQEKKE
Sbjct: 969 SFSLAFFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISVFLGRGLVNLNFLQEKKE 1028
Query: 332 ADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391
ADFRYGLVR+RENAESIAFY+GE++EMQLL+QRFRSAFENLT+LLISSRNLEFFTSGYRY
Sbjct: 1029 ADFRYGLVRIRENAESIAFYSGEESEMQLLIQRFRSAFENLTQLLISSRNLEFFTSGYRY 1088
Query: 392 LIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGE 451
LIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGE
Sbjct: 1089 LIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGE 1148
Query: 452 FDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS 511
FDD+LD+SSSK+LS+P E+I L Y VKS + NG+++ +K QKLLDIE+LTL TP S
Sbjct: 1149 FDDILDNSSSKDLSDPSEEINLVYDDVKSLTLLESNGSMAMDKCQKLLDIENLTLLTPKS 1208
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
K L+ DLSL I EK+HLLV GK+ A T
Sbjct: 1209 KTALIWDLSLEIYEKDHLLV-----------------------GKLVNEAVIHLCIAALT 1245
Query: 572 SDVDSL-------EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE 624
D D L SQ+ + + N++SRG+FFLPQRPYMVLG+LRQQL+YPTW E
Sbjct: 1246 GDEDPLLGAAPLEATPSQDTYPGVEQPKNKDSRGIFFLPQRPYMVLGTLRQQLLYPTWAE 1305
Query: 625 EVKPASDA-----------------------------------AKSAGLVPFLTSAQKLE 649
+V P +D K G +PFL LE
Sbjct: 1306 DVIPVTDGDEPDGGLNLAEFCAEEIGIPSETSFFGEVMLGSLVVKDVGTLPFLMGVSTLE 1365
Query: 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK 709
N G KP+TDD+I+ LEDV+LGYIL R NSLD+TYEWSSVLSLGEQQRLAFARLLLSK
Sbjct: 1366 NEGENPRKPTTDDIIRVLEDVRLGYILSRFNSLDSTYEWSSVLSLGEQQRLAFARLLLSK 1425
Query: 710 PQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQ 769
P +VLLDESTSALDEANEAHLY+QIEAAGITY+S+GHRRTLY +H R L IS D NS+Q
Sbjct: 1426 PNLVLLDESTSALDEANEAHLYQQIEAAGITYVSIGHRRTLYGYHNRRLHISAADPNSTQ 1485
Query: 770 SNWKLEFIDQESLYNLSR 787
NW +E I+Q+++YNLS+
Sbjct: 1486 RNWYIEPINQDTMYNLSK 1503
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413947759|gb|AFW80408.1| hypothetical protein ZEAMMB73_360015 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/669 (69%), Positives = 545/669 (81%), Gaps = 13/669 (1%)
Query: 120 DRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGR 179
D R +L TL RFWKVAAPYW+S+DK QARL+LAAVFALT TTGISVGFNFLGR
Sbjct: 87 DSQEKRGGTDLKTLATRFWKVAAPYWWSEDKTQARLRLAAVFALTLGTTGISVGFNFLGR 146
Query: 180 DFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239
DFYNALADKDQE+F QLLYYLGAFAGGIPFFVLRDYARETL+LRWRSWMT YYM+RY K
Sbjct: 147 DFYNALADKDQEKFTTQLLYYLGAFAGGIPFFVLRDYARETLSLRWRSWMTSYYMKRYFK 206
Query: 240 DQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLF 299
++TFYKIQSQSIIDNPDQRI DDLS+FTGTAL+FSLTLFNAAVDL+SFSNILYGIYPPLF
Sbjct: 207 NRTFYKIQSQSIIDNPDQRINDDLSAFTGTALAFSLTLFNAAVDLVSFSNILYGIYPPLF 266
Query: 300 VVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQ 359
+VL+VYS+GGTAIS++LGK LV LNF+QEKKEADFRYGLVRVRENAESIAFY GE+NE+Q
Sbjct: 267 IVLVVYSLGGTAISVFLGKNLVNLNFMQEKKEADFRYGLVRVRENAESIAFYGGEENELQ 326
Query: 360 LLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSV 419
LLL RFR AFENL+ LLI+SRNLEFFT+GYRYLIQILPAAVVAPMYFSGKIEFGVINQSV
Sbjct: 327 LLLDRFRRAFENLSELLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSV 386
Query: 420 SAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE--PLEKICLTY-C 476
SAFNHIL DFSLIV+QFQ+ISAFSAVIDRLGEFDD+LD + S S+ ++ I + +
Sbjct: 387 SAFNHILSDFSLIVFQFQSISAFSAVIDRLGEFDDLLDGNESSQSSQRDSIDGINIVFKS 446
Query: 477 SVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSG 536
S P+S NG+L+ +L+I +LTL TP S L+ L++ + +K+HLLVMGPSG
Sbjct: 447 SGPCVPSS--NGSLTQSDPCMVLEIRNLTLLTPRSGNVLITGLTMELKDKDHLLVMGPSG 504
Query: 537 SGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE---LTRSMN 593
SGKTSLLRA+AGLW+ G G+I ++V R T + S + +S N+ GE L S
Sbjct: 505 SGKTSLLRALAGLWTSGTGEIIYHV--RGSTQLQKPNPSSDKPSSMNLKGEEESLQSSKQ 562
Query: 594 RNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK--PASDAAKSAGLVPFLTSAQKLENV 651
R G+FF+PQRPYMVLG+LRQQL+YPTWTEEV+ P +D SA +PFL+ + V
Sbjct: 563 RRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEEVQHSPDNDDKNSADPLPFLSEVSTSDLV 622
Query: 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ 711
G KS PST +LI+ LEDVKLGYILPR N LD+T++W+SVLSLGEQQRLAFARLLL+ P
Sbjct: 623 GAKSEVPSTAELIEVLEDVKLGYILPRFNGLDSTHDWASVLSLGEQQRLAFARLLLATPT 682
Query: 712 IVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQ-NSSQS 770
+VLLDESTSALDEANEAHLY QIEAAGITY+S+GHR+TL+ FH + L IS D +++
Sbjct: 683 LVLLDESTSALDEANEAHLYSQIEAAGITYVSIGHRKTLHKFHNKALYISMSDSTDTNPR 742
Query: 771 NWKLEFIDQ 779
NW+L+ D+
Sbjct: 743 NWELKPADK 751
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297848006|ref|XP_002891884.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297337726|gb|EFH68143.1| abc transporter family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 464/663 (69%), Positives = 545/663 (82%), Gaps = 19/663 (2%)
Query: 123 RDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFY 182
R K EL TL+++F+KVA+PYWFS+DK QARL+LAAVFALT ATTGISVGFNFLGRDFY
Sbjct: 65 RPDKASELKTLWKKFYKVASPYWFSEDKDQARLRLAAVFALTLATTGISVGFNFLGRDFY 124
Query: 183 NALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQT 242
N+LA+KDQEQF KQL YYL AFAGGIPFFVLRDY +ETL+LRWRSWMTKYY++RYLKDQT
Sbjct: 125 NSLANKDQEQFTKQLFYYLCAFAGGIPFFVLRDYTKETLSLRWRSWMTKYYLQRYLKDQT 184
Query: 243 FYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVL 302
FYKIQSQS+IDNPDQRIVDDLSSFTGTALSFSLTL NA +DLISFSNIL+ IYPPLF+VL
Sbjct: 185 FYKIQSQSMIDNPDQRIVDDLSSFTGTALSFSLTLVNATIDLISFSNILFTIYPPLFLVL 244
Query: 303 LVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362
L+YS GGTAIS++LGKGLV LNFLQEKKEADFRY LVRVRENAESIAFY GE NEMQLLL
Sbjct: 245 LLYSFGGTAISVFLGKGLVNLNFLQEKKEADFRYSLVRVRENAESIAFYGGEQNEMQLLL 304
Query: 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAF 422
QRFRSAF+NLT LLI+SRNLEFFT GYRYLIQILP AVVAPMYFSGKIEFGVINQSVSAF
Sbjct: 305 QRFRSAFDNLTELLIASRNLEFFTDGYRYLIQILPVAVVAPMYFSGKIEFGVINQSVSAF 364
Query: 423 NHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFP 482
NHILGDFSL+VYQFQAIS+FSAVIDRLGEFDD+LD+S ++ S ++I LTY S +
Sbjct: 365 NHILGDFSLVVYQFQAISSFSAVIDRLGEFDDLLDNSIFRDPSGTADEIELTYQSEMNSS 424
Query: 483 TSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542
NG++ + +QK L+IE+LTL+TPT+ TLV +LS+ I +K+HLL+MGPSGSGKTSL
Sbjct: 425 LLDTNGSIKSQLNQKRLEIEELTLQTPTNGTTLVHNLSVDIYDKDHLLIMGPSGSGKTSL 484
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602
LRAMAGLW G+GKITFY+ + D T + + + NS+ R+S V FL
Sbjct: 485 LRAMAGLWRSGKGKITFYL---DSEDDLTQEASNTQENSE----------KRSSGDVLFL 531
Query: 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA-GLVPFLTSAQKLENVGRKSSKPSTD 661
PQRPYMVLGSLRQQL+YPTW+ V+ A+ + G P L ++ K +KP+TD
Sbjct: 532 PQRPYMVLGSLRQQLLYPTWSATVEEATPGGSNIDGSPPLLIR----DDGNEKCNKPTTD 587
Query: 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
DL++ LE V LG+I R LD+ +EWSSVLSLGEQQRLAFARLLLS+P++ LLDESTSA
Sbjct: 588 DLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFARLLLSQPKLALLDESTSA 647
Query: 722 LDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQNSSQSNWKLEFID-QE 780
LDEANEA LY+QI++AGITYIS+GHRRTL FH ++L+IST D S +SNW++E +D Q+
Sbjct: 648 LDEANEALLYQQIQSAGITYISIGHRRTLKKFHNKILQISTADPKSKESNWRIEDVDAQD 707
Query: 781 SLY 783
LY
Sbjct: 708 CLY 710
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22330243|ref|NP_175837.2| ABC transporter D family member 2 [Arabidopsis thaliana] gi|75324320|sp|Q6NLC1.1|AB2D_ARATH RecName: Full=ABC transporter D family member 2, chloroplastic; Short=ABC transporter ABCD.2; Short=AtABCD2; Flags: Precursor gi|45773818|gb|AAS76713.1| At1g54350 [Arabidopsis thaliana] gi|46402454|gb|AAS92329.1| At1g54350 [Arabidopsis thaliana] gi|332194962|gb|AEE33083.1| ABC transporter D family member 2 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/680 (68%), Positives = 542/680 (79%), Gaps = 37/680 (5%)
Query: 107 PAPEPEPDNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFA 166
P P PD K EL TL+++F+KVA+PYWFS+DK QARL+LAAVFALT A
Sbjct: 49 PQPSVRPD-----------KASELKTLWKKFYKVASPYWFSEDKDQARLRLAAVFALTLA 97
Query: 167 TTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWR 226
TTGISVGFNFLGRDFYN+LA+KDQEQF KQL YYL AFAGGIPFFVLRDY +ETL+LRWR
Sbjct: 98 TTGISVGFNFLGRDFYNSLANKDQEQFTKQLFYYLCAFAGGIPFFVLRDYTKETLSLRWR 157
Query: 227 SWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLIS 286
SWMTKYY++RYLKDQTFYKIQSQSIIDNPDQR+VDDLSSFTGTALSFSLTL NA +DLIS
Sbjct: 158 SWMTKYYLQRYLKDQTFYKIQSQSIIDNPDQRLVDDLSSFTGTALSFSLTLVNATIDLIS 217
Query: 287 FSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAE 346
FSNIL+ IYPPLF+VLL+YS GGTAIS++LGKGLV LNFLQEKKEADFRY LVRVRENAE
Sbjct: 218 FSNILFTIYPPLFLVLLLYSFGGTAISVFLGKGLVNLNFLQEKKEADFRYSLVRVRENAE 277
Query: 347 SIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYF 406
SIAFY GE NEMQLLLQRFRSAF+NLT LLI+SRNLEFFT GYRYLIQILP AVVAPMYF
Sbjct: 278 SIAFYGGEQNEMQLLLQRFRSAFDNLTELLIASRNLEFFTDGYRYLIQILPVAVVAPMYF 337
Query: 407 SGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE 466
SGKIEFGVINQSVSAFNHILGDFSL+VYQFQAIS+FSAVIDRLGEFDD+LD++ ++ S+
Sbjct: 338 SGKIEFGVINQSVSAFNHILGDFSLVVYQFQAISSFSAVIDRLGEFDDLLDNNIFRDPSD 397
Query: 467 PLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526
+++I LTY S + NG++ + +QK L+IE+LTL+TPT+ TLV +LS + +K
Sbjct: 398 TVDEIELTYQSEMNSSLLDTNGSIKSQPNQKRLEIEELTLQTPTNGTTLVHNLSADVYDK 457
Query: 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586
+HLL+MGPSGSGKTSLLRAMAGLW G+GKITFY+ E D D+ E
Sbjct: 458 DHLLIMGPSGSGKTSLLRAMAGLWRSGKGKITFYLD--PEVDFTQEKSDTQE-------- 507
Query: 587 ELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA-GLVPFLTS 644
N RG V FLPQRPYMVLGSLRQQL+YPTW+ V+ + + G P L
Sbjct: 508 ------NSGKRGDVLFLPQRPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLLIR 561
Query: 645 AQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR 704
E KP+TDDL++ LE V LG+I R LD+ +EWSSVLSLGEQQRLAFAR
Sbjct: 562 EDGNE-------KPTTDDLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFAR 614
Query: 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764
LLLS+P++ LLDESTSALDEANEA LY+QI++AGITYIS+GHRRTL FH ++L+IST D
Sbjct: 615 LLLSQPKLALLDESTSALDEANEAFLYQQIQSAGITYISIGHRRTLTKFHNKILQISTAD 674
Query: 765 QNSSQSNWKLEFID-QESLY 783
S++ NW++E +D Q+SLY
Sbjct: 675 PKSNERNWRIEDVDAQDSLY 694
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357127880|ref|XP_003565605.1| PREDICTED: ABC transporter D family member 2, chloroplastic-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 915 bits (2365), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/676 (68%), Positives = 547/676 (80%), Gaps = 13/676 (1%)
Query: 114 DNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVG 173
D+ G G ++ R +L TL RRFWKVAAPYW+S+DKVQARL+LAAVF LT ATTGISVG
Sbjct: 77 DSSGPGGEEK-RDGTDLKTLARRFWKVAAPYWWSEDKVQARLRLAAVFTLTLATTGISVG 135
Query: 174 FNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYY 233
FNFLGRDFYNALADKDQEQF KQLLYYLG FA GIPFFVLRDYARETL+LRWRSWMT YY
Sbjct: 136 FNFLGRDFYNALADKDQEQFTKQLLYYLGGFAVGIPFFVLRDYARETLSLRWRSWMTSYY 195
Query: 234 MERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYG 293
M+RY K++TFYKIQSQS+IDNPDQRI DDLSSFTGTAL+F+LTL NA VDL+SFSNILYG
Sbjct: 196 MKRYFKNRTFYKIQSQSLIDNPDQRINDDLSSFTGTALAFALTLLNAVVDLVSFSNILYG 255
Query: 294 IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAG 353
IYPPLF+VL+VYS+GGTAIS++LGK LV LNF+QEKKEADFRYGLVRVRENAESIAFY G
Sbjct: 256 IYPPLFIVLVVYSLGGTAISVFLGKNLVNLNFMQEKKEADFRYGLVRVRENAESIAFYGG 315
Query: 354 EDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFG 413
E+NE+QLLL RFR A++NLT LL++SRNLEFFT+GYRYLIQILPAAVVAPM+FSGKIEFG
Sbjct: 316 EENELQLLLARFRRAYQNLTELLVASRNLEFFTNGYRYLIQILPAAVVAPMFFSGKIEFG 375
Query: 414 VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICL 473
VINQSVSAFNHIL DFSLIV+QFQ+ISAFSAVIDRLGEFDD+LD ++ +LS + I
Sbjct: 376 VINQSVSAFNHILSDFSLIVFQFQSISAFSAVIDRLGEFDDLLD-ANEPSLSSRRDSIDG 434
Query: 474 TYCSVKSFPTS--KCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLV 531
KS S NG++ +L+I +LTL TP S+ L+ D S+ + +K+HLLV
Sbjct: 435 INIFFKSGSPSVLSSNGSVMQSDPGIVLEICNLTLLTPRSENVLLTDFSMELKDKDHLLV 494
Query: 532 MGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE--LT 589
MGPSGSGKTSLLRA+AGLW+ G G I ++ +D E TS++ S + ++ GE L
Sbjct: 495 MGPSGSGKTSLLRALAGLWTSGTGNIVYHARDSAEL--QTSNLGSDKPSNIKPEGEELLQ 552
Query: 590 RSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV--KPASDAAKSAGLVPFLTSAQK 647
S R G+FF+PQRPYMVLG+LRQQL+YPTWTE++ P +DA K+ +PFL+
Sbjct: 553 SSKQRRDNGIFFVPQRPYMVLGTLRQQLLYPTWTEKIHQSPINDAQKTD--LPFLSEVNT 610
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL 707
+ VG +S PST++LI+ LE V+LGYILPR N LD+ ++W+SVLSLGEQQRLAFARLLL
Sbjct: 611 SDGVGAESEMPSTEELIRVLEAVRLGYILPRFNGLDSMHDWASVLSLGEQQRLAFARLLL 670
Query: 708 SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQ-N 766
+KP +VLLDESTSALD+ NE HLY QIEAAGITYISVGHR+TL+ FH +VL IS D
Sbjct: 671 AKPTLVLLDESTSALDDTNEVHLYSQIEAAGITYISVGHRKTLHRFHNKVLYISKSDSTT 730
Query: 767 SSQSNWKLEFIDQESL 782
SS NW+L+ DQ+S+
Sbjct: 731 SSLRNWELKPTDQKSI 746
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 788 | ||||||
| TAIR|locus:2020138 | 706 | ABCD2 "ATP-binding cassette D2 | 0.635 | 0.709 | 0.701 | 1.7e-244 | |
| UNIPROTKB|Q607T0 | 571 | MCA1675 "ABC transporter, perm | 0.432 | 0.597 | 0.395 | 2.2e-76 | |
| UNIPROTKB|Q50614 | 639 | MT1867 "Uncharacterized ABC tr | 0.407 | 0.502 | 0.318 | 4.1e-44 | |
| ZFIN|ZDB-GENE-050517-30 | 604 | abcd4 "ATP-binding cassette, s | 0.530 | 0.692 | 0.252 | 1.3e-43 | |
| DICTYBASE|DDB_G0279919 | 750 | abcD3 "ABC transporter D famil | 0.272 | 0.286 | 0.291 | 3.7e-42 | |
| DICTYBASE|DDB_G0279917 | 734 | abcD1 "ABC transporter D famil | 0.217 | 0.232 | 0.293 | 3.8e-42 | |
| UNIPROTKB|F1N9P5 | 525 | ABCD4 "Uncharacterized protein | 0.421 | 0.632 | 0.283 | 5.5e-42 | |
| MGI|MGI:1349217 | 606 | Abcd4 "ATP-binding cassette, s | 0.464 | 0.603 | 0.261 | 2.6e-40 | |
| UNIPROTKB|D4A576 | 606 | Abcd4 "Protein Abcd4" [Rattus | 0.459 | 0.597 | 0.276 | 3.4e-40 | |
| UNIPROTKB|O14678 | 606 | ABCD4 "ATP-binding cassette su | 0.456 | 0.594 | 0.275 | 4.3e-40 |
| TAIR|locus:2020138 ABCD2 "ATP-binding cassette D2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1817 (644.7 bits), Expect = 1.7e-244, Sum P(2) = 1.7e-244
Identities = 364/519 (70%), Positives = 419/519 (80%)
Query: 126 KTPELNTLFRRFWKVAAPYWFSDDKVQARLQXXXXXXXXXXXXGISVGFNFLGRDFYNAL 185
K EL TL+++F+KVA+PYWFS+DK QARL+ GISVGFNFLGRDFYN+L
Sbjct: 57 KASELKTLWKKFYKVASPYWFSEDKDQARLRLAAVFALTLATTGISVGFNFLGRDFYNSL 116
Query: 186 ADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYK 245
A+KDQEQF KQL YYL AFAGGIPFFVLRDY +ETL+LRWRSWMTKYY++RYLKDQTFYK
Sbjct: 117 ANKDQEQFTKQLFYYLCAFAGGIPFFVLRDYTKETLSLRWRSWMTKYYLQRYLKDQTFYK 176
Query: 246 IQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVY 305
IQSQSIIDNPDQR+VDDLSSFTGTALSFSLTL NA +DLISFSNIL+ IYPPLF+VLL+Y
Sbjct: 177 IQSQSIIDNPDQRLVDDLSSFTGTALSFSLTLVNATIDLISFSNILFTIYPPLFLVLLLY 236
Query: 306 SIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365
S GGTAIS++LGKGLV LNFLQEKKEADFRY LVRVRENAESIAFY GE NEMQLLLQRF
Sbjct: 237 SFGGTAISVFLGKGLVNLNFLQEKKEADFRYSLVRVRENAESIAFYGGEQNEMQLLLQRF 296
Query: 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI 425
RSAF+NLT LLI+SRNLEFFT GYRYLIQILP AVVAPMYFSGKIEFGVINQSVSAFNHI
Sbjct: 297 RSAFDNLTELLIASRNLEFFTDGYRYLIQILPVAVVAPMYFSGKIEFGVINQSVSAFNHI 356
Query: 426 LGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSK 485
LGDFSL+VYQFQAIS+FSAVIDRLGEFDD+LD++ ++ S+ +++I LTY S +
Sbjct: 357 LGDFSLVVYQFQAISSFSAVIDRLGEFDDLLDNNIFRDPSDTVDEIELTYQSEMNSSLLD 416
Query: 486 CNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
NG++ + +QK L+IE+LTL+TPT+ TLV +LS + +K+HLL+MGPSGSGKTSLLRA
Sbjct: 417 TNGSIKSQPNQKRLEIEELTLQTPTNGTTLVHNLSADVYDKDHLLIMGPSGSGKTSLLRA 476
Query: 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQ 604
MAGLW G+GKITFY+ D E VD + S N RG V FLPQ
Sbjct: 477 MAGLWRSGKGKITFYL-DPE--------VDFTQEKSDTQE-------NSGKRGDVLFLPQ 520
Query: 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA-GLVPFL 642
RPYMVLGSLRQQL+YPTW+ V+ + + G P L
Sbjct: 521 RPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLL 559
|
|
| UNIPROTKB|Q607T0 MCA1675 "ABC transporter, permease family protein" [Methylococcus capsulatus str. Bath (taxid:243233)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 2.2e-76, Sum P(2) = 2.2e-76
Identities = 138/349 (39%), Positives = 207/349 (59%)
Query: 169 GISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSW 228
G++V +++GRDF A+ ++ F + YLG FA V+ Y E L L WR W
Sbjct: 48 GLNVLNSYVGRDFMTAIENRYMGGFVWYTVLYLGVFAATTVAAVIYRYCEERLGLLWREW 107
Query: 229 MTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFS 288
+T+ + YL + +Y + + NPDQRI +D+ +FT T LSF+L L N++ +++FS
Sbjct: 108 LTRRLVNAYLDGRVYYCLDESQEVANPDQRIAEDVKAFTVTTLSFTLMLLNSSFTVLAFS 167
Query: 289 NILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESI 348
+++ I P LF V + Y++ G+ ++ LG+ LV LN+ Q +EADFR GL+ VRENAESI
Sbjct: 168 GVMWSISPLLFGVAVAYAVAGSYFTVRLGRPLVQLNYDQLDREADFRAGLIHVRENAESI 227
Query: 349 AFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG 408
A E LL++ + N RL+ +RNL FFT+ Y YLI ++PA VVAP++ G
Sbjct: 228 ALLHRERRIQSRLLRQLEALTANFRRLIAVNRNLGFFTTWYNYLIPVIPALVVAPLFIEG 287
Query: 409 KIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL 468
K+EFGVI QS AF ++LG FSLIV QFQ+ISA++AVI RL ++ S ++ P+
Sbjct: 288 KVEFGVITQSAMAFTYLLGAFSLIVTQFQSISAYTAVIARLRGLIQAVEKVRS-GITSPI 346
Query: 469 EKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVR 517
E +C C ++ K SP + L+D L+++ P L+R
Sbjct: 347 E-VC-EMCDRIAY--EKLT-LYSPRDGRVLID--RLSMEIPAGGRLLIR 388
|
|
| UNIPROTKB|Q50614 MT1867 "Uncharacterized ABC transporter ATP-binding protein Rv1819c/MT1867" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 4.1e-44, Sum P(2) = 4.1e-44
Identities = 118/371 (31%), Positives = 182/371 (49%)
Query: 212 VLRD-YARETLALRWRSWMTKYYMERYLKDQTFYK-IQSQSIIDNPDQRIVDDLSSFT-- 267
V+ D Y + + WR W+T + + +L + +Y+ + IDNPDQRI D+ FT
Sbjct: 139 VMADIYLTQRFIIAWRVWLTHHLTQDWLDGRAYYRDLFIDETIDNPDQRIQQDVDIFTAG 198
Query: 268 --GT--ALS---FSLTLFNAA---VDLISFSNIL---------YGIYPP--LFVVLLVYS 306
GT A S S LF A + +ISF+ IL +G+ P +F +LVY
Sbjct: 199 AGGTPNAPSNGTASTLLFGAVQSIISVISFTAILWNLSGTLNIFGVSIPRAMFWTVLVYV 258
Query: 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366
T IS +G+ L+ L+F EK A FRY LVR+R+ AE++ FY GE E L +RF
Sbjct: 259 FVATVISFIIGRPLIWLSFRNEKLNAAFRYALVRLRDAAEAVGFYRGERVEGTQLQRRFT 318
Query: 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHIL 426
+N R + S + I LP + AP F+G+I+FG + Q+ ++F +I
Sbjct: 319 PVIDNYRRYVRRSIAFNGWNLSVSQTIVPLPWVIQAPRLFAGQIDFGDVGQTATSFGNIH 378
Query: 427 GDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKC 486
S + A ++F A I RL D ++ K + P +V + P
Sbjct: 379 DSLSFFRNNYDAFASFRAAIIRLHGLVD----ANEKGRALP---------AVLTRP---- 421
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
S ++S +L DIE ++TP L+ L + ++ L++ G SG+GKT+LLR++
Sbjct: 422 ----SDDESVELNDIE---VRTPAGDR-LIDPLDVRLDRGGSLVITGRSGAGKTTLLRSL 473
Query: 547 AGLWSDGRGKI 557
A LW G +
Sbjct: 474 AELWPYASGTL 484
|
|
| ZFIN|ZDB-GENE-050517-30 abcd4 "ATP-binding cassette, sub-family D (ALD), member 4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 314 (115.6 bits), Expect = 1.3e-43, Sum P(2) = 1.3e-43
Identities = 113/448 (25%), Positives = 197/448 (43%)
Query: 126 KTPELNTLF-RRFW---KVAAPYWFSDDKVQARLQXXXXXXXXXXXXGISVGFNFLGRDF 181
K P+L+ F +RF+ K+ P W S+ V+ + VG + F
Sbjct: 10 KRPKLDWKFLQRFYSILKILFPSW-SNQNVRMFMTLLGVTLSVQLVI-YQVGL--IPSQF 65
Query: 182 YNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQ 241
Y L+++ +F +++ + L Y L +RWR +T+ Y K +
Sbjct: 66 YRVLSERSYGKFKDLVVFAVVLILINSTLKSLDQYICSLLYVRWRKTLTEDLHHLYFKGR 125
Query: 242 TFYKIQSQ-SIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPL-F 299
+Y + IDNPDQRI D+ + + L + ++ + + F
Sbjct: 126 VYYTLNILCKDIDNPDQRISQDVERLCKQMSTMASRLLITPFTVTYYTYQCFNSAGWIGF 185
Query: 300 VVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGE----- 354
V + Y + GT I+ L +V++ QEK E DFR+ +++R NAES AFY
Sbjct: 186 VSIFSYFVVGTIINKILIGPIVSMLVEQEKLEGDFRFKHMQIRVNAESAAFYRASNVEHM 245
Query: 355 --DNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMY---FSGK 409
D ++Q+LL RS L + ++ S Y++ +P + A Y G+
Sbjct: 246 RTDRKLQMLLSTQRSLMNKELWLYLGVNTFDYMGSILSYIVIAIP--IFAGNYDHLTPGE 303
Query: 410 IEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLE 469
+ +I+++ +++ F+ ++ +S + R+GE + + + K E
Sbjct: 304 LS-ALISKNAFVCIYLINCFTQLIDLSTTVSDVAGYTHRIGELQEAMADIAKKQRDE--- 359
Query: 470 KICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHL 529
Y V S S + L + ++ L K+P S+ LV+DL+L I++ HL
Sbjct: 360 ---YQYDPV-SKAESNSDRELQSVPADTAFVLDRLCYKSPLSEELLVKDLTLSISQGTHL 415
Query: 530 LVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
LV+G +G+GKTSLLR + LW RG +
Sbjct: 416 LVVGNTGTGKTSLLRVLNSLWEPCRGSV 443
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| DICTYBASE|DDB_G0279919 abcD3 "ABC transporter D family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 203 (76.5 bits), Expect = 3.7e-42, Sum P(4) = 3.7e-42
Identities = 65/223 (29%), Positives = 95/223 (42%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQXXXXXXXXXXXXGISVGFNFLGRDFYNALADKDQEQ 192
LF+RF K+ + + V L IS L + Y +L D+
Sbjct: 56 LFKRFIKIVIILY--EKPVIPLLLFLLLFGSGVSQTYISKFTGILLSNIYGSLTSGDKFL 113
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQS-QSI 251
F L+ A G F + + +A WR + Y Y K FYKI +
Sbjct: 114 FVSSLIKGCFAIGGSALFDAIIKFIVSIMAWNWRKTLCLYIQNVYFKKSLFYKILAFDDR 173
Query: 252 IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGI---YPPLFVVLLVYSIG 308
IDNPDQRI D+ +FT S + ++ ++ + Y Y PL V Y
Sbjct: 174 IDNPDQRITSDIDNFTTLLSSIVSQCITGPMVVVYYTYLCYTTIDWYAPLIVY--GYFFL 231
Query: 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY 351
G I+ + +V++N+LQ+K E DFRY R+R +ESIA Y
Sbjct: 232 GYFINKLVMSPMVSINYLQDKLEGDFRYLHQRIRNFSESIALY 274
|
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| DICTYBASE|DDB_G0279917 abcD1 "ABC transporter D family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 3.8e-42, Sum P(4) = 3.8e-42
Identities = 52/177 (29%), Positives = 80/177 (45%)
Query: 180 DFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239
D Y + D+ F +L A G + ++ +A WR + Y Y K
Sbjct: 90 DIYASFTSGDKVFFLSSVLKAGFAIGGSALLAAIINFIVSIMAWNWRKTLCLYIQNVYFK 149
Query: 240 DQTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGI---Y 295
FYKI + IDNPDQRI D+ +FT S + ++ ++ + Y Y
Sbjct: 150 KSLFYKILAFDDRIDNPDQRITSDIDNFTTLLASIVSQCITGPMVVVYYTYLCYTTIDWY 209
Query: 296 PPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYA 352
PL V + G I+ + +V++N+LQ+K E DFR R+R +ESIA Y+
Sbjct: 210 APLIVYGFFFL--GYLINKLVMSPMVSINYLQDKLEGDFRSLHQRIRNFSESIALYS 264
|
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| UNIPROTKB|F1N9P5 ABCD4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 5.5e-42, Sum P(2) = 5.5e-42
Identities = 99/349 (28%), Positives = 169/349 (48%)
Query: 221 LALRWRSWMTKYYMERYLKDQTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFN 279
L + WR +T+Y Y + Q +Y + + IDNPDQRI D+ F S + L
Sbjct: 13 LYVSWRKSLTEYLHSCYFQGQVYYSLHILREDIDNPDQRISQDVERFCRQLSSMASKLVI 72
Query: 280 AAVDLISFSNILY---GIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRY 336
+ L ++ + G P V + Y + GT I+ L +V+ QEK E DFR+
Sbjct: 73 SPFTLAYYTYQCFHSTGWLGP--VSIFGYFVIGTIINKVLMSPIVSKLVQQEKLEGDFRF 130
Query: 337 GLVRVRENAESIAFY-AGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQI 395
+++R NAE AFY AG M+ +R +S + L+ L + + YL I
Sbjct: 131 KHMQIRVNAEPAAFYRAGRVEHMRTD-RRLQSLLQTQRELIGKELWLYIGINTFDYLGSI 189
Query: 396 LPAAVVAPMYFSG------KIEFG-VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDR 448
L ++A FSG E +++++ +++ FS ++ ++ + R
Sbjct: 190 LSYVIIAIPIFSGVYGDLSPTELSALVSKNAFVSIYLISCFSQLIDLSSTVTDVAGYTHR 249
Query: 449 LGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKT 508
+GE + L S + +E L + + S+ + +S +G PE +E +TL
Sbjct: 250 IGELQETLLSLGRRE-NESLSTVTYSQISLSLWWSSSESGE-DPEPRDTAFLLERVTLSV 307
Query: 509 PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
P+S L++DLSL I++ + +++MG +G+GKTSLLR + GLW +G +
Sbjct: 308 PSSGKLLIKDLSLRISQGDSMMIMGNTGTGKTSLLRVLGGLWESTQGNV 356
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| MGI|MGI:1349217 Abcd4 "ATP-binding cassette, sub-family D (ALD), member 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 2.6e-40, Sum P(2) = 2.6e-40
Identities = 102/390 (26%), Positives = 173/390 (44%)
Query: 181 FYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKD 240
+Y L +KD + F L + + L + WR +T++ Y +
Sbjct: 67 YYGVLGNKDLDGFKALTLLAVTLIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHHLYFRA 126
Query: 241 QTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY---GIYP 296
+ +Y + + IDNPDQRI D+ F S + L + L ++ + G
Sbjct: 127 RVYYTLNVLRDDIDNPDQRISQDVERFCRQLSSVTSKLIISPFTLTYYTYQCFQSTGWLG 186
Query: 297 PLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY-AG-- 353
P V + Y I GT ++ L +VT QEK E DFR+ +++R NAE AFY AG
Sbjct: 187 P--VSIFGYFIVGTMVNKTLMGPIVTKLVQQEKLEGDFRFKHMQIRVNAEPAAFYRAGLV 244
Query: 354 ----EDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFS-G 408
D +Q LLQ R L I ++ S Y++ +P + + +Y
Sbjct: 245 EHMRTDRRLQRLLQTQRELMSRELWLYIGINTFDYLGSILSYVVIAIP--IFSGVYGDLS 302
Query: 409 KIEFG-VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467
E +++++ +++ F+ ++ +S + R+GE + L S K S+
Sbjct: 303 PTELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGELQEALLDMSRK--SQD 360
Query: 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKE 527
E + + K G + E S ++ +++ P+S L++DLSL I E +
Sbjct: 361 CEAL-----GESEWDLDKTPGCPTTEPSDTAFLLDRVSILAPSSDKPLIKDLSLKICEGQ 415
Query: 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
LL+ G +G+GKTSLLR + GLW +G +
Sbjct: 416 SLLITGNTGTGKTSLLRVLGGLWEGMKGSV 445
|
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| UNIPROTKB|D4A576 Abcd4 "Protein Abcd4" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 3.4e-40, Sum P(2) = 3.4e-40
Identities = 109/394 (27%), Positives = 185/394 (46%)
Query: 181 FYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARET---LALRWRSWMTKYYMERY 237
+Y L +KD + F + L +L A A + L+ + + T L + WR +T++ + Y
Sbjct: 67 YYGVLGNKDLDGF--KALTFL-AVALIVLNSTLKSFDQFTCNLLYVSWRKDLTEHLHQLY 123
Query: 238 LKDQTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY---G 293
+ + +Y + + IDNPDQRI D+ F S + L + L ++ + G
Sbjct: 124 FRARVYYTLNVLRDDIDNPDQRISQDVERFCRQLSSVTSKLIISPFTLAYYTYQCFQSTG 183
Query: 294 IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY-A 352
P V + Y I GT ++ L +VT QEK E DFR+ +++R NAE AFY A
Sbjct: 184 WLGP--VSIFGYFILGTMVNKTLMGPIVTKLVQQEKLEGDFRFKHMQIRVNAEPAAFYRA 241
Query: 353 G------EDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYF 406
G D +Q LLQ R L I ++ S Y++ +P + +Y
Sbjct: 242 GLVEHMRTDRRLQRLLQTQRELMSRELWLYIGINTFDYLGSILSYVVIAIP--IFRGVYG 299
Query: 407 S-GKIEFG-VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD-VLDSSSSKN 463
E +++++ +++ F+ ++ +S + R+GE + +LD S +
Sbjct: 300 DLSPTELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGELQEALLDMSRKSH 359
Query: 464 LSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523
E L + +PT++ P + LLD +++ P+S L++DLSL I
Sbjct: 360 DCETLGESEWDLDKAPGWPTTE------PSDTAFLLD--RVSILAPSSDKPLIKDLSLKI 411
Query: 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
E + LL+ G +G+GKTSLLR + GLW +G +
Sbjct: 412 CEGQSLLITGNTGTGKTSLLRVLGGLWESMKGSV 445
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| UNIPROTKB|O14678 ABCD4 "ATP-binding cassette sub-family D member 4" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 298 (110.0 bits), Expect = 4.3e-40, Sum P(2) = 4.3e-40
Identities = 109/396 (27%), Positives = 188/396 (47%)
Query: 181 FYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARET---LALRWRSWMTKYYMERY 237
+Y L +KD E F + L +L + L+ + + T L + WR +T++ Y
Sbjct: 67 YYGVLGNKDLEGF--KTLTFLAVMLIVLNS-TLKSFDQFTCNLLYVSWRKDLTEHLHRLY 123
Query: 238 LKDQTFYKIQS-QSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY---G 293
+ + +Y + + IDNPDQRI D+ F S + L + L+ ++ + G
Sbjct: 124 FRGRAYYTLNVLRDDIDNPDQRISQDVERFCRQLSSMASKLIISPFTLVYYTYQCFQSTG 183
Query: 294 IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFL-QEKKEADFRYGLVRVRENAESIAFY- 351
P V + Y I GT ++ L G + + + QEK E DFR+ +++R NAE AFY
Sbjct: 184 WLGP--VSIFGYFILGTVVNKTL-MGPIVMKLVHQEKLEGDFRFKHMQIRVNAEPAAFYR 240
Query: 352 AGE------DNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMY 405
AG D +Q LLQ R L I ++ S Y++ +P + + +Y
Sbjct: 241 AGHVEHMRTDRRLQRLLQTQRELMSKELWLYIGINTFDYLGSILSYVVIAIP--IFSGVY 298
Query: 406 FSGKIEFGVINQSVS--AFN--HILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSS 461
G + ++ VS AF +++ F+ ++ +S + R+G+ + L S
Sbjct: 299 --GDLSPAELSTLVSKNAFVCIYLISCFTQLIDLSTTLSDVAGYTHRIGQLRETLLDMSL 356
Query: 462 KNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521
K S+ E + + + + P G + E + +E +++ P+S L++DLSL
Sbjct: 357 K--SQDCEILGESEWGLDTPP-----GWPAAEPADTAFLLERVSISAPSSDKPLIKDLSL 409
Query: 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
I+E + LL+ G +G+GKTSLLR + GLW+ RG +
Sbjct: 410 KISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSV 445
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q6NLC1 | AB2D_ARATH | 3, ., 6, ., 3, ., - | 0.6838 | 0.8159 | 0.9107 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.3 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.X.1382.1 | peroxisomal membrane ABC transporter family, PMP family (651 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | estExt_Genewise1_v1.C_LG_II2661 | hypothetical protein (151 aa) | • | • | 0.496 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 788 | |||
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-164 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 4e-58 | |
| pfam06472 | 282 | pfam06472, ABC_membrane_2, ABC transporter transme | 5e-54 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-34 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 6e-29 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-28 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-24 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-23 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-23 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 7e-23 | |
| COG1133 | 405 | COG1133, SbmA, ABC-type long-chain fatty acid tran | 5e-22 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-21 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-21 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-20 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-20 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-20 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-20 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 8e-20 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-20 | |
| PRK12369 | 326 | PRK12369, PRK12369, putative transporter; Reviewed | 7e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-18 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-18 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-17 | |
| pfam05992 | 315 | pfam05992, SbmA_BacA, SbmA/BacA-like family | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-16 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-16 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-15 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 3e-15 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 5e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-15 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-14 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-14 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 5e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-14 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-14 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-13 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-13 | |
| PRK11098 | 409 | PRK11098, PRK11098, microcin B17 transporter; Revi | 3e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-13 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-13 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-12 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-12 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-12 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 5e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-12 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-12 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-11 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-10 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-10 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-10 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-10 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-10 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 5e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 5e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 6e-10 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-10 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 7e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 7e-10 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-09 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-09 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-09 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 4e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-09 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 5e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 6e-09 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-09 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-08 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-08 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-08 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 3e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-08 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 4e-08 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-08 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 6e-08 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 6e-08 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 9e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 9e-08 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-07 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-07 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-07 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 2e-07 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-07 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-07 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-07 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-07 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-07 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 4e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 6e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-07 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 7e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-07 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 8e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-06 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-06 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-06 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-06 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-06 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-06 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-06 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 3e-06 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-06 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 3e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 4e-06 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 4e-06 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 4e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 4e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-06 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-06 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 6e-06 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-06 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 8e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 9e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 1e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 1e-05 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 1e-05 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-05 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-05 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-05 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-05 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 4e-05 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 5e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 5e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 5e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 5e-05 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-05 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-05 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 7e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-05 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 8e-05 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 8e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 8e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-05 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-04 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-04 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 2e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-04 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 4e-04 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 4e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 4e-04 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-04 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 4e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-04 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-04 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 5e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 6e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 6e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 6e-04 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 6e-04 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-04 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 8e-04 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.001 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 0.001 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.001 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.001 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 0.002 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 0.002 | |
| cd01130 | 186 | cd01130, VirB11-like_ATPase, Type IV secretory pat | 0.002 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 0.002 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 0.002 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 0.002 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 0.002 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.002 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.002 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 0.003 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 0.004 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 0.004 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.004 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.004 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 488 bits (1258), Expect = e-164
Identities = 220/649 (33%), Positives = 320/649 (49%), Gaps = 106/649 (16%)
Query: 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQE 191
+L R+FW +A YW S + +A L L + AL + V N FYNALA +D
Sbjct: 24 SLGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLA 83
Query: 192 QFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQ-- 249
F +QL + + V + + + L LRWR W+TK ++R+L + +Y++
Sbjct: 84 AFWQQLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGG 143
Query: 250 -SIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL---------------YG 293
+IDNPDQRI +D+ +FT T L S L + + LISF+ IL +G
Sbjct: 144 IGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFG 203
Query: 294 IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAG 353
I + +++Y+I + ++ +G+ L+ LNF ++K EADFRY LVRVRENAE+IA Y G
Sbjct: 204 IPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRG 263
Query: 354 EDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFG 413
E E + L RF + N RL+ + L +F GY +L +LP + AP YFSG+I FG
Sbjct: 264 EKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFG 323
Query: 414 VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICL 473
+ Q+V AF + S + + AI+ + A + RL EF L+++ +
Sbjct: 324 GLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRI 383
Query: 474 TYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMG 533
+ + ++ +E+L+L+TP + TL+ +L+ + E LL+ G
Sbjct: 384 DF-------DDNADHGIT---------LENLSLRTPDGQ-TLLSELNFEVRPGERLLITG 426
Query: 534 PSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN 593
SG+GKTSLLRA+AGLW G G+I+
Sbjct: 427 ESGAGKTSLLRALAGLWPWGSGRISMPADSA----------------------------- 457
Query: 594 RNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653
+ FLPQRPY+ G+LR+ L YP
Sbjct: 458 -----LLFLPQRPYLPQGTLREALCYP--------------------------------N 480
Query: 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIV 713
+ S +L+ L V LG + RL+ D W VLS GEQQRLAFARLLL KP+ V
Sbjct: 481 AAPDFSDAELVAVLHKVGLGDLAERLDEEDR---WDRVLSGGEQQRLAFARLLLHKPKWV 537
Query: 714 LLDESTSALDEANEAHLYEQIEAA--GITYISVGHRRTLYDFHKRVLRI 760
LDE+TSALDE E LY+ ++ T ISVGHR TL++FH R L +
Sbjct: 538 FLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLEL 586
|
Length = 604 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 4e-58
Identities = 177/694 (25%), Positives = 273/694 (39%), Gaps = 131/694 (18%)
Query: 108 APEPEPDNDGDGD-RDRDRKTPELNTLF----RRFWKVAAPYWFSDDKVQARLQLAAVFA 162
+ + E G + +K +N +F K+ P F + L + +
Sbjct: 48 SGKEELTIVGKHSTIEGAKKKAHVNGVFLGKLDFLLKILIPRVFCKETGLLILIAFLLVS 107
Query: 163 LTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV---LRDYARE 219
T+ SV L +++ + FA L + F P Y +
Sbjct: 108 RTYL----SVYVATLDGQIESSIVRRSPRNFAWILFKW---FLIAPPASFINSAIKYLLK 160
Query: 220 TLALRWRSWMTKYYMERYLKDQTFYKI-QSQSIIDNPDQRIVDDLSSFT-GTALSFSLTL 277
L LR+R +T+Y +YL TFYK+ S I NPDQ + D+ F +S L
Sbjct: 161 ELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYS-NL 219
Query: 278 FNAAVDLISFSNIL---YGIYPP--LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEA 332
+D+I +S L G P LF L + T + +GK L ++ E
Sbjct: 220 TKPILDVILYSFKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGK----LTVEEQALEG 275
Query: 333 DFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYL 392
++RY R+ N+E IAFY G E + ++ F E+L ++ F Y +L
Sbjct: 276 EYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHLNLII-------KFRFSYGFL 328
Query: 393 IQILPA---------AVVAPMYFSGKIEFGVI--NQSVSAF----------NHILGDFSL 431
I+ AV P++ F + + + F LG L
Sbjct: 329 DNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLML 388
Query: 432 IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALS 491
++ F+A R+ VLD S N P + ++S N L
Sbjct: 389 AGRDMTRLAGFTA---RVDTLLQVLDDVKSGNFKRPRVE------EIESGREGGRNSNLV 439
Query: 492 PEKSQKLLD-----IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
P + E++ L TP + L+ LS + +LL+ GP+G GK+SL R +
Sbjct: 440 PGRGIVEYQDNGIKFENIPLVTP-NGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRIL 498
Query: 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606
LW G LT+ +F++PQRP
Sbjct: 499 GELWP-------------------------------VYGGRLTKPAKGK---LFYVPQRP 524
Query: 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666
YM LG+LR Q+IYP +E++ K GL S DL +
Sbjct: 525 YMTLGTLRDQIIYPDSSEDM-------KRRGL--------------------SDKDLEQI 557
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
L++V+L +IL R +W VLS GE+QR+A ARL KPQ +LDE TSA+
Sbjct: 558 LDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDV 617
Query: 727 EAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760
E ++Y GIT SV HR++L+ +H+ +L +
Sbjct: 618 EGYMYRLCREFGITLFSVSHRKSLWKYHEYLLYM 651
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|219046 pfam06472, ABC_membrane_2, ABC transporter transmembrane region 2 | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 5e-54
Identities = 83/277 (29%), Positives = 128/277 (46%), Gaps = 4/277 (1%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
RR W++ F + L A+ AL T +SV L AL K+
Sbjct: 7 FLRRLWRLLKIL-FPRWFSKEAGLLLALAALLVLRTFLSVLVAQLDGQLVKALVAKNARG 65
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQS-QSI 251
F + LL + Y + LALR+R+ +T++ + YLK++T+YK+ +
Sbjct: 66 FIRLLLKWALLAVPASFVNSALKYLTQKLALRFRTRLTRHLHDEYLKNRTYYKLSNLDGR 125
Query: 252 IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLL-VYSIGGT 310
IDNPDQRI D+ F ++ L +D+I F+ IL+ + L +L +Y + T
Sbjct: 126 IDNPDQRITQDVEKFCSSSSDLYSNLLKPILDIILFTFILWRLSGWLGPAILFLYVLLST 185
Query: 311 AISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFE 370
I LG L +++ E DFRY R+ NAE IAFY GE+ E + L +RF+S +
Sbjct: 186 VILRRLGPPFGKLVAEEQRLEGDFRYLHSRLITNAEEIAFYRGEEREKKQLQRRFKSLID 245
Query: 371 NLTRLLISSRNLEFFTSGY-RYLIQILPAAVVAPMYF 406
++ R+L F +Y IL + A F
Sbjct: 246 HMRRILRRRLWYGFIEDFVLKYTWSILGYVLCAVPIF 282
|
This domain covers the transmembrane of a small family of ABC transporters and shares sequence similarity with pfam00664. Mutations in this domain in human ABCD3 (PMP70) are believed responsible for Zellweger Syndrome-2; mutations in human ABCD1 (ALD) are responsible for recessive X-linked adrenoleukodystrophy. A Saccharomyces cerevisiae homolog is involved in the import of long-chain fatty acids. Length = 282 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-34
Identities = 48/76 (63%), Positives = 57/76 (75%)
Query: 686 YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVG 745
Y W VLS GEQQRLAFARLLL KP+ V LDE+TSALDE +E LY+ ++ GIT ISVG
Sbjct: 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVG 145
Query: 746 HRRTLYDFHKRVLRIS 761
HR +L+ FH RVL +
Sbjct: 146 HRPSLWKFHDRVLDLD 161
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-29
Identities = 46/125 (36%), Positives = 63/125 (50%), Gaps = 36/125 (28%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
+E+L+L TP + L++DLS I + LL+ GPSG+GK+SL RA+AGLW G G+I
Sbjct: 3 LENLSLATPDGR-VLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMP 61
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP 620
+ FLPQRPY+ LG+LR+QLIYP
Sbjct: 62 EG----------------------------------EDLLFLPQRPYLPLGTLREQLIYP 87
Query: 621 TWTEE 625
W +
Sbjct: 88 -WDDV 91
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 6e-28
Identities = 112/502 (22%), Positives = 197/502 (39%), Gaps = 115/502 (22%)
Query: 266 FTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNF 325
TG+ L+ + L A + L +++ L +++L AI + + L+
Sbjct: 267 LTGSILTLIIDLLFALIFLA----VMFLYSWKLTLIVLA------AIPLNVLITLIFQPL 316
Query: 326 LQEKKEADFRYGLVRVRENAESIAFYAG-EDNEMQLLLQRFRSAFEN-LTRLLISSRNLE 383
L+ K + + + G E + RFRS ++N L + + E
Sbjct: 317 LRRKTRKLIEESAEQ---QSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTE 373
Query: 384 FFTSGYRYLIQILPA-AVVAPMYFSGKIEFGVINQSVS-----AFNHILGDFSL----IV 433
+ +L + V ++F V+ ++ AFN + G F +
Sbjct: 374 KLALILNTIKSLLQQLSSVLILWFGA---ILVLEGELTLGQLVAFNMLAGYFISPITRLS 430
Query: 434 YQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPE 493
+ ++RL D+LD+ + + L + K G +
Sbjct: 431 QLWTDFQQAKVALERL---GDILDTPPEQEGDKTLIHL------------PKLQGEIE-- 473
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553
E+++ + ++ DLSL I E + ++G SGSGK++LL+ + GL+
Sbjct: 474 -------FENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ 526
Query: 554 RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
+G+I + ++N S+ R V ++ Q P++ GS+
Sbjct: 527 QGRILL--------------------DGVDLNDIDLASLRRQ---VGYVLQDPFLFSGSI 563
Query: 614 RQQLI--YPTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670
R+ + P T EE+ +AA+ AG + I+ L
Sbjct: 564 RENIALGNPEATDEEII---EAAQLAGA----------------------HEFIENL--- 595
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
+GY P E + LS G++QRLA AR LLSKP+I+LLDE+TSALD EA +
Sbjct: 596 PMGYDTPVG-------EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAII 648
Query: 731 YEQIEA--AGITYISVGHRRTL 750
+ + G T I + HR +
Sbjct: 649 LQNLLQILQGRTVIIIAHRLST 670
|
Length = 709 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 66/254 (25%), Positives = 105/254 (41%), Gaps = 69/254 (27%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
+++L+ P + D+SL I + E +L++GP+GSGK++LLR + GL G++
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV- 60
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN--SRGVFFLPQRPYMVLGSLRQQLI 618
+G+ ++ R V + Q P Q
Sbjct: 61 ------------------------DGKDLTKLSLKELRRKVGLVFQNP-------DDQFF 89
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV-KLGYILP 677
PT EEV A LEN+G +++ + +E+ +L +
Sbjct: 90 GPTVEEEV------------------AFGLENLGL-----PEEEIEERVEEALELVGLEG 126
Query: 678 RLN-SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735
+ S T LS G++QR+A A +L P I+LLDE T+ LD A L E ++
Sbjct: 127 LRDRSPFT-------LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 736 --AAGITYISVGHR 747
A G T I V H
Sbjct: 180 LKAEGKTIIIVTHD 193
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-23
Identities = 84/409 (20%), Positives = 157/409 (38%), Gaps = 90/409 (22%)
Query: 362 LQRFRSAFENLTRLLISSRNLEF-FTSGYRYLIQILPAAVVAPM--YFSGKIEFGVINQS 418
+R+A E + ++ + FT ++ ++ +V + + + ++ G + Q
Sbjct: 217 EDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQP 276
Query: 419 VSAFNHILGDFSLIVYQFQAISAFSAV-IDRLGEFDDVLDSSSSKN--LSEPLEKICLTY 475
+A L++ F A+ AF + V+ S+ N L + E
Sbjct: 277 GAAL------ALLVI--FAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDE 328
Query: 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPS 535
+ + L++ +++ P + +++ +L + + E + ++G S
Sbjct: 329 ---------------QTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRS 373
Query: 536 GSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595
GSGK++LL+ +AG W +G IT + V+ ++ Q L +++
Sbjct: 374 GSGKSTLLQLLAGAWDPQQGSITL------------NGVEIASLDEQ----ALRETIS-- 415
Query: 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655
L QR ++ G+LR L A A
Sbjct: 416 -----VLTQRVHLFSGTLRDNLRL------------ANPDA------------------- 439
Query: 656 SKPSTDDLIKALEDVKLG-YILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIV 713
S ++L AL+ V L + + L+T E LS GE++RLA AR LL +
Sbjct: 440 ---SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 714 LLDESTSALDEANEAHLYEQIE--AAGITYISVGHRRTLYDFHKRVLRI 760
LLDE T LD E + + A G T + V HR + R++ +
Sbjct: 497 LLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVL 545
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-23
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 61/262 (23%)
Query: 489 ALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
A + + +E+L+ + P K + DL+L I + ++G SG+GK++LL + G
Sbjct: 311 AEVANEPPIEISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLG 369
Query: 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM 608
+ +G+I + +D +++ + +++ ++ Q PY+
Sbjct: 370 FLAPTQGEIRV------------NGIDLRDLSPEAWRKQIS-----------WVSQNPYL 406
Query: 609 VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668
G++R EN+ S +++I AL+
Sbjct: 407 FAGTIR----------------------------------ENILLARPDASDEEIIAALD 432
Query: 669 DVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727
L +P+ + LDT E + LS G+ QRLA AR LLS ++LLDE T+ LD E
Sbjct: 433 QAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492
Query: 728 AHLYEQIE--AAGITYISVGHR 747
+ + ++ A T + + HR
Sbjct: 493 QIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 7e-23
Identities = 112/608 (18%), Positives = 211/608 (34%), Gaps = 115/608 (18%)
Query: 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRD 215
L L + +S+ L +AL D + + LL L G L+
Sbjct: 15 LLLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQS 73
Query: 216 YARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQ-------RIVDDLSSFTG 268
Y L + + L+ F K+ + R+ +D+ + +
Sbjct: 74 YLGSRLGQK---------IVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSN 124
Query: 269 TALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQE 328
+ + +F + + LI +L+ + L ++LL+ + L + L+
Sbjct: 125 LVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVR 184
Query: 329 KKEADFRYGLVRVRENAESIAF---YAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFF 385
+ + R+ E+ I + ED E++ + R L
Sbjct: 185 EALGEL---NARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPL 241
Query: 386 TSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445
L +L A+ + SG + G + + +L + + SA
Sbjct: 242 MLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAA 301
Query: 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLT 505
+RL E L E E + + + ++ E+++
Sbjct: 302 AERLFEL-----------LDEEPEVE---------------DPPDPLKDTIGSIEFENVS 335
Query: 506 LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565
P K L +D+S I E + ++GPSGSGK++L++ + L+ G+I
Sbjct: 336 FSYPGKKPVL-KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI------ 388
Query: 566 ETDAHTSDVDSLEVNSQNMNGELTRSMNRNS--RGVFFLPQRPYMVLGSLRQQLIYPTWT 623
+G R ++ +S + + + Q P + G++R
Sbjct: 389 -------------------DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR--------- 420
Query: 624 EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL-GYILPRLNSL 682
EN+ + +++ +AL+ +I +
Sbjct: 421 -------------------------ENIALGRPDATDEEIEEALKLANAHEFIANLPDGY 455
Query: 683 DTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGI 739
DT E LS G++QRLA AR LL P I++LDE+TSALD EA + + ++ G
Sbjct: 456 DTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGR 515
Query: 740 TYISVGHR 747
T + + HR
Sbjct: 516 TTLIIAHR 523
|
Length = 567 |
| >gnl|CDD|224056 COG1133, SbmA, ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 5e-22
Identities = 89/375 (23%), Positives = 150/375 (40%), Gaps = 71/375 (18%)
Query: 133 LFRRFWKVAAP----YWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFY----NA 184
LF FW + +P YW + L A + +T+ +SV N FY NA
Sbjct: 69 LFAAFWFIYSPHRWQYW-------SILGTALIIFVTYFLVQVSVAVNAWYGPFYDLIQNA 121
Query: 185 LADKDQ---EQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQ 241
L+ + QF + +LG + VL ++ RWR+ M +YYM + K +
Sbjct: 122 LSSPPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEYYMANWQKLR 181
Query: 242 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYG-------- 293
I+ QR+ +D F+ T + ++ NA + LI+F +L+
Sbjct: 182 H---------IEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSEL 232
Query: 294 -----IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESI 348
I L +V+S+ GT + +G L L F ++ EA +R LV ++A+
Sbjct: 233 PIIGHIPHALVWAAIVWSLFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHAD-- 290
Query: 349 AFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY----RYL----IQILPAAV 400
A +L F + +N RL +F Y R L I +
Sbjct: 291 --RATPPTVREL----FSNVRKNYFRL--------YFHYMYFNIARILYLQVDNIFGLLI 336
Query: 401 VAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSS 460
+ P +GKI G++ Q + F + G F ++ + I ++ RL F+ LD
Sbjct: 337 LFPSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEAALD--- 393
Query: 461 SKNLSEPLEKICLTY 475
+PL+++ Y
Sbjct: 394 ----GKPLQEVDHRY 404
|
Length = 405 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 2e-21
Identities = 108/473 (22%), Positives = 179/473 (37%), Gaps = 111/473 (23%)
Query: 297 PLFVVLL--------VYSIGGTAI--SIYLGKGLVTLNFLQEKKEADFRYG--LVRVREN 344
P+++++ + ++GG + + L T L+E EA R N
Sbjct: 130 PIYLLVCFLLHPWIGILALGGAVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRN 189
Query: 345 AESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRN--LEFFTSGYRYLIQILPAAVVA 402
AE I G + RF S + + S R L + +R ++Q L + A
Sbjct: 190 AEVIE-AMGMMGNLTKRWGRFHSKYLSAQSA-ASDRAGMLSNLSKYFRIVLQSLVLGLGA 247
Query: 403 PMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK 462
+ G+I G++ L + ++ S RL E L + S+
Sbjct: 248 YLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNEL---LANYPSR 304
Query: 463 NLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLV 522
+ + PL PE + L +E++T+ P K +R +S
Sbjct: 305 DPAMPL-----------------------PE-PEGHLSVENVTIVPPGGKKPTLRGISFS 340
Query: 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582
+ E L ++GPSGSGK++L R + G+W G + D ++
Sbjct: 341 LQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL---------------DGADLK-- 383
Query: 583 NMNGELTRSMNRNSRG--VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS--DAAKSAGL 638
+R + G + +LPQ + G++ + + + E P +AAK AG+
Sbjct: 384 --------QWDRETFGKHIGYLPQDVELFPGTVAENI--ARFGENADPEKIIEAAKLAGV 433
Query: 639 VPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQ 697
+LI L D GY DT + LS G++
Sbjct: 434 ----------------------HELILRLPD---GY--------DTVIGPGGATLSGGQR 460
Query: 698 QRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
QR+A AR L P++V+LDE S LDE E L ++A GIT + + HR
Sbjct: 461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHR 513
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 7e-21
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 67/267 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ +++ P + + ++SL I E + ++G GSGK++LL+ +AGL+ G +
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+ TD D L R + ++PQ + G+LR +
Sbjct: 63 L-----DGTDIRQLDPADL------------------RRNIGYVPQDVTLFYGTLRDNI- 98
Query: 619 YPTWTEEVKPASD-----AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLG 673
T A D AA+ AG+ F + L D+++G
Sbjct: 99 ----TLGAPLADDERILRAAELAGVTDF------------------VNKHPNGL-DLQIG 135
Query: 674 YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733
E LS G++Q +A AR LL+ P I+LLDE TSA+D +E L E+
Sbjct: 136 -------------ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182
Query: 734 IEA--AGITYISVGHRRTLYDFHKRVL 758
+ T I + HR +L D R++
Sbjct: 183 LRQLLGDKTLIIITHRPSLLDLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-20
Identities = 71/283 (25%), Positives = 114/283 (40%), Gaps = 70/283 (24%)
Query: 490 LSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
L + Q ++ +++ P + + ++SL I E + ++G GSGK++LL+ + GL
Sbjct: 455 LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL 514
Query: 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609
+ G + + D D L R + ++PQ P +
Sbjct: 515 YQPTEGSVLL-----DGVDIRQIDPADL------------------RRNIGYVPQDPRLF 551
Query: 610 LGSLRQQLIYPTWTEEVKPASD-----AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI 664
G+LR + A D AA+ AG+ F+ P D+
Sbjct: 552 YGTLRDNIAL-----GAPYADDEEILRAAELAGVTEFV------------RRHPDGLDMQ 594
Query: 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
I R SL S G++Q +A AR LL P I+LLDE TSA+D
Sbjct: 595 ----------IGERGRSL----------SGGQRQAVALARALLRDPPILLLDEPTSAMDN 634
Query: 725 ANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765
+E ++++ AG T + V HR +L D V RI +D
Sbjct: 635 RSEERFKDRLKRWLAGKTLVLVTHRTSLLD---LVDRIIVMDN 674
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 68/275 (24%), Positives = 106/275 (38%), Gaps = 73/275 (26%)
Query: 499 LDIEDLTL--KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
+++++L+ K ++ +SL I + E + ++GPSGSGK++LL + GL G+
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
+ + TD EL R+ + F+ Q
Sbjct: 61 VRV-----DGTDISKLS-----------EKELAAFRRRH---IGFVFQSFN--------- 92
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDV 670
L+P LT+ LENV K + + LE V
Sbjct: 93 ---------------------LLPDLTA---LENVELPLLLAGVPKKERRERAEELLERV 128
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH- 729
LG L S LS G+QQR+A AR L + P+I+L DE T LD
Sbjct: 129 GLGDRLNHY---------PSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 730 ---LYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761
L E + AG T + V H L ++ R++ +
Sbjct: 180 MELLRELNKEAGTTIVVVTHDPELAEYADRIIELR 214
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 1e-20
Identities = 83/316 (26%), Positives = 125/316 (39%), Gaps = 74/316 (23%)
Query: 436 FQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKS 495
F+A +A A +L + + E L+ + S P + GA+ K
Sbjct: 284 FEAFAALPAAAQQLTRVRAAAE-----RIVEVLDAAGPV--AEGSAPAA---GAVGLGKP 333
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
L++ DL+ P + L +SL + E + ++GPSGSGK++LL +AGL +G
Sbjct: 334 T--LELRDLSAGYPGAPPVL-DGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQG 390
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
++T S +D EV R V Q ++ ++R+
Sbjct: 391 EVTL-------DGVPVSSLDQDEV----------------RRRVSVCAQDAHLFDTTVRE 427
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
L + R + + ++L ALE V L
Sbjct: 428 NLR--------------------------------LARPDA--TDEELWAALERVGLADW 453
Query: 676 LPRLNS-LDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733
L L LDT E + LS GE+QRLA AR LL+ I+LLDE T LD L E
Sbjct: 454 LRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 734 IEAA--GITYISVGHR 747
+ AA G T + + H
Sbjct: 514 LLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 4e-20
Identities = 64/240 (26%), Positives = 95/240 (39%), Gaps = 63/240 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+R +S + E + ++GPSG+GK++LL + G G I V DA D D
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA--VNGVPLADA---DAD 392
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
S + ++PQ P++ G++ + + ASDA
Sbjct: 393 SWR------------------DQIAWVPQHPFLFAGTIAENIRLAR-----PDASDAE-- 427
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE---DVKLGYILPRLNSLDTTYEWSSVL 692
+ LE G D+ + AL D +G E + L
Sbjct: 428 --------IREALERAG-------LDEFVAALPQGLDTPIG-------------EGGAGL 459
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHRRTL 750
S G+ QRLA AR L ++LLDE T+ LD EA + E + A G T + V HR L
Sbjct: 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 5e-20
Identities = 64/254 (25%), Positives = 95/254 (37%), Gaps = 70/254 (27%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+D++L I E + ++GPSGSGK++LL + GL G++
Sbjct: 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLI----------------- 64
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
NG+ ++ R + G + Q
Sbjct: 65 --------NGKDLTKLSEKELAKL----RRKKI-GFVFQNF------------------- 92
Query: 637 GLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
L+P LT LENV KS+ + LE + L L + S
Sbjct: 93 NLLPDLTV---LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRL--------LKKKPS 141
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN----EAHLYEQIEAAGITYISVGH 746
LS G+QQR+A AR L++ P+I+L DE T LD L E + G T I V H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 747 RRTLYDFHKRVLRI 760
L + RV+ +
Sbjct: 202 DPELAKYADRVIEL 215
|
Length = 226 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 8e-20
Identities = 132/582 (22%), Positives = 204/582 (35%), Gaps = 144/582 (24%)
Query: 198 LYYLGAFAGGIPFF-VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPD 256
L L A G+ F L D R + +R + +R L F S ++
Sbjct: 62 LVMLTVLALGLYAFQGLLDAIRSRVLVRIGERL-----DRQLNGPVFAASFSAPLLRRGS 116
Query: 257 Q------RIVDDLSSF-TGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGG 309
R +D + F TGT L+ F+A + + +++ +P L ++ ++ G
Sbjct: 117 GDGLQPLRDLDQVRQFLTGTGLT---AFFDAPWMPL-YLAVIFLFHPWLGLI----ALAG 168
Query: 310 TAISIYLGKGLVTLNFLQEK------KEADFRYGLVRV-----RENAESIAFYAGEDNEM 358
I LV L L E+ KEA NAE I G +
Sbjct: 169 AII-------LVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIE-AMGMLGNL 220
Query: 359 QLLLQRFRSAFENLTRLLISSRNLEF--FTSGYRYLIQILPAAVVAPMYFSGKIEFGVIN 416
RF +A+ + S RN F + R +Q + A + G+I G++
Sbjct: 221 AKRWGRFNAAYLSAQERA-SDRNGAFGALSRALRMALQSAVLGLGAWLVIKGEITPGMMI 279
Query: 417 QSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYC 476
L L + ++ A RL E L + PL
Sbjct: 280 AGSILSGRALAPIDLAIANWKQFVAARQSYKRLNEL---LAELPAAAERMPL-------- 328
Query: 477 SVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSG 536
P Q L +E LT P K +++ +S + E L ++GPSG
Sbjct: 329 ---------------PA-PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSG 372
Query: 537 SGKTSLLRAMAGLWSDGRGKI-----TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591
SGK++L R + G+W G + DRE+ H
Sbjct: 373 SGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH--------------------- 411
Query: 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS--DAAKSAGLVPFLTSAQKLE 649
+ +LPQ + G++ + + + EE P +AA+ AG+
Sbjct: 412 -------IGYLPQDVELFDGTIAENI--ARFGEEADPEKVIEAARLAGV----------- 451
Query: 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLS 708
+LI L GY DT E + LS G++QR+A AR L
Sbjct: 452 -----------HELILRLPQ---GY--------DTRIGEGGATLSGGQRQRIALARALYG 489
Query: 709 KPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
P +V+LDE S LD EA L +A G T + + HR
Sbjct: 490 DPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHR 531
|
Length = 580 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 9e-20
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 56/246 (22%)
Query: 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566
KT ++D++L IN+ E + ++GPSG+GK++LLR++ GL G+I F
Sbjct: 11 KTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQIT- 69
Query: 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV 626
+ G+ R + R+ + + Q+ +V R ++ E V
Sbjct: 70 ----------------KLKGKELRKLRRD---IGMIFQQFNLV---PRLSVL-----ENV 102
Query: 627 KPASDAAKS--AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684
S L + K +AL+ L R+ LD
Sbjct: 103 LLGRLGYTSTWRSLFGLFSKEDKA----------------QALD------ALERVGILDK 140
Query: 685 TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGIT 740
Y+ +S LS G+QQR+A AR L+ +P+I+L DE ++LD + + + + + GIT
Sbjct: 141 AYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGIT 200
Query: 741 YISVGH 746
I H
Sbjct: 201 VIVNLH 206
|
Length = 258 |
| >gnl|CDD|171443 PRK12369, PRK12369, putative transporter; Reviewed | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 7e-19
Identities = 80/320 (25%), Positives = 132/320 (41%), Gaps = 42/320 (13%)
Query: 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF----- 211
L + + ++V N DFY+ L Q+ + + G F I F
Sbjct: 19 LFFILLSLWYQVSLNVAINEWYGDFYDLL----QKAKIEPNNHTAGDFWASILSFLAIAM 74
Query: 212 ------VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSS 265
+ DY A RWR MT Y++ + + I+ QRI +D
Sbjct: 75 PYVLIATVVDYFASHYAFRWREAMTFSYLKFWRNKRD--------NIEGSSQRIQEDTYR 126
Query: 266 FTGTALSFSLTLFNAAVDLISFSNILYGI-----------YPPLFV-VLLVYSIGGTAIS 313
F S L+ A + LI+F IL+G+ P V + L+ S+GG IS
Sbjct: 127 FAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIALLISLGGLVIS 186
Query: 314 IYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLT 373
++G L L + +K EA FR LV ++ YA + ++L F N
Sbjct: 187 WFVGIKLPGLEYNNQKVEAAFRKELVYAEDD---KKNYAKPETLIEL----FTGLRFNYF 239
Query: 374 RLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIV 433
RL + + + ++ I+P ++AP F+G I GV+ Q +AF+ + FS+ +
Sbjct: 240 RLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFI 299
Query: 434 YQFQAISAFSAVIDRLGEFD 453
+ I+ ++ RL EF+
Sbjct: 300 RNWTTITELRSIYKRLKEFE 319
|
Length = 326 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-18
Identities = 72/264 (27%), Positives = 100/264 (37%), Gaps = 88/264 (33%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
L+I +++ A V D+SL I + E + ++GPSG GKT+LLR +AG G+I
Sbjct: 5 ALEIRNVSKSFGDFTA--VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
+ D+ + + + MV S
Sbjct: 63 LLDGE----------DITDVPPEKRPIG----------------------MVFQSYA--- 87
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV--GRKSSKPSTDDLIK-----ALEDV 670
L P +T ENV G K K IK ALE V
Sbjct: 88 --------------------LFPHMTVE---ENVAFGLKVRKKLKKAEIKARVEEALELV 124
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
L R LS G+QQR+A AR L+ +P+++LLDE SALD A L
Sbjct: 125 GLEGFADR---------KPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALD----AKL 171
Query: 731 YEQI--------EAAGITYISVGH 746
EQ+ GIT++ V H
Sbjct: 172 REQMRKELKELQRELGITFVYVTH 195
|
Length = 352 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 3e-18
Identities = 69/261 (26%), Positives = 109/261 (41%), Gaps = 69/261 (26%)
Query: 498 LLDIEDLTLKTPTSKA--TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
LL++++L++ PT + D+S I + E L ++G SGSGK++L RA+ GL G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLG--- 611
I F KD +L+R + + R + Q P L
Sbjct: 61 SIIFDGKDLL---------------------KLSRRLRKIRRKEIQMVFQDPMSSLNPRM 99
Query: 612 SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671
++ +Q+ P L KL SK L V
Sbjct: 100 TIGEQIAEP---------------------LRIHGKL-------SKKEARKEAVLLLLVG 131
Query: 672 LGYILP--RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
+G LP LN +E LS G++QR+A AR L P++++ DE TSALD + +A
Sbjct: 132 VG--LPEEVLNRY--PHE----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQ 183
Query: 730 LYEQI----EAAGITYISVGH 746
+ + + E G+T + + H
Sbjct: 184 ILDLLKKLQEELGLTLLFITH 204
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 3e-18
Identities = 62/264 (23%), Positives = 105/264 (39%), Gaps = 81/264 (30%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
+L++E+L+ ++ DLS I + E ++GP+GSGK++LL+ +AGL G+
Sbjct: 1 MMLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG--VFFLPQRPYMVLGSLR 614
+ +G+ S++ + ++PQ P
Sbjct: 59 VLL-------------------------DGKDIASLSPKELAKKLAYVPQSPS------- 86
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS-----SKPSTDDL---IKA 666
PF + +L +GR +PS +D +A
Sbjct: 87 ------------------------APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
LE + L ++ R LS GE+QR+ AR L + I+LLDE TS LD A+
Sbjct: 123 LELLGLEHLADRP--------VDE-LSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173
Query: 727 EAHLYEQI----EAAGITYISVGH 746
+ + E + G+T + V H
Sbjct: 174 QIEVLELLRDLNREKGLTVVMVLH 197
|
Length = 258 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 82.9 bits (206), Expect = 7e-18
Identities = 63/263 (23%), Positives = 117/263 (44%), Gaps = 65/263 (24%)
Query: 499 LDIEDLTLK-TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
++ ++++L+ P L +++S I E + ++G +GSGK+SLL A+ L G I
Sbjct: 3 IEFKNVSLRYRPNLPPVL-KNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI 61
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
+D ++++ ++ +L ++ +PQ P + G++R L
Sbjct: 62 L---------------IDGVDISKIGLH-DLRSRIS-------IIPQDPVLFSGTIRSNL 98
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL-GYIL 676
D PF + S ++L +ALE V L ++
Sbjct: 99 -------------D--------PF--------------GEYSDEELWQALERVGLKEFVE 123
Query: 677 PRLNSLDTTYEWS-SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI- 734
LDT E LS+G++Q L AR LL K +I++LDE+T+++D +A + + I
Sbjct: 124 SLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183
Query: 735 -EAAGITYISVGHR-RTLYDFHK 755
T +++ HR T+ D +
Sbjct: 184 EAFKDCTVLTIAHRLDTIIDSDR 206
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-18
Identities = 76/271 (28%), Positives = 116/271 (42%), Gaps = 65/271 (23%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
++++ E+L+ + P KA L +D+SL I + E +L++GP+GSGK++LL+ + GL G+
Sbjct: 2 RMIEAENLSFRYPGRKAAL-KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
+ D TS SL Q V + Q P Q
Sbjct: 61 VLVDGLD-------TSSEKSLLELRQK---------------VGLVFQNP-------DDQ 91
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK-ALEDVKLGYI 675
L PT +EV A LEN + ++ + ALE V L +
Sbjct: 92 LFGPTVEDEV------------------AFGLEN--LGLPREEIEERVAEALELVGLEEL 131
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI- 734
L R LS G++QR+A A +L P+I+LLDE T+ LD L E +
Sbjct: 132 LDR---------PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 735 ---EAAGITYISVGHRR-TLYDFHKRVLRIS 761
E G T I V H + ++ RV+ +
Sbjct: 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLD 213
|
Length = 235 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 1e-17
Identities = 55/241 (22%), Positives = 95/241 (39%), Gaps = 67/241 (27%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
+++++ +LT K K T + +S + E ++GP+G+GKT+LL+ +AGL G+
Sbjct: 3 EVIEVRNLTKKYGGDK-TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGE 61
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
I V ++ E + R + ++PQ P
Sbjct: 62 IL--------------------VLGYDVVKEPAKVRRR----IGYVPQEPS--------- 88
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR---KSSKPSTDDLIKALEDVKLG 673
L P LT + LE R S + + + + + LE L
Sbjct: 89 ---------------------LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLE 127
Query: 674 YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733
+ LS G +QRL+ A LL P++++LDE TS LD + ++E
Sbjct: 128 DKANKK---------VRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 734 I 734
+
Sbjct: 179 L 179
|
Length = 293 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 2e-17
Identities = 72/285 (25%), Positives = 114/285 (40%), Gaps = 77/285 (27%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR---- 554
+++ DL + A ++D+SL I + E ++GPSG GK++LLR + L
Sbjct: 1 IELRDLNVYYGDKHA--LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 555 -GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
G++ KD + DVD LE+ R G+ F Q+P GS+
Sbjct: 59 EGEVLLDGKDIYD-----LDVDVLEL--------------RRRVGMVF--QKPNPFPGSI 97
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI-KALEDVKL 672
+ Y + K D+ + +AL L
Sbjct: 98 YDNVAYGLR----------------------------LHGIKLKEELDERVEEALRKAAL 129
Query: 673 -GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731
+ RL++L LS G+QQRL AR L ++P+++LLDE TSALD + A +
Sbjct: 130 WDEVKDRLHALG--------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIE 181
Query: 732 EQIE--AAGITYISVGH---------RRTLYDFHKRVLRISTVDQ 765
E I T + V H RT + + R++ +Q
Sbjct: 182 ELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 2e-17
Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 63/249 (25%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
+EDLT+ ++ D+S + E L ++GP+G+GK++LL+A+ GL G I
Sbjct: 2 VEDLTVSY--GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV- 58
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP 620
+ + + + + ++PQR + R +P
Sbjct: 59 ---------------------------FGKPLEKERKRIGYVPQRRSI----DRD---FP 84
Query: 621 TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680
+V GL + R+ SK + +ALE V L + R
Sbjct: 85 ISVRDVV-------LMGLYGHK-------GLFRRLSKADKAKVDEALERVGLSELADR-- 128
Query: 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAA 737
+ LS G+QQR+ AR L+ P ++LLDE + +D + +YE ++
Sbjct: 129 QIGE-------LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181
Query: 738 GITYISVGH 746
G+T + V H
Sbjct: 182 GMTILVVTH 190
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|147901 pfam05992, SbmA_BacA, SbmA/BacA-like family | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-17
Identities = 72/324 (22%), Positives = 123/324 (37%), Gaps = 45/324 (13%)
Query: 158 AAVFALTFATTGISVGFNFLGRDFY----NALADKDQ---EQFAKQLLYYLGAFAGGIPF 210
A + + + + + V N FY AL + +F LL + G +
Sbjct: 13 ALILFVLWFSVQVDVAINAWYGPFYDLIQKALGSPNAVTIGEFYAGLLDFSGIAFVYVVI 72
Query: 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTA 270
VL + RWR+ M +YY + K + I+ QR+ +D F
Sbjct: 73 GVLNAFFVSHYIFRWRTAMNEYYTSHWDKLRH---------IEGASQRVQEDTMRFARIM 123
Query: 271 LSFSLTLFNAAVDLISFSNILYG-------------IYPPLFVVLLVYSIGGTAISIYLG 317
++ + + LI+F +L+G I L LV+S+GGT + +G
Sbjct: 124 EDLGVSFVRSIMTLIAFLPVLFGLSKHVPVLPIFGDIPHGLVWAALVWSLGGTVFLMVVG 183
Query: 318 KGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLI 377
L L F +K EA +R LV GED+ + + + F+N+
Sbjct: 184 IKLPGLEFNNQKVEAAYRKELV------------YGEDDADRATPKTLKELFDNVRHNYF 231
Query: 378 SS-RNLEFFTSG---YRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIV 433
+ +F Y + +AP +GKI GV+ Q +AF + G F ++
Sbjct: 232 RLYFHYLYFNIARIFYLQADNLFGYIFLAPSIVAGKITLGVMQQITNAFGKVRGSFQYLI 291
Query: 434 YQFQAISAFSAVIDRLGEFDDVLD 457
+ I ++ RL F+ +D
Sbjct: 292 NSWTTIVELMSIYKRLRAFESQID 315
|
The Rhizobium meliloti bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homolog of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family. Length = 315 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-17
Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 71/240 (29%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L++E+L+ P K L ++++L IN E + ++GPSG+GK++LLR + L G I
Sbjct: 1 MLEVENLSKVYPNGKQAL-KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
D + G+ R + R +F Q
Sbjct: 60 LLEGTD-----------------ITKLRGKKLRKLRRRIGMIF--------------QHY 88
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV--GRKSSKP---------STDDLIKA 666
L+ LT LENV GR KP S +D +A
Sbjct: 89 -------------------NLIERLTV---LENVLHGRLGYKPTWRSLLGRFSEEDKERA 126
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
L L R+ D Y+ + LS G+QQR+A AR L +P ++L DE ++LD
Sbjct: 127 L------SALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKT 180
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-16
Identities = 58/245 (23%), Positives = 93/245 (37%), Gaps = 78/245 (31%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
LL+IE ++ + + D++L + + E + ++GPSG GK++LLR +AGL G++
Sbjct: 3 LLEIEGVSKSFGGVEV--LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
+ R T P Y+ Q
Sbjct: 61 --LLDGRPVTGPG--------------------------------PDIGYV------FQ- 79
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV-----GRKSSKPSTDDLIK-ALEDVK 671
L+P+LT L+NV R SK + K LE V
Sbjct: 80 -----------------EDALLPWLTV---LDNVALGLELRGKSKAEARERAKELLELVG 119
Query: 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731
L ++ LS G +QR+A AR L ++P+++LLDE ALD L
Sbjct: 120 LA---------GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQ 170
Query: 732 EQIEA 736
+++
Sbjct: 171 DELLR 175
|
Length = 248 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 63/237 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
++D++ I E + ++GP+G+GKT+L+ + + +G+I +D
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQIL---------------ID 63
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY--PTWTEEVKPASDAA 633
+++ ++R R+ GV + Q ++ G++ + + P T+E AA
Sbjct: 64 GIDIRD------ISRKSLRSMIGV--VLQDTFLFSGTIMENIRLGRPNATDEEVIE--AA 113
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVL 692
K AG D I L + GY DT E L
Sbjct: 114 KEAGA----------------------HDFIMKLPN---GY--------DTVLGENGGNL 140
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747
S GE+Q LA AR +L P+I++LDE+TS +D E + E +E G T I + HR
Sbjct: 141 SQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHR 197
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 3e-16
Identities = 69/275 (25%), Positives = 112/275 (40%), Gaps = 74/275 (26%)
Query: 489 ALSPEKSQKLLDIEDLTLKTPTSKATL---------VRDLSLVINEKEHLLVMGPSGSGK 539
P +++ LL + +L+ + + K V D+S + E E L ++G SGSGK
Sbjct: 271 RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGK 330
Query: 540 TSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQN--MNGELTRSMNRNSR 597
++L R +AGL G I F D ++ D ++ L Q + S+N
Sbjct: 331 STLARILAGLLPPSSGSIIF---DGQDLDLTGGELRRLRRRIQMVFQDPY--SSLN---- 381
Query: 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657
P M ++ L P + + A++ V
Sbjct: 382 --------PRM---TVGDILAEPL---------------RIHGGGSGAERRARV------ 409
Query: 658 PSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLD 716
+L LE V L L R +E LS G++QR+A AR L +P++++LD
Sbjct: 410 ---AEL---LELVGLPPEFLDR-----YPHE----LSGGQRQRVAIARALALEPKLLILD 454
Query: 717 ESTSALDEANEAHLYE-----QIEAAGITYISVGH 746
E SALD + +A + Q E G+TY+ + H
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEE-LGLTYLFISH 488
|
Length = 539 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-15
Identities = 59/237 (24%), Positives = 94/237 (39%), Gaps = 63/237 (26%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
LL+++ + +K ++ ++SL + E + + GPSG GK++LL+ +A L S G +
Sbjct: 3 LLELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
F +D S + Q V + Q P + ++ L
Sbjct: 61 LFEGED-------VSTLKPEAYRQQ----------------VSYCAQTPALFGDTVEDNL 97
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
I+P +P AA L S L K + +
Sbjct: 98 IFPWQIRNRRPDRAAAL-----------DLLARFALPDSI-----LTKNITE-------- 133
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS GE+QR+A R L P+I+LLDE TSALDE+N+ ++ E I
Sbjct: 134 --------------LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 70/263 (26%), Positives = 113/263 (42%), Gaps = 82/263 (31%)
Query: 500 DIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTS----LLRAMAGLWSDGR 554
+ ++++ + P+ + + LSL I + + ++G SG GK++ L R
Sbjct: 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLER---------- 51
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN----RNSRGVFFLPQRPYMVL 610
FY D S E+ ++G R +N R+ G+ + Q P +
Sbjct: 52 ----FY------------DPTSGEIL---LDGVDIRDLNLRWLRSQIGL--VSQEPVLFD 90
Query: 611 GSLRQQLIY---PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667
G++ + + Y EEV+ +AAK A + F+ S
Sbjct: 91 GTIAENIRYGKPDATDEEVE---EAAKKANIHDFIMS----------------------- 124
Query: 668 EDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
LP + DT E S LS G++QR+A AR LL P+I+LLDE+TSALD +
Sbjct: 125 --------LP--DGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAES 174
Query: 727 EAHLYEQIEAA--GITYISVGHR 747
E + E ++ A G T I + HR
Sbjct: 175 EKLVQEALDRAMKGRTTIVIAHR 197
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 74/262 (28%), Positives = 112/262 (42%), Gaps = 75/262 (28%)
Query: 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561
E++T + L +D+S I + + ++GPSGSGK+++LR + FY
Sbjct: 4 ENVTFAYDPGRPVL-KDVSFTIPAGKKVAIVGPSGSGKSTILRLL----------FRFY- 51
Query: 562 KDREETDAHTSDVDS--LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL--GSLRQQL 617
DV S + ++ Q++ E+T R + GV +PQ VL ++ +
Sbjct: 52 -----------DVSSGSILIDGQDIR-EVTLDSLRRAIGV--VPQD--TVLFNDTIGYNI 95
Query: 618 IYPTWT---EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
Y EEV +AAK+A + D I D GY
Sbjct: 96 RYGRPDATDEEVI---EAAKAAQI----------------------HDKIMRFPD---GY 127
Query: 675 ILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733
DT E LS GE+QR+A AR +L P I+LLDE+TSALD E +
Sbjct: 128 --------DTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAA 179
Query: 734 IE--AAGITYISVGHR-RTLYD 752
+ + G T I + HR T+ +
Sbjct: 180 LRDVSKGRTTIVIAHRLSTIVN 201
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 8e-15
Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747
+LS G++QR+A AR LL P I++LDE+TSALD EA + E + A G T I + HR
Sbjct: 96 ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHR 154
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-14
Identities = 55/214 (25%), Positives = 84/214 (39%), Gaps = 70/214 (32%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ + L + + E ++++GPSGSGK++LLR + L G I D + +++
Sbjct: 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII---DGLKLTDDKKNINE 73
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
L R G+ F QQ
Sbjct: 74 L----------------RQKVGMVF-------------QQF------------------- 85
Query: 637 GLVPFLTSAQKLENVG------RKSSKPSTDDL-IKALEDVKLGYILPRLNSLDTTYEWS 689
L P LT LEN+ + SK ++ ++ LE V L D +
Sbjct: 86 NLFPHLTV---LENITLAPIKVKGMSKAEAEERALELLEKVGL---------ADKADAYP 133
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS G+QQR+A AR L P+++L DE TSALD
Sbjct: 134 AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALD 167
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-14
Identities = 104/396 (26%), Positives = 162/396 (40%), Gaps = 127/396 (32%)
Query: 378 SSRNLEFFTSGYRYLIQILPAAVVAPMYFS----GKIEFGVINQSVSAFNHILGDFSLIV 433
SS LEFF S I I A+VA +YF G++ FG V+ F G F LI+
Sbjct: 249 SSAVLEFFAS-----ISI---ALVA-VYFGFSYLGELNFGHYGTGVTLF---AGFFVLIL 296
Query: 434 ----YQ------------FQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCS 477
YQ QA+ A + L F L++ +
Sbjct: 297 APEFYQPLRDLGTFYHAKAQAVGA----AESLVTF---LETPLAHPQQGE---------- 339
Query: 478 VKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGS 537
K + N ++ ++ EDL + +P K TL L+ + + + ++GPSG+
Sbjct: 340 -KELAS---NDPVT-------IEAEDLEILSPDGK-TLAGPLNFTLPAGQRIALVGPSGA 387
Query: 538 GKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS- 596
GKTSLL A+ G +G SL++N EL R ++ S
Sbjct: 388 GKTSLLNALLGFLP-YQG--------------------SLKINGI----EL-RELDPESW 421
Query: 597 -RGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655
+ + ++ Q P + G+LR +NV +
Sbjct: 422 RKHLSWVGQNPQLPHGTLR----------------------------------DNVLLGN 447
Query: 656 SKPSTDDLIKALEDVKLGYILPRL-NSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIV 713
S + L +ALE+ + LP L LDT + ++ LS+G+ QRLA AR LL Q++
Sbjct: 448 PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507
Query: 714 LLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
LLDE T++LD +E + + + AA T + V H+
Sbjct: 508 LLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQ 543
|
Length = 588 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-14
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 62/262 (23%)
Query: 492 PEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551
Q L + +++ P +++ LSL I E + ++G +G GK++LL+ + W
Sbjct: 332 AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD 391
Query: 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG 611
+G+I +N Q + + + + R + V + QR ++
Sbjct: 392 PQQGEIL--------------------LNGQPIA-DYSEAALRQAISV--VSQRVHLFSA 428
Query: 612 SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD-LIKALEDV 670
+LR L+ AA +A +D+ LI+ L+ V
Sbjct: 429 TLRDNLLL------------AAPNA-----------------------SDEALIEVLQQV 453
Query: 671 KLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
L +L L+ E LS GEQ+RL AR LL ++LLDE T LD E
Sbjct: 454 GLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQ 513
Query: 730 LYEQIE--AAGITYISVGHRRT 749
+ E + A T + + HR T
Sbjct: 514 ILELLAEHAQNKTVLMITHRLT 535
|
Length = 574 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 62/255 (24%), Positives = 93/255 (36%), Gaps = 68/255 (26%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
++ DL+L I + + ++G SGSGK++LL + L G++
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLN------------- 58
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ +N + R LG L Q
Sbjct: 59 ----GQETPPLNSKKASKFRRE-------------KLGYLFQNF---------------- 85
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDD----LIKALEDVKLGYILPRLNSLDT-TYEW 688
L+ T + L+ +G K K S + +ALE V L L YE
Sbjct: 86 ---ALIENETVEENLD-LGLKYKKLSKKEKREKKKEALEKVGLN------LKLKQKIYE- 134
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA---HLYEQIEAAGITYISVG 745
LS GEQQR+A AR +L P ++L DE T +LD N L ++ G T I V
Sbjct: 135 ---LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVT 191
Query: 746 HRRTLYDFHKRVLRI 760
H + RV+ +
Sbjct: 192 HDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 4e-14
Identities = 65/255 (25%), Positives = 106/255 (41%), Gaps = 70/255 (27%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D+SL I ++G SGSGK++L + + G + G+I ++ D HT
Sbjct: 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHT------ 545
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY----PTWTEEVKPASDAA 633
L + +N +LPQ PY+ GS+ + L+ +E+ A + A
Sbjct: 546 ----------LRQFIN-------YLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIA 588
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTY-EWSSV 691
+ IK +E++ LGY T E S
Sbjct: 589 E-----------------------------IKDDIENMPLGY--------QTELSEEGSS 611
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEAAGITYISVGHRRTL 750
+S G++QR+A AR LL+ ++++LDESTS LD E + + T I V HR ++
Sbjct: 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSV 671
Query: 751 YDFHKRVLRISTVDQ 765
K+ +I +D
Sbjct: 672 ---AKQSDKIIVLDH 683
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 64/245 (26%), Positives = 95/245 (38%), Gaps = 77/245 (31%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
V D++L I E E L+++GPSGSGKT+ L+ + L G+I +D SD
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED-------ISD 67
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+D +E LR+++ Y
Sbjct: 68 LDPVE----------------------------------LRRKIGY------------VI 81
Query: 634 KSAGLVPFLTSAQ------KLENVGRKSSKPSTDDLIK--ALEDVKLGYILPRLNSLDTT 685
+ GL P LT A+ KL ++ K D+L+ L+ + P
Sbjct: 82 QQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYP-------- 133
Query: 686 YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITY 741
LS G+QQR+ AR L + P I+L+DE ALD L E+I+ G T
Sbjct: 134 ----HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTI 189
Query: 742 ISVGH 746
+ V H
Sbjct: 190 VFVTH 194
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 62/252 (24%), Positives = 105/252 (41%), Gaps = 59/252 (23%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ +++T + P ++RD+SL I E + ++GPSGSGK++L+ + + G+I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
D H DV + S L R + + Q ++ ++ + +
Sbjct: 61 I--------DGH--DVRDYTLAS------LRRQIG-------LVSQDVFLFNDTVAENIA 97
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
Y + +AA++A + I L + GY
Sbjct: 98 YGRPGATREEVEEAARAANA----------------------HEFIMELPE---GY---- 128
Query: 679 LNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-- 735
DT E LS G++QR+A AR LL P I++LDE+TSALD +E + +E
Sbjct: 129 ----DTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERL 184
Query: 736 AAGITYISVGHR 747
T + HR
Sbjct: 185 MKNRTTFVIAHR 196
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 8e-14
Identities = 62/218 (28%), Positives = 93/218 (42%), Gaps = 68/218 (31%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
++ ++ L I++ E ++++GPSGSGK++LLR + L EE +
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL---------------EEITSGD 57
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631
VD L+VN ++ L R Q MV QQ
Sbjct: 58 LIVDGLKVNDPKVDERLIR-------------QEAGMVF----QQF-------------- 86
Query: 632 AAKSAGLVPFLTSAQKLENVG------RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685
L P LT+ LENV R +SK + + L L ++ +
Sbjct: 87 -----YLFPHLTA---LENVMFGPLRVRGASKEEAEKQAREL--------LAKVGLAERA 130
Query: 686 YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ + S LS G+QQR+A AR L KP+++L DE TSALD
Sbjct: 131 HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALD 168
|
Length = 240 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 59/233 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+++E+L+ P K L +D+SL IN E + ++GPSG+GK++LLR + GL G +
Sbjct: 1 IEVENLSKTYPNGKKAL-KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
D +L R R +G + QQ
Sbjct: 60 IDGTD---------------------INKLKGKALRQLRRQ----------IGMIFQQF- 87
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV-----GRKSSKPSTDDLIKALEDVKLG 673
L+ L+ LENV GR+S+ S L E +
Sbjct: 88 ------------------NLIERLSV---LENVLSGRLGRRSTWRSLFGLFPKEEKQRAL 126
Query: 674 YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
L R+ LD Y+ + LS G+QQR+A AR L+ +P+++L DE ++LD A+
Sbjct: 127 AALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPAS 179
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 1e-13
Identities = 67/255 (26%), Positives = 105/255 (41%), Gaps = 77/255 (30%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
+SL I + E + ++G SGSGK++LL + GL + G++ F
Sbjct: 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF------------------- 64
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ---LIYPTWTEEVKPASDAAKS 635
NG+ ++ N R LR + IY +
Sbjct: 65 ------NGQSLSKLSSNERA-------------KLRNKKLGFIY--------------QF 91
Query: 636 AGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
L+P T+ LENV G+KS K + + + LE V L + R+N
Sbjct: 92 HHLLPDFTA---LENVAMPLLIGKKSVKEAKERAYEMLEKVGLEH---RIN------HRP 139
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
S LS GE+QR+A AR L+++P +VL DE T LD N +++ + +++ V
Sbjct: 140 SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVT 199
Query: 746 HRRTLYDFHKRVLRI 760
H L RVL +
Sbjct: 200 HDLELAKKLDRVLEM 214
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182960 PRK11098, PRK11098, microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 3e-13
Identities = 86/383 (22%), Positives = 145/383 (37%), Gaps = 87/383 (22%)
Query: 133 LFRRFWKVAAP----YWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFY----NA 184
LF FW + +P W + L A + +T+ +SV N FY A
Sbjct: 73 LFAGFWFIYSPHPWQRW-------SILGSALIIFVTWFLVQVSVAVNAWYAPFYDLIQTA 125
Query: 185 LADK---DQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQ 241
L+ QF ++ +LG + VL ++ RWR+ M +YYM +
Sbjct: 126 LSSPGKVTIGQFYSEVGVFLGIALIAVVISVLNNFFVSHYVFRWRTAMNEYYMAHW---- 181
Query: 242 TFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYP----- 296
Q I+ QR+ +D F T + ++ NA + LI+F +L +
Sbjct: 182 -----QKLRHIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPEL 236
Query: 297 --------PLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESI 348
L + +V+S+ GT + +G L L F ++ EA +R LV
Sbjct: 237 PIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELV--------- 287
Query: 349 AFYAGEDNE-------MQLLLQR-----FRSAFE----NLTRLLISSRNLEFFTSGYRYL 392
Y GED+ ++ L FR F N+ R+L Y +
Sbjct: 288 --Y-GEDDADRATPPTVRELFSNVRKNYFRLYFHYMYFNIARIL------------YLQV 332
Query: 393 IQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEF 452
+ ++ P +G I G++ Q + F + G F ++ + I ++ RL F
Sbjct: 333 DNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRSF 392
Query: 453 DDVLDSSSSKNLSEPLEKICLTY 475
+ LD EPL+++ T
Sbjct: 393 EAALD-------GEPLQEVDHTL 408
|
Length = 409 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 58/234 (24%), Positives = 95/234 (40%), Gaps = 78/234 (33%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L++E+L+ K +R +SL + E + ++G +G+GKT+LL+ + GL G+I
Sbjct: 3 MLEVENLSAGY--GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
F + +++ G R G+ ++P+ R+
Sbjct: 61 IF--------------------DGEDITGL--PPHERARLGIAYVPEG--------RR-- 88
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN-----VGRKSSKPSTDDLIKALEDVKL 672
I+P T E EN R+ + DL + E
Sbjct: 89 IFPRLTVE-----------------------ENLLLGAYARRDKEAQERDLEEVYE---- 121
Query: 673 GYILPRL----NSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
+ PRL N T LS GEQQ LA AR L+S+P+++LLDE + L
Sbjct: 122 --LFPRLKERRNQRAGT------LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 167
|
Length = 237 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 5e-13
Identities = 50/243 (20%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 493 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552
E ++ L+++++++++ + ++ DLS +N EH ++GP+G+GKT+LL + G
Sbjct: 26 EINEPLIELKNVSVRR--NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP 83
Query: 553 GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGS 612
G +T + + + EL + + +V
Sbjct: 84 SSGDVTLLGRRFGKGE---------------TIFELRKRIG--------------LVSSE 114
Query: 613 LRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672
L ++ T S S G+ +A+ L LE +
Sbjct: 115 LHERF-RVRETVRDVVLSGFFASIGIYQEDLTAEDLAAA------------QWLLELLGA 161
Query: 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
++ R + S LS GEQ+R+ AR L+ P++++LDE LD L
Sbjct: 162 KHLADRP--------FGS-LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLN 212
Query: 733 QIE 735
++E
Sbjct: 213 RLE 215
|
Length = 257 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 9e-13
Identities = 70/275 (25%), Positives = 101/275 (36%), Gaps = 85/275 (30%)
Query: 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK 562
T+ + ++++ + LV+ E + ++GPSGSGK++LL +AGL
Sbjct: 13 SKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGL------------- 59
Query: 563 DREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTW 622
D S EV + G+ ++ ++R +LR
Sbjct: 60 ---------DDPSSGEV---RLLGQPLHKLDEDAR-------------AALR-------- 86
Query: 623 TEEVKPASDAAKSAGLV-------PFLTSAQKLENVG------RKSSKPSTDDLIKALED 669
A+ G V P LT+ LENV +SS S LE
Sbjct: 87 ----------ARHVGFVFQSFHLIPNLTA---LENVALPLELRGESSADSRAGAKALLEA 133
Query: 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
V LG RL LS GEQQR+A AR +P ++ DE T LD A
Sbjct: 134 VGLGK---RLTHYPAQ------LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDK 184
Query: 730 ----LYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760
L+ G T + V H L R LR+
Sbjct: 185 IADLLFALNRERGTTLVLVTHDPQLAARCDRQLRL 219
|
Length = 228 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 1e-12
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 60/209 (28%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
+ +NE E + G SG+GK++LLR +AGL G I T DS
Sbjct: 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVL---------NGTVLFDS- 64
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+ +N + R + + Q+
Sbjct: 65 ---RKKIN------LPPQQRKIGLVFQQ------------------------------YA 85
Query: 638 LVPFLTSAQKLE-NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
L P L + L + RK ++ + + L+ + L ++L R + + LS GE
Sbjct: 86 LFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNR---------YPAQLSGGE 136
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALDEA 725
+QR+A AR L ++P+++LLDE SALD A
Sbjct: 137 KQRVALARALAAQPELLLLDEPFSALDRA 165
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-12
Identities = 57/250 (22%), Positives = 92/250 (36%), Gaps = 69/250 (27%)
Query: 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
IE+++ ++ DLSL + E + + G +G+GKT+L + +AGL + G I
Sbjct: 1 RIENISFSYKKGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 560 YVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY 619
K + E +S+ V+ + QL
Sbjct: 60 NGKPIK-------------------AKERRKSI--------------GYVMQDVDYQLFT 86
Query: 620 PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRL 679
+ EE+ + ++ E V L+D+ L Y L
Sbjct: 87 DSVREELLLGLKELDA--------GNEQAETV---------------LKDLDL-YALKER 122
Query: 680 NSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE---AHLYEQIEA 736
+ L LS G++QRLA A LLS +++ DE TS LD N L ++ A
Sbjct: 123 HPLS--------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA 174
Query: 737 AGITYISVGH 746
G I + H
Sbjct: 175 QGKAVIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHR 747
+LS G++QRL AR L P+I++LDE S LD E L + I AAG T I + HR
Sbjct: 96 ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHR 155
Query: 748 RTL 750
Sbjct: 156 PET 158
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 2e-12
Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 78/285 (27%)
Query: 488 GALSPEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
G+L+P+ + ++ +++T PT TLV +D+S ++ E ++GPSGSGK++++ +
Sbjct: 1 GSLAPDHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALL 60
Query: 547 AGLWSDGRGKITFYVKDREETDAH-TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605
+ G++ D S + ++S+ V + Q
Sbjct: 61 ENFYQPQGGQVLL--------DGKPISQYEHKYLHSK----------------VSLVGQE 96
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665
P + SL+ + Y GL + E V + K I
Sbjct: 97 PVLFARSLQDNIAY-----------------GL-----QSCSFECVKEAAQKAHAHSFIS 134
Query: 666 ALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
L GY DT E S LS G++QR+A AR L+ PQ+++LDE+TSALD
Sbjct: 135 ELAS---GY--------DTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDA 183
Query: 725 ANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVL----RISTVDQ 765
+E +Q++ A + R VL R+STV++
Sbjct: 184 ESE----QQVQQA----LYDWPERR------TVLVIAHRLSTVER 214
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-12
Identities = 64/244 (26%), Positives = 98/244 (40%), Gaps = 73/244 (29%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L+ +L+++ TL+ D+SL + E + ++GP+G+GK++LLRA++G S G++
Sbjct: 2 MLEARNLSVRL--GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
+ + EL R R V LPQ L
Sbjct: 60 RLNGRPLADWSPA----------------ELARR-----RAV--LPQHS---------SL 87
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
+P EEV + G P S + + + + AL V L ++
Sbjct: 88 SFPFTVEEVV-------AMGRAPHGLSRAEDDAL-----------VAAALAQVDLAHLAG 129
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLL------SKPQIVLLDESTSALDEANEAHLY 731
R Y LS GEQQR+ AR+L P+ +LLDE TSALD L
Sbjct: 130 RD------Y---PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALD------LA 174
Query: 732 EQIE 735
Q
Sbjct: 175 HQHH 178
|
Length = 258 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 80/335 (23%), Positives = 131/335 (39%), Gaps = 85/335 (25%)
Query: 421 AFNHILGDFSL----IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYC 476
AF ++ F +V + ++RL DDVL N +PL +
Sbjct: 414 AFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRL---DDVLR-----NPVDPLLEE----- 460
Query: 477 SVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSG 536
+ G+ + +++ ++T + L+ + SL + + + ++G SG
Sbjct: 461 -----EEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSG 515
Query: 537 SGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS 596
SGK+++ + +AGL+ G+I F RE E+ R + NS
Sbjct: 516 SGKSTIAKLVAGLYQPWSGEILFDGIPRE---------------------EIPREVLANS 554
Query: 597 RGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD---AAKSAGLVPFLTSAQKLENVGR 653
V + Q ++ G++R L W + P +D A K A
Sbjct: 555 --VAMVDQDIFLFEGTVRDNL--TLWDPTI-PDADLVRACKDA----------------- 592
Query: 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQI 712
A+ DV I R D E + LS G++QRL AR L+ P I
Sbjct: 593 ------------AIHDV----ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636
Query: 713 VLLDESTSALDEANEAHLYEQIEAAGITYISVGHR 747
++LDE+TSALD E + + + G T I V HR
Sbjct: 637 LILDEATSALDPETEKIIDDNLRRRGCTCIIVAHR 671
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 4e-12
Identities = 62/253 (24%), Positives = 101/253 (39%), Gaps = 64/253 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ E++T K V +L+L I + E L+++GPSGSGKT+ ++ + L G+I
Sbjct: 1 IEFENVT-KRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL- 617
+D E D EL R + G + QQ+
Sbjct: 60 IDGEDIREQDPV----------------ELRRKI------------------GYVIQQIG 85
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
++P T ++ LVP KL ++ + D+L+ + L
Sbjct: 86 LFPHMT--------VEENIALVP------KLLKWPKEKIRERADELLALVG-------LD 124
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--- 734
D + LS G+QQR+ AR L + P ++L+DE ALD L E+
Sbjct: 125 PAEFAD---RYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 735 -EAAGITYISVGH 746
+ G T + V H
Sbjct: 182 QQELGKTIVFVTH 194
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 61/244 (25%), Positives = 92/244 (37%), Gaps = 81/244 (33%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
++D++L I + E ++++GPSG GK++LLR +AGL G+I + R+ TD
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI--LIDGRDVTDLPPEK-- 74
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
RG+ + Q + A
Sbjct: 75 ---------------------RGIAMVFQ-------------------------NYA--- 85
Query: 636 AGLVPFLTSAQKLENVG-----RKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWS 689
L P +T EN+ R K D +K + + L ++L R
Sbjct: 86 --LYPHMTVY---ENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK---------- 130
Query: 690 SVLSLGEQQR--LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYIS 743
L L QR +A AR L+ KP++ LLDE S LD + +I E G T I
Sbjct: 131 -PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIY 189
Query: 744 VGHR 747
V H
Sbjct: 190 VTHD 193
|
Length = 338 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 6e-12
Identities = 29/73 (39%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA---GITYISVGHR- 747
LS G++QR+A AR LL P ++LLDE TS LD A+ L E + G T I V H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 748 RTLYDFHKRVLRI 760
RV+ +
Sbjct: 141 ELAELAADRVIVL 153
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-12
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
IE+L+ + A + ++SL + E + ++GP+GSGK++LLRA+AGL G+I
Sbjct: 2 IENLSFRYGGRTA--LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 561 VKDREETDAH 570
KD +
Sbjct: 60 GKDIAKLPLE 69
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 6e-12
Identities = 60/214 (28%), Positives = 89/214 (41%), Gaps = 73/214 (34%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D+SL I + + ++GPSGSGKT+LLR +AGL G I F H +DV L
Sbjct: 20 DISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRF----------HGTDVSRL 69
Query: 578 EVNSQNM-----NGELTRSM---NRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPA 629
+ + + L R M + + G+ LP+R +P
Sbjct: 70 HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRE--------------------RPN 109
Query: 630 SDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
+ A K K+ + LE V+L ++ R +
Sbjct: 110 AAAIK-----------AKV---------------TQLLEMVQLAHLADR---------YP 134
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS G++QR+A AR L +PQI+LLDE ALD
Sbjct: 135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-12
Identities = 59/211 (27%), Positives = 87/211 (41%), Gaps = 63/211 (29%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D++L IN E +++ GPSGSGKT+LL + GL S G SL
Sbjct: 23 DINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG--------------------SL 62
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+V Q + G + LR+ + Y ++
Sbjct: 63 KVLGQELYG-----ASEKELV-------------QLRRNIGY------------IFQAHN 92
Query: 638 LVPFLTSAQK----LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
L+ FLT+ Q LE S + + + LE V LG L+ LS
Sbjct: 93 LLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG---DHLDYYPHN------LS 143
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
G++QR+A AR L+ +P++VL DE T+ALD
Sbjct: 144 GGQKQRVAIARALVHRPKLVLADEPTAALDS 174
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 59/235 (25%)
Query: 498 LLDIEDLTL--KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
LL++++L++ T V +S + + E L ++G SGSGK+ L +A+ GL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG--VFFLPQRPYMVLGSL 613
+I + + +++ L+ R RG + + Q P + SL
Sbjct: 61 RIV---------------GGEILFDGKDLL-SLSEKELRKIRGKEIAMIFQDP---MTSL 101
Query: 614 RQQLIYPTWT-----EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668
P T EV + S K + + I+ LE
Sbjct: 102 -----NPVMTIGDQIAEV--------------------LRLHGKGLSKKEAKERAIELLE 136
Query: 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
V + RL S Y LS G +QR+ A L P++++ DE T+ALD
Sbjct: 137 LVGIPDPERRLKS----YPHE--LSGGMRQRVMIAMALALNPKLLIADEPTTALD 185
|
Length = 316 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 67/268 (25%), Positives = 110/268 (41%), Gaps = 58/268 (21%)
Query: 482 PTSKCNGALSPEKSQKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKT 540
P G L+P + L++ +D++ P +++ L+ ++ E + ++GPSGSGK+
Sbjct: 462 PNIPLTGTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKS 521
Query: 541 SLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600
++ + L+ G++ + D H L R V
Sbjct: 522 TVAALLQNLYQPTGGQVLLDGVPLVQYDHH-----YLH------------------RQVA 558
Query: 601 FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660
+ Q P + GS+R+ + Y + AAK+A
Sbjct: 559 LVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAAN----------------------A 596
Query: 661 DDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDEST 719
D I + GY DT E S LS G++QR+A AR L+ KP++++LDE+T
Sbjct: 597 HDFIMEFPN---GY--------DTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEAT 645
Query: 720 SALDEANEAHLYEQIEAAGITYISVGHR 747
SALD E L E A T + + HR
Sbjct: 646 SALDAECEQLLQESRSRASRTVLLIAHR 673
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 2e-11
Identities = 60/226 (26%), Positives = 86/226 (38%), Gaps = 72/226 (31%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
L LS + E L V GP+GSGKT+LLR +AGL
Sbjct: 14 ALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGL------------------------ 49
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVLGSLRQQLIYPTWTEEVKPASDA 632
S + G + L P S+ + L+Y
Sbjct: 50 -------SPPLAGRVL------------LNGGPLDFQRDSIARGLLY------------L 78
Query: 633 AKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSV- 691
+ G+ L+ LEN+ + S + + +AL V L +E V
Sbjct: 79 GHAPGIKTTLSV---LENLRFWHADHSDEQVEEALARVGLN-----------GFEDRPVA 124
Query: 692 -LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736
LS G+Q+R+A ARLLLS + +LDE T+ALD+A A E +
Sbjct: 125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-11
Identities = 52/205 (25%), Positives = 80/205 (39%), Gaps = 61/205 (29%)
Query: 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590
+ GPSGSGKTSL+ +AGL G+I + R DA
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE--LNGRVLVDA--------------------- 65
Query: 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650
+G+F P++ +G + Q A L P T L
Sbjct: 66 -----EKGIFLPPEKRR--IGYVFQD-------------------ARLFPHYTVRGNLRY 99
Query: 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP 710
KS + D L+ L + ++L R LS GE+QR+A R LL+ P
Sbjct: 100 GMWKSMRAQFDQLVALL---GIEHLLDRY---------PGTLSGGEKQRVAIGRALLTAP 147
Query: 711 QIVLLDESTSALDEANEAHLYEQIE 735
+++L+DE ++LD + + +E
Sbjct: 148 ELLLMDEPLASLDLPRKREILPYLE 172
|
Length = 352 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-11
Identities = 61/264 (23%), Positives = 103/264 (39%), Gaps = 70/264 (26%)
Query: 498 LLDIEDLTLK--TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-- 553
LL++E+LT++ T + VRD+S + E L ++G SGSGK++L A+ GL +G
Sbjct: 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGR 64
Query: 554 --RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG--VFFLPQRPYMV 609
G++ R+ L+ R RG + + Q P
Sbjct: 65 ITSGEVIL--DGRDLLG-------------------LSEREMRKLRGKRIAMIFQDPMTS 103
Query: 610 LG---SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666
L ++ Q+ ++A K A + LE VG
Sbjct: 104 LNPVMTIGDQIREALRLHGKGSRAEARKRA--------VELLEQVG-------------- 141
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
L D + P LS G +QR+ A L KP++++ DE T+ALD
Sbjct: 142 LPDPERRDRYPH------------QLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTT 189
Query: 727 EAHLYEQIEAA----GITYISVGH 746
+A + + ++ G+ + + H
Sbjct: 190 QAQILDLLKDLQRELGMAVLFITH 213
|
Length = 539 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 3e-11
Identities = 58/213 (27%), Positives = 83/213 (38%), Gaps = 67/213 (31%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ D+SL I E + ++GPSGSGKT+LLR +AGL G I F
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF---------------- 61
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
GE + R V F+ Q Y
Sbjct: 62 ---------GGEDATDVPVQERNVGFVFQH-------------Y---------------- 83
Query: 636 AGLVPFLTSAQKLENVG-----RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
L +T +NV + S+ + I+A L L +L+ L Y +
Sbjct: 84 -ALFRHMTVF---DNVAFGLRVKPRSERPPEAEIRAKVHELLK--LVQLDWLADRY--PA 135
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G++QR+A AR L +P+++LLDE ALD
Sbjct: 136 QLSGGQRQRVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 3e-11
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA---HLYEQIEAAGITYISVGHR 747
LS GEQQR+A AR +++ P ++L DE T LD L +++ G T I H
Sbjct: 137 QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHD 196
Query: 748 RTLYD-FHKRVLRIST 762
+L D RV+ +
Sbjct: 197 LSLVDRVAHRVIILDD 212
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 68/252 (26%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L +E+L+ K ++++SL + ++ +++GP+GSGK+ LL +AG
Sbjct: 1 LKVENLSKDW---KEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAG---------- 47
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
F D + +NG+ ++ R + ++PQ
Sbjct: 48 FIKPDSGKI---------------LLNGKDITNLPPEKRDISYVPQNYA----------- 81
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
L P +T + + +K + K LE ++ I
Sbjct: 82 -------------------LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL 122
Query: 679 LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA- 737
LN T LS GEQQR+A AR L+ P+I+LLDE SALD + L E+++
Sbjct: 123 LNRKPET------LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIR 176
Query: 738 ---GITYISVGH 746
G+T + V H
Sbjct: 177 KEFGVTVLHVTH 188
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 20/60 (33%), Positives = 39/60 (65%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L++E+++ + P ++ ++R++S I E L ++GPSGSGK++L R + GL G++
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-10
Identities = 62/233 (26%), Positives = 98/233 (42%), Gaps = 57/233 (24%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D++L E E L+++GPSG+GK+SLLR + L E S
Sbjct: 20 DITLDCPEGETLVLLGPSGAGKSSLLRVLNLL----------------EMP------RSG 57
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+N + + +++ + + + L + MV QQ Y W
Sbjct: 58 TLNIAGNHFDFSKTPS--DKAIRDLRRNVGMVF----QQ--YNLW--------------- 94
Query: 638 LVPFLTSAQKLENVGRKSSKPSTDD-LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
P LT + L + S D L +A + +L RL + LS G+
Sbjct: 95 --PHLTVQENLIEAPCRVLGLSKDQALARAEK------LLKRLRLKPYADRYPLHLSGGQ 146
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALD---EANEAHLYEQIEAAGITYISVGH 746
QQR+A AR L+ +PQ++L DE T+ALD A + +++ GIT + V H
Sbjct: 147 QQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTH 199
|
Length = 242 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 68/238 (28%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T + D+S + + E ++GP+G+GKT+ +R + G+ G++ F + A +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF--DGKPLDIAARNR 71
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ L RG++ P M + QL+Y
Sbjct: 72 IGYLP----------------EERGLY-----PKM---KVIDQLVY-------------- 93
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS-LDTTYEWSSVL 692
L L+ + ++ ++ D+ ++ LE + N ++ L
Sbjct: 94 --------LAQ---LKGLKKEEARRRIDEWLERLE------LSEYANKRVEE-------L 129
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI---EAAGITYISVGHR 747
S G QQ++ F ++ P++++LDE S LD N L + I AG T I H+
Sbjct: 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 1e-10
Identities = 53/227 (23%), Positives = 87/227 (38%), Gaps = 67/227 (29%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L +E+LT + +A + +SL + + L+ GP+G+GKT+L+R +A L G I
Sbjct: 1 LQLENLTKRYGKKRA--LDGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLGSLRQQL 617
+G+ + R +LPQ
Sbjct: 58 I-------------------------DGQDVLKQPQKLRRRIGYLPQEF----------G 82
Query: 618 IYPTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYIL 676
+YP +T E FL L+ + SK + + LE V LG
Sbjct: 83 VYPNFTVRE---------------FLDYIAWLKGI---PSKEVKARVDEVLELVNLG--- 121
Query: 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
D + LS G ++R+ A+ L+ P I+++DE T+ LD
Sbjct: 122 ------DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 61/226 (26%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L++ DLT SK VRD+S E E ++G +G+GKT+LLR +A L GK+
Sbjct: 1 MLEVTDLTKSYG-SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
T +D ++ R GV F +R + R+ L
Sbjct: 60 T---------------IDGVDTVRDPSFV-------RRKIGVLF-GERGLYARLTARENL 96
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
Y +L + RK K +L K L+
Sbjct: 97 KY-------------------------FARLNGLSRKEIKARIAELSKRLQ--------- 122
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L LD S G +Q++A AR L+ P I++LDE TS LD
Sbjct: 123 LLEYLDRRV---GEFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165
|
Length = 245 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-10
Identities = 80/277 (28%), Positives = 124/277 (44%), Gaps = 81/277 (29%)
Query: 491 SPEKSQKLLDIEDLTLKTPTSKATL---------VRDLSLVINEKEHLLVMGPSGSGKTS 541
PE + LL++EDL + P L V +SL + + L ++G SGSGK++
Sbjct: 269 LPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKST 328
Query: 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601
L A+ L +G+I F D+D L + + M R + R + VF
Sbjct: 329 LGLALLRLIP-SQGEIRF----------DGQDIDGL--SRKEM-----RPLRRRMQVVF- 369
Query: 602 LPQRPYMVLGSL--RQ---QLIYPTWTEEVKPASDAAKSAGLV---PFLTSAQKLENVGR 653
Q PY GSL R Q+I EE GL P L++A++ + V
Sbjct: 370 --QDPY---GSLSPRMTVGQII-----EE-----------GLRVHEPKLSAAERDQRV-- 406
Query: 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIV 713
I+ALE+V L T + S G++QR+A AR L+ KP+++
Sbjct: 407 ----------IEALEEVGL--------DPATRNRYPHEFSGGQRQRIAIARALILKPELI 448
Query: 714 LLDESTSALDEANEAHLYEQIEAA----GITYISVGH 746
LLDE TSALD + +A + + + G++Y+ + H
Sbjct: 449 LLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISH 485
|
Length = 534 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 2e-10
Identities = 31/85 (36%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
ALE + L ++ R + LS GE+QR+ AR L +P I+LLDE TS LD A
Sbjct: 81 ALELLGLAHLADR--PFNE-------LSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 726 NEAHLYEQIEA----AGITYISVGH 746
++ L E + G T + V H
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLH 156
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 62/241 (25%), Positives = 100/241 (41%), Gaps = 71/241 (29%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ L+L + E + ++GPSG+GK++L + + + G+I
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL----------------- 398
Query: 576 SLEVNSQNMNGELTRSMNRNS-RGVFFL-PQRPYMVLGSLRQQLIY--PTWT-EEVKPAS 630
++G R ++ R L PQ P + S+ + + Y P T EEV+ A+
Sbjct: 399 --------LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA 450
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY--EW 688
AA + + I AL + GY TY E
Sbjct: 451 RAAHA-------------------------HEFISALPE---GY---------DTYLGER 473
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGH 746
LS G++QR+A AR +L I+LLDE+TSALD +E + + +E G T + + H
Sbjct: 474 GVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAH 533
Query: 747 R 747
R
Sbjct: 534 R 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 64/238 (26%), Positives = 95/238 (39%), Gaps = 65/238 (27%)
Query: 492 PEKSQKLLDIED--LTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
P+K+ KLL + T + V D+SL + E E ++MG SGSGK++LLR + L
Sbjct: 14 PQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRL 73
Query: 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF----FLPQR 605
GK+ +D A S + E+ + + SM VF LP R
Sbjct: 74 IEPTSGKVLIDGQD----IAAMSRKELRELRRKKI------SM------VFQSFALLPHR 117
Query: 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665
++ + + + + V A + +A+ LE VG
Sbjct: 118 ------TVLENVAFGLEVQGVPRAEREER---------AAEALELVG------------- 149
Query: 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LE + Y LS G QQR+ AR L P I+L+DE+ SALD
Sbjct: 150 -LEGWEHKYP--------------DELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 5e-10
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE---AHLYEQIEAAGITYISVGHRR 748
LS GEQQR+A AR +++ P I++ DE T LD +L ++I AG T + H +
Sbjct: 137 LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAK 196
Query: 749 TLYDFHK-RVLRI 760
L D + RV+ +
Sbjct: 197 ELVDTTRHRVIAL 209
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 5e-10
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHR 747
LS+GE+Q + AR L ++++LDE T+AL A L++ I A G+ I + HR
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHR 141
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 54/209 (25%), Positives = 89/209 (42%), Gaps = 61/209 (29%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D + + + G SGSGKT+L+R +AGL G+I
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIV------------------- 55
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+NG + + +G+F P++ +G + Q+ A
Sbjct: 56 ------LNGRT---LFDSRKGIFLPPEK--RRIGYVFQE-------------------AR 85
Query: 638 LVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
L P L+ L G K ++PS + + +E + +G++L RL LS G
Sbjct: 86 LFPHLSVRGNL-RYGMKRARPSERRISFERVIELLGIGHLLGRL---------PGRLSGG 135
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDE 724
E+QR+A R LLS P+++L+DE +ALD+
Sbjct: 136 EKQRVAIGRALLSSPRLLLMDEPLAALDD 164
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 6e-10
Identities = 59/220 (26%), Positives = 85/220 (38%), Gaps = 65/220 (29%)
Query: 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590
++GPSG GKT+LLR +AG G I +D H ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHIN--------------- 45
Query: 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650
M S +F P+M ++ + + + K+
Sbjct: 46 -MVFQSYALF-----PHM---TVEENVAFGL-------------------------KMRK 71
Query: 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP 710
V R KP + AL V+L R LS G+QQR+A AR L+ KP
Sbjct: 72 VPRAEIKPRVLE---ALRLVQLEEFADR---------KPHQLSGGQQQRVALARALVFKP 119
Query: 711 QIVLLDESTSALD----EANEAHLYEQIEAAGITYISVGH 746
+I+LLDE SALD + + L E GIT++ V H
Sbjct: 120 KILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTH 159
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 6e-10
Identities = 62/233 (26%), Positives = 101/233 (43%), Gaps = 64/233 (27%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR 554
++IE+L L +A +++++L I + + ++GPSG GK++LLR+ M L R
Sbjct: 1 AIEIENLNLFYGEKEA--LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 555 --GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGS 612
GK+ F + D + +D +E+ R G+ F Q+P S
Sbjct: 59 IEGKVLF-----DGQDIYDKKIDVVEL--------------RRRVGMVF--QKPNPFPMS 97
Query: 613 LRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA--LEDV 670
+ + Y +K +L+ + +S L KA ++V
Sbjct: 98 IYDNIAYGPRLHGIKDKK----------------ELDEIVEES-------LKKAALWDEV 134
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
K RL+ LS G+QQRL AR L +P+++LLDE TSALD
Sbjct: 135 K-----DRLHDSALG------LSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 67/214 (31%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
V D SL + E E ++MG SGSGK++L+R + L RG+I VD
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL---------------VD 88
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
++ ++ R + R + F +S
Sbjct: 89 GKDIA--KLSAAELRELRRKKISMVF--------------------------------QS 114
Query: 636 AGLVPFLTSAQ------KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
L+P T + +++ V + + +ALE L + ++
Sbjct: 115 FALLPHRTVLENVAFGLEVQGVPKAEREE------RALE------ALELVGLEGYADKYP 162
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS G QQR+ AR L + P I+L+DE+ SALD
Sbjct: 163 NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 7e-10
Identities = 59/264 (22%), Positives = 109/264 (41%), Gaps = 62/264 (23%)
Query: 488 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547
GA+ + + ++ +D++ + V D+S + + ++GP+G+GK++L+ +
Sbjct: 324 GAIDLGRVKGAVEFDDVSFSYD-NSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQ 382
Query: 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY 607
++ G+I +D ++ + +TR+ R + V F Q
Sbjct: 383 RVFDPQSGRIL---------------IDGTDIRT------VTRASLRRNIAVVF--QDAG 419
Query: 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667
+ S+ + VGR + + +++ A
Sbjct: 420 LFNRSIEDNI--------------------------------RVGRPDA--TDEEMRAAA 445
Query: 668 EDVK-LGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
E + +I + + DT E LS GE+QRLA AR LL P I++LDE+TSALD
Sbjct: 446 ERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505
Query: 726 NEAHLYEQIEAA--GITYISVGHR 747
EA + ++ G T + HR
Sbjct: 506 TEAKVKAALDELMKGRTTFIIAHR 529
|
Length = 588 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 56/216 (25%), Positives = 92/216 (42%), Gaps = 62/216 (28%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T++ + L + E + ++GPSGSGKT+LLR + L E+ +A T
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLL---------------EQPEAGTIR 61
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
V + +++ RS+++ ++ LRQ + +
Sbjct: 62 VGDITIDT-------ARSLSQQKG-----------LIRQLRQHVGF------------VF 91
Query: 634 KSAGLVPFLTSAQKLENV------GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE 687
++ L P T LEN+ + K + L K+G L +T+Y
Sbjct: 92 QNFNLFPHRTV---LENIIEGPVIVKGEPKEEATARARELL-AKVG-----LAGKETSY- 141
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQR+A AR L +P+++L DE TSALD
Sbjct: 142 -PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
|
Length = 250 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 1e-09
Identities = 18/61 (29%), Positives = 37/61 (60%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ ++++ P +++D+SL I E + ++GPSGSGK++LL+ + L+ G+I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 559 F 559
Sbjct: 61 I 61
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-09
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 746
E LS G++QRL AR L+ KP+I+L DE+TSALD +A + E +E +T I + H
Sbjct: 584 EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAH 643
Query: 747 R 747
R
Sbjct: 644 R 644
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-09
Identities = 49/228 (21%), Positives = 90/228 (39%), Gaps = 43/228 (18%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++ +E+L+L L+ ++SL +N E + ++G +G+GK++LL+ +AG G
Sbjct: 1 MSMITLENLSLAYGDRP--LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG 58
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
++T R + +D + V+ +
Sbjct: 59 EVTRPKGLRVGYLSQEPPLDP----------------EKTVLDY---------VIEGFGE 93
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
E+ + A + P +LE + ++L + +
Sbjct: 94 L-------RELLAELEEAYALLADPDDELLAELEAL--------LEELDGWTLEARAEEA 138
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L L D SS LS G ++R+A AR LL +P ++LLDE T+ LD
Sbjct: 139 LLGLGFPDEDRPVSS-LSGGWRRRVALARALLEEPDLLLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 62/258 (24%), Positives = 110/258 (42%), Gaps = 66/258 (25%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
++ +E+++ P S+ ++++S INE E++ ++G +GSGK+++ + + GL
Sbjct: 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQS 63
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
G+I +D + ++ +N+ E+ R G+ F Q P
Sbjct: 64 GEIK---------------IDGITISKENLK-EI-----RKKIGIIF--QNP-------D 93
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN--VGRKSSKPSTDDLIKALEDVKL 672
Q I T +++ A LEN V K K DDL K V +
Sbjct: 94 NQFIGATVEDDI------------------AFGLENKKVPPKKMKDIIDDLAKK---VGM 132
Query: 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
L + LS G++QR+A A +L P+I++ DESTS LD + + +
Sbjct: 133 EDYLDKE---------PQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK 183
Query: 733 QI----EAAGITYISVGH 746
+ + T IS+ H
Sbjct: 184 IMVDLRKTRKKTLISITH 201
|
Length = 271 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 60/218 (27%), Positives = 83/218 (38%), Gaps = 71/218 (32%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
V + SL I E E ++MG SGSGK++LLRA+ GL RG + VKD +
Sbjct: 40 VHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSV--LVKDGDG--------- 88
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
V+ N + R + + R MV QQ
Sbjct: 89 --SVDVANCDAATLRRLRTH---------RVSMVF----QQF------------------ 115
Query: 636 AGLVPFLTSAQKLENVG-----RKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWS 689
L+P+ T ENV + K + LE V L +W+
Sbjct: 116 -ALLPWRTVE---ENVAFGLEMQGMPKAERRKRVDEQLELVGLA-------------QWA 158
Query: 690 SV----LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G QQR+ AR ++ I+L+DE SALD
Sbjct: 159 DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 65/244 (26%), Positives = 93/244 (38%), Gaps = 70/244 (28%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
L+ +SL + E L ++GP+G+GK++LL+A++G S G++T
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPE--- 71
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
EL R R V LPQ L +P +EV
Sbjct: 72 -------------ELARH-----RAV--LPQN---------SSLAFPFTVQEVV------ 96
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSV 691
G +P R +P D+ I +AL L + R Y
Sbjct: 97 -QMGRIP-----------HRSGREPEEDERIAAQALAATDLSGLAGRD------YR---T 135
Query: 692 LSLGEQQRLAFARLLLSKPQIV------LLDESTSALDEANEAHLYE---QIEAAGITYI 742
LS GEQQR+ AR+L V LDE TSALD A++ H Q+ G +
Sbjct: 136 LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVL 195
Query: 743 SVGH 746
+V H
Sbjct: 196 AVLH 199
|
Length = 259 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 3e-09
Identities = 64/254 (25%), Positives = 110/254 (43%), Gaps = 64/254 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ +T + S V D+S + + ++GP+G+GKT+L+ + ++ G+I
Sbjct: 335 VEFRHITFEFANSSQG-VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+D +++N+ +TR R S F
Sbjct: 394 ---------------IDGIDINT------VTRESLRKSIATVF----------------- 415
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLG-YILP 677
+ AGL F S ++ +GR+ + + +++ +A + +IL
Sbjct: 416 ---------------QDAGL--FNRSIRENIRLGREGA--TDEEVYEAAKAAAAHDFILK 456
Query: 678 RLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736
R N DT E + LS GE+QRLA AR +L I++LDE+TSALD EA + I+A
Sbjct: 457 RSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA 516
Query: 737 AG---ITYISVGHR 747
T+I + HR
Sbjct: 517 LRKNRTTFI-IAHR 529
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 64/236 (27%), Positives = 105/236 (44%), Gaps = 48/236 (20%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+ LL + L+ K RD+S + E L ++G SGSGKT+LL+ ++G +
Sbjct: 3 DKPLLSVSGLSKLYGPGKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDA 60
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
G +T+ ++D + D +T M+ R + R G F+ Q P LR
Sbjct: 61 GTVTYRMRDGQPRDLYT------------MSEAERRRLLRTEWG--FVHQNP---RDGLR 103
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
Q+ SAG ++L +G + + LE+V++
Sbjct: 104 MQV-----------------SAGG----NIGERLMAIGARHYGNIRAEAQDWLEEVEID- 141
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
L R++ L T+ S G QQRL AR L+++P++V +DE T LD + +A L
Sbjct: 142 -LDRIDDLPRTF------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 190
|
Length = 258 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 56/260 (21%), Positives = 114/260 (43%), Gaps = 77/260 (29%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+++E+L+++ +++++S + E + ++G +G+GK++L+ A+ GKI
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIE 66
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+D +++++ + +L S+ +PQ P + G++R L
Sbjct: 67 ---------------IDGIDISTIPL-EDLRSSLT-------IIPQDPTLFSGTIRSNL- 102
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
D PF + S +++ AL V G
Sbjct: 103 ------------D--------PF--------------DEYSDEEIYGALR-VSEG----- 122
Query: 679 LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EA 736
LS G++Q L AR LL +P++++LDE+T+++D A +A + + I E
Sbjct: 123 ----------GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF 172
Query: 737 AGITYISVGHR-RTLYDFHK 755
T +++ HR RT+ D+ K
Sbjct: 173 TNSTILTIAHRLRTIIDYDK 192
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T + DL+L I + E ++++GPSG GKT+ LR +AGL G+I Y+ R+ TD D
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI--YIGGRDVTDLPPKD 71
Query: 574 VD 575
D
Sbjct: 72 RD 73
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 5e-09
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGH 746
LS G++QR+ AR L P ++LLDE + +D A + +Y+ ++ G T + V H
Sbjct: 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTH 197
|
Length = 254 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-09
Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
LS G++QR+A AR L+ +P++++LDE TSALD + +A L E + G+TY+ + H
Sbjct: 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200
|
Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 6e-09
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747
LS G++QR+A AR L+ P+I++ DE+TSALD +EA + + G T I + HR
Sbjct: 594 LSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHR 651
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 499 LDIEDLTLKTP----TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
L +LT+ S L++++S E +MGPSG+GK++LL A+AG
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAG 57
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 496 QKLLDIEDLTL--KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553
LL + +L++ + ++SL I E L ++G SGSGK++L R +AGL
Sbjct: 1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS 60
Query: 554 RGKITF 559
G I
Sbjct: 61 SGSILL 66
|
Length = 252 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 58.8 bits (142), Expect = 1e-08
Identities = 65/230 (28%), Positives = 107/230 (46%), Gaps = 59/230 (25%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
S +D++ LT K + +++DLS + + + ++G +GSGK++LL A+ L S
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--- 1270
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
T+ +D + NS +T R + GV +PQ+ ++ G+ R
Sbjct: 1271 ------------TEGEIQ-IDGVSWNS------VTLQTWRKAFGV--IPQKVFIFSGTFR 1309
Query: 615 QQL-IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLG 673
+ L Y W++E + K A E VG KS +I+ D KL
Sbjct: 1310 KNLDPYEQWSDE-----EIWKVA------------EEVGLKS-------VIEQFPD-KLD 1344
Query: 674 YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
++L +D Y VLS G +Q + AR +LSK +I+LLDE ++ LD
Sbjct: 1345 FVL-----VDGGY----VLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE---AHLYEQIEAAGITYISVGH 746
S LS GEQQR+A AR ++++P ++L DE T LD L+E+I G T + H
Sbjct: 136 SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATH 195
Query: 747 RRTLYD-FHKRVLRIS 761
L + RVL +
Sbjct: 196 DLELVNRMRHRVLALE 211
|
Length = 223 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 43/119 (36%), Positives = 53/119 (44%), Gaps = 22/119 (18%)
Query: 638 LVPFLTSAQKLENVG-----RKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSV 691
L P LT A EN+ R K ++ LE V L +L R +
Sbjct: 83 LFPHLTVA---ENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNR---------YPHE 130
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD----EANEAHLYEQIEAAGITYISVGH 746
LS G+QQR+A AR L +P ++LLDE SALD E L E GIT I V H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH 189
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 64/273 (23%), Positives = 109/273 (39%), Gaps = 64/273 (23%)
Query: 498 LLDIEDLTLKTPTS-------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
LL++ D+T T +A ++ ++SL I E E + ++G SG GK++L R + GL
Sbjct: 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE 61
Query: 551 SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610
+G ++F G+ ++R R F +R
Sbjct: 62 KPAQGTVSF-------------------------RGQDLYQLDRKQRRAF---RRDV--- 90
Query: 611 GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670
QL++ V P + G + L ++ + + L+ V
Sbjct: 91 -----QLVFQDSPSAVNPRMTVRQIIG--------EPLRHLTSLDESEQKARIAELLDMV 137
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
L R D + LS G+ QR+ AR L KP++++LDE+ S LD +A +
Sbjct: 138 GL-----RSEDAD---KLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVI 189
Query: 731 YEQIE----AAGITYISVGHR-RTLYDFHKRVL 758
E + A G Y+ + H R + F +RV
Sbjct: 190 LELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 62/234 (26%), Positives = 99/234 (42%), Gaps = 69/234 (29%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR- 554
+++ DL L A ++D++L I + + ++GPSG GK++LLR M L R
Sbjct: 8 IEVRDLNLYYGDKHA--LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 555 -GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
G++ K + + VD +E+ R G+ F Q+P S+
Sbjct: 66 EGEVLLDGK-----NIYDPKVDVVEL--------------RRRVGMVF--QKPNPFPMSI 104
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA--LEDVK 671
+ Y + G+ ++L+ + S L KA ++VK
Sbjct: 105 YDNVAY------------GLRLHGIKD-----KELDEIVESS-------LKKAALWDEVK 140
Query: 672 LGYILPRLNSLDTTYEWSSVLSL--GEQQRLAFARLLLSKPQIVLLDESTSALD 723
RL+ S L L G+QQRL AR L KP+++L+DE TSALD
Sbjct: 141 -----DRLHK--------SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 2e-08
Identities = 68/241 (28%), Positives = 97/241 (40%), Gaps = 73/241 (30%)
Query: 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590
V+G +G+GK++LLR MAG VD + NGE
Sbjct: 36 VLGLNGAGKSTLLRIMAG-------------------------VD------KEFNGEARP 64
Query: 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWT--EEVKPASDAAKSAGLVPFLTSAQKL 648
+ V +LPQ P + PT T E V+ G+ + +
Sbjct: 65 APGIK---VGYLPQEPQL----------DPTKTVRENVE--------EGVAEIKDALDRF 103
Query: 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLN--SLDTTYE----------WS---SVLS 693
+ K ++P D E +L I+ + LD E W + LS
Sbjct: 104 NEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLS 163
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ--IEAAGITYISVGHRRTLY 751
GE++R+A RLLLSKP ++LLDE T+ LD + A L EQ E G T ++V H R
Sbjct: 164 GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWL-EQHLQEYPG-TVVAVTHDRYFL 221
Query: 752 D 752
D
Sbjct: 222 D 222
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 24/119 (20%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L I +++ P + ++++LSL + + E + ++G SGSGK++LL+ + G +G+IT
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
V ++ L S + L QRPY+ +LR L
Sbjct: 61 LD-----------------GVPVSDLEKAL-------SSLISVLNQRPYLFDTTLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 66/223 (29%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L++ +L + S ++R +SL + + E V+G +G GKT+LL+ + GL G I
Sbjct: 1 LEVSNLNVYYGQS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+D + H R G+ ++PQ G +++
Sbjct: 59 LDGEDITKLPPH----------------------ERARAGIAYVPQ------G---REIF 87
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV--GRKSSKPSTDDLIKALEDVKLGYIL 676
P LT + L D I L V L +L
Sbjct: 88 ---------------------PRLTVEENLLTGLAALPRRSRKIPDEIYELFPV-LKEML 125
Query: 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDEST 719
R LS G+QQ+LA AR L+++P+++LLDE T
Sbjct: 126 GRRGGD---------LSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 56/239 (23%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--G 555
IE + L+ +++ + L I + +MGPSG GK++LLR + L + R G
Sbjct: 5 IETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG 64
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
++ + ++ ++ DVD +EV R G+ F P+ L
Sbjct: 65 EVRLFGRN-----IYSPDVDPIEV--------------RREVGMVFQYPNPFPHLT---- 101
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
IY + A L + S ++L+ + K + ++VK
Sbjct: 102 --IY----------DNVAIGVKLNGLVKSKKELDERVEWALKKAA-----LWDEVK---- 140
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
RLN ++ S LS G++QRL AR L KP+I+L+DE T+ +D A + E +
Sbjct: 141 -DRLN------DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELL 192
|
Length = 253 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 65/257 (25%), Positives = 110/257 (42%), Gaps = 79/257 (30%)
Query: 492 PEKSQKLLDIEDLTLKTPTSKATL---------VRDLSLVINEKEHLLVMGPSGSGKTS- 541
PE + LLD+E L + P K L V+++S + E L ++G SGSGK++
Sbjct: 269 PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTT 328
Query: 542 ---LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG 598
LLR + +G+I F +G+ ++NR
Sbjct: 329 GLALLRLINS-----QGEIWF-------------------------DGQPLHNLNRRQ-- 356
Query: 599 VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK--SAGLV---PFLTSAQKLENVGR 653
LP R R Q+++ + P + + GL P L++AQ+ + V
Sbjct: 357 --LLPVRH-------RIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQV-- 405
Query: 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIV 713
I +E+V L +T + + + S G++QR+A AR L+ KP ++
Sbjct: 406 ----------IAVMEEVGL--------DPETRHRYPAEFSGGQRQRIAIARALILKPSLI 447
Query: 714 LLDESTSALDEANEAHL 730
+LDE TS+LD+ +A +
Sbjct: 448 ILDEPTSSLDKTVQAQI 464
|
Length = 529 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-08
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 52/255 (20%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
+ LL + L+ K RD+S + E L ++G SGSGK++LL +AG + G
Sbjct: 1 KPLLQVSGLSKSYGGGKG--CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG 58
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
T+ ++ E + + ++ R + R G F+ Q P LR
Sbjct: 59 TATYIMRSGAELELYQ------------LSEAERRRLMRTEWG--FVHQNP---RDGLRM 101
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
++ SAG ++L +G + LE+V++
Sbjct: 102 RV-----------------SAGA----NIGERLMAIGARHYGNIRATAQDWLEEVEID-- 138
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
R++ L + S G QQRL AR L+++P++V +DE T LD + +A L + +
Sbjct: 139 PTRIDDLPRAF------SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR 192
Query: 736 A----AGITYISVGH 746
G+ I V H
Sbjct: 193 GLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 26/58 (44%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGHR 747
S GE+QRLA AR+LL IVLLDE T LD E L I T I + H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHH 156
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 4e-08
Identities = 57/253 (22%), Positives = 85/253 (33%), Gaps = 74/253 (29%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
L LS +N E L V GP+G GKT+LLR +AGL G++ +
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRW-------------- 59
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ + Q + ++Y
Sbjct: 60 -NGTALAEQR---------------------------DEPHRNILY------------LG 79
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
GL P L++ + L + + AL V L T +E
Sbjct: 80 HLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAAVGL-----------TGFEDLPAAQ 127
Query: 694 LGEQQR--LAFARLLLSKPQIVLLDESTSALDEAN----EAHLYEQIEAAGITYISVGHR 747
L Q+ LA ARL LS+ + +LDE T+ALD+A L + GI ++
Sbjct: 128 LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQ- 186
Query: 748 RTLYDFHKRVLRI 760
L R LR+
Sbjct: 187 -DLGLVEARELRL 198
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-08
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 638 LVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQ 697
L P LT + L R K + +ALE V L L R LS G++
Sbjct: 47 LFPELTVRENLFFGLRD--KEADARAEEALERVGLPDFLDREPV--------GTLSGGQK 96
Query: 698 QRLAFARLLLSKPQIVLLDESTS 720
QR+A AR LL KP+++LLDE T+
Sbjct: 97 QRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 5e-08
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
++E+L++ T++ DLSL I E + ++GP+G+GK++LL+ +AGL G+I
Sbjct: 1 EVENLSVGYG--GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 5e-08
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 65/255 (25%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW---SDGRG 555
++ + ++ P SK + D+S I ++G +GSGK+++ + + GL +
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
KIT VD + + ++ + R G+ F Q P
Sbjct: 66 KIT---------------VDGITLTAKTVWDI------REKVGIVF--QNP-------DN 95
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
Q + T ++V A LEN R +P ++IK + DV
Sbjct: 96 QFVGATVGDDV------------------AFGLEN--RAVPRP---EMIKIVRDV----- 127
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI- 734
L + LD + LS G++QR+A A +L +P+I++LDESTS LD A + + + I
Sbjct: 128 LADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 735 ---EAAGITYISVGH 746
+ +T IS+ H
Sbjct: 188 KLKKKNNLTVISITH 202
|
Length = 282 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 5e-08
Identities = 50/233 (21%), Positives = 84/233 (36%), Gaps = 59/233 (25%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ L+ E L ++G +G+GK++LL + GL G + D E D
Sbjct: 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI---DGEPLD-------- 57
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
+ +G+ QR +V QL ++V +
Sbjct: 58 -----------------YSRKGLLERRQRVGLVFQDPDDQLFAADVDQDV--------AF 92
Query: 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
G + S ++E R+ AL V + R LS GE
Sbjct: 93 GPLNLGLSEAEVERRVRE-----------ALTAVGASGLRERPTHC---------LSGGE 132
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGH 746
++R+A A + +P ++LLDE T+ LD A + + A G+T + H
Sbjct: 133 KKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-08
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+L RL + LS G+QQR+A AR L+ +PQ++L DE T+ALD A + I
Sbjct: 125 LLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 735 E---AAGITYISVGH 746
GIT + V H
Sbjct: 185 RELAETGITQVIVTH 199
|
Length = 242 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 6e-08
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGIT--YISVGH 746
LS+ ++Q + AR L ++++LDE T+AL L++ I A G+ YIS H
Sbjct: 146 LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS--H 203
Query: 747 R 747
R
Sbjct: 204 R 204
|
Length = 500 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 56/241 (23%), Positives = 103/241 (42%), Gaps = 64/241 (26%)
Query: 490 LSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
++ + + L +DL + +A ++ + + + + ++GPSGSGK++ LR++ +
Sbjct: 12 ITFPEEEIALSTKDLHVYYGKKEA--IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRM 69
Query: 550 WSDG------RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603
+D G+I + +++N + +N M ++ VF
Sbjct: 70 -NDTIDIARVTGQILY---------------RGIDINRKEIN---VYEMRKHIGMVF--- 107
Query: 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL 663
QRP S+ + + + A + AG+ + L+ + S K +
Sbjct: 108 QRPNPFAKSIYENITF------------ALERAGV----KDKKVLDEIVETSLKQA---- 147
Query: 664 IKALED-VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
AL D VK D ++ + LS G+QQRL AR + KP I+L+DE SAL
Sbjct: 148 --ALWDQVK-----------DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASAL 194
Query: 723 D 723
D
Sbjct: 195 D 195
|
Length = 267 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 8e-08
Identities = 56/232 (24%), Positives = 90/232 (38%), Gaps = 64/232 (27%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRG 555
+L+I+DL ++ K L + ++L + E E +MGP+GSGK++L + G + G
Sbjct: 3 MLEIKDLHVEVEGKKEIL-KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG 61
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
+I F D E D+ L + R G+F Q P + G
Sbjct: 62 EILF---DGE-------DILELSPDE------------RARAGIFLAFQYPVEIPG---- 95
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD---LIKALEDVKL 672
V FL +A N R + + L + E + L
Sbjct: 96 ----------VT----------NSDFLRAAM---NARRGARGILPEFIKELKEKAELLGL 132
Query: 673 GY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L R ++ S GE++R +LLL +P++ +LDE S LD
Sbjct: 133 DEEFLER--YVNEG------FSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 9e-08
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGH 746
LS G+QQR+A AR L P ++LLDE TSALD + +++ GIT + V H
Sbjct: 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTH 159
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 9e-08
Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR-R 748
LS GE+QR+A AR +L P I++LDE+TSALD E + + +AG T + + HR
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 749 TLYDFHK 755
T+ D +
Sbjct: 460 TIIDADE 466
|
Length = 497 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 9e-08
Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 60/218 (27%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--DGR----GKITFYVKDREETD 568
+++D+++ I +MGPSGSGK++LL+ + L D + GK+ ++ KD
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKD----- 79
Query: 569 AHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP 628
+D++++ R G+ F P+ L S+ + YP + +K
Sbjct: 80 --IFQIDAIKL--------------RKEVGMVFQQPNPFPHL-SIYDNIAYPLKSHGIKE 122
Query: 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEW 688
+ K + L VG L K + D RLNS
Sbjct: 123 KREIKK--------IVEECLRKVG----------LWKEVYD--------RLNSP------ 150
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
+S LS G+QQRL AR L KP+++L+DE TS +D N
Sbjct: 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
|
Length = 257 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 10/62 (16%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA------NE-AHLYEQIEAAGITYISV 744
LS G+QQR+A AR +++KP+++LLDES SALD NE L ++ GIT++ V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL---GITFVFV 201
Query: 745 GH 746
H
Sbjct: 202 TH 203
|
Length = 375 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 21/48 (43%), Positives = 28/48 (58%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+ DLSL + E L ++GPSG GKT+LLR +AGL G+I
Sbjct: 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 71/238 (29%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
+++D+S+ ++GPSG+GK++L++ + L G I + D T DV
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI-----DGVDIKTIDV 72
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
L R G+ F Q+P++ G+++ + Y
Sbjct: 73 IDL----------------RRKIGMVF--QQPHLFEGTVKDNIEYG-------------- 100
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSV--L 692
P L K ++V + Y L + L+ Y V L
Sbjct: 101 -----PML----------------------KGEKNVDVEYYL-SIVGLNKEYATRDVKNL 132
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
S GE QR++ AR L + P+++LLDE TSALD + + E I +T I + H
Sbjct: 133 SGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569
+ D+SL I E + ++GPSG+GK++LLR +AGL + G+I R D
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL--NGRVLFDV 69
|
Length = 345 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 62/242 (25%), Positives = 100/242 (41%), Gaps = 61/242 (25%)
Query: 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586
E + G SG+GK++LL+ + G+ GKI F H
Sbjct: 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF--------SGH---------------- 64
Query: 587 ELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646
++TR NR V FL ++ M+ L+ T + V +P + +
Sbjct: 65 DITRLKNRE---VPFLRRQIGMIFQD-HHLLMDRTVYDNVA-----------IPLIIAGA 109
Query: 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLL 706
+++ R+ S AL+ V L LD + LS GEQQR+ AR +
Sbjct: 110 SGDDIRRRVSA--------ALDKVGL---------LDKAKNFPIQLSGGEQQRVGIARAV 152
Query: 707 LSKPQIVLLDESTSALDEA-NEA--HLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTV 763
++KP ++L DE T LD+A +E L+E+ G+T + H L +R R+ T+
Sbjct: 153 VNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGL--ISRRSYRMLTL 210
Query: 764 DQ 765
Sbjct: 211 SD 212
|
Length = 222 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (128), Expect = 1e-07
Identities = 71/253 (28%), Positives = 109/253 (43%), Gaps = 64/253 (25%)
Query: 489 ALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA--- 545
A PE + +L+++DL++ +A V D+S+ I + ++GPSG GK++ LR+
Sbjct: 12 APFPEAKEHILEVKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLRSINR 69
Query: 546 MAGLWSDGR--GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603
M L R G+I + + L + N+N ++ R VF
Sbjct: 70 MNDLIPSARSEGEILY---------------EGLNILDSNIN---VVNLRREIGMVF--- 108
Query: 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL 663
Q+P S IY T +K A + KS L+ + +S L
Sbjct: 109 QKPNPFPKS-----IYNNITHALKYAGERRKSV-----------LDEIVEES-------L 145
Query: 664 IKAL--EDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
KA ++VK D + + LS G+QQRL AR L KP ++LLDE SA
Sbjct: 146 TKAALWDEVK-----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASA 194
Query: 722 LDEANEAHLYEQI 734
LD + A + E I
Sbjct: 195 LDPISNAKIEELI 207
|
Length = 268 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 63/233 (27%)
Query: 496 QKLLDIEDLTLKTP--TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553
Q++L D+ LK A ++ D+SL + + + ++G SGSGKT+LL A++G G
Sbjct: 1 QRVLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGG 60
Query: 554 ---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610
G+I F N Q + + + V ++ Q
Sbjct: 61 GTTSGQILF--------------------NGQPRKPDQFQ------KCVAYVRQ------ 88
Query: 611 GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670
D L+P LT + L + D I+
Sbjct: 89 -------------------DDI-----LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE 124
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ L L +S GE++R++ A LL P++++LDE TS LD
Sbjct: 125 DVL--LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 66/260 (25%), Positives = 103/260 (39%), Gaps = 64/260 (24%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWS 551
+ +L ++L L A + D+++ I + ++GPSG GK++LLR M L
Sbjct: 3 MEIILSTKNLNLWYGEKHA--LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIP 60
Query: 552 DGR--GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609
R G I + + S D + + R G+ F QRP
Sbjct: 61 GCRITGDILY-----NGENIMDSGADVVAL--------------RRKIGMVF--QRPNPF 99
Query: 610 LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL-E 668
S+ + + Y P K+ L+ + KS K + AL +
Sbjct: 100 PKSIYENVAY-------GPRIHGEKNKK---------TLDTIVEKSLKGA------ALWD 137
Query: 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728
+VK D ++ + LS G+QQRL AR L P+++L+DE SALD A
Sbjct: 138 EVK-----------DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
Query: 729 HLYEQIE--AAGITYISVGH 746
+ + IE T I V H
Sbjct: 187 KIEDLIEDLKKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 1e-07
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 14/89 (15%)
Query: 662 DLIKALEDVK--LGYILPRLNSLDTTYEWSSV-----LSLGEQQRLAFARLLLSKPQIVL 714
D+ K E+VK +GY LP SL YE +V LS G +QRLA A+ LL P++++
Sbjct: 63 DIKKEPEEVKRRIGY-LPEEPSL---YENLTVRENLKLSGGMKQRLALAQALLHDPELLI 118
Query: 715 LDESTSALDEANEAHLYEQIE---AAGIT 740
LDE TS LD + +E + G T
Sbjct: 119 LDEPTSGLDPESRREFWELLRELKKEGKT 147
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-07
Identities = 27/61 (44%), Positives = 35/61 (57%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY 751
LS GE+ RLA A+LLL P ++LLDE T+ LD + L E ++ T I V H R
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 752 D 752
D
Sbjct: 131 D 131
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+ T++ D+SL I E + ++GPSGSGK++LLR +AGL G I
Sbjct: 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE------AAGITYISVG 745
LS G+QQR+A AR L+++P+++LLDE ALD + Q+E GIT++ V
Sbjct: 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM--QLELKRLQKELGITFVFVT 188
Query: 746 H 746
H
Sbjct: 189 H 189
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 499 LDIEDLTLKTPTSKATL--VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
L++ +++ + + D+SL + E E + ++GPSG GK++LLR +AGL G+
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 557 ITF 559
+
Sbjct: 61 VLV 63
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 10/97 (10%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749
LS G++QR+A AR L+ P+I++ DE+TSALD +E + + AG T I + HR +
Sbjct: 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS 198
Query: 750 LYDFHKRVLRI---STVDQNSSQSNWKLEFIDQESLY 783
R++ + V+Q S E + + LY
Sbjct: 199 TVKNADRIIVMEKGRIVEQGSHD-----ELLAENGLY 230
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 62/233 (26%), Positives = 100/233 (42%), Gaps = 66/233 (28%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR- 554
+ ++DL L +A ++ ++L I E + ++GPSG GK++ LR M L +
Sbjct: 4 ISVKDLDLFYGDFQA--LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI 61
Query: 555 -GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
G++ + D + SD+D ++ R G+ F Q+P S+
Sbjct: 62 EGEVLL-----DGQDIYKSDIDVNQL--------------RKRVGMVF--QQPNPFPMSI 100
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL-EDVKL 672
+ Y T +K +KL+ + KS K + AL ++VK
Sbjct: 101 YDNVAYGPRTHGIK----------------DKKKLDEIVEKSLKGA------ALWDEVK- 137
Query: 673 GYILPRLNSLDTTYEWSSVLSL--GEQQRLAFARLLLSKPQIVLLDESTSALD 723
RL S L L G+QQRL AR L +P+++L+DE TSALD
Sbjct: 138 ----DRLKK--------SALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 2e-07
Identities = 36/105 (34%), Positives = 56/105 (53%), Gaps = 16/105 (15%)
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLL 706
E+V R + D+ I++L N DT + LS G++QR+A AR L
Sbjct: 1325 REDVKRACKFAAIDEFIESLP-----------NKYDTNVGPYGKSLSGGQKQRIAIARAL 1373
Query: 707 LSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGHR 747
L +P+I+LLDE+TS+LD +E + + I + A T I++ HR
Sbjct: 1374 LREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGE 696
G+ LT+ + L R + + +AL V L + D LS G+
Sbjct: 85 GIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLE------DLPV---GQLSAGQ 135
Query: 697 QQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
Q+R+A ARL LS + +LDE +ALD+ A L
Sbjct: 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
|
Length = 209 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 57/221 (25%), Positives = 80/221 (36%), Gaps = 65/221 (29%)
Query: 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566
KT K V D L I + E ++MG SGSGK++ +R + L G+I
Sbjct: 2 KTGGKKG--VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIF-------- 51
Query: 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV 626
+D N + R + R G+ F QQ
Sbjct: 52 -------IDG--ENIMKQSPVELREVRRKKIGMVF-------------QQF--------- 80
Query: 627 KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL----GYILPRLNSL 682
L P +T Q P + KALE +KL Y
Sbjct: 81 ----------ALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE------- 123
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ + LS G QQR+ AR L ++P I+L+DE+ SALD
Sbjct: 124 ---HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 27/59 (45%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGH 746
LS G+QQR+A AR L + P ++LLDE SALD HL +I G+T I V H
Sbjct: 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTH 193
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 68/268 (25%), Positives = 112/268 (41%), Gaps = 60/268 (22%)
Query: 498 LLDIEDLTLKTPTSKATL--VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
LL+++D+ P+ + + ++ +SL I E + ++G SGSGK++L+ + L G
Sbjct: 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG 63
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
T+ V + DV +L+ L + + R G F QR +
Sbjct: 64 --TYRVAGQ--------DVATLD------ADALAQ-LRREHFGFIF--QRYH-------- 96
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
L+ LT+AQ +E + L++A E +
Sbjct: 97 ----------------------LLSHLTAAQNVEVPAVYAGLERKQRLLRAQE------L 128
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH---LYE 732
L RL D S LS G+QQR++ AR L++ Q++L DE T ALD + +
Sbjct: 129 LQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILH 188
Query: 733 QIEAAGITYISVGHRRTLYDFHKRVLRI 760
Q+ G T I V H + +RV+ I
Sbjct: 189 QLRDRGHTVIIVTHDPQVAAQAERVIEI 216
|
Length = 648 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 60/237 (25%), Positives = 100/237 (42%), Gaps = 56/237 (23%)
Query: 493 EKSQKLLDIEDL--TLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
+++ LLD++DL T TP T V DL+ + E L ++G SGSGK+ A+ GL
Sbjct: 7 QQADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66
Query: 551 SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610
+ NG + S N R + LP++ L
Sbjct: 67 AA--------------------------------NGRIGGSATFNGREILNLPEKE---L 91
Query: 611 GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV----GRKSSKPSTDDLIKA 666
LR + I + D S L P++ ++L V S + ++ ++
Sbjct: 92 NKLRAEQISMIF-------QDPMTS--LNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRM 142
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L+ VK+ R+ +E+S G +QR+ A LL +P++++ DE T+ALD
Sbjct: 143 LDAVKMPEARKRMKMY--PHEFSG----GMRQRVMIAMALLCRPKLLIADEPTTALD 193
|
Length = 330 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 67/209 (32%)
Query: 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580
LV+ E + ++G SGSGK++LL +AGL D + +V +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGL-----------------DDGSSGEVSLVGQP 73
Query: 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVP 640
M+ E + G F +S L+P
Sbjct: 74 LHQMDEEARAKLRAKHVGFVF--------------------------------QSFMLIP 101
Query: 641 FLTSAQKLENVGR------KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
L + LENV +SS+ S + LE + LG RL+ L + LS
Sbjct: 102 TLNA---LENVELPALLRGESSRQSRNGAKALLEQLGLG---KRLDHL------PAQLSG 149
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALD 723
GEQQR+A AR +P ++ DE T LD
Sbjct: 150 GEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 66/256 (25%), Positives = 92/256 (35%), Gaps = 87/256 (33%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
LS + E L ++GP+G+GK++LL MAGL G G I F + E A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAA-------- 65
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGL 638
EL R R Y L QQ
Sbjct: 66 --------ELAR-------------HRAY-----LSQQ----------------QTPPFA 83
Query: 639 VP---FLTSAQKLENVGRKSSKPSTDDLIKALEDV----KLGYILPRLNSLDTTYEWSSV 691
+P +LT Q K T+ + AL +V L L R S++
Sbjct: 84 MPVFQYLTLHQ--------PDKTRTEAVASALNEVAEALGLDDKLGR--SVNQ------- 126
Query: 692 LSLGEQQRLAFARLLL-----SKP--QIVLLDESTSALDEANEAHLYEQIE---AAGITY 741
LS GE QR+ A ++L P Q++LLDE ++LD A +A L + GI
Sbjct: 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAV 186
Query: 742 ISVGH--RRTLYDFHK 755
+ H TL +
Sbjct: 187 VMSSHDLNHTLRHADR 202
|
Length = 248 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 58/255 (22%), Positives = 91/255 (35%), Gaps = 65/255 (25%)
Query: 498 LLDIEDLT--LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++ + LT + V +S + E ++GP+G+GKT+ LR +AGL G
Sbjct: 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
T VD +V + E R + G Y L + R+
Sbjct: 61 FAT---------------VDGFDVVKEPA--EARRRL-----GFVSDSTGLYDRL-TARE 97
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
L Y +K D + + L A +L ++ L D ++G
Sbjct: 98 NLEYFAGLYGLKG--DELTAR--LEEL--ADRLG--------------MEELLDRRVGG- 136
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
S G +Q++A AR L+ P ++LLDE T+ LD L E I
Sbjct: 137 ----------------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIR 180
Query: 736 ---AAGITYISVGHR 747
A G + H
Sbjct: 181 QLRALGKCILFSTHI 195
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 64/238 (26%), Positives = 98/238 (41%), Gaps = 71/238 (29%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDG 553
K +D++DL + + A V D++L I + +GPSG GK+++LR M +
Sbjct: 3 KRIDVKDLNIYYGSFHA--VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGA 60
Query: 554 R--GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR----PY 607
R G++ + D + VD + V R + G+ F QR P
Sbjct: 61 RVEGEVLL-----DGEDLYGPGVDPVAV--------------RRTIGMVF--QRPNPFPT 99
Query: 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI-KA 666
M S+R ++ AGL KL V K D+L+ K+
Sbjct: 100 M---SIRDNVV-----------------AGL--------KLNGVRNKKD---LDELVEKS 128
Query: 667 LEDVKL-GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L L + RL+ LS G+QQRL AR + +P ++L+DE SALD
Sbjct: 129 LRGANLWNEVKDRLDKP------GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
++++E+LT+ ++ D+SL + + E ++GP+G+GK++LL+A+ GL
Sbjct: 1 MMPMIEVENLTVSY--GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 555 GKITFYVKDREE 566
G+I + K +
Sbjct: 59 GEIKIFGKPVRK 70
|
Length = 254 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 63/267 (23%), Positives = 115/267 (43%), Gaps = 59/267 (22%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGK 556
+++++LT K + ++++S I E E L ++G SG+GK+ L+ + G+ + G+
Sbjct: 1 IEVKNLTKKFDGKEV--LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 557 ITFYV-------------KDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603
I ++V K E ++ EV+ N++ +L R + + +
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIML--- 115
Query: 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL 663
QR + + G T + V A LE +G + K +
Sbjct: 116 QRTFALYGD-------DTVLDNVLEA------------------LEEIGYEG-KEAVGRA 149
Query: 664 IKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ +E V+L + R+ + + LS GE+QR+ AR L +P + L DE T LD
Sbjct: 150 VDLIEMVQLSH---RITHI------ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200
Query: 724 --EANEAH--LYEQIEAAGITYISVGH 746
A H L E ++A+GI+ + H
Sbjct: 201 PQTAKLVHNALEEAVKASGISMVLTSH 227
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 22/59 (37%), Positives = 31/59 (52%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572
L LS + E L++ GP+GSGKT+LLR +AGL G I D ++ D +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEA 74
|
Length = 207 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 7e-07
Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 9/71 (12%)
Query: 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
ALE V L + LS G+++R+A ARLL+S I +LDE T+ALD A
Sbjct: 111 ALEAVGLAPLAHLP---------FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 726 NEAHLYEQIEA 736
A E I A
Sbjct: 162 AVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 8e-07
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 45/210 (21%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
T++ L+ + E + ++GPSGSGK+++LR + L G+I +
Sbjct: 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV-------------E 60
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ L + NG L + ++ R + + MV S ++P T
Sbjct: 61 GEQL-YHMPGRNGPLVPADEKHLRQM---RNKIGMVFQSFN---LFPHKT--------VL 105
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
+ P L + R ++ ++ L+ V L D + LS
Sbjct: 106 DNVTEAPVLVLG-----MARAEAE---KRAMELLDMVGLA---------DKADHMPAQLS 148
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALD 723
G+QQR+A AR L +P+++L DE TSALD
Sbjct: 149 GGQQQRVAIARALAMRPKVMLFDEVTSALD 178
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 63/245 (25%), Positives = 104/245 (42%), Gaps = 61/245 (24%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWS 551
+Q + +E+L L +A ++++S+ I + ++GPSG GK++ +R M L
Sbjct: 9 AQPQIKVENLNLWYGEKQA--LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 552 DGR--GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609
+ R GK++ E D + DVD +E+ R + G+ F Q+P
Sbjct: 67 NCRIEGKVSI-----EGEDIYEPDVDVVEL--------------RKNVGMVF--QKPNPF 105
Query: 610 LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669
S+ + Y ++ G+V + L + T D +K+
Sbjct: 106 PMSIYDNVAYGPRIH----GANKKDLDGVVENALRSAALWD--------ETSDRLKS--- 150
Query: 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
P L+ LS G+QQRL AR L KP+I+L DE TSALD + A
Sbjct: 151 -------PALS-----------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTAR 192
Query: 730 LYEQI 734
+ + I
Sbjct: 193 IEDLI 197
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 70/259 (27%), Positives = 108/259 (41%), Gaps = 58/259 (22%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR- 554
L +EDL + A ++ +S+ I EK ++GPSG GK++ LR M R
Sbjct: 46 LSVEDLDVYYGDDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 555 -GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
G + + D + V+ +E+ R G+ F Q P S+
Sbjct: 104 DGSVEL-----DGQDIYQDGVNLVEL--------------RKRVGMVF--QSPNPFPKSI 142
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI-KALEDVKL 672
R+ + Y P + GL+ L GR K + D+L+ ++L L
Sbjct: 143 RENISY-------GPRKHGDINTGLLARLL--------GR-DDKDAEDELVERSLRQAAL 186
Query: 673 -GYILPRL--NSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
+ RL N+L LS G+QQRL AR L P+++L+DE SALD +
Sbjct: 187 WDEVNDRLDDNALG--------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238
Query: 730 LYEQIE--AAGITYISVGH 746
+ + IE A T + V H
Sbjct: 239 IEDLIEELAEEYTVVVVTH 257
|
Length = 305 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 1e-06
Identities = 62/263 (23%), Positives = 102/263 (38%), Gaps = 80/263 (30%)
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
+ A Q++ I + L A +++++L I E E ++GPSG GK++ ++ +
Sbjct: 1 SIATEAVMKQEVYQINGMNLWYGQHHA--LKNINLSIPENEVTAIIGPSGCGKSTFIKTL 58
Query: 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606
+L + N +LT MN N +
Sbjct: 59 -----------------------------NLMIQMVP-NVKLTGEMNYNGSNIL------ 82
Query: 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLV-----PFLTSAQKLENV-------GRK 654
+ + K+ G+V PF S +NV G K
Sbjct: 83 -----------------KGKVDLVELRKNIGMVFQKGNPFPQSI--FDNVAYGPRIHGTK 123
Query: 655 SSKPSTDDLIKALEDVKL-GYILPRLNSLDTTYEWSSVLSL--GEQQRLAFARLLLSKPQ 711
+ K + + K+L+DV L + RL++ LSL G+QQRL AR L + P
Sbjct: 124 NKKKLQEIVEKSLKDVALWDEVKDRLHT--------QALSLSGGQQQRLCIARALATNPD 175
Query: 712 IVLLDESTSALDEANEAHLYEQI 734
++L+DE TSALD + + E I
Sbjct: 176 VLLMDEPTSALDPVSTRKIEELI 198
|
Length = 259 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 51/241 (21%), Positives = 94/241 (39%), Gaps = 64/241 (26%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
++ DLSL + + ++GP+G GK++LL+ A L + G + K +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPI----SML 69
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631
S + +R + LPQ G ++L+
Sbjct: 70 SS-------------------RQLARRLALLPQHHLTPEGITVRELV------------- 97
Query: 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDD---LIKALEDVKLGYILPRLNSLDTTYEW 688
+ G P+L+ +L S +D + +A+E ++ ++ R
Sbjct: 98 ---AYGRSPWLSLWGRL----------SAEDNARVNQAMEQTRINHLADRR--------- 135
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVG 745
+ LS G++QR A +L +VLLDE T+ LD ++ L ++ G T ++V
Sbjct: 136 LTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVL 195
Query: 746 H 746
H
Sbjct: 196 H 196
|
Length = 255 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE--ANE-AHLYEQIEAAGITYISVGH 746
LS G+QQR+A AR L P+++L DE TSALD E + + + G+T I V H
Sbjct: 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTH 194
|
Length = 240 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 479 KSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSG 538
KS+PT K S L + L K + ++D+S + E + ++G +G+G
Sbjct: 8 KSYPTYK-------GGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 539 KTSLLRAMAGLWSDGRGKIT 558
K++LLR +AG++ G +T
Sbjct: 61 KSTLLRLLAGIYPPDSGTVT 80
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 62/238 (26%), Positives = 98/238 (41%), Gaps = 52/238 (21%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++I DL K + ++ ++L I + +MGPSGSGK++LLR L
Sbjct: 1 MNKIEIRDL--KVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRL------ 52
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
I Y + R + + ++G+ M+ V L +R MV
Sbjct: 53 -IELYPEARVSGEVY-------------LDGQDIFKMD-----VIELRRRVQMVF----- 88
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL-GY 674
Q+ P P ++ L L N KS K + + ALE +L
Sbjct: 89 QIPNPI------PNLSIFENVALGLKL-------NRLVKSKKELQERVRWALEKAQLWDE 135
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
+ RL++ + LS G+QQRL AR L +P+++L DE T+ LD N A +
Sbjct: 136 VKDRLDAP------AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIES 187
|
Length = 250 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 55/208 (26%), Positives = 91/208 (43%), Gaps = 51/208 (24%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
D++L I ++E +GPSG GK++ LR ++ +V + + D+D +
Sbjct: 23 DINLDIYKREVTAFIGPSGCGKSTFLRCF--------NRMNDFVPNCKVKG--ELDIDGI 72
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+V S + N L R+ G+ F Q+P S+ + Y K G
Sbjct: 73 DVYSVDTNVVLLRA----KVGMVF--QKPNPFPKSIYDNVAY------------GPKLHG 114
Query: 638 LVPFLTSAQKLENVGRKS--SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
L + +KL+ + KS S ++L L+D ++ + LS G
Sbjct: 115 LA---KNKKKLDEIVEKSLTSVGLWEELGDRLKD----------SAFE--------LSGG 153
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALD 723
+QQRL AR + KP ++L+DE SALD
Sbjct: 154 QQQRLCIARAIAVKPTMLLMDEPCSALD 181
|
Length = 251 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 1e-06
Identities = 55/215 (25%), Positives = 77/215 (35%), Gaps = 85/215 (39%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
L ++ E LLV G +G+GKT+LLR +AGL G+I + D
Sbjct: 30 LDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI--------QIDGK-------- 73
Query: 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGL 638
G+ +R M L L+ L
Sbjct: 74 ---TATRGDRSRFMAYLGH------------LPGLKADL--------------------- 97
Query: 639 VPFLTSAQKLENV-------GRKSSK-PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
LEN+ GR++ + P + AL V L YE +
Sbjct: 98 -------STLENLHFLCGLHGRRAKQMPGS-----ALAIVGL-----------AGYEDTL 134
Query: 691 V--LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
V LS G+++RLA ARL LS + LLDE + LD
Sbjct: 135 VRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 53/215 (24%), Positives = 78/215 (36%), Gaps = 67/215 (31%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
L + L + + E + +MGPSG+GK++LL +AG G I
Sbjct: 12 HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIK--------------- 56
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
VN Q+ G PY +P S
Sbjct: 57 -----VNDQSHTG-----------------LAPYQ------------------RPVSMLF 76
Query: 634 KSAGLVPFLTSAQKLE---NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
+ L LT Q + + G K + + ++ A + V + L RL
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL---------PE 127
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS G++QR+A AR L+ I+LLDE SALD
Sbjct: 128 QLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 47/230 (20%), Positives = 76/230 (33%), Gaps = 66/230 (28%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L I +LT V DLSL + + E ++G +G+GKT+ L+ + G G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA- 59
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
Y+ + + + + PQ
Sbjct: 60 -YINGY----------------------SIRTDRKAARQSLGYCPQ-------------- 82
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR---KSSKPSTDDLIKALEDVKLGYI 675
DA L LT + L R +++ L + L
Sbjct: 83 -----------FDA-----LFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-- 124
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
+ N + LS G +++L+ A L+ P ++LLDE TS LD A
Sbjct: 125 -DKANKR------ARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPA 167
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 56/224 (25%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--GKITFYVKDREETDAH 570
+++++++++EK+ ++GPSG GK++ LR M L+ G+I + + +
Sbjct: 32 LKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH---PDNVNIL 88
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
+ +VD +EV + SM VF Q+P S+ + + Y VK S
Sbjct: 89 SPEVDPIEV-------RMRISM------VF---QKPNPFPKSIFENVAYGLRIRGVKRRS 132
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
+++EN R ++ ++VK D + +
Sbjct: 133 ------------ILEERVENALRNAA---------LWDEVK-----------DRLGDLAF 160
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS G+QQRL AR L + P+I+L DE TSALD A + E I
Sbjct: 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELI 204
|
Length = 265 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 1e-06
Identities = 60/255 (23%), Positives = 111/255 (43%), Gaps = 63/255 (24%)
Query: 497 KLLDIEDLTLK-TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
K+L++E+L K S + +S I + E + ++G +GSGK++ R + GL+ + G
Sbjct: 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG 62
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
K+ +D + ++N V+ L ++ MV +
Sbjct: 63 KVK---------------IDGELLTAEN---------------VWNLRRKIGMVFQNPDN 92
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
Q + T ++V A +EN G +++IK +++ L
Sbjct: 93 QFVGATVEDDV------------------AFGMENQG-----IPREEMIKRVDEALLA-- 127
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LY 731
+N LD + LS G++QR+A A ++ +P+I++LDESTS LD ++
Sbjct: 128 ---VNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 732 EQIEAAGITYISVGH 746
E E +T +S+ H
Sbjct: 185 EIKEKYQLTVLSITH 199
|
Length = 277 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 688 WS---SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA---HLYEQIEAAGITY 741
W + S GEQQR+ AR ++ I+LLDE T++LD AN L + +A G
Sbjct: 143 WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAAL 202
Query: 742 ISVGH 746
I + H
Sbjct: 203 IGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 2e-06
Identities = 56/253 (22%), Positives = 95/253 (37%), Gaps = 70/253 (27%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L+IE +T KA V ++S + E ++GP+G+GKT+ R + GL G+IT
Sbjct: 3 LEIEGVTKSFGDKKA--VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP-QRPYMVLGSLRQQL 617
+ NG +N G +LP +R ++ QL
Sbjct: 61 W-------------------------NGGPLSQEIKNRIG--YLPEERGLYPKMTVEDQL 93
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
Y L+ + + + ++ LE V G
Sbjct: 94 KY---------------------LAE----LKGMPKAEIQKKLQAWLERLEIV--GKKTK 126
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QI 734
++ LS G QQ++ F ++ +P++++LDE S LD N L + ++
Sbjct: 127 KIKE----------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFEL 176
Query: 735 EAAGITYISVGHR 747
+ G T I HR
Sbjct: 177 KEEGATIIFSSHR 189
|
Length = 300 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L++ L+L + + D+SL I E ++V+GPSG GKT+LL +AG + RG I
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63
|
Length = 259 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 2e-06
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR 564
+ + L + E L ++GPSGSGK++LLR + GL G++ +D
Sbjct: 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI 64
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G++QR+A AR L + P+I+L DE+TSALD + E + G+T + + H
Sbjct: 142 LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200
|
Length = 339 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
T ++D+SL + + E + ++GPSG GKT+LLR +AGL G I
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 59/241 (24%), Positives = 97/241 (40%), Gaps = 64/241 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
V ++SL + E E ++G SG+GKT+L + +AG+ G++ V D VD
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW--------VD 351
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL-IYPTWTEEVKPASDAAK 634
+ R + Y+ G L Q+ +YP T + +
Sbjct: 352 MTK----------PGPDGRGR-------AKRYI--GILHQEYDLYPHRT----VLDNLTE 388
Query: 635 SAGL-VPFLTSAQK----LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
+ GL +P + K L+ VG ++ K IL +
Sbjct: 389 AIGLELPDELARMKAVITLKMVG--------------FDEEKAEEILDKY---------P 425
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
LS GE+ R+A A++L+ +P+IV+LDE T +D + + I E T+I V
Sbjct: 426 DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485
Query: 746 H 746
H
Sbjct: 486 H 486
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSAL--DEANE-AHLYEQIEAAGITYISVGHR 747
LS G+Q+RL AR L + P+++LLDE + L +E E A L ++ GIT + V H
Sbjct: 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHD 202
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-06
Identities = 26/60 (43%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747
+LS G++QRLA AR LL I++LDE+TSALD +E + +E G T + + HR
Sbjct: 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHR 527
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-06
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
LS G+QQRL AR + +P+++LLDE SALD + + E I
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELIT 200
|
Length = 260 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS GE+QR++ R L P+++LLDE TSALDE+N+ ++ E I
Sbjct: 138 LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEII 180
|
Length = 225 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 3e-06
Identities = 39/123 (31%), Positives = 54/123 (43%), Gaps = 23/123 (18%)
Query: 638 LVPFLTSAQKLENVG---RKSSKPSTD---DLIKALEDVKLGYILPRLNSLDTTYEWSSV 691
L P L +NV R P D + AL+ V LG D +
Sbjct: 90 LFPHLKV---EDNVAFGLRAQKMPKADIAERVADALKLVGLG---------DAAAHLPAQ 137
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-----AGITYISVGH 746
LS G QQR+A AR + +P ++LLDE SALD A++ E+I A +T + V H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 747 RRT 749
+
Sbjct: 198 DQD 200
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 3e-06
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563
+ +SL + E E + ++G +G+GKT+LL+ + GL G I F +D
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRD 63
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563
+ +SL I E E ++GPSG GKT+LLR +AG + G+I KD
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKD 63
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 4e-06
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS G +QR+A AR L P ++LLDE SALD L E++
Sbjct: 132 LSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEEL 174
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
TL DLS +N E L + GP+G+GKT+LLR +AGL
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGL 51
|
Length = 209 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 4e-06
Identities = 59/226 (26%), Positives = 94/226 (41%), Gaps = 59/226 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--GKITFYVKDREETDAH 570
V+D+S+ E ++GPSG GK+++LR+ M L R GKI ++TD +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILL-----DDTDIY 74
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
VD + + R G+ F P+ + IY
Sbjct: 75 DRGVDPVSI--------------RRRVGMVFQKPNPFPAMS------IYDN--------- 105
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL-GYILPRLNSLDTTYEWS 689
+ + KL GR + + + + +L+ V L + RL S +
Sbjct: 106 -----------VIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRLKSN------A 146
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
LS G+QQRL AR + KP+++L+DE SALD + + E IE
Sbjct: 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIE 192
|
Length = 252 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-06
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS GE++R+A RLLL KP ++LLDE T+ LD
Sbjct: 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 4e-06
Identities = 53/230 (23%), Positives = 96/230 (41%), Gaps = 49/230 (21%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
Q ++ +E L +A DL+ I+ E + ++GPSGSGK++LLR ++GL
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLN--IHHGEMVALLGPSGSGKSTLLRHLSGL------ 53
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV--LGSL 613
+ + +H L + G L R + ++ ++ Q+ +V L L
Sbjct: 54 -----ITGDKSAGSHI----ELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVL 104
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLG 673
LI + G PF + ++ ++AL V +
Sbjct: 105 ENVLI---------------GALGSTPFWRTCF------SWFTREQKQRALQALTRVGMV 143
Query: 674 YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ ++ S LS G+QQR+A AR L+ + +++L DE ++LD
Sbjct: 144 HF---------AHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLD 184
|
Length = 262 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-06
Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD-EANEAHLYEQIEAAGITY----ISV 744
VLS GE+ RL A+LLL P ++LLDE T+ LD E+ EA +E A + + + V
Sbjct: 438 GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA-----LEEALLDFEGTVLLV 492
Query: 745 GHRRTLYDF 753
H R D
Sbjct: 493 SHDRYFLDR 501
|
Length = 530 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+ +SL + + E ++++GPSGSGK++LLR + GL G IT
Sbjct: 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
|
Length = 240 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 20/32 (62%), Positives = 26/32 (81%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQR+ AR+L + P+I+LLDE TSALD
Sbjct: 149 LSGGQQQRVCIARVLATSPKIILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 5e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
LS G++QR+ AR L P++++ DE SALD + +A L + E G+TY+ + H
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISH 168
|
Length = 268 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 5e-06
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 510 TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
SK +++D S V+ E +LV+G GSG ++LL+A+A
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALAN 55
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566
+ L + E L ++G SGSGK++LLR + GL +G+I +D +
Sbjct: 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQ 74
|
Length = 263 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-06
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL 707
++NVG D ++AL V L D EW + LS G++QR+A AR L+
Sbjct: 99 IDNVGLGLKGQWRDAALQALAAVGLA---------DRANEWPAALSGGQKQRVALARALI 149
Query: 708 SKPQIVLLDESTSALD 723
+P ++LLDE ALD
Sbjct: 150 HRPGLLLLDEPLGALD 165
|
Length = 257 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 8e-06
Identities = 59/226 (26%), Positives = 101/226 (44%), Gaps = 59/226 (26%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ ++DLT K ++ ++S I+ + + ++G +GSGK++LL A L + G I
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGDI- 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL- 617
+D + NS + R + GV +PQ+ ++ G+ R+ L
Sbjct: 61 --------------QIDGVSWNS------VPLQKWRKAFGV--IPQKVFIFSGTFRKNLD 98
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
Y W++E + K A E VG KS +I+ +L ++L
Sbjct: 99 PYGKWSDE-----EIWKVA------------EEVGLKS-------VIEQFPG-QLDFVL- 132
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+D VLS G +Q + AR +LSK +I+LLDE ++ LD
Sbjct: 133 ----VDGGC----VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLD 170
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
L LS +N E + + GP+G+GKTSLLR +AGL
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGL 50
|
Length = 204 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 8e-06
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
LS G+QQRL AR L +P+I+LLDE TSALD A + + I+
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQ 226
|
Length = 286 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 9e-06
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G++QR+A A +L +P I++LDE+TS LD + E + E GIT +S+ H
Sbjct: 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITH 199
|
Length = 279 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 9e-06
Identities = 47/215 (21%), Positives = 85/215 (39%), Gaps = 64/215 (29%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
K +V +SL + + E + ++GP+G+GKT+ + GL GKI
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL------------ 59
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631
D ++ M+ R G+ +LPQ S+ ++
Sbjct: 60 ---DGQDITKLPMH-------KRARLGIGYLPQEA-----SIFRK--------------- 89
Query: 632 AAKSAGLVPFLTSAQKLENV--GRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEW 688
LT + + V R SK ++ ++ LE+ + ++
Sbjct: 90 ----------LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSK--------- 130
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+S LS GE++R+ AR L + P+ +LLDE + +D
Sbjct: 131 ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVD 165
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
++ +L L IN E L ++GPSG GKT++LR +AG + G+I
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
|
Length = 375 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 61/233 (26%), Positives = 99/233 (42%), Gaps = 56/233 (24%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDREETDAHTSDVDSL 577
+SL EKE ++GPSG GK++ LR + + D KIT +K E + + S +D +
Sbjct: 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIK-FEGQNIYGSKMDLV 81
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
E+ R G+ F Q+P S+ + Y K AG
Sbjct: 82 EL--------------RKEVGMVF--QQPTPFPFSVYDNVAY------------GLKIAG 113
Query: 638 LVPFLTSAQKLENVGRKSS--KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
+ Q++E ++++ K + D+L + + S G
Sbjct: 114 VKDKELIDQRVEESLKQAAIWKETKDNLDRN----------------------AQAFSGG 151
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 746
+QQR+ AR L +P++VLLDE TSALD + + + E + T+I V H
Sbjct: 152 QQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204
|
Length = 251 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
LS G+QQRL AR L +P+I+L+DE TSALD A+ A +
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARI 187
|
Length = 252 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 1e-05
Identities = 64/296 (21%), Positives = 125/296 (42%), Gaps = 65/296 (21%)
Query: 458 SSSSKNLSEPLEKICLTYCSVKSFPTS--KCNGALSPEKSQKLLDIEDLTLKTPTSKATL 515
+S ++N +E++ Y + S T+ + N +S S+ + ED+ L+ +
Sbjct: 1193 ASKAENSLNSVERVG-NYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPV 1251
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ LS ++ E + V+G +G+GK+S+L A+ + +G+I + D + +D+
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM--IDDCDVAKFGLTDL- 1308
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
R + +PQ P + G++R
Sbjct: 1309 --------------------RRVLSIIPQSPVLFSGTVR--------------------- 1327
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN-SLDT-TYEWSSVLS 693
+ PF S+ + DL +ALE + ++ R LD E S
Sbjct: 1328 FNIDPF--------------SEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFS 1373
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGHR 747
+G++Q L+ AR LL + +I++LDE+T+++D ++ + I E T + + HR
Sbjct: 1374 VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHR 1429
|
Length = 1495 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 49/225 (21%), Positives = 83/225 (36%), Gaps = 62/225 (27%)
Query: 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590
++GP+GSGK++LLR +AG G + G
Sbjct: 32 LLGPNGSGKSTLLRLLAGALRPDAGTVDL-------------------------AGVDLH 66
Query: 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650
++R +R + R L+ V + G +P
Sbjct: 67 GLSRRAR--------------ARRVALVEQDSDTAVPLTVRDVVALGRIPHR-------- 104
Query: 651 VGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS 708
+ D + +AL +L ++ R + T LS GE+QR+ AR L
Sbjct: 105 -SLWAGDSPHDAAVVDRALARTELSHLADR--DMST-------LSGGERQRVHVARALAQ 154
Query: 709 KPQIVLLDESTSALDEANE---AHLYEQIEAAGITYISVGHRRTL 750
+P+++LLDE T+ LD + L ++ A G+T ++ H L
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNL 199
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 26/115 (22%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGK 556
L+I+DL + +++ ++L I + E +MGP+GSGK++L + + G + G+
Sbjct: 1 LEIKDLHVSV--GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG 611
I F K + TD + R G+F Q P + G
Sbjct: 59 ILF--KGEDITDLPPEE--------------------RARLGIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE+QR+A R LL+ P+++L+DE ++LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISVGHR 747
LS GE++R++ A L+S P ++ LDE TS LD ++ + ++ G T I H+
Sbjct: 112 LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQ 170
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
E+++ P + L RD+S I + E + + GPSG+GK++LL+ + G RGKI
Sbjct: 4 FENVSKAYPGGREAL-RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVN 62
Query: 561 VKD 563
D
Sbjct: 63 GHD 65
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+++ +L+ + A + D+SL + + E ++GP+G+GKT+L++ + GL G+I
Sbjct: 1 IEVRNLSKRYGKKTA--LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIK 58
Query: 559 FYVKD 563
KD
Sbjct: 59 VLGKD 63
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/56 (42%), Positives = 32/56 (57%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569
T++ DLSL I E L ++G SG GKT+LLRA+AG + DR+ T A
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA 74
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
LS GEQQ LA AR L+S+P+++LLDE + L
Sbjct: 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGL 163
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 63/239 (26%), Positives = 98/239 (41%), Gaps = 68/239 (28%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--GKITFYVKDREETDAHTS 572
D+S+ I E + ++GPSG GK++ LR M L R G++TF + + +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF-----RGKNVYDA 111
Query: 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDA 632
DVD + + R G+ F Q+P S+ + Y + D
Sbjct: 112 DVDPVAL--------------RRRIGMVF--QKPNPFPKSIYDNVAYGLKIQGYDGDID- 154
Query: 633 AKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED-VKLGYILPRLNSLDTTYEWSSV 691
+++E R++ AL D VK + LD SS
Sbjct: 155 -------------ERVEESLRRA----------ALWDEVK--------DQLD-----SSG 178
Query: 692 LSL--GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 746
L L G+QQRL AR + P+++L+DE SALD + + + IE A T + V H
Sbjct: 179 LDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 53/236 (22%), Positives = 95/236 (40%), Gaps = 63/236 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA-HTSDV 574
+ D++L + + E L+++G +GSGK+++ + M L GK+ YV + +D + D+
Sbjct: 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV--YVDGLDTSDEENLWDI 83
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
RN G+ F Q P Q++ E+V
Sbjct: 84 -------------------RNKAGMVF--QNP-------DNQIVATIVEEDV-------- 107
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
A EN+G + I+ D L ++ + +LS
Sbjct: 108 ----------AFGPENLGIPPEE------IRERVD----ESLKKVGMYEYRRHAPHLLSG 147
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAGITYISVGH 746
G++QR+A A +L +P+ ++ DE T+ LD + + I+ GIT I + H
Sbjct: 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGHR 747
LS G++ R+A R LL++P+ +LLDE S LD A ++ ++ AAGI + V H
Sbjct: 135 LSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194
Query: 748 RTLYDFHKRVLRISTVDQN 766
RV+ ++ +QN
Sbjct: 195 LQDVPAGSRVIEMAQWEQN 213
|
Length = 213 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
D +E + LS G+QQR+ AR+L KP ++LLDE TSALD
Sbjct: 140 DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
LS G++QR+ AR L + P+++L DE+TSALD
Sbjct: 141 LSGGQKQRVGIARALANNPKVLLCDEATSALDPET 175
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + +P+++LLDE TSALD
Sbjct: 169 LSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200
|
Length = 272 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 19/32 (59%), Positives = 25/32 (78%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQR+A AR L +P+++L DE TSALD
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALD 184
|
Length = 256 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L I L A + D++L + E L+V+GPSG GKT+LL +AG G I
Sbjct: 1 MLQISHLYADYGGKPA--LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 558 TF 559
T
Sbjct: 59 TL 60
|
Length = 255 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 28/83 (33%), Positives = 47/83 (56%), Gaps = 15/83 (18%)
Query: 657 KPST--DDLIKALEDVKLGYIL--PRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQI 712
+P T +D++ AL+ V+ G+++ P LS GE QR+ AR LL++PQ+
Sbjct: 93 RPGTKKEDILPALKRVQAGHLIDAPMQK-----------LSGGETQRVLLARALLNRPQL 141
Query: 713 VLLDESTSALDEANEAHLYEQIE 735
++LDE T +D + LY+ I+
Sbjct: 142 LVLDEPTQGVDVNGQVALYDLID 164
|
Length = 251 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 688 WS---SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI---EAAGITY 741
WS + S GEQQR+ AR + I+LLDE T++LD N A + E I +A G
Sbjct: 146 WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAAL 205
Query: 742 ISVGH 746
+ + H
Sbjct: 206 VGIFH 210
|
Length = 235 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 636 AGLVPFLTSAQKLENV---GRKSSKPSTDDLIKALEDVKL-GYI-LPRLNSLDTTYEWSS 690
G+ LT+ LEN+ R + L +AL V L G+ +P
Sbjct: 83 PGIKTELTA---LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVP-----------VR 128
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN----EAHLYEQIEAAGI 739
LS G+Q+R+A ARL L++ + +LDE +A+D+ EA L + E G+
Sbjct: 129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGM 181
|
Length = 204 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G++QR+A AR L S P+++L DE+TSALD
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 51/233 (21%), Positives = 90/233 (38%), Gaps = 78/233 (33%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L +E L++ KA + DLSL ++ E +++GP+G+GKT+++ + G G +
Sbjct: 2 ILYLEGLSVSFDGFKA--LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV 59
Query: 558 TFYVKDREETDAH------------TSDV-DSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604
F D H V ++L V +N+ EL ++ R+ + VF
Sbjct: 60 LFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVF-ENL--EL--ALPRD-KSVF---- 109
Query: 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI 664
SL +L + E K +
Sbjct: 110 ------ASLFFRL-----SAEEKDRIE--------------------------------- 125
Query: 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDE 717
+ LE + L + L + +LS G++Q L LL+ P+++LLDE
Sbjct: 126 EVLETIGLA---DEADRL------AGLLSHGQKQWLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 659 STDDLIKALEDV-KLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLD 716
S + + +A + +I N LDT E +LS G++QR+A AR LL I++LD
Sbjct: 446 SREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILD 505
Query: 717 ESTSALDEANE 727
E+TSALD +E
Sbjct: 506 EATSALDTESE 516
|
Length = 582 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 25/63 (39%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAGITYIS 743
+ S LS G++QR+A AR L S P+++L DE+TSALD A + E ++ G+T +
Sbjct: 137 YPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILL 196
Query: 744 VGH 746
+ H
Sbjct: 197 ITH 199
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
Query: 482 PTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS 541
P +K AL+P LL+I +LT A V D+SL I + E ++G SG GK++
Sbjct: 8 PQAKTRKALTP-----LLEIRNLTKSFDGQHA--VDDVSLTIYKGEIFALLGASGCGKST 60
Query: 542 LLRAMAGLWSDGRGKI 557
LLR +AG G+I
Sbjct: 61 LLRMLAGFEQPTAGQI 76
|
Length = 377 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+D+ DL+++ T++ + L + E + ++GP+G+GKT+LLRA+ G + G +
Sbjct: 4 IDVSDLSVEF--GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 559 FYVKDREETDAHT 571
D E A
Sbjct: 62 VAGDDVEALSARA 74
|
Length = 402 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 5e-05
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--------EAAGITYIS 743
LS G++QR+A R ++ +P++ L+DE S LD A L Q+ + G T I
Sbjct: 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLD----AKLRVQMRAELKRLQQRLGTTTIY 186
Query: 744 VGH 746
V H
Sbjct: 187 VTH 189
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 5e-05
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG------RGKITFYVKDREETDA 569
V+++++ I + + ++GPSG GKT+LLR++ + +D GKI F + D
Sbjct: 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRM-NDHIPGFRVEGKIYF-----KGQDI 72
Query: 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPA 629
+ +D E R G+ F Q+P S+ + + VK
Sbjct: 73 YDPQLDVTEY--------------RKKVGMVF--QKPTPFPMSIYDNVAFGPRIHGVK-- 114
Query: 630 SDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
S KL+ + +S K + AL D + LN +
Sbjct: 115 --------------SKHKLDRIVEESLKKA------ALWD----EVKSELN------KPG 144
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS G+QQRL AR L +P+++LLDE TSALD
Sbjct: 145 TRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (108), Expect = 5e-05
Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 60/226 (26%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
++ DL+L I + +GPSG GK++ LR + L D E +H ++
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQL------------NDLIEGTSHEGEI 144
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
L N+++ +++ R G+ F Q+P S+ + Y P ++
Sbjct: 145 YFLGTNTRSK--KISSLELRTRIGMVF--QKPTPFEMSIFDNVAY-------GPRNNG-- 191
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPST------DDLIKALEDVKLGYILPRLNSLDTTYEW 688
+ + LE + KS K + DDL KA
Sbjct: 192 -------INDRKILEKIVEKSLKSAALWDEVKDDLDKA---------------------- 222
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+ LS G+QQRL AR + +P+++L+DE TSALD A + E I
Sbjct: 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELI 268
|
Length = 329 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 5e-05
Identities = 56/232 (24%), Positives = 87/232 (37%), Gaps = 63/232 (27%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGK 556
L I+DL + +++ ++L + + E +MGP+GSGK++L + +AG S G
Sbjct: 1 LKIKDLHVSV--EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT 58
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
I F D+ LE + R G+F Q P
Sbjct: 59 ILF----------KGQDLLELEPD------------ERARAGLFLAFQYP---------- 86
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYIL 676
EE+ S + FL SA R D +K L+
Sbjct: 87 -------EEIPGVS-------NLEFLRSALNARRSARGEEPLDLLDFLKLLKAK------ 126
Query: 677 PRLNSLDTTYEWS--SV---LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
L L E+ SV S GE++R ++ L +P++ +LDE S LD
Sbjct: 127 --LALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 5e-05
Identities = 52/237 (21%), Positives = 92/237 (38%), Gaps = 63/237 (26%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG--LWS 551
K++ +L+I++L ++ +++ L+L IN+ E +MGP+GSGK++L + +AG +
Sbjct: 3 KNKPILEIKNL--HASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK 60
Query: 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG 611
G I F + + + R G+F Q P + G
Sbjct: 61 ILEGDILFKGESILDLEPE----------------------ERAHLGIFLAFQYPIEIPG 98
Query: 612 SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671
FL A N RK D ++ LE
Sbjct: 99 VSNAD------------------------FLRLAY---NSKRKFQGLPELDPLEFLE--- 128
Query: 672 LGYILPRLN--SLDTTYEWSSV---LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
I +L +D ++ +V S GE++R ++ L ++ +LDE+ S LD
Sbjct: 129 --IINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLD 183
|
Length = 252 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 18/32 (56%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + +P ++L+DE TSALD
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177
|
Length = 249 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 5e-05
Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 68/251 (27%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
++R +++ I+ E + ++G +G+GK+SL + F + + E + +
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGL------------FRINESAEGEIIIDGL 1348
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
+ ++ ++ ++T +PQ P + GSLR L
Sbjct: 1349 NIAKIGLHDLRFKIT-----------IIPQDPVLFSGSLRMNLD---------------- 1381
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL-GYILPRLNSLD-TTYEWSSVL 692
PF S+ S +++ ALE L ++ + LD E L
Sbjct: 1382 -----PF--------------SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALD-EAN---EAHLYEQIEAAGITYISVGHR- 747
S+G++Q + AR LL K +I++LDE+T+A+D E + ++ + Q E T +++ HR
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC--TVLTIAHRL 1480
Query: 748 RTLYDFHKRVL 758
T+ D+ RV+
Sbjct: 1481 NTIMDY-TRVI 1490
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 6e-05
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN----EAHLYEQIEAAGITYISVGH 746
LS G++QR+A AR L +P+++LLDE ALD L + + G+T + V H
Sbjct: 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTH 196
|
Length = 345 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 55/265 (20%), Positives = 110/265 (41%), Gaps = 57/265 (21%)
Query: 496 QKLLDIEDLTLKT-----PTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
+KL DI+ + K T K + +DL+ + E + +G SG GK+++L+ + L
Sbjct: 375 KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERL 434
Query: 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609
+ G I D+H N +++N + RS + + Q P +
Sbjct: 435 YDPTEGDIII-------NDSH---------NLKDINLKWWRSK------IGVVSQDPLLF 472
Query: 610 LGSLRQQLIYPTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668
S++ + Y ++ ++++ S+ G + N R +D+ +
Sbjct: 473 SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQ--ENKNKRNSCRAKCAGDLNDMSNTTD 530
Query: 669 DVKLGYILPRLNSLDTT---------------------YEW-----SSVLSLGEQQRLAF 702
+L + ++ + YE +S LS G++QR++
Sbjct: 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISI 590
Query: 703 ARLLLSKPQIVLLDESTSALDEANE 727
AR ++ P+I++LDE+TS+LD +E
Sbjct: 591 ARAIIRNPKILILDEATSSLDNKSE 615
|
Length = 1466 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL----YEQIEAAG 738
D + +L+ G++QR+A AR L+ +P+I++ DE+ ++LD + + L E E G
Sbjct: 141 DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 739 ITYISVG 745
I+YI V
Sbjct: 201 ISYIYVT 207
|
Length = 267 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563
+ D++L + + ++GPSGSGK++LLR +AGL G+I +D
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQD 63
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 62/255 (24%), Positives = 93/255 (36%), Gaps = 83/255 (32%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
LS + E L ++GP+G+GK++LL MAG+ S G G I F + E A
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-GSGSIQFAGQPLEAWSAT-------- 68
Query: 579 VNSQNMNGELTRS---MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
EL R +++ F +P Y+ L
Sbjct: 69 --------ELARHRAYLSQQQTPPFAMPVWHYLTLH------------------------ 96
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
P T + L +V AL+D KLG +L S G
Sbjct: 97 ---QPDKTRTELLNDVAGAL----------ALDD-KLGRSTNQL-------------SGG 129
Query: 696 EQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVG 745
E QR+ A ++L Q++LLDE ++LD A ++ L + A G+ +
Sbjct: 130 EWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSS 189
Query: 746 H--RRTLYDFHKRVL 758
H TL H+ L
Sbjct: 190 HDLNHTLRHAHRAWL 204
|
Length = 248 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 7e-05
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 13/89 (14%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVG 745
S LS G ++R+A AR + P+++ LDE TS LD + + E I +A G+T I V
Sbjct: 144 SELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVT 203
Query: 746 HR----RTLYD-----FHKRVLRISTVDQ 765
H T+ D +V+ T ++
Sbjct: 204 HDLDSLLTIADRVAVLADGKVIAEGTPEE 232
|
Length = 263 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 7e-05
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA-----GITYIS 743
SS+LS G QQ++ AR L P++++LDE T +D +A +Y I + IS
Sbjct: 102 SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLIS 161
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 7e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G +QR+A AR L +P+++LLDE ALD +L E++ E +T + V H
Sbjct: 115 LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
+AL+ V + L D YE ++ LS G++QR+A A +L P +++LDE+TS LD
Sbjct: 125 EALKQVDM------LERAD--YEPNA-LSGGQKQRVAIAGVLALNPSVIILDEATSMLDP 175
Query: 725 ANEAHLYEQI----EAAGITYISVGH 746
+L + + IT IS+ H
Sbjct: 176 DARQNLLDLVRKVKSEHNITIISITH 201
|
Length = 269 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 8e-05
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
S LS GE+QR+A AR L++ P++VL DE T LD N +++
Sbjct: 143 PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQ 186
|
Length = 233 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 8e-05
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 61/228 (26%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--GKITFYVKDREETDAH 570
+ D+ L I EK +GPSG GK++ LR M R GKIT + D +
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL-----DGEDIY 89
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
+D +E+ R G+ F Q+P S+ + + Y
Sbjct: 90 DPRLDVVEL--------------RARVGMVF--QKPNPFPKSIYENVAY----------- 122
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA--LEDVKLGYILPRLNSLDTTYEW 688
+ GL S +L+ + S L KA E+VK RL+ T
Sbjct: 123 -GPRIHGLAR---SKAELDEIVETS-------LRKAGLWEEVK-----DRLHEPGTG--- 163
Query: 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736
LS G+QQRL AR + P+++L+DE SALD A + E I+
Sbjct: 164 ---LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE 208
|
Length = 267 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 8e-05
Identities = 54/209 (25%), Positives = 85/209 (40%), Gaps = 56/209 (26%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGRGKITFYVKDREETDAHTSDV 574
D+ L I K+ + +GPSG GK++LLR M L + + +DR D+
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDS----- 92
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634
++NS + R G+ F QRP S+ + + + K D
Sbjct: 93 ---QINSVKL---------RRQVGMVF--QRPNPFPKSIYENIAFAPRANGYKGNLD--- 135
Query: 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSL 694
+ +E+ R+++ E+VK D E + LS
Sbjct: 136 -----------ELVEDSLRRAA---------IWEEVK-----------DKLKEKGTALSG 164
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALD 723
G+QQRL AR + KP ++L+DE SALD
Sbjct: 165 GQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 659 STDDLIKALEDVKLGYILPRL-NSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLD 716
S + + +ALE V+L + L + L T E + LS+G++Q LA AR+L+ PQI++LD
Sbjct: 442 SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILD 501
Query: 717 ESTSALDEANE 727
E+T+ +D E
Sbjct: 502 EATANIDSGTE 512
|
Length = 592 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 9e-05
Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 746
LS G+QQRL AR L KP+++LLDE TSALD + + E ++ + ++ I V H
Sbjct: 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
|
Length = 246 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 55/225 (24%), Positives = 88/225 (39%), Gaps = 60/225 (26%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG----RGKITFYVKDREETDAH 570
LV+DL+L + E L ++G SGSGK+ A+ GL G G+I
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILL----------- 49
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPAS 630
D + ++ G ++ +N R F P L ++ I
Sbjct: 50 ----DGRPLLPLSIRGRHIATIMQNPRTAF----NP---LFTMGNHAI------------ 86
Query: 631 DAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
+ +S G K SK + +++ALE V L P + Y +
Sbjct: 87 ETLRSLG----------------KLSKQARALILEALEAVGL----PDPEEVLKKYPFQ- 125
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
LS G QR+ A LL +P ++ DE T+ LD N+A + + +
Sbjct: 126 -LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLR 169
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+++E+L+ L++D+SL IN + + ++G +G+GK++LL+ +AG G +T
Sbjct: 1 IELENLSKTY--GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH 746
LS G ++R+A AR L P+++L DE T+ LD + + I + G+T I V H
Sbjct: 137 LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTH 195
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 17/63 (26%), Positives = 38/63 (60%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++++ +E ++ + P + ++D+S + E E + ++G +GSGK++L + + GL G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 556 KIT 558
IT
Sbjct: 63 TIT 65
|
Length = 279 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733
LS G++QR++ AR + S I LLD+ SA+D H++E
Sbjct: 128 LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 51/235 (21%), Positives = 96/235 (40%), Gaps = 60/235 (25%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
V+D SL I E E ++MG SGSGK++++R + L RG++ +D
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVL---------------ID 88
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
+++ ++ + EL R + R + F +S
Sbjct: 89 GVDI-AKISDAEL-REVRRKKIAMVF--------------------------------QS 114
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
L+P +T + + + KAL+ ++ ++ + + + LS G
Sbjct: 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALR------QVGLENYAHSYPDELSGG 168
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750
+QR+ AR L P I+L+DE+ SALD + ++ + + H+RT+
Sbjct: 169 MRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDE-----LVKLQAKHQRTI 218
|
Length = 400 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + KP ++L+DE TSALD
Sbjct: 148 LSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 1e-04
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITY--ISVGH 746
LS G+QQRL AR L +P+++L+DE SALD + E I Y I V H
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTH 206
|
Length = 253 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 57/241 (23%), Positives = 96/241 (39%), Gaps = 56/241 (23%)
Query: 510 TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569
S + ++++ I + +++G G GK+SLL A+ G GK+ + K+ E
Sbjct: 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSF 70
Query: 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPA 629
E TRS NR S V + Q+P+++ ++ + + + +
Sbjct: 71 -----------------EATRSRNRYS--VAYAAQKPWLLNATVEENITFGS-------- 103
Query: 630 SDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
PF + Q+ + V S DL+ + ++G E
Sbjct: 104 ----------PF--NKQRYKAVTDACSLQPDIDLLPFGDQTEIG-------------ERG 138
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749
LS G++QR+ AR L IV LD+ SALD HL + + GI +RT
Sbjct: 139 INLSGGQRQRICVARALYQNTNIVFLDDPFSALD----IHLSDHLMQEGILKFLQDDKRT 194
Query: 750 L 750
L
Sbjct: 195 L 195
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 2e-04
Identities = 54/229 (23%), Positives = 94/229 (41%), Gaps = 58/229 (25%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGR--GKITFYVKDREE 566
K +++++++ E++ ++GPSG GK++LLRA M + S R G + D E
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLL---DNEN 72
Query: 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV 626
+ DV +L R G+ F P+
Sbjct: 73 IYSPNLDVVNL----------------RKRVGMVFQQPNPF------------------P 98
Query: 627 KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY 686
K D + T+ +L+ V KS + + ++VK D +
Sbjct: 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAA-----LWDEVK-----------DNLH 142
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
+ LS G+QQRL AR+L +P+++L+DE SALD + + E ++
Sbjct: 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ 191
|
Length = 251 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR L +P ++L+DE TSALD
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
SLG +QRL A LL P +++LDE T+ LD
Sbjct: 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 56/225 (24%), Positives = 91/225 (40%), Gaps = 50/225 (22%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ ++DL+ TSKA + +S+ I + ++GPSG GK++ ++ + + S+ G
Sbjct: 8 IKVKDLSFYYNTSKA--IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRI-SELEGP-- 62
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
VK D ++ +N +NR R + + QRP S+ + +
Sbjct: 63 --VKVEGVVDFFGQNIYDPRIN-----------INRLRRQIGMVFQRPNPFPMSIYENVA 109
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
Y P +D L + SA K ++ L LG
Sbjct: 110 YGVRISAKLPQAD------LDEIVESALK--------GAALWQEVKDKLNKSALG----- 150
Query: 679 LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR L KP+++L+DE SALD
Sbjct: 151 -------------LSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
|
Length = 259 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA----GITYISVGH 746
LS G++QR+A A + +P+I++LDE+TS LD L + I+ +T IS+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITH 199
|
Length = 279 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 55/253 (21%), Positives = 94/253 (37%), Gaps = 79/253 (31%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L++EDL++K T V+D+S + E + + G +G+G++ L+ A++GL G+I
Sbjct: 257 VLEVEDLSVK-DRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI 315
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
KD + G L+ R G+ ++P+ R
Sbjct: 316 LLNGKD--------------------VLGRLSPRERRR-LGLAYVPED--------RHG- 345
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV-------GRKSSKPSTD--------- 661
GLV L+ A EN+ S D
Sbjct: 346 ------------------HGLVLDLSLA---ENLVLGRHDKKPFSRGGFLDRRAIRKFAR 384
Query: 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA 721
+LI+ DV+ SL S G QQ+L AR L +P +++ + T
Sbjct: 385 ELIEE-FDVRAPSPDAPARSL----------SGGNQQKLILARELARRPDLLIAAQPTRG 433
Query: 722 LDEANEAHLYEQI 734
LD ++E++
Sbjct: 434 LDVGAIEFIHERL 446
|
Length = 501 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
D E + LS G+QQRL AR + P ++L+DE SALD + A + E I
Sbjct: 138 DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELI 189
|
Length = 250 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 14/65 (21%)
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGI-------TYIS 743
VLS GE+ R+ F +L++ KP ++++DE T+ +D E IE+ + T I
Sbjct: 438 VLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD-------MESIESLNMALEKYEGTLIF 490
Query: 744 VGHRR 748
V H R
Sbjct: 491 VSHDR 495
|
Length = 530 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 11/78 (14%)
Query: 495 SQKLLDIEDLT---------LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545
+ LL++++L K KA V +S I E E L ++G SG GK++L R
Sbjct: 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKA--VDGVSFSIKEGETLGLVGESGCGKSTLGRL 58
Query: 546 MAGLWSDGRGKITFYVKD 563
+ GL G+I F KD
Sbjct: 59 ILGLEEPTSGEILFEGKD 76
|
Length = 268 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
K ++ D+SL + + E +GP+G+GKT+ ++ + GL G+ITF K ++
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 572 SDVDSLEVNSQNMNGELT 589
+ +L + + LT
Sbjct: 72 RRIGAL-IEAPGFYPNLT 88
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 3e-04
Identities = 49/214 (22%), Positives = 86/214 (40%), Gaps = 60/214 (28%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHT 571
K +V D+SL +N E + ++GP+G+GKT+ + GL GKI
Sbjct: 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL------------ 63
Query: 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631
D ++ M+ R G+ +LPQ S+ ++L T + +
Sbjct: 64 ---DDEDITKLPMH-------KRARLGIGYLPQEA-----SIFRKL---TVEDNIMAV-- 103
Query: 632 AAKSAGLVPFLTSAQKLENVGRKSSKPS--TDDLIKALEDVKLGYILPRLNSLDTTYEWS 689
LE + K K + ++L LE+ + ++ +
Sbjct: 104 ----------------LE-IREKDLKKAERKEELDALLEEFHITHLRDSK---------A 137
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE++R+ AR L + P+ +LLDE + +D
Sbjct: 138 YSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+L RLN ++ + LS+GEQQ + A++L + +++++DE T AL + L+ I
Sbjct: 125 LLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVI 184
Query: 735 -----EAAGITYISVGHR 747
+ GI YIS HR
Sbjct: 185 RELKSQGRGIVYIS--HR 200
|
Length = 501 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
T++ +L+L I + + ++GPSG GKT++LR +AGL G+I
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
|
Length = 351 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 3e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + +P+++L+DE SALD
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
LS G+QQRL AR L +P ++L+DE TSALD + + E I
Sbjct: 151 LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELI 193
|
Length = 254 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 4e-04
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE---ANEAHLYEQIEAAGITYISVGH 746
LS G+QQR++ AR L +P+++L DE TSALD + +Q+ G T + V H
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH 210
|
Length = 257 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 4e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQN 583
++LL+ GP G+GKT+L RA+A Y+ + V +
Sbjct: 17 PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPF-LYLNASDLL---EGLVVAELFGH-F 71
Query: 584 MNGELTRSMNRNSRGVFFL 602
+ L + GV F+
Sbjct: 72 LVRLLFELAEKAKPGVLFI 90
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 4e-04
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 8/64 (12%)
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
LE V++ R++ L TT+ S G QQRL AR L++ P++V +DE T LD +
Sbjct: 135 LERVEID--AARIDDLPTTF------SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186
Query: 727 EAHL 730
+A L
Sbjct: 187 QARL 190
|
Length = 258 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 37/114 (32%), Positives = 53/114 (46%), Gaps = 15/114 (13%)
Query: 648 LENVGRKSSKPSTDDLIKALEDVK-----LGY----ILPRLNSLD---TTYEWSSVLSLG 695
L +G P + + A E++K LG I LN +D T + + SLG
Sbjct: 69 LHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLG 128
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746
+QRL A LL+ P++++LDE T+ LD L E I + GIT I H
Sbjct: 129 MKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSH 182
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 4e-04
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + +P+++L+DE SALD
Sbjct: 152 LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
+D++L I+E E ++ +GPSG GK++LLR +AGL
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52
|
Length = 369 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+ LL ++++ +K ++ ++S + E L+ GPSG GK++LL+ +A L S
Sbjct: 4 NSPLLQLQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTS 61
Query: 555 GKITFYVKD 563
G + F +D
Sbjct: 62 GTLLFEGED 70
|
Length = 225 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
+L +++++L+ P S L+ +++ I + E + +MGPSG GK++LL M G
Sbjct: 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG 50
|
Length = 213 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L++ L++K VRD+S + E + + G G+G+T L A+ GL G+I
Sbjct: 4 VLEVRGLSVKGA------VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI 57
Query: 558 TF 559
T
Sbjct: 58 TL 59
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRT 749
S G ++RL A L+ +P ++ LDE T+ LD +++ I A G+T + H
Sbjct: 126 SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH--Y 183
Query: 750 LYDFHKRVLRISTVDQ 765
+ + K RI+ +D
Sbjct: 184 MEEADKLCDRIAIIDH 199
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 5e-04
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+ LL++ L+ + A V D+SL + E + ++GP+G+GKT+L + G +
Sbjct: 1 TTPLLEVRGLSKRFGGLTA--VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSS 58
Query: 555 GKITFYVKDREETDAH 570
G + F +D H
Sbjct: 59 GTVIFRGRDITGLPPH 74
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 6e-04
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD----EANEAHLYEQIEAAGITYISVGH 746
LS G++QR+A AR L +P+++LLDE ALD + + + + +E G+T + V H
Sbjct: 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH 208
|
Length = 377 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGHR 747
+S G+QQR+A AR L+ KP+++L DE S LD + E+I + IT + V H
Sbjct: 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHD 196
Query: 748 RT 749
++
Sbjct: 197 QS 198
|
Length = 351 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 6e-04
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL----YEQIEAAG 738
D + +L+ G++QRL AR L+ +P++++ DE+ ++LD + + L E E G
Sbjct: 141 DHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQG 200
Query: 739 ITYISV 744
I+YI V
Sbjct: 201 ISYIYV 206
|
Length = 267 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 6e-04
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
S G++QR+A AR L+ P +V+ DE SALD
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
Query: 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLL 706
+L V + D+L+ + +L + L TY S G ++RL AR L
Sbjct: 99 RLYGVPGAERRERIDELLDFVG------LLEAADRLVKTY------SGGMRRRLEIARSL 146
Query: 707 LSKPQIVLLDESTSALDEANEAHLYEQIEA 736
+ +P+++ LDE T LD AH++E IE
Sbjct: 147 VHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 7e-04
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
Q LL + LT K RD+S + E L ++G SGSGKT+LL A++ +
Sbjct: 3 DQPLLSVRGLTKLYGPRKG--CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDA 60
Query: 555 GKITFYVKDREETDAHT 571
G++ + ++D + D +
Sbjct: 61 GEVHYRMRDGQLRDLYA 77
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
+L ++ +T T T + D+SL I + E ++G SG+GK++LLR + L
Sbjct: 3 ELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL 55
|
Length = 339 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ + LS G++QR+A AR L +PQ++LLDE ALD
Sbjct: 127 YPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE---QIEAAGITYISV 744
LS G QQ+ A++LL+ P++++LDE T +D + +Y+ Q+ G+ I V
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVV 459
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 0.001
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 499 LDIEDLTL---KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
+ +ED + + ++D++L + + E + ++GP GSGK+SLL A+ G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLG 53
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 14/102 (13%)
Query: 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS--KPQIVLLDEST 719
D ++ L DV LGY+ L +T LS GE QR+ A L S + +LDE +
Sbjct: 66 DQLQFLIDVGLGYL--TLGQKLST------LSGGELQRVKLASELFSEPPGTLFILDEPS 117
Query: 720 SALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761
+ L + + L E I+ I +G+ L + + VL +
Sbjct: 118 TGLHQQDINQLLEVIK----GLIDLGNTVILIEHNLDVLSSA 155
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 25/103 (24%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL 707
+ R+ P + ED+ + L + + S S + RLA A
Sbjct: 19 ARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS--GSGELRLRLALALARK 76
Query: 708 SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750
KP +++LDE TS LD EA L E + + T+
Sbjct: 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTV 119
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMN 585
E +L++GP GSGKT+L RA+A G Y+ + + + + V + +
Sbjct: 2 GEVILIVGPPGSGKTTLARALARE-LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 586 GE 587
G
Sbjct: 61 GS 62
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS G++QR+A AR L+ + I+LLDE SALD A
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 231 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.001
Identities = 26/57 (45%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGH 746
LS G+QQ L AR L P+++LLDE TSALD + E I A +T I V H
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTH 220
|
Length = 276 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS GE++RLAFA LL+ P ++ DE TS LD
Sbjct: 166 GLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 19/34 (55%), Positives = 25/34 (73%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS G++QR+A AR L+ + I+LLDE SALD A
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPA 163
|
Length = 232 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 57/210 (27%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
+V D+SL +N E + ++GP+G+GKT+ + G+ G I D E D
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIII---DDE-------D 66
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ L +++ R RG+ +LPQ + R+ +Y ++ D
Sbjct: 67 ISLLPLHA------------RARRGIGYLPQEASI----FRRLSVYDNLMAVLQIRDD-- 108
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
L++ Q+ + +A E ++ +I +S+ + LS
Sbjct: 109 --------LSAEQRED---------------RANELMEEFHIEHLRDSMGQS------LS 139
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALD 723
GE++R+ AR L + P+ +LLDE + +D
Sbjct: 140 GGERRRVEIARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 55/229 (24%), Positives = 89/229 (38%), Gaps = 60/229 (26%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA---MAGLWSDGRGKI 557
IE L T A ++++++L I + ++GPSG GK++ +R M L R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG 63
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
Y+ D + VD +E+ R G+ F Q+P S+ +
Sbjct: 64 HIYLDGV---DIYDPAVDVVEL--------------RKKVGMVF--QKPNPFPKSIFDNV 104
Query: 618 IYPTWTEEVKPASDAAKSAGL-VPFLTSAQKLENVGRKSSKPST--DDLIKALEDVKLGY 674
Y GL + +E +S K + D++ L+ LG
Sbjct: 105 AY-----------------GLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALG- 146
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + P+++L+DE SALD
Sbjct: 147 -----------------LSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 54/242 (22%), Positives = 101/242 (41%), Gaps = 57/242 (23%)
Query: 508 TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567
TP L D++L I + + +G +GSGK+++++ + GL +G +
Sbjct: 16 TPFEGRALF-DVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVR--------- 65
Query: 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627
VD + S + N ++ + + + VF P+ QL T ++V
Sbjct: 66 ------VDDTLITSTSKNKDI-KQIRKKVGLVFQFPE----------SQLFEETVLKDV- 107
Query: 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE 687
+ G F S ++ E + R+ L V + L N +
Sbjct: 108 -------AFGPQNFGVSQEEAEALAREK-----------LALVGISESLFEKNPFE---- 145
Query: 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL---YEQIEAAGITYISV 744
LS G+ +R+A A +L +P+I++LDE T+ LD L ++++ +G+T + V
Sbjct: 146 ----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLV 201
Query: 745 GH 746
H
Sbjct: 202 TH 203
|
Length = 280 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+ +L ++ +++ KA + DLS ++ E +++GP+G+GKT+L+ + G
Sbjct: 2 NPIILYLDGVSVSFGGFKA--LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQE 59
Query: 555 GKITFY 560
G++ F
Sbjct: 60 GEVLFD 65
|
Length = 249 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 78/423 (18%), Positives = 151/423 (35%), Gaps = 62/423 (14%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
FRR W PY A L LA V + A T + L + +
Sbjct: 1 TFRRLWSYVRPYK-------AGLVLAGVAMILVAATEST--LAALLKPLLDDGFGGRDRS 51
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYAR--ETLALRWRSWMT-----KYYMERYLK--DQTF 243
+L+++ G+ VLR T L W S E+ L F
Sbjct: 52 ----VLWWVPLVVIGL--AVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFF 105
Query: 244 YKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLIS-FSNILYGIYPPLFVVL 302
+ + +++ RI D A + L + +I F +LY + +V+
Sbjct: 106 DRQPTGTLLS----RITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVV 161
Query: 303 LVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362
++ + + K L ++ + + + + G+ E
Sbjct: 162 VMLPVLSILMRRV-SKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYE----T 216
Query: 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAF 422
+RF + RL + + S + Q++ + +A + F + Q+ +
Sbjct: 217 RRFDAVSNRNRRL---AMKMTSAGSISSPITQLIASLALAVVLFI------ALFQAQAGS 267
Query: 423 NHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI---CLTYCSVK 479
GDF+ I+A A+I L S N++ P+++ + ++
Sbjct: 268 LTA-GDFTAF------ITAMIALIRPL---------KSLTNVNAPMQRGLAAAESLFTLL 311
Query: 480 SFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGK 539
P K G + E+++ ++ ++T + P + +SLVI E + ++G SGSGK
Sbjct: 312 DSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGK 371
Query: 540 TSL 542
++L
Sbjct: 372 STL 374
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS G++QR+A R L+++P + LLDE S LD A
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167
|
Length = 369 |
| >gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578
L L + ++++L+ G +GSGKT+LL A+ IT ++D E + L
Sbjct: 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIIT--IEDTAELQLPHPNWVRLV 75
Query: 579 VNSQNM--NGELT-RSMNRNSRGVFFLPQRP-YMVLGSLR 614
N+ +GE+T + R++ L RP +++G +R
Sbjct: 76 TRPGNVEGSGEVTMADLLRSA-----LRMRPDRIIVGEVR 110
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. Length = 186 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 18/34 (52%), Positives = 25/34 (73%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS GE+QR+A AR+L+ ++LLDE +ALD A
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G+QQRL AR + ++P+++LLDE SALD
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALD 181
|
Length = 261 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565
K PT L ++S+ IN+ E + ++G +GSGKT+ + + L G I + KD +
Sbjct: 15 KLPTELKAL-DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEK 72
|
Length = 305 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 60/242 (24%), Positives = 103/242 (42%), Gaps = 54/242 (22%)
Query: 498 LLDIEDLTL--KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
LLDI +LT+ KT V +S+ + E E ++G SGSGK+ + +A+ G+ D
Sbjct: 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNW- 61
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
++T DR D D+D L ++ + E + + N +F PQ + +
Sbjct: 62 RVT---ADRMRFD----DIDLLRLSPR----ERRKLVGHNVSMIFQEPQSCLDPSERVGR 110
Query: 616 QLI--YPTWTEEVKPASDAAKSAGLVPFLTSAQK----LENVGRKSSKPSTDDLIKALED 669
QL+ P WT K F ++ L VG IK +D
Sbjct: 111 QLMQNIPGWT---------YKGRWWQRFGWRKRRAIELLHRVG-----------IKDHKD 150
Query: 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729
+ YE L+ GE Q++ A L ++P++++ DE T+A++ +A
Sbjct: 151 AMRSF----------PYE----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQ 196
Query: 730 LY 731
++
Sbjct: 197 IF 198
|
Length = 330 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 56/240 (23%), Positives = 85/240 (35%), Gaps = 75/240 (31%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573
++R+L+L I + + V+G SG+GKT+LL R + EE S
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLL----------RMILGAQKGRGEEKYRPDSG 446
Query: 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ N+ + +L P + E
Sbjct: 447 KVEVPKNT----------------------------VSALIPGEYEPEFGEVTI------ 472
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSV-- 691
LE++ K T DL A+E IL R D
Sbjct: 473 --------------LEHLRSK-----TGDLNAAVE------ILNRAGLSDAVLYRRKFSE 507
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGHR 747
LS G+++R A+LL +P ++L+DE + LDE + +I AGIT I V HR
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
|
Length = 593 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 508 TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
TP K L LSL I E + + V+G +G+GK++LL A+AG G+I
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL 64
|
Length = 263 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+D+S I + E + ++G +G+GK++LL+ +AG++ GK+ T V
Sbjct: 44 KDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKV-----------TGKVAP 92
Query: 577 LEVNSQNMNGELT 589
L + ELT
Sbjct: 93 LIELGAGFDPELT 105
|
Length = 249 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ----IV 713
P ++ L DV LGYI +L TT LS GE QR+ A+ LSK +
Sbjct: 144 PKIARKLQTLCDVGLGYI--KLGQPATT------LSGGEAQRIKLAK-ELSKRSTGKTLY 194
Query: 714 LLDESTSALDEANEAHLYE 732
+LDE T+ L + L E
Sbjct: 195 ILDEPTTGLHFHDVKKLLE 213
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 495 SQKLLDIEDLTL--KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552
+ LL I +L++ V+ +S I E L ++G SGSGK+ ++ GL
Sbjct: 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS 62
Query: 553 -----GRGKITF 559
G I F
Sbjct: 63 PAAAHPSGSILF 74
|
Length = 534 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.003
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
+ PRL + + + +S GEQQ LA R L+S+P+++LLDE + L
Sbjct: 123 LFPRL--HERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.003
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 1/51 (1%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
L ++ + K+ K +++ + L + + E ++++GPSG GK++LLR +AGL
Sbjct: 4 LKLQAVR-KSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGL 53
|
Length = 356 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+++EDL + L + LSL I E ++GP+G+GK++LL + G++ RG++
Sbjct: 5 IEVEDLHFRYKDGTKAL-KGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVK 63
|
Length = 274 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE---AHLYEQIEAAGITYISVGH-- 746
LS G++QR+ AR L ++P ++LLDE + LD + L+ ++ AG + H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDL 173
Query: 747 --------RRTLYDFHKRVLRISTVDQNSSQSNWKLEF 776
R L + RV+ T Q + W F
Sbjct: 174 AQAMATCDRVVL--LNGRVIADGTPQQLQDPAPWMTTF 209
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+++ +++ P A L D+SL I + E L + GPSG+GKT+LL+ + G + RG++
Sbjct: 1 MIEFHNVSKAYPGGVAAL-HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYI 742
LS G QQ++ AR L + P++++LDE T +D +A +Y I A G +
Sbjct: 402 LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
LS G +QR+ AR L +PQ++LLDE ALD + E
Sbjct: 133 LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
|
Length = 259 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.004
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725
LS G+QQRL AR L KP+++L+DE LD
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPI 184
|
Length = 261 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 19/38 (50%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD-EANEA 728
LS G++ R+AFA++ KP I+LLDE ++ LD +A EA
Sbjct: 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEA 665
|
Length = 718 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.98 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.97 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.97 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.97 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.96 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.96 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.96 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.96 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.96 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.95 | |
| PRK11098 | 409 | microcin B17 transporter; Reviewed | 99.95 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.95 | |
| PRK12369 | 326 | putative transporter; Reviewed | 99.95 | |
| PF06472 | 281 | ABC_membrane_2: ABC transporter transmembrane regi | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.94 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.93 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.92 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.92 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.92 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.91 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.91 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.9 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.89 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.88 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.88 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.87 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.86 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.86 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.86 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.84 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.82 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.82 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.82 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.79 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.78 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.77 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.77 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.76 | |
| PF00664 | 275 | ABC_membrane: ABC transporter transmembrane region | 99.75 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.74 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.7 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.7 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.68 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.67 | |
| PF05992 | 315 | SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009 | 99.67 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.67 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.67 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.63 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.63 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.61 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.61 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.57 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.56 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.53 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.51 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.5 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.48 | |
| COG1133 | 405 | SbmA ABC-type long-chain fatty acid transport syst | 99.48 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.44 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.41 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.41 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.4 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.39 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.37 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.37 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.31 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.26 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.25 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.24 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.21 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.2 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.13 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.13 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.09 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.09 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.06 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.02 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.02 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.0 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.96 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.95 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.89 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.88 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.87 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 98.85 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 98.8 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.8 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.77 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.77 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.77 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.7 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.67 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 98.64 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 98.63 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 98.52 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 98.49 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.47 | |
| PF13748 | 237 | ABC_membrane_3: ABC transporter transmembrane regi | 98.47 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.45 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.44 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.42 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.36 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.36 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.34 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.34 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 98.3 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.29 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.29 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.28 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.27 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.25 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 98.24 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.06 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.02 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.02 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.0 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 97.95 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.95 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 97.95 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 97.91 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 97.88 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 97.88 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.87 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 97.85 | |
| TIGR03497 | 413 | FliI_clade2 flagellar protein export ATPase FliI. | 97.85 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 97.84 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 97.84 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.83 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 97.81 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 97.81 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.8 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.79 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 97.78 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.76 |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-85 Score=743.91 Aligned_cols=535 Identities=20% Similarity=0.249 Sum_probs=426.9
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCh-HHHHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQ-EQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~-~~~~~~ll~~~~~~~~~~~ 209 (788)
..+++++.|++|+|+ +++..+++.++.+..++..|++.+.++|.+.. .+. ..+......+.++++++.+
T Consensus 133 ~~~~rl~~l~~~~~~---------~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~~~~~~~~~~~l~~l~~~~a~ 203 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWK---------WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDSADALKRACTILLGLFLIGAL 203 (716)
T ss_pred hHHHHHHHHhchhHH---------HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998 37777777788888899999999999998766 222 3333333344444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHh--cCCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQ--SQSIIDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~--~~~~~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..++.++.. .....+...+|.++|.++. ...+||.. .+|++.|+..+...+...+...+..++
T Consensus 204 ~~~~r~~~~~---------~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~ 274 (716)
T KOG0058|consen 204 ANAIRGGLLQ---------YAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLV 274 (716)
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444433322 2233456778888888885 45667754 389999999999988888888899999
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
..++.+++|++++|.|+++.++.+|+.+++..+++++.+++++..|++.++.+....|.+.+++|||+|+.|+.|.++|.
T Consensus 275 ~~~g~~~~M~~~S~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~ 354 (716)
T KOG0058|consen 275 QGFGGLGFMFSLSWRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYN 354 (716)
T ss_pred HHHHhHHHHhhhhHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888999999999999999999997666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
++.++..+-..+.........+.+.....+..+..+.++++++..|.+|.|.+..++.+-..+...+..+...+..+...
T Consensus 355 ~~l~~~~~i~~k~a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkg 434 (716)
T KOG0058|consen 355 KKLREVLKLSKKEAVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKG 434 (716)
T ss_pred HHHHHHHHHHHHHHHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555554443333333333344444455555666677889999999999999887776666555555554444433333
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSL 521 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl 521 (788)
....+|+.++. |.++..+ .++...+....|.|+|+||+|+||++ +.++|+|+||
T Consensus 435 vGAs~rvFel~---dr~P~i~----------------------~~G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsf 489 (716)
T KOG0058|consen 435 VGASERVFELM---DRKPRIP----------------------LTGTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSF 489 (716)
T ss_pred cchHHHHHHHh---ccCCCCC----------------------CCCccccccccceEEEEEeeeecCCCCCchhhcCcee
Confidence 34445555543 2221110 11112222467899999999999975 3469999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|+|||++|||||||+||||+++||.+||+|++|+|++||.|.++++ ...+|++||+
T Consensus 490 ti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~-----------------------~~~lr~~Ig~ 546 (716)
T KOG0058|consen 490 TIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN-----------------------HKYLRRKIGL 546 (716)
T ss_pred eeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC-----------------------HHHHHHHeee
Confidence 99999999999999999999999999999999999999776665553 3357889999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
|.|||.||++||+|||.||....+++++.+|||.|++|+|++..+ +|
T Consensus 547 V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p---------------------------------~g 593 (716)
T KOG0058|consen 547 VGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFP---------------------------------DG 593 (716)
T ss_pred eeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCc---------------------------------cc
Confidence 999999999999999999999999999999999999999886533 69
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|. ||+|.+|||||||||||||||++||.||||||||||||.++|..|+++|++ +++|||+||||+++++.||+|+
T Consensus 594 Y~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Iv 673 (716)
T KOG0058|consen 594 YNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIV 673 (716)
T ss_pred cccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEE
Confidence 9997 999999999999999999999999999999999999999999999999986 6999999999999999999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
|+++|+.
T Consensus 674 vi~~G~V 680 (716)
T KOG0058|consen 674 VIDKGRV 680 (716)
T ss_pred EEcCCeE
Confidence 9999975
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-76 Score=688.42 Aligned_cols=535 Identities=21% Similarity=0.225 Sum_probs=417.7
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+.++++.+.+||+ .+.-+++.+++...++++.|++.+.++|.+. ..+.+.++...+.++++.++..++.
T Consensus 141 ~~~~f~~~~~~~~~---------~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~tL~vl~ig~~~~~l~~~~l~ 211 (709)
T COG2274 141 GLSWFIPLLFKYRR---------LLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRSTLTVLAIGLLLAALFEALLR 211 (709)
T ss_pred chHhHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 46677788878876 3666777788888899999999999999754 4443333221111111111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.++.++...++ +.+...+....|.|+.++|. |++. .+|+ +|+++++++.++...+++..++..
T Consensus 212 ~lr~~~~~~~~---------~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~ 281 (709)
T COG2274 212 LLRTYLIAHLG---------KRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFA 281 (709)
T ss_pred HHHHHHHHHHH---------HHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222 22344455677888887775 4422 2565 589999999888888888888888
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|++++|+|++++++.+++++++..++.+.+++..++.-+..++..+.+.|+..++++||+.+.|.....++.++
T Consensus 282 ~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~ 361 (709)
T COG2274 282 LIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNR 361 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHH
Confidence 88888999999999999999999999999999999999998888888888899999999999999999998887666666
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
|.+..+...+..........+...+..+..++.+.++++++..|.+|+|.+.++.....++.+++..+...+..+.....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~ 441 (709)
T COG2274 362 LAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKV 441 (709)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 65555443333322233334444445555666677788999999999999988888777888888777777777777777
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+|+.++. +.+.+.+.+. .....+...|.|+|+||+|+|+.++.++|+|+||+|+
T Consensus 442 ~~~rL~dil---~~~~E~~~~~---------------------~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~ 497 (709)
T COG2274 442 ALERLGDIL---DTPPEQEGDK---------------------TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIP 497 (709)
T ss_pred HHHHHHHHh---cCCccccccc---------------------ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeC
Confidence 788887654 3332211100 0112334678999999999998765679999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
|||++||||+||||||||+|+|+|+|+|++|+|++||.|..++ ++..+|++||||+|
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i-----------------------~~~~lR~~ig~V~Q 554 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDI-----------------------DLASLRRQVGYVLQ 554 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhc-----------------------CHHHHHhheeEEcc
Confidence 9999999999999999999999999999999999976654444 34467899999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|++||+|||+|||++++++.+.+++.+||+.+++|+|+... |.||+|
T Consensus 555 ~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~l---------------------------------P~gy~t 601 (709)
T COG2274 555 DPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENL---------------------------------PMGYDT 601 (709)
T ss_pred cchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhc---------------------------------cccccc
Confidence 99999999999999999998888999999999988876542 369999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +|.|.+|||||||||+|||||++||+||||||||||||+++|+.|++.|.+ .|+|+|+||||++++++||||+||+
T Consensus 602 ~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~ 681 (709)
T COG2274 602 PVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLD 681 (709)
T ss_pred ccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEcc
Confidence 7 999999999999999999999999999999999999999999999999987 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 682 ~Gkiv 686 (709)
T COG2274 682 QGKIV 686 (709)
T ss_pred CCcee
Confidence 99863
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-76 Score=699.16 Aligned_cols=538 Identities=20% Similarity=0.215 Sum_probs=377.3
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCChHHHHHH-HHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTG-ISVGFNFLGRDFYNALADKDQEQFAKQ-LLYYLGAFAGG 207 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~-l~~~~~~l~~~iid~l~~~~~~~~~~~-ll~~~~~~~~~ 207 (788)
....+.+++++.+|+|+ ++++.+++.+..+ ...+++++++.++..+...+.+..... ..|.+++++++
T Consensus 648 ~~~s~~~i~k~~~pe~~----------~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~ 717 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPEWP----------YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLG 717 (1228)
T ss_pred ccccHHHHHHhccchhH----------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Confidence 34568899999999998 3444444444444 445899999999998876654433222 22222222222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--hcCCCCCCch------hhHHHHHHHHHHHHHHHHHH
Q 040758 208 I---PFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKI--QSQSIIDNPD------QRIVDDLSSFTGTALSFSLT 276 (788)
Q Consensus 208 ~---~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l--~~~~~~~~~~------~Ri~~Dv~~v~~~~~~~~~~ 276 (788)
+ +..++..++... ....+...+|...|.++ |..+|||+|. +|+.+|+..++..+..-+..
T Consensus 718 ~~~~i~~~~q~~~f~~---------~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~ 788 (1228)
T KOG0055|consen 718 IVSGITNFLQHYFFGI---------AGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSL 788 (1228)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHH
Confidence 2 112222222111 11223445666666666 4577898874 69999999999876665556
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchH
Q 040758 277 LFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDN 356 (788)
Q Consensus 277 ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~ 356 (788)
++..+..++..+++-+.+.|.++++++..+|++++......+.+.....+..++..+-.....|+++|++||++|+.|++
T Consensus 789 vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~ 868 (1228)
T KOG0055|consen 789 VVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEK 868 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHH
Confidence 66666666666666677889999998888887777666666655555544444444444445899999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 357 EMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQF 436 (788)
Q Consensus 357 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~ 436 (788)
..+.|.+..++..+...+..........+...+.+....+.+.++.+++..|.+++..+...+.++..-...++.....+
T Consensus 869 ~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~ 948 (1228)
T KOG0055|consen 869 FMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYA 948 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88766666555555433332222211122222233333344555677888888888876543332221111111111111
Q ss_pred HHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccc
Q 040758 437 QAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATL 515 (788)
Q Consensus 437 ~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~v 515 (788)
..+........++. .++|.+... ++.+ +.....+..+|.|+|+||+|+||.++ .++
T Consensus 949 Pd~~ka~~Aa~~iF---~i~dr~~~i----------------~~~~----~~~~~~~~~~G~I~~~~V~F~YPsRP~~~I 1005 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIF---EILDRKPTI----------------DPDS----TSGGKLPNVKGDIEFRNVSFAYPTRPDVPV 1005 (1228)
T ss_pred cHHHHHHHHHHHHH---HHhcCCCCC----------------CCCC----CCCCccccceeEEEEeeeEeeCCCCCCchh
Confidence 22222233333332 333433211 1111 11122345678999999999999643 368
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||++||||||||||||++.||.|||||++|.|.+||.|.+++ +++.+
T Consensus 1006 l~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~l-----------------------nl~~L 1062 (1228)
T KOG0055|consen 1006 LNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDL-----------------------NLKWL 1062 (1228)
T ss_pred hcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccC-----------------------CHHHH
Confidence 9999999999999999999999999999999999999999999976665554 34467
Q ss_pred cceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccc
Q 040758 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 675 (788)
|++||+|.|||.||++||||||+||....+++++.+|||.|++|+|+...
T Consensus 1063 R~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sL------------------------------ 1112 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSL------------------------------ 1112 (1228)
T ss_pred HHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcC------------------------------
Confidence 89999999999999999999999995457888999999999999987653
Q ss_pred cccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhh
Q 040758 676 LPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYD 752 (788)
Q Consensus 676 ~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~ 752 (788)
|+||||. ||+|.+||||||||||||||++|||+||||||||||||.++|+.+|++|++ .|+|+|+||||+++++
T Consensus 1113 ---P~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq 1189 (1228)
T KOG0055|consen 1113 ---PQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ 1189 (1228)
T ss_pred ---cCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh
Confidence 3799997 999999999999999999999999999999999999999999999999987 6999999999999999
Q ss_pred cCCEEEEEccCCC
Q 040758 753 FHKRVLRISTVDQ 765 (788)
Q Consensus 753 ~~D~Ilvl~~g~~ 765 (788)
+||.|.|+++|+.
T Consensus 1190 naD~I~Vi~~G~V 1202 (1228)
T KOG0055|consen 1190 NADVIAVLKNGKV 1202 (1228)
T ss_pred cCCEEEEEECCEE
Confidence 9999999999974
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-71 Score=656.55 Aligned_cols=528 Identities=18% Similarity=0.178 Sum_probs=370.8
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--CChHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD--KDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~--~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+++++++++|||+ .+++.++++++..++.+..|++++.++|.+.. .+...+.. +++++++..++
T Consensus 9 ~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~----~~~~~~~~~~~ 75 (588)
T PRK11174 9 LTRWLKQQSKPAKR---------WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPREALLP----PFILLILLFVL 75 (588)
T ss_pred hhHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH----HHHHHHHHHHH
Confidence 47889999999887 36666777778888888999999999997642 22222211 11111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+.+.+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 76 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~ 150 (588)
T PRK11174 76 RALLAWLRER----VGFK-AGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLV 150 (588)
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1111 2233567899999999988775 3332 3799999999998877667777777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
.+..++++++++|++++++++..|+..++..++.++..+...+.++..+++...+.|.++++++||+|+.|+.+.+++.+
T Consensus 151 ~~~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~ 230 (588)
T PRK11174 151 PLLILIAVFPINWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRS 230 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHH
Confidence 77777788899999999888888877777888888888877777788888888899999999999999999988865444
Q ss_pred HHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHHH---HHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLE-FFTSGYRYLIQILP---AAVVAPMYFSGKIEFGVIN---------QSVSAFNHILGDFS 430 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~l~~~G~it~G~l~---------~~~~~~~~~~~~l~ 430 (788)
..++..+ ...+..+.. ........+..+.. .+++++ +..|.+|+|.+. ..+.+...+..++.
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~ 305 (588)
T PRK11174 231 ASEDFRQ----RTMEVLRMAFLSSAVLEFFASISIALVAVYFGF-SYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLR 305 (588)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcccccccccccchHHHHHHHHHHhHHHHHHHH
Confidence 4443333 222221111 11111111111111 112222 334788888641 11122233344455
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCC
Q 040758 431 LIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPT 510 (788)
Q Consensus 431 ~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~ 510 (788)
.+...+..+.......+|+.++.+. +..... . . ....+....+.|+|+||+|.|++
T Consensus 306 ~l~~~~~~~~~~~~~~~ri~~~l~~---~~~~~~-~-------------------~-~~~~~~~~~~~i~~~~vsf~~~~ 361 (588)
T PRK11174 306 DLGTFYHAKAQAVGAAESLVTFLET---PLAHPQ-Q-------------------G-EKELASNDPVTIEAEDLEILSPD 361 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC---CCcccC-C-------------------C-ccccCCCCCceEEEEeeEEeccC
Confidence 5544444555556667777665432 111000 0 0 00000012346999999988764
Q ss_pred CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 511 ~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++++|+|+||+|++||++|||||||||||||+++|+|+| |++|+|.+||.|..++
T Consensus 362 -~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~----------------------- 416 (588)
T PRK11174 362 -GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL----------------------- 416 (588)
T ss_pred -CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccC-----------------------
Confidence 467999999999999999999999999999999999999 9999999976654444
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
+.+.+|++|+||||+|+||++||+|||+|+.++.+. +++.++++.+
T Consensus 417 ~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~----------------------------------eei~~al~~a 462 (588)
T PRK11174 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASD----------------------------------EQLQQALENA 462 (588)
T ss_pred CHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCH----------------------------------HHHHHHHHHh
Confidence 223567889999999999999999999998654444 4555555555
Q ss_pred cccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEec
Q 040758 671 KLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaH 746 (788)
++++++.. ++||||. +|+|.+|||||||||+|||||++||+|||||||||+||+++|+.|++.|++ +++|+|+|||
T Consensus 463 ~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItH 542 (588)
T PRK11174 463 WVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTH 542 (588)
T ss_pred CHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 55443333 4899996 999999999999999999999999999999999999999999999999976 6899999999
Q ss_pred CcchhhcCCEEEEEccCCCC
Q 040758 747 RRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 747 r~~~~~~~D~Ilvl~~g~~~ 766 (788)
|+++++.||+|++|++|+..
T Consensus 543 rl~~i~~aD~Iivl~~G~i~ 562 (588)
T PRK11174 543 QLEDLAQWDQIWVMQDGQIV 562 (588)
T ss_pred ChHHHHhCCEEEEEeCCeEe
Confidence 99999999999999999753
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=665.73 Aligned_cols=535 Identities=19% Similarity=0.248 Sum_probs=401.7
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADK-DQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~-~~~~~~~~ll~~~~~~~~~~~ 209 (788)
...+++++++++++|+ .++..+++.++.+++.+..|++++.++|.+... +.+.+.....+++++.++..+
T Consensus 146 ~~~~~~l~~~~~~~~~---------~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWP---------WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIASSV 216 (711)
T ss_pred hhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999988876 366677777888888999999999999987643 433333222222211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..++. .+ ....+...+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++
T Consensus 217 ~~~l~~~~~--------~~-~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~ 287 (711)
T TIGR00958 217 SAGLRGGSF--------NY-TMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV 287 (711)
T ss_pred HHHHHHHHH--------HH-HHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111 11 2223556788889999887765 4332 389999999999877777777778888
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.+++++++|+.++|++++++++..++.+++..+++++..+...+.++..++....+.|..+++++||+|+.|+.+.+++.
T Consensus 288 ~~i~~~~~l~~~s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~ 367 (711)
T TIGR00958 288 MLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFK 367 (711)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHH
Confidence 88888888999999999998888888888888999988888888888888899889999999999999999999987666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
+..++..+...+..............+..+..++.+.++++++..|.+|+|.+.+++.++..+..++..+...+..+...
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~ 447 (711)
T TIGR00958 368 EALEETLQLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQA 447 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555554433332222222222333333444445556778889999999999888888888888888877777777777
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSL 521 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl 521 (788)
....+|+.++.+ .++..... +...+....+.|+|+||+|+||++ ++++|+|+||
T Consensus 448 ~~a~~ri~~~l~---~~~~~~~~----------------------~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl 502 (711)
T TIGR00958 448 VGASEKVFEYLD---RKPNIPLT----------------------GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTF 502 (711)
T ss_pred HHHHHHHHHHhC---CCCCCCCC----------------------CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceE
Confidence 777888766543 21110000 000111234579999999999853 3579999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|++|+|
T Consensus 503 ~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~ 559 (711)
T TIGR00958 503 TLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQY-----------------------DHHYLHRQVAL 559 (711)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc-----------------------CHHHHHhhceE
Confidence 9999999999999999999999999999999999999976554433 22356778999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||||++|++||+|||.|+.++.+ ++++.++++.+++++++++ ++
T Consensus 560 v~Q~~~lF~gTIreNI~~g~~~~~----------------------------------~e~i~~al~~a~l~~~i~~lp~ 605 (711)
T TIGR00958 560 VGQEPVLFSGSVRENIAYGLTDTP----------------------------------DEEIMAAAKAANAHDFIMEFPN 605 (711)
T ss_pred EecCccccccCHHHHHhcCCCCCC----------------------------------HHHHHHHHHHcCCHHHHHhCCC
Confidence 999999999999999999865433 3455566666666554444 47
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
|+||. +|+|.+|||||||||+|||||+++|+|||||||||+||+++|+.+++.....++|+|+||||+++++.||+|++
T Consensus 606 GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~aD~Iiv 685 (711)
T TIGR00958 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVERADQILV 685 (711)
T ss_pred ccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHhCCEEEE
Confidence 99996 89999999999999999999999999999999999999999999999333478999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 686 L~~G~i 691 (711)
T TIGR00958 686 LKKGSV 691 (711)
T ss_pred EECCEE
Confidence 999875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=657.84 Aligned_cols=515 Identities=18% Similarity=0.177 Sum_probs=382.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
++.+++++++...+.+..|++++.++|.+.. ++...++. +++.+++..++..+..++...+.. . ....+.
T Consensus 138 ~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~ 208 (686)
T TIGR03797 138 LLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRSLLVQ----IALALLAAAVGAAAFQLAQSLAVL----R-LETRMD 208 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----H-HHHHHH
Confidence 5666777788888899999999999997653 33222221 111111111111222222222111 1 223356
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
..+|..+|+|+.+++. +++. .+|+. |++.+++.+.......+...+.++.++++|++++|++++++++..++
T Consensus 209 ~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~~~~ 287 (686)
T TIGR03797 209 ASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALVAVALALV 287 (686)
T ss_pred HHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999988775 3332 26876 78888887666555555555555666678888999999988888888
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
.+++..++.++..+...+..+..++..+.+.|..+++++||+|+.|+.+.+++.+.+.+..+...+..............
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (686)
T TIGR03797 288 AIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIENLLTVFNAV 367 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87888888888888887788888888888999999999999999999887655555555444433333222222233333
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchh
Q 040758 389 YRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL 468 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~ 468 (788)
+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......++|+.++.+. +.+...
T Consensus 368 i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~---~~e~~~---- 440 (686)
T TIGR03797 368 LPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEA---LPEVDE---- 440 (686)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---Cccccc----
Confidence 3344444555667788889999999999888888888888887777777777777778887765332 111000
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 469 EKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+...+....+.|+|+||+|+|+++++++|+|+||+|++||++|||||||||||||+|+|+|
T Consensus 441 -------------------~~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~g 501 (686)
T TIGR03797 441 -------------------AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG 501 (686)
T ss_pred -------------------CcCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhC
Confidence 0000112345799999999997556789999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccch
Q 040758 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP 628 (788)
Q Consensus 549 l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~ 628 (788)
+|+|++|+|.+||.|..++ +.+.+|++||||||||++|++||+|||.++.+ .+
T Consensus 502 l~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~--- 554 (686)
T TIGR03797 502 FETPESGSVFYDGQDLAGL-----------------------DVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LT--- 554 (686)
T ss_pred CCCCCCCEEEECCEEcCcC-----------------------CHHHHHhccEEEccCCccCcccHHHHHhcCCC-CC---
Confidence 9999999999976554443 22356788999999999999999999999754 33
Q ss_pred hhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 629 ~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
++++.++++.++++++.. .++||||. +|+|.+|||||||||+|||||
T Consensus 555 -------------------------------~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAl 603 (686)
T TIGR03797 555 -------------------------------LDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603 (686)
T ss_pred -------------------------------HHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence 345555556666554433 35899997 899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|++||||||||+||+++|+.+++.|++.++|+|+||||+++++.||+|++|++|+.
T Consensus 604 l~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~~D~Iivl~~G~i 662 (686)
T TIGR03797 604 VRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLDAGRV 662 (686)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999888999999999999999999999999975
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=660.53 Aligned_cols=539 Identities=17% Similarity=0.185 Sum_probs=397.5
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++++ .++.+++++++...+.+..|++++.++|.+..... ..++. +++.+++..++.
T Consensus 141 ~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~l~~----~~~~~~~~~~~~ 207 (710)
T TIGR03796 141 LLRALWRRLRGSRG---------ALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDWLRP----LLLGMGLTALLQ 207 (710)
T ss_pred cHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH----HHHHHHHHHHHH
Confidence 46778888888765 35566667777888888999999999997654322 21111 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++..++..+ ....+...++..+|.|+.+++. +++. .+|+.+| ..+++.+......++..++.+
T Consensus 208 ~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~ 281 (710)
T TIGR03796 208 GVLTWLQLYYLRR-----LQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVML 281 (710)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222111 1223567788899999988775 3332 3788877 678877766667777777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|+.++|++++++++..++.+++..++.++..+...+.++..++..+.+.|..+++++||+++.|+.+.+++.+.
T Consensus 282 ~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~ 361 (710)
T TIGR03796 282 VFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGY 361 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHH
Confidence 77778889999999999988888888888888888888877778888888888999999999999999999888665555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
+.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~ 441 (710)
T TIGR03796 362 QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEG 441 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333222222223333333444445556677888999999999998888888888888877777777777778
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
.++|+.++.+..++.. ... ... ............+.|+++||+|+|++.++++|+|+||+|+
T Consensus 442 ~~~ri~~il~~~~e~~---~~~--------------~~~-~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~ 503 (710)
T TIGR03796 442 DLNRLDDVLRNPVDPL---LEE--------------EEA-PAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQ 503 (710)
T ss_pred HHHHHHHHHcCCCccc---ccc--------------ccc-cccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEc
Confidence 8888876543211110 000 000 0000000012346799999999998655789999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+||++|||||||||||||+|+|+|+|+|++|+|.+||.|..++ +...+|++||||||
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q 560 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEI-----------------------PREVLANSVAMVDQ 560 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHC-----------------------CHHHHHhheeEEec
Confidence 9999999999999999999999999999999999976554333 23356788999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLD 683 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~ 683 (788)
||++|++||+|||.++.++.+ ++++.++++.++++++.. .++|++
T Consensus 561 ~~~lf~gTi~eNi~l~~~~~~----------------------------------~~~i~~al~~~~l~~~i~~lp~gl~ 606 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLWDPTIP----------------------------------DADLVRACKDAAIHDVITSRPGGYD 606 (710)
T ss_pred CChhhhccHHHHhhCCCCCCC----------------------------------HHHHHHHHHHhCCHHHHHhCcCccc
Confidence 999999999999998754433 445555666666655443 348999
Q ss_pred cc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 684 TT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 684 t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
|. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|++.++|+|+||||+++++.||+|++|++
T Consensus 607 t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~~D~Iivl~~ 686 (710)
T TIGR03796 607 AELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRDCDEIIVLER 686 (710)
T ss_pred ceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeC
Confidence 97 89999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|+.
T Consensus 687 G~i 689 (710)
T TIGR03796 687 GKV 689 (710)
T ss_pred CEE
Confidence 875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-70 Score=656.38 Aligned_cols=534 Identities=19% Similarity=0.222 Sum_probs=394.3
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++|+ .+..+++++++..++.+..|++++.++|.+.. ++...++. +++.+++..++.
T Consensus 134 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~l~~----~~~~~~~~~~~~ 200 (694)
T TIGR03375 134 PKHWFWSTLKESWP---------LYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFETLWV----LAIGVALAIVFD 200 (694)
T ss_pred cchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhHHHH----HHHHHHHHHHHH
Confidence 45677888887776 35566677777888889999999999997653 33222211 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCC-CC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSII-DN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~-~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
.+..++..++. .+ ....+...+|..+|.|+.+++.. ++ + .+|+ +|++.+++.+......++..++.++
T Consensus 201 ~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~ll~l~~~~~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~ 274 (694)
T TIGR03375 201 FVLKTLRSYFL----DV-AGKKADLILSAKLFERVLGLRMEARPASVGSFANQL-REFESVRDFFTSATLTALIDLPFAL 274 (694)
T ss_pred HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHhCCCcccCCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222222211 11 12235677899999999988762 22 1 2687 7999999877666566666666666
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++|++++|++++++++..++.+++..++.++..+...+..+..++..+.+.|..+++++||+|+.|+.+.+++.+.+
T Consensus 275 ~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~ 354 (694)
T TIGR03375 275 LFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTV 354 (694)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHH
Confidence 66778888999999999888888888888899999888888888888999999999999999999999998886555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~ 434 (694)
T TIGR03375 355 AALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTA 434 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333322222222222333333444445566778889999999999988888888888888777777777777777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++.+. +.+.... ..........+.|+|+||+|+|+++++++|+|+||+|++
T Consensus 435 ~~ri~~il~~---~~e~~~~---------------------~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~ 490 (694)
T TIGR03375 435 LQSLDELMQL---PVERPEG---------------------TRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRP 490 (694)
T ss_pred HHHHHHHHcC---CCCCCCC---------------------CCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECC
Confidence 8887765432 2110000 000001123457999999999986556799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++|||||||||||||+|+|+|+|+|++|+|.+||.|..++ +...+|++|+|||||
T Consensus 491 G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~-----------------------~~~~lr~~i~~v~Q~ 547 (694)
T TIGR03375 491 GEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI-----------------------DPADLRRNIGYVPQD 547 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC-----------------------CHHHHHhccEEECCC
Confidence 999999999999999999999999999999999976544333 233567889999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t 684 (788)
+++|++||+|||.++.++.+. +++.++++.++++++... ++||||
T Consensus 548 ~~lf~~TI~eNi~~~~~~~~~----------------------------------~~i~~a~~~~~l~~~i~~lp~gl~T 593 (694)
T TIGR03375 548 PRLFYGTLRDNIALGAPYADD----------------------------------EEILRAAELAGVTEFVRRHPDGLDM 593 (694)
T ss_pred hhhhhhhHHHHHhCCCCCCCH----------------------------------HHHHHHHHHcChHHHHHhCcccccc
Confidence 999999999999998654433 455555555555443333 489999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .++|+|+||||+++++.||+|++|+
T Consensus 594 ~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~ 673 (694)
T TIGR03375 594 QIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMD 673 (694)
T ss_pred eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEe
Confidence 7 899999999999999999999999999999999999999999999999976 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 674 ~G~i~ 678 (694)
T TIGR03375 674 NGRIV 678 (694)
T ss_pred CCEEE
Confidence 98753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-70 Score=656.57 Aligned_cols=532 Identities=17% Similarity=0.180 Sum_probs=392.7
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKD-QEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~-~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++++++ .++.+++++++..++.+..|++++.++|.+.... ...++. +.+.+++..++.
T Consensus 143 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~l~~----~~~~~~~~~~~~ 209 (708)
T TIGR01193 143 SLLKFIPLITRQKK---------LIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGI----ISIGLIIAYIIQ 209 (708)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH----HHHHHHHHHHHH
Confidence 36677888877765 3566666677788888999999999999765432 222211 111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++...+. ... ...+...+|..+|.|+.+++. +++. .+|++ |++.+++.+......++..++.+
T Consensus 210 ~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~ 283 (708)
T TIGR01193 210 QILSYIQIFLL----NVL-GQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWIL 283 (708)
T ss_pred HHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222222211 111 223566788889999988775 4332 26887 88888887776666666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+.++++|++++|++++++++..++.+++..++.++..+..++..+..++..+.+.|.++++++||+|+.|+.+.+++.+.
T Consensus 284 ~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~ 363 (708)
T TIGR01193 284 VIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSE 363 (708)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHH
Confidence 66677788899999999988888888888888999988888888888889999999999999999999999888666555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
+.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~ 443 (708)
T TIGR01193 364 FGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARV 443 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443333222222222223333344445556678889999999999998888888888888877777777777777
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+|+.++.+...+... .. .........+.|+++||+|+|++ ++++|+|+||+|+
T Consensus 444 ~~~ri~~~l~~~~e~~~---~~---------------------~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~isl~i~ 498 (708)
T TIGR01193 444 ANNRLNEVYLVDSEFIN---KK---------------------KRTELNNLNGDIVINDVSYSYGY-GSNILSDISLTIK 498 (708)
T ss_pred HHHHHHHHHcCCCcccc---cc---------------------cccCCCCCCCcEEEEEEEEEcCC-CCcceeceeEEEC
Confidence 78888765432111100 00 00001123457999999999974 5689999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+||++|||||||||||||+++|+|+|+|++|+|++||.|..++ +.+.+|++||||||
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~lr~~i~~v~Q 555 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI-----------------------DRHTLRQFINYLPQ 555 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHc-----------------------CHHHHHHheEEEec
Confidence 9999999999999999999999999999999999976554333 23356788999999
Q ss_pred ccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 605 RPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
||++|++||+|||.++. +..+ ++++.++++.+++++++.. ++||
T Consensus 556 ~~~lf~gTI~eNi~l~~~~~~~----------------------------------~~~i~~a~~~a~l~~~i~~lp~gl 601 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAKENVS----------------------------------QDEIWAACEIAEIKDDIENMPLGY 601 (708)
T ss_pred CceehhHHHHHHHhccCCCCCC----------------------------------HHHHHHHHHHhCCHHHHHhccccc
Confidence 99999999999999973 3333 3445555555555443333 4799
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecCcchhhcCCEEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
||. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .|+|+|+||||+++++.||+|++|
T Consensus 602 dt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~~D~i~~l 681 (708)
T TIGR01193 602 QTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQSDKIIVL 681 (708)
T ss_pred CcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHcCCEEEEE
Confidence 996 899999999999999999999999999999999999999999999999986 589999999999999999999999
Q ss_pred ccCCC
Q 040758 761 STVDQ 765 (788)
Q Consensus 761 ~~g~~ 765 (788)
++|+.
T Consensus 682 ~~G~i 686 (708)
T TIGR01193 682 DHGKI 686 (708)
T ss_pred ECCEE
Confidence 99975
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-70 Score=637.48 Aligned_cols=516 Identities=21% Similarity=0.250 Sum_probs=382.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+.+.+++.++..++.+..|++.+.++|.+. .+.........++++++++..++.....+.. .+.. ..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--------~~~~-~~~~~ 85 (567)
T COG1132 16 LLLAILLLLLSALLSLLLPLLIGRIIDALL-ADLGELLELLLLLLLLALLGGVLRALQSYLG--------SRLG-QKIVA 85 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH-HHHHH
Confidence 556666677778889999999999999876 2222222222222222221111111111111 1121 34668
Q ss_pred HhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGG 309 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~ 309 (788)
.+|..+|.++++.+. +++. .+|+++|++.+...+......+...++.+++..++++.++|.+++++++..|+.
T Consensus 86 ~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 86 DLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 899999999998874 4432 379999999999876665444554677777777888889999999998888888
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040758 310 TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY 389 (788)
Q Consensus 310 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (788)
.++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+..++..+...+...............
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877778888888888999999999999999999999998865443333333332222111111122222222
Q ss_pred HHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhh
Q 040758 390 RYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLE 469 (788)
Q Consensus 390 ~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~ 469 (788)
..+...+...++++.+..|.+++|.+..++.+...+..++..+...+..+.......+|+.++.+ .+.... +
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~---~~~~~~--~--- 317 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLD---EEPEVE--D--- 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCcccc--C---
Confidence 33333344455667788899999999888888888887777776666666666667777765533 211100 0
Q ss_pred hhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 470 KICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
... ......+.|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+
T Consensus 318 ----------------~~~--~~~~~~~~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~ 378 (567)
T COG1132 318 ----------------PPD--PLKDTIGSIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378 (567)
T ss_pred ----------------CCC--CCCCCCCeEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 000 01123456999999999974 56899999999999999999999999999999999999
Q ss_pred CCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchh
Q 040758 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPA 629 (788)
Q Consensus 550 ~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~ 629 (788)
|+|++|+|++||.|..++ +.+.+|++|++||||++||++||+|||.||.++.+.+++
T Consensus 379 ~~~~~G~I~idg~dI~~i-----------------------~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei 435 (567)
T COG1132 379 YDPTSGEILIDGIDIRDI-----------------------SLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEI 435 (567)
T ss_pred CCCCCCeEEECCEehhhc-----------------------CHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHH
Confidence 999999999966555444 234668889999999999999999999999887666677
Q ss_pred hHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHcc
Q 040758 630 SDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLS 708 (788)
Q Consensus 630 ~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~ 708 (788)
.+|||.+++++|+.. .|+||||. +|+|.+|||||||||+|||||++
T Consensus 436 ~~a~k~a~~~d~I~~---------------------------------lp~g~dt~vge~G~~LSgGQrQrlaiARall~ 482 (567)
T COG1132 436 EEALKLANAHEFIAN---------------------------------LPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482 (567)
T ss_pred HHHHHHhChHHHHHh---------------------------------CcccccceecCCCccCCHHHHHHHHHHHHHhc
Confidence 777776666555432 23799997 89999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||||+||+++|+.|++.+.+ +++|+|+||||+++++.||+|+||++|+.
T Consensus 483 ~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i 541 (567)
T COG1132 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRI 541 (567)
T ss_pred CCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999974 68999999999999999999999999974
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-69 Score=634.72 Aligned_cols=536 Identities=15% Similarity=0.182 Sum_probs=391.5
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
++.+++++++++++++ .++..+++.++..++.+..|++++.++|.+...+...+. .++.+++++..++
T Consensus 10 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~---~~~~~~~~~~~l~ 77 (582)
T PRK11176 10 WQTFRRLWPTIAPFKA---------GLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVL---KWMPLVVIGLMIL 77 (582)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHH---HHHHHHHHHHHHH
Confidence 4556778888887765 244444555556666678899999999976543322111 1111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++..+ ...+... .+...+|..+|.++.+.+. +++. .+|+++|++.+...+......++..++.
T Consensus 78 ~~~~~~~~~~----~~~~~~~-~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T PRK11176 78 RGITSFISSY----CISWVSG-KVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_pred HHHHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222111 1122222 3567789999999987765 3322 3799999999988777777778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
++.+++++++++|++++++++.+++.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~~~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~ 232 (582)
T PRK11176 153 IIGLFIMMFYYSWQLSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHH
Confidence 88888888899999999888887777777778888888877777888888888889999999999999999988765554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..+..............+..++.+.++++.+..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T PRK11176 233 VSNRMRQQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333222222222333333333333444556677888999999998877777777777777776666666777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
...+|+.++.+. ++.... +....+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~~~~ri~~~~~~---~~~~~~-----------------------~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i 366 (582)
T PRK11176 313 AACQTLFAILDL---EQEKDE-----------------------GKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKI 366 (582)
T ss_pred HHHHHHHHHhcC---CCcCCC-----------------------CCcCCCCCCCeEEEEEEEEecCCCCCccccCceEEe
Confidence 777777655332 111000 000011123469999999999865578999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+++.|+|||
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDY-----------------------TLASLRNQVALVS 423 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhc-----------------------CHHHHHhhceEEc
Confidence 99999999999999999999999999999999999976554333 2234567799999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
||+++|++||+|||.++.++ ..++++++++++.++++++.+. ++|+
T Consensus 424 Q~~~lf~~Ti~~Ni~~~~~~---------------------------------~~~~~~i~~al~~~~l~~~i~~lp~Gl 470 (582)
T PRK11176 424 QNVHLFNDTIANNIAYARTE---------------------------------QYSREQIEEAARMAYAMDFINKMDNGL 470 (582)
T ss_pred cCceeecchHHHHHhcCCCC---------------------------------CCCHHHHHHHHHHhCcHHHHHhccccc
Confidence 99999999999999997532 1245667777777777665554 4899
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
||. +++|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|.+ +++|+|+||||++.++.||+|++
T Consensus 471 dt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~ 550 (582)
T PRK11176 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILV 550 (582)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 996 899999999999999999999999999999999999999999999999976 58999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 551 l~~g~i 556 (582)
T PRK11176 551 VEDGEI 556 (582)
T ss_pred EECCEE
Confidence 999864
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-69 Score=624.81 Aligned_cols=516 Identities=19% Similarity=0.146 Sum_probs=356.9
Q ss_pred HHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLR 214 (788)
Q Consensus 135 ~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 214 (788)
++++++.+++++ .+++.++++++.+++.+..|++++.++|.+...+. .+. ....++.+++..+...+.
T Consensus 2 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~ 69 (529)
T TIGR02868 2 LRILPLLQPRTR---------RLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VLY--LSVAAVAVRAFGIGRAVF 69 (529)
T ss_pred hhHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hHH--HHHHHHHHHHHHHHHHHH
Confidence 356677777765 35556666777788888999999999997654332 111 111111111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 215 DYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.++... +.... ...+...+|.++|.|+.+.+. +++. .+|+++|++.+...+......++..++.++++
T Consensus 70 ~~~~~~----~~~~~-~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~ 144 (529)
T TIGR02868 70 RYLERL----VGHDA-ALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAA 144 (529)
T ss_pred HHHHHH----HHHHH-HHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 11122 223557899999999988775 3321 37999999999987776666777777777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhh-hhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHH
Q 040758 288 SNILYGIYPPLFVVLLVYSIGGTAISIYLGKGL-VTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366 (788)
Q Consensus 288 ~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~ 366 (788)
+++++.++|++++++++..++..++..++.++. ++..+..++..+++.+.+.|..+++++||+|+.|+.+.+++.+..+
T Consensus 145 ~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~ 224 (529)
T TIGR02868 145 VAAIALLSVPAALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADR 224 (529)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHH
Confidence 778889999998888777666655554444443 4444555667778888889999999999999999988765444433
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVI 446 (788)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 446 (788)
+..+...+.................+..++.++++++++..|.+|+|.+.+++.+...+..++..+...+..+.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (529)
T TIGR02868 225 ELLAAERRAARATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAA 304 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332222211111111122222222233334456677889999999988777766666666666655555666666777
Q ss_pred HHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCC
Q 040758 447 DRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526 (788)
Q Consensus 447 ~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~G 526 (788)
+|+.++.+. +....... . . .........+.|+|+||+|+|++ ++++|+|+||+|++|
T Consensus 305 ~ri~~~l~~---~~~~~~~~--------------~----~-~~~~~~~~~~~I~~~~vsf~Y~~-~~~vL~~isl~i~~G 361 (529)
T TIGR02868 305 ERIEEVTGA---KGPRPEGV--------------V----P-AAGALGLGKPTLELRDLSFGYPG-SPPVLDGVSLDLPPG 361 (529)
T ss_pred HHHHHHhcC---CCCcCCCC--------------C----C-CCcccCCCCceEEEEEEEEecCC-CCceeecceEEEcCC
Confidence 787665432 11100000 0 0 00000112346999999999975 457999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~ 606 (788)
|++|||||||||||||+++|+|+|+|++|+|.+||.|..+ . .+.+|++|+||||+|
T Consensus 362 ~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~-----------------------~-~~~lr~~i~~V~Q~~ 417 (529)
T TIGR02868 362 ERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSS-----------------------L-QDELRRRISVFAQDA 417 (529)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhh-----------------------H-HHHHHhheEEEccCc
Confidence 9999999999999999999999999999999996443221 1 235678899999999
Q ss_pred ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc
Q 040758 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT 685 (788)
Q Consensus 607 ~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~ 685 (788)
++|++||+|||+|+.++.+ ++++.++++.++++++..+ ++||||.
T Consensus 418 ~lF~~TI~eNI~~g~~~~~----------------------------------~e~i~~al~~a~l~~~i~~lp~GldT~ 463 (529)
T TIGR02868 418 HLFDTTVRDNLRLGRPDAT----------------------------------DEELWAALERVGLADWLRSLPDGLDTV 463 (529)
T ss_pred ccccccHHHHHhccCCCCC----------------------------------HHHHHHHHHHcCCHHHHHhCcccccch
Confidence 9999999999999865433 4455556666666554443 4899997
Q ss_pred -ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 686 -YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 686 -~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
+|+|.+|||||||||||||||+++|+|||||||||+||+++|+.|++.+.+ .++|+|+||||+
T Consensus 464 ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 464 LGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred hccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999999999976 589999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-68 Score=624.79 Aligned_cols=529 Identities=20% Similarity=0.211 Sum_probs=371.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCh--HHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQ--EQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~--~~~~~~ll~~~~~~~~~~~~ 210 (788)
+++++++++++|+ .+++.++++++..++.+..|++.+.++|... .+.. ..+. ..+.++.+++..+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 72 (574)
T PRK11160 4 LLPFLKLYKRHWF---------MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFN--YMLPAAGVRGAAIG 72 (574)
T ss_pred hHHHHHHHhhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHH--HHhHHHHHHHHHHH
Confidence 4457778888876 3666677777788888899999999999643 3221 0111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++.. .+... ....+...+|.++|+|+.+++. +++ + .+|+++|++.++..+...+..++..++.
T Consensus 73 ~~~~~~~~~----~~~~~-~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~ 147 (574)
T PRK11160 73 RTAGRYGER----LVSHD-ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVV 147 (574)
T ss_pred HHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222221 11112 2233567899999999998775 332 2 3899999999999877777777888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHH-HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTA-ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~-i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
+++.+++|++++|++++++++..++..+ +..++.++..+..++.++..+++...+.|..+++++||+|+.|+.+.+++
T Consensus 148 ~~~~~~~l~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~- 226 (574)
T PRK11160 148 ILVLTIGLSFFDLTLALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQL- 226 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHH-
Confidence 8878888999999999888766665544 34566677677777778888899999999999999999999999887644
Q ss_pred HHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEF----FTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHI-LGDFSLIVYQFQ 437 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~-~~~l~~~~~~~~ 437 (788)
++..+++.+...+..+... .......+..++.+.+++++ ..|.+|+|.+.+++.+.... ..++..+...+.
T Consensus 227 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~ 302 (574)
T PRK11160 227 ---EQTEQQWLAAQRRQANLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQ 302 (574)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333332222221 11111222222223334444 57889999876654432111 122222333334
Q ss_pred HHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCcccee
Q 040758 438 AISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVR 517 (788)
Q Consensus 438 ~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~ 517 (788)
.+.......+|+.++.+ .+.+.... ... ......+.|+|+||+|+|+++++++|+
T Consensus 303 ~~~~~~~s~~ri~~ll~---~~~~~~~~---------------------~~~-~~~~~~~~i~~~~v~f~y~~~~~~il~ 357 (574)
T PRK11160 303 HLGQVIASARRINEITE---QKPEVTFP---------------------TTS-TAAADQVSLTLNNVSFTYPDQPQPVLK 357 (574)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCCCCC---------------------ccc-CCCCCCCeEEEEEEEEECCCCCCccee
Confidence 44455666777765533 21110000 000 001123579999999999864467999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|+
T Consensus 358 ~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~ 414 (574)
T PRK11160 358 GLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADY-----------------------SEAALRQ 414 (574)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999976554333 2235678
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
+|+||||||++|++||+|||+++.++. +++++.++++.++++++.+
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~----------------------------------~~~~i~~al~~~~l~~~i~ 460 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNA----------------------------------SDEALIEVLQQVGLEKLLE 460 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCcc----------------------------------CHHHHHHHHHHcCCHHHHc
Confidence 899999999999999999999976432 3456777777777765444
Q ss_pred cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcC
Q 040758 678 RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFH 754 (788)
Q Consensus 678 ~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~ 754 (788)
.++||||. +|+|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ +++|+|+||||+++++.|
T Consensus 461 ~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~ 540 (574)
T PRK11160 461 DDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF 540 (574)
T ss_pred CccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhC
Confidence 47899997 999999999999999999999999999999999999999999999999976 589999999999999999
Q ss_pred CEEEEEccCCC
Q 040758 755 KRVLRISTVDQ 765 (788)
Q Consensus 755 D~Ilvl~~g~~ 765 (788)
|+|++|++|+.
T Consensus 541 d~i~~l~~G~i 551 (574)
T PRK11160 541 DRICVMDNGQI 551 (574)
T ss_pred CEEEEEeCCeE
Confidence 99999999975
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-68 Score=605.09 Aligned_cols=546 Identities=40% Similarity=0.674 Sum_probs=480.3
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++|.+.++||.++..+..+..++.+++++++.+.+++++..+.+.++|++...|...|+..+..+.++.++.+++
T Consensus 23 ~~~~~qfw~i~r~yw~~~~~~~~~~l~~~i~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~~l~~f~~ia~~~v~~ 102 (604)
T COG4178 23 TSLGRQFWMIARAYWASPVRKRAWLLLIGILALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQQLQVFAIIAGLLVLL 102 (604)
T ss_pred hHHHHHHHHHhhhhccCccchHHHHHHHHHHHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999888988887777777766777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcC---CCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQ---SIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~---~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.+...|+...+..+||.|++.+++.+||.+..||+++.. ...||||||+.+|+..+.+....+..+++..+++++++
T Consensus 103 ~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF 182 (604)
T COG4178 103 NVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISF 182 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999999999765 44699999999999999998888999999999999999
Q ss_pred HHHHHhh---------------hhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhcc
Q 040758 288 SNILYGI---------------YPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYA 352 (788)
Q Consensus 288 ~~il~~~---------------~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~ 352 (788)
.++||.+ ...++++++++++...+++.+++|++.+++.++++.|+++++.+++..+|.+.|.+|+
T Consensus 183 ~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~ 262 (604)
T COG4178 183 TGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYR 262 (604)
T ss_pred HHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Confidence 9998843 3456778888999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Q 040758 353 GEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLI 432 (788)
Q Consensus 353 ~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~ 432 (788)
+|+.|++.+.++|....+++.+......++.++...|+.+..+++..++++.++.|.+++|.+++..++|.++.+.++++
T Consensus 263 GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswf 342 (604)
T COG4178 263 GEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWF 342 (604)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888899999999988899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC
Q 040758 433 VYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK 512 (788)
Q Consensus 433 ~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~ 512 (788)
+..+..++...+...|+.++...++........... .. ......... ...|+++|++..-|+ +
T Consensus 343 i~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~--------------~~-~~~~~~~~~-~~~i~~~nl~l~~p~-~ 405 (604)
T COG4178 343 IDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPAR--------------TG-RRIDFDDNA-DHGITLENLSLRTPD-G 405 (604)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCc--------------cc-ccccccccc-cceeEEeeeeEECCC-C
Confidence 999999999999999999998766532211100000 00 000000011 457999999999986 5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
+..|+++||+|++||.+.|.||||||||||+|.|+|+||..+|+|.+.
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-------------------------------- 453 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-------------------------------- 453 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------------------------------
Confidence 588999999999999999999999999999999999999999999751
Q ss_pred ccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 593 NRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
....+.|+||.||+..||+||.|+||.... ..+++++.++|.++++
T Consensus 454 --~~~~~lflpQ~PY~p~GtLre~l~YP~~~~--------------------------------~~~d~~l~~vL~~vgL 499 (604)
T COG4178 454 --ADSALLFLPQRPYLPQGTLREALCYPNAAP--------------------------------DFSDAELVAVLHKVGL 499 (604)
T ss_pred --CCCceEEecCCCCCCCccHHHHHhCCCCCC--------------------------------CCChHHHHHHHHHcCc
Confidence 013489999999999999999999986542 1467899999999999
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcch
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTL 750 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~ 750 (788)
+++.+++ +....|...||+|||||||+||.|+++|++++|||+|||||+++|..+++.+++ .+.|+|.|+||.++
T Consensus 500 ~~L~~rl---~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl 576 (604)
T COG4178 500 GDLAERL---DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL 576 (604)
T ss_pred HHHHHHH---hccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence 9988875 445568888999999999999999999999999999999999999999999998 79999999999999
Q ss_pred hhcCCEEEEEcc
Q 040758 751 YDFHKRVLRIST 762 (788)
Q Consensus 751 ~~~~D~Ilvl~~ 762 (788)
..++++.+.+.+
T Consensus 577 ~~~h~~~l~l~~ 588 (604)
T COG4178 577 WNFHSRQLELLD 588 (604)
T ss_pred HHHHhhheeecc
Confidence 999999888865
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-68 Score=623.22 Aligned_cols=531 Identities=17% Similarity=0.184 Sum_probs=399.6
Q ss_pred HHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHHH
Q 040758 135 RRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFFVL 213 (788)
Q Consensus 135 ~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~~~ 213 (788)
+.++++++++|+ .+++.++++++..++.+..|++++.++|....... ..+. ++.+++++..++..+
T Consensus 3 ~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~i~~~~ 69 (571)
T TIGR02203 3 RRLWSYVRPYKA---------GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLW----WVPLVVIGLAVLRGI 69 (571)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhHHH----HHHHHHHHHHHHHHH
Confidence 456666666655 36666667777778888999999999996544332 2211 111111111111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 214 RDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLIS 286 (788)
Q Consensus 214 ~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~ 286 (788)
..++..++.. .....+...+|..+|+++.+.+. +++. .+|+++|++.+..........++..++.++.
T Consensus 70 ~~~~~~~~~~-----~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~ 144 (571)
T TIGR02203 70 CSFVSTYLLS-----WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIG 144 (571)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222211 12233567788889999887765 3322 3799999999998877777788888888888
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHH
Q 040758 287 FSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366 (788)
Q Consensus 287 ~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~ 366 (788)
+++++++++|++++++++..++.+++..++.++..+...+..+..+++.+.+.+..+|+++||.++.|+.+.+++.+.++
T Consensus 145 ~~~~l~~~~~~l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~ 224 (571)
T TIGR02203 145 LFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSN 224 (571)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHH
Confidence 88889999999999998888888888889999998888888888899999999999999999999999988765555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVI 446 (788)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~ 446 (788)
+..+...+..............+..+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~ 304 (571)
T TIGR02203 225 RNRRLAMKMTSAGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAA 304 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322222222333333334444555667788889999999999998888888888888877777777778888
Q ss_pred HHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCC
Q 040758 447 DRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEK 526 (788)
Q Consensus 447 ~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~G 526 (788)
+|+.++.+. +..... +........+.|+++||+|+|++.++++|+|+||+|++|
T Consensus 305 ~ri~~~l~~---~~~~~~-----------------------~~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G 358 (571)
T TIGR02203 305 ESLFTLLDS---PPEKDT-----------------------GTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPG 358 (571)
T ss_pred HHHHHHHcC---CCCCCC-----------------------CCCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCC
Confidence 887665332 111000 000001123569999999999865568999999999999
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~ 606 (788)
|+++|+|+||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|++|+||||+|
T Consensus 359 ~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~v~Q~~ 415 (571)
T TIGR02203 359 ETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADY-----------------------TLASLRRQVALVSQDV 415 (571)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhc-----------------------CHHHHHhhceEEccCc
Confidence 99999999999999999999999999999999965543333 2234567899999999
Q ss_pred ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc
Q 040758 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT 685 (788)
Q Consensus 607 ~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~ 685 (788)
++|++|++|||.++++. ..+++++.++++.++++++..+ ++|+||.
T Consensus 416 ~lf~~Ti~~Ni~~~~~~---------------------------------~~~~~~i~~~l~~~~l~~~i~~lp~gldt~ 462 (571)
T TIGR02203 416 VLFNDTIANNIAYGRTE---------------------------------QADRAEIERALAAAYAQDFVDKLPLGLDTP 462 (571)
T ss_pred ccccccHHHHHhcCCCC---------------------------------CCCHHHHHHHHHHcChHHHHHhCcCcccce
Confidence 99999999999997531 1245677788888888766555 4899997
Q ss_pred -ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 686 -YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 686 -~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
+++|.+|||||||||+||||++++|+|++||||||+||+++|+.+.+.|.+ +++|+|+||||++..+.||+|++|++
T Consensus 463 i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~ 542 (571)
T TIGR02203 463 IGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDD 542 (571)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeC
Confidence 899999999999999999999999999999999999999999999999976 58999999999999999999999999
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|+.
T Consensus 543 g~i 545 (571)
T TIGR02203 543 GRI 545 (571)
T ss_pred CEE
Confidence 864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-68 Score=672.73 Aligned_cols=533 Identities=18% Similarity=0.170 Sum_probs=359.4
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-H-HHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-E-QFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~-~~~~~ll~~~~~~~~~~~~ 210 (788)
.++++++++++|++ .+++.++++++..++..++|++++.++|.+..... . ......++++++.++..++
T Consensus 812 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~ 882 (1466)
T PTZ00265 812 NLRIVYREIFSYKK---------DVTIIALSILVAGGLYPVFALLYAKYVSTLFDFANLEANSNKYSLYILVIAIAMFIS 882 (1466)
T ss_pred hHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777765 24455555666777788999999999997653211 1 0111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-------DQRIVDDLSSFTGTALSFSLTLFNAA 281 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-------~~Ri~~Dv~~v~~~~~~~~~~ii~~~ 281 (788)
.++..++ ..+... .+.+.+|..+|.++.+++. |+++ .+|+++|++.++..+...+..++..+
T Consensus 883 ~~l~~~~--------~~~~~~-~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i 953 (1466)
T PTZ00265 883 ETLKNYY--------NNVIGE-KVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFI 953 (1466)
T ss_pred HHHHHHH--------HHHHHH-HHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 222222 3567899999999987664 6531 27999999999987776666777777
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHh-HH-----------------HHHHHHHHHhHHHHHHH
Q 040758 282 VDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLN-FL-----------------QEKKEADFRYGLVRVRE 343 (788)
Q Consensus 282 i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~-~~-----------------~~~~~~~~~~~~~~~~~ 343 (788)
+.+++.++++++++|++++++++. +.++...+.++.+... .. .++..++....+.|.+.
T Consensus 954 ~~~i~~~~~~~~~~~~l~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~ 1030 (1466)
T PTZ00265 954 VLFLVSMVMSFYFCPIVAAVLTGT---YFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFY 1030 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHh
Confidence 777777777888888887765432 2333334444332211 11 11223455666789999
Q ss_pred hHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Q 040758 344 NAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFN 423 (788)
Q Consensus 344 ~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~ 423 (788)
++++||+|+.|+++.+++.+..+...+...+..........+......+..++.++++++++..|.+|+|.+.+++.++.
T Consensus 1031 gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~ 1110 (1466)
T PTZ00265 1031 NMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFL 1110 (1466)
T ss_pred cHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 99999999999988765544443333222222111111122222223333444556677888999999999876654433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEee
Q 040758 424 HILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIED 503 (788)
Q Consensus 424 ~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~n 503 (788)
.....+..+...+..+.......+|+.++. +.+...+..+ .. ......+....+.|+|+|
T Consensus 1111 ~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll---~~~~~~~~~~--------------~~---~~~~~~~~~~~g~I~f~n 1170 (1466)
T PTZ00265 1111 FTGSYAGKLMSLKGDSENAKLSFEKYYPLI---IRKSNIDVRD--------------NG---GIRIKNKNDIKGKIEIMD 1170 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCcCCCCC--------------Cc---ccccccCCCCCceEEEEE
Confidence 222223333333444555666677766543 2221100000 00 000000112346799999
Q ss_pred eEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC------------------------------
Q 040758 504 LTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD------------------------------ 552 (788)
Q Consensus 504 vsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p------------------------------ 552 (788)
|+|+||++ +.++|+|+||+|++|+++|||||||||||||++||+|||+|
T Consensus 1171 VsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1250 (1466)
T PTZ00265 1171 VNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNV 1250 (1466)
T ss_pred EEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccc
Confidence 99999853 35799999999999999999999999999999999999999
Q ss_pred ------------------------CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcccccc
Q 040758 553 ------------------------GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM 608 (788)
Q Consensus 553 ------------------------~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l 608 (788)
++|+|++||.|..++ +.+.+|++||||||+|+|
T Consensus 1251 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~-----------------------~~~~lR~~i~~V~Qep~L 1307 (1466)
T PTZ00265 1251 GMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY-----------------------NLKDLRNLFSIVSQEPML 1307 (1466)
T ss_pred ccccccccccccccccccccccCCCCCeEEECCEEHHhC-----------------------CHHHHHhhccEeCCCCcc
Confidence 699999976655444 233568889999999999
Q ss_pred CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-cc
Q 040758 609 VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YE 687 (788)
Q Consensus 609 f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e 687 (788)
|++||+|||+||.++.+.+++.+|++.+++++|+.. .|+||||. +|
T Consensus 1308 F~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~---------------------------------LP~GydT~VGe 1354 (1466)
T PTZ00265 1308 FNMSIYENIKFGKEDATREDVKRACKFAAIDEFIES---------------------------------LPNKYDTNVGP 1354 (1466)
T ss_pred ccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHh---------------------------------CccccCCccCC
Confidence 999999999999766666666666666666555432 24799997 99
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 688 WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
+|.+|||||||||||||||+++|+||||||||||||+++|+.|+++|.+ .++|+|+||||+++++.||+|+||++
T Consensus 1355 ~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~ 1433 (1466)
T PTZ00265 1355 YGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNN 1433 (1466)
T ss_pred CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999975 38999999999999999999999999
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=613.84 Aligned_cols=512 Identities=18% Similarity=0.192 Sum_probs=368.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALA-DK-DQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~-~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
+.+.++++++.+++.+..|++.+.++|.+. .. +...+. .+++.+++..++..+..++..++. .. ....+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~ 75 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLAELL----PALGALALAVLLRALLGWLGERAA----AR-AAAAV 75 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHH----HHHHHHHHHHHHHHHHHHHHHHHH----HH-HHHHH
Confidence 556667778888889999999999999874 32 222221 111111111111122222222211 11 12235
Q ss_pred HHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.+.+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++.++.++++++.++|++++++++..+
T Consensus 76 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~ 155 (529)
T TIGR02857 76 KSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP 155 (529)
T ss_pred HHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67889999999988765 3321 3799999999998776666666766666666777788889998888887777
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+..++..++.++..+...+.++..+++.+.+.|..+++++||+|+.|+.+.+++.+..++..+...+..+..........
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02857 156 LIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLE 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77677777778777777777778888888889999999999999999988765544433333322222221111122222
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 388 GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
....+..++..+++++.++.|.+|+|.+.++..++..+..++..+...+..+......++|+.++.+ .+.... .
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~---~~~~~~--~- 309 (529)
T TIGR02857 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLD---APRPLA--G- 309 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcccC--C-
Confidence 2222223333334556667899999998877777777777777766666666677777777766533 111000 0
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
. ...+ ....+.|+++||+|+||++++++|+|+||+|++||++|||||||||||||+|+|+
T Consensus 310 ------------------~-~~~~-~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~ 369 (529)
T TIGR02857 310 ------------------K-APVT-AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLL 369 (529)
T ss_pred ------------------C-cCCC-CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 0 0000 0112469999999999864457999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|+|+|++|+|.+||.+..++ +.+.+|++++||+|+|++|++||+|||.++.+..
T Consensus 370 g~~~~~~G~I~~~g~~i~~~-----------------------~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~--- 423 (529)
T TIGR02857 370 GFVDPTEGSIAVNGVPLADA-----------------------DADSWRDQIAWVPQHPFLFAGTIAENIRLARPDA--- 423 (529)
T ss_pred cCCCCCCcEEEECCEehhhC-----------------------CHHHHHhheEEEcCCCcccCcCHHHHHhccCCCC---
Confidence 99999999999965544333 2235677899999999999999999999975432
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARL 705 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARA 705 (788)
+++++.++++.++++++.++ ++||||. +|+|.+||||||||++||||
T Consensus 424 -------------------------------~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRa 472 (529)
T TIGR02857 424 -------------------------------SDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARA 472 (529)
T ss_pred -------------------------------CHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHH
Confidence 34566666777776655544 4899997 89999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 706 LLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 706 Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|+++|+++|||||||+||+++|+.+++.+.+ .++|+|+||||+++++.||+|++|
T Consensus 473 l~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 473 FLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999976 689999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-67 Score=632.57 Aligned_cols=532 Identities=17% Similarity=0.166 Sum_probs=391.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
+++++++++++++ .+..+++++++..++.+..|++++.++|.+.. .+...+.. +++.+++..++..
T Consensus 127 ~~~~~~~~~~~~~---------~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~l~~----l~~~~~~~~~~~~ 193 (694)
T TIGR01846 127 FSWFIPAIIRYRK---------QFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLSTLSV----LALAMLAVAIFEP 193 (694)
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHH----HHHHHHHHHHHHH
Confidence 5677777777655 35566677777888889999999999997653 33222211 1111111111112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++..++ ...+ ...+...+|..+|.|+.+++. +++. .+|+ +|++.+++.+......++..++.++
T Consensus 194 ~~~~l~~~~----~~~~-~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~ 267 (694)
T TIGR01846 194 ALGGLRTYL----FAHL-TSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVV 267 (694)
T ss_pred HHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222221 1222 233567789999999988775 4432 2788 6999999877666666665555555
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++|++++|++++++++.+++++++..++.+++.+......++.++..+.+.|..+++++||+|+.|+.+.+++.+.+
T Consensus 268 ~~~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~ 347 (694)
T TIGR01846 268 VFLAVMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQL 347 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHH
Confidence 56678888999999998888888888888888888877777777888888888999999999999999998886555555
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
.+..+...+..............+..+..++.++++++++..|.+|+|.+.++..+...+..++..+...+..+......
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 427 (694)
T TIGR01846 348 AAYVAASFRVTNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIA 427 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444333322222222222233333444444556778889999999999888888888888887777777777777777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
++|+.++.+. +.+.... .....+...+.|+++||+|+|+++++++|+|+||+|++
T Consensus 428 ~~ri~~~l~~---~~e~~~~----------------------~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~ 482 (694)
T TIGR01846 428 LERLGDILNS---PTEPRSA----------------------GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKP 482 (694)
T ss_pred HHHHHHHHcC---CCCccCC----------------------CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECC
Confidence 8887765432 1110000 00001123457999999999976556799999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++||||+||||||||+|+|+|+|+|++|+|++||.+..++ +.+.+|++|+||||+
T Consensus 483 G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~-----------------------~~~~~r~~i~~v~q~ 539 (694)
T TIGR01846 483 GEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIA-----------------------DPAWLRRQMGVVLQE 539 (694)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhC-----------------------CHHHHHHhCeEEccC
Confidence 999999999999999999999999999999999976554433 223457789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t 684 (788)
+++|++||+|||.++.+.. +++++.++++.++++++..+ ++|+||
T Consensus 540 ~~lf~~ti~eNi~~~~~~~----------------------------------~~~~i~~a~~~~~l~~~i~~lp~gl~t 585 (694)
T TIGR01846 540 NVLFSRSIRDNIALCNPGA----------------------------------PFEHVIHAAKLAGAHDFISELPQGYNT 585 (694)
T ss_pred CeehhhhHHHHHhcCCCCC----------------------------------CHHHHHHHHHHcChHHHHHhCcCccCc
Confidence 9999999999999975433 34556666666666554443 489999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ++.|.+||||||||++|||||+++|++||||||||+||+++|+.+.+.|++ .++|+|+||||+++++.||+|++|+
T Consensus 586 ~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~ 665 (694)
T TIGR01846 586 EVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLE 665 (694)
T ss_pred EecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEe
Confidence 7 899999999999999999999999999999999999999999999999976 5899999999999999999999999
Q ss_pred cCCCC
Q 040758 762 TVDQN 766 (788)
Q Consensus 762 ~g~~~ 766 (788)
+|+..
T Consensus 666 ~G~i~ 670 (694)
T TIGR01846 666 KGQIA 670 (694)
T ss_pred CCEEE
Confidence 99753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-67 Score=616.25 Aligned_cols=532 Identities=17% Similarity=0.176 Sum_probs=382.2
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
..++++++++++++. .+.+.++++++..++.+..|++++.++|.+..+. .+....+.+++++ ++.
T Consensus 5 ~~~~~l~~~~~~~~~---------~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~~~~~~~~~~~----~~~ 69 (588)
T PRK13657 5 RLYARVLQYLGAEKR---------LGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIFPLLAAWAGFG----LFN 69 (588)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHHHHHHHHHHHH----HHH
Confidence 345666677766654 3566667777788888999999999999876432 1111111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++...+. .+.. +.+...++..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++..
T Consensus 70 ~~~~~~~~~~~----~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~ 144 (588)
T PRK13657 70 IIAGVLVARHA----DRLA-HRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVAL 144 (588)
T ss_pred HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112111111 1111 22344566788999988775 3322 37999999998876665666666666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
+..+++++.++|++++++++..++..++..++.++..+.....++..+++...+.+..+++++||.|+.++.+.+++.+.
T Consensus 145 ~~~~~~~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~ 224 (588)
T PRK13657 145 VVLLPLALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDI 224 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHH
Confidence 66667778889999988888878877788888888877777777778888888899999999999999999888655555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
.++..+...+.................+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~ 304 (588)
T PRK13657 225 ADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAP 304 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444433332222222222223333344445556677888999999999988888877777777766655555544445
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
..+++.++ ++.+...+.. .+....+...+.|+++||+|+||+ ++++|+|+||+++
T Consensus 305 ~~~~i~~l---~~~~~~~~~~---------------------~~~~~~~~~~~~I~~~~vsf~y~~-~~~iL~~inl~i~ 359 (588)
T PRK13657 305 KLEEFFEV---EDAVPDVRDP---------------------PGAIDLGRVKGAVEFDDVSFSYDN-SRQGVEDVSFEAK 359 (588)
T ss_pred HHHHHHHH---hCCCcccCCC---------------------CCCCCcCCCCCeEEEEEEEEEeCC-CCceecceeEEEC
Confidence 55554433 2221110000 000001112346999999999974 4579999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
|||+++|||+||||||||+|+|+|+|+|++|+|.+||.+..++ +...+|+.|+||||
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q 416 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV-----------------------TRASLRRNIAVVFQ 416 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC-----------------------CHHHHHhheEEEec
Confidence 9999999999999999999999999999999999976554433 22345778999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLD 683 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~ 683 (788)
+|++|++||+|||+++.++. +++++.++++.++++++..+ ++|+|
T Consensus 417 ~~~lf~~Ti~~Ni~~~~~~~----------------------------------~d~~i~~al~~~~l~~~i~~lp~gld 462 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGRPDA----------------------------------TDEEMRAAAERAQAHDFIERKPDGYD 462 (588)
T ss_pred CcccccccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHhCHHHHHHhCccccc
Confidence 99999999999999975432 34567777777777665554 58999
Q ss_pred cc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 684 TT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 684 t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|. +++|.+|||||||||+|||||+++|++||||||||+||+++|+.+++.|.+ .++|+|+||||++.++.||+|++|
T Consensus 463 t~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l 542 (588)
T PRK13657 463 TVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVF 542 (588)
T ss_pred chhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEE
Confidence 96 899999999999999999999999999999999999999999999999976 589999999999999999999999
Q ss_pred ccCCC
Q 040758 761 STVDQ 765 (788)
Q Consensus 761 ~~g~~ 765 (788)
++|+.
T Consensus 543 ~~G~i 547 (588)
T PRK13657 543 DNGRV 547 (588)
T ss_pred ECCEE
Confidence 99975
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-67 Score=617.29 Aligned_cols=532 Identities=17% Similarity=0.190 Sum_probs=375.2
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~ 209 (788)
++.++++.++.+++|+ .+.+.++++++.+.+.+..|++++.++|.+.. .+... ...+.+++++++..+
T Consensus 8 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~--~~~~~~~~~~~~~~~ 76 (592)
T PRK10790 8 WPTLKRLLAYGSPWRK---------PLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPL--GLVAGLAAAYVGLQL 76 (592)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch--hHHHHHHHHHHHHHH
Confidence 3445556666666554 35555666677777888999999999997643 22211 111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..+....+ ... ....+.+.+|..+|.++.+.+. +++. .+|+++|++.+...+......++..++
T Consensus 77 ~~~~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~ 151 (592)
T PRK10790 77 LAAGLHYAQSLL----FNR-AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAA 151 (592)
T ss_pred HHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222111 111 2223557889999999988775 3332 379999999999887777777777777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.++.++++++.++|++++++++..++.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.
T Consensus 152 ~~~~~~~~~~~~~~~l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~ 231 (592)
T PRK10790 152 LIGAMLVAMFSLDWRMALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMG 231 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHH
Confidence 77777778888999998887777666666666666666666666666677778888999999999999999987775554
Q ss_pred HHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNL-EFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISA 441 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 441 (788)
+..++..+...+........ .........+..++.+++++. +..|.+++|.+.+++.++..+..++..+...+..+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~ 310 (592)
T PRK10790 232 EASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQ 310 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333222111111000 111111111111111122222 5689999999988888888888888877777777777
Q ss_pred HHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeE
Q 040758 442 FSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521 (788)
Q Consensus 442 ~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl 521 (788)
.....+|+.++.+. +.... . . . ......+.|+++||+|+||+ ++++|+|+||
T Consensus 311 ~~~s~~ri~~~l~~---~~~~~--~-------------------~-~--~~~~~~~~i~~~~v~f~y~~-~~~il~~i~l 362 (592)
T PRK10790 311 AVVAGERVFELMDG---PRQQY--G-------------------N-D--DRPLQSGRIDIDNVSFAYRD-DNLVLQNINL 362 (592)
T ss_pred HHHHHHHHHHHhcC---CCccC--C-------------------C-C--ccCCCCCeEEEEEEEEEeCC-CCceeeceeE
Confidence 77778887665332 11000 0 0 0 00112356999999999984 4679999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|++||++||||+||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+|
T Consensus 363 ~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~-----------------------~~~~l~~~i~~ 419 (592)
T PRK10790 363 SVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSL-----------------------SHSVLRQGVAM 419 (592)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhC-----------------------CHHHHHhheEE
Confidence 9999999999999999999999999999999999999965544333 23356788999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||||++|++||+|||+++. +. +++++.++++.+++++..++ ++
T Consensus 420 v~Q~~~lF~~Ti~~NI~~~~-~~----------------------------------~d~~i~~a~~~~gl~~~i~~lp~ 464 (592)
T PRK10790 420 VQQDPVVLADTFLANVTLGR-DI----------------------------------SEEQVWQALETVQLAELARSLPD 464 (592)
T ss_pred EccCCccccchHHHHHHhCC-CC----------------------------------CHHHHHHHHHHcCcHHHHHhccc
Confidence 99999999999999999975 32 34556666666666654444 48
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I 757 (788)
||||. ++.|.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|++ .++|+|+||||++.++.||+|
T Consensus 465 Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~i 544 (592)
T PRK10790 465 GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTI 544 (592)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 99997 899999999999999999999999999999999999999999999999976 589999999999999999999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 545 i~l~~G~i 552 (592)
T PRK10790 545 LVLHRGQA 552 (592)
T ss_pred EEEECCEE
Confidence 99999975
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=611.38 Aligned_cols=535 Identities=18% Similarity=0.204 Sum_probs=391.3
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.++.++++++++++ .+.+.++++++..++.+..|++++.++|.+. ..+...+.....++++++ ++.
T Consensus 5 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~~~~~~~~~~~~~----~~~ 71 (576)
T TIGR02204 5 PLAALWPFVRPYRG---------RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGLLNRYFAFLLVVA----LVL 71 (576)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHHHHHHHHHHHHHH----HHH
Confidence 45667777766554 3556666777888888999999999999744 333222211111111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
.+..++..++. .++ ...+...+|..+|.++.+.+. +++. .+|+++|++.+...+...+..++..++.+
T Consensus 72 ~~~~~~~~~~~----~~~-~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~ 146 (576)
T TIGR02204 72 ALGTAARFYLV----TWL-GERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMC 146 (576)
T ss_pred HHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222221111 122 223567788999999987765 3321 37999999999887666666777777777
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
++++++++.++|++++++++..++.+++..++.++..+..+...+..+++.+.+.|..+++++||+|+.|+.+.+++.+.
T Consensus 147 ~~~~~~~~~~~~~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~ 226 (576)
T TIGR02204 147 IGGLIMMFITSPKLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGA 226 (576)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHH
Confidence 77777888899999998888877777778888888888888888888899999999999999999999999888666555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
.++..+...+.................+..++.+.+++++++.|.+|+|.+.++..++..+..++..+...+..+.....
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~ 306 (576)
T TIGR02204 227 VEKAYEAARQRIRTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAG 306 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544443332222111222222222233334445567788899999999988888888888888888777777777778
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEE
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVI 523 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i 523 (788)
..+|+.++.+. +++.+... ... .......+.|+++||+|+||+++ +++|+|+||+|
T Consensus 307 ~~~ri~~~l~~---~~~~~~~~-------------------~~~-~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i 363 (576)
T TIGR02204 307 AAERLIELLQA---EPDIKAPA-------------------HPK-TLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTV 363 (576)
T ss_pred HHHHHHHHhCC---CCcCCCCC-------------------CCc-cCCcCCCceEEEEEEEEECCCCCCCccccceeEEe
Confidence 88887665332 11100000 000 00011234699999999998533 67999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
+|||+++|+||||||||||+|+|+|+|+|++|+|.+||.+..++ +...++++|+|+|
T Consensus 364 ~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~-----------------------~~~~~~~~i~~~~ 420 (576)
T TIGR02204 364 RPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQL-----------------------DPAELRARMALVP 420 (576)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhc-----------------------CHHHHHHhceEEc
Confidence 99999999999999999999999999999999999965543322 2224567899999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSL 682 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~ 682 (788)
|+|++|++||+|||.++.++. +++++.++++.+++.+..++ ++|+
T Consensus 421 Q~~~lf~~Ti~~Ni~~~~~~~----------------------------------~~~~~~~~l~~~~l~~~i~~l~~gl 466 (576)
T TIGR02204 421 QDPVLFAASVMENIRYGRPDA----------------------------------TDEEVEAAARAAHAHEFISALPEGY 466 (576)
T ss_pred cCCccccccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHcCcHHHHHhCCCCC
Confidence 999999999999999976432 34566777777777665554 4799
Q ss_pred ccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
++. +++|.+||||||||++||||++++|++||||||||+||+++|+.+++.|++ +++|+|+||||++..+.||+|++
T Consensus 467 ~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~ 546 (576)
T TIGR02204 467 DTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVV 546 (576)
T ss_pred CceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEE
Confidence 996 899999999999999999999999999999999999999999999999876 58999999999999999999999
Q ss_pred EccCCC
Q 040758 760 ISTVDQ 765 (788)
Q Consensus 760 l~~g~~ 765 (788)
|++|+.
T Consensus 547 l~~g~~ 552 (576)
T TIGR02204 547 MDQGRI 552 (576)
T ss_pred EECCEE
Confidence 999974
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-66 Score=612.64 Aligned_cols=571 Identities=27% Similarity=0.398 Sum_probs=415.0
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~ 209 (788)
+...+++++++++|||++++ +..+++.+++.++.+++++..|++.+.++|.+..++...+...++.+++++++..+
T Consensus 75 ~~~~~~~l~~~~~p~~~~~~----~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~ 150 (659)
T TIGR00954 75 FLGKLDFLLKILIPRVFCKE----TGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASF 150 (659)
T ss_pred HHHHHHHHHHHHcCcccchH----HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 34557788999999998654 23455566666777889999999999999998877665554433333333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS-IIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFS 288 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~-~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~ 288 (788)
+..+..++...+...+|.+++.++..+++.+..++++...+ -.+++++|+++|++.+...+...+..++..++++++++
T Consensus 151 ~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~ 230 (659)
T TIGR00954 151 INSAIKYLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDSRIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYS 230 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666677777888887777666665554444332211 13566799999999999988888888999999998888
Q ss_pred HHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 289 NILYG-IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 289 ~il~~-~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
++|+. ++|.++++++++.|+.+++..++++++.+...+.++.++++++.+.|.++|+++||+|++|+.|.+++.+.+++
T Consensus 231 ~~L~~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~ 310 (659)
T TIGR00954 231 FKLLTALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYR 310 (659)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77776 88999998988999999999999999999999999999999999999999999999999999999877777766
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHH-HHHHh-c----CcccHHHHHHHHH----HHHHHHHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNLEFFTSGYRY-LIQILPAAVV-APMYF-S----GKIEFGVINQSVS----AFNHILGDFSLIVYQF 436 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~-~----G~it~G~l~~~~~----~~~~~~~~l~~~~~~~ 436 (788)
..+...+..........+...+.. ....+..+++ .+.+. . |.+|+|.+.+.+. ++..+..++..+...+
T Consensus 311 l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~ 390 (659)
T TIGR00954 311 LVEHLNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAG 390 (659)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665544443322222222222211 1122222222 22222 2 7899997665322 2445566677777777
Q ss_pred HHHHHHHHHHHHhHhhhhhcccccCCCCCch-hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccc
Q 040758 437 QAISAFSAVIDRLGEFDDVLDSSSSKNLSEP-LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATL 515 (788)
Q Consensus 437 ~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~v 515 (788)
..+.....+.+|+.++.+..++........+ ..............+. ..+....+...+.|+++||+|+|++ ++++
T Consensus 391 ~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~nv~~~~~~-~~~i 467 (659)
T TIGR00954 391 RDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNL--VPGRGIVEYQDNGIKFENIPLVTPN-GDVL 467 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccc--cccccccccCCCeEEEEeeEEECCC-CCee
Confidence 7788888889998887654332110000000 0000000000000000 0000001113457999999999974 4579
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+|.++ .
T Consensus 468 l~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~----------------------------------~ 513 (659)
T TIGR00954 468 IESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKP----------------------------------A 513 (659)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeec----------------------------------C
Confidence 999999999999999999999999999999999999999999862 1
Q ss_pred cceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccc
Q 040758 596 SRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 675 (788)
+++++||||+|++|++|++|||.|+....+.. .....++++.++++.+++++.
T Consensus 514 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~---------------------------~~~~~~~~i~~~l~~~~l~~~ 566 (659)
T TIGR00954 514 KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDMK---------------------------RRGLSDKDLEQILDNVQLTHI 566 (659)
T ss_pred CCcEEEECCCCCCCCcCHHHHHhcCCChhhhh---------------------------ccCCCHHHHHHHHHHcCCHHH
Confidence 34599999999999999999999874311100 001245678889999999887
Q ss_pred cccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCC
Q 040758 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 676 ~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D 755 (788)
.+++.|+|+..+++.+||||||||++|||||+++|++||||||||+||+++++.+++.+++.|+|+|+||||+++.++||
T Consensus 567 ~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~d 646 (659)
T TIGR00954 567 LEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYHE 646 (659)
T ss_pred HhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhCC
Confidence 77788999987788999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred EEEEEccCCCCCCCCCeEE
Q 040758 756 RVLRISTVDQNSSQSNWKL 774 (788)
Q Consensus 756 ~Ilvl~~g~~~~~~~~~~~ 774 (788)
++++|+. +|+|++
T Consensus 647 ~il~l~~------~g~~~~ 659 (659)
T TIGR00954 647 YLLYMDG------RGGYQF 659 (659)
T ss_pred EEEEEeC------CCCccC
Confidence 9999963 578974
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-66 Score=608.39 Aligned_cols=531 Identities=18% Similarity=0.154 Sum_probs=382.9
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
.++++++++++||+ .+++.++++++..++.+..|++++.++|.+..++.. . . .++++++..++.+
T Consensus 6 ~~~~l~~~l~~~k~---------~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~-~-~----~~~~~~~~~~~~~ 70 (585)
T TIGR01192 6 VYVRALSYLNVHKN---------RVLLIVIANITLAAITIAEPILFGRIIDAISSKSDV-L-P----TLALWAGFGVFNT 70 (585)
T ss_pred HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-H-H----HHHHHHHHHHHHH
Confidence 46778888888876 366667777888888899999999999987654321 1 1 1111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++...+. ... ...+...+|.++|.|+.+++. +++. .+|+++|++.+...+...+..++..++.++
T Consensus 71 ~~~~~~~~~~----~~~-~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~ 145 (585)
T TIGR01192 71 IAYVLVAREA----DRL-AHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALF 145 (585)
T ss_pred HHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222221 111 122456677889999988775 4432 279999999998876666666666667776
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
.++++++.++|++++++++..++..++..++.++..+.....++..+++.+.+.|..+++++||+|+.|+.+.+++.+..
T Consensus 146 ~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~ 225 (585)
T TIGR01192 146 LLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFT 225 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHH
Confidence 66677888999999999888888888888888888777777777788888888999999999999999998876555544
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
++..+...+.................+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+......
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 305 (585)
T TIGR01192 226 NNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAK 305 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333322221111111122222233334444556678888999999999887777777777766666555555555566
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++. +.+...... .+....+...+.|+++||+|+|++ ++++|+|+||+|++
T Consensus 306 ~~ri~~~~---~~~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~i~~~i~~ 360 (585)
T TIGR01192 306 LEDFFDLE---DSVFQREEP---------------------ADAPELPNVKGAVEFRHITFEFAN-SSQGVFDVSFEAKA 360 (585)
T ss_pred HHHHHHHH---cCCccccCC---------------------ccCCCCCCCCCeEEEEEEEEECCC-CCccccceeEEEcC
Confidence 66665443 221110000 000001112346999999999974 45789999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++||+||||||||||+++|+|+|+|++|+|.+||.+..++ +.+.+|+.++||||+
T Consensus 361 G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~q~ 417 (585)
T TIGR01192 361 GQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV-----------------------TRESLRKSIATVFQD 417 (585)
T ss_pred CCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC-----------------------CHHHHHhheEEEccC
Confidence 999999999999999999999999999999999965443322 122456789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t 684 (788)
|++|++|++|||.++.++. +++++.++++.+++++... .++|++|
T Consensus 418 ~~lf~~ti~~Ni~~~~~~~----------------------------------~~~~~~~a~~~~~~~~~i~~l~~g~~t 463 (585)
T TIGR01192 418 AGLFNRSIRENIRLGREGA----------------------------------TDEEVYEAAKAAAAHDFILKRSNGYDT 463 (585)
T ss_pred CccCcccHHHHHhcCCCCC----------------------------------CHHHHHHHHHHhCcHHHHHhccccccc
Confidence 9999999999999975432 2345556666666655433 4589999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ++++.+|||||||||+|||||+++|++||||||||+||+++|+.+.+.|.+ .++|+|+||||++.++.||+|++|+
T Consensus 464 ~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~ 543 (585)
T TIGR01192 464 LVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLD 543 (585)
T ss_pred hhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEE
Confidence 6 899999999999999999999999999999999999999999999999975 5899999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 544 ~G~i 547 (585)
T TIGR01192 544 QGRL 547 (585)
T ss_pred CCEE
Confidence 9875
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-66 Score=600.47 Aligned_cols=517 Identities=19% Similarity=0.210 Sum_probs=371.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
.++..++++++..++.+..|++++.++|.+. .++...+. .+++++++..++..+..++..++ ... ....+
T Consensus 7 ~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~ 77 (544)
T TIGR01842 7 TFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVPTLL----MLTVLALGLYLFLGLLDALRSFV----LVR-IGEKL 77 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHH----HHHHHHHHHHHHHHHHHHHHHHH----HHH-HHHHH
Confidence 3566677777888888999999999999764 33322221 11111111111111112222111 111 22335
Q ss_pred HHHhhhhhHHHHhcCCCCCC--chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSIIDN--PDQRIVDDLSSFTGTALS-FSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~~~~--~~~Ri~~Dv~~v~~~~~~-~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
...+|..+|.|+.+.+.... ..+++++|++.+.+.+.. ....++..++.++ ++++++.++|++++++++..++.++
T Consensus 78 ~~~lr~~~~~~ll~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 78 DGALNQPIFAASFSATLRRGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHHHHHHHhcCcccCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 67789999999988876322 257899999999886554 2333444444333 3457888999998888777776666
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++.++..+..+..++..+++...+.|..+++++||+|+.|+.+.+++.+..++..+...+.................
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666677777888888899999999999999999888655555554443333322222222222222333
Q ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhh
Q 040758 392 LIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKI 471 (788)
Q Consensus 392 ~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~ 471 (788)
+..++.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......+|+.++.+. +.+.. .
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~---~~~~~--~----- 306 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLAN---YPSRD--P----- 306 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---Ccccc--C-----
Confidence 3344445567788889999999998888888888888887777777777777888888765432 11100 0
Q ss_pred hhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 472 CLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
. ...+...+.++++||+|+|+++++++|+|+||++++||+++||||||||||||+++|+|+|+
T Consensus 307 ----------------~-~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 307 ----------------A-MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred ----------------C-CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 0 00011234699999999998655689999999999999999999999999999999999999
Q ss_pred CCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH
Q 040758 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 552 p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
|++|+|.+||.+..++ +...+|+.++||||+|++|++|++|||.++..+.
T Consensus 370 ~~~G~i~~~g~~i~~~-----------------------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~------- 419 (544)
T TIGR01842 370 PTSGSVRLDGADLKQW-----------------------DRETFGKHIGYLPQDVELFPGTVAENIARFGENA------- 419 (544)
T ss_pred CCCceEEECCEehhhC-----------------------CHHHHhhheEEecCCcccccccHHHHHhccCCCC-------
Confidence 9999999965543322 1224567899999999999999999998754322
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSK 709 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~ 709 (788)
+++++.++++.++++++.+. ++|++|. +++|.+||||||||++|||||+++
T Consensus 420 ---------------------------~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~ 472 (544)
T TIGR01842 420 ---------------------------DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGD 472 (544)
T ss_pred ---------------------------CHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcC
Confidence 33455566666666554444 4799996 899999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 710 PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 710 p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
|++||||||||+||+++++.+.+.|.+ .|+|+|+||||++..+.||+|++|++|+..
T Consensus 473 ~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~ 532 (544)
T TIGR01842 473 PKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIA 532 (544)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999998875 479999999999988999999999998653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-68 Score=629.45 Aligned_cols=434 Identities=21% Similarity=0.269 Sum_probs=317.7
Q ss_pred hcCCCCCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 040758 247 QSQSIIDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLV 321 (788)
Q Consensus 247 ~~~~~~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~ 321 (788)
|..+|||.. .+|+++|++.+++.+..-+-.++..+.++++.+++-+...|+|+++++.+.|+.++....+.+-+.
T Consensus 117 Qdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltlv~l~~~Pli~~~g~~~a~~~~ 196 (1228)
T KOG0055|consen 117 QDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTLVMLSFIPLIAIAGGLLARFLS 196 (1228)
T ss_pred CccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666643 379999999999877666666777777777666677778899999999999988888888888888
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHH
Q 040758 322 TLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQ----ILP 397 (788)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 397 (788)
+...++++..++-.....+++.+++||.+|++|+.|.+ +|.+..+...+...+.....-+.....++.. ...
T Consensus 197 ~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~----ry~~~L~~~~k~gi~~g~~~G~~~G~~~~~~~~~~a~~ 272 (1228)
T KOG0055|consen 197 KLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIE----RYSKALENALKFGIKKGLFKGLGLGFTFFLLFASYALA 272 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 88877777777666666899999999999999999985 5555555544444333222211111111111 111
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhc
Q 040758 398 AAVVAPMYFSGKIEFGVINQSVSAFNHILGD--FSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTY 475 (788)
Q Consensus 398 ~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~--l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~ 475 (788)
+.++..++..+..+.|.+...+.+ -+++. +......+..+........++.+ +.+..+
T Consensus 273 ~WyG~~li~~~~~~~g~v~~v~~~--vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~---~i~~~~--------------- 332 (1228)
T KOG0055|consen 273 FWYGSTLILNGGYNGGDVITVFFS--VLIGGMSLGQASPHLSAFAKARAAAYRIFE---TIDRKP--------------- 332 (1228)
T ss_pred HHHHHHHHhcCCCCCceEEEEEee--hhhhhhhhhccccchHHHhccccchHHHHH---HhcCCC---------------
Confidence 222333444455555643211100 00110 11111111222222222233222 122111
Q ss_pred cccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC
Q 040758 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554 (788)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~ 554 (788)
.+++.. .+........|.|+|+||+|+||.++ .++|+|+||+|++||++||||||||||||+++||.|||+|++
T Consensus 333 -~i~~~~----~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~ 407 (1228)
T KOG0055|consen 333 -SIDPYS----KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTS 407 (1228)
T ss_pred -CCCccc----ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCC
Confidence 111110 01112334678999999999999753 369999999999999999999999999999999999999999
Q ss_pred ceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHH
Q 040758 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAK 634 (788)
Q Consensus 555 G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~ 634 (788)
|+|++||.|.++++ .+.+|.+||+|.|+|.||++||+|||.||.++++.+++.+|||
T Consensus 408 G~V~idG~di~~~~-----------------------~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k 464 (1228)
T KOG0055|consen 408 GEVLIDGEDIRNLN-----------------------LKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAK 464 (1228)
T ss_pred ceEEEcCccchhcc-----------------------hHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHH
Confidence 99999777665552 2356778999999999999999999999999999999999999
Q ss_pred hcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEE
Q 040758 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIV 713 (788)
Q Consensus 635 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iL 713 (788)
.+++++|+...+ +||+|. +|+|.+|||||||||||||||++||+||
T Consensus 465 ~ana~~fi~~lp---------------------------------~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~IL 511 (1228)
T KOG0055|consen 465 AANAHDFILKLP---------------------------------DGYDTLVGERGVQLSGGQKQRIAIARALVRNPKIL 511 (1228)
T ss_pred HccHHHHHHhhH---------------------------------HhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEE
Confidence 999887765422 689997 9999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 714 LLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 714 iLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||+++|+.++++|++ .|+|+|+||||++++++||+|++|++|+.
T Consensus 512 LLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~I 565 (1228)
T KOG0055|consen 512 LLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKI 565 (1228)
T ss_pred EecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEE
Confidence 99999999999999999999987 69999999999999999999999999975
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-66 Score=568.70 Aligned_cols=522 Identities=17% Similarity=0.208 Sum_probs=332.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 147 SDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALA--DKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALR 224 (788)
Q Consensus 147 ~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~ 224 (788)
.++.+..+..++.++++.+....+.+..|++++.++|.+. +..+..+......++++++. .....++..
T Consensus 22 ~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~ia-r~~s~~F~e-------- 92 (591)
T KOG0057|consen 22 PKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIA-RLGSSVFNE-------- 92 (591)
T ss_pred ecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHH-HHHHHHHHH--------
Confidence 3444555566666666666667788999999999999874 33331111111111111111 111111111
Q ss_pred HHHHHHHHHHHHHhh---hhhHHHHhcCCC--CCCch----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 225 WRSWMTKYYMERYLK---DQTFYKIQSQSI--IDNPD----QR-IVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGI 294 (788)
Q Consensus 225 ~~~~l~~~~~~~~Lr---~~~f~~l~~~~~--~~~~~----~R-i~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~ 294 (788)
.+...+.+..++..| .++|.|+.+++. +.++. +| +..-..++..++...+..++..++.+.....++.+-
T Consensus 93 l~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~ 172 (591)
T KOG0057|consen 93 LRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYK 172 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222222222 345666655443 22221 22 222333444444444455555555555444444433
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHH
Q 040758 295 YPP-LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLT 373 (788)
Q Consensus 295 ~~~-L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~ 373 (788)
... .+++.++.+..+..++.....+..+...+..++.......+-+++.|.++||+||.|++|.+++ .....++.
T Consensus 173 ~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y----~~~l~~~~ 248 (591)
T KOG0057|consen 173 FGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRY----DGSLKTYE 248 (591)
T ss_pred hchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHH----HHHHHHHH
Confidence 333 3333344444444444444444444444445555566666789999999999999999999644 44444443
Q ss_pred HHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 374 RLLISS----RNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRL 449 (788)
Q Consensus 374 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl 449 (788)
+...+. ..+++.+..+..+.....+..+..-...|.+|+|.+....+.+.++..++..+...+..+.+. +
T Consensus 249 ~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~------l 322 (591)
T KOG0057|consen 249 RAGLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQA------L 322 (591)
T ss_pred HhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHH------H
Confidence 333322 222333322211111111222333456789999998766665555555554444333322211 1
Q ss_pred HhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEE
Q 040758 450 GEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHL 529 (788)
Q Consensus 450 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~i 529 (788)
....+.+...+.. ..+. ..+.+.....+.|+|+||+|+|++ ++++|+++||+|++||++
T Consensus 323 ~Dm~~~~~l~~~~------~~i~--------------~~~~~i~~~~~~I~F~dV~f~y~~-k~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 323 TDMRTLFILLEVD------EDIQ--------------EAALPIELFGGSIEFDDVHFSYGP-KRKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HhHHHHHhhhhhh------hhhh--------------hccCCcccCCCcEEEEeeEEEeCC-CCceecceeEEecCCCEE
Confidence 1111111110000 0000 001122234567999999999985 667999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccC
Q 040758 530 LVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV 609 (788)
Q Consensus 530 aIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf 609 (788)
||||+|||||||++|+|.||++ ++|+|++||.|..++ +++.+|+.|||||||..||
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~-----------------------~~~SlR~~Ig~VPQd~~LF 437 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEV-----------------------SLESLRQSIGVVPQDSVLF 437 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhh-----------------------ChHHhhhheeEeCCccccc
Confidence 9999999999999999999999 999999966554433 3446788899999999999
Q ss_pred CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccC
Q 040758 610 LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEW 688 (788)
Q Consensus 610 ~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~ 688 (788)
++||.+||.||++..+.+++.++||.++.|+.++. .++||+|. ||+
T Consensus 438 ndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~---------------------------------l~~GY~T~VGer 484 (591)
T KOG0057|consen 438 NDTILYNIKYGNPSASDEEVVEACKRAGLHDVISR---------------------------------LPDGYQTLVGER 484 (591)
T ss_pred chhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHh---------------------------------ccccchhhHhhc
Confidence 99999999999998888777777777777654432 23799996 999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|..|||||||||+||||++|||||+++|||||+||.+||+++.+.+.+ .|+|+|+|+||+++++.||+|+++++|..
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v 563 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTV 563 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCee
Confidence 999999999999999999999999999999999999999999999876 69999999999999999999999999964
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-69 Score=574.96 Aligned_cols=533 Identities=19% Similarity=0.215 Sum_probs=367.7
Q ss_pred HhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 040758 140 VAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYY-LGAFAGGIPFFVLRDYAR 218 (788)
Q Consensus 140 ~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~~~~ 218 (788)
...||-|.+..+......+...++..+.-.+.+..|.+.+.++|.+...+. +.....+. +.+..+.... ...+++.
T Consensus 200 ~~~~ylwp~~~~alql~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~--~~~~~~~~~v~L~flqg~g-tgsG~~~ 276 (790)
T KOG0056|consen 200 TVAPYLWPTKSIALQLRVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDT--FQYSLVFLYVFLKFLQGGG-TGSGFLN 276 (790)
T ss_pred EeccccccCCCcchhHHHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcch--hhHHHHHHHHHHHHHhcCC-ccccchh
Confidence 445666655555444444444444455556778899999999999875543 22221111 1111110000 0001111
Q ss_pred HHHHHHHHHH--H-HHHHHHHHhhhhhHHHHhcCCCC---CCc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 040758 219 ETLALRWRSW--M-TKYYMERYLKDQTFYKIQSQSII---DNP---DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF-S 288 (788)
Q Consensus 219 ~~l~~~~~~~--l-~~~~~~~~Lr~~~f~~l~~~~~~---~~~---~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~-~ 288 (788)
..|+. . -..+..+.+...+|.|+.+++.- ... .=|+++.-.............+...+++++.. +
T Consensus 277 -----nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvtll~yvVF~i~PtllDl~va~v 351 (790)
T KOG0056|consen 277 -----NLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVTLLEYVVFQIGPTLLDLGVAMV 351 (790)
T ss_pred -----hhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhhHHHHHHhhcccHHHHhhhhhh
Confidence 11111 1 12233455666788888877652 111 11222111111112223334455555554432 3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 289 NILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 289 ~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.+...++||..+++++....+..++..+..+..+..++...+..+-+..-.+++-|.|+||-|++|++|.+ +|++.
T Consensus 352 YF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEve----rYreA 427 (790)
T KOG0056|consen 352 YFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVE----RYREA 427 (790)
T ss_pred hhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHH----HHHHH
Confidence 34556799999999999888888777777666665555555555556666899999999999999999985 66666
Q ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHH---HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISS-RNLEFFTSGYRYLI---QILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSA 444 (788)
Q Consensus 369 ~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 444 (788)
..++.+...+. ..+++....-+.++ .+...+.++|++..+..|+|+++.+..+..++..++.++...+.++....-
T Consensus 428 il~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfi 507 (790)
T KOG0056|consen 428 ILKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFI 507 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhh
Confidence 66655544332 22222222212221 222233456777789999999888888888888888887776666654333
Q ss_pred HHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEe
Q 040758 445 VIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVIN 524 (788)
Q Consensus 445 ~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~ 524 (788)
-++++. ++++++.+. .+.++..+....+|.|+|+||+|.|++ ++++|+||||+++
T Consensus 508 DmEnmf---dllkee~eV---------------------vd~P~a~pl~~~~G~i~fsnvtF~Y~p-~k~vl~disF~v~ 562 (790)
T KOG0056|consen 508 DMENMF---DLLKEEPEV---------------------VDLPGAPPLKVTQGKIEFSNVTFAYDP-GKPVLSDISFTVQ 562 (790)
T ss_pred hHHHHH---HHhhcCchh---------------------hcCCCCCCccccCCeEEEEEeEEecCC-CCceeecceEEec
Confidence 344433 333322110 111122333446789999999999975 7899999999999
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
||+++|||||||+||||++++|.||||.++|.|.+||.|.+.. ...++|++||+|||
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnv-----------------------t~~SLRs~IGVVPQ 619 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNV-----------------------TQSSLRSSIGVVPQ 619 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHH-----------------------HHHHHHHhcCcccC
Confidence 9999999999999999999999999999999999965544333 22356888999999
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|..||++||..||.|+.+.++.+++.+|||+|+.|+.+.. -|+||+|
T Consensus 620 DtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~---------------------------------fPegY~t 666 (790)
T KOG0056|consen 620 DTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQ---------------------------------FPEGYNT 666 (790)
T ss_pred cceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhc---------------------------------Cchhhhh
Confidence 9999999999999999999999999999999888765543 2478999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. ||+|-.|||||||||||||+++++|.|++|||||||||..+|+.||.+|.+ .++|.|+|+||++++-+||.|++++
T Consensus 667 ~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~ 746 (790)
T KOG0056|consen 667 RVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVIS 746 (790)
T ss_pred hhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEe
Confidence 6 999999999999999999999999999999999999999999999999987 7999999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|..
T Consensus 747 ~G~I 750 (790)
T KOG0056|consen 747 NGRI 750 (790)
T ss_pred CCeE
Confidence 9965
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-64 Score=592.83 Aligned_cols=511 Identities=15% Similarity=0.145 Sum_probs=361.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 040758 165 FATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFY 244 (788)
Q Consensus 165 ~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~ 244 (788)
++.+++.+..|++++.++|.+..+... ... ...+++++++..+...+..++.. .+... ....+...+|..+|.
T Consensus 5 ~~~~~~~~~~p~~~~~iid~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~lr~~l~~ 77 (569)
T PRK10789 5 IIIAMLQLIPPKVVGIIVDGVTEQHMT-TGQ-ILMWIGTMVLIAVVVYLLRYVWR----VLLFG-ASYQLAVELREDFYR 77 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCcc-hhH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHH
Confidence 445566778899999999976543211 111 11111111111111112222211 11122 223356778999999
Q ss_pred HHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHHH
Q 040758 245 KIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL-YGIYPPLFVVLLVYSIGGTAISIYL 316 (788)
Q Consensus 245 ~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il-~~~~~~L~l~~ll~~~~~~~i~~~~ 316 (788)
|+.+.+. +++ . .+|+++|++.+.......+..++..++..+.+++++ +.++|++++++++..++.+++..++
T Consensus 78 ~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~ 157 (569)
T PRK10789 78 QLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRY 157 (569)
T ss_pred HHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9988765 332 2 379999999998655444455555544444444444 4688989888888878888888888
Q ss_pred hhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040758 317 GKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQIL 396 (788)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (788)
.++..+.....++..+++.+.+.|...++++||+|+.|+.+.+++.+..++..+...+.................+..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (569)
T PRK10789 158 GDQLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLL 237 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888777777778888888889999999999999999988865544444333332222111111111111222233334
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhcc
Q 040758 397 PAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYC 476 (788)
Q Consensus 397 ~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~ 476 (788)
.++++++++..|.+|+|.+.++..++..+..++..+...+..+.......+|+.++.+ .+.....
T Consensus 238 ~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~---~~~~~~~------------ 302 (569)
T PRK10789 238 AIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLA---EAPVVKD------------ 302 (569)
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCcccC------------
Confidence 4455678888999999999888877777777777766666666666777788766532 2111000
Q ss_pred ccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 477 SVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
+....+...+.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+++|+|+|+|++|+
T Consensus 303 -----------~~~~~~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 371 (569)
T PRK10789 303 -----------GSEPVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD 371 (569)
T ss_pred -----------CCCCCCCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence 000001123469999999999864567999999999999999999999999999999999999999999
Q ss_pred EEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhc
Q 040758 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636 (788)
Q Consensus 557 I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~ 636 (788)
|.+||.+..++ +...+|+.++||||+|++|++|++|||.++.++.
T Consensus 372 i~~~g~~~~~~-----------------------~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~------------ 416 (569)
T PRK10789 372 IRFHDIPLTKL-----------------------QLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA------------ 416 (569)
T ss_pred EEECCEEHhhC-----------------------CHHHHHhheEEEccCCeeccccHHHHHhcCCCCC------------
Confidence 99965443222 2234577899999999999999999999975432
Q ss_pred CCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040758 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVL 714 (788)
Q Consensus 637 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLi 714 (788)
+++++.++++.+++++... .++|++|. +++|.+||||||||++|||||+++|++||
T Consensus 417 ----------------------~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ill 474 (569)
T PRK10789 417 ----------------------TQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILI 474 (569)
T ss_pred ----------------------CHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 3345566666666654333 35899997 89999999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 715 LDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 715 LDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||+||+++++.+.+.|++ .|+|+|+||||++.++.||+|++|++|+.
T Consensus 475 lDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i 527 (569)
T PRK10789 475 LDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHI 527 (569)
T ss_pred EECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEE
Confidence 9999999999999999999976 68999999999999999999999999875
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-65 Score=564.26 Aligned_cols=585 Identities=38% Similarity=0.573 Sum_probs=475.6
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++++.+++++++..+....+.+++++++++...+....+..+-+.++.++..+|.+.|+...+.+++.+.....+
T Consensus 59 ~~f~~k~~~ilkil~p~~~~~~~~~l~l~~~~l~~~~~~~~y~~~~~~~~~y~al~~kd~~~F~~~~~~~~~~~~~~s~~ 138 (659)
T KOG0060|consen 59 KVFFQKFLQILKILFPSTFSSQTALLLLALVALTLLTTADVYMIGNIPTKFYVALINKDAELFKRLLFKYVLLIPGISLL 138 (659)
T ss_pred HHHHHHHHHHHHHhccCccccHHHHHHHHHHHHHHHHHhHhheecccchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888887776555566666777777777777766676666777888899999988888777776666665566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSN 289 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~ 289 (788)
..+..+....+.++||.+++.+++.+|++...||+++.++. .+||+||+++|++.+...+..+...++...++++.+..
T Consensus 139 ~a~~ky~~~~L~Lr~R~~ltk~lh~~Y~k~~~yYkis~~d~ridNPDQrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~ 218 (659)
T KOG0060|consen 139 NALLKFTTNELYLRFRKNLTKYLHRLYFKGFTYYKLSNLDDRIDNPDQRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTF 218 (659)
T ss_pred HHHHHHHHhhhHhHHHHHHHHHHHHHHhccceEEEecccccccCChHHHHhHHHHHHHHHHHHHHHhhhccceeeehhhh
Confidence 67777888889999999999999999999999999998765 69999999999999998888888888888888888888
Q ss_pred HHHhhhhhHHHH-HHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 290 ILYGIYPPLFVV-LLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 290 il~~~~~~L~l~-~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.++...+|+..+ ++.++.+..++...+.+++.+....+++.|++++..+.+.+.|.|.|+.|+++..|.....++|+..
T Consensus 219 ~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfRy~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~L 298 (659)
T KOG0060|consen 219 RLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFRYKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNL 298 (659)
T ss_pred HHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchhhheeeeeecchhhhhhccCchHHHHHHHHHHHH
Confidence 888777666544 4556677888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----cccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG----KIEF----GVINQSVSAFNHILGDFSLIVYQFQAIS 440 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G----~it~----G~l~~~~~~~~~~~~~l~~~~~~~~~l~ 440 (788)
.+...........+.++.+.+.++..+++.++++..++.| .++- |.+......+..++..|+.+....+.++
T Consensus 299 v~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls 378 (659)
T KOG0060|consen 299 VQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLSPAELSGLISNNAFVFIYLISAFGRLVDLSRDLS 378 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcCHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 9998888887788888888888888888777777666666 2333 3333444556777888888888888899
Q ss_pred HHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeee
Q 040758 441 AFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLS 520 (788)
Q Consensus 441 ~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~is 520 (788)
.+..+..|+.++.++++...........+ ..+...........++.......+..|+|++|++.-|+++..+++|+|
T Consensus 379 ~lsGyt~Ri~el~~~l~d~~~~~~~~~~~---~~~~~E~~~~l~~~~G~~~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls 455 (659)
T KOG0060|consen 379 RLSGYTHRIGELMEVLDDLSSGSQECTME---EEELGEAEWGLSLPPGSGKAEPADNAIEFEEVSLSTPTNGDLLIENLS 455 (659)
T ss_pred HhhhHHHHHHHHHHHHHHhccCCcchhhh---hhhhhhhhhccCCCCCCcccccccceEEeeeeeecCCCCCceeeeeee
Confidence 99999999999988876544221111000 000000000011111222222234679999999999976556779999
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
|+|+.|+.+.|.||||||||+|+|.|.|+|+..+|++..-.+ ..-+.+.
T Consensus 456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~-------------------------------~~~~~lf 504 (659)
T KOG0060|consen 456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTD-------------------------------GGPKDLF 504 (659)
T ss_pred eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEeccc-------------------------------CCCCceE
Confidence 999999999999999999999999999999999999975210 0013489
Q ss_pred EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCC
Q 040758 601 FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680 (788)
Q Consensus 601 ~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 680 (788)
||||.||+..||+||++.||....+.. .+.++++++.+.|+.++++++.++.+
T Consensus 505 flPQrPYmt~GTLRdQvIYP~~~~~~~---------------------------~~~~~d~~i~r~Le~v~L~hl~~r~g 557 (659)
T KOG0060|consen 505 FLPQRPYMTLGTLRDQVIYPLKAEDMD---------------------------SKSASDEDILRILENVQLGHLLEREG 557 (659)
T ss_pred EecCCCCccccchhheeeccCcccccc---------------------------ccCCCHHHHHHHHHHhhhhhHHHHhC
Confidence 999999999999999999986543321 12367889999999999999999999
Q ss_pred Cccc--cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEE
Q 040758 681 SLDT--TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 681 g~~t--~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|+ ..+|...||+||+||+|+||.++++|++-||||+|||+|.+.|..+++.+++.|.|.|.|+||.++.++||.++
T Consensus 558 gld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~kfHd~~L 637 (659)
T KOG0060|consen 558 GLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWKFHDYVL 637 (659)
T ss_pred CCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHhhhhEEE
Confidence 9995 47999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCeEEEecCcccc
Q 040758 759 RISTVDQNSSQSNWKLEFIDQESL 782 (788)
Q Consensus 759 vl~~g~~~~~~~~~~~~~~~~~~~ 782 (788)
.|+. .|+|+++.|+.++-
T Consensus 638 ~~~g------~g~w~~~~I~~qs~ 655 (659)
T KOG0060|consen 638 RMDG------RGSWRFHQIDDQSD 655 (659)
T ss_pred EecC------CCceEEEEechhhh
Confidence 9974 79999999998763
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=555.09 Aligned_cols=513 Identities=19% Similarity=0.226 Sum_probs=361.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 160 VFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239 (788)
Q Consensus 160 ~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr 239 (788)
..+++.+..++.+...+++..+++.+..++. ...+..+++.+++..++-.+..+..+++..+ ....+.+.||
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~-----aa~~~~~~LR 76 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL---FQSLLPLLILLLIALVLRAFLAWLRERLGYR-----AAAKVRASLR 76 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 3445555555666677777888877665542 1122222222222111111222222222222 2334678899
Q ss_pred hhhHHHHhcCCC-C--CCc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 040758 240 DQTFYKIQSQSI-I--DNP----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAI 312 (788)
Q Consensus 240 ~~~f~~l~~~~~-~--~~~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i 312 (788)
..+++|+.+++. + ..| .+.+++-++.+...+..+...+....+.-+.+++.+++++|.-++++++..|++-+.
T Consensus 77 ~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlf 156 (559)
T COG4988 77 QLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLF 156 (559)
T ss_pred HHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 999999988775 2 123 267788888888877777777777777766677788889999999999888888778
Q ss_pred HHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-HH
Q 040758 313 SIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY-RY 391 (788)
Q Consensus 313 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 391 (788)
...++.+..+.++++-.....+.+...+...+++|+|+|++.+...+ ++.+..+++++...+.-+..+..+.+ ..
T Consensus 157 Milvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~----~i~~~se~fR~~TM~vLriAflSs~vLef 232 (559)
T COG4988 157 MILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEE----RIRKDSEDFRKATMSVLRIAFLSSAVLEF 232 (559)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888999999999999999999999887764 45555555544443333333332222 22
Q ss_pred HHH---HHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 392 LIQ---ILPAAVVAPMYFS-GKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 392 ~~~---~~~~~~~~~l~~~-G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
+.. .++.++++..+.+ |.+|+.....++...--+..++..+...+-.-....+..+.+..+. +.+.....
T Consensus 233 fa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l---~~~~~~~~--- 306 (559)
T COG4988 233 FAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLL---ESPVATPG--- 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh---cCCCCCCC---
Confidence 222 2222333444556 7887765433333322333333333333322222233344444332 11111000
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
..............++++|++|.||++ +++++|+||++++|+.+||||+||||||||+++|+
T Consensus 307 -----------------~~~~~~~~~~~~~ei~~~~l~~~y~~g-~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~ 368 (559)
T COG4988 307 -----------------SGEKAEVANEPPIEISLENLSFRYPDG-KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLL 368 (559)
T ss_pred -----------------CccccccccCCCceeeecceEEecCCC-CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHh
Confidence 000000111123356677999999864 48999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|+.+|++|+|.+||.+..+++ ...+|+++++|+|+|++|++||||||++++++.
T Consensus 369 G~~~~~~G~I~vng~~l~~l~-----------------------~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~--- 422 (559)
T COG4988 369 GFLAPTQGEIRVNGIDLRDLS-----------------------PEAWRKQISWVSQNPYLFAGTIRENILLARPDA--- 422 (559)
T ss_pred CcCCCCCceEEECCccccccC-----------------------HHHHHhHeeeeCCCCccccccHHHHhhccCCcC---
Confidence 999999999999877766552 346789999999999999999999999987643
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
+++++.++++++++.++.+.++|+|+. +|+|..|||||+||||+||||
T Consensus 423 -------------------------------s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 423 -------------------------------SDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARAL 471 (559)
T ss_pred -------------------------------CHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHh
Confidence 457777888888888777778899997 999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++++++|||||||+||.+||+.|.+.|.+ +++|+|+||||+..++.+|+|++|++|+.
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l 532 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRL 532 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCce
Confidence 999999999999999999999999999976 68999999999999999999999999976
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-63 Score=543.11 Aligned_cols=529 Identities=21% Similarity=0.240 Sum_probs=348.4
Q ss_pred HHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 139 KVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYAR 218 (788)
Q Consensus 139 ~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 218 (788)
+|+++|++ .+..+.+.++++.++...+...-.+.|+++..-.-.... . .+.+.+..+....+.+.+...
T Consensus 6 p~i~l~~~------~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~---~-~f~~~~p~a~VR~~aI~Rt~~- 74 (573)
T COG4987 6 PYLRLYKR------HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLA---Y-IFNVMLPSAGVRGLAILRTAA- 74 (573)
T ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHH---H-HHHHHHHHHHHHHHHHHHHHH-
Confidence 55555554 122355555665655555666677788888643222211 1 111111111111122222111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-----CCCc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 219 ETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-----IDNP--DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL 291 (788)
Q Consensus 219 ~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-----~~~~--~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il 291 (788)
....|+.+.-....+...||.++|.++...+. +.+. -+|++.|++.++..+...+...+..++......+.+
T Consensus 75 -RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L 153 (573)
T COG4987 75 -RYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGL 153 (573)
T ss_pred -HHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 11122222222233556799999999987654 2222 389999999999977666655555555555555667
Q ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHH
Q 040758 292 YGIYPPLFVVLLVYSIGG-TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFE 370 (788)
Q Consensus 292 ~~~~~~L~l~~ll~~~~~-~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~ 370 (788)
.+++|++++.+.++..+. +++...+.+.-++......+..+.++.+..+...+..+...||+++...+ .+...-.
T Consensus 154 ~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~----~l~~~e~ 229 (573)
T COG4987 154 SFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRT----ALEATEA 229 (573)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHH----HHHHHHH
Confidence 788898877766554443 33344444555555566667778899999999999999999999977664 3333333
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHH-HH-HHHHHhcCcccHHHHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHH
Q 040758 371 NLTRLLISSRNLEFFTSGYRYLIQILPA-AV-VAPMYFSGKIEFGVINQ-----SVSAFNHILGDFSLIV-YQFQAISAF 442 (788)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~l~~~G~it~G~l~~-----~~~~~~~~~~~l~~~~-~~~~~l~~~ 442 (788)
.+.+...+...+.... ..+..++.. .+ +..+|..+....|...+ .+......+.+|..+. ..++..++.
T Consensus 230 ~~~~~q~k~~~~~~~~---~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~ 306 (573)
T COG4987 230 SWLKAQRKQARFTGLS---DAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQV 306 (573)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHH
Confidence 3333333322222111 112222111 11 13344444444454321 1111112222333333 334555666
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLV 522 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~ 522 (788)
..+..|+.++ .+.+.+... + +.. .+.....++++||+|+||+...++|+|+||+
T Consensus 307 ~~Sa~Rl~~i---~~q~~e~~~-----------------~-----~~~-~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~ 360 (573)
T COG4987 307 IASARRLNDI---LDQKPEVTF-----------------P-----DEQ-TATTGQALELRNVSFTYPGQQTKALKNFNLT 360 (573)
T ss_pred HHHHHHHhhh---ccCCcccCC-----------------C-----ccc-cCCccceeeeccceeecCCCccchhhcccee
Confidence 6666666443 222211100 0 000 0111126999999999998777899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
+++||++||+|+||||||||+++|+|.|+|++|+|.++|.+...++ ...+|+.|+++
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~-----------------------~~~~~e~i~vl 417 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLD-----------------------EQALRETISVL 417 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCC-----------------------hhhHHHHHhhh
Confidence 9999999999999999999999999999999999999655443331 12356789999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g 681 (788)
+|++++|++|+|||+..++++ ++|++++++++++++++.+. .++|
T Consensus 418 ~Qr~hlF~~Tlr~NL~lA~~~----------------------------------AsDEel~~aL~qvgL~~l~~~~p~g 463 (573)
T COG4987 418 TQRVHLFSGTLRDNLRLANPD----------------------------------ASDEELWAALQQVGLEKLLESAPDG 463 (573)
T ss_pred ccchHHHHHHHHHHHhhcCCC----------------------------------CCHHHHHHHHHHcCHHHHHHhChhh
Confidence 999999999999999987654 46788888899999876544 4689
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|+|. +|.|..||||||||+||||+|++|+|++||||||.+||+.||+++.+.+.+ +|+|+|+||||+.-++.||||+
T Consensus 464 l~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIi 543 (573)
T COG4987 464 LNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRII 543 (573)
T ss_pred hhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEE
Confidence 9997 999999999999999999999999999999999999999999999999875 7999999999999999999999
Q ss_pred EEccCCCCCCC
Q 040758 759 RISTVDQNSSQ 769 (788)
Q Consensus 759 vl~~g~~~~~~ 769 (788)
||++|+...+.
T Consensus 544 vl~~Gkiie~G 554 (573)
T COG4987 544 VLDNGKIIEEG 554 (573)
T ss_pred EEECCeeeecC
Confidence 99999875544
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=623.30 Aligned_cols=449 Identities=16% Similarity=0.187 Sum_probs=330.1
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|..+|.++.+.+. |+. + .+|+++|++.+...+...+..++..++.+++.+++++..+|+++++++...
T Consensus 1036 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~ 1115 (1522)
T TIGR00957 1036 ASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLG 1115 (1522)
T ss_pred HHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788889999987665 543 3 379999999999877666667777777777776667767776665555544
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNL-EFF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 385 (788)
+++.++..++.+..+...+......+.+.+.+.|+++++++||+|+.|+.+.+ ++.+..+...+........ .+.
T Consensus 1116 ~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~----~~~~~~~~~~~~~~~~~~~~~~~ 1191 (1522)
T TIGR00957 1116 LLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIH----QSDLKVDENQKAYYPSIVANRWL 1191 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555556667788888999999999999999976654 3333333322221111111 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCC
Q 040758 386 TSGYRYLIQILPAAVVAPMYF-SGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNL 464 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~-~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~ 464 (788)
......+..++.++++++.+. .|.++.|.+..++.+...+..++.++...+..+.....+.+|+.++.+...+.. .
T Consensus 1192 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~---~ 1268 (1522)
T TIGR00957 1192 AVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP---W 1268 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---c
Confidence 111122222222223333333 578999998888887777777777777777777777777888877653321110 0
Q ss_pred CchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 465 SEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
. . +........+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||||||||++
T Consensus 1269 ~--~----------------~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~ 1330 (1522)
T TIGR00957 1269 Q--I----------------QETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTL 1330 (1522)
T ss_pred c--c----------------cCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 0 0 000000001235789999999999865567999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc
Q 040758 545 AMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE 624 (788)
Q Consensus 545 lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~ 624 (788)
+|.|+|+|++|+|.+||.|..++ +...+|++|++|||||+||+|||||||.... .
T Consensus 1331 lL~rl~~~~~G~I~IdG~dI~~i-----------------------~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~- 1385 (1522)
T TIGR00957 1331 GLFRINESAEGEIIIDGLNIAKI-----------------------GLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-Q- 1385 (1522)
T ss_pred HHhcCccCCCCeEEECCEEcccc-----------------------CHHHHHhcCeEECCCCcccCccHHHHcCccc-C-
Confidence 99999999999999976655444 2345688899999999999999999997311 1
Q ss_pred ccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHH
Q 040758 625 EVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAF 702 (788)
Q Consensus 625 ~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaI 702 (788)
.++++++++++.+++++.... ++||||. +|.|.+||||||||+||
T Consensus 1386 ---------------------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~L 1432 (1522)
T TIGR00957 1386 ---------------------------------YSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCL 1432 (1522)
T ss_pred ---------------------------------CCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHH
Confidence 345677777777777665544 4899997 89999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 703 ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 703 ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||||+||++|+.
T Consensus 1433 ARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1433 ARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEV 1497 (1522)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999986 69999999999999999999999999975
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=565.26 Aligned_cols=525 Identities=16% Similarity=0.159 Sum_probs=361.7
Q ss_pred HHHHHHHHhc-ccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAA-PYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF 211 (788)
Q Consensus 133 ~~~~l~~~~~-p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~ 211 (788)
.+++++++++ |+|+ .+++.++++++.++..+..|++++.++|.....+... +.++++++++..
T Consensus 4 ~~~~l~~~~~~~~~~---------~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~----~~~~~~~~~~~~--- 67 (555)
T TIGR01194 4 AIGEILALLRSPFPA---------ITAFSIALGLAGGLAIIALLASINNAIHEENFLGQGS----LFSFGGLCLLAL--- 67 (555)
T ss_pred hHHHHHHHHhhccHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchH----HHHHHHHHHHHH---
Confidence 4678888888 8876 3666666777777788888998888887432111111 111211111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 212 VLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDL 284 (788)
Q Consensus 212 ~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~ 284 (788)
+..+...++. . .....+.+.+|..+|.|+.+.+. +++ . .+|+++|++.+...+.. ...++..++.+
T Consensus 68 -~~~~~~~~~~----~-~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~ 140 (555)
T TIGR01194 68 -LFRIGADIFP----A-YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIF 140 (555)
T ss_pred -HHHHHHHHHH----H-HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHH
Confidence 1222222111 1 12333567899999999998776 332 1 37999999999986643 45566666666
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHH
Q 040758 285 ISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQR 364 (788)
Q Consensus 285 i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~ 364 (788)
++.+++|++++|++++++++..++.+++..++.++..+.....++..+++...+.|..+++++||+|+.++... ..++
T Consensus 141 ~~~~~~l~~~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~--~~~~ 218 (555)
T TIGR01194 141 FFCIAYLAYLSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSF--AHGA 218 (555)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHH--HHHH
Confidence 66777888999999998887777777777777777766666677778888888899999999999999854211 1245
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHH---hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 365 FRSAFENLTRLLISSRNLEFFTSGYRYLIQIL-PAAVVAPMY---FSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAIS 440 (788)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~ 440 (788)
+.+..+++.+........... ...+..++ ..++++.++ +.|.+|+|.+.+++.+...+..++..+...+..+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~ 295 (555)
T TIGR01194 219 IQESANNIADLHIIEILIFIA---AENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILA 295 (555)
T ss_pred hhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433222111111 11111111 111122222 23689999998888877777888877777777777
Q ss_pred HHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC---Ccccee
Q 040758 441 AFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS---KATLVR 517 (788)
Q Consensus 441 ~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~---~~~vL~ 517 (788)
......+|+.++.+..+.+.... .. +. .......++....+.|+++||+|+|++. ++++|+
T Consensus 296 ~a~~s~~ri~~ll~~~~~~~~~~-~~--------------~~-~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~ 359 (555)
T TIGR01194 296 QAQIACQRLADFGERFNEPEPEL-EL--------------SD-ADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALG 359 (555)
T ss_pred HHHHHHHHHHHHHhhhccccccc-cc--------------cc-cccccccccCCCCceEEEEEEEEEeCCCCCCcCceec
Confidence 77788888877643222111000 00 00 0000000011123579999999999752 236999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|+
T Consensus 360 ~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~-----------------------~~~~~~~ 416 (555)
T TIGR01194 360 PIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSAD-----------------------SRDDYRD 416 (555)
T ss_pred cceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999965543332 1224567
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
.+++|+||+++|++|+++|+. +. .+++++.++++.++++....
T Consensus 417 ~i~~v~q~~~lf~~ti~~n~~---~~----------------------------------~~~~~~~~~~~~~~l~~~~~ 459 (555)
T TIGR01194 417 LFSAIFADFHLFDDLIGPDEG---EH----------------------------------ASLDNAQQYLQRLEIADKVK 459 (555)
T ss_pred hCcEEccChhhhhhhhhcccc---cc----------------------------------hhHHHHHHHHHHcCCchhhc
Confidence 799999999999999999951 11 13456677778888776555
Q ss_pred c-CCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH-H---hcCCEEEEEecCcchhh
Q 040758 678 R-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-E---AAGITYISVGHRRTLYD 752 (788)
Q Consensus 678 ~-~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-~---~~g~TvI~IaHr~~~~~ 752 (788)
. ++||+|. .+|||||||||+||||++++|++||||||||+||+++|+.+++.+ + ..|+|+|+||||+++.+
T Consensus 460 ~lp~g~~t~----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~ 535 (555)
T TIGR01194 460 IEDGGFSTT----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE 535 (555)
T ss_pred ccccccCCc----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH
Confidence 4 5788884 679999999999999999999999999999999999999998765 2 35899999999999999
Q ss_pred cCCEEEEEccCCC
Q 040758 753 FHKRVLRISTVDQ 765 (788)
Q Consensus 753 ~~D~Ilvl~~g~~ 765 (788)
.||+|++|++|+.
T Consensus 536 ~~d~i~~l~~G~i 548 (555)
T TIGR01194 536 LADQIIKLAAGCI 548 (555)
T ss_pred hCCEEEEEECCEE
Confidence 9999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-61 Score=608.84 Aligned_cols=545 Identities=13% Similarity=0.148 Sum_probs=358.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
.+++.++++++..++..++|++++.++|.+...+. .....++++++.++..++.++..++. .+. ...+.
T Consensus 61 ~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~--------~~~-~~~~~ 129 (1466)
T PTZ00265 61 LLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VNDIIFSLVLIGIFQFILSFISSFCM--------DVV-TTKIL 129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHH-HHHHH
Confidence 45555666666666777999999999997643221 11111111111111111112221111 222 22356
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+.+|...|.++.+++. +++. .+|+++|++.++..+...+..++..++.+++.+++++.++|+|++++++.+|+
T Consensus 130 ~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lalv~l~~~pl 209 (1466)
T PTZ00265 130 KTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVFPL 209 (1466)
T ss_pred HHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 7788889999877664 4432 26777788888877666667777778888888888999999999999988888
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-HH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFF-TS 387 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 387 (788)
.+++..++.+++.......++..++..+.+.|.+.++++||+|+.|+.+.+ +|.+..+.+.+...+....... ..
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~----~f~~~~~~~~~~~~k~~~~~~~~~~ 285 (1466)
T PTZ00265 210 IYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILK----KFNLSEKLYSKYILKANFMESLHIG 285 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777766777777888888999999999999999998885 4444444333332222222111 11
Q ss_pred ---HHHHHHHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 040758 388 ---GYRYLIQILPAAVVAPMYFSG--------KIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVL 456 (788)
Q Consensus 388 ---~~~~~~~~~~~~~~~~l~~~G--------~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~ 456 (788)
.+..+..++.++++++++..| .+++|.+.+.+.........+..+...+..+.......+|+.++ +
T Consensus 286 ~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~i---i 362 (1466)
T PTZ00265 286 MINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEI---I 362 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 111222233344455666664 46777665433222111111222222333444445556666543 2
Q ss_pred ccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCC
Q 040758 457 DSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPS 535 (788)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~s 535 (788)
+.+...... . .....+. .+.|+|+||+|+||+++ .++|+|+||+|++||++||||||
T Consensus 363 ~~~~~~~~~--------------------~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~S 420 (1466)
T PTZ00265 363 NRKPLVENN--------------------D-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGES 420 (1466)
T ss_pred cCCCCCCCC--------------------C-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCC
Confidence 322110000 0 0000111 13699999999998532 46999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCCceEEEe-eccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHH
Q 040758 536 GSGKTSLLRAMAGLWSDGRGKITFY-VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614 (788)
Q Consensus 536 GsGKSTLl~lL~gl~~p~~G~I~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~ 614 (788)
|||||||+++|+|+|+|++|+|+++ |.+..++ +...+|++||||+|+|.||++||+
T Consensus 421 GsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~-----------------------~~~~lr~~Ig~V~Q~~~LF~~TI~ 477 (1466)
T PTZ00265 421 GCGKSTILKLIERLYDPTEGDIIINDSHNLKDI-----------------------NLKWWRSKIGVVSQDPLLFSNSIK 477 (1466)
T ss_pred CCCHHHHHHHHHHhccCCCCeEEEeCCcchhhC-----------------------CHHHHHHhccEecccccchhccHH
Confidence 9999999999999999999999994 2322211 223457789999999999999999
Q ss_pred HHhcCCCCcc-cc--------------chh---hHHHHh--cCCccchhhhhhhhhhc---cCCCCCChHHHHHHHHhcc
Q 040758 615 QQLIYPTWTE-EV--------------KPA---SDAAKS--AGLVPFLTSAQKLENVG---RKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 615 eNi~~~~~~~-~~--------------~~~---~~aa~~--~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~ 671 (788)
|||.|+.... .. .+. .+.++. .....-+.......... ......+++++.++++.++
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 9999974210 00 000 000000 00000000000000000 0112356788999999999
Q ss_pred ccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 672 LGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 672 l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
++.++.. ++||+|. ++.|.+|||||||||+|||||+++|+|||||||||+||+++|+.+++.|++ .|+|+|+||
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIs 637 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIA 637 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 9876654 5899997 899999999999999999999999999999999999999999999999875 389999999
Q ss_pred cCcchhhcCCEEEEEccC
Q 040758 746 HRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 746 Hr~~~~~~~D~Ilvl~~g 763 (788)
||+++++.||+|++|++|
T Consensus 638 Hrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 638 HRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred CCHHHHHhCCEEEEEeCC
Confidence 999999999999999997
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=610.11 Aligned_cols=473 Identities=18% Similarity=0.208 Sum_probs=326.0
Q ss_pred HHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.+.+|..+|.++.+.++ |+. + .+|+++|++.+...+...+..++..++.+++.+++++..+|+++++++...+
T Consensus 1030 ~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i~~~~ 1109 (1560)
T PTZ00243 1030 SRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALVPCGY 1109 (1560)
T ss_pred HHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999987665 543 2 3899999999998776666677777777777766777777654433332222
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
++..+..++.+..+...+......+.+.+.+.|+++++++||+|+.|+.+.+++.++.+...+.................
T Consensus 1110 ~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~~~~~ 1189 (1560)
T PTZ00243 1110 LYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLGVRVE 1189 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555544444556677788889999999999999999888765555555444433322222222222222
Q ss_pred HHHHHHHHHHHHHHHHH--HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 388 GYRYLIQILPAAVVAPM--YFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l--~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.+..+..++..++++.. ...+.+++|.+..++.+...+...+.+++..+..+.......+|+.++.+....++.....
T Consensus 1190 ~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~~~~~ 1269 (1560)
T PTZ00243 1190 FLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDMPELD 1269 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc
Confidence 22222221111222222 2234578887766666666777777777777766777777788887765321111000000
Q ss_pred chhhhhhhh---ccccCC---CCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcH
Q 040758 466 EPLEKICLT---YCSVKS---FPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGK 539 (788)
Q Consensus 466 ~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGK 539 (788)
...+..... ..+... ..........+.....|.|+|+||+|+|+++.+++|+|+||+|++||++||||+|||||
T Consensus 1270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGK 1349 (1560)
T PTZ00243 1270 EEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGK 1349 (1560)
T ss_pred ccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCH
Confidence 000000000 000000 00000000001112346899999999997644569999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcC
Q 040758 540 TSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY 619 (788)
Q Consensus 540 STLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~ 619 (788)
|||+++|+|+|+|++|+|++||.|..++ +.+.+|+.|++|||||+||+|||||||..
T Consensus 1350 STLl~lLlrl~~p~~G~I~IDG~di~~i-----------------------~l~~LR~~I~iVpQdp~LF~gTIreNIdp 1406 (1560)
T PTZ00243 1350 STLLLTFMRMVEVCGGEIRVNGREIGAY-----------------------GLRELRRQFSMIPQDPVLFDGTVRQNVDP 1406 (1560)
T ss_pred HHHHHHHhCCCCCCCcEEEECCEEcccC-----------------------CHHHHHhcceEECCCCccccccHHHHhCc
Confidence 9999999999999999999976654443 23456888999999999999999999965
Q ss_pred CCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHH
Q 040758 620 PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQ 697 (788)
Q Consensus 620 ~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQr 697 (788)
.. . .++++++++++.+++++++.. ++||||. +|.|.+||||||
T Consensus 1407 ~~-~----------------------------------~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1407 FL-E----------------------------------ASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred cc-C----------------------------------CCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 31 1 345677777777777655444 5899997 899999999999
Q ss_pred HHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 698 QRLAFARLLLSK-PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 698 QRiaIARALl~~-p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+|||||+++ |+|||||||||+||+++|+.|++.|++ .++|+|+||||++++..||+|+||++|+.
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~V 1522 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAV 1522 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEE
Confidence 999999999996 999999999999999999999999986 58999999999999999999999999965
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-61 Score=610.98 Aligned_cols=446 Identities=18% Similarity=0.213 Sum_probs=297.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|..+|.++.+.++ |+. | .+|+++|++.+.......+..++..++.+++.+++++.++|+..++++...
T Consensus 984 ~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~~~~pl~ 1063 (1622)
T PLN03130 984 AAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLWAIMPLL 1063 (1622)
T ss_pred HHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688889999987665 543 3 389999999998866656666777777766666666666653332222221
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE-FF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 385 (788)
+++.++..++.+..++..+......+.+.+.+.|+++++++||+|+.++... +.+.+..+...+......... +.
T Consensus 1064 ~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~----~~~~~~~~~~~~~~~~~~~~~~wl 1139 (1622)
T PLN03130 1064 VLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMA----EINGRSMDNNIRFTLVNMSSNRWL 1139 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222333333333333344455667777899999999999999876443 333333322221111111001 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-c--------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhc
Q 040758 386 TSGYRYLIQILPAAVVAPMYFSG-K--------IEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVL 456 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~~G-~--------it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~ 456 (788)
......+..++.++.+.+.+..+ . .++|.+..+ ...+...+.++...+..+.......+|+.++.+..
T Consensus 1140 ~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~---~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1140 AIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSY---ALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11111111111112222223322 1 334443322 22233333344333344445556677776654322
Q ss_pred ccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCC
Q 040758 457 DSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSG 536 (788)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sG 536 (788)
.+.... . +.....+..+..|.|+|+||+|+|+++.+++|+|+||+|+|||++||||+||
T Consensus 1217 ~E~~~~-----~----------------~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSG 1275 (1622)
T PLN03130 1217 SEAPLV-----I----------------ENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTG 1275 (1622)
T ss_pred Cccccc-----c----------------cCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCC
Confidence 111000 0 0000001112356899999999997544579999999999999999999999
Q ss_pred CcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHH
Q 040758 537 SGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616 (788)
Q Consensus 537 sGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eN 616 (788)
||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|++|||||+||+||||||
T Consensus 1276 SGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i-----------------------~l~~LR~~IsiVpQdp~LF~GTIreN 1332 (1622)
T PLN03130 1276 AGKSSMLNALFRIVELERGRILIDGCDISKF-----------------------GLMDLRKVLGIIPQAPVLFSGTVRFN 1332 (1622)
T ss_pred CCHHHHHHHHhCcCCCCCceEEECCEecccC-----------------------CHHHHHhccEEECCCCccccccHHHH
Confidence 9999999999999999999999976655444 23456888999999999999999999
Q ss_pred hcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCCh
Q 040758 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSL 694 (788)
Q Consensus 617 i~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSG 694 (788)
|.++. . .++++++++++.+++++++.. ++||||. +|+|.+|||
T Consensus 1333 Ld~~~-~----------------------------------~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSg 1377 (1622)
T PLN03130 1333 LDPFN-E----------------------------------HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSV 1377 (1622)
T ss_pred hCcCC-C----------------------------------CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCH
Confidence 98763 1 244566666666666554443 4799997 899999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 695 GQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||||||||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||||+||++|+.
T Consensus 1378 GQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1378 GQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRV 1450 (1622)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999986 68999999999999999999999999975
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-61 Score=523.69 Aligned_cols=512 Identities=21% Similarity=0.225 Sum_probs=362.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALA-DKDQEQFAKQLLYYLGAFAGG-IPFFVLRDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~-~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~l~~~~~ 234 (788)
++.+.+++++..++.+..|+++=.++|.+. +.+...+ .++.+++++ .++..+..++...+..|. ...+
T Consensus 25 ~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TL-----v~Ltvlal~ly~~~glLd~iR~~~l~Ri-----g~~l 94 (580)
T COG4618 25 FIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTL-----VMLTVLALGLYAFQGLLDAIRSRVLVRI-----GERL 94 (580)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 556677788888888999999999999754 4443322 111111111 111112222222222221 1224
Q ss_pred HHHhhhhhHHHHhcCCCCCC---chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSIIDN---PDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~~~~---~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
++.+...+|.-.-+.+...+ ...-..+|.++++++.++.....+...--+-.++.++|.++||+.++.++..++.+.
T Consensus 95 D~~L~~~v~~a~~~~~l~~~~~g~~~Q~LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~ 174 (580)
T COG4618 95 DRQLNGPVFAASFSAPLLRRGSGDGLQPLRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVV 174 (580)
T ss_pred HHHhccHHHHHHHhhHHhhcCCCccccchhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666665533322111 122456799999998765433322221111224456677899998888776665555
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLIS----SRNLEFFTS 387 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 387 (788)
++++-...-++..++..+....-+........|+|+|++.|...... ++|.+.+..+...... ...+....-
T Consensus 175 la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~----~rW~~~~~~~L~~~~~asd~~~~~~~~Sr 250 (580)
T COG4618 175 LALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLA----KRWGRFNAAYLSAQERASDRNGAFGALSR 250 (580)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44322222122122222222333333456788999999999987766 4666655554433322 223334444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCch
Q 040758 388 GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEP 467 (788)
Q Consensus 388 ~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~ 467 (788)
.+..+.+...+++++|+++.|++|-|.+.+......+.+.++-..+..+..+........|+.++........
T Consensus 251 ~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~------- 323 (580)
T COG4618 251 ALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA------- 323 (580)
T ss_pred HHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc-------
Confidence 5567777778888999999999999999887777888888888888888888888888999987654322111
Q ss_pred hhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 468 LEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
...+.+.+++.+.+|++++.-|+.++++|+|+||++++||.+|||||||||||||.|+|.
T Consensus 324 --------------------~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lv 383 (580)
T COG4618 324 --------------------ERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLV 383 (580)
T ss_pred --------------------CCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHH
Confidence 112233467889999999988887889999999999999999999999999999999999
Q ss_pred cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccc
Q 040758 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVK 627 (788)
Q Consensus 548 gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~ 627 (788)
|.|+|.+|.|++||.| ++ . .+.+.+-++|||+|||..||+|||+|||+--..+.+.+
T Consensus 384 G~w~p~~G~VRLDga~---l~------------q--------Wd~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~ 440 (580)
T COG4618 384 GIWPPTSGSVRLDGAD---LR------------Q--------WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPE 440 (580)
T ss_pred cccccCCCcEEecchh---hh------------c--------CCHHHhccccCcCcccceecCCcHHHHHHhccccCCHH
Confidence 9999999999996443 31 1 23345678899999999999999999997544455666
Q ss_pred hhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 628 PASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 628 ~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
.+++|||.++.|+.+.. .++||||. ++.|..|||||||||++||||
T Consensus 441 kIieAA~lAgvHelIl~---------------------------------lP~GYdT~iG~~G~~LSgGQRQRIaLARAl 487 (580)
T COG4618 441 KVIEAARLAGVHELILR---------------------------------LPQGYDTRIGEGGATLSGGQRQRIALARAL 487 (580)
T ss_pred HHHHHHHHcChHHHHHh---------------------------------CcCCccCccCCCCCCCCchHHHHHHHHHHH
Confidence 78888888877655422 34899997 999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.||.+++||||-|+||.+.|+.+.+++. +.|.|+|+||||++.+..+|+|++|++|..
T Consensus 488 YG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 488 YGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRI 549 (580)
T ss_pred cCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChH
Confidence 99999999999999999999999999875 479999999999999999999999999964
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-60 Score=602.90 Aligned_cols=449 Identities=19% Similarity=0.234 Sum_probs=299.1
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.+|.++|.++.+.++ |+. + .+|+++|++.+...+...+..++..++.+++.+++++.++++..++++...
T Consensus 981 ~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 1060 (1495)
T PLN03232 981 AAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLWAIMPLL 1060 (1495)
T ss_pred HHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788889999987765 443 3 389999999998876665566666666665555555555543322222111
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE-FF 385 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 385 (788)
+++.++..++.+..+...+......+.+.+.+.|+++++++||+|+.++...+ ++.+..+...+......... +.
T Consensus 1061 ~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~wl 1136 (1495)
T PLN03232 1061 ILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAK----INGKSMDNNIRFTLANTSSNRWL 1136 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112222222333334444455566777778999999999999999865443 33333332222111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCcc----cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccc
Q 040758 386 TSGYRYLIQILPAAVVAPMYF-SGKI----EFG-VINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSS 459 (788)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~l~~-~G~i----t~G-~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~ 459 (788)
......+..++.++.+.+.+. .|.+ +++ .+...+.+...+...+.++...+..+.......+|+.++.+...+.
T Consensus 1137 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~ 1216 (1495)
T PLN03232 1137 TIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEA 1216 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 111111111111111222222 2322 111 2222333334444455555555555555566677877664322111
Q ss_pred cCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcH
Q 040758 460 SSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGK 539 (788)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGK 539 (788)
.. .. ......+..+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||||||||
T Consensus 1217 ~~---~~------------------~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGK 1275 (1495)
T PLN03232 1217 TA---II------------------ENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275 (1495)
T ss_pred cc---cc------------------cCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCH
Confidence 00 00 0000000112346799999999996545679999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcC
Q 040758 540 TSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY 619 (788)
Q Consensus 540 STLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~ 619 (788)
|||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|++|||||+||+|||||||.+
T Consensus 1276 STL~~lL~rl~~p~~G~I~IdG~di~~i-----------------------~~~~lR~~i~iVpQdp~LF~gTIr~NL~~ 1332 (1495)
T PLN03232 1276 SSMLNALFRIVELEKGRIMIDDCDVAKF-----------------------GLTDLRRVLSIIPQSPVLFSGTVRFNIDP 1332 (1495)
T ss_pred HHHHHHHhCCCcCCCceEEECCEEhhhC-----------------------CHHHHHhhcEEECCCCeeeCccHHHHcCC
Confidence 9999999999999999999976654444 23356888999999999999999999987
Q ss_pred CCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHH
Q 040758 620 PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQ 697 (788)
Q Consensus 620 ~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQr 697 (788)
+. . .++++++++++.+++.++... ++||||. +|.|.+||||||
T Consensus 1333 ~~-~----------------------------------~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232 1333 FS-E----------------------------------HNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred CC-C----------------------------------CCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence 53 2 245666777777777654444 4899997 899999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 698 QRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 698 QRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+|||||+++|+|||||||||+||+++|+.|++.|++ +++|+|+||||++++..||+|+||++|+.
T Consensus 1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447 (1495)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999986 58999999999999999999999999975
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-61 Score=511.33 Aligned_cols=408 Identities=19% Similarity=0.239 Sum_probs=302.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhc
Q 040758 273 FSLTLFNAAVDLISFSNILYG-IYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFY 351 (788)
Q Consensus 273 ~~~~ii~~~i~~i~~~~il~~-~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f 351 (788)
.+..++..++.+...+++++. ++||..++.++.+.++.+++.....+-....+...++.++....-.+++-|.++||.|
T Consensus 59 ~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F 138 (497)
T COG5265 59 ILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYF 138 (497)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeec
Confidence 445566666666666555544 5688888777777777777665555544444444555556666667999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Q 040758 352 AGEDNEMQLLLQRFRSAFENLTRLLISS----RNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILG 427 (788)
Q Consensus 352 ~~e~~e~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~ 427 (788)
+.|++|.. +|....+.+.+...+. ..+++.+..+........+...+..+..|.+|+|+++..-.+..++..
T Consensus 139 ~ne~~e~~----r~~~~~~~Y~~a~~k~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~ 214 (497)
T COG5265 139 GNEEYEAV----RYDHALETYEKAAIKVHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSI 214 (497)
T ss_pred Cchhhhhh----hcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhh
Confidence 99999985 6666666665554433 222222222222212222233455677899999998766556666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCc-CCCCcEEEeeeEE
Q 040758 428 DFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPE-KSQKLLDIEDLTL 506 (788)
Q Consensus 428 ~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~I~~~nvsf 506 (788)
++..+...++.+.+...-++++. ++++.+.... + .++.++.. ...+.+.|+||+|
T Consensus 215 Plnflg~~Yrei~q~ltdme~mf---dLl~~~~~v~--d-------------------~pda~~L~~~~~g~v~F~~V~F 270 (497)
T COG5265 215 PLNFLGFSYREIRQALTDMEKMF---DLLDVEAEVS--D-------------------APDAPPLWPVRLGAVAFINVSF 270 (497)
T ss_pred hhhhhHHHHHHHHHhhhhHHHHH---Hhhccchhhc--c-------------------CCCCccccccccceEEEEEEEe
Confidence 66666666655555444344333 3333221110 0 00011111 2356799999999
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccccccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 586 (788)
.|.. .+++|+++||++++|+++|+|||||+||||++++|.||||+++|.|.+||.|..++
T Consensus 271 ~y~~-~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~v------------------- 330 (497)
T COG5265 271 AYDP-RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDV------------------- 330 (497)
T ss_pred eccc-cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHh-------------------
Confidence 9974 78999999999999999999999999999999999999999999999965544333
Q ss_pred chhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHH
Q 040758 587 ELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666 (788)
Q Consensus 587 ~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 666 (788)
....+|+.||+||||..||++|+..||.||.+..+.+++.+||+.+..++|+..
T Consensus 331 ----tq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~---------------------- 384 (497)
T COG5265 331 ----TQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQS---------------------- 384 (497)
T ss_pred ----HHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHh----------------------
Confidence 223567889999999999999999999999998888888888887777666533
Q ss_pred HHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEE
Q 040758 667 LEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYIS 743 (788)
Q Consensus 667 l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~ 743 (788)
.|+||++. +|+|-.|||||||||||||+++++|+||+|||||||||..+|++|+.+|++ .|+|.++
T Consensus 385 -----------lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlv 453 (497)
T COG5265 385 -----------LPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLV 453 (497)
T ss_pred -----------CchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEE
Confidence 23799996 999999999999999999999999999999999999999999999999986 7999999
Q ss_pred EecCcchhhcCCEEEEEccCCC
Q 040758 744 VGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+||++++-.||.|+||++|..
T Consensus 454 iahrlsti~~adeiivl~~g~i 475 (497)
T COG5265 454 IAHRLSTIIDADEIIVLDNGRI 475 (497)
T ss_pred EeehhhhccCCceEEEeeCCEE
Confidence 9999999999999999999975
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-58 Score=535.99 Aligned_cols=510 Identities=15% Similarity=0.169 Sum_probs=333.9
Q ss_pred HHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 136 RFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVG-FNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLR 214 (788)
Q Consensus 136 ~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~-~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 214 (788)
.++++++++++ .+++.++++++..++.+. .|++.+.++|.+.. +...+ ..+++++++..++.++.
T Consensus 3 ~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 68 (547)
T PRK10522 3 LLRLVWRQYRW---------PFISVMALSLASAALGIGLIAFINQRLIETADT-SLLVL----PEFLGLLLLLMAVTLGS 68 (547)
T ss_pred hHHHHHHhhhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHH----HHHHHHHHHHHHHHHHH
Confidence 35566666665 356666667777777776 47788889986532 21111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 215 DYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISF 287 (788)
Q Consensus 215 ~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~ 287 (788)
.+. ..+. ...+.+.+|..+|.++.+.+. +++. .+|+++|++.+...+. .+..++..++.++++
T Consensus 69 ~~~--------~~~~-~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~ 138 (547)
T PRK10522 69 QLA--------LTTL-GHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGS 138 (547)
T ss_pred HHH--------HHHH-HHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 111 1222 223556789999999988775 3322 3799999999987543 345567777777777
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 288 SNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 288 ~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
+++|++++|++++++++..++.+++..++.++..+...+.++..+++...+.|..+++++++ ++.+..+ +.+.++|++
T Consensus 139 ~~~l~~~~~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~-~~~~~~~~~ 216 (547)
T PRK10522 139 AAYLAWLSPKMLLVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAE-YVFENEYEP 216 (547)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHH-HHHHHHHhH
Confidence 78888999999998888888887888888888887777777888888888899999999995 5444321 223356665
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHHHHHHHhcCcc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNLEFFTSGYRYLIQILP-AAVVAPMYFSGKI---EFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~G~i---t~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+........ ..+..++. .++++++++.|.. +.+.+..+..+...+..++..+...+..+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 293 (547)
T PRK10522 217 DAQEYRHHIIRADTFHLSA---VNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQ 293 (547)
T ss_pred HHHHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443322222111111 11111111 1222233333322 222222222222223344444444444555566
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
...+|+.++.+ .+...+.. ..... ...+.|+++||+|+||+ ++++|+|+||+|
T Consensus 294 ~a~~ri~~l~~---~~~~~~~~----------------------~~~~~-~~~~~i~~~~v~f~y~~-~~~~l~~i~~~i 346 (547)
T PRK10522 294 VAFNKLNKLAL---APYKAEFP----------------------RPQAF-PDWQTLELRNVTFAYQD-NGFSVGPINLTI 346 (547)
T ss_pred HHHHHHHHHhc---cccccccc----------------------ccccc-CcCceEEEEEEEEEeCC-CCeEEecceEEE
Confidence 66777765422 11100000 00000 11246999999999984 457999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++ +...+|++|+||+
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 403 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAE-----------------------QPEDYRKLFSAVF 403 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCC-----------------------CHHHHhhheEEEe
Confidence 99999999999999999999999999999999999965543322 1224567899999
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
||+++|++|+++| +. . .+++++.+.++.++++......+|.
T Consensus 404 q~~~lf~~ti~~n---~~-~----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~~- 444 (547)
T PRK10522 404 TDFHLFDQLLGPE---GK-P----------------------------------ANPALVEKWLERLKMAHKLELEDGR- 444 (547)
T ss_pred cChhHHHHhhccc---cC-c----------------------------------hHHHHHHHHHHHcCCchhhhccccC-
Confidence 9999999999998 11 1 1234556667776665443322221
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchhhcCCEEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
..|.+||||||||++|||||+++|++||||||||+||+++|+.+.+.+.+ .++|+|+||||+++.+.||+|++
T Consensus 445 ---~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~ 521 (547)
T PRK10522 445 ---ISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLE 521 (547)
T ss_pred ---CCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEE
Confidence 13678999999999999999999999999999999999999999888752 48999999999999999999999
Q ss_pred EccCCCC
Q 040758 760 ISTVDQN 766 (788)
Q Consensus 760 l~~g~~~ 766 (788)
|++|+..
T Consensus 522 l~~G~i~ 528 (547)
T PRK10522 522 MRNGQLS 528 (547)
T ss_pred EECCEEE
Confidence 9999754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=576.57 Aligned_cols=463 Identities=17% Similarity=0.200 Sum_probs=318.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
..+.++..+|.++.+.++ |+. | .+|+++|+..+...+...+..++..++.+++.++++++++|+++++++..+
T Consensus 956 ~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~l~~~~l~ 1035 (1490)
T TIGR01271 956 VSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVA 1035 (1490)
T ss_pred HHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887765 443 3 379999999998877766677777777777777777888887765544443
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
++++++..++.+..+...+......+.+...+.|++.++.+||+|+.++.+.+++.+..+.............+.+....
T Consensus 1036 ~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 1115 (1490)
T TIGR01271 1036 VIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRI 1115 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454444444444455566777888999999999999999988776554444433222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCc
Q 040758 387 SGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSE 466 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~ 466 (788)
. .+..++.++++...+....++.|.+...+.++..+...+.+++..+..+.......+|+.++.+...+.... ...
T Consensus 1116 ~---~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~~-~~~ 1191 (1490)
T TIGR01271 1116 D---IIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRP-SGG 1191 (1490)
T ss_pred H---HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc-ccc
Confidence 1 111111111111111122334444443444445555566666665555666666778887765432211100 000
Q ss_pred hhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 040758 467 PLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546 (788)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL 546 (788)
. . .+.... .........++..+..|.|+|+||+|+|+++.+++|+|+||+|++||++||||+||||||||+++|
T Consensus 1192 ~--~---~~~~~~-~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL 1265 (1490)
T TIGR01271 1192 G--G---KYQLST-VLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL 1265 (1490)
T ss_pred c--c---cccccc-ccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 0 000000 000000000001123578999999999986567899999999999999999999999999999999
Q ss_pred hcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcccc
Q 040758 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEV 626 (788)
Q Consensus 547 ~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~ 626 (788)
+|+|+ ++|+|++||.|..++ +.+.+|++|+||||||+||+||||+||....
T Consensus 1266 ~rl~~-~~G~I~IdG~di~~i-----------------------~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~----- 1316 (1490)
T TIGR01271 1266 LRLLS-TEGEIQIDGVSWNSV-----------------------TLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE----- 1316 (1490)
T ss_pred hhhcC-CCcEEEECCEEcccC-----------------------CHHHHHhceEEEeCCCccCccCHHHHhCccc-----
Confidence 99998 799999976654443 2335688899999999999999999995421
Q ss_pred chhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHH
Q 040758 627 KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFAR 704 (788)
Q Consensus 627 ~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIAR 704 (788)
..++++++++|+.+++...... ++|+|+. +|.|.+|||||||||+|||
T Consensus 1317 ------------------------------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LAR 1366 (1490)
T TIGR01271 1317 ------------------------------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLAR 1366 (1490)
T ss_pred ------------------------------CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHH
Confidence 1356788888888888765554 4899997 8999999999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 705 ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||+++|+|||||||||+||+++++.|++.|++ .++|+|+||||++++..||+|++|++|+.
T Consensus 1367 ALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1367 SILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSV 1429 (1490)
T ss_pred HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999986 68999999999999999999999999975
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-56 Score=564.10 Aligned_cols=496 Identities=16% Similarity=0.139 Sum_probs=334.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWR-SWMTKYYME 235 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~l~~~~~~ 235 (788)
++..+++.++...+.+..|++++.++|.+..++.. +.... ++++++++.++..+ .... .+. .......+.
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~--~~~~~-~~~~l~~~~~~~~~---~~~~---~~~~~~~~~~~ir 373 (1495)
T PLN03232 303 FWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA--WVGYV-YAFLIFFGVTFGVL---CESQ---YFQNVGRVGFRLR 373 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--chHHH-HHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHH
Confidence 44455556677778889999999999987654421 11111 11111111111111 1100 000 011222345
Q ss_pred HHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH--
Q 040758 236 RYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS-- 306 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~-- 306 (788)
..++..+|+|+.+++. +++. .+++++|++.+.+.. ..+..++...+.++..+++++ +.+.+.+++.+
T Consensus 374 ~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v 449 (1495)
T PLN03232 374 STLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLI 449 (1495)
T ss_pred HHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHH
Confidence 5677788999887765 2221 379999999998864 344445555544444333332 22332222111
Q ss_pred -HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 040758 307 -IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFF 385 (788)
Q Consensus 307 -~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (788)
++.+.+..++.++..+..++..+...+....+.|..+++++||.|+.|+.+.++ +++..++..+...+.......
T Consensus 450 ~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~----~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 450 LFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESR----IQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 122223445667776666666666666677778999999999999999877654 444333322222222222211
Q ss_pred HHHHHHHHH-HH-HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCC
Q 040758 386 TSGYRYLIQ-IL-PAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKN 463 (788)
Q Consensus 386 ~~~~~~~~~-~~-~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~ 463 (788)
...+..... ++ .+.++++.+.+|.+|.|.+.+++.++..+..++..+...+..+......++|+.++.+. ++...
T Consensus 526 ~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~---~~~~~ 602 (1495)
T PLN03232 526 NSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLS---EERIL 602 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ccccc
Confidence 111111111 11 13345667778899999998888888888888877777667777778888888776432 11000
Q ss_pred CCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHH
Q 040758 464 LSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542 (788)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTL 542 (788)
.. .+ ......+.|+++|++|+|+++ ++++|+|+||+|++||+++||||||||||||
T Consensus 603 --~~------------~~---------~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTL 659 (1495)
T PLN03232 603 --AQ------------NP---------PLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSL 659 (1495)
T ss_pred --cc------------cC---------CcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHH
Confidence 00 00 000112369999999999752 4679999999999999999999999999999
Q ss_pred HHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCC
Q 040758 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTW 622 (788)
Q Consensus 543 l~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~ 622 (788)
+++|+|+++|++|.+.. +|++|+||+|+|++|++||||||.||.+
T Consensus 660 l~lLlG~~~~~~G~i~~-----------------------------------~~~~Iayv~Q~p~Lf~gTIreNI~fg~~ 704 (1495)
T PLN03232 660 ISAMLGELSHAETSSVV-----------------------------------IRGSVAYVPQVSWIFNATVRENILFGSD 704 (1495)
T ss_pred HHHHhCCCcccCCCEEE-----------------------------------ecCcEEEEcCccccccccHHHHhhcCCc
Confidence 99999999999987742 2456999999999999999999999853
Q ss_pred ccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHH
Q 040758 623 TEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRL 700 (788)
Q Consensus 623 ~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRi 700 (788)
. +++++.++++.+++.+... .++|++|. +|+|.+|||||||||
T Consensus 705 ~-----------------------------------~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRI 749 (1495)
T PLN03232 705 F-----------------------------------ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRV 749 (1495)
T ss_pred c-----------------------------------CHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHH
Confidence 1 3355666777777654333 35899997 999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+||||++++|+|+||||||||||+++++.+.+. ++. +++|+|+||||++.++.||+|++|++|+.
T Consensus 750 aLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i 817 (1495)
T PLN03232 750 SMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMI 817 (1495)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999988765 443 68999999999999999999999999864
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=561.77 Aligned_cols=497 Identities=15% Similarity=0.133 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVL--RDYARETLALRWRSWMTKYYM 234 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l~~~~~ 234 (788)
+++.+++.++..++.+..|++++.++|.+..++.. +...++. ++++++.++..+ ..+... .......+
T Consensus 303 ~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~--~~~~~~~-~~l~~~~~~~~~~~~~~~~~-------~~~~~~~i 372 (1622)
T PLN03130 303 FWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA--WIGYIYA-FSIFVGVVLGVLCEAQYFQN-------VMRVGFRL 372 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHH-HHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 44555566677778889999999999988654421 1111111 111111111110 011100 11122335
Q ss_pred HHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 235 ERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 235 ~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
...++..+|.|+.+++. +.+ . .+++++|++.+.... ..+..++...+.++..+++++..-++..++.++.++
T Consensus 373 r~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~-~~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~ 451 (1622)
T PLN03130 373 RSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQIC-QQLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLV 451 (1622)
T ss_pred HHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677788999887765 222 1 378999999998865 344555555555544444443322222222222222
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+.+.+..++.++..+..++..+...+....+.|.++++++||.|+.|+...+ ++.+..+...+..++.........
T Consensus 452 l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~----~i~~~r~~e~~~~~~~~~~~~~~~ 527 (1622)
T PLN03130 452 LMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQS----KVQTVRDDELSWFRKAQLLSAFNS 527 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445566666666655666666666777899999999999999987664 444333332222222222222211
Q ss_pred HHHHHHH--HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 388 GYRYLIQ--ILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 388 ~~~~~~~--~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.+..... +..+.++++.+.+|.+|.|.+..++.++..+..++..+...+..+......++|+.++.+..+.. ...
T Consensus 528 ~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~---~~~ 604 (1622)
T PLN03130 528 FILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERV---LLP 604 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccc---ccc
Confidence 1111111 12233456677789999999888888888777777776666667777778888887764321100 000
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
. + ......+.|+++|++|+|+++ ++++|+|+||+|++||.++||||||||||||++
T Consensus 605 ~--------------~---------~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~ 661 (1622)
T PLN03130 605 N--------------P---------PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLIS 661 (1622)
T ss_pred C--------------C---------cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 0 0 000112469999999999743 367999999999999999999999999999999
Q ss_pred HHhcCCCCCC-ceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCc
Q 040758 545 AMAGLWSDGR-GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWT 623 (788)
Q Consensus 545 lL~gl~~p~~-G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~ 623 (788)
+|+|+++|++ |+|.+ +++|+||+|+|++|++||||||.||.+.
T Consensus 662 lLlG~~~~~~GG~I~l------------------------------------~~~Iayv~Q~p~LfngTIreNI~fg~~~ 705 (1622)
T PLN03130 662 AMLGELPPRSDASVVI------------------------------------RGTVAYVPQVSWIFNATVRDNILFGSPF 705 (1622)
T ss_pred HHHHhhccCCCceEEE------------------------------------cCeEEEEcCccccCCCCHHHHHhCCCcc
Confidence 9999999999 99975 3459999999999999999999998542
Q ss_pred cccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHH
Q 040758 624 EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLA 701 (788)
Q Consensus 624 ~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRia 701 (788)
+++++.++++.+++...+.. ++|++|. +|+|.+|||||||||+
T Consensus 706 -----------------------------------d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIa 750 (1622)
T PLN03130 706 -----------------------------------DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVS 750 (1622)
T ss_pred -----------------------------------cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHH
Confidence 23566677777777654443 5899997 9999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 702 FARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 702 IARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||||++++|+|+||||||||||+++++.+.+. ++. +|+|+|+||||++.++.||+|++|++|+.
T Consensus 751 LARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i 817 (1622)
T PLN03130 751 MARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMI 817 (1622)
T ss_pred HHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999988654 543 68999999999999999999999999864
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=543.18 Aligned_cols=450 Identities=20% Similarity=0.254 Sum_probs=341.7
Q ss_pred HHhhhhhHHHHhcCC--CCC-Cch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQS--IID-NPD----QRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~--~~~-~~~----~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+.|.+.++..+.+.| +|| +|. ||.+.|++.+-...-..+..++..++.++++++++....||.+++++...++
T Consensus 891 ~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~ 970 (1381)
T KOG0054|consen 891 RKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVI 970 (1381)
T ss_pred HHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHH
Confidence 334445555665544 455 343 7999999999877766777788888888888888888888887777777777
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
+.++-.++.+..+.+.+.....++-+.+++.|+++++.+||+|+.|+++.+.+..+.+...+.+.-.....+.+......
T Consensus 971 ~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ 1050 (1381)
T KOG0054|consen 971 YYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLEL 1050 (1381)
T ss_pred HHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776676666666677778888899999999999999998877655444444444333333333444444443
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchh
Q 040758 389 YRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPL 468 (788)
Q Consensus 389 ~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~ 468 (788)
++.+..+.... .+.+...+.++.|.+...+++..++.+.+.+++.....+.....+.+|+.++.++..+++..
T Consensus 1051 ig~~~v~~~al-~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~------ 1123 (1381)
T KOG0054|consen 1051 LGNLVVLIAAL-FAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLE------ 1123 (1381)
T ss_pred HHHHHHHHHHH-HHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCC------
Confidence 33322221111 11222222266787777777777888888888877766666666788888776543321100
Q ss_pred hhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 469 EKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.. ...+++..+.+|.|+|+|++.+|.++..+||+||||+|+|||++||||++|||||||+++|-|
T Consensus 1124 --------------~~-~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1124 --------------IE-ESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred --------------Cc-CCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 00 000112234678999999999997666789999999999999999999999999999999999
Q ss_pred CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccch
Q 040758 549 LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP 628 (788)
Q Consensus 549 l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~ 628 (788)
+.+|.+|+|.+||.|..++ .+.++|++++++||||.||+||+|.|+. +
T Consensus 1189 l~e~~~G~I~IDgvdI~~i-----------------------gL~dLRsrlsIIPQdPvLFsGTvR~NLD---P------ 1236 (1381)
T KOG0054|consen 1189 LVEPAEGEILIDGVDISKI-----------------------GLHDLRSRLSIIPQDPVLFSGTVRFNLD---P------ 1236 (1381)
T ss_pred hcCccCCeEEEcCeecccc-----------------------cHHHHHhcCeeeCCCCceecCccccccC---c------
Confidence 9999999999976665544 3446788899999999999999999983 1
Q ss_pred hhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHH
Q 040758 629 ASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLL 706 (788)
Q Consensus 629 ~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARAL 706 (788)
| .+.+|++++++||.+++..... .++|+|+. .|.|.++|-||||.+++||||
T Consensus 1237 ------------f--------------~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARAL 1290 (1381)
T KOG0054|consen 1237 ------------F--------------DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARAL 1290 (1381)
T ss_pred ------------c--------------cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHH
Confidence 1 1357899999999999977554 46889997 899999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++++||+|||||+++|++|...||+.+++ +++|||.||||+.++-.||||+||++|+.
T Consensus 1291 Lr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v 1351 (1381)
T KOG0054|consen 1291 LRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRV 1351 (1381)
T ss_pred hccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeE
Confidence 999999999999999999999999999997 69999999999999999999999999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=518.02 Aligned_cols=503 Identities=15% Similarity=0.126 Sum_probs=329.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
++..+++.++..++.+..|++++.++|.+...+... ....++.++++++.++..++. .. . .+........+..
T Consensus 319 ~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~----~~-~-~~~~~~~~~~ir~ 391 (1522)
T TIGR00957 319 FLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD-WQGYFYTGLLFVCACLQTLIL----HQ-Y-FHICFVSGMRIKT 391 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-chHHHHHHHHHHHHHHHHHHH----HH-H-HHHHHHHHHHHHH
Confidence 444556667777888999999999999775443211 111111111111111111111 00 0 0111112233556
Q ss_pred HhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGG 309 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~ 309 (788)
.++..+|.|+.+++. +++. .+++++|++.+.... ..+..++...+.++..+++++..-.+.+++.++.+++.
T Consensus 392 ~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~ 470 (1522)
T TIGR00957 392 AVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLM 470 (1522)
T ss_pred HHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677888999988765 2221 379999999988743 34445555555555444444433333333333334444
Q ss_pred HHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 040758 310 TAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGY 389 (788)
Q Consensus 310 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (788)
+.+..++.+++.+......+...+....+.|..+++++||.|+.|+...++ +++..+...+..+............
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~----i~~~r~~e~~~~~~~~~~~~~~~~~ 546 (1522)
T TIGR00957 471 VPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDK----VEGIRQEELKVLKKSAYLHAVGTFT 546 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666778999999999999999877654 4333333222222222222222221
Q ss_pred HHHHHHHHH--HHHHHHHhc--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 390 RYLIQILPA--AVVAPMYFS--GKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 390 ~~~~~~~~~--~~~~~l~~~--G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
.....++.. .++++.+.. +.++.+.+...+.++..+..++..+...+..+......++|+.++.+..+.... .
T Consensus 547 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~--~- 623 (1522)
T TIGR00957 547 WVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD--S- 623 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--c-
Confidence 111111111 122344443 467888777777777777777777777667777777888888776432111000 0
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRA 545 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~l 545 (788)
.. . .... ....+.|+++|++|+|+++++++|+|+||+|++||+++|+||||||||||+++
T Consensus 624 --~~----------------~-~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~ 683 (1522)
T TIGR00957 624 --IE----------------R-RTIK-PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSA 683 (1522)
T ss_pred --cc----------------c-cccC-CCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHH
Confidence 00 0 0000 00123699999999997544679999999999999999999999999999999
Q ss_pred HhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccc
Q 040758 546 MAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEE 625 (788)
Q Consensus 546 L~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~ 625 (788)
|+|+++|++|+|.++ .+|+||||+|++|++||+|||.+|....
T Consensus 684 l~g~~~~~~G~i~~~------------------------------------g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~- 726 (1522)
T TIGR00957 684 LLAEMDKVEGHVHMK------------------------------------GSVAYVPQQAWIQNDSLRENILFGKALN- 726 (1522)
T ss_pred HhCCCccCCcEEEEC------------------------------------CEEEEEcCCccccCCcHHHHhhcCCccC-
Confidence 999999999999873 1399999999999999999999975311
Q ss_pred cchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHH
Q 040758 626 VKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFA 703 (788)
Q Consensus 626 ~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIA 703 (788)
+++..++++.+++..... .++|++|. +++|.+|||||||||+||
T Consensus 727 ----------------------------------~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLA 772 (1522)
T TIGR00957 727 ----------------------------------EKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 772 (1522)
T ss_pred ----------------------------------HHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHH
Confidence 122233333333332222 24788886 899999999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 704 RLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 704 RALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
||++++|+++|||||||+||+++++.+.+.+.+ .++|+|+|||+++.+..||+|++|++|+.
T Consensus 773 RAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i 839 (1522)
T TIGR00957 773 RAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKI 839 (1522)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeE
Confidence 999999999999999999999999999998742 47999999999999888999999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=440.20 Aligned_cols=572 Identities=25% Similarity=0.396 Sum_probs=403.5
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
.+..+.+++-|-..+++.... .+-. ++...-+.+++.++.+-|.++..++.++...|.+.++-|+++.+-+.....
T Consensus 100 ~l~~L~Kilip~vfc~e~gll---~~hs-~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~~~LlkW~liaiPAtFvNS 175 (728)
T KOG0064|consen 100 RLNVLSKILIPTVFCKETGLL---TAQS-FFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFLWDLLKWFLIAIPASFVNS 175 (728)
T ss_pred HHHHHHHHhcchHHHHhhhHH---HHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHhhhccHHHHHH
Confidence 355667777787665443211 2222 223344567888899999999999998888888777766554443433444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC-CCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS-IIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNIL 291 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~-~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il 291 (788)
+..|+...++..+|+.++.+....|+.+++||++..+. ..+|+|+++|+|+..+...+..+..++...+++++.+.+.+
T Consensus 176 ~Iryle~klaLafrtrL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L 255 (728)
T KOG0064|consen 176 AIRYLESKLALAFRTRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTL 255 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56788889999999999999999999999999997754 47899999999999999888888888888999888776665
Q ss_pred HhhhhhH----HHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHH
Q 040758 292 YGIYPPL----FVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRS 367 (788)
Q Consensus 292 ~~~~~~L----~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~ 367 (788)
....... .+++.+.+.+-..+.+.+.+++.++..++..+.+.++..+.+.+.|.|+|++|++.+.|.+.+.+.|..
T Consensus 256 ~~s~~s~g~~~~~~~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~ 335 (728)
T KOG0064|consen 256 LDSATSVGAAGITLAGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNR 335 (728)
T ss_pred HhhhccccccchhhhhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHH
Confidence 4432111 011111112223456678888999988899999999999999999999999999999999888777777
Q ss_pred HHHHHHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHh-----cCcccH---HH--HHHHHH---HHHHHHHHHHH
Q 040758 368 AFENLTRLLISSRNL---EFFTSGYRYLIQILPAAVVAPMYF-----SGKIEF---GV--INQSVS---AFNHILGDFSL 431 (788)
Q Consensus 368 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~-----~G~it~---G~--l~~~~~---~~~~~~~~l~~ 431 (788)
..+............ .-+..-|.|...-+ ..++.+.+. .|..+. |. ...+.. +......++..
T Consensus 336 L~~qm~li~k~r~~YiMleqF~mKYvWsg~Gl-vmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieR 414 (728)
T KOG0064|consen 336 LVEQMNLIFKVRLWYIMLEQFVMKYTWSGTGL-VMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIER 414 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCce-EEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 766543322211111 11111111100000 000111111 111111 11 111111 11222234456
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhcccccCCCC-Cchh-hhhhhhccccCCCCCCC-CCCCCCCcCCCCcEEEeeeEEEc
Q 040758 432 IVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNL-SEPL-EKICLTYCSVKSFPTSK-CNGALSPEKSQKLLDIEDLTLKT 508 (788)
Q Consensus 432 ~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~I~~~nvsf~y 508 (788)
++..+..+.++..+..|+.+...++++.....- .... +..... ......... -++.. .......|.++||..-.
T Consensus 415 lMssyKeItqLaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~--~~~e~r~s~~l~~~~-~i~~~~gI~lenIpvIt 491 (728)
T KOG0064|consen 415 LMSSYKEITQLAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSR--TIDESRNSNPLPTTD-AIRNFNGIILENIPVIT 491 (728)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccccccccCchhhcc--CccccccCCcCCccc-hhhcccceEEecCceec
Confidence 677777777777888888876665543321100 0000 000000 000000000 00000 01133469999999999
Q ss_pred CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 509 PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 509 ~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
|. ++.++..++|+|++|-++.|+||||||||+|+++|.|+||...|...+
T Consensus 492 P~-~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~----------------------------- 541 (728)
T KOG0064|consen 492 PA-GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI----------------------------- 541 (728)
T ss_pred cC-cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec-----------------------------
Confidence 86 567889999999999999999999999999999999999999998764
Q ss_pred hcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
..+.+|.|+||.||+--||+||+|.||+..+++.+ +...+.++++.|.
T Consensus 542 -----P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~~~~---------------------------kg~~d~dL~~iL~ 589 (728)
T KOG0064|consen 542 -----PRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQMKR---------------------------KGYTDQDLEAILD 589 (728)
T ss_pred -----CCCcceEeccCCCccCcCcccceeecCCcHHHHHh---------------------------cCCCHHHHHHHHH
Confidence 11345999999999999999999999976544321 2346789999999
Q ss_pred hcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc
Q 040758 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~ 748 (788)
.+.++++..+-.|+|.+.+|-..||||||||+++||.++++|+.-+|||+|||+.++.|..++++.+..|.+.|.||||+
T Consensus 590 ~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~gi~llsithrp 669 (728)
T KOG0064|consen 590 IVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDAGISLLSITHRP 669 (728)
T ss_pred HhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhcCceEEEeecCc
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhcCCEEEEEccCCCCCCCCCeEEEecCcc
Q 040758 749 TLYDFHKRVLRISTVDQNSSQSNWKLEFIDQE 780 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~~~~~~~~~~~~~~~~~ 780 (788)
++.+++.+.+.. ++.|+|+++.++.+
T Consensus 670 slwk~h~~ll~~------dg~g~~q~~~ln~~ 695 (728)
T KOG0064|consen 670 SLWKYHTHLLEF------DGEGGWQFRALNTE 695 (728)
T ss_pred cHHHHHHHHHhc------cCCCCeeeccCChh
Confidence 999999988876 36899999999874
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=497.49 Aligned_cols=526 Identities=17% Similarity=0.185 Sum_probs=337.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 157 LAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 157 l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+++.+++.++..++.+..|++++.+++.+..++.. ......+.+++++..++..++... . .+........+..
T Consensus 246 ~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~~-~~~g~~l~~~l~~~~~~~~~~~~~-~-----~~~~~r~~~~~r~ 318 (1560)
T PTZ00243 246 VWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNAT-WGRGLGLVLTLFLTQLIQSVCLHR-F-----YYISIRCGLQYRS 318 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHHHHHHHHHHHHHHHH-H-----HHHHHHHHHHHHH
Confidence 44566667778889999999999999987544321 111111111222111111111100 0 0111111222444
Q ss_pred HhhhhhHHHHhcCCC--CCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 040758 237 YLKDQTFYKIQSQSI--IDNP-------DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSI 307 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~--~~~~-------~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~ 307 (788)
.|...+|.|..+++. ..++ .+.+++|++.+..+.. ....++...+.++..+++|+.+.+|.+++.++.++
T Consensus 319 ~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~-~~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~ 397 (1560)
T PTZ00243 319 ALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQ-YCMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLL 397 (1560)
T ss_pred HHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566677888776554 2211 3788899999998653 44566777777766667777777777776666666
Q ss_pred HHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 040758 308 GGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTS 387 (788)
Q Consensus 308 ~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (788)
+.+.+..++.++.....+...+...+-.....|.+++++.||.++.|+...+ ++++..+.-.+..++......+..
T Consensus 398 v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~----ri~~~R~~El~~l~~~~~~~~~~~ 473 (1560)
T PTZ00243 398 VTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVA----NIEDKRARELRYLRDVQLARVATS 473 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777666555555554445556899999999999999987765 444433322222222222222222
Q ss_pred HHHHHHHHHH--HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC--C
Q 040758 388 GYRYLIQILP--AAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK--N 463 (788)
Q Consensus 388 ~~~~~~~~~~--~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~--~ 463 (788)
.+......+. +.++++.+.+|.+|.|.+...+.+|+.+..++..+...+..+.....+++|+.++....+..... .
T Consensus 474 ~~~~~~p~l~~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~ 553 (1560)
T PTZ00243 474 FVNNATPTLMIAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQD 553 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccc
Confidence 2222222111 12345666788999999998899999888888888777777888888899998876432210000 0
Q ss_pred CCc------------h----hhhhhhh-ccccCCCC---CCC-----------CCC-CCCCcCCCCcEEEeeeEEEcC--
Q 040758 464 LSE------------P----LEKICLT-YCSVKSFP---TSK-----------CNG-ALSPEKSQKLLDIEDLTLKTP-- 509 (788)
Q Consensus 464 ~~~------------~----~~~~~~~-~~~~~~~~---~~~-----------~~~-~~~~~~~~~~I~~~nvsf~y~-- 509 (788)
..+ . +.+..+. +.....+. ... ... ........+.+.++|+++.+|
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (1560)
T PTZ00243 554 MEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSS 633 (1560)
T ss_pred chhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccc
Confidence 000 0 0000000 00000000 000 000 000001123456666666432
Q ss_pred ------------------------------------CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 510 ------------------------------------TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 510 ------------------------------------~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
.+++++|+|+||+|++||+++|+||||||||||+++|+|+++|+
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~ 713 (1560)
T PTZ00243 634 ASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS 713 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 12356899999999999999999999999999999999999999
Q ss_pred CceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHH
Q 040758 554 RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633 (788)
Q Consensus 554 ~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa 633 (788)
+|+|.+ ++.||||||+|++|++|++|||.++... +
T Consensus 714 ~G~i~~------------------------------------~~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~-------- 748 (1560)
T PTZ00243 714 EGRVWA------------------------------------ERSIAYVPQQAWIMNATVRGNILFFDEE-D-------- 748 (1560)
T ss_pred CcEEEE------------------------------------CCeEEEEeCCCccCCCcHHHHHHcCChh-h--------
Confidence 999976 1349999999999999999999986421 1
Q ss_pred HhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 634 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
.+++.++++.++++..++. ++|+++. ++++.+|||||||||+|||||+.+|+
T Consensus 749 --------------------------~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~ 802 (1560)
T PTZ00243 749 --------------------------AARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRD 802 (1560)
T ss_pred --------------------------HHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1122233333333333322 3677776 88999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-H--hcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 712 IVLLDESTSALDEANEAHLYEQI-E--AAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 712 iLiLDEpTSaLD~~se~~i~~~L-~--~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++|||||||+||+.+++.+.+.+ . ..|+|+|+|||+++.++.||+|++|++|+.
T Consensus 803 illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i 859 (1560)
T PTZ00243 803 VYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRV 859 (1560)
T ss_pred EEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 99999999999999998887643 2 258999999999999999999999999864
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-49 Score=500.00 Aligned_cols=520 Identities=16% Similarity=0.138 Sum_probs=318.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYL 238 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~L 238 (788)
+.+++.++..++.+..|++++.+++.+...+.........+.++++++.+ +..+..... .+........+...+
T Consensus 84 ~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~-----~~~~~~~~~~~r~~L 157 (1490)
T TIGR01271 84 FYGILLYFGEATKAVQPLLLGRIIASYDPFNAPEREIAYYLALGLCLLFI-VRTLLLHPA-----IFGLHHLGMQMRIAL 157 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHH-HHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 34444556667888999999999998743221111111111111111111 111110000 011111222244445
Q ss_pred hhhhHHHHhcCCC--CCC-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 239 KDQTFYKIQSQSI--IDN-----PDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 239 r~~~f~~l~~~~~--~~~-----~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
...+|+|+.+++. +++ -.+++++|++.+...... ...++...+.++.++++++...+|.+++.++.+++.+.
T Consensus 158 ~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~-~~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~ 236 (1490)
T TIGR01271 158 FSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLAL-AHFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLAL 236 (1490)
T ss_pred HHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888877654 222 137999999999885443 34455666666666667777777777666666666677
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++++++.+......+...+....+.|.++++++||.|+.|+.+.+ ++++..+.-.+..++..........+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~----~i~~~R~~El~~~~~~~~~~~~~~~~~~ 312 (1490)
T TIGR01271 237 FQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEK----IIKNIRQDELKLTRKIAYLRYFYSSAFF 312 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888887776666555555556666899999999999999987764 3333333222222221111111111111
Q ss_pred HHHH--HHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhhhcccccCCC-C---
Q 040758 392 LIQI--LPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFS-LIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKN-L--- 464 (788)
Q Consensus 392 ~~~~--~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~-~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~-~--- 464 (788)
+... ..+.++++.+.++ .+.+.+..++.+|..+..++. .+...+..+..+...++|+.++....+...... .
T Consensus 313 ~~~~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~~~~~~~ 391 (1490)
T TIGR01271 313 FSGFFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLEYNLTTT 391 (1490)
T ss_pred HHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCCCC
Confidence 1111 1112233444444 577777666666665555543 344445556667778889888754321110000 0
Q ss_pred CchhhhhhhhccccC-CC-CC-CCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 465 SEPLEKICLTYCSVK-SF-PT-SKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 465 ~~~~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.-.+.+..+.++... .. .. .............+.++++|++|.+ +++|+|+||+|++||.++|+|||||||||
T Consensus 392 ~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~----~~~l~~i~l~i~~G~~~~I~G~~GsGKST 467 (1490)
T TIGR01271 392 EVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYV----TPVLKNISFKLEKGQLLAVAGSTGSGKSS 467 (1490)
T ss_pred ceEEecceEecCCcccccccccccccccccccccccccccccccccc----CcceeeeEEEECCCCEEEEECCCCCCHHH
Confidence 000111111111000 00 00 0000000000011245555655532 46899999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+++|++|+|.++| .|+||+|+|++|++||+|||.||.
T Consensus 468 Ll~~l~G~~~~~~G~i~~~g------------------------------------~iayv~Q~~~l~~~Ti~eNI~~g~ 511 (1490)
T TIGR01271 468 LLMMIMGELEPSEGKIKHSG------------------------------------RISFSPQTSWIMPGTIKDNIIFGL 511 (1490)
T ss_pred HHHHHhCCCCCCCceEEECC------------------------------------EEEEEeCCCccCCccHHHHHHhcc
Confidence 99999999999999999731 399999999999999999999974
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQR 699 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQR 699 (788)
... .++..++++.+++...+.. ++|.+|. +++|.+||||||||
T Consensus 512 ~~~-----------------------------------~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqR 556 (1490)
T TIGR01271 512 SYD-----------------------------------EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRAR 556 (1490)
T ss_pred ccc-----------------------------------hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHH
Confidence 211 1112223333333322222 3677775 89999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH-HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ-IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~-L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+||||++++|+++||||||||||+++++.+++. +.+ +|+|+|+|||+++.+..||+|++|++|+.
T Consensus 557 i~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~~g~i 625 (1490)
T TIGR01271 557 ISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVC 625 (1490)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999975 443 58999999999998888999999998863
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=466.63 Aligned_cols=497 Identities=19% Similarity=0.225 Sum_probs=327.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHH
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFV-LR--DYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~l~~~~~~ 235 (788)
+..++..+...+....|.+++.+++.+.+++.. .+...++.+++++..++-.. .. .+.....+.++|..+...
T Consensus 205 ~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~~-~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~--- 280 (1381)
T KOG0054|consen 205 LSGIFLFLRDLAGFVGPLLLKKLILFFSEKRLP-LNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISA--- 280 (1381)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHhcCCCcc-cchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHH---
Confidence 333333444444678899999999988765221 11111222222221111111 11 112234445555544444
Q ss_pred HHhhhhhHHHHhcCCCCC-------CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSIID-------NPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIG 308 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~~~-------~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~ 308 (788)
+|.|..+++-.. .-.+-++.|++.+.+.. .....++...+.++...++|+..-.+-+++-++..++
T Consensus 281 ------IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~-~~~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il 353 (1381)
T KOG0054|consen 281 ------IYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAA-CFLHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVL 353 (1381)
T ss_pred ------HHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 444444443321 11367889999998854 4556777777777766666665555544444444455
Q ss_pred HHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040758 309 GTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSG 388 (788)
Q Consensus 309 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (788)
.+.+..+++++..+....+.+...+-.....|.+.||+.||.|+-|+.+.+++ ++..++-.+..++......+...
T Consensus 354 ~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I----~~~R~~El~~lrk~~~~~~~~~~ 429 (1381)
T KOG0054|consen 354 LIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKI----EDLRQKELKLLRKSAYLSALNSF 429 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666555544444333344579999999999999997766433 22222211111222112222222
Q ss_pred HHHHHHHHHHHH--HHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCC
Q 040758 389 YRYLIQILPAAV--VAPM-YFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLS 465 (788)
Q Consensus 389 ~~~~~~~~~~~~--~~~l-~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~ 465 (788)
......++..++ +++. ..++.+|.......+++|+.+..++..+-.....+.++..+++|+.++....+....
T Consensus 430 ~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~---- 505 (1381)
T KOG0054|consen 430 LNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD---- 505 (1381)
T ss_pred HHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc----
Confidence 222222211111 1222 234566666666677788888888777666666677777888998877532111100
Q ss_pred chhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHH
Q 040758 466 EPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLR 544 (788)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~ 544 (788)
...+ .+.+..+..++++|.+|+++. +..+.|+||||+|++|+.+||||+.|||||+|+.
T Consensus 506 -~~~~-------------------~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~ 565 (1381)
T KOG0054|consen 506 -SVER-------------------SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLS 565 (1381)
T ss_pred -cccc-------------------CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHH
Confidence 0000 011123346999999999975 2445999999999999999999999999999999
Q ss_pred HHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc
Q 040758 545 AMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE 624 (788)
Q Consensus 545 lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~ 624 (788)
+|+|-.+..+|++.++ ..++||||.|++|+|||||||.||.+-
T Consensus 566 AiLGEm~~~sG~v~v~------------------------------------gsiaYv~Q~pWI~ngTvreNILFG~~~- 608 (1381)
T KOG0054|consen 566 AILGEMPKLSGSVAVN------------------------------------GSVAYVPQQPWIQNGTVRENILFGSPY- 608 (1381)
T ss_pred HHhcCcccccceEEEc------------------------------------CeEEEeccccHhhCCcHHHhhhcCccc-
Confidence 9999999999999873 239999999999999999999998643
Q ss_pred ccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHH
Q 040758 625 EVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAF 702 (788)
Q Consensus 625 ~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaI 702 (788)
+.+...++++.+.++..++. +.|-.|. ||+|.+|||||||||++
T Consensus 609 ----------------------------------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsL 654 (1381)
T KOG0054|consen 609 ----------------------------------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISL 654 (1381)
T ss_pred ----------------------------------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHH
Confidence 33556666777777654444 4676776 99999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 703 ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 703 ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||+++|++|.+||+|.||+|+++.+.|++..-+ .+||+|++||.++.++.||+|++|++|+.
T Consensus 655 ARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 655 ARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred HHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999886533 58999999999999999999999999975
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-48 Score=384.59 Aligned_cols=208 Identities=26% Similarity=0.385 Sum_probs=170.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ +..+|+|||++|++||+++|+||||||||||+|+|.|+.+|++|+|.++|.+...-
T Consensus 2 mi~i~~l~K~fg--~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~---------- 69 (240)
T COG1126 2 MIEIKNLSKSFG--DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDK---------- 69 (240)
T ss_pred eEEEEeeeEEeC--CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccch----------
Confidence 589999999995 56799999999999999999999999999999999999999999999964322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+|+++|+|||+..||+ .|+.||+.++-... ....+
T Consensus 70 ------------~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v---------------------------~~~~k 110 (240)
T COG1126 70 ------------KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV---------------------------KKLSK 110 (240)
T ss_pred ------------hhHHHHHHhcCeecccccccccchHHHHHHhhhHHH---------------------------cCCCH
Confidence 023356888999999999995 69999998853211 00011
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+...+.|+++|+.+. .+.++.+|||||||||||||||+.+|+++++|||||||||+...++.+.++
T Consensus 111 ~eA~~~A~~lL~~VGL~~k---------a~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~ 181 (240)
T COG1126 111 AEAREKALELLEKVGLADK---------ADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181 (240)
T ss_pred HHHHHHHHHHHHHcCchhh---------hhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHH
Confidence 1112345677888877643 345688899999999999999999999999999999999999999887765
Q ss_pred --hcCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|.|.|++||.+.+++ .||||+.|++|..
T Consensus 182 LA~eGmTMivVTHEM~FAr~VadrviFmd~G~i 214 (240)
T COG1126 182 LAEEGMTMIIVTHEMGFAREVADRVIFMDQGKI 214 (240)
T ss_pred HHHcCCeEEEEechhHHHHHhhheEEEeeCCEE
Confidence 47999999999999875 6999999999853
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-47 Score=396.67 Aligned_cols=213 Identities=23% Similarity=0.310 Sum_probs=178.4
Q ss_pred cEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|++++|++.|+.. ...+|+|+||+|++||++||+|+||||||||+|++.++..|++|+|.+||.|...++
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~------ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALS------ 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCC------
Confidence 48999999999752 235899999999999999999999999999999999999999999999765544432
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...++..|++||++||++.|++ .|+.+|++||-.-...
T Consensus 75 --------------~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~--------------------------- 113 (339)
T COG1135 75 --------------EAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV--------------------------- 113 (339)
T ss_pred --------------hHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcCC---------------------------
Confidence 2345567889999999999997 7999999997422110
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.+..-.+++.+.|+.+|+.+.. +.++.+|||||||||+|||||+.+|+||+.|||||||||++.+.|.+.
T Consensus 114 -~k~ei~~RV~elLelVgL~dk~---------~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~L 183 (339)
T COG1135 114 -PKAEIKQRVAELLELVGLSDKA---------DRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILEL 183 (339)
T ss_pred -CHHHHHHHHHHHHHHcCChhhh---------ccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHH
Confidence 0111235677889988877543 346788999999999999999999999999999999999999999998
Q ss_pred HHh----cCCEEEEEecCcchhh-cCCEEEEEccCCCCC
Q 040758 734 IEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQNS 767 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~~ 767 (788)
|++ .|.|+++|||-+++++ .|||+.||++|+...
T Consensus 184 L~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE 222 (339)
T COG1135 184 LKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222 (339)
T ss_pred HHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEE
Confidence 864 5999999999999875 799999999997633
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=376.02 Aligned_cols=210 Identities=26% Similarity=0.359 Sum_probs=168.6
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++||++.|..++ ..+|+++||+|++||.++|+||||||||||+++|.|+..|++|.|.++|.|...++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~-------- 73 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLS-------- 73 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCC--------
Confidence 67899999996433 36899999999999999999999999999999999999999999999765544432
Q ss_pred hhhcccccccchhcccc-cCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...+. ..+++||||||+..|++. |+.|||.+|..-...
T Consensus 74 ------------~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---------------------------- 113 (226)
T COG1136 74 ------------EKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---------------------------- 113 (226)
T ss_pred ------------HHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC----------------------------
Confidence 11111 235679999999999975 999999864211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..........+.++.+++++... ..++.+|||||||||||||||+++|++++.||||++||.++.+.|++.+
T Consensus 114 ~~~~~~~~~~~l~~~lgl~~~~~--------~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll 185 (226)
T COG1136 114 SAGRRKRAAEELLEVLGLEDRLL--------KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELL 185 (226)
T ss_pred ChhHHHHHHHHHHHhcCChhhhc--------cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHH
Confidence 00011244566677777653322 2446789999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+ .|+|+|+|||+..+..+|||++.|.+|+
T Consensus 186 ~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 186 RELNKERGKTIIMVTHDPELAKYADRVIELKDGK 219 (226)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCe
Confidence 64 4899999999999999999999999986
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=373.01 Aligned_cols=199 Identities=26% Similarity=0.344 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++|++.|++ ..+|+|+||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|. .++
T Consensus 3 ~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~---~v~--------- 68 (248)
T COG1116 3 LLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR---PVT--------- 68 (248)
T ss_pred eEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---ccC---------
Confidence 5899999999963 67999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+|||||++.||+- |++||+.++..... ...
T Consensus 69 ----------------~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~----------------------------~~~ 104 (248)
T COG1116 69 ----------------GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG----------------------------KSK 104 (248)
T ss_pred ----------------CCCCCEEEEeccCcccchhhHHhhheehhhccc----------------------------cch
Confidence 223459999999999985 99999999743211 001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+.+.+.|+.+|+..+. +.++.+||||||||+||||||+.+|++|+||||++|||+.|...+++.|.
T Consensus 105 ~e~~~~a~~~L~~VgL~~~~---------~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~ 175 (248)
T COG1116 105 AEARERAKELLELVGLAGFE---------DKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLR 175 (248)
T ss_pred HhHHHHHHHHHHHcCCcchh---------hcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHH
Confidence 11234677889988876443 45678899999999999999999999999999999999999999998774
Q ss_pred ---hcCCEEEEEecCcc-hhhcCCEEEEEccC
Q 040758 736 ---AAGITYISVGHRRT-LYDFHKRVLRISTV 763 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g 763 (788)
+.++|+++|||+.+ .+..+|||++|.++
T Consensus 176 lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 176 LWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred HHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 36899999999974 56789999999985
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=372.79 Aligned_cols=207 Identities=25% Similarity=0.331 Sum_probs=171.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+|+|||+.|. ++.+++|+||+|++||.++++|||||||||++|+|.|+++|++|+|++||++..+++
T Consensus 1 MI~~~nvsk~y~--~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d--------- 69 (309)
T COG1125 1 MIEFENVSKRYG--NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD--------- 69 (309)
T ss_pred CceeeeeehhcC--CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCC---------
Confidence 489999999996 578999999999999999999999999999999999999999999999766554431
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCC-CCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYP-TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~-~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...+|++||||-|...|| +.||.|||++- ... +. .
T Consensus 70 --------------~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~--------------------------~w---~ 106 (309)
T COG1125 70 --------------PVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL--------------------------GW---D 106 (309)
T ss_pred --------------HHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc--------------------------CC---C
Confidence 235688999999999999 56999999862 110 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
++..++++.+.|+.++++.. +....++.+|||||+|||.+||||+.+|++|++|||++||||.+...+|+.+.
T Consensus 107 k~~i~~r~~ELl~lvgL~p~-------~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~ 179 (309)
T COG1125 107 KERIKKRADELLDLVGLDPS-------EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179 (309)
T ss_pred HHHHHHHHHHHHHHhCCCHH-------HHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHH
Confidence 01123457778888877531 11234578899999999999999999999999999999999999999999875
Q ss_pred h----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+||||++ .++.+|||.+|++|+.
T Consensus 180 ~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i 214 (309)
T COG1125 180 ELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEI 214 (309)
T ss_pred HHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeE
Confidence 3 5999999999984 5789999999999974
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=377.13 Aligned_cols=210 Identities=28% Similarity=0.392 Sum_probs=174.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||.+..++
T Consensus 2 ~L~~~~ls~~y~--~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~---------- 69 (258)
T COG1120 2 MLEVENLSFGYG--GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASL---------- 69 (258)
T ss_pred eeEEEEEEEEEC--CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhc----------
Confidence 489999999996 57899999999999999999999999999999999999999999999965544333
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+.+.+.+|||||++... .-|++|-+.+|.... .. ......
T Consensus 70 -------------~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~-----------------~~-------~~~~~~ 112 (258)
T COG1120 70 -------------SPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPH-----------------LG-------LFGRPS 112 (258)
T ss_pred -------------CHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcc-----------------cc-------cccCCC
Confidence 2334567799999997554 559999999876431 00 000112
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+.+.+.++|+.+++.++.++. ..+||||||||+.|||||+++|++|+||||||+||...+.++++.+++
T Consensus 113 ~~D~~~v~~aL~~~~~~~la~r~---------~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~ 183 (258)
T COG1120 113 KEDEEIVEEALELLGLEHLADRP---------VDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183 (258)
T ss_pred HhHHHHHHHHHHHhCcHHHhcCc---------ccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence 23344678899999888766553 567999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+|+|+|++.|+++. .+|||++++|++|+.
T Consensus 184 l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i 217 (258)
T COG1120 184 LNREKGLTVVMVLHDLNLAARYADHLILLKDGKI 217 (258)
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 58999999999976 589999999999975
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-45 Score=352.49 Aligned_cols=210 Identities=26% Similarity=0.332 Sum_probs=175.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+|+||++.|+++ +++|+|+||+|++||.+-|+||||||||||+|+|++...|++|+|+++|.|...+.
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~--------- 70 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLK--------- 70 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccc---------
Confidence 48999999999974 78999999999999999999999999999999999999999999999766655442
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+|++||+|+||.-|.. .|+.||++|+-.-... ..
T Consensus 71 -----------~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~----------------------------~~ 111 (223)
T COG2884 71 -----------GREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGK----------------------------PP 111 (223)
T ss_pred -----------ccccchhhheeeeEeeeccccccchHhhhhhhhhhccCC----------------------------CH
Confidence 1123357899999999998885 5999999996322110 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..-.+++.++|+.+|+.+.... .+.+||||||||++||||++.+|++||.||||.+|||+...+|++.+.+
T Consensus 112 ~~i~~rV~~~L~~VgL~~k~~~---------lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfee 182 (223)
T COG2884 112 REIRRRVSEVLDLVGLKHKARA---------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE 182 (223)
T ss_pred HHHHHHHHHHHHHhccchhhhc---------CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence 1123568889999988754333 3678999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|.||++.||+.++++ +-.|++.|++|+.
T Consensus 183 inr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl 215 (223)
T COG2884 183 INRLGTTVLMATHDLELVNRMRHRVLALEDGRL 215 (223)
T ss_pred HhhcCcEEEEEeccHHHHHhccCcEEEEeCCEE
Confidence 7999999999999875 4578999999975
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=363.38 Aligned_cols=218 Identities=26% Similarity=0.401 Sum_probs=179.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+..||+ ++.+|+||||+|++||++||+||||||||||+|+|.|+.+|++|+|.++|.+.....
T Consensus 3 ~i~~~nl~k~yp~-~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~--------- 72 (258)
T COG3638 3 MIEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLK--------- 72 (258)
T ss_pred eEEEeeeeeecCC-CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccc---------
Confidence 6999999999984 778999999999999999999999999999999999999999999999654433221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.+|++|||++|.+.|.+. |+.+|+..|.... .+... .+.....
T Consensus 73 -----------~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~--------------~s~~~------slfglfs 121 (258)
T COG3638 73 -----------GKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGY--------------TSTWR------SLFGLFS 121 (258)
T ss_pred -----------hHHHHHHHHhceeEeccCCcccccHHHHHHHhhhccc--------------chHHH------HHhCCCC
Confidence 22345678899999999999976 9999999875432 11111 1111222
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+.+.....++|+.+|+.+ ....+..+|||||+|||+|||||+++|++++.|||+|+|||.+.+.|++.|++
T Consensus 122 k~dk~~Al~aLervgi~~---------~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~ 192 (258)
T COG3638 122 KEDKAQALDALERVGILD---------KAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192 (258)
T ss_pred HHHHHHHHHHHHHcCcHH---------HHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence 334456788888887753 23345678999999999999999999999999999999999999999999864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+.-|..+++ +|||||+-|++|+.
T Consensus 193 in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 193 INQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 (258)
T ss_pred HHHHcCCEEEEEechHHHHHHHHhhheEecCCcE
Confidence 699999999999886 69999999999974
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=365.42 Aligned_cols=206 Identities=26% Similarity=0.450 Sum_probs=169.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++|.|.+ + ++|+||||+|++|++++|+||||||||||+|+|+|+.+|.+|+|.++|.+....
T Consensus 4 ~i~v~nl~v~y~~-~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~---------- 71 (254)
T COG1121 4 MIEVENLTVSYGN-R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKR---------- 71 (254)
T ss_pred EEEEeeeEEEECC-E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccc----------
Confidence 5999999999964 3 699999999999999999999999999999999999999999999954322111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..+..||||||.. +-|+-||+|-+..|..... +...+
T Consensus 72 ----------------~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~------------------------g~~~~ 111 (254)
T COG1121 72 ----------------RKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK------------------------GWFRR 111 (254)
T ss_pred ----------------ccCCeEEEcCcccccCCCCCcCHHHHHHccCcccc------------------------ccccc
Confidence 1135699999965 3467799999988754310 11111
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+.+.+++.++|+.+++.++.++. ..+|||||+||+.|||||+.+|++|+|||||+|+|+.++..+++.|
T Consensus 112 ~~~~d~~~v~~aL~~Vgm~~~~~r~---------i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 112 LNKKDKEKVDEALERVGMEDLRDRQ---------IGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred ccHHHHHHHHHHHHHcCchhhhCCc---------ccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHH
Confidence 2233457899999999988765543 5679999999999999999999999999999999999999999887
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~ 764 (788)
++ +|+||++|+||++. .+++|+|+.|++.-
T Consensus 183 ~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~ 216 (254)
T COG1121 183 KELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHL 216 (254)
T ss_pred HHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCee
Confidence 54 69999999999875 57899999998753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=388.76 Aligned_cols=204 Identities=28% Similarity=0.383 Sum_probs=172.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+ +..+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++..++.
T Consensus 5 ~l~i~~v~k~yg--~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lp--------- 73 (352)
T COG3842 5 ALEIRNVSKSFG--DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP--------- 73 (352)
T ss_pred eEEEEeeeeecC--CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 599999999996 578999999999999999999999999999999999999999999999655543331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+|+||+|||+..|| +.||+|||+||-... .+..
T Consensus 74 ----------------p~kR~ig~VFQ~YALFPHltV~~NVafGLk~~----------------------------~~~~ 109 (352)
T COG3842 74 ----------------PEKRPIGMVFQSYALFPHMTVEENVAFGLKVR----------------------------KKLK 109 (352)
T ss_pred ----------------hhhcccceeecCcccCCCCcHHHHhhhhhhhc----------------------------CCCC
Confidence 2357799999999999 579999999984310 0000
Q ss_pred C-CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 K-PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~-~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
. ...+.+.++|+.++++.+.. .++.+|||||||||||||||+.+|++|+||||.||||.+-...++..++
T Consensus 110 ~~~i~~rv~e~L~lV~L~~~~~---------R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk 180 (352)
T COG3842 110 KAEIKARVEEALELVGLEGFAD---------RKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELK 180 (352)
T ss_pred HHHHHHHHHHHHHHcCchhhhh---------hChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHH
Confidence 0 11246788898888875433 3578899999999999999999999999999999999999999988776
Q ss_pred h----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|.|.|+|||+. +.+..+|||.||++|+.
T Consensus 181 ~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I 215 (352)
T COG3842 181 ELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRI 215 (352)
T ss_pred HHHHhcCCeEEEEECCHHHHhhhccceEEccCCce
Confidence 4 699999999995 56789999999999975
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=375.68 Aligned_cols=209 Identities=26% Similarity=0.348 Sum_probs=177.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++++.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.+...+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~---------- 70 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSV---------- 70 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhC----------
Confidence 589999999997545679999999999999999999999999999999999998 789999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+|+.|+||||++.+|++|+++|+.+...
T Consensus 71 -------------~~~~lr~~i~~v~q~~~lf~~tv~~nl~~~~~----------------------------------- 102 (275)
T cd03289 71 -------------PLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK----------------------------------- 102 (275)
T ss_pred -------------CHHHHhhhEEEECCCcccchhhHHHHhhhccC-----------------------------------
Confidence 12234677999999999999999999953110
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..++++.++++.+++...... ++++++. ++.|.+||||||||++|||||+++|+||||||||++||+.+...+++.|+
T Consensus 103 ~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~ 182 (275)
T cd03289 103 WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLK 182 (275)
T ss_pred CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 123456677777777654444 5788986 78899999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|+||||++.+..||||++|++|+.
T Consensus 183 ~~~~~~tii~isH~~~~i~~~dri~vl~~G~i 214 (275)
T cd03289 183 QAFADCTVILSEHRIEAMLECQRFLVIEENKV 214 (275)
T ss_pred HhcCCCEEEEEECCHHHHHhCCEEEEecCCeE
Confidence 5 58999999999988888999999999875
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=380.49 Aligned_cols=204 Identities=25% Similarity=0.364 Sum_probs=171.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||++.|++ . .+|+|+||+|++||+++|+||||||||||||+|+||.+|++|+|.++|++..++.
T Consensus 3 ~i~l~~v~K~yg~-~-~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~--------- 71 (338)
T COG3839 3 ELELKNVRKSFGS-F-EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLP--------- 71 (338)
T ss_pred EEEEeeeEEEcCC-c-eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 5999999999963 2 2999999999999999999999999999999999999999999999765544431
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+|+||+|||+..||+ .||+|||+||-..... .+
T Consensus 72 ----------------P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~----------------------------~k 107 (338)
T COG3839 72 ----------------PEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV----------------------------PK 107 (338)
T ss_pred ----------------hhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC----------------------------ch
Confidence 23577999999999995 5999999997432110 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.++++.+++++++++ .+.+|||||||||||||||+++|++++||||+|+||+.....+...+++
T Consensus 108 ~ei~~rV~eva~~L~l~~lL~r---------~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~ 178 (338)
T COG3839 108 AEIDKRVKEVAKLLGLEHLLNR---------KPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKK 178 (338)
T ss_pred HHHHHHHHHHHHHcCChhHHhc---------CcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence 1234578888888888876655 3678999999999999999999999999999999999999888777654
Q ss_pred ----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|.+|||. +....+|||.+|++|..
T Consensus 179 lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i 212 (338)
T COG3839 179 LHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRI 212 (338)
T ss_pred HHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCee
Confidence 589999999995 66788999999999975
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=352.41 Aligned_cols=212 Identities=25% Similarity=0.280 Sum_probs=172.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-----ceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR-----GKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~-----G~I~~~~~~~~~i~~~~~ 572 (788)
.++++|+++.|+ ++.+|+|||++|++++++|++||||||||||+|++-|+.+..+ |+|.++|.|..+..
T Consensus 7 ~~~~~~l~~yYg--~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~---- 80 (253)
T COG1117 7 AIEVRDLNLYYG--DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK---- 80 (253)
T ss_pred eeEecceeEEEC--chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC----
Confidence 589999999996 5679999999999999999999999999999999999999876 99999655433221
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+...+|+.||+|||.|.-|+.||+||++||.... |..
T Consensus 81 -----------------~d~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~------------g~~------------- 118 (253)
T COG1117 81 -----------------VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH------------GIK------------- 118 (253)
T ss_pred -----------------CCHHHHHHHheeeccCCCCCCchHHHHHHHhHHhh------------ccc-------------
Confidence 12235688899999999999999999999974221 110
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
. +.-++-++++|+.+.+.+... |..++.+..||||||||++|||||.-+|++|+||||||||||.+..+|.+
T Consensus 119 --~-~~ldeiVe~sLk~AaLWdEVK-----DrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEe 190 (253)
T COG1117 119 --D-KELDEIVESSLKKAALWDEVK-----DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEE 190 (253)
T ss_pred --h-HHHHHHHHHHHHHhHhHHHhH-----HHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHH
Confidence 0 112345667788887754322 22345567799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.+.+ +.-|+|+|||.+. ..+.+|+...+..|+.
T Consensus 191 Li~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~L 226 (253)
T COG1117 191 LITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGEL 226 (253)
T ss_pred HHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEE
Confidence 8875 6899999999985 5678999999988764
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=352.72 Aligned_cols=212 Identities=25% Similarity=0.341 Sum_probs=169.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|++++|+++|+ ++.+++|+||+|++||+++|+||||||||||+|+|.|+++|++|+|+++|.|...+.
T Consensus 7 ~~I~vr~v~~~fG--~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls-------- 76 (263)
T COG1127 7 PLIEVRGVTKSFG--DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLS-------- 76 (263)
T ss_pred ceEEEeeeeeecC--CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccC--------
Confidence 3699999999995 678999999999999999999999999999999999999999999999766543331
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...+...|+++|++||...||+. ||.||+.|+-.+.+. + |
T Consensus 77 ------------~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~~-----------l-p--------------- 117 (263)
T COG1127 77 ------------EEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTK-----------L-P--------------- 117 (263)
T ss_pred ------------HHHHHHHHhheeEEeeccccccccchhHhhheehHhhcc-----------C-C---------------
Confidence 11223567889999999999975 999999997432110 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...-++-+...|+.+|+.... ....+++||||++.|+|||||++-||+||++|||||+|||.+...+-+.++
T Consensus 118 ~~~i~~lv~~KL~~VGL~~~~--------~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~ 189 (263)
T COG1127 118 ESLIRELVLMKLELVGLRGAA--------ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIR 189 (263)
T ss_pred HHHHHHHHHHHHHhcCCChhh--------hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHH
Confidence 000112344556777664321 124578899999999999999999999999999999999999988877765
Q ss_pred h----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|.|+|+|||+++ +...|||+++|.+|+.
T Consensus 190 ~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 190 ELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKV 224 (263)
T ss_pred HHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEE
Confidence 3 5999999999975 5678999999999975
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=351.41 Aligned_cols=206 Identities=29% Similarity=0.400 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCCCc---cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKA---TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~---~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+++++|+++.|+. ++ ++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|. ....+
T Consensus 3 ~l~v~nl~~~y~~-~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~---~~~~~---- 74 (252)
T COG1124 3 LLSVRNLSIVYGG-GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGK---PLAPK---- 74 (252)
T ss_pred eEEEeceEEEecC-CcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCc---ccCcc----
Confidence 5899999999974 33 4999999999999999999999999999999999999999999999543 33100
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
...+..++.|-+|||||+-- ..||++-|.=+-. .
T Consensus 75 ---------------~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~------------~---------------- 111 (252)
T COG1124 75 ---------------KRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLR------------P---------------- 111 (252)
T ss_pred ---------------ccchhhccceeEEecCCccccCcchhHHHHHhhhhc------------c----------------
Confidence 01113467799999999732 1355544422110 0
Q ss_pred ccCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.+-.....++.++|+.+|+.. ++ ..++.+|||||+|||||||||.-+|++||||||||+||...++.|
T Consensus 112 --~~~~~~~~~i~~~L~~VgL~~~~l---------~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 112 --HGLSKSQQRIAELLDQVGLPPSFL---------DRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred --CCccHHHHHHHHHHHHcCCCHHHH---------hcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 001112345888999998853 22 345778999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.+.|.+ .+-|+|+|||++..+. .||||+||++|..
T Consensus 181 lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~i 220 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQI 220 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeE
Confidence 998753 5889999999998874 6999999999964
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=381.07 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+.+ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~------- 73 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLS------- 73 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC-------
Confidence 48999999999632 246999999999999999999999999999999999999999999999654432221
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
....+..|++|||+||++.+|. .|++||+.|+.... +.
T Consensus 74 -------------~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~------------~~---------------- 112 (343)
T TIGR02314 74 -------------NSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD------------NT---------------- 112 (343)
T ss_pred -------------HHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc------------CC----------------
Confidence 0111234677999999999995 69999998752100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.+..+ ..+.+|||||||||+|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 113 ~~~~~~~~v~e~l~~vgL~~~~~---------~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 113 PKDEIKRKVTELLALVGLGDKHD---------SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 00011245677888887764432 346789999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 184 ~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~i 219 (343)
T TIGR02314 184 KEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 389999999999876 67999999999975
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=359.20 Aligned_cols=210 Identities=26% Similarity=0.384 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 71 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLR--------- 71 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcC---------
Confidence 37899999999643346999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|. .|++||+.++.... +. ..
T Consensus 72 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~ 112 (216)
T TIGR00960 72 -----------GREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII------------GV----------------PP 112 (216)
T ss_pred -----------hhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc------------CC----------------CH
Confidence 0001123567999999999886 59999998742100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 183 (216)
T TIGR00960 113 RDANERVSAALEKVGLEGKAH---------ALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEE 183 (216)
T ss_pred HHHHHHHHHHHHHcCChhhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 011245667788777654322 23567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+|||+++.+ +.||++++|++|+
T Consensus 184 ~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 184 FNRRGTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 489999999998766 5799999999885
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=355.83 Aligned_cols=208 Identities=28% Similarity=0.410 Sum_probs=173.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++|++|.|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|+|.++|.+...
T Consensus 3 ~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~----------- 70 (235)
T COG1122 3 MIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS----------- 70 (235)
T ss_pred eEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc-----------
Confidence 58999999999864 689999999999999999999999999999999999999999999985433210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+...+|+.+|||+|+| .+|..||.|.++||....-..+
T Consensus 71 -----------~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~--------------------------- 112 (235)
T COG1122 71 -----------EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPR--------------------------- 112 (235)
T ss_pred -----------hhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcCCCH---------------------------
Confidence 012335678899999999 8899999999999854321100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..-++.+.++|+.+++.+..+ .++.+||||||||+|||.+|+.+|++||||||||+||+...+.+.+.++
T Consensus 113 -~e~~~rv~~~l~~vgl~~~~~---------r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 113 -EEIEERVAEALELVGLEELLD---------RPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred -HHHHHHHHHHHHHcCchhhcc---------CCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 011345778888888875543 3467899999999999999999999999999999999999999998886
Q ss_pred h---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++|||++.+ .+||++++|++|+.
T Consensus 183 ~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i 217 (235)
T COG1122 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKI 217 (235)
T ss_pred HHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEE
Confidence 5 3 78999999998765 67999999999976
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=351.86 Aligned_cols=210 Identities=27% Similarity=0.367 Sum_probs=172.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|++.++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 71 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKI---------- 71 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhC----------
Confidence 5899999999975445799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.++|++|++.+|+.|++||+.+...
T Consensus 72 -------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~----------------------------------- 103 (221)
T cd03244 72 -------------GLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE----------------------------------- 103 (221)
T ss_pred -------------CHHHHhhhEEEECCCCccccchHHHHhCcCCC-----------------------------------
Confidence 11234567999999999999999999975321
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++.....+ +.|+++. ++++..||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 104 ~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 104 YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 012344555566665544333 3577775 67888999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~ 215 (221)
T cd03244 184 EAFKDCTVLTIAHRLDTIIDSDRILVLDKGRV 215 (221)
T ss_pred HhcCCCEEEEEeCCHHHHhhCCEEEEEECCeE
Confidence 5 57899999999987777999999999864
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=355.91 Aligned_cols=210 Identities=24% Similarity=0.318 Sum_probs=165.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~----------- 69 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA----------- 69 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc-----------
Confidence 478999999974346799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|+||++.+|+.|+.||+.++......
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~-------------------------------- 105 (237)
T cd03252 70 ------------DPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSM-------------------------------- 105 (237)
T ss_pred ------------CHHHHhhcEEEEcCCchhccchHHHHhhccCCCCCH--------------------------------
Confidence 111235679999999999999999999875321111
Q ss_pred ChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+++.+.++..++...... +.|+++. ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 106 --~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (237)
T cd03252 106 --ERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD 183 (237)
T ss_pred --HHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 111222222222222211 1244443 556788999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i 214 (237)
T cd03252 184 ICAGRTVIIIAHRLSTVKNADRIIVMEKGRI 214 (237)
T ss_pred hcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 58999999999988778999999999864
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=354.16 Aligned_cols=209 Identities=27% Similarity=0.398 Sum_probs=163.9
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|++++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~-------- 72 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLS-------- 72 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcc--------
Confidence 46899999996421 57999999999999999999999999999999999999999999999654321110
Q ss_pred hhhcccccccchhcc-cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRS-MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~-~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
... ....++.++|++|++.+|.. |++||+.++.......
T Consensus 73 ------------~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~--------------------------- 113 (218)
T cd03255 73 ------------EKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVP--------------------------- 113 (218)
T ss_pred ------------hhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCC---------------------------
Confidence 000 00124579999999999976 9999998742110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.++++.++++... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (218)
T cd03255 114 -KKERRERAEELLERVGLGDRL---------NHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELL 183 (218)
T ss_pred -HHHHHHHHHHHHHHcCCchhh---------hcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 000123466777777665332 2345679999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++ .|+|+|+|||+++.+..||++++|++|+
T Consensus 184 ~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~ 217 (218)
T cd03255 184 RELNKEAGTTIVVVTHDPELAEYADRIIELRDGK 217 (218)
T ss_pred HHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCc
Confidence 64 3899999999998777999999999885
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=372.00 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=170.2
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+++.+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||.+....
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~--- 154 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK--- 154 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc---
Confidence 46899999999997545679999999999999999999999999999999999997 5799999965432110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......+|+.++||||+|++|++|++|||.|+........
T Consensus 155 ------------------~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~---------------------- 194 (329)
T PRK14257 155 ------------------KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGIND---------------------- 194 (329)
T ss_pred ------------------ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCCh----------------------
Confidence 0111245677999999999999999999987521100000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+.+.++++.+++.. ++++ .++++.+|||||||||+|||||+++|+|||||||||+||+.+...
T Consensus 195 -----~~~~~~~~~~~l~~~~L~~------~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~ 263 (329)
T PRK14257 195 -----RKILEKIVEKSLKSAALWD------EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAK 263 (329)
T ss_pred -----HHHHHHHHHHHHHHcCCcc------hhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 0000112455566665532 2233 367899999999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.+.|++ .++|+|+|||+++.+. .||||++|++|+.
T Consensus 264 i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i 302 (329)
T PRK14257 264 IEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWI 302 (329)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9998875 5799999999998764 5999999999865
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=354.13 Aligned_cols=209 Identities=25% Similarity=0.346 Sum_probs=169.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|+++.|+ ..++++||||+|+.||.+|+.||||||||||+++|+|+..|++|+|.++|.-.-|.+
T Consensus 2 ~i~i~~~~~~~~--~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~--------- 70 (345)
T COG1118 2 SIRINNVKKRFG--AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVS--------- 70 (345)
T ss_pred ceeehhhhhhcc--cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchh---------
Confidence 478899999996 467899999999999999999999999999999999999999999999654111221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......++||||+|+..|| +.||+|||+||-.-... ....
T Consensus 71 -------------~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~--------------------------~p~~ 111 (345)
T COG1118 71 -------------NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKE--------------------------RPSE 111 (345)
T ss_pred -------------ccchhhcceeEEEechhhcccchHHhhhhhccccccc--------------------------CCCh
Confidence 1112346799999999999 57999999998532100 0001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+..+.+.|+.++++.+.+ .++.+||||||||||+||||..+|++|+||||++|||+...+++.+.|++
T Consensus 112 ~~~r~rv~elL~lvqL~~la~---------ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~ 182 (345)
T COG1118 112 AEIRARVEELLRLVQLEGLAD---------RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182 (345)
T ss_pred hhHHHHHHHHHHHhcccchhh---------cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence 123356777788877765433 35788999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCc-chhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+++||||. +..+.||||++|++|+.
T Consensus 183 ~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~I 216 (345)
T COG1118 183 LHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216 (345)
T ss_pred HHHhhCceEEEEeCCHHHHHhhcceEEEecCCee
Confidence 599999999996 56789999999999963
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=354.87 Aligned_cols=209 Identities=25% Similarity=0.341 Sum_probs=163.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~---------- 68 (235)
T cd03261 1 IELRGLTKSFG--GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLS---------- 68 (235)
T ss_pred CeEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccC----------
Confidence 46899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.|+||||++.+|.. |++||+.++..... +. ...
T Consensus 69 ----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-----------~~----------------~~~ 111 (235)
T cd03261 69 ----------EAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT-----------RL----------------SEE 111 (235)
T ss_pred ----------hhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc-----------CC----------------CHH
Confidence 00011345679999999999985 99999987421000 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 182 (235)
T cd03261 112 EIREIVLEKLEAVGLRGAE---------DLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182 (235)
T ss_pred HHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677777665332 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 183 ~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i 215 (235)
T cd03261 183 KKELGLTSIMVTHDLDTAFAIADRIAVLYDGKI 215 (235)
T ss_pred HHhcCcEEEEEecCHHHHHHhcCEEEEEECCeE
Confidence 389999999998765 67999999999875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=348.49 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 71 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQL---------- 71 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHC----------
Confidence 4899999999964335799999999999999999999999999999999999999999999964322111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|..|+.||+.++....
T Consensus 72 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~--------------------------------- 105 (220)
T cd03245 72 -------------DPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLA--------------------------------- 105 (220)
T ss_pred -------------CHHHHHhhEEEeCCCCccccchHHHHhhcCCCCC---------------------------------
Confidence 1112345799999999999899999998753210
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...++.+.++.+++....+. +.|+++. .+...+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 106 -~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 106 -DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred -CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 11234455566666544333 3566665 55678899999999999999999999999999999999999999999987
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++....||++++|++|+.
T Consensus 185 ~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i 216 (220)
T cd03245 185 QLLGDKTLIIITHRPSLLDLVDRIIVMDSGRI 216 (220)
T ss_pred HhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeE
Confidence 5 35899999999987789999999999864
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=346.00 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=161.0
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~~~~l~~~~~~-~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~----------- 65 (205)
T cd03226 1 RIENISFSYKK-GTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK---PIK----------- 65 (205)
T ss_pred CcccEEEEeCC-cCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---Ehh-----------
Confidence 36899999963 257999999999999999999999999999999999999999999999543 221
Q ss_pred cccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ...++.++|++|++ .++..|++||+.++.... .
T Consensus 66 -----------~-~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~--------------------------------~ 101 (205)
T cd03226 66 -----------A-KERRKSIGYVMQDVDYQLFTDSVREELLLGLKEL--------------------------------D 101 (205)
T ss_pred -----------h-HHhhcceEEEecChhhhhhhccHHHHHhhhhhhc--------------------------------C
Confidence 0 12345799999997 467889999998742110 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (205)
T cd03226 102 AGNEQAETVLKDLDLYALKE---------RHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL 172 (205)
T ss_pred ccHHHHHHHHHHcCCchhcC---------CCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 11245667788877754332 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 173 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~ 203 (205)
T cd03226 173 AAQGKAVIVITHDYEFLAKVCDRVLLLANGA 203 (205)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 589999999998765 5799999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=348.98 Aligned_cols=203 Identities=30% Similarity=0.375 Sum_probs=161.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~----------- 67 (213)
T cd03259 1 LELKGLSKTYG--SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV----------- 67 (213)
T ss_pred CeeeeeEEEeC--CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC-----------
Confidence 46899999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++.++|+||++.+|. .|++||+.++....... ..
T Consensus 68 --------------~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 105 (213)
T cd03259 68 --------------PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVP----------------------------KA 105 (213)
T ss_pred --------------chhhccEEEEcCchhhccCCcHHHHHHhHHHHcCCC----------------------------HH
Confidence 112456999999999886 59999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03259 106 EIRARVRELLELVGLEGLL---------NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKEL 176 (213)
T ss_pred HHHHHHHHHHHHcCChhhh---------hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677777665332 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 177 ~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 177 QRELGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred HHHcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 38999999999875 578999999999864
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=366.39 Aligned_cols=224 Identities=19% Similarity=0.258 Sum_probs=167.4
Q ss_pred CcEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc-ccCCC
Q 040758 497 KLLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET-DAHTS 572 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i-~~~~~ 572 (788)
..|+++||+|+|++. ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+..+. ..+..
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 469999999999742 24699999999999999999999999999999999999999999999965432110 00000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+ .............+++.||||+|+| .+|+.|++|||.++........
T Consensus 100 ------~--~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~---------------------- 149 (320)
T PRK13631 100 ------I--TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKK---------------------- 149 (320)
T ss_pred ------c--ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCH----------------------
Confidence 0 0000000001123467799999998 6899999999988631100000
Q ss_pred hccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......+.+.++.++++ .. .+..+.+||||||||++|||||+++|++|||||||++||+.++..
T Consensus 150 ------~~~~~~~~~~l~~~gL~~~~---------~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~ 214 (320)
T PRK13631 150 ------SEAKKLAKFYLNKMGLDDSY---------LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHE 214 (320)
T ss_pred ------HHHHHHHHHHHHHcCCChhH---------hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHH
Confidence 00112345566666653 11 244567899999999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|.+ .|+|+|+|||+++.+ ++||+|++|++|+.
T Consensus 215 l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 215 MMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred HHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9998864 589999999999855 78999999999975
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=372.96 Aligned_cols=205 Identities=23% Similarity=0.311 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 71 (356)
T PRK11650 3 GLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNEL---------- 71 (356)
T ss_pred EEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 4899999999952 46799999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.||||||++.+|. .|++|||.|+...... ..
T Consensus 72 -------------~--~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------------------------~~ 108 (356)
T PRK11650 72 -------------E--PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGM----------------------------PK 108 (356)
T ss_pred -------------C--HHHCCEEEEeCCccccCCCCHHHHHHhHHhhcCC----------------------------CH
Confidence 1 12357999999999995 6999999986321000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++.+.+ ..+.+|||||||||+|||||+++|++||||||||+||+.+...+.+.|++
T Consensus 109 ~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~ 179 (356)
T PRK11650 109 AEIEERVAEAARILELEPLLD---------RKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQR 179 (356)
T ss_pred HHHHHHHHHHHHHcCChhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001245677888887765443 34567999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+|||+++ ....||+|++|++|+.
T Consensus 180 l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 180 LHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 3899999999975 5578999999999964
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=348.73 Aligned_cols=209 Identities=25% Similarity=0.371 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~--------- 70 (214)
T TIGR02673 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLR--------- 70 (214)
T ss_pred CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC---------
Confidence 3789999999952 457999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|++|++.+|. .|++||+.++.... +. ..
T Consensus 71 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------~~----------------~~ 111 (214)
T TIGR02673 71 -----------GRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR------------GK----------------KE 111 (214)
T ss_pred -----------HHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc------------CC----------------CH
Confidence 0011123567999999999986 59999997641100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 182 (214)
T TIGR02673 112 REIQRRVGAALRQVGLEHKAD---------AFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKR 182 (214)
T ss_pred HHHHHHHHHHHHHcCChhhhh---------CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011235667777777653322 23467999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 183 ~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 183 LNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 589999999998765 5799999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=348.54 Aligned_cols=205 Identities=29% Similarity=0.414 Sum_probs=159.9
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~------------ 68 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKL------------ 68 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccC------------
Confidence 36899999964225799999999999999999999999999999999999999999999964322111
Q ss_pred cccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++. +++.|++||+.++....... ..
T Consensus 69 -----------~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~~ 109 (211)
T cd03225 69 -----------SLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLP----------------------------EE 109 (211)
T ss_pred -----------CHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcCCC----------------------------HH
Confidence 11123467999999983 56789999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... ......||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+
T Consensus 110 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 180 (211)
T cd03225 110 EIEERVEEALELVGLEGLR---------DRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180 (211)
T ss_pred HHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123455667776664332 234577999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||+|++|++|+
T Consensus 181 ~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 181 KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 489999999998766 5699999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=347.64 Aligned_cols=215 Identities=24% Similarity=0.367 Sum_probs=165.8
Q ss_pred CCCCcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 494 KSQKLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
...++|+++|++++|++++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---- 79 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGK---PIS---- 79 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCC---chH----
Confidence 3457899999999997432 46999999999999999999999999999999999999999999999543 321
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..+....++.++|++|++.+|..|++||+.++.......++.+.++.
T Consensus 80 ----------------~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~----------------- 126 (226)
T cd03248 80 ----------------QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQK----------------- 126 (226)
T ss_pred ----------------HcCHHHHHhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHH-----------------
Confidence 00111234679999999999999999999875322111110000000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..+.+.++.+. .|+++. ...+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 127 --------~~~~~~l~~l~--------~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 190 (226)
T cd03248 127 --------AHAHSFISELA--------SGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQ 190 (226)
T ss_pred --------cCcHHHHHhcc--------ccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 01122333321 133433 4567889999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 732 EQIEA--AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+.|++ .++|+|++||+++.+..||+|++|++|+
T Consensus 191 ~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~ 225 (226)
T cd03248 191 QALYDWPERRTVLVIAHRLSTVERADQILVLDGGR 225 (226)
T ss_pred HHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCc
Confidence 98875 4689999999998877899999999875
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=349.31 Aligned_cols=210 Identities=25% Similarity=0.395 Sum_probs=168.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 70 (229)
T cd03254 2 EIEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDI---------- 70 (229)
T ss_pred eEEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHc----------
Confidence 4899999999963 34699999999999999999999999999999999999999999999954321111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|.+|++||+.++....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~~~~~~~~~~~--------------------------------- 104 (229)
T cd03254 71 -------------SRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNA--------------------------------- 104 (229)
T ss_pred -------------CHHHHhhhEEEecCCchhhhhHHHHHHhccCCCC---------------------------------
Confidence 1113456799999999999999999998753211
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...++.++++.+++....+++ .|+++. ..+..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.
T Consensus 105 -~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 105 -TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALE 183 (229)
T ss_pred -CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 112333344444444333332 355554 56678899999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~ 215 (229)
T cd03254 184 KLMKGRTSIIIAHRLSTIKNADKILVLDDGKI 215 (229)
T ss_pred HhcCCCEEEEEecCHHHHhhCCEEEEEeCCeE
Confidence 5 58999999999887778999999999875
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=348.48 Aligned_cols=216 Identities=23% Similarity=0.292 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+...+.
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--------- 70 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLK--------- 70 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCC---------
Confidence 3789999999952 457999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|++|++.++ ..|++||+.++....... .
T Consensus 71 -----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~ 111 (222)
T PRK10908 71 -----------NREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGAS----------------------------G 111 (222)
T ss_pred -----------hhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcCCC----------------------------H
Confidence 001112356799999999875 569999998742110000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (222)
T PRK10908 112 DDIRRRVSAALDKVGLLDKA---------KNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEE 182 (222)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence 00112455667776664322 233567999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSN 771 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~ 771 (788)
.++|+|+|||+++.+ ..||++++|++|+..++.++
T Consensus 183 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 221 (222)
T PRK10908 183 FNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGG 221 (222)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccCCCC
Confidence 589999999998766 57999999999987666554
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=348.61 Aligned_cols=210 Identities=26% Similarity=0.355 Sum_probs=163.1
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|+++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-------- 73 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS-------- 73 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcC--------
Confidence 78999999996422 46999999999999999999999999999999999999999999999654322110
Q ss_pred hhhcccccccchhcccccCc-ceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
......++ +.++|++|++.+|. .|++||+.++.......
T Consensus 74 ------------~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~--------------------------- 114 (221)
T TIGR02211 74 ------------SNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKS--------------------------- 114 (221)
T ss_pred ------------HhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcCCC---------------------------
Confidence 00000112 56999999999986 59999997632100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 115 -~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 115 -VKEAKERAYEMLEKVGLEHRI---------NHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred -HHHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 000123455677776664332 2335679999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 185 ~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i 219 (221)
T TIGR02211 185 LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQL 219 (221)
T ss_pred HHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEe
Confidence 63 38999999999988778999999998853
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=370.09 Aligned_cols=205 Identities=27% Similarity=0.367 Sum_probs=167.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 5 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 73 (351)
T PRK11432 5 NFVVLKNITKRFG--SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHR--------- 73 (351)
T ss_pred cEEEEEeEEEEEC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCC---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+ ..+++||||||++.+|. .|++|||.|+...... .
T Consensus 74 --------------~--~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~~----------------------------~ 109 (351)
T PRK11432 74 --------------S--IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGV----------------------------P 109 (351)
T ss_pred --------------C--HHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcCC----------------------------C
Confidence 1 12467999999999996 5999999986311000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++..+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 110 ~~~~~~~v~~~l~~~gl~~~~~---------r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~ 180 (351)
T PRK11432 110 KEERKQRVKEALELVDLAGFED---------RYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIR 180 (351)
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 0011245677888877764433 3367799999999999999999999999999999999999999998876
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 181 ~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 181 ELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred HHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 4 48999999999865 578999999999964
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=347.43 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=162.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------- 69 (214)
T cd03292 1 IEFINVTKTYPN-GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLR---------- 69 (214)
T ss_pred CEEEEEEEEeCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCC----------
Confidence 468999999964 357999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|++|++.+|. .|++||+.++....... ..
T Consensus 70 ----------~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~~ 111 (214)
T cd03292 70 ----------GRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVP----------------------------PR 111 (214)
T ss_pred ----------HHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcCCC----------------------------HH
Confidence 0001123567999999999997 49999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ ....+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 182 (214)
T cd03292 112 EIRKRVPAALELVGLSHKHR---------ALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKI 182 (214)
T ss_pred HHHHHHHHHHHHcCCHHHhh---------CChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence 01234566777766653322 23467999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ ..||++++|++|+
T Consensus 183 ~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 183 NKAGTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 589999999998766 4799999999875
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=324.17 Aligned_cols=201 Identities=27% Similarity=0.346 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|.+++|.|+|.. .==.++++|++||++||+||||||||||+++++||..|.+|+|+++|.|....
T Consensus 2 l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~----------- 66 (231)
T COG3840 2 LALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS----------- 66 (231)
T ss_pred ccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC-----------
Confidence 667899999953 22568999999999999999999999999999999999999999965543221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++-+++++||..||. -||.+||.+|.... ++ -..
T Consensus 67 --------------~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~-----------------Lk-----------L~a 104 (231)
T COG3840 67 --------------PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPG-----------------LK-----------LNA 104 (231)
T ss_pred --------------CcccCChhhhhhccccchhhhhhhhhcccCCcc-----------------cc-----------cCH
Confidence 123455999999999994 69999999975431 10 011
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH--
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-- 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~-- 735 (788)
.+.+.+..++.++|+..+.+++ +.+||||||||+|+||+|+++-|||+||||+|+|||.-..++...+.
T Consensus 105 ~~r~~v~~aa~~vGl~~~~~RL---------P~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l 175 (231)
T COG3840 105 EQREKVEAAAAQVGLAGFLKRL---------PGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQL 175 (231)
T ss_pred HHHHHHHHHHHHhChhhHhhhC---------ccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence 2346688889999987666654 56799999999999999999999999999999999999998877654
Q ss_pred --hcCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.+.|+++|||.++ ..+.+|+++++++|+.
T Consensus 176 ~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri 208 (231)
T COG3840 176 CDERKMTLLMVTHHPEDAARIADRVVFLDNGRI 208 (231)
T ss_pred HHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEE
Confidence 36999999999975 5678999999999975
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=360.06 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 498 LLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
.|+++||+++|++. .+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~--------- 74 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEE--------- 74 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 58999999999742 24699999999999999999999999999999999999999999999965432111
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++||+|+|. ++..|++|||.|+.......
T Consensus 75 --------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~--------------------------- 113 (279)
T PRK13650 75 --------------NVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIP--------------------------- 113 (279)
T ss_pred --------------cHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCCCC---------------------------
Confidence 11123567999999983 55679999998853110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.++++...+ ..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l 183 (279)
T PRK13650 114 -HEEMKERVNEALELVGMQDFKE---------REPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTI 183 (279)
T ss_pred -HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0001234667788877754332 335679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+..||+|++|++|+.
T Consensus 184 ~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i 218 (279)
T PRK13650 184 KGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218 (279)
T ss_pred HHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 53 38999999999887778999999999874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=348.37 Aligned_cols=210 Identities=25% Similarity=0.394 Sum_probs=164.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~----------- 69 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY----------- 69 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC-----------
Confidence 478999999974334799999999999999999999999999999999999999999999964321111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|++||+.++......
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~-------------------------------- 105 (234)
T cd03251 70 ------------TLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATR-------------------------------- 105 (234)
T ss_pred ------------CHHHHHhhEEEeCCCCeeccccHHHHhhccCCCCCH--------------------------------
Confidence 111235679999999999999999999885422110
Q ss_pred ChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.++.+.++..++....+.+ .|+++. +.++..||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 106 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~ 183 (234)
T cd03251 106 --EEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183 (234)
T ss_pred --HHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 1111222222222222211 244443 556788999999999999999999999999999999999999999999875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 214 (234)
T cd03251 184 LMKNRTTFVIAHRLSTIENADRIVVLEDGKI 214 (234)
T ss_pred hcCCCEEEEEecCHHHHhhCCEEEEecCCeE
Confidence 58999999999987777999999999875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=351.85 Aligned_cols=213 Identities=25% Similarity=0.287 Sum_probs=171.8
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
..+.|+++|++++|++.++.+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------- 88 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKL------- 88 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhC-------
Confidence 4568999999999975335799999999999999999999999999999999999999999999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++|++|++.+|++|++||+......
T Consensus 89 ----------------~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~------------------------------- 121 (257)
T cd03288 89 ----------------PLHTLRSRLSIILQDPILFSGSIRFNLDPECKC------------------------------- 121 (257)
T ss_pred ----------------CHHHHhhhEEEECCCCcccccHHHHhcCcCCCC-------------------------------
Confidence 111345679999999999999999998643110
Q ss_pred CCCCChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
..+++.++++.+++....+.+ .|+++. ++++.+||||||||++|||||+++|++|||||||++||+.++..+.+
T Consensus 122 ----~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~ 197 (257)
T cd03288 122 ----TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQK 197 (257)
T ss_pred ----CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHH
Confidence 012233334444443333332 467765 67788999999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+++ .+.|+|++||+++.+..||+|++|++|+.
T Consensus 198 ~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i 232 (257)
T cd03288 198 VVMTAFADRTVVTIAHRVSTILDADLVLVLSRGIL 232 (257)
T ss_pred HHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEE
Confidence 8875 58999999999988777999999999875
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=358.18 Aligned_cols=207 Identities=22% Similarity=0.363 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 72 (274)
T PRK13647 4 IIEVEDLHFRYKD-GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAE---------- 72 (274)
T ss_pred eEEEEEEEEEeCC-CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCC----------
Confidence 5899999999963 35699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.+|||||+| .++..|+.||+.|+.......
T Consensus 73 -------------~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------- 111 (274)
T PRK13647 73 -------------NEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLD---------------------------- 111 (274)
T ss_pred -------------CHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcCCC----------------------------
Confidence 1112345699999998 578889999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 112 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~ 182 (274)
T PRK13647 112 KDEVERRVEEALKAVRMWDFRD---------KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILD 182 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 0001234567777777754332 2356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 183 ~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 183 RLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRV 216 (274)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999999875 78999999999975
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=359.54 Aligned_cols=209 Identities=21% Similarity=0.317 Sum_probs=165.1
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||++.|++.. +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------- 75 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKK------- 75 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcC-------
Confidence 89999999997421 46999999999999999999999999999999999999999999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.||||||+| .+|+.|++||+.++.......
T Consensus 76 --------------~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~-------------------------- 115 (287)
T PRK13637 76 --------------VKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLS-------------------------- 115 (287)
T ss_pred --------------ccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCCCC--------------------------
Confidence 00112356799999998 577899999998742110000
Q ss_pred CCCCCChHHHHHHHHhcccc--cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG--YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. .. .+..+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 --~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~ 184 (287)
T PRK13637 116 --EEEIENRVKRAMNIVGLDYEDY---------KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEIL 184 (287)
T ss_pred --HHHHHHHHHHHHHHcCCCchhh---------ccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHH
Confidence 000123466778877764 21 23446789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 185 ~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i 223 (287)
T PRK13637 185 NKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKC 223 (287)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88854 389999999998765 68999999999875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-41 Score=348.67 Aligned_cols=211 Identities=24% Similarity=0.350 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~------- 77 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLS------- 77 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC-------
Confidence 599999999997422 46999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhcccccC-cceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
....... ++.++|+||++.+|.. |++||+.++......
T Consensus 78 -------------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--------------------------- 117 (233)
T PRK11629 78 -------------SAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK--------------------------- 117 (233)
T ss_pred -------------HHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcCC---------------------------
Confidence 0000011 2569999999999875 999999763110000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+++.++++.++++... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 118 -~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 187 (233)
T PRK11629 118 -KPAEINSRALEMLAAVGLEHRA---------NHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQL 187 (233)
T ss_pred -CHHHHHHHHHHHHHHcCCchhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0000123466777777665332 234567999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+..+|++++|++|+.
T Consensus 188 l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i 223 (233)
T PRK11629 188 LGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRL 223 (233)
T ss_pred HHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEE
Confidence 864 48999999999988877889999999864
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=347.37 Aligned_cols=209 Identities=26% Similarity=0.405 Sum_probs=166.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~----------- 68 (236)
T cd03253 1 IEFENVTFAYDP-GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV----------- 68 (236)
T ss_pred CEEEEEEEEeCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC-----------
Confidence 478999999963 35699999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+...+++.++|++|++.+|+.|++||+.++.....
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~--------------------------------- 103 (236)
T cd03253 69 ------------TLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDAT--------------------------------- 103 (236)
T ss_pred ------------CHHHHHhhEEEECCCChhhcchHHHHHhhcCCCCC---------------------------------
Confidence 11133567999999999999999999988642211
Q ss_pred ChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 659 STDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..++.+.++..++...... +.|+++. ..++..||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 104 -~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 182 (236)
T cd03253 104 -DEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD 182 (236)
T ss_pred -HHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1122233333333322222 2356664 566789999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.+..||++++|++|+.
T Consensus 183 ~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i 213 (236)
T cd03253 183 VSKGRTTIVIAHRLSTIVNADKIIVLKDGRI 213 (236)
T ss_pred hcCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 38999999999987777999999999875
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=344.66 Aligned_cols=207 Identities=24% Similarity=0.265 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|++.+ .++++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~------- 70 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGF---DVV------- 70 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCE---Ecc-------
Confidence 378999999997421 16999999999999999999999999999999999999999999999543 321
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. ....+++.++|+||++.+|.. |++||+.+.......
T Consensus 71 ----------~----~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 108 (218)
T cd03266 71 ----------K----EPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGL---------------------------- 108 (218)
T ss_pred ----------c----CHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcCC----------------------------
Confidence 0 011235679999999999985 999999763110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 109 ~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l 179 (218)
T cd03266 109 KGDELTARLEELADRLGMEELL---------DRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFI 179 (218)
T ss_pred CHHHHHHHHHHHHHHcCCHHHH---------hhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHH
Confidence 0000123456677777665332 2345679999999999999999999999999999999999999999988
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+.+. ..+||++++|++|+.
T Consensus 180 ~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 180 RQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 64 48999999999865 468999999999864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=368.72 Aligned_cols=204 Identities=28% Similarity=0.357 Sum_probs=167.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~---------- 71 (353)
T TIGR03265 4 YLSIDNIRKRFG--AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRL---------- 71 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC----------
Confidence 599999999996 35689999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.+|||||++.+|. .|++||+.|+...... ..
T Consensus 72 ---------------~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~~----------------------------~~ 108 (353)
T TIGR03265 72 ---------------PPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGM----------------------------GR 108 (353)
T ss_pred ---------------CHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcCC----------------------------CH
Confidence 112456999999999995 6999999986321000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.++++.+.+ ..+.+||||||||+||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 109 ~~~~~~~~~~l~~l~L~~~~~---------~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 179 (353)
T TIGR03265 109 AEVAERVAELLDLVGLPGSER---------KYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQ 179 (353)
T ss_pred HHHHHHHHHHHHHcCCCchhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011245677888887765433 34677999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|++||+.+. ...||+|++|++|+.
T Consensus 180 l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 180 LQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999865 578999999999964
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=368.43 Aligned_cols=211 Identities=24% Similarity=0.339 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~------- 73 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALS------- 73 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCC-------
Confidence 4889999999972 2357999999999999999999999999999999999999999999999654322210
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......+++||||||++.+|. .|++||+.++.... +.
T Consensus 74 -------------~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~------------~~---------------- 112 (343)
T PRK11153 74 -------------EKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA------------GT---------------- 112 (343)
T ss_pred -------------HHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc------------CC----------------
Confidence 0011123567999999999986 69999998742100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.+.++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 113 ~~~~~~~~~~~~l~~~gL~~~~---------~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 113 PKAEIKARVTELLELVGLSDKA---------DRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (343)
T ss_pred CHHHHHHHHHHHHHHcCCchhh---------hCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000123456677777665432 2345679999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 184 ~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i 219 (343)
T PRK11153 184 KDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219 (343)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 389999999998765 57999999999874
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=347.95 Aligned_cols=208 Identities=25% Similarity=0.339 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 69 (239)
T cd03296 2 SIEVRNVSKRFG--DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDV---------- 69 (239)
T ss_pred EEEEEeEEEEEC--CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964331111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.++|++|++.+|. .|++||+.++....... .. ...
T Consensus 70 -------------~--~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~------------~~------------~~~ 110 (239)
T cd03296 70 -------------P--VQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRS------------ER------------PPE 110 (239)
T ss_pred -------------C--ccccceEEEecCCcccCCCCHHHHHhhhhhhcccc------------cc------------CCH
Confidence 0 12456999999999986 59999998752110000 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (239)
T cd03296 111 AEIRAKVHELLKLVQLDWLA---------DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181 (239)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123455667777664332 234567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. ...||++++|++|+.
T Consensus 182 ~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 182 LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 38999999999875 567999999999875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=358.64 Aligned_cols=212 Identities=21% Similarity=0.274 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|+++||+|+|+.+. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------ 74 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTS------ 74 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 489999999997422 25999999999999999999999999999999999999999999999654321100
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.+|||+|+| .+|..|+.||+.|+.......
T Consensus 75 -------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~------------------------- 116 (288)
T PRK13643 75 -------------KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIP------------------------- 116 (288)
T ss_pred -------------ccccHHHHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCC-------------------------
Confidence 0001123456799999988 788899999998752110000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+++.++++.+++. ... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 117 ---~~~~~~~~~~~l~~~~L~~~~~---------~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~ 184 (288)
T PRK13643 117 ---KEKAEKIAAEKLEMVGLADEFW---------EKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMM 184 (288)
T ss_pred ---HHHHHHHHHHHHHHcCCChhhc---------cCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHH
Confidence 000123456777777763 222 2345779999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ .+||+|++|++|+.
T Consensus 185 ~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 185 QLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHI 222 (288)
T ss_pred HHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88754 589999999999865 68999999999864
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=336.59 Aligned_cols=195 Identities=25% Similarity=0.375 Sum_probs=158.6
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||+++|++.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997532 3699999999999999999999999999999999999999999999831
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+|+|++|++.+|+.|++||+.++... +
T Consensus 67 ----------------------~i~~~~q~~~l~~~t~~enl~~~~~~-~------------------------------ 93 (204)
T cd03250 67 ----------------------SIAYVSQEPWIQNGTIRENILFGKPF-D------------------------------ 93 (204)
T ss_pred ----------------------EEEEEecCchhccCcHHHHhccCCCc-C------------------------------
Confidence 39999999999999999999985321 0
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.++..++++.+++...... +.|+++. .+++.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.
T Consensus 94 ----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ 169 (204)
T cd03250 94 ----EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFEN 169 (204)
T ss_pred ----HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHH
Confidence 1122223333333322222 2456654 566788999999999999999999999999999999999999888774
Q ss_pred -HH---hcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 734 -IE---AAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 734 -L~---~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++ +.|+|+|++||+++.+..||++++|++|+
T Consensus 170 ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 170 CILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 44 24799999999998776799999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=345.41 Aligned_cols=206 Identities=22% Similarity=0.272 Sum_probs=162.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 67 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGY---SIR---------- 67 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE---ecc----------
Confidence 5789999999642267999999999999999999999999999999999999999999999543 321
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....++.++|++|++.+| ..|++||+.++....... ..
T Consensus 68 -------~----~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 108 (220)
T cd03263 68 -------T----DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLP----------------------------KS 108 (220)
T ss_pred -------c----chHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcCCC----------------------------HH
Confidence 0 0012356699999999998 579999997631100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 109 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 179 (220)
T cd03263 109 EIKEEVELLLRVLGLTDKA---------NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179 (220)
T ss_pred HHHHHHHHHHHHcCCHHHH---------hChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 0123455667776664322 223567999999999999999999999999999999999999999998875
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ +.||++++|++|+.
T Consensus 180 ~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 210 (220)
T cd03263 180 RKGRSIILTTHSMDEAEALCDRIAIMSDGKL 210 (220)
T ss_pred hcCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 468999999998766 57999999999864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=348.13 Aligned_cols=219 Identities=25% Similarity=0.369 Sum_probs=166.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 70 (243)
T TIGR02315 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR--------- 70 (243)
T ss_pred CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCC---------
Confidence 3789999999962 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|. .|++||+.++...... . .. .. .....
T Consensus 71 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~-~-~~-----~~-------------~~~~~ 119 (243)
T TIGR02315 71 -----------GKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKP-T-WR-----SL-------------LGRFS 119 (243)
T ss_pred -----------HHHHHHHHhheEEEcCCCcccccccHHHHHhhccccccc-c-hh-----hh-------------hcccc
Confidence 0001123567999999999886 5999999875321100 0 00 00 00000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 190 (243)
T TIGR02315 120 EEDKERALSALERVGLADKA---------YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190 (243)
T ss_pred HHHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11124566777777665332 234577999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|+|+|++||+++.+ ++||++++|++|+..
T Consensus 191 ~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~ 225 (243)
T TIGR02315 191 INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV 225 (243)
T ss_pred HHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 389999999998765 689999999998753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=343.86 Aligned_cols=201 Identities=26% Similarity=0.330 Sum_probs=160.5
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~-------- 69 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGE---PVT-------- 69 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ECc--------
Confidence 46899999996311 57999999999999999999999999999999999999999999999543 221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..++.++||||++.+|. .|++||+.++.... +. .
T Consensus 70 -----------------~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~ 104 (220)
T cd03293 70 -----------------GPGPDRGYVFQQDALLPWLTVLDNVALGLELQ------------GV----------------P 104 (220)
T ss_pred -----------------cccCcEEEEecccccccCCCHHHHHHHHHHHc------------CC----------------C
Confidence 12456999999999987 69999997642100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 105 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 175 (220)
T cd03293 105 KAEARERAEELLELVGLSGFEN---------AYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175 (220)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHH
Confidence 0001235667777776653322 2356799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEc--cCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRIS--TVD 764 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~--~g~ 764 (788)
+ .|+|+|+|||+++. .++||++++|+ +|+
T Consensus 176 ~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 4 38999999999875 57899999999 564
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=346.30 Aligned_cols=209 Identities=28% Similarity=0.335 Sum_probs=162.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW-----SDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~-----~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~----- 73 (227)
T cd03260 1 IELRDLNVYYG--DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD----- 73 (227)
T ss_pred CEEEEEEEEcC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcc-----
Confidence 47899999996 357999999999999999999999999999999999999 999999999644321110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
. .....++.++|+||++.+|..|++||+.++...... .
T Consensus 74 ---------------~-~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~------------~-------------- 111 (227)
T cd03260 74 ---------------V-DVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGI------------K-------------- 111 (227)
T ss_pred ---------------h-HHHHHHhhEEEEecCchhccccHHHHHHhHHHhcCC------------C--------------
Confidence 0 011235679999999999988999999874211000 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccC-CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEW-SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~-g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++.....+ .. +.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 112 -~~~~~~~~~~~~l~~~~l~~~~~~--------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 182 (227)
T cd03260 112 -LKEELDERVEEALRKAALWDEVKD--------RLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEE 182 (227)
T ss_pred -cHHHHHHHHHHHHHHcCCChHHhc--------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 000012345667777766533221 11 46799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ ..+|+|++||+++.+ ++||++++|++|+.
T Consensus 183 ~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 218 (227)
T cd03260 183 LIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRL 218 (227)
T ss_pred HHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 8875 238999999998764 68999999999864
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=341.34 Aligned_cols=199 Identities=28% Similarity=0.304 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 65 (208)
T cd03268 1 LKTNDLTKTYG--KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK---SYQ---------- 65 (208)
T ss_pred CEEEEEEEEEC--CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCC---ccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. . ...++.++|+||++.+|. .|++||+.++.... .
T Consensus 66 -------~---~--~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------------------------------~ 101 (208)
T cd03268 66 -------K---N--IEALRRIGALIEAPGFYPNLTARENLRLLARLL--------------------------------G 101 (208)
T ss_pred -------c---h--HHHHhhEEEecCCCccCccCcHHHHHHHHHHhc--------------------------------C
Confidence 0 0 123456999999998884 69999997642100 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 172 (208)
T cd03268 102 IRKKRIDEVLDVVGLKDSAK---------KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL 172 (208)
T ss_pred CcHHHHHHHHHHcCCHHHHh---------hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 02345566777776653322 33567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 173 ~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 173 RDQGITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998765 67999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=347.16 Aligned_cols=216 Identities=24% Similarity=0.312 Sum_probs=163.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 68 (236)
T cd03219 1 LEVRGLTKRFG--GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP---------- 68 (236)
T ss_pred CeeeeeEEEEC--CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCC----------
Confidence 46899999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....+..++|+||++.+|.. |++||+.++........+... .......
T Consensus 69 ------------~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~------------------~~~~~~~ 118 (236)
T cd03219 69 ------------PHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLA------------------RARREER 118 (236)
T ss_pred ------------HHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccc------------------cccccHH
Confidence 001123569999999999986 999999875321000000000 0000000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 119 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 189 (236)
T cd03219 119 EARERAEELLERVGLADLA---------DRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL 189 (236)
T ss_pred HHHHHHHHHHHHcCccchh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677776664322 334677999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||++++|++|+.
T Consensus 190 ~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 221 (236)
T cd03219 190 RERGITVLLVEHDMDVVMSLADRVTVLDQGRV 221 (236)
T ss_pred HHCCCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 589999999998765 67999999999864
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.31 Aligned_cols=202 Identities=29% Similarity=0.483 Sum_probs=159.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~---~~~----------- 64 (213)
T cd03235 1 EVEDLTVSYG--GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK---PLE----------- 64 (213)
T ss_pred CcccceeEEC--CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCc---cHH-----------
Confidence 3689999996 357999999999999999999999999999999999999999999999542 220
Q ss_pred cccccccchhcccccCcceEEEEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..++.++|++|++.+ +..|++||+.++...... +. . ...
T Consensus 65 --------------~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~--------------~~---------~-~~~ 106 (213)
T cd03235 65 --------------KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKG--------------LF---------R-RLS 106 (213)
T ss_pred --------------HHHhheEEeccccccccCCCCcHHHHHHhccccccc--------------cc---------c-CCC
Confidence 124569999999986 557999999875321000 00 0 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (213)
T cd03235 107 KADKAKVDEALERVGLSELAD---------RQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177 (213)
T ss_pred HHHHHHHHHHHHHcCCHHHHh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011235667777776653322 34567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+|||+++.+ +.||++++|++|.
T Consensus 178 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~ 209 (213)
T cd03235 178 LRREGMTILVVTHDLGLVLEYFDRVLLLNRTV 209 (213)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcE
Confidence 589999999998765 6799999998763
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=341.21 Aligned_cols=203 Identities=24% Similarity=0.351 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~----------- 67 (213)
T cd03301 1 VELENVTKRFG--NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL----------- 67 (213)
T ss_pred CEEEeeEEEEC--CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC-----------
Confidence 47899999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|. .|++||+.++....... ..
T Consensus 68 ------------~--~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 105 (213)
T cd03301 68 ------------P--PKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVP----------------------------KD 105 (213)
T ss_pred ------------C--cccceEEEEecChhhccCCCHHHHHHHHHHhcCCC----------------------------HH
Confidence 0 11356999999999985 59999997742100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (213)
T cd03301 106 EIDERVREVAELLQIEHLL---------DRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176 (213)
T ss_pred HHHHHHHHHHHHcCCHHHH---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123455667776664332 234567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||++++|++|+.
T Consensus 177 ~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 177 QQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 389999999998754 67999999998853
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=347.18 Aligned_cols=217 Identities=26% Similarity=0.380 Sum_probs=165.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 69 (241)
T cd03256 1 IEVENLSKTYPN-GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLK---------- 69 (241)
T ss_pred CEEeeEEEecCC-ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccC----------
Confidence 468999999963 257999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|+||++.+|. .|++||+.++..... .. . . . +......
T Consensus 70 ----------~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-~~-~--~---~-------------~~~~~~~ 119 (241)
T cd03256 70 ----------GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRR-ST-W--R---S-------------LFGLFPK 119 (241)
T ss_pred ----------HhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccc-hh-h--h---h-------------hcccCcH
Confidence 0001123567999999999886 699999987532100 00 0 0 0 0000001
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 190 (241)
T cd03256 120 EEKQRALAALERVGLLDKA---------YQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRI 190 (241)
T ss_pred HHHHHHHHHHHHcCChhhh---------CCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence 1224566777777665332 234677999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+. +||++++|++|+.
T Consensus 191 ~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i 223 (241)
T cd03256 191 NREEGITVIVSLHQVDLAREYADRIVGLKDGRI 223 (241)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3899999999987765 8999999999874
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=345.90 Aligned_cols=210 Identities=24% Similarity=0.384 Sum_probs=164.2
Q ss_pred EEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
|+++|+++.|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 70 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL---------- 70 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc----------
Confidence 4689999999642 34699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|..|++||+.++......
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~------------------------------- 106 (238)
T cd03249 71 -------------NLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATD------------------------------- 106 (238)
T ss_pred -------------CHHHHHhhEEEECCchhhhhhhHHHHhhccCCCCCH-------------------------------
Confidence 111234569999999999999999999875322110
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+++.+.++..++..+... +.|+++. .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 107 ---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~ 183 (238)
T cd03249 107 ---EEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALD 183 (238)
T ss_pred ---HHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 111222222222222111 1344543 55678899999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i 215 (238)
T cd03249 184 RAMKGRTTIVIAHRLSTIRNADLIAVLQNGQV 215 (238)
T ss_pred HhcCCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 5 58999999999987779999999999865
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.74 Aligned_cols=207 Identities=24% Similarity=0.362 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD----------- 67 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc-----------
Confidence 468999999963 5799999999999999999999999999999999999999999999964432100
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.......++.++|++|++.+|. .|++||+.++..... +.. ..
T Consensus 68 ----------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~-----------~~~----------------~~ 110 (213)
T cd03262 68 ----------KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK-----------GMS----------------KA 110 (213)
T ss_pred ----------chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc-----------CCC----------------HH
Confidence 0011123567999999999986 699999987521000 000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.++++... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 111 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 181 (213)
T cd03262 111 EAEERALELLEKVGLADKA---------DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDL 181 (213)
T ss_pred HHHHHHHHHHHHcCCHhHh---------hhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 0123455667766654322 234567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+++.+ +.||++++|++|+
T Consensus 182 ~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 182 AEEGMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 489999999998766 6799999999875
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=336.15 Aligned_cols=195 Identities=24% Similarity=0.380 Sum_probs=159.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.++++|++++|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--------- 75 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTI--------- 75 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHC---------
Confidence 46999999999974335799999999999999999999999999999999999999999999964432111
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.|+|++|++.+|++|++||+.+....
T Consensus 76 --------------~~~~~~~~i~~v~q~~~~~~~tv~~~l~~~~~~--------------------------------- 108 (207)
T cd03369 76 --------------PLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEY--------------------------------- 108 (207)
T ss_pred --------------CHHHHHhhEEEEecCCcccCccHHHHhcccCCC---------------------------------
Confidence 111235679999999999999999999653210
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+++.++++ ...++..|||||+||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 109 --~~~~~~~~l~----------------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 170 (207)
T cd03369 109 --SDEEIYGALR----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170 (207)
T ss_pred --CHHHHHHHhh----------------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 1122223332 1234567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.+..||++++|++|+.
T Consensus 171 ~~~~~tiii~th~~~~~~~~d~v~~l~~g~i 201 (207)
T cd03369 171 EFTNSTILTIAHRLRTIIDYDKILVMDAGEV 201 (207)
T ss_pred hcCCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 48999999999987767999999999864
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=356.90 Aligned_cols=212 Identities=15% Similarity=0.260 Sum_probs=164.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~------ 75 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKT------ 75 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 389999999996322 46999999999999999999999999999999999999999999999644321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.||||||+| .+|..|+.|||.++.......
T Consensus 76 -------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~------------------------- 117 (286)
T PRK13646 76 -------------KDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMN------------------------- 117 (286)
T ss_pred -------------ccchHHHHHhheEEEecChHhccchhhHHHHHHhhHHHcCCC-------------------------
Confidence 0001123466799999997 688889999998752110000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ---~~~~~~~~~~~l~~~gL~~~~---------~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~ 185 (286)
T PRK13646 118 ---LDEVKNYAHRLLMDLGFSRDV---------MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVM 185 (286)
T ss_pred ---HHHHHHHHHHHHHHcCCChhh---------hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHH
Confidence 000123455667766553 22 13456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 186 ~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i 224 (286)
T PRK13646 186 RLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSI 224 (286)
T ss_pred HHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88864 489999999998765 68999999999875
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=340.52 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=161.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+|+|+ ++++++|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~--~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~---~~~---------- 64 (211)
T cd03264 1 LQLENLTKRYG--KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQ---DVL---------- 64 (211)
T ss_pred CEEEEEEEEEC--CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCC---ccc----------
Confidence 57899999996 357999999999999 99999999999999999999999999999999543 321
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|++|++.+|.. |++||+.+..... +. ...
T Consensus 65 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------~~----------------~~~ 105 (211)
T cd03264 65 -------K---QP-QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK------------GI----------------PSK 105 (211)
T ss_pred -------c---ch-HHHHhheEEecCCCcccccCCHHHHHHHHHHHh------------CC----------------CHH
Confidence 0 01 1335679999999999975 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 176 (211)
T cd03264 106 EVKARVDEVLELVNLGDRAK---------KKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSEL 176 (211)
T ss_pred HHHHHHHHHHHHCCCHHHHh---------CchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777777653322 23567999999999999999999999999999999999999999999875
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ ++||++++|++|+.
T Consensus 177 ~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 177 GEDRIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred hCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 479999999999876 57999999999853
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=345.62 Aligned_cols=206 Identities=24% Similarity=0.347 Sum_probs=161.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------- 68 (232)
T cd03218 1 LRAENLSKRYG--KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLP---------- 68 (232)
T ss_pred CeEEEEEEEeC--CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCC----------
Confidence 47899999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++....... ..
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------~~ 108 (232)
T cd03218 69 ------------MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLS----------------------------KK 108 (232)
T ss_pred ------------HhHHHhccEEEecCCccccccCcHHHHHHHHHHhcCCC----------------------------HH
Confidence 001123569999999999986 9999997642100000 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.+.++.+++.... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 109 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 179 (232)
T cd03218 109 EREEKLEELLEEFHITHLR---------KSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL 179 (232)
T ss_pred HHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence 0112445666666554322 344577999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++ ..+.||++++|++|+.
T Consensus 180 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 211 (232)
T cd03218 180 KDRGIGVLITDHNVRETLSITDRAYIIYEGKV 211 (232)
T ss_pred HHCCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 5899999999985 5678999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-40 Score=367.64 Aligned_cols=210 Identities=25% Similarity=0.337 Sum_probs=169.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~L~~~nls~~y~--~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~---------- 70 (402)
T PRK09536 3 MIDVSDLSVEFG--DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEAL---------- 70 (402)
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcC----------
Confidence 589999999996 46799999999999999999999999999999999999999999999965432211
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+.+++.||||+|++.+ |+.|++||+.++...... ... ...
T Consensus 71 -------------~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~-----------------------~~~-~~~ 113 (402)
T PRK09536 71 -------------SARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRS-----------------------RFD-TWT 113 (402)
T ss_pred -------------CHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcc-----------------------ccc-CCC
Confidence 112345679999999988 567999999886421100 000 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+.+.+.++++.+++..+.++ ...+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 114 ~~~~~~v~~~le~vgl~~~~~~---------~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~ 184 (402)
T PRK09536 114 ETDRAAVERAMERTGVAQFADR---------PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRR 184 (402)
T ss_pred HHHHHHHHHHHHHcCCchhhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 1123457788888887654433 3567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+++|+++.+ ++|||+++|++|+.
T Consensus 185 l~~~g~TIIivsHdl~~~~~~adrii~l~~G~i 217 (402)
T PRK09536 185 LVDDGKTAVAAIHDLDLAARYCDELVLLADGRV 217 (402)
T ss_pred HHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 589999999999876 78999999999974
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=345.02 Aligned_cols=202 Identities=23% Similarity=0.285 Sum_probs=163.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 70 (241)
T PRK14250 3 EIEFKEVSYSSF--GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTI---------- 70 (241)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++.+|+.|++||+.++.....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~-------------------------------- 105 (241)
T PRK14250 71 -------------DVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKG-------------------------------- 105 (241)
T ss_pred -------------ChHHhhhcEEEEecCchhchhhHHHHHhcchhhcC--------------------------------
Confidence 11133567999999999999999999987421100
Q ss_pred CChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++. ... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 176 (241)
T PRK14250 106 EKNVDVEYYLSIVGLNKEYA---------TRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVK 176 (241)
T ss_pred cHHHHHHHHHHHcCCCHHHh---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0123455666666653 111 234667999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||+|++|++|+.
T Consensus 177 ~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 177 LKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred HHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEE
Confidence 389999999998765 57999999999875
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=327.82 Aligned_cols=169 Identities=34% Similarity=0.532 Sum_probs=147.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 69 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW----------- 69 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC-----------
Confidence 478999999975345699999999999999999999999999999999999999999999965432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|++||+
T Consensus 70 ------------~~~~~~~~i~~~~q~~~~~~~tv~~~l----------------------------------------- 96 (173)
T cd03246 70 ------------DPNELGDHVGYLPQDDELFSGSIAENI----------------------------------------- 96 (173)
T ss_pred ------------CHHHHHhheEEECCCCccccCcHHHHC-----------------------------------------
Confidence 111235679999999988877777664
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 97 ---------------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 143 (173)
T cd03246 97 ---------------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK 143 (173)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988864
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.|+|+|++||+.+.+..||++++|++|+
T Consensus 144 ~~~~tii~~sh~~~~~~~~d~v~~l~~G~ 172 (173)
T cd03246 144 AAGATRIVIAHRPETLASADRILVLEDGR 172 (173)
T ss_pred hCCCEEEEEeCCHHHHHhCCEEEEEECCC
Confidence 5899999999998878899999999885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=342.97 Aligned_cols=211 Identities=25% Similarity=0.362 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~------- 78 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMD------- 78 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCC-------
Confidence 699999999997422 35999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhccc-ccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSM-NRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~-~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.... ...++.++|++|++.++.. |+.||+.++.......
T Consensus 79 -------------~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~-------------------------- 119 (228)
T PRK10584 79 -------------EEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGES-------------------------- 119 (228)
T ss_pred -------------HHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCC--------------------------
Confidence 0000 0113569999999999875 9999997642100000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 120 --~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 188 (228)
T PRK10584 120 --SRQSRNGAKALLEQLGLGKRLD---------HLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADL 188 (228)
T ss_pred --HHHHHHHHHHHHHHcCCHhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHH
Confidence 0011245667777777653322 23567999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++....||++++|++|+.
T Consensus 189 l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i 224 (228)
T PRK10584 189 LFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQL 224 (228)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 853 38999999999987778999999998853
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=358.10 Aligned_cols=229 Identities=20% Similarity=0.290 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+...... .+-
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~--~~~ 79 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKK--TKE 79 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccc--ccc
Confidence 389999999997432 259999999999999999999999999999999999999999999997544211000 000
Q ss_pred chhhhcccccccc---hhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 575 DSLEVNSQNMNGE---LTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 575 ~~~~~~~~~~~~~---~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
-...+.+.++... ........++.||||||+| .+|..|++|||.|+.......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~---------------------- 137 (305)
T PRK13651 80 KEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS---------------------- 137 (305)
T ss_pred ccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------------------
Confidence 0000000000000 0001123457799999986 678889999998852110000
Q ss_pred hhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
.....+++.++++.+++. ... ...+.+||||||||++|||||+.+|++|||||||++||+.+..
T Consensus 138 ------~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 138 ------KEEAKKRAAKYIELVGLDESYL---------QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred ------HHHHHHHHHHHHHHcCCChhhh---------hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001123466778877764 222 2346789999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++ .|+|+|+|||+++. .++||||++|++|+.
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i 243 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI 243 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE
Confidence 99988864 58999999999875 578999999999864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=365.73 Aligned_cols=205 Identities=29% Similarity=0.377 Sum_probs=166.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC--ceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR--GKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~--G~I~~~~~~~~~i~~~~~~~ 574 (788)
+.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+..+.
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~------- 74 (362)
T TIGR03258 4 GGIRIDHLRVAYG--ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHA------- 74 (362)
T ss_pred eEEEEEEEEEEEC--CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCC-------
Confidence 4699999999996 3579999999999999999999999999999999999999999 9999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
+ ..++.||||+|++.+|. .|++|||.|+......
T Consensus 75 ----------------~--~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~--------------------------- 109 (362)
T TIGR03258 75 ----------------P--PHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKM--------------------------- 109 (362)
T ss_pred ----------------C--HHHCCEEEEECCcccCCCCcHHHHHHHHHHHcCC---------------------------
Confidence 0 12356999999999996 4999999986211000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......++.++++.++++.+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.
T Consensus 110 -~~~~~~~~v~~~l~~~gL~~~~~---------~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 179 (362)
T TIGR03258 110 -PKADIAERVADALKLVGLGDAAA---------HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREE 179 (362)
T ss_pred -CHHHHHHHHHHHHHhcCCCchhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHH
Confidence 00011235677788887765443 34667999999999999999999999999999999999999999988
Q ss_pred HHh---c--CCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 734 IEA---A--GITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~--g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|++ + |+|+|+|||+++. ...||+|++|++|+.
T Consensus 180 l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i 217 (362)
T TIGR03258 180 IAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRL 217 (362)
T ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 753 3 7999999999865 578999999999964
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=346.83 Aligned_cols=196 Identities=27% Similarity=0.353 Sum_probs=162.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 11 ~~l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~---~~--------- 76 (257)
T PRK11247 11 TPLLLNAVSKRYG--ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA---PL--------- 76 (257)
T ss_pred CcEEEEEEEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE---EH---------
Confidence 3599999999996 357999999999999999999999999999999999999999999998432 21
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++.++|++|++.+|. .|++||+.++...
T Consensus 77 ----------------~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~-------------------------------- 108 (257)
T PRK11247 77 ----------------AEAREDTRLMFQDARLLPWKKVIDNVGLGLKG-------------------------------- 108 (257)
T ss_pred ----------------HHhhCceEEEecCccCCCCCcHHHHHHhcccc--------------------------------
Confidence 123456999999999987 6999999875210
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 109 --~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 177 (257)
T PRK11247 109 --QWRDAALQALAAVGLADRA---------NEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177 (257)
T ss_pred --hHHHHHHHHHHHcCChhHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0123455667777664322 23467799999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ +.||+|++|++|+.
T Consensus 178 ~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i 212 (257)
T PRK11247 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212 (257)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999998764 68999999999875
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=346.18 Aligned_cols=211 Identities=22% Similarity=0.337 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------- 73 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLS------- 73 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCC-------
Confidence 378999999996421 27999999999999999999999999999999999999999999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......++.++|+||++.+|. .|++||+.++.......
T Consensus 74 -------------~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~--------------------------- 113 (233)
T cd03258 74 -------------GKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVP--------------------------- 113 (233)
T ss_pred -------------HHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcCCC---------------------------
Confidence 0001122467999999999997 59999997641100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 114 -KAEIEERVLELLELVGLEDKAD---------AYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALL 183 (233)
T ss_pred -HHHHHHHHHHHHHHCCChhhhh---------cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHH
Confidence 0001234566777776653322 345679999999999999999999999999999999999999999888
Q ss_pred Hh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ . |+|+|++||+++.+ ..||++++|++|+.
T Consensus 184 ~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 219 (233)
T cd03258 184 RDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEV 219 (233)
T ss_pred HHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 3 89999999998765 67999999999864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=361.93 Aligned_cols=208 Identities=28% Similarity=0.361 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~L~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~---------- 69 (353)
T PRK10851 2 SIEIANIKKSFG--RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRL---------- 69 (353)
T ss_pred EEEEEEEEEEeC--CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...++.|+||||++.+|. .|++||+.|+...... ......
T Consensus 70 ---------------~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~------------------------~~~~~~ 110 (353)
T PRK10851 70 ---------------HARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPR------------------------RERPNA 110 (353)
T ss_pred ---------------CHHHCCEEEEecCcccCCCCcHHHHHHhhhhhccc------------------------ccCCCH
Confidence 112456999999999996 5999999986321000 000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~ 181 (353)
T PRK10851 111 AAIKAKVTQLLEMVQLAHLAD---------RYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181 (353)
T ss_pred HHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 011245667788877754332 34678999999999999999999999999999999999999999888864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||+|++|++|+.
T Consensus 182 l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 182 LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999865 578999999999964
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=363.90 Aligned_cols=205 Identities=27% Similarity=0.393 Sum_probs=166.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 13 ~~L~l~~l~~~~~--~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~--------- 81 (375)
T PRK09452 13 PLVELRGISKSFD--GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHV--------- 81 (375)
T ss_pred ceEEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++.||||||++.+|. .|++|||.|+...... .
T Consensus 82 ----------------~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~----------------------------~ 117 (375)
T PRK09452 82 ----------------PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT----------------------------P 117 (375)
T ss_pred ----------------CHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcCC----------------------------C
Confidence 112457999999999995 5999999986321000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 118 ~~~~~~~~~~~l~~~~l~~~~~---------~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~ 188 (375)
T PRK09452 118 AAEITPRVMEALRMVQLEEFAQ---------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELK 188 (375)
T ss_pred HHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 0001235667788777764433 3456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 189 ~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 189 ALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred HHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 48999999999865 578999999999964
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=357.06 Aligned_cols=206 Identities=25% Similarity=0.316 Sum_probs=164.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ +..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 6 ~~i~i~~l~k~~~--~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~---~~-------- 72 (306)
T PRK13537 6 APIDFRNVEKRYG--DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEP---VP-------- 72 (306)
T ss_pred ceEEEEeEEEEEC--CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEe---cc--------
Confidence 3699999999996 4579999999999999999999999999999999999999999999996443 31
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .+ ...++.||||||++.+|. .|++||+.|.... .+. .
T Consensus 73 ---------~---~~-~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~------------~~~----------------~ 111 (306)
T PRK13537 73 ---------S---RA-RHARQRVGVVPQFDNLDPDFTVRENLLVFGRY------------FGL----------------S 111 (306)
T ss_pred ---------c---ch-HHHHhcEEEEeccCcCCCCCcHHHHHHHHHHH------------cCC----------------C
Confidence 0 01 123567999999999986 5999999752100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
......++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 112 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~ 182 (306)
T PRK13537 112 AAAARALVPPLLEFAKLENKA---------DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182 (306)
T ss_pred HHHHHHHHHHHHHHcCCchHh---------cCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 000113455667766664322 23356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 183 ~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i 216 (306)
T PRK13537 183 SLLARGKTILLTTHFMEEAERLCDRLCVIEEGRK 216 (306)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998765 68999999999974
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=355.97 Aligned_cols=211 Identities=19% Similarity=0.283 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 499 LDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 499 I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
|+++||+++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~------- 75 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGK------- 75 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcccc-------
Confidence 89999999997422 46999999999999999999999999999999999999999999999654321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
........++.||||||+| .+|+.|+.|||.|+.... +..
T Consensus 76 ------------~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~------------~~~-------------- 117 (290)
T PRK13634 76 ------------KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF------------GVS-------------- 117 (290)
T ss_pred ------------ccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc------------CCC--------------
Confidence 0001113456799999997 688889999998752110 000
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+.+.++++.+++. ... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 118 --~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~ 186 (290)
T PRK13634 118 --EEDAKQKAREMIELVGLPEELL---------ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMME 186 (290)
T ss_pred --HHHHHHHHHHHHHHCCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 000113456677777764 222 23467799999999999999999999999999999999999999998
Q ss_pred HHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|.|+|+|||+++.+ ++||||++|++|+.
T Consensus 187 ~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i 224 (290)
T PRK13634 187 MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTV 224 (290)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8854 389999999998765 68999999999874
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=341.27 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=159.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~---------- 68 (222)
T cd03224 1 LEVENLNAGYG--KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP---------- 68 (222)
T ss_pred CEEeeEEeecC--CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCC----------
Confidence 57899999996 357999999999999999999999999999999999999999999999643321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++...... .
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------------------------------~ 106 (222)
T cd03224 69 ------------PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRR------------------------------A 106 (222)
T ss_pred ------------HHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcCc------------------------------h
Confidence 001124569999999999986 999999875321000 0
Q ss_pred CChHHHHHHHHhc-ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDV-KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~-~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+ +++.. ....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~l~~~~~l~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 177 (222)
T cd03224 107 KRKARLERVYELFPRLKER---------RKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRE 177 (222)
T ss_pred hHHHHHHHHHHHHHhhhhh---------hhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence 0112233444443 12211 1344667999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 178 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (222)
T cd03224 178 LRDEGVTILLVEQNARFALEIADRAYVLERGRV 210 (222)
T ss_pred HHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeE
Confidence 58999999999875 578999999999864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=365.88 Aligned_cols=204 Identities=25% Similarity=0.342 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~i~~l~~~~~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~---------- 70 (369)
T PRK11000 3 SVTLRNVTKAYG--DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDV---------- 70 (369)
T ss_pred EEEEEEEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..++.||||+|++.+|. .|++||+.|+...... ..
T Consensus 71 -------------~--~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~~----------------------------~~ 107 (369)
T PRK11000 71 -------------P--PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------------------------KK 107 (369)
T ss_pred -------------C--HhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcCC----------------------------CH
Confidence 0 12356999999999996 5999999885311000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+.+.+.+.|++
T Consensus 108 ~~~~~~~~~~l~~lgL~~~~~---------~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~ 178 (369)
T PRK11000 108 EEINQRVNQVAEVLQLAHLLD---------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (369)
T ss_pred HHHHHHHHHHHHHcCChhhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001235667788777754332 33567999999999999999999999999999999999999999888754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||+|++|++|+.
T Consensus 179 l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred HHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999865 568999999999964
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=322.81 Aligned_cols=163 Identities=56% Similarity=0.967 Sum_probs=147.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 1 i~~~~~~~~~~~-~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~----------------- 62 (166)
T cd03223 1 IELENLSLATPD-GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPE----------------- 62 (166)
T ss_pred CEEEEEEEEcCC-CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----------------
Confidence 468999999964 35799999999999999999999999999999999999999999999831
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
++.++|++|++.+++.|++||+.++
T Consensus 63 -----------------~~~i~~~~q~~~~~~~tv~~nl~~~-------------------------------------- 87 (166)
T cd03223 63 -----------------GEDLLFLPQRPYLPLGTLREQLIYP-------------------------------------- 87 (166)
T ss_pred -----------------CceEEEECCCCccccccHHHHhhcc--------------------------------------
Confidence 1459999999999989999999763
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAG 738 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g 738 (788)
+...||||||||++|||||+++|+++||||||++||+++.+.+.+.+++.+
T Consensus 88 -----------------------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~ 138 (166)
T cd03223 88 -----------------------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG 138 (166)
T ss_pred -----------------------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhC
Confidence 013499999999999999999999999999999999999999999998878
Q ss_pred CEEEEEecCcchhhcCCEEEEEccC
Q 040758 739 ITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
+|+|++||+.+....||++++|+++
T Consensus 139 ~tiiivsh~~~~~~~~d~i~~l~~~ 163 (166)
T cd03223 139 ITVISVGHRPSLWKFHDRVLDLDGE 163 (166)
T ss_pred CEEEEEeCChhHHhhCCEEEEEcCC
Confidence 9999999999888899999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=352.45 Aligned_cols=208 Identities=25% Similarity=0.360 Sum_probs=166.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~---------- 74 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEE---------- 74 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC----------
Confidence 5999999999964345799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.|+|++|++ .++..|+.|||.++.......
T Consensus 75 -------------~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 113 (279)
T PRK13635 75 -------------TVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP---------------------------- 113 (279)
T ss_pred -------------cHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCCCC----------------------------
Confidence 1112345699999998 456789999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 184 (279)
T PRK13635 114 REEMVERVDQALRQVGMEDFLN---------REPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVR 184 (279)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001234667777777654333 3356799999999999999999999999999999999999999999886
Q ss_pred h---c-CCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++||+++.+..||+|++|++|+.
T Consensus 185 ~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i 218 (279)
T PRK13635 185 QLKEQKGITVLSITHDLDEAAQADRVIVMNKGEI 218 (279)
T ss_pred HHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 4 3 8999999999887777999999999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=343.82 Aligned_cols=205 Identities=22% Similarity=0.325 Sum_probs=162.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~---------- 68 (236)
T TIGR03864 1 ALEVAGLSFAYG--ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA---------- 68 (236)
T ss_pred CEEEEeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC----------
Confidence 378999999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+. ..++.++|++|++.++ ..|++||+.++....... .
T Consensus 69 -------------~~-~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~----------------------------~ 106 (236)
T TIGR03864 69 -------------PR-AALARLGVVFQQPTLDLDLSVRQNLRYHAALHGLS----------------------------R 106 (236)
T ss_pred -------------Ch-hhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcCCC----------------------------H
Confidence 11 1234699999999885 579999997642100000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... ...+.+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 107 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 177 (236)
T TIGR03864 107 AEARERIAALLARLGLAERA---------DDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRA 177 (236)
T ss_pred HHHHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 00123455667766654322 344567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+..||++++|++|+.
T Consensus 178 ~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i 210 (236)
T TIGR03864 178 LCRDQGLSVLWATHLVDEIEADDRLVVLHRGRV 210 (236)
T ss_pred HHHhCCCEEEEEecChhhHhhCCEEEEEeCCeE
Confidence 38999999999987777999999999864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=340.38 Aligned_cols=204 Identities=24% Similarity=0.292 Sum_probs=162.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~---~~~---------- 65 (220)
T cd03265 1 IEVENLVKKYG--DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGH---DVV---------- 65 (220)
T ss_pred CEEEEEEEEEC--CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ecC----------
Confidence 57899999996 357999999999999999999999999999999999999999999999643 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|+||++.++.. |++||+.++... .+. ...
T Consensus 66 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------------~~~----------------~~~ 106 (220)
T cd03265 66 -------R---EP-REVRRRIGIVFQDLSVDDELTGWENLYIHARL------------YGV----------------PGA 106 (220)
T ss_pred -------c---Ch-HHHhhcEEEecCCccccccCcHHHHHHHHHHH------------cCC----------------CHH
Confidence 0 00 1234579999999998875 999999763100 000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 107 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (220)
T cd03265 107 ERRERIDELLDFVGLLEAAD---------RLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKL 177 (220)
T ss_pred HHHHHHHHHHHHcCCHHHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence 11235667788777654322 23567999999999999999999999999999999999999999988864
Q ss_pred --c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+++.+ .+||++++|++|+.
T Consensus 178 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 210 (220)
T cd03265 178 KEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRI 210 (220)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 3 89999999998765 67999999999864
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=351.28 Aligned_cols=208 Identities=23% Similarity=0.341 Sum_probs=165.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 76 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKE---------- 76 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcC----------
Confidence 6999999999974356799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.++|++|++ .++..|++||+.++.......
T Consensus 77 -------------~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 115 (271)
T PRK13632 77 -------------NLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVP---------------------------- 115 (271)
T ss_pred -------------CHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcCCC----------------------------
Confidence 1113456799999998 455679999998742100000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~ 186 (271)
T PRK13632 116 PKKMKDIIDDLAKKVGMEDYLD---------KEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMV 186 (271)
T ss_pred HHHHHHHHHHHHHHcCCHHHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001123566777776654322 3456799999999999999999999999999999999999999999886
Q ss_pred h---c-CCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ . ++|+|++||+++.+..||++++|++|+.
T Consensus 187 ~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i 220 (271)
T PRK13632 187 DLRKTRKKTLISITHDMDEAILADKVIVFSEGKL 220 (271)
T ss_pred HHHHhcCcEEEEEEechhHHhhCCEEEEEECCEE
Confidence 4 3 5899999999887778999999999874
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=351.79 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ml~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 69 (274)
T PRK13644 1 MIRLENVSYSYPD-GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF---------- 69 (274)
T ss_pred CEEEEEEEEEcCC-CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc----------
Confidence 3789999999963 45699999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
......++.++|++|+|. ++..|+.||+.++.......
T Consensus 70 ------------~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~---------------------------- 109 (274)
T PRK13644 70 ------------SKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLP---------------------------- 109 (274)
T ss_pred ------------ccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcCCC----------------------------
Confidence 001123467999999985 56789999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 110 ~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~ 180 (274)
T PRK13644 110 PIEIRKRVDRALAEIGLEKYR---------HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIK 180 (274)
T ss_pred HHHHHHHHHHHHHHCCCHHHh---------cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456667777665432 23456799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 181 ~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i 213 (274)
T PRK13644 181 KLHEKGKTIVYITHNLEELHDADRIIVMDRGKI 213 (274)
T ss_pred HHHhCCCEEEEEecCHHHHhhCCEEEEEECCEE
Confidence 4 58999999999988788999999999874
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=335.70 Aligned_cols=209 Identities=21% Similarity=0.282 Sum_probs=161.0
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
.+.|+.|+|+. ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 ~~~~~~~~~~~-~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~----------- 69 (218)
T cd03290 2 QVTNGYFSWGS-GLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPS----------- 69 (218)
T ss_pred eeeeeEEecCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccc-----------
Confidence 46789999975 467999999999999999999999999999999999999999999999644321110
Q ss_pred cccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
. .......++.++|++|++.+|+.|++||+.++... .
T Consensus 70 ----~----~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~-~---------------------------------- 106 (218)
T cd03290 70 ----F----EATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-N---------------------------------- 106 (218)
T ss_pred ----c----cccchhhcceEEEEcCCCccccccHHHHHhhcCcC-C----------------------------------
Confidence 0 00011235679999999999999999999875311 0
Q ss_pred hHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH--HH-
Q 040758 660 TDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QI- 734 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~--~L- 734 (788)
.++..++++.+++....+ .+.|+++. ..+...||||||||++|||||+.+|++|||||||++||+.+...+.+ .+
T Consensus 107 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~ 186 (218)
T cd03290 107 KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILK 186 (218)
T ss_pred HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence 111223333333332221 12455554 55678899999999999999999999999999999999999988776 33
Q ss_pred --HhcCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 735 --EAAGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 735 --~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
++.|+|+|++||+.+.+..||++++|++|
T Consensus 187 ~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G 217 (218)
T cd03290 187 FLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217 (218)
T ss_pred HHhcCCCEEEEEeCChHHHhhCCEEEEecCC
Confidence 34589999999999888889999999987
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-40 Score=339.89 Aligned_cols=201 Identities=28% Similarity=0.418 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~i~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~---------- 74 (225)
T PRK10247 7 LLQLQNVGYLAG--DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTL---------- 74 (225)
T ss_pred eEEEeccEEeeC--CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcC----------
Confidence 699999999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.+|+.|++||+.++.... ...
T Consensus 75 -------------~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~------------------------------~~~ 111 (225)
T PRK10247 75 -------------KPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIR------------------------------NQQ 111 (225)
T ss_pred -------------CHHHHHhccEEEecccccccccHHHHHHhHHhhc------------------------------CCC
Confidence 0112346799999999999899999997631000 000
Q ss_pred CChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++.. . ....+.+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~~~l~~~~l~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (225)
T PRK10247 112 PDPAIFLDDLERFALPDTI---------LTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHR 182 (225)
T ss_pred hHHHHHHHHHHHcCCChHH---------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 11234556677766531 1 1344678999999999999999999999999999999999999999888764
Q ss_pred ----cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 ----AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|+|+|++||+++.++.||++++|++
T Consensus 183 ~~~~~~~tvii~sh~~~~~~~~d~i~~l~~ 212 (225)
T PRK10247 183 YVREQNIAVLWVTHDKDEINHADKVITLQP 212 (225)
T ss_pred HHHhcCCEEEEEECChHHHHhCCEEEEEec
Confidence 38999999999988788999999964
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=345.31 Aligned_cols=213 Identities=26% Similarity=0.317 Sum_probs=165.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.....
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~---- 74 (247)
T TIGR00972 1 AIEIENLNLFYG--EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK---- 74 (247)
T ss_pred CEEEEEEEEEEC--CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccc----
Confidence 378999999996 356999999999999999999999999999999999999998 999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|+.||+.++.... +..
T Consensus 75 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~------------~~~------------- 112 (247)
T TIGR00972 75 -----------------IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLH------------GIK------------- 112 (247)
T ss_pred -----------------cchHHHHhheEEEecCcccCCCCHHHHHHhHHHhc------------CCC-------------
Confidence 01113356799999999999999999997642100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +.....+.+||||||||++|||||+++|+++||||||++||+.+...+.+
T Consensus 113 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 185 (247)
T TIGR00972 113 --DKKELDEIVEESLKKAALWDEVK-----DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185 (247)
T ss_pred --CHHHHHHHHHHHHHHcCCCcchh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001234566777777652110 11234467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ +++|+|+|||+++.+ ..||++++|++|+.
T Consensus 186 ~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 186 LIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred HHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8875 468999999999755 68999999999875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=361.89 Aligned_cols=206 Identities=25% Similarity=0.322 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 17 ~~~l~l~~v~~~~~--~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~-------- 86 (377)
T PRK11607 17 TPLLEIRNLTKSFD--GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHV-------- 86 (377)
T ss_pred CceEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCC--------
Confidence 34699999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...++.||||||++.+|. .|+.|||.|+.......
T Consensus 87 -----------------~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~--------------------------- 122 (377)
T PRK11607 87 -----------------PPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLP--------------------------- 122 (377)
T ss_pred -----------------CHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC---------------------------
Confidence 123467999999999996 59999999863210000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.+.++.+++..+.+ ..+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|
T Consensus 123 -~~~~~~~v~~~l~~l~L~~~~~---------~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 192 (377)
T PRK11607 123 -KAEIASRVNEMLGLVHMQEFAK---------RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192 (377)
T ss_pred -HHHHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0001235667788777764433 345679999999999999999999999999999999999999888765
Q ss_pred H----hcCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 E----AAGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~----~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ +.|.|+|++||+.+. ...||+|++|++|+.
T Consensus 193 ~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred HHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 4 358999999999865 578999999999964
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=344.91 Aligned_cols=206 Identities=24% Similarity=0.305 Sum_probs=163.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 68 (242)
T cd03295 1 IEFENVTKRYGG-GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQ----------- 68 (242)
T ss_pred CEEEEEEEEeCC-cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcC-----------
Confidence 468999999963 25799999999999999999999999999999999999999999999965432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|+||++.+|. .|++||+.++...... ...
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------------------~~~ 108 (242)
T cd03295 69 ------------DPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKW----------------------------PKE 108 (242)
T ss_pred ------------ChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcCC----------------------------CHH
Confidence 11123567999999999996 6999999764210000 000
Q ss_pred CChHHHHHHHHhccccc--ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGY--ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~--~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++.. . ....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 109 ~~~~~~~~~l~~l~l~~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~ 179 (242)
T cd03295 109 KIRERADELLALVGLDPAEF---------ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFK 179 (242)
T ss_pred HHHHHHHHHHHHcCCCcHHH---------HhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHH
Confidence 01234567777776652 1 133467799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++. ...||+|++|++|+.
T Consensus 180 ~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i 214 (242)
T cd03295 180 RLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEI 214 (242)
T ss_pred HHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 38999999999875 578999999999875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=336.43 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~~~~l~~~~~--~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~~~---------- 65 (210)
T cd03269 1 LEVENVTKRFG--RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGK---PLD---------- 65 (210)
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCC---chh----------
Confidence 47899999996 457999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ..++.++|++|++.+|.. |++||+.+..... +. ...
T Consensus 66 ------------~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~ 103 (210)
T cd03269 66 ------------I--AARNRIGYLPEERGLYPKMKVIDQLVYLAQLK------------GL----------------KKE 103 (210)
T ss_pred ------------H--HHHccEEEeccCCcCCcCCcHHHHHHHHHHHc------------CC----------------ChH
Confidence 0 124569999999999875 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... .....+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~ 174 (210)
T cd03269 104 EARRRIDEWLERLELSEYA---------NKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL 174 (210)
T ss_pred HHHHHHHHHHHHcCChHHH---------hCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 0123456677776654322 234567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ++||++++|++|+.
T Consensus 175 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 206 (210)
T cd03269 175 ARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206 (210)
T ss_pred HHCCCEEEEECCCHHHHHHhhhEEEEEeCCEE
Confidence 489999999998765 67999999998863
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=346.16 Aligned_cols=214 Identities=24% Similarity=0.268 Sum_probs=165.0
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 79 (254)
T PRK14273 6 AIIETENLNLFYT--DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSN---- 79 (254)
T ss_pred ceEEEeeeEEEeC--CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccc----
Confidence 4799999999996 35799999999999999999999999999999999999997 489999965431100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|..|++|||.++......
T Consensus 80 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~------------------------- 117 (254)
T PRK14273 80 -----------------NFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT------------------------- 117 (254)
T ss_pred -----------------cccHHHHhhceEEEeeccccccCcHHHHHHHHHHhcCC-------------------------
Confidence 00111345679999999999989999999875210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 118 --~~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 190 (254)
T PRK14273 118 --KDKKKLDEIVEQSLKKSALWNEVK-----DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIE 190 (254)
T ss_pred --CCHHHHHHHHHHHHHHhCCchhhH-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence 000001234555666665521110 1113346789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|+|||+++.+ +.||++++|++|+.
T Consensus 191 ~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i 227 (254)
T PRK14273 191 ELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCI 227 (254)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999999865 67999999999875
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=352.00 Aligned_cols=209 Identities=20% Similarity=0.347 Sum_probs=165.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +..
T Consensus 5 ~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~---~~~-------- 72 (283)
T PRK13636 5 ILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKP---IDY-------- 72 (283)
T ss_pred eEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEE---CCC--------
Confidence 6999999999963 4579999999999999999999999999999999999999999999996543 210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .......++.+||+||++ .+|+.|++||+.++.......
T Consensus 73 -------~---~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---------------------------- 114 (283)
T PRK13636 73 -------S---RKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---------------------------- 114 (283)
T ss_pred -------C---cchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcCCC----------------------------
Confidence 0 001113456799999998 578899999998742110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 115 ~~~~~~~~~~~l~~~gL~~~~---------~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~ 185 (283)
T PRK13636 115 EDEVRKRVDNALKRTGIEHLK---------DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLV 185 (283)
T ss_pred HHHHHHHHHHHHHHCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000123456677777765432 23467899999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 186 ~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i 220 (283)
T PRK13636 186 EMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRV 220 (283)
T ss_pred HHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 389999999999876 58999999999875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=339.24 Aligned_cols=211 Identities=27% Similarity=0.383 Sum_probs=159.0
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|++.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-------- 73 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLS-------- 73 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccc--------
Confidence 78999999996421 26999999999999999999999999999999999999999999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.......++.++|++|++ .++ ..|++||+.++.......
T Consensus 74 ------------~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-------------------------- 115 (228)
T cd03257 74 ------------RRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-------------------------- 115 (228)
T ss_pred ------------hhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--------------------------
Confidence 000113456799999999 344 469999997531100000
Q ss_pred CCCCCChHH-HHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDD-LIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~-~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+. ..+.++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 -~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 185 (228)
T cd03257 116 -SKKEARKEAVLLLLVGVGLPEEV---------LNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185 (228)
T ss_pred -cHHHHHHHHHHHHHHHCCCChhH---------hhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHH
Confidence 00000011 12455655542 11 13446779999999999999999999999999999999999999999
Q ss_pred HHHHh---c-CCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA---A-GITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~-g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ + |+|+|++||+++.+. .||++++|++|+.
T Consensus 186 ~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 186 DLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKI 224 (228)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEE
Confidence 98864 3 899999999998765 8999999999864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=348.91 Aligned_cols=210 Identities=22% Similarity=0.304 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 7 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~--------- 75 (269)
T PRK11831 7 LVDMRGVSFTRG--NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMS--------- 75 (269)
T ss_pred eEEEeCeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++.++|+||++.+|.. |+.||+.++..... .. ..
T Consensus 76 -----------~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------~~----------------~~ 117 (269)
T PRK11831 76 -----------RSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT-----------QL----------------PA 117 (269)
T ss_pred -----------hhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc-----------CC----------------CH
Confidence 00111234569999999999976 99999976411000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 118 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 188 (269)
T PRK11831 118 PLLHSTVMMKLEAVGLRGAA---------KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE 188 (269)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 00123455667777665332 233567999999999999999999999999999999999999999888864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 189 ~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i 222 (269)
T PRK11831 189 LNSALGVTCVVVSHDVPEVLSIADHAYIVADKKI 222 (269)
T ss_pred HHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEE
Confidence 389999999998654 67999999999864
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=342.67 Aligned_cols=209 Identities=23% Similarity=0.333 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 69 (240)
T PRK09493 1 MIEFKNVSKHFG--PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPK--------- 69 (240)
T ss_pred CEEEEeEEEEEC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC---------
Confidence 378999999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......++.++|++|++.++. .|++||+.++..... +. ..
T Consensus 70 ------------~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~-----------~~----------------~~ 110 (240)
T PRK09493 70 ------------VDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR-----------GA----------------SK 110 (240)
T ss_pred ------------hhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc-----------CC----------------CH
Confidence 011133567999999998886 599999987421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.++++... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 181 (240)
T PRK09493 111 EEAEKQARELLAKVGLAERA---------HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQD 181 (240)
T ss_pred HHHHHHHHHHHHHcCChHHH---------hcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123456677776664322 234567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 182 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 182 LAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRI 214 (240)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998776 57999999999875
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=334.74 Aligned_cols=201 Identities=24% Similarity=0.314 Sum_probs=159.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~----------- 65 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA----------- 65 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC-----------
Confidence 478999999963 32 399999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|.. |++||+.++.... .. ...
T Consensus 66 ------------~--~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~-~~---------------------------~~~ 103 (211)
T cd03298 66 ------------P--PADRPVSMLFQENNLFAHLTVEQNVGLGLSPG-LK---------------------------LTA 103 (211)
T ss_pred ------------C--HhHccEEEEecccccCCCCcHHHHHhcccccc-cC---------------------------ccH
Confidence 0 123569999999999975 9999998753210 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+++...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~ 174 (211)
T cd03298 104 EDRQAIEVALARVGLAGLEK---------RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDL 174 (211)
T ss_pred HHHHHHHHHHHHcCCHHHHh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 12345667788777654322 23567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 175 ~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 207 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRI 207 (211)
T ss_pred HHhcCCEEEEEecCHHHHHhhhCEEEEEECCEE
Confidence 389999999998765 67999999999864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=345.22 Aligned_cols=213 Identities=23% Similarity=0.267 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 79 (253)
T PRK14242 6 KMEARGLSFFYG--DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH---- 79 (253)
T ss_pred EEEEeeeEEEEC--CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc----
Confidence 599999999996 3579999999999999999999999999999999999975 68999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++|++|++.+|..|++||+.++.... +..
T Consensus 80 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 117 (253)
T PRK14242 80 -----------------VDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVN------------GVK------------- 117 (253)
T ss_pred -----------------cCHHHHhhcEEEEecCCCCCcCcHHHHHHHHHHHc------------CCC-------------
Confidence 01113456799999999999899999998742100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 118 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 190 (253)
T PRK14242 118 --DKAYLAERVERSLRHAALWDEVK-----DRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEE 190 (253)
T ss_pred --CHHHHHHHHHHHHHHcCCchhhh-----HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001234556677666532110 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 191 ~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 191 LIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226 (253)
T ss_pred HHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEE
Confidence 8875 578999999998765 68999999999875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=345.71 Aligned_cols=215 Identities=23% Similarity=0.264 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 11 ~~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~--- 85 (260)
T PRK10744 11 PSKIQVRNLNFYYG--KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP--- 85 (260)
T ss_pred CceEEEEEEEEEeC--CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc---
Confidence 45799999999996 3579999999999999999999999999999999999986 5899999964432100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
..+...+++.++|++|++.+|..|++||+.++..... +.
T Consensus 86 ------------------~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~-----------~~------------ 124 (260)
T PRK10744 86 ------------------KQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFE-----------KL------------ 124 (260)
T ss_pred ------------------ccchHHHhcceEEEecCCccCcCcHHHHHhhhHhhcC-----------CC------------
Confidence 0011234567999999999999999999987521000 00
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++++.+++..... +.......+||||||||++|||||+.+|++|||||||++||+.++..+
T Consensus 125 ----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 195 (260)
T PRK10744 125 ----SRAEMDERVEWALTKAALWNEVK-----DKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI 195 (260)
T ss_pred ----CHHHHHHHHHHHHHHcCCChhhH-----HHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHH
Confidence 00001234566677766532110 112345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ .+||++++|++|+.
T Consensus 196 ~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 233 (260)
T PRK10744 196 EELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGEL 233 (260)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 998875 478999999998765 68999999999875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-40 Score=354.08 Aligned_cols=205 Identities=24% Similarity=0.334 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~--------- 69 (303)
T TIGR01288 4 AIDLVGVSKSYG--DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEP---VP--------- 69 (303)
T ss_pred EEEEEeEEEEeC--CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---Cc---------
Confidence 599999999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....++.+||+||++.++. .|++||+.+..... +. ..
T Consensus 70 --------~----~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~ 109 (303)
T TIGR01288 70 --------S----RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF------------GM----------------ST 109 (303)
T ss_pred --------c----cHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc------------CC----------------CH
Confidence 0 00123567999999999885 59999997421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 110 ~~~~~~~~~ll~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~ 180 (303)
T TIGR01288 110 REIEAVIPSLLEFARLESKA---------DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 180 (303)
T ss_pred HHHHHHHHHHHHHCCChhHh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence 00112345566666654322 233567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 181 ~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i 213 (303)
T TIGR01288 181 LLARGKTILLTTHFMEEAERLCDRLCVLESGRK 213 (303)
T ss_pred HHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999974
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=341.84 Aligned_cols=213 Identities=23% Similarity=0.282 Sum_probs=166.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..+.
T Consensus 2 ~~~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~------- 72 (246)
T PRK14269 2 IAKTTNLNLFYG--KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQ------- 72 (246)
T ss_pred ceeeeeeEEEEC--CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccC-------
Confidence 488999999996 3579999999999999999999999999999999999985 7999999965432111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.++|+||++.+|+.|++||+.++...... .+
T Consensus 73 ----------------~~~~~~~~i~~~~q~~~l~~~tv~eni~~~~~~~~~------------~~-------------- 110 (246)
T PRK14269 73 ----------------DVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGM------------IK-------------- 110 (246)
T ss_pred ----------------CHHHHhhhEEEEecCCccccccHHHHhhhHHhhcCc------------cc--------------
Confidence 111335679999999999999999999875210000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.+.++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|
T Consensus 111 ~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l 185 (246)
T PRK14269 111 NKDEEEALVVDCLQKVGLFEEVK-----DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELL 185 (246)
T ss_pred ChHHHHHHHHHHHHHcCCChhhh-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 00011234566777777642211 1123456789999999999999999999999999999999999999999988
Q ss_pred Hh--cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 735 EA--AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 735 ~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
++ .++|+|+|||+++.+ +.||++++|++|+..
T Consensus 186 ~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~ 220 (246)
T PRK14269 186 KELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI 220 (246)
T ss_pred HHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEE
Confidence 75 589999999998754 689999999998753
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=345.48 Aligned_cols=228 Identities=19% Similarity=0.268 Sum_probs=171.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 12 ~~l~i~nl~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~--- 86 (269)
T PRK14259 12 IIISLQNVTISYG--TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR--- 86 (269)
T ss_pred ceEEEEeEEEEEC--CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc---
Confidence 4699999999996 3579999999999999999999999999999999999987 68999999644321000
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.+....++.++|+||++.+|..|++||+.++......
T Consensus 87 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~------------------------- 123 (269)
T PRK14259 87 ------------------VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGY------------------------- 123 (269)
T ss_pred ------------------CCHHHHhhceEEEccCCccchhhHHHHHhhhhhhcCC-------------------------
Confidence 0011235679999999999988999999875311000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....++++.++++.+++... ++. ......+||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l 193 (269)
T PRK14259 124 ----TGDMDELVERSLRKAAVWDE------CKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKI 193 (269)
T ss_pred ----cHHHHHHHHHHHHHhCCcch------hhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 00011334455665554211 111 2445678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCC---eEEEecCcccc
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSN---WKLEFIDQESL 782 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~---~~~~~~~~~~~ 782 (788)
.+.|++ .++|+|++||+++.+ ..||++++|++|+..++..+ +-.+.-+++.+
T Consensus 194 ~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 194 EETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 998875 478999999998654 78999999999776554444 34444344433
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=340.49 Aligned_cols=215 Identities=20% Similarity=0.292 Sum_probs=165.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 70 (242)
T TIGR03411 2 ILYLEGLSVSFD--GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLP--------- 70 (242)
T ss_pred eEEEEeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCC---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|++|++.+|.+ |++||+.++..... .. .. .+.....
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~---------~~---------~~~~~~~ 117 (242)
T TIGR03411 71 -------------EHQIARAGIGRKFQKPTVFENLTVFENLELALPRDK--SV---------FA---------SLFFRLS 117 (242)
T ss_pred -------------HHHHHhcCeeEeccccccCCCCCHHHHHHHhhhccc--cc---------cc---------ccccccH
Confidence 001123569999999999986 99999987522100 00 00 0000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.++++... ......||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~ 188 (242)
T TIGR03411 118 AEEKDRIEEVLETIGLADEA---------DRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS 188 (242)
T ss_pred HHHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence 01223566777777664322 334567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++.+ ++||+|++|++|+.
T Consensus 189 ~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~ 220 (242)
T TIGR03411 189 LAGKHSVVVVEHDMEFVRSIADKVTVLHQGSV 220 (242)
T ss_pred HhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 478999999998876 57999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=349.02 Aligned_cols=207 Identities=20% Similarity=0.334 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 3 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~--------- 69 (277)
T PRK13652 3 LIETRDLCYSYSG-SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEP---IT--------- 69 (277)
T ss_pred eEEEEEEEEEeCC-CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEE---CC---------
Confidence 4899999999963 3469999999999999999999999999999999999999999999996443 21
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+....++.++||+|++ .+|+.|+.||+.++.......
T Consensus 70 -----------~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~---------------------------- 110 (277)
T PRK13652 70 -----------KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLD---------------------------- 110 (277)
T ss_pred -----------cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcCCC----------------------------
Confidence 001112346799999997 477889999998742110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 111 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~ 181 (277)
T PRK13652 111 EETVAHRVSSALHMLGLEELRD---------RVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLN 181 (277)
T ss_pred HHHHHHHHHHHHHHCCChhHhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001234566777777654332 2356799999999999999999999999999999999999999988886
Q ss_pred h---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ . |+|+|++||+++.+ +.||++++|++|+.
T Consensus 182 ~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 182 DLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRI 216 (277)
T ss_pred HHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeE
Confidence 4 3 89999999998876 78999999999875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=348.97 Aligned_cols=208 Identities=21% Similarity=0.285 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ml~~~~l~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 68 (271)
T PRK13638 1 MLATSDLWFRYQ--DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYS---------- 68 (271)
T ss_pred CeEEEEEEEEcC--CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccc----------
Confidence 478999999996 35799999999999999999999999999999999999999999999965432100
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......++.|+||||++. ++..|+.+|+.++.... +. .
T Consensus 69 -----------~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~------------~~----------------~ 109 (271)
T PRK13638 69 -----------KRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL------------GV----------------P 109 (271)
T ss_pred -----------cCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc------------CC----------------C
Confidence 0011123567999999986 56678999997631100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 110 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 180 (271)
T PRK13638 110 EAEITRRVDEALTLVDAQHFRH---------QPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIR 180 (271)
T ss_pred HHHHHHHHHHHHHHcCCHhHhc---------CCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0001134556677766643322 2356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 181 ~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i 214 (271)
T PRK13638 181 RIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQI 214 (271)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 589999999998766 67999999999874
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=349.89 Aligned_cols=212 Identities=18% Similarity=0.261 Sum_probs=163.3
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~------ 75 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTS------ 75 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc------
Confidence 388999999997422 46999999999999999999999999999999999999999999999654321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
........++.|+|+||++ .+|+.|++||+.++.......
T Consensus 76 -------------~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~------------------------- 117 (280)
T PRK13649 76 -------------KNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVS------------------------- 117 (280)
T ss_pred -------------cccCHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCC-------------------------
Confidence 0001113456799999998 678889999998642100000
Q ss_pred cCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++.. .. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 118 ---~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 185 (280)
T PRK13649 118 ---QEEAEALAREKLALVGISESLF---------EKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELM 185 (280)
T ss_pred ---HHHHHHHHHHHHHHcCCChhhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001123455666666541 11 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ ..||++++|++|+.
T Consensus 186 ~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 186 TLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKL 223 (280)
T ss_pred HHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEE
Confidence 98864 489999999998765 68999999999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.00 Aligned_cols=212 Identities=19% Similarity=0.283 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------ 75 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPET------ 75 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcccc------
Confidence 48899999999632 146999999999999999999999999999999999999999999999654321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
...+....++.++|++|++ .+|..|+.||+.++.......
T Consensus 76 -------------~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~------------------------- 117 (287)
T PRK13641 76 -------------GNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFS------------------------- 117 (287)
T ss_pred -------------ccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCC-------------------------
Confidence 0000112345799999998 577789999998642100000
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ---~~~~~~~~~~~l~~~gL~~~~~---------~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~ 185 (287)
T PRK13641 118 ---EDEAKEKALKWLKKVGLSEDLI---------SKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMM 185 (287)
T ss_pred ---HHHHHHHHHHHHHHcCCChhHh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHH
Confidence 000123456677777664 222 2346779999999999999999999999999999999999999998
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ +.||++++|++|+.
T Consensus 186 ~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 186 QLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKL 223 (287)
T ss_pred HHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 88864 589999999998765 68999999999874
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=356.41 Aligned_cols=206 Identities=24% Similarity=0.310 Sum_probs=163.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 40 ~~i~i~nl~k~y~--~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~--------- 108 (340)
T PRK13536 40 VAIDLAGVSKSYG--DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPAR--------- 108 (340)
T ss_pred eeEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcc---------
Confidence 3699999999996 45799999999999999999999999999999999999999999999965432110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
....++.|||+||++.++. .|+.||+.+..... +. .
T Consensus 109 ---------------~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~ 145 (340)
T PRK13536 109 ---------------ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF------------GM----------------S 145 (340)
T ss_pred ---------------hHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc------------CC----------------C
Confidence 1134567999999999874 69999997521000 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 146 ~~~~~~~~~~ll~~~~L~~~~---------~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~ 216 (340)
T PRK13536 146 TREIEAVIPSLLEFARLESKA---------DARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLR 216 (340)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 000112344566666654322 23456799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 217 ~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i 250 (340)
T PRK13536 217 SLLARGKTILLTTHFMEEAERLCDRLCVLEAGRK 250 (340)
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998765 68999999999975
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=342.95 Aligned_cols=215 Identities=25% Similarity=0.300 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (250)
T PRK11264 3 AIEVKNLVKKFH--GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTAR--------- 71 (250)
T ss_pred cEEEeceEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.... ...+....++.++||||++.+|. .|++||+.++..... +. ..
T Consensus 72 -----~~~~-~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----------~~----------------~~ 118 (250)
T PRK11264 72 -----SLSQ-QKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK-----------GE----------------PK 118 (250)
T ss_pred -----cccc-hhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc-----------CC----------------CH
Confidence 0000 00011234567999999999886 699999976421000 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 119 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 189 (250)
T PRK11264 119 EEATARARELLAKVGLAGKE---------TSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ 189 (250)
T ss_pred HHHHHHHHHHHHHcCCcchh---------hCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 00113455667776654322 234678999999999999999999999999999999999999999988764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 190 ~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 190 LAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998765 67999999999864
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=339.88 Aligned_cols=205 Identities=23% Similarity=0.342 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 73 (237)
T PRK11614 5 MLSFDKVSAHYG--KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQ--------- 73 (237)
T ss_pred EEEEEeEEEeeC--CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCC---------
Confidence 699999999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|++|++.+|.. |++||+.++.......
T Consensus 74 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~----------------------------- 111 (237)
T PRK11614 74 -------------TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERD----------------------------- 111 (237)
T ss_pred -------------HHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhccChh-----------------------------
Confidence 001234569999999999985 9999998753211000
Q ss_pred CCChHHHHHHHHhc-ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDV-KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~-~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+ ++. +........||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 112 -~~~~~~~~~l~~~~~l~---------~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~ 181 (237)
T PRK11614 112 -QFQERIKWVYELFPRLH---------ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIE 181 (237)
T ss_pred -HHHHHHHHHHHHHHHHH---------HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 0011233334433 122 11233456799999999999999999999999999999999999999988876
Q ss_pred h---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++ ..++||++++|++|+.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (237)
T PRK11614 182 QLREQGMTIFLVEQNANQALKLADRGYVLENGHV 215 (237)
T ss_pred HHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEE
Confidence 4 5899999999986 5678999999999864
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.61 Aligned_cols=211 Identities=27% Similarity=0.377 Sum_probs=164.8
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++||++.|++++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-------- 73 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGAS-------- 73 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcC--------
Confidence 78999999996422 56999999999999999999999999999999999999999999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......++.++|+||++.+|. .|+.||+.++...... . .
T Consensus 74 ------------~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~-----------~----------------~ 114 (220)
T TIGR02982 74 ------------EKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN-----------L----------------S 114 (220)
T ss_pred ------------HhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC-----------C----------------C
Confidence 0001123567999999999997 6999999864210000 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.++++...+ ..+.+||||||||++|||||+++|++|||||||++||+++.+.+.+.|+
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~ 185 (220)
T TIGR02982 115 YQEARERARAMLEAVGLGDHLD---------YYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ 185 (220)
T ss_pred HHHHHHHHHHHHHHcCChhhhh---------cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence 0001234566777776653322 3356799999999999999999999999999999999999999988885
Q ss_pred h----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++..++||+|++|++|+.
T Consensus 186 ~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 186 KLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 4 48999999999988889999999998853
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=343.01 Aligned_cols=210 Identities=25% Similarity=0.326 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 69 (255)
T PRK11231 2 TLRTENLTVGYG--TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISML---------- 69 (255)
T ss_pred EEEEEeEEEEEC--CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHC----------
Confidence 489999999996 45799999999999999999999999999999999999999999999964321111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|+||++.++.+ |+.||+.++...... . .+ ...
T Consensus 70 -------------~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~-----------~------------~~-~~~ 112 (255)
T PRK11231 70 -------------SSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLS-----------L------------WG-RLS 112 (255)
T ss_pred -------------CHHHHhhheEEecccCCCCCCccHHHHHHhccchhhh-----------h------------cc-CCC
Confidence 111234569999999998876 999999875321000 0 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 113 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 183 (255)
T PRK11231 113 AEDNARVNQAMEQTRINHLA---------DRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE 183 (255)
T ss_pred HHHHHHHHHHHHHcCCHHHH---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01123456677777665322 234577999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 184 l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 216 (255)
T PRK11231 184 LNTQGKTVVTVLHDLNQASRYCDHLVVLANGHV 216 (255)
T ss_pred HHHCCCEEEEEECCHHHHHHhcCEEEEEECCeE
Confidence 589999999998764 68999999999875
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=347.76 Aligned_cols=209 Identities=20% Similarity=0.300 Sum_probs=166.0
Q ss_pred cEEEeeeEEEcCCC----CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTS----KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~----~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+|+++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~------ 77 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDE------ 77 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccc------
Confidence 69999999999742 24699999999999999999999999999999999999999999999964332110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.+||+||++. ++..|+.+|+.|+.......
T Consensus 78 ----------------~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~------------------------ 117 (280)
T PRK13633 78 ----------------ENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIP------------------------ 117 (280)
T ss_pred ----------------ccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcCCC------------------------
Confidence 011123567999999983 66679999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 118 ----~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~ 184 (280)
T PRK13633 118 ----PEEIRERVDESLKKVGMYEYRR---------HAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVV 184 (280)
T ss_pred ----HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001234667778777754433 235679999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+..||++++|++|+.
T Consensus 185 ~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i 222 (280)
T PRK13633 185 NTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKV 222 (280)
T ss_pred HHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEE
Confidence 88864 38999999999987767999999999874
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=319.62 Aligned_cols=410 Identities=16% Similarity=0.198 Sum_probs=265.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHh
Q 040758 257 QRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRY 336 (788)
Q Consensus 257 ~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~ 336 (788)
.+++.|+..+. +.......+.+.++.+++.++.+++++++++++.++|+++.++...+...+..+.....++.+.++..
T Consensus 109 a~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~ 187 (546)
T COG4615 109 AGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQN 187 (546)
T ss_pred hhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 47889998887 23334455777777777888899999999999999998888777777777777766666777777777
Q ss_pred HHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHh---cCcccH
Q 040758 337 GLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT-SGYRYLIQILPAAVVAPMYF---SGKIEF 412 (788)
Q Consensus 337 ~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~G~it~ 412 (788)
......++.++.+... ++.+. .+.+.+....++.++... ..+.+. ....+...++..+++..+|. -+.-+.
T Consensus 188 ~y~~il~G~KEL~l~r-~R~~~-~h~~~~~~~a~~~r~~~~---~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~st 262 (546)
T COG4615 188 DYQTILEGRKELTLNR-ERAEY-VHNNLYIPDAQEYRHHII---RANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWAST 262 (546)
T ss_pred HHHHHhcchhhheech-HHHHH-HHhhhcCcchHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 6677888888887654 32221 223333332222222111 111111 11111111111222222221 121111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCC
Q 040758 413 GVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSP 492 (788)
Q Consensus 413 G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (788)
.....++.....+-+++..++..+..+..+...++++.++.. +...+ . + ......+
T Consensus 263 ~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~--~~~~a-~----~-----------------~~~q~~p 318 (546)
T COG4615 263 NVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLEL--APYKA-D----F-----------------PRPQAFP 318 (546)
T ss_pred hHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhc--CCccc-c----C-----------------CCCCcCC
Confidence 111111111222334444455455555666667777765432 11100 0 0 0000011
Q ss_pred cCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 493 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 493 ~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.=..|+++||.|.|++ ...-+..||++|++||.+-|+|.|||||||++++|.|+|.|++|+|++||+ .+.
T Consensus 319 --~~~~lelrnvrfay~~-~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~---pV~---- 388 (546)
T COG4615 319 --DWKTLELRNVRFAYQD-NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK---PVS---- 388 (546)
T ss_pred --cccceeeeeeeeccCc-ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCc---cCC----
Confidence 1236999999999985 335689999999999999999999999999999999999999999999654 331
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..++++.|+-++-|+-|.+||+.++- +.
T Consensus 389 ----------------~e~ledYR~LfSavFsDyhLF~~ll~-----~e------------------------------- 416 (546)
T COG4615 389 ----------------AEQLEDYRKLFSAVFSDYHLFDQLLG-----PE------------------------------- 416 (546)
T ss_pred ----------------CCCHHHHHHHHHHHhhhHhhhHhhhC-----Cc-------------------------------
Confidence 11334556668889999999865431 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
..++.+.+...|+++.+.+.....+|--+ ..+||-|||+|+|+--|++-+.||++|||=-+--||.=++..++
T Consensus 417 ---~~as~q~i~~~LqrLel~~ktsl~d~~fs----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~ 489 (546)
T COG4615 417 ---GKASPQLIEKWLQRLELAHKTSLNDGRFS----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQ 489 (546)
T ss_pred ---cCCChHHHHHHHHHHHHhhhhcccCCccc----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHH
Confidence 01334455566666666544333222111 23599999999999999999999999999999999999999887
Q ss_pred HH----HhcCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QI----EAAGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L----~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ ++.|+|++.||||-.....|||++.+++|+.
T Consensus 490 ~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 490 VLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQL 526 (546)
T ss_pred HHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCce
Confidence 54 5689999999999888888999999999974
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=348.81 Aligned_cols=209 Identities=24% Similarity=0.314 Sum_probs=165.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR---GKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~---G~I~~~~~~~~~i~~~~~~ 573 (788)
.+|+++|++|+|++..+++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.+....
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~------ 77 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK------ 77 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcC------
Confidence 3699999999997434569999999999999999999999999999999999999998 8999964432110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+....++++||+||++ .+++.|+.||+.|+.......
T Consensus 78 -----------------~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~------------------------ 116 (282)
T PRK13640 78 -----------------TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP------------------------ 116 (282)
T ss_pred -----------------CHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCCCC------------------------
Confidence 1112346799999998 356789999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 117 ----~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~ 183 (282)
T PRK13640 117 ----RPEMIKIVRDVLADVGMLDYID---------SEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQIL 183 (282)
T ss_pred ----HHHHHHHHHHHHHHCCChhHhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 0001134666777777654322 335679999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+..||++++|++|+.
T Consensus 184 ~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i 221 (282)
T PRK13640 184 KLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKL 221 (282)
T ss_pred HHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 88864 38999999999987788999999999875
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=345.43 Aligned_cols=208 Identities=20% Similarity=0.282 Sum_probs=164.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 76 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDD---------- 76 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 6999999999974334699999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc--cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+....++.++|++|++. ++..|+++|+.++.......
T Consensus 77 -------------~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~---------------------------- 115 (269)
T PRK13648 77 -------------NFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVP---------------------------- 115 (269)
T ss_pred -------------CHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcCCC----------------------------
Confidence 11134567999999984 44568999998752110000
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 186 (269)
T PRK13648 116 YDEMHRRVSEALKQVDMLERA---------DYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186 (269)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123455677777665332 23456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+..||+|++|++|+.
T Consensus 187 ~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i 220 (269)
T PRK13648 187 KVKSEHNITIISITHDLSEAMEADHVIVMNKGTV 220 (269)
T ss_pred HHHHhcCCEEEEEecCchHHhcCCEEEEEECCEE
Confidence 4 38999999999887767999999999875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=355.05 Aligned_cols=215 Identities=24% Similarity=0.340 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEcCCC-----------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc
Q 040758 497 KLLDIEDLTLKTPTS-----------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~-----------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~ 565 (788)
..|+++||+++|+.+ ...+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 369999999999631 246899999999999999999999999999999999999999999999655432
Q ss_pred ccccCCCccchhhhcccccccchhcccccCcceEEEEcccc--ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccch
Q 040758 566 ETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFL 642 (788)
Q Consensus 566 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i 642 (788)
++. .......++.|+||+|+| .++ ..|+.|||.++..... +
T Consensus 87 ~~~--------------------~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~--------------~-- 130 (331)
T PRK15079 87 GMK--------------------DDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH--------------P-- 130 (331)
T ss_pred cCC--------------------HHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc--------------c--
Confidence 221 011123456799999998 466 4699999976311000 0
Q ss_pred hhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040758 643 TSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722 (788)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL 722 (788)
........+.+.+.++.+++.. +....++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 131 ----------~~~~~~~~~~~~~~l~~vgl~~--------~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~L 192 (331)
T PRK15079 131 ----------KLSRQEVKDRVKAMMLKVGLLP--------NLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSAL 192 (331)
T ss_pred ----------CCCHHHHHHHHHHHHHHcCCCh--------HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 0000001234566777776631 0123456789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 723 DEANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 723 D~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+.+...+.+.|++ .|.|+|+|||+++.+ ..||+|++|.+|+.
T Consensus 193 D~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~i 240 (331)
T PRK15079 193 DVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240 (331)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999988754 389999999999877 47999999999864
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=334.55 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=158.3
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+...+.
T Consensus 1 i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------------ 66 (206)
T TIGR03608 1 LKNISKKFG--DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLN------------ 66 (206)
T ss_pred CcceEEEEC--CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccc------------
Confidence 468999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
. .......++.++|++|++.+|. .|++||+.++...... .....
T Consensus 67 -----~--~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~~----------------------------~~~~~ 111 (206)
T TIGR03608 67 -----S--KKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKL----------------------------SKKEK 111 (206)
T ss_pred -----h--hhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcCC----------------------------CHHHH
Confidence 0 0001123567999999999997 6999999763210000 00011
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+++.++++.++++...+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 182 (206)
T TIGR03608 112 REKKKEALEKVGLNLKLK---------QKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND 182 (206)
T ss_pred HHHHHHHHHHcCchhhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh
Confidence 245667777777653322 33567999999999999999999999999999999999999999998865
Q ss_pred cCCEEEEEecCcchhhcCCEEEEE
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.|+|+|++||+++....||++++|
T Consensus 183 ~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 183 EGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred cCCEEEEEeCCHHHHhhcCEEEeC
Confidence 489999999999888889999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=343.71 Aligned_cols=210 Identities=25% Similarity=0.346 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 11 ~l~i~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 78 (265)
T PRK10575 11 TFALRNVSFRVP--GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESW---------- 78 (265)
T ss_pred eEEEeeEEEEEC--CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhC----------
Confidence 699999999996 35799999999999999999999999999999999999999999999965432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|++|++.++.. |+.||+.++..... +. .. ...
T Consensus 79 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----------~~------------~~-~~~ 121 (265)
T PRK10575 79 -------------SSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWH-----------GA------------LG-RFG 121 (265)
T ss_pred -------------CHHHHhhheEEeccCCCCCCCccHHHHHHhCccccc-----------cc------------cc-CCC
Confidence 111235679999999877654 99999987532100 00 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 122 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~ 192 (265)
T PRK10575 122 AADREKVEEAISLVGLKPLAH---------RLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 011235667777777654322 23567999999999999999999999999999999999999999888854
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ +.||+|++|++|+.
T Consensus 193 l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 193 LSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226 (265)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 389999999998765 68999999999875
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=348.38 Aligned_cols=206 Identities=26% Similarity=0.384 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+. ++.+|+||||+|++||++||+||||||||||+|+|+|+..|++|+|.++|.+ ..
T Consensus 4 ~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~---~~--------- 70 (293)
T COG1131 4 VIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYD---VV--------- 70 (293)
T ss_pred eeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEe---Cc---------
Confidence 4789999999962 4689999999999999999999999999999999999999999999996443 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++|||+||++.++.. |++||+.|-... .+ ...
T Consensus 71 ------------~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l------------~~----------------~~~ 110 (293)
T COG1131 71 ------------KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARL------------YG----------------LSK 110 (293)
T ss_pred ------------cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHH------------hC----------------CCh
Confidence 0012346779999999998865 999999762110 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... .....+||+|||||++||+||+++|++|||||||++||+.+...+.+.|++
T Consensus 111 ~~~~~~~~~~l~~~~L~~~~---------~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~ 181 (293)
T COG1131 111 EEAEERIEELLELFGLEDKA---------NKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRE 181 (293)
T ss_pred hHHHHHHHHHHHHcCCchhh---------CcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence 11245688889988876421 234567999999999999999999999999999999999999999998864
Q ss_pred ---cC-CEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AG-ITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g-~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.| +||+++||.++.+ ..||+|++|++|+.
T Consensus 182 l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~ 215 (293)
T COG1131 182 LAKEGGVTILLSTHILEEAEELCDRVIILNDGKI 215 (293)
T ss_pred HHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEE
Confidence 45 8999999998654 56999999999975
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=341.44 Aligned_cols=198 Identities=24% Similarity=0.301 Sum_probs=159.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~--------- 66 (255)
T PRK11248 1 MLQISHLYADYG--GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGK---PVE--------- 66 (255)
T ss_pred CEEEEEEEEEeC--CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCE---ECC---------
Confidence 378999999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+..++|++|++.+|. .|++||+.++.... +.. .
T Consensus 67 ----------------~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~~----------------~ 102 (255)
T PRK11248 67 ----------------GPGAERGVVFQNEGLLPWRNVQDNVAFGLQLA------------GVE----------------K 102 (255)
T ss_pred ----------------CCCCcEEEEeCCCccCCCCcHHHHHHhHHHHc------------CCC----------------H
Confidence 01234899999999887 59999997642100 000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 103 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 173 (255)
T PRK11248 103 MQRLEIAHQMLKKVGLEGAE---------KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLK 173 (255)
T ss_pred HHHHHHHHHHHHHcCChhHh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 00123466777777665332 234567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.|+|+|+|||+++.+ ..||++++|++
T Consensus 174 ~~~~~g~tviivsH~~~~~~~~~d~i~~l~~ 204 (255)
T PRK11248 174 LWQETGKQVLLITHDIEEAVFMATELVLLSP 204 (255)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 389999999998765 67999999985
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=337.84 Aligned_cols=203 Identities=23% Similarity=0.305 Sum_probs=157.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (230)
T TIGR03410 1 LEVSNLNVYYG--QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP---------- 68 (230)
T ss_pred CEEEeEEEEeC--CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999643321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.. |++||+.++......
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~------------------------------- 105 (230)
T TIGR03410 69 ------------PHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPR------------------------------- 105 (230)
T ss_pred ------------HHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcCc-------------------------------
Confidence 001124569999999999976 999999764211000
Q ss_pred CChHHHHHHHHhcc-cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 658 PSTDDLIKALEDVK-LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~-l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+...+.++.++ +... ......+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 106 ~~~~~~~~~l~~~~~l~~~---------~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~ 176 (230)
T TIGR03410 106 RSRKIPDEIYELFPVLKEM---------LGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176 (230)
T ss_pred chHHHHHHHHHHHHhHHHH---------hhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence 00111233333332 1111 2345667999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+. .||++++|++|+.
T Consensus 177 ~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 177 LRAEGGMAILLVEQYLDFARELADRYYVMERGRV 210 (230)
T ss_pred HHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3899999999987664 7999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=343.90 Aligned_cols=216 Identities=25% Similarity=0.270 Sum_probs=167.0
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 17 ~~~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~-- 92 (267)
T PRK14235 17 EIKMRARDVSVFYG--EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR-- 92 (267)
T ss_pred CceEEEEeEEEEEC--CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc--
Confidence 45799999999996 35799999999999999999999999999999999999975 8999999644321100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+++.++|++|++.+|..|+.||+.++...... .
T Consensus 93 -------------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~------------~----------- 130 (267)
T PRK14235 93 -------------------LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGL------------A----------- 130 (267)
T ss_pred -------------------cchHHHhhceEEEecCCCCCCCcHHHHHHHHHHhccc------------c-----------
Confidence 0111345679999999999988999999874210000 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 131 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14235 131 ---RSKAELDEIVETSLRKAGLWEEVK-----DRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202 (267)
T ss_pred ---cchHHHHHHHHHHHHHcCCchhhh-----HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 000001234566777776642111 012344678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 203 ~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 203 EELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNL 240 (267)
T ss_pred HHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 998875 478999999998766 67999999999865
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=346.54 Aligned_cols=208 Identities=23% Similarity=0.324 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 498 LLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
.|+++||+++|++. ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~--------- 74 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAE--------- 74 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcC---------
Confidence 58999999999742 24589999999999999999999999999999999999999999999964432111
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+....++.+||++|++ .++..|+.|||.++.......
T Consensus 75 --------------~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~--------------------------- 113 (277)
T PRK13642 75 --------------NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIP--------------------------- 113 (277)
T ss_pred --------------CHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcCCC---------------------------
Confidence 1112356799999998 366789999998742110000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.+++....+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 114 -~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 114 -REEMIKRVDEALLAVNMLDFKT---------REPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred -HHHHHHHHHHHHHHCCCHhHhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 0000134556677766654322 235679999999999999999999999999999999999999999888
Q ss_pred Hh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 184 ~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i 218 (277)
T PRK13642 184 HEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEI 218 (277)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 63 38999999999988778999999999874
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=339.00 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 71 (241)
T PRK10895 3 TLTAKNLAKAYK--GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLP--------- 71 (241)
T ss_pred eEEEeCcEEEeC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 589999999996 357999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++|+||++.+|. .|+.||+.+....... . ..
T Consensus 72 -------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-----------~----------------~~ 111 (241)
T PRK10895 72 -------------LHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDD-----------L----------------SA 111 (241)
T ss_pred -------------HHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcccc-----------c----------------CH
Confidence 01123457999999999887 4999999764210000 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
......+.+.++.+++... .......||||||||++|||||+++|++|||||||++||+.+...+.+.+.+
T Consensus 112 ~~~~~~~~~~l~~~~l~~~---------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 182 (241)
T PRK10895 112 EQREDRANELMEEFHIEHL---------RDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEH 182 (241)
T ss_pred HHHHHHHHHHHHHcCCHHH---------hhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0012345556666655422 1334567999999999999999999999999999999999999988877753
Q ss_pred ---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++ ..+.||++++|++|+.
T Consensus 183 ~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 183 LRDSGLGVLITDHNVRETLAVCERAYIVSQGHL 215 (241)
T ss_pred HHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeE
Confidence 5899999999985 5578999999999875
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=358.62 Aligned_cols=197 Identities=22% Similarity=0.252 Sum_probs=156.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..... ...
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~--------------------~~~ 64 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQS--------------------PVE 64 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCC--------------------HHH
Confidence 457999999999999999999999999999999999999999999999654332211 000
Q ss_pred cc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
.. ..+++|+||+|++.+|+ .|++|||.|+.... +. ......+.+.++++.
T Consensus 65 ~~~~rr~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~------------~~----------------~~~~~~~~~~~~l~~ 116 (363)
T TIGR01186 65 LREVRRKKIGMVFQQFALFPHMTILQNTSLGPELL------------GW----------------PEQERKEKALELLKL 116 (363)
T ss_pred HHHHHhCcEEEEECCCcCCCCCCHHHHHHHHHHHc------------CC----------------CHHHHHHHHHHHHHh
Confidence 00 11567999999999997 59999998752110 00 000112456778888
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
++++.+. ...+.+|||||||||+|||||+.+|++||||||||+||+.+...+++.+.+ .|+|+|+||
T Consensus 117 vgL~~~~---------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vT 187 (363)
T TIGR01186 117 VGLEEYE---------HRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFIT 187 (363)
T ss_pred cCCchhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 7775433 345678999999999999999999999999999999999999999998753 389999999
Q ss_pred cCcch-hhcCCEEEEEccCCC
Q 040758 746 HRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 746 Hr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|+++. .+.||+|++|++|+.
T Consensus 188 Hd~~ea~~~~drI~vl~~G~i 208 (363)
T TIGR01186 188 HDLDEAIRIGDRIVIMKAGEI 208 (363)
T ss_pred CCHHHHHHhCCEEEEEeCCEE
Confidence 99875 688999999999875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=340.94 Aligned_cols=222 Identities=22% Similarity=0.323 Sum_probs=165.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~--------- 73 (255)
T PRK11300 5 LLSVSGLMMRFG--GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLP--------- 73 (255)
T ss_pred eEEEeeEEEEEC--CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+..++|+||++.+|.. |++||+.++.......... .+.... . ... ...
T Consensus 74 -------------~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~----~---~~~-~~~ 127 (255)
T PRK11300 74 -------------GHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLF-----SGLLKT----P---AFR-RAE 127 (255)
T ss_pred -------------HHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhh-----hhhccc----c---ccc-cch
Confidence 001123469999999999985 9999999853211000000 000000 0 000 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+
T Consensus 128 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~ 198 (255)
T PRK11300 128 SEALDRAATWLERVGLLEHA---------NRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE 198 (255)
T ss_pred hHHHHHHHHHHHhCChhhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence 01123455667766654322 345678999999999999999999999999999999999999999988853
Q ss_pred ---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+++.+ +.||++++|++|+.
T Consensus 199 ~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i 232 (255)
T PRK11300 199 LRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTP 232 (255)
T ss_pred HHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 3 89999999998765 67999999999875
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=339.28 Aligned_cols=212 Identities=26% Similarity=0.260 Sum_probs=164.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~----- 75 (250)
T PRK14247 3 KIEIRDLKVSFG--QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKM----- 75 (250)
T ss_pred eEEEEeeEEEEC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcC-----
Confidence 489999999996 35799999999999999999999999999999999999974 799999965432111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+...+++.|+|+||++.+| ..|++||+.++.......
T Consensus 76 ------------------~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~------------------------ 113 (250)
T PRK14247 76 ------------------DVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLV------------------------ 113 (250)
T ss_pred ------------------CHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcccc------------------------
Confidence 1113456799999999765 579999998742100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 114 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~ 186 (250)
T PRK14247 114 --KSKKELQERVRWALEKAQLWDEVK-----DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIE 186 (250)
T ss_pred --CCHHHHHHHHHHHHHHcCCCcchh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001245667778777643211 0113445779999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14247 187 SLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQI 223 (250)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeE
Confidence 98875 589999999998865 68999999999875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=348.58 Aligned_cols=214 Identities=17% Similarity=0.211 Sum_probs=163.1
Q ss_pred CcEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+.|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~----- 79 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANL----- 79 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccc-----
Confidence 5699999999996422 25999999999999999999999999999999999999999999999644311000
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. ...+...+++.|+|++|++ .+|..|++||+.++.......
T Consensus 80 --------~-----~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~------------------------ 122 (289)
T PRK13645 80 --------K-----KIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGEN------------------------ 122 (289)
T ss_pred --------c-----ccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCC------------------------
Confidence 0 0001123456799999998 467789999998742100000
Q ss_pred ccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.+.++.+++. .. ....+.+||||||||++|||||+.+|++|||||||++||+.+.+.+
T Consensus 123 ----~~~~~~~~~~ll~~~~L~~~~---------~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 189 (289)
T PRK13645 123 ----KQEAYKKVPELLKLVQLPEDY---------VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDF 189 (289)
T ss_pred ----HHHHHHHHHHHHHHcCCChhH---------hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHH
Confidence 000112344566666552 11 1344678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 190 ~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 229 (289)
T PRK13645 190 INLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229 (289)
T ss_pred HHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 888754 38999999999875 478999999999875
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=343.92 Aligned_cols=212 Identities=28% Similarity=0.362 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCC-------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS-------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~-- 79 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD-- 79 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccC--
Confidence 48999999999631 357999999999999999999999999999999999999999999999654322110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.|+|+||++. ++ ..|++||+.++.... .+.
T Consensus 80 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~-----------~~~--------- 121 (265)
T TIGR02769 80 ------------------RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL-----------TSL--------- 121 (265)
T ss_pred ------------------HHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh-----------cCC---------
Confidence 0011123567999999973 44 369999996531000 000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++. ... ...+..||||||||++|||||+.+|++|||||||++||+.+
T Consensus 122 -------~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~ 185 (265)
T TIGR02769 122 -------DESEQKARIAELLDMVGLRSEDA---------DKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVL 185 (265)
T ss_pred -------CHHHHHHHHHHHHHHcCCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 0001124566777777663 221 23456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+..+.+.|++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 186 ~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 186 QAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229 (265)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE
Confidence 9999988864 389999999998776 57999999999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=346.28 Aligned_cols=209 Identities=22% Similarity=0.343 Sum_probs=164.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~---------- 69 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD---------- 69 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc----------
Confidence 3789999999963 45699999999999999999999999999999999999999999999965432100
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..+...+++.|+|+||++ .+|+.|+.||+.++...... .
T Consensus 70 -----------~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~----------------------------~ 110 (275)
T PRK13639 70 -----------KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGL----------------------------S 110 (275)
T ss_pred -----------cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcCC----------------------------C
Confidence 001112356799999997 57788999999764210000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.
T Consensus 111 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 181 (275)
T PRK13639 111 KEEVEKRVKEALKAVGMEGFEN---------KPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLY 181 (275)
T ss_pred HHHHHHHHHHHHHHCCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 0001234567777777653322 3356799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 182 ~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i 215 (275)
T PRK13639 182 DLNKEGITIIISTHDVDLVPVYADKVYVMSDGKI 215 (275)
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 489999999998765 58999999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=339.03 Aligned_cols=213 Identities=27% Similarity=0.328 Sum_probs=163.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...
T Consensus 2 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~~~------- 69 (242)
T PRK11124 2 SIQLNGINCFYG--AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNH---FDFS------- 69 (242)
T ss_pred EEEEEeeEEEEC--CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEe---cccc-------
Confidence 488999999996 3579999999999999999999999999999999999999999999996543 2100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...........+++++|+||++.+|.. |+.||+.+..... .+. ..
T Consensus 70 -------~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~-----------~~~----------------~~ 115 (242)
T PRK11124 70 -------KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV-----------LGL----------------SK 115 (242)
T ss_pred -------cccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHH-----------cCC----------------CH
Confidence 000000111335679999999999975 9999997521100 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.++++... .....+||||||||++|||||+.+|++|||||||++||+++...+.+.|++
T Consensus 116 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~ 186 (242)
T PRK11124 116 DQALARAEKLLERLRLKPYA---------DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE 186 (242)
T ss_pred HHHHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence 00123455667766664322 233567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+.. ..||++++|++|+.
T Consensus 187 ~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHI 219 (242)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 589999999998776 57999999999874
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=341.54 Aligned_cols=222 Identities=21% Similarity=0.266 Sum_probs=166.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+........
T Consensus 4 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~----- 76 (257)
T PRK10619 4 NKLNVIDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD----- 76 (257)
T ss_pred ccEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccc-----
Confidence 4699999999996 457999999999999999999999999999999999999999999999654321100000
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..............++.++|+||++.+|. .|++||+.++.... .+. .
T Consensus 77 -----~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-----------~~~----------------~ 124 (257)
T PRK10619 77 -----GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-----------LGL----------------S 124 (257)
T ss_pred -----cccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-----------CCC----------------C
Confidence 00000000001133567999999999997 49999997642100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.+++.... ......+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+
T Consensus 125 ~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 196 (257)
T PRK10619 125 KQEARERAVKYLAKVGIDERA--------QGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQ 196 (257)
T ss_pred HHHHHHHHHHHHHHcCCChhh--------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456677777665321 023456799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+. +||+|++|++|+.
T Consensus 197 ~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 197 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 4 5899999999988765 7999999999875
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=340.75 Aligned_cols=206 Identities=28% Similarity=0.379 Sum_probs=163.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 ~l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~---------- 69 (258)
T PRK13548 2 MLEARNLSVRLG--GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADW---------- 69 (258)
T ss_pred eEEEEeEEEEeC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccC----------
Confidence 489999999996 35799999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|++|++.+ +..|++||+.++...... ..
T Consensus 70 -------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~----------------------------~~ 108 (258)
T PRK13548 70 -------------SPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGL----------------------------SR 108 (258)
T ss_pred -------------CHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccCC----------------------------Cc
Confidence 111234569999999988 567999999875211000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL------SKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl------~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....+.+.++++.+++.... .....+||||||||++|||||+ .+|++|||||||++||+.+...+
T Consensus 109 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l 179 (258)
T PRK13548 109 AEDDALVAAALAQVDLAHLA---------GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHV 179 (258)
T ss_pred HHHHHHHHHHHHHcCCHhHh---------cCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHH
Confidence 01123456677777664322 2345679999999999999999 59999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|++||+++.+ ++||+|++|++|+.
T Consensus 180 ~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 180 LRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE
Confidence 888753 489999999998765 58999999999874
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=342.10 Aligned_cols=215 Identities=24% Similarity=0.274 Sum_probs=166.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
...|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 18 ~~~l~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~--- 92 (267)
T PRK14237 18 EIALSTKDLHVYYG--KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK--- 92 (267)
T ss_pred CeEEEEeeEEEEEC--CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc---
Confidence 34799999999995 4679999999999999999999999999999999999997 5899999964332100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.......++.|+|+||++.+|..|++||+.++..... .
T Consensus 93 ------------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~------------~------------ 130 (267)
T PRK14237 93 ------------------EINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAG------------V------------ 130 (267)
T ss_pred ------------------cCChHHHhcceEEEecCCccccccHHHHHHhHHHhcC------------C------------
Confidence 0011133567999999999999999999987521100 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......++.+.++++.+++..... +..+..+.+||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 131 ---~~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 202 (267)
T PRK14237 131 ---KDKKVLDEIVETSLKQAALWDQVK-----DDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQL 202 (267)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCchhh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 000001234556677766542111 112455678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .+.|+|+|||+++.+ ++||++++|++|+.
T Consensus 203 ~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 240 (267)
T PRK14237 203 EETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDL 240 (267)
T ss_pred HHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 998875 579999999998765 78999999999875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=342.24 Aligned_cols=214 Identities=24% Similarity=0.293 Sum_probs=163.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 20 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 93 (268)
T PRK14248 20 HILEVKDLSIYYG--EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDS---- 93 (268)
T ss_pred ceEEEEEEEEEeC--CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccc----
Confidence 4699999999996 4579999999999999999999999999999999999865 7999999964332110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|+.|+.||+.++.......
T Consensus 94 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------ 132 (268)
T PRK14248 94 -----------------NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGER------------------------ 132 (268)
T ss_pred -----------------cccHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC------------------------
Confidence 001113356799999999999999999998642100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 133 ---~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 204 (268)
T PRK14248 133 ---RKSVLDEIVEESLTKAALWDEVK-----DRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIE 204 (268)
T ss_pred ---cHHHHHHHHHHHHHHcCCCcchH-----HHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHH
Confidence 00001123455566655431100 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++. .+.||++++|++|+.
T Consensus 205 ~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i 241 (268)
T PRK14248 205 ELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDL 241 (268)
T ss_pred HHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEE
Confidence 98875 47899999999875 468999999999864
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=321.26 Aligned_cols=172 Identities=30% Similarity=0.421 Sum_probs=146.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 68 (178)
T cd03229 1 LELKNVSKRYG--QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE---------- 68 (178)
T ss_pred CEEEEEEEEEC--CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....++.++|++|++.+|. .|++||+.+.
T Consensus 69 ----------~-~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------- 100 (178)
T cd03229 69 ----------D-ELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------- 100 (178)
T ss_pred ----------h-hHHHHhhcEEEEecCCccCCCCCHHHheeec-------------------------------------
Confidence 0 01133567999999998885 4888887430
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 101 ----------------------------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 146 (178)
T cd03229 101 ----------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSL 146 (178)
T ss_pred ----------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988864
Q ss_pred --c-CCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 737 --A-GITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
+ |+|+|++||+.+.+. .||++++|++|+
T Consensus 147 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 147 QAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 3 799999999987765 799999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=319.74 Aligned_cols=206 Identities=27% Similarity=0.308 Sum_probs=165.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++++++++++|++ ...+++|+||+++.||++||.|||||||||++++|+.++.|++|+|.+||.|...
T Consensus 1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~----------- 68 (245)
T COG4555 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR----------- 68 (245)
T ss_pred CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-----------
Confidence 4789999999974 4458999999999999999999999999999999999999999999997554321
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....|++||+++-+..++.. |.+|||.|-..-..+ ..
T Consensus 69 -------------~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~l----------------------------~~ 107 (245)
T COG4555 69 -------------DPSFVRRKIGVLFGERGLYARLTARENLKYFARLNGL----------------------------SR 107 (245)
T ss_pred -------------ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhhh----------------------------hh
Confidence 123467889999988888875 999999873110000 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..+.+++.... +.+..+||-|+||||+|||||++||++++||||||+||..+.+.+.+.+.+
T Consensus 108 ~~~kari~~l~k~l~l~~~~---------~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q 178 (245)
T COG4555 108 KEIKARIAELSKRLQLLEYL---------DRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178 (245)
T ss_pred hHHHHHHHHHHHHhChHHHH---------HHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence 11223455555555554332 345667999999999999999999999999999999999999999887754
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+++|+.||.++.+ +.||++++|++|..
T Consensus 179 ~k~egr~viFSSH~m~EvealCDrvivlh~Gev 211 (245)
T COG4555 179 LKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEV 211 (245)
T ss_pred hhcCCcEEEEecccHHHHHHhhheEEEEecCcE
Confidence 699999999998655 59999999999974
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=342.07 Aligned_cols=213 Identities=25% Similarity=0.265 Sum_probs=164.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|+++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 11 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 84 (258)
T PRK14268 11 PQIKVENLNLWYG--EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP---- 84 (258)
T ss_pred eeEEEeeeEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc----
Confidence 3699999999996 45799999999999999999999999999999999999985 799999964321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|++|++.+|..|++||+.++.... +..
T Consensus 85 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------ 123 (258)
T PRK14268 85 -----------------DVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIH------------GAN------------ 123 (258)
T ss_pred -----------------cchHHHHhhhEEEEecCCccCcccHHHHHHHHHHHc------------CCC------------
Confidence 000112356799999999999999999997641100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++..... +........||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 194 (258)
T PRK14268 124 ----KKDLDGVVENALRSAALWDETS-----DRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIE 194 (258)
T ss_pred ----HHHHHHHHHHHHHHcCCCcchh-----hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHH
Confidence 0001124556677666532110 1113456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ++||++++|++|+.
T Consensus 195 ~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 231 (258)
T PRK14268 195 DLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGEL 231 (258)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998765 67999999999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=339.62 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=164.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 2 l~~~~l~~~~~--~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 68 (256)
T TIGR03873 2 LRLSRVSWSAG--GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL----------- 68 (256)
T ss_pred ceEEeEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC-----------
Confidence 78999999996 45799999999999999999999999999999999999999999999964432111
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+....++.++|++|++.++ ..|++||+.++..... .. .. ....
T Consensus 69 ------------~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~---------------------~~-~~~~ 112 (256)
T TIGR03873 69 ------------SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHR--SL---------------------WA-GDSP 112 (256)
T ss_pred ------------CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhh--hh---------------------cc-CCCH
Confidence 1112345699999998654 5799999987532100 00 00 0000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... ...+..||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 113 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 183 (256)
T TIGR03873 113 HDAAVVDRALARTELSHLA---------DRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183 (256)
T ss_pred HHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence 1123566777777665332 234567999999999999999999999999999999999999999988864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||+|++|++|+.
T Consensus 184 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 215 (256)
T TIGR03873 184 AATGVTVVAALHDLNLAASYCDHVVVLDGGRV 215 (256)
T ss_pred HhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCE
Confidence 489999999998876 68999999999875
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=321.60 Aligned_cols=172 Identities=33% Similarity=0.450 Sum_probs=149.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~---~~~---------- 67 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGV---PVS---------- 67 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCE---EHH----------
Confidence 4789999999743347999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
.. ....++.++|++|++.+|+.|++||+ +
T Consensus 68 ----------~~-~~~~~~~i~~~~q~~~~~~~tv~~~i--~-------------------------------------- 96 (178)
T cd03247 68 ----------DL-EKALSSLISVLNQRPYLFDTTLRNNL--G-------------------------------------- 96 (178)
T ss_pred ----------HH-HHHHHhhEEEEccCCeeecccHHHhh--c--------------------------------------
Confidence 00 11235679999999999988999887 0
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..||||||||++||||++++|++|||||||++||+.+.+.+.+.|++
T Consensus 97 -------------------------------~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~ 145 (178)
T cd03247 97 -------------------------------RRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL 145 (178)
T ss_pred -------------------------------ccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc
Confidence 12999999999999999999999999999999999999999998875
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++|+|++||+.+.+..||++++|++|+.
T Consensus 146 ~~~tii~~sh~~~~~~~~d~~~~l~~g~i 174 (178)
T cd03247 146 KDKTLIWITHHLTGIEHMDKILFLENGKI 174 (178)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEECCEE
Confidence 58999999999988888999999998863
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=334.02 Aligned_cols=207 Identities=27% Similarity=0.367 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
+.++||+++|++. .+++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|. ++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~---~~~----- 75 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ---PRK----- 75 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCE---ECC-----
Confidence 6799999999864 2679999999999999999999999999999999999999 99999999543 221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
....++.++|+||++.+|.+ |++||+.++.........
T Consensus 76 ------------------~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~----------------------- 114 (226)
T cd03234 76 ------------------PDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKS----------------------- 114 (226)
T ss_pred ------------------hHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhccccc-----------------------
Confidence 01345679999999999986 999999864211000000
Q ss_pred cCCCCCChHHHHH-HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~-~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..........+ .++.+++.... ......||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 115 --~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~ 183 (226)
T cd03234 115 --SDAIRKKRVEDVLLRDLALTRIG---------GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLV 183 (226)
T ss_pred --chHHHHHHHHHHHHHhhcchhhh---------cccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHH
Confidence 00000011222 45554443221 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
+.+++ .|+|+|++||+. ++.+.||++++|++|+.
T Consensus 184 ~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 222 (226)
T cd03234 184 STLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEI 222 (226)
T ss_pred HHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEE
Confidence 98864 589999999997 46789999999999864
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=339.90 Aligned_cols=217 Identities=23% Similarity=0.273 Sum_probs=163.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~---------- 68 (252)
T TIGR03005 1 VRFSDVTKRFG--ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP---------- 68 (252)
T ss_pred CEEEEEEEEeC--CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc----------
Confidence 47899999996 357999999999999999999999999999999999999999999999654321110
Q ss_pred hcccccc--cchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 579 VNSQNMN--GELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 579 ~~~~~~~--~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+++-. ..........++.++|++|++.+|. .|+.||+.++.... .+. .
T Consensus 69 --~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~-----------~~~----------------~ 119 (252)
T TIGR03005 69 --GRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV-----------LGM----------------A 119 (252)
T ss_pred --cccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh-----------cCC----------------C
Confidence 00000 0000011133567999999999885 79999998742100 000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.+.++.+++.... ...+.+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 120 ~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~ 190 (252)
T TIGR03005 120 RAEAEKRAMELLDMVGLADKA---------DHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIR 190 (252)
T ss_pred HHHHHHHHHHHHHHcCChhHh---------hcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 000123456677776664332 23456799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 191 ~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T TIGR03005 191 RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRI 225 (252)
T ss_pred HHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 4 389999999998765 68999999999875
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=337.75 Aligned_cols=214 Identities=26% Similarity=0.266 Sum_probs=164.0
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 3 ~~l~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~--- 77 (252)
T PRK14256 3 NKVKLEQLNVHFG--KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRG--- 77 (252)
T ss_pred cEEEEEEEEEEeC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEccccc---
Confidence 4699999999996 3579999999999999999999999999999999999986 4 6899999654321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......++.++|+||++.+|. .|++||+.++......
T Consensus 78 ------------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~------------------------ 115 (252)
T PRK14256 78 ------------------VDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGR------------------------ 115 (252)
T ss_pred ------------------CChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCC------------------------
Confidence 011134567999999999997 5999999764210000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......++.+.++++.+++..... +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 116 ---~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 187 (252)
T PRK14256 116 ---VNRSEADEIVESSLKRVALWDEVK-----DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKI 187 (252)
T ss_pred ---CCHHHHHHHHHHHHHHcCCchhhh-----HHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 000001133556666666542111 011334678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ ++||++++|++|+.
T Consensus 188 ~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 188 EELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDL 225 (252)
T ss_pred HHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 998875 478999999998765 78999999999875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=329.19 Aligned_cols=201 Identities=24% Similarity=0.319 Sum_probs=160.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~---------- 63 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQS---HT---------- 63 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE---cc----------
Confidence 468999999952 4689999999999999999999999999999999999999999996433 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++||+|++.+|.. |+.||+.++...... ...
T Consensus 64 ------------~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~----------------------------~~~ 103 (213)
T TIGR01277 64 ------------GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK----------------------------LNA 103 (213)
T ss_pred ------------cCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC----------------------------ccH
Confidence 001234679999999999974 999999764210000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
....++.++++.+++....+ ....+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~ 174 (213)
T TIGR01277 104 EQQEKVVDAAQQVGIADYLD---------RLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQL 174 (213)
T ss_pred HHHHHHHHHHHHcCcHHHhh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 11235566778777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+.+.+ ..||++++|++|+.
T Consensus 175 ~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i 207 (213)
T TIGR01277 175 CSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207 (213)
T ss_pred HHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeE
Confidence 389999999998765 67999999998864
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=336.71 Aligned_cols=213 Identities=22% Similarity=0.253 Sum_probs=163.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+..+..
T Consensus 4 ~l~~~~l~~~~~--~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~---- 77 (251)
T PRK14249 4 KIKIRGVNFFYH--KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN---- 77 (251)
T ss_pred eEEEEEEEEEEC--CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccc----
Confidence 589999999996 357999999999999999999999999999999999999997 699999644321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++||||++.+|+.|++||+.++.......
T Consensus 78 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------- 115 (251)
T PRK14249 78 -----------------LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTT------------------------- 115 (251)
T ss_pred -----------------cChHHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCC-------------------------
Confidence 01123467799999999999999999998752100000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 116 --~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 188 (251)
T PRK14249 116 --AQSRLDEVVEKSLRQAALWDEVK-----DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEE 188 (251)
T ss_pred --hhhHHHHHHHHHHHHhCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 00001123444455555432111 11234567899999999999999999999999999999999999999998
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 189 ~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 189 LMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDL 224 (251)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeE
Confidence 8865 589999999998765 67899999999875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=347.40 Aligned_cols=205 Identities=20% Similarity=0.273 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~---~~~--------- 67 (301)
T TIGR03522 2 SIRVSSLTKLYG--TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGE---DVL--------- 67 (301)
T ss_pred EEEEEEEEEEEC--CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---Ecc---------
Confidence 388999999996 467999999999999999999999999999999999999999999999643 331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....++.+||+||++.+|.. |+.||+.+.... .+. ..
T Consensus 68 --------~----~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~------------~~~----------------~~ 107 (301)
T TIGR03522 68 --------Q----NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGI------------YGM----------------KG 107 (301)
T ss_pred --------c----ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHH------------cCC----------------CH
Confidence 0 011335679999999999975 999999763100 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... +.....||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++
T Consensus 108 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~ 178 (301)
T TIGR03522 108 QLLKQRVEEMIELVGLRPEQ---------HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKN 178 (301)
T ss_pred HHHHHHHHHHHHHCCCchHh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 00123456677777665432 234567999999999999999999999999999999999999999998875
Q ss_pred --cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.++|+|++||+++. .+.||||++|++|+.
T Consensus 179 ~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i 210 (301)
T TIGR03522 179 IGKDKTIILSTHIMQEVEAICDRVIIINKGKI 210 (301)
T ss_pred hcCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 578999999999975
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-39 Score=337.71 Aligned_cols=214 Identities=25% Similarity=0.294 Sum_probs=163.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+..+.
T Consensus 2 ~~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~---- 75 (250)
T PRK14240 2 GKISVKDLDLFYG--DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKS---- 75 (250)
T ss_pred CeEEEEEEEEEEC--CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc----
Confidence 3699999999996 35799999999999999999999999999999999999863 699999964432110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..+....++.++|++|++.+|+.|+.||+.++.... +..+
T Consensus 76 -----------------~~~~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~------------~~~~----------- 115 (250)
T PRK14240 76 -----------------DIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTH------------GIKD----------- 115 (250)
T ss_pred -----------------ccchHHHhccEEEEecCCccCcccHHHHHHHHHHhc------------CCCC-----------
Confidence 001113456799999999999999999998742100 0000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.++++.+++...+. +..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 ----~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 186 (250)
T PRK14240 116 ----KKKLDEIVEKSLKGAALWDEVK-----DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIE 186 (250)
T ss_pred ----HHHHHHHHHHHHHHcCCchhhH-----HHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 0001233445566555431110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 187 ~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 187 ELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred HHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 98875 579999999998754 67999999999875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=344.37 Aligned_cols=207 Identities=25% Similarity=0.303 Sum_probs=161.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
.++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 26 ~~~~~~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~----------- 92 (269)
T cd03294 26 SKEEILKKTG--QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMS----------- 92 (269)
T ss_pred hhhhhhhhcC--CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccC-----------
Confidence 5778999995 467999999999999999999999999999999999999999999999654322110
Q ss_pred cccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 580 NSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 580 ~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
..... ..+++++|+||++.+|. .|++||+.++.... +. ...
T Consensus 93 ---------~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~ 135 (269)
T cd03294 93 ---------RKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ------------GV----------------PRA 135 (269)
T ss_pred ---------hhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhc------------CC----------------CHH
Confidence 00000 12356999999999985 69999997641100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++....+ ....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|.+
T Consensus 136 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~ 206 (269)
T cd03294 136 EREERAAEALELVGLEGWEH---------KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRL 206 (269)
T ss_pred HHHHHHHHHHHHcCCHhHhh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence 01234566777777654322 33567999999999999999999999999999999999999999998754
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .+.||++++|++|+.
T Consensus 207 ~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i 239 (269)
T cd03294 207 QAELQKTIVFITHDLDEALRLGDRIAIMKDGRL 239 (269)
T ss_pred HHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 38999999999876 478999999999864
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=317.76 Aligned_cols=167 Identities=29% Similarity=0.492 Sum_probs=144.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~---~~---------- 65 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKD---IK---------- 65 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE---cc----------
Confidence 468999999963 469999999999999999999999999999999999999999999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .+ ...++.++|++|++.+|.+ |++||+.
T Consensus 66 -------~---~~-~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------- 95 (173)
T cd03230 66 -------K---EP-EEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------- 95 (173)
T ss_pred -------c---ch-HhhhccEEEEecCCccccCCcHHHHhh---------------------------------------
Confidence 0 01 1335679999999988865 7777651
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 96 ----------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~ 141 (173)
T cd03230 96 ----------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLREL 141 (173)
T ss_pred ----------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 737 --AGITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
+|.|+|++||+.+.+. .||++++|++|+
T Consensus 142 ~~~g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 142 KKEGKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HHCCCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 4799999999987654 899999999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=349.96 Aligned_cols=213 Identities=23% Similarity=0.333 Sum_probs=164.0
Q ss_pred cEEEeeeEEEcCCC--------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccccc
Q 040758 498 LLDIEDLTLKTPTS--------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~ 569 (788)
.|+++||++.|+.. ...+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~- 83 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD- 83 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC-
Confidence 59999999999631 246899999999999999999999999999999999999999999999654322211
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
....+..|+.|+||||+|. |+. .|+.+|+..+..... +
T Consensus 84 -------------------~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~-----------~--------- 124 (327)
T PRK11308 84 -------------------PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT-----------S--------- 124 (327)
T ss_pred -------------------HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc-----------C---------
Confidence 0111234567999999984 554 488888754210000 0
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
.......+.+.++++.+++... . ...++.+||||||||++|||||+.+|++||+||||++||..+
T Consensus 125 -------~~~~~~~~~~~~~l~~~gL~~~-----~---~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~ 189 (327)
T PRK11308 125 -------LSAAERREKALAMMAKVGLRPE-----H---YDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSV 189 (327)
T ss_pred -------CCHHHHHHHHHHHHHHCCCChH-----H---hcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHH
Confidence 0000112456778888877420 1 123467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
...+.+.|.+ .|.|+|+|||+++.+. .||+|++|.+|+.
T Consensus 190 ~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~i 233 (327)
T PRK11308 190 QAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRC 233 (327)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999998854 4899999999998874 7999999999865
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=305.53 Aligned_cols=212 Identities=27% Similarity=0.370 Sum_probs=169.4
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++++++..+.. .-.+|++++|.|++||.+|||||||||||||+-+++|+.+|++|+|.+.|.+...+.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ld------- 78 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLD------- 78 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcC-------
Confidence 47888888776542 335899999999999999999999999999999999999999999999655443331
Q ss_pred hhhhcccccccchhcccccC-cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
+.....+ .+++|||||...|.+ .|-.||+..|..-.. +
T Consensus 79 -------------Ed~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---------------------------e 118 (228)
T COG4181 79 -------------EDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---------------------------E 118 (228)
T ss_pred -------------HHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---------------------------C
Confidence 1111223 367999999998874 699999988632210 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+...+.|+.+|++.-+ ..++.+|||||+|||||||||...|++|+-||||-+||.+|-.+|.+.
T Consensus 119 -~~~~~~~~A~~lL~~vGLg~Rl---------~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDL 188 (228)
T COG4181 119 -SSADSRAGAKALLEAVGLGKRL---------THYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADL 188 (228)
T ss_pred -ccccHHHHHHHHHHHhCccccc---------ccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHH
Confidence 0111224466788888876432 345678999999999999999999999999999999999999999887
Q ss_pred HH----hcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 734 IE----AAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~----~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
|- +.|.|.|++|||+.+...|||++.|.+|+..
T Consensus 189 lF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~ 225 (228)
T COG4181 189 LFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLV 225 (228)
T ss_pred HHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceec
Confidence 63 3699999999999999999999999999753
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=337.42 Aligned_cols=213 Identities=23% Similarity=0.276 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL---WSD--GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl---~~p--~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.+....
T Consensus 3 ~l~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~----- 75 (250)
T PRK14245 3 KIDARDVNFWYG--DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDK----- 75 (250)
T ss_pred EEEEEEEEEEEC--CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccc-----
Confidence 589999999996 35799999999999999999999999999999999997 454 589999964332110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|+||++.+|..|+.||+.++..... ..
T Consensus 76 ----------------~~~~~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~------------~~------------- 114 (250)
T PRK14245 76 ----------------GVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNG------------VK------------- 114 (250)
T ss_pred ----------------cccHHHHhhheEEEecCCccCcccHHHHHHHHHHHcC------------CC-------------
Confidence 0011134567999999999998999999976421000 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 115 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 187 (250)
T PRK14245 115 --DNAFIRQRVEETLKGAALWDEVK-----DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEE 187 (250)
T ss_pred --cHHHHHHHHHHHHHHcCCCcchh-----hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 00001234556677666642111 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 188 ~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~ 223 (250)
T PRK14245 188 LIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEM 223 (250)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 9875 579999999998765 78999999999865
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-39 Score=337.31 Aligned_cols=213 Identities=24% Similarity=0.300 Sum_probs=162.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14239 5 ILQVSDLSVYYN--KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR---- 78 (252)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcc----
Confidence 599999999996 3579999999999999999999999999999999999954 6 5999999643221100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+++.++||||++.+|+.|++||+.++.... +..
T Consensus 79 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 116 (252)
T PRK14239 79 -----------------TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLK------------GIK------------- 116 (252)
T ss_pred -----------------cchHhhhhcEEEEecCCccCcCcHHHHHHHHHHHc------------CCC-------------
Confidence 01113456799999999999999999997641100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....++++.++++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 117 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14239 117 --DKQVLDEAVEKSLKGASIWDEVK-----DRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189 (252)
T ss_pred --cHHHHHHHHHHHHHHcCCchhHH-----HHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHH
Confidence 00001233455566655431110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++. .+.||++++|++|+.
T Consensus 190 ~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225 (252)
T ss_pred HHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 47899999999875 468999999999864
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=321.00 Aligned_cols=209 Identities=26% Similarity=0.347 Sum_probs=171.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+..+|+.++|. ++++++|+||+|++||++++.|||||||||.+.++.|+.+|++|+|.+|+.|...+.
T Consensus 4 ~L~a~~l~K~y~--kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lP--------- 72 (243)
T COG1137 4 TLVAENLAKSYK--KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP--------- 72 (243)
T ss_pred EEEehhhhHhhC--CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCC---------
Confidence 588999999995 678999999999999999999999999999999999999999999999765544432
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
-..+.|..|||+|||+.+|.+ ||+|||..--.-.+. .+..
T Consensus 73 -------------m~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~--------------------------d~~~ 113 (243)
T COG1137 73 -------------MHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK--------------------------DLKK 113 (243)
T ss_pred -------------hHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc--------------------------chhH
Confidence 123457789999999999976 999999642100000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH--
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-- 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-- 734 (788)
....+++.+.|+++++.++.+. .+..||||||.|+.|||||..+|++++||||++++||.+...|++.+
T Consensus 114 ~~~~~~l~~LL~ef~i~hlr~~---------~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~ 184 (243)
T COG1137 114 AERKEELDALLEEFHITHLRDS---------KAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKH 184 (243)
T ss_pred HHHHHHHHHHHHHhchHHHhcC---------cccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence 1223457788888888766543 46789999999999999999999999999999999999999888765
Q ss_pred -HhcCCEEEEEecC-cchhhcCCEEEEEccCCC
Q 040758 735 -EAAGITYISVGHR-RTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~~g~TvI~IaHr-~~~~~~~D~Ilvl~~g~~ 765 (788)
+..|.-|++.-|. .+++..|||.+++.+|+.
T Consensus 185 L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~v 217 (243)
T COG1137 185 LKDRGIGVLITDHNVRETLDICDRAYIISDGKV 217 (243)
T ss_pred HHhCCceEEEccccHHHHHhhhheEEEEecCeE
Confidence 4579999999999 589999999999999975
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=337.02 Aligned_cols=214 Identities=24% Similarity=0.275 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (253)
T PRK14267 4 AIETVNLRVYYG--SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD---- 77 (253)
T ss_pred eEEEEeEEEEeC--CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc----
Confidence 589999999996 35799999999999999999999999999999999999987 4999999654321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....++++++|++|++.+|.. |+.||+.++......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~------------------------- 115 (253)
T PRK14267 78 -----------------VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL------------------------- 115 (253)
T ss_pred -----------------cChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-------------------------
Confidence 0111245679999999999975 999999764210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. .......+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 116 ~-~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 189 (253)
T PRK14267 116 V-KSKKELDERVEWALKKAALWDEVK-----DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIE 189 (253)
T ss_pred c-CCHHHHHHHHHHHHHHcCCccchh-----hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 0 000001134556677666532110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ .+||+|++|++|+.
T Consensus 190 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 226 (253)
T PRK14267 190 ELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKL 226 (253)
T ss_pred HHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEE
Confidence 98875 479999999998764 67999999999875
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=334.97 Aligned_cols=213 Identities=24% Similarity=0.293 Sum_probs=159.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~-------- 70 (243)
T TIGR01978 1 LKIKDLHVSVE--DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELE-------- 70 (243)
T ss_pred CeEeeEEEEEC--CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCC--------
Confidence 47899999996 45799999999999999999999999999999999999 4799999999654322110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....+..++|++|++.+|.+ |++||+.+....... + ... . ...
T Consensus 71 --------------~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~------~--~~~-~------------~~~ 115 (243)
T TIGR01978 71 --------------PDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRS------A--RGE-E------------PLD 115 (243)
T ss_pred --------------HHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhc------c--ccc-c------------ccc
Confidence 001123459999999999875 899998753110000 0 000 0 000
Q ss_pred CCCChHHHHHHHHhccccc-ccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....+.+.++++.+++.. .. ..... .||||||||++|||||+.+|++|||||||++||+.+.+.+.+.
T Consensus 116 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 186 (243)
T TIGR01978 116 LLDFLKLLKAKLALLGMDEEFL---------NRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEG 186 (243)
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------ccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHH
Confidence 0001234566777776642 21 12233 4999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 187 l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 187 INRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred HHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 865 4899999999998764 5 899999999864
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=317.16 Aligned_cols=169 Identities=32% Similarity=0.578 Sum_probs=144.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++.+.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~----------- 69 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL----------- 69 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc-----------
Confidence 468999999974323699999999999999999999999999999999999999999999964322111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+....++.++|++|++.+|+.|+.||+
T Consensus 70 ------------~~~~~~~~i~~~~~~~~~~~~t~~e~l----------------------------------------- 96 (171)
T cd03228 70 ------------DLESLRKNIAYVPQDPFLFSGTIRENI----------------------------------------- 96 (171)
T ss_pred ------------CHHHHHhhEEEEcCCchhccchHHHHh-----------------------------------------
Confidence 111234679999999988877776653
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+
T Consensus 97 ---------------------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~ 143 (171)
T cd03228 97 ---------------------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA 143 (171)
T ss_pred ---------------------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999998865
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.++|+|++||+++.+..||++++|++|+
T Consensus 144 ~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 144 KGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 4799999999988776699999999874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=324.00 Aligned_cols=193 Identities=32% Similarity=0.404 Sum_probs=157.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||++.|+ ++++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 1 l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~---------- 65 (201)
T cd03231 1 LEADELTCERD--GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGP---LD---------- 65 (201)
T ss_pred CEEEEEEEEeC--CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEe---cc----------
Confidence 47899999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. .....+++++|++|++.++ +.|++||+.+....
T Consensus 66 ----------~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------------------------- 100 (201)
T cd03231 66 ----------F-QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD---------------------------------- 100 (201)
T ss_pred ----------c-ccHHhhhheEEeccccccCCCcCHHHHHHhhccc----------------------------------
Confidence 0 0013456799999999887 57999999774211
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 101 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 101 HSDEQVEEALARVGLNGFE---------DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred ccHHHHHHHHHHcCChhhh---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 0124556667777665322 223567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCc-chhhcCCEEEEE
Q 040758 737 --AGITYISVGHRR-TLYDFHKRVLRI 760 (788)
Q Consensus 737 --~g~TvI~IaHr~-~~~~~~D~Ilvl 760 (788)
.|+|+|++||+. ....+|++++++
T Consensus 172 ~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 172 CARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HhCCCEEEEEecCchhhhhccceeEec
Confidence 589999999985 567899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=339.67 Aligned_cols=210 Identities=22% Similarity=0.310 Sum_probs=164.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 7 ~l~i~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~---------- 74 (265)
T PRK10253 7 RLRGEQLTLGYG--KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHY---------- 74 (265)
T ss_pred EEEEEEEEEEEC--CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhC----------
Confidence 699999999996 35799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+....++.++|+||++.+|. .|++||+.++..... +.. ....
T Consensus 75 -------------~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~--------------~~~----------~~~~ 117 (265)
T PRK10253 75 -------------ASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQ--------------PLF----------TRWR 117 (265)
T ss_pred -------------CHHHHhhheEEeeccCcCCCCCcHHHHHHhCccccc--------------ccc----------cCCC
Confidence 11122356999999998875 699999987531100 000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+..||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~ 188 (265)
T PRK10253 118 KEDEEAVTKAMQATGITHLA---------DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188 (265)
T ss_pred HHHHHHHHHHHHHcCCHHHh---------cCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence 01123456777777665332 234677999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||++++|++|+.
T Consensus 189 l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i 222 (265)
T PRK10253 189 LNREKGYTLAAVLHDLNQACRYASHLIALREGKI 222 (265)
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999875 578999999999874
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=338.06 Aligned_cols=214 Identities=22% Similarity=0.273 Sum_probs=163.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~ 571 (788)
.+|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|. ++..
T Consensus 11 ~~l~i~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~---~~~~-- 83 (259)
T PRK14274 11 EVYQINGMNLWYG--QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS---NILK-- 83 (259)
T ss_pred ceEEEeeEEEEEC--CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE---Eccc--
Confidence 3699999999996 3579999999999999999999999999999999999997 3 6999999644 3210
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. .......++.++|+||++.+|..|++||+.++......
T Consensus 84 ----------~------~~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~------------------------- 122 (259)
T PRK14274 84 ----------G------KVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGT------------------------- 122 (259)
T ss_pred ----------c------ccCHHHHhhceEEEecCCcccccCHHHHHHhHHHhcCC-------------------------
Confidence 0 00111235679999999999999999999874210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 123 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 195 (259)
T PRK14274 123 --KNKKKLQEIVEKSLKDVALWDEVK-----DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195 (259)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 000001123445566665532110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|+|||+++.+ +.||++++|++|+.
T Consensus 196 ~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 232 (259)
T PRK14274 196 ELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGEL 232 (259)
T ss_pred HHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998764 68999999999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=349.41 Aligned_cols=215 Identities=20% Similarity=0.254 Sum_probs=162.2
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||++.|+..+ ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+...+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~--- 79 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRIS--- 79 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCC---
Confidence 489999999997422 369999999999999999999999999999999999998 48999999655432221
Q ss_pred Cccchhhhcccccccchhccccc-CcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
...... .++.|+||||++. ++. .|+.+++...... .
T Consensus 80 -----------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~------------~----------- 119 (326)
T PRK11022 80 -----------------EKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV------------H----------- 119 (326)
T ss_pred -----------------HHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH------------h-----------
Confidence 001111 2346999999985 333 4777666431000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.........+.+.++|+.+++..... ....++.+|||||||||+|||||+.+|++|||||||++||+.++
T Consensus 120 ----~~~~~~~~~~~~~~~L~~~gL~~~~~------~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~ 189 (326)
T PRK11022 120 ----QGGNKKTRRQRAIDLLNQVGIPDPAS------RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQ 189 (326)
T ss_pred ----cCCCHHHHHHHHHHHHHHCCCCChHH------HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 00000012345677888887753211 12345778999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ ++||+|++|.+|+.
T Consensus 190 ~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~i 232 (326)
T PRK11022 190 AQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQV 232 (326)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999988754 489999999999876 68999999999864
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=349.24 Aligned_cols=216 Identities=25% Similarity=0.345 Sum_probs=163.3
Q ss_pred CcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++|+++.|+.+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+...+.
T Consensus 11 ~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~--- 87 (330)
T PRK09473 11 ALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP--- 87 (330)
T ss_pred ceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC---
Confidence 369999999999632 246999999999999999999999999999999999999996 999999654432221
Q ss_pred CccchhhhcccccccchhcccccCc-ceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNS-RGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+..| +.|+||||++ .++. .|+.+|+..+..... +
T Consensus 88 -----------------~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~-----------~---------- 129 (330)
T PRK09473 88 -----------------EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK-----------G---------- 129 (330)
T ss_pred -----------------HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc-----------C----------
Confidence 01111223 4799999998 4544 588888754210000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.......+.+.+.|+.+++.. +.+..+.++.+||||||||++|||||+.+|++||+|||||+||+.+.
T Consensus 130 ------~~~~~~~~~~~~~L~~vgL~~------~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~ 197 (330)
T PRK09473 130 ------MSKAEAFEESVRMLDAVKMPE------ARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQ 197 (330)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCC------hHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHH
Confidence 000001234566777776642 11223456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ +.||+|++|.+|+.
T Consensus 198 ~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 198 AQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred HHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999988753 389999999999876 57999999999864
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=336.52 Aligned_cols=213 Identities=24% Similarity=0.297 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+|+|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~----- 76 (251)
T PRK14251 4 IISAKDVHLSYG--NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS----- 76 (251)
T ss_pred eEEEEeeEEEEC--CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccc-----
Confidence 589999999996 3579999999999999999999999999999999999997 4799999964432110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|++|++.+|..|++||+.++.... +..+
T Consensus 77 ----------------~~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~------------~~~~------------ 116 (251)
T PRK14251 77 ----------------KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIA------------GVKD------------ 116 (251)
T ss_pred ----------------cchHHHhhccEEEEecCCccCCCcHHHHHHHHHHHc------------CCCC------------
Confidence 001113456799999999999999999998642100 0000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.++++.+++..... +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 117 ---~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14251 117 ---KELIDQRVEESLKQAAIWKETK-----DNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEE 188 (251)
T ss_pred ---HHHHHHHHHHHHHHcCCCcchH-----HHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHH
Confidence 0001133455666665531100 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|+|||+++.+ +.||+|++|++|+.
T Consensus 189 ~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 224 (251)
T PRK14251 189 TLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDL 224 (251)
T ss_pred HHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEE
Confidence 8875 479999999998764 67999999999875
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=336.17 Aligned_cols=213 Identities=23% Similarity=0.300 Sum_probs=164.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~---~~~---- 73 (250)
T PRK14262 3 IIEIENFSAYYG--EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ---DIY---- 73 (250)
T ss_pred eEEEEeeEEEeC--CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE---Ecc----
Confidence 589999999996 35799999999999999999999999999999999999984 8999999643 221
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.. ......+++.++|++|++.+|..|++||+.++..... .
T Consensus 74 --------~~------~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~------------~-------------- 113 (250)
T PRK14262 74 --------DP------QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHG------------V-------------- 113 (250)
T ss_pred --------cc------hhhHHHhhhhEEEEecCCccCcccHHHHHHHHHHHcC------------C--------------
Confidence 00 0011133567999999999999999999976421000 0
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 114 -~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~ 187 (250)
T PRK14262 114 -KSKHKLDRIVEESLKKAALWDEVK-----SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEK 187 (250)
T ss_pred -CcHHHHHHHHHHHHHHcCCCchhH-----HHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHH
Confidence 000001233455666665532111 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.+ .++|+|++||+++. ..+||++++|++|+.
T Consensus 188 ~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 188 LLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred HHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 8865 47999999999875 578999999999875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=330.04 Aligned_cols=202 Identities=25% Similarity=0.345 Sum_probs=160.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ .. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~---------- 66 (232)
T PRK10771 1 MLKLTDITWLYHH--LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT---------- 66 (232)
T ss_pred CeEEEEEEEEECC--cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC----------
Confidence 3789999999963 22 499999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ..++.++|+||++.+|.. |+.||+.++.... .. ..
T Consensus 67 -------------~--~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~-~~---------------------------~~ 103 (232)
T PRK10771 67 -------------P--PSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG-LK---------------------------LN 103 (232)
T ss_pred -------------C--hhhccEEEEecccccccCCcHHHHHhcccccc-cC---------------------------CC
Confidence 0 113569999999999975 9999998752110 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.++++.++++...+ .....||||||||++||||++++|+++||||||++||+.+.+.+.+.|++
T Consensus 104 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 104 AAQREKLHAIARQMGIEDLLA---------RLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred HHHHHHHHHHHHHcCcHHHHh---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011345677788777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 175 ~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 208 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAARIAPRSLVVADGRI 208 (232)
T ss_pred HHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 389999999999865 67999999999864
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=355.10 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=158.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++++...|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 29 ~~~~~~~~~~~--~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~---------- 96 (400)
T PRK10070 29 LSKEQILEKTG--LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKIS---------- 96 (400)
T ss_pred ccHHHHHhhcC--CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCC----------
Confidence 34444444442 224899999999999999999999999999999999999999999999654332211
Q ss_pred hcccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 579 VNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..... ..+++++||+|++.+|. .|++||+.++.... +. ..
T Consensus 97 ----------~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~------------~~----------------~~ 138 (400)
T PRK10070 97 ----------DAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA------------GI----------------NA 138 (400)
T ss_pred ----------HHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc------------CC----------------CH
Confidence 00011 12357999999999996 59999998752100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++||||||||+||+.+...+++.|.+
T Consensus 139 ~~~~~~~~e~L~~~gL~~~~~---------~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~ 209 (400)
T PRK10070 139 EERREKALDALRQVGLENYAH---------SYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVK 209 (400)
T ss_pred HHHHHHHHHHHHHcCCChhhh---------cCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence 011245667788877754332 34567999999999999999999999999999999999999999998853
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. .++||+|++|++|+.
T Consensus 210 l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i 243 (400)
T PRK10070 210 LQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEV 243 (400)
T ss_pred HHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 478999999999874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.25 Aligned_cols=197 Identities=26% Similarity=0.308 Sum_probs=160.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 l~l~~v~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---~~~---------- 65 (223)
T TIGR03740 1 LETKNLSKRFG--KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH---PWT---------- 65 (223)
T ss_pred CEEEeEEEEEC--CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ecc----------
Confidence 46899999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.. . ++.++|+||++.+|. .|++||+.++.... .
T Consensus 66 ------------~~-~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~--------------------------------~ 99 (223)
T TIGR03740 66 ------------RK-D-LHKIGSLIESPPLYENLTARENLKVHTTLL--------------------------------G 99 (223)
T ss_pred ------------cc-c-cccEEEEcCCCCccccCCHHHHHHHHHHHc--------------------------------C
Confidence 00 1 246999999998886 59999997531100 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
....++.+.++.++++...+ .....||||||||++||||++.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 100 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~ 170 (223)
T TIGR03740 100 LPDSRIDEVLNIVDLTNTGK---------KKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSF 170 (223)
T ss_pred CCHHHHHHHHHHcCCcHHHh---------hhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHH
Confidence 11245566777776653322 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ ..||++++|++|+.
T Consensus 171 ~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i 202 (223)
T TIGR03740 171 PEQGITVILSSHILSEVQQLADHIGIISEGVL 202 (223)
T ss_pred HHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEE
Confidence 589999999998765 68999999999875
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=332.84 Aligned_cols=203 Identities=25% Similarity=0.358 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 i~i~~l~~~~~--~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~---~~~---------- 65 (237)
T TIGR00968 1 IEIANISKRFG--SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQ---DAT---------- 65 (237)
T ss_pred CEEEEEEEEEC--CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---EcC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999643 221
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.++|+||++.+|.+ |+.||+.+....... ...
T Consensus 66 ------------~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~----------------------------~~~ 105 (237)
T TIGR00968 66 ------------RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKH----------------------------PKA 105 (237)
T ss_pred ------------cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcCC----------------------------CHH
Confidence 001124579999999999975 999999864211000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+|||||+||++|||||+++|+++||||||++||++++..+.+.|.+
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~ 176 (237)
T TIGR00968 106 KIKARVEELLELVQLEGLGD---------RYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKL 176 (237)
T ss_pred HHHHHHHHHHHHcCCHhHhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777766643222 23467999999999999999999999999999999999999999998864
Q ss_pred --c-CCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
. ++|+|++||+++. .+.||++++|++|+.
T Consensus 177 ~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 177 HDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred HHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 3 8999999999876 577999999999875
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=334.26 Aligned_cols=212 Identities=24% Similarity=0.261 Sum_probs=163.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 6 ~i~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 79 (253)
T PRK14261 6 ILSTKNLNLWYG--EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG---- 79 (253)
T ss_pred eEEEeeeEEEEC--CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc----
Confidence 699999999996 45799999999999999999999999999999999999763 4899999643321110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+....++.++|++|++.+|+.|++||+.++..... ..+
T Consensus 80 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~------------~~~------------ 118 (253)
T PRK14261 80 -----------------ADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHG------------EKN------------ 118 (253)
T ss_pred -----------------cchhhhhceEEEEecCCccCcccHHHHHHhhHHhcC------------CCC------------
Confidence 011234567999999999999999999987521000 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
....++.+.++++.+++... +.+ .+..+..||||||||++|||||+.+|+++||||||++||+.+.+.+.
T Consensus 119 ---~~~~~~~~~~~l~~~~l~~~------l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~ 189 (253)
T PRK14261 119 ---KKTLDTIVEKSLKGAALWDE------VKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIE 189 (253)
T ss_pred ---HHHHHHHHHHHHHHhcCchh------hHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 00012334555665554321 111 24456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 190 ~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 190 DLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226 (253)
T ss_pred HHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 98875 468999999998765 68999999999864
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=337.75 Aligned_cols=215 Identities=25% Similarity=0.282 Sum_probs=164.7
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ +..
T Consensus 23 ~~~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~---i~~- 96 (272)
T PRK14236 23 QTALEVRNLNLFYG--DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQN---IYD- 96 (272)
T ss_pred CcEEEEEEEEEEEC--CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEE---Ccc-
Confidence 34799999999996 35799999999999999999999999999999999999984 89999996433 210
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. .......++.++|++|++.+|..|++||+.++.......
T Consensus 97 -----------~------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~----------------------- 136 (272)
T PRK14236 97 -----------K------KVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIN----------------------- 136 (272)
T ss_pred -----------c------ccCHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCC-----------------------
Confidence 0 001113456799999999999889999998642100000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+.+.++++.+++..... +..+..+..||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 137 ----~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 207 (272)
T PRK14236 137 ----NRRVLDEAVERSLRGAALWDEVK-----DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207 (272)
T ss_pred ----cHHHHHHHHHHHHHHcCCChhHH-----HHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH
Confidence 00001123455566555432110 012345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ +++|+|++||+++.+ +.||++++|++|+.
T Consensus 208 ~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 208 EELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred HHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 998865 479999999998764 68999999999875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=333.74 Aligned_cols=213 Identities=24% Similarity=0.265 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~---- 77 (251)
T PRK14270 4 KMESKNLNLWYG--EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD---- 77 (251)
T ss_pred EEEEEEeEEEEC--CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEeccccc----
Confidence 689999999996 35799999999999999999999999999999999999885 7999999644321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|++||+.++.... +..
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~------------~~~------------- 115 (251)
T PRK14270 78 -----------------VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH------------GIK------------- 115 (251)
T ss_pred -----------------ccHHHHHhheEEEecCCCcCCCcHHHHHHhHHHhc------------CCC-------------
Confidence 01112356799999999999999999998742100 000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++..... +........||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 116 --~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 188 (251)
T PRK14270 116 --DKKELDKIVEWALKKAALWDEVK-----DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIED 188 (251)
T ss_pred --cHHHHHHHHHHHHHHcCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00001123455666665532110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 189 ~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i 224 (251)
T PRK14270 189 LMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDL 224 (251)
T ss_pred HHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeE
Confidence 8875 479999999998764 67999999999875
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=334.63 Aligned_cols=213 Identities=25% Similarity=0.280 Sum_probs=163.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCCc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
-+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 6 ~~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~----- 78 (251)
T PRK14244 6 ASVKNLNLWYG--SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD----- 78 (251)
T ss_pred EEeeeEEEEEC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcc-----
Confidence 46899999996 4579999999999999999999999999999999999986 47999999654321110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.++|+||++.+|+.|+.||+.++....... .
T Consensus 79 ----------------~~~~~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~------------~------------- 117 (251)
T PRK14244 79 ----------------TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLA------------K------------- 117 (251)
T ss_pred ----------------cchHHHhhhEEEEecCcccccCCHHHHHHHHHHhcCCC------------C-------------
Confidence 01112456799999999999999999998641100000 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....++++.++++.+++..... +.....+..||||||||++|||||+++|++|||||||++||+.+...+.+.
T Consensus 118 -~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 191 (251)
T PRK14244 118 -NKKKLDEIVEKSLTSVGLWEELG-----DRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENL 191 (251)
T ss_pred -CHHHHHHHHHHHHHHcCCCchhh-----hHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 00001234556777776643110 011334677999999999999999999999999999999999999999998
Q ss_pred HHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 192 l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 192 IQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred HHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 865 589999999998765 57999999999875
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=337.36 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=162.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 23 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~---- 96 (271)
T PRK14238 23 VVFDTQNLNLWYG--EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDK---- 96 (271)
T ss_pred eEEEEeeeEEEEC--CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccc----
Confidence 3699999999996 3569999999999999999999999999999999999987 6999999964332100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.......++.++|+||++.+|..|+.||+.++........
T Consensus 97 -----------------~~~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~----------------------- 136 (271)
T PRK14238 97 -----------------SYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD----------------------- 136 (271)
T ss_pred -----------------cccHHHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCc-----------------------
Confidence 0011133567999999999998999999986421000000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.++++.+++.. ++.. ....+..||||||||++|||||+++|++|||||||++||+.+...+
T Consensus 137 ----~~~~~~~~~~~l~~~~~~~------~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l 206 (271)
T PRK14238 137 ----KKTLDEIVEKSLRGAAIWD------ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV 206 (271)
T ss_pred ----HHHHHHHHHHHHHHcCCcc------hHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 0000122334444443211 1111 2345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 207 ~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 244 (271)
T PRK14238 207 EELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYV 244 (271)
T ss_pred HHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 998865 479999999998765 68999999999875
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-38 Score=339.27 Aligned_cols=215 Identities=23% Similarity=0.231 Sum_probs=164.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
...|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+.....
T Consensus 37 ~~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~-- 112 (286)
T PRK14275 37 KPHVVAKNFSIYYG--EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKF-- 112 (286)
T ss_pred ceEEEEeeeEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcc--
Confidence 34699999999996 3569999999999999999999999999999999999864 49999999643211100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+++.++|++|++.+|+.|+.||+.++..... ..+
T Consensus 113 -------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~------------~~~---------- 151 (286)
T PRK14275 113 -------------------TDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHG------------IND---------- 151 (286)
T ss_pred -------------------cchHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcC------------CCc----------
Confidence 011124567999999999998899999987521000 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.....+.+.++++.+++...+. +.....+..||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 152 -----~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l 221 (286)
T PRK14275 152 -----KKQLEEIVEKSLRKAALWDEVS-----DRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKI 221 (286)
T ss_pred -----HHHHHHHHHHHHHHhCCccchh-----hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 0001133455666655431110 112345678999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 222 ~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i 259 (286)
T PRK14275 222 EDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVL 259 (286)
T ss_pred HHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999875 468999999998765 67999999999875
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=324.62 Aligned_cols=198 Identities=28% Similarity=0.323 Sum_probs=158.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 10 ~~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~---~i~-------- 76 (214)
T PRK13543 10 PLLAAHALAFSRN--EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGK---TAT-------- 76 (214)
T ss_pred ceEEEeeEEEecC--CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCE---Ecc--------
Confidence 3699999999996 357999999999999999999999999999999999999999999999543 221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ...++.++|++|++.++.. |+.||+.+..... +
T Consensus 77 --------------~-~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~------------~------------------ 111 (214)
T PRK13543 77 --------------R-GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH------------G------------------ 111 (214)
T ss_pred --------------c-hhhhhceEEeecCcccccCCcHHHHHHHHHHhc------------C------------------
Confidence 0 0123469999999998876 9999996531000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+.+.+.++.+++.... ......||||||||++||||++++|++|||||||++||+++.+.+.+.|+
T Consensus 112 -~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~ 181 (214)
T PRK13543 112 -RRAKQMPGSALAIVGLAGYE---------DTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMIS 181 (214)
T ss_pred -CcHHHHHHHHHHHcCChhhc---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 00123345566666654322 23356799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|++||+.+.+ ++||++++++.
T Consensus 182 ~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 182 AHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 4 589999999998754 78999999874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=345.36 Aligned_cols=196 Identities=22% Similarity=0.270 Sum_probs=155.5
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccccccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNG 586 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 586 (788)
+|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+ +. .
T Consensus 2 ~y~--~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~-----------------~ 59 (302)
T TIGR01188 2 VYG--DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYD---VV-----------------R 59 (302)
T ss_pred eeC--CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---cc-----------------c
Confidence 453 4579999999999999999999999999999999999999999999996433 21 0
Q ss_pred chhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHH
Q 040758 587 ELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665 (788)
Q Consensus 587 ~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 665 (788)
.....++.+||+||++.+|.. |++||+.+.... .+. ......+.+.+
T Consensus 60 ----~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------------~~~----------------~~~~~~~~~~~ 107 (302)
T TIGR01188 60 ----EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRL------------YGL----------------PKDEAEERAEE 107 (302)
T ss_pred ----CHHHHHhhcEEecCCCCCCCCCcHHHHHHHHHHH------------cCC----------------CHHHHHHHHHH
Confidence 001235679999999999875 999999763110 000 00001234667
Q ss_pred HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEE
Q 040758 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYI 742 (788)
Q Consensus 666 ~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI 742 (788)
+++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|
T Consensus 108 ~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi 178 (302)
T TIGR01188 108 LLELFELGEAA---------DRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178 (302)
T ss_pred HHHHcCChhHh---------CCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 78887765432 234567999999999999999999999999999999999999999988864 589999
Q ss_pred EEecCcchh-hcCCEEEEEccCCC
Q 040758 743 SVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 743 ~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++||+++.+ +.||+|++|++|+.
T Consensus 179 ~~sH~~~~~~~~~d~v~~l~~G~i 202 (302)
T TIGR01188 179 LTTHYMEEADKLCDRIAIIDHGRI 202 (302)
T ss_pred EECCCHHHHHHhCCEEEEEECCEE
Confidence 999998765 67999999999975
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=331.09 Aligned_cols=203 Identities=27% Similarity=0.349 Sum_probs=162.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 l~~~~l~~~~~--~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~----------- 67 (232)
T cd03300 1 IELENVSKFYG--GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL----------- 67 (232)
T ss_pred CEEEeEEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC-----------
Confidence 46899999996 35799999999999999999999999999999999999999999999964322111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ..++.++|++|++.+|.+ |++||+.++.... +. ...
T Consensus 68 ------------~--~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~------------~~----------------~~~ 105 (232)
T cd03300 68 ------------P--PHKRPVNTVFQNYALFPHLTVFENIAFGLRLK------------KL----------------PKA 105 (232)
T ss_pred ------------C--hhhcceEEEecccccCCCCcHHHHHHHHHHhc------------CC----------------CHH
Confidence 0 123569999999999965 9999997631100 00 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.++++...+ .....||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|++
T Consensus 106 ~~~~~~~~~l~~~~l~~~~~---------~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~ 176 (232)
T cd03300 106 EIKERVAEALDLVQLEGYAN---------RKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176 (232)
T ss_pred HHHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 11234566777777654332 23567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ +.||++++|++|+.
T Consensus 177 ~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 177 QKELGITFVFVTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred HHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 389999999998764 67999999999875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=347.53 Aligned_cols=201 Identities=22% Similarity=0.335 Sum_probs=160.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|++ ||+++|++ + .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~--------- 66 (352)
T PRK11144 1 MLEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAE--------- 66 (352)
T ss_pred CeEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccc---------
Confidence 3677 99999953 3 23 999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
........++.++||+|++.+|. .|++||+.|+...
T Consensus 67 ----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~--------------------------------- 103 (352)
T PRK11144 67 ----------KGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK--------------------------------- 103 (352)
T ss_pred ----------cccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------
Confidence 00011123567999999999996 5999999885311
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+++.+.++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 104 -~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 104 -SMVAQFDKIVALLGIEPLLD---------RYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred -hhHHHHHHHHHHcCCchhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 01245667777777654332 34577999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ...||++++|++|+.
T Consensus 174 l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i 207 (352)
T PRK11144 174 LAREINIPILYVSHSLDEILRLADRVVVLEQGKV 207 (352)
T ss_pred HHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 38999999999864 578999999999864
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=332.52 Aligned_cols=213 Identities=24% Similarity=0.286 Sum_probs=161.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--D---GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p---~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~---- 78 (252)
T PRK14255 5 IITSSDVHLFYG--KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN---- 78 (252)
T ss_pred eEEEEeEEEEEC--CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEccccc----
Confidence 699999999996 3579999999999999999999999999999999999975 5 5999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|++|++.+|..|+++|+.++.......
T Consensus 79 -----------------~~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~------------------------- 116 (252)
T PRK14255 79 -----------------EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVK------------------------- 116 (252)
T ss_pred -----------------ccHHHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCC-------------------------
Confidence 01113356799999999999999999997641100000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....++++.+.++.+++...+. +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 117 --~~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~ 189 (252)
T PRK14255 117 --DKAVLDEAVETSLKQAAIWDEVK-----DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIEN 189 (252)
T ss_pred --CHHHHHHHHHHHHHHcCCccchh-----hHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 00000123344555554421110 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .+.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 190 ~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 190 MLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred HHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 468999999998875 67999999999875
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=338.02 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=164.7
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCccccc
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDA 569 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~ 569 (788)
....|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+..+..
T Consensus 36 ~~~~l~i~~l~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~- 112 (285)
T PRK14254 36 GETVIEARDLNVFYG--DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD- 112 (285)
T ss_pred CCceEEEEEEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc-
Confidence 345799999999996 3579999999999999999999999999999999999997 68999999654321100
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.+....++.++|++|++.+|..|+.||+.++.... +.
T Consensus 113 --------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~------------~~----------- 149 (285)
T PRK14254 113 --------------------VDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQ------------GY----------- 149 (285)
T ss_pred --------------------cchHhhhccEEEEecCCccCcCCHHHHHHHHHHHc------------CC-----------
Confidence 01113456799999999999889999997641100 00
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...
T Consensus 150 ------~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~ 218 (285)
T PRK14254 150 ------DGDIDERVEESLRRAALWDEVK-----DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSK 218 (285)
T ss_pred ------cHHHHHHHHHHHHHcCCCchhH-----HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHH
Confidence 0001234566677666532110 11234567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEEE-EEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRVL-RISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~Il-vl~~g~~ 765 (788)
+.+.|++ .++|+|++||+++.+ .+|||++ +|++|+.
T Consensus 219 l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i 258 (285)
T PRK14254 219 IEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGEL 258 (285)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEE
Confidence 9998875 368999999998765 5799975 5688864
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=321.01 Aligned_cols=193 Identities=23% Similarity=0.351 Sum_probs=155.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~~~--~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~---~~~--------- 66 (200)
T PRK13540 1 MLDVIELDFDYH--DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQ---SIK--------- 66 (200)
T ss_pred CEEEEEEEEEeC--CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCC---ccc---------
Confidence 378999999996 357999999999999999999999999999999999999999999999543 331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. .....+++++|++|++.++ ..|++||+.++....
T Consensus 67 --------~----~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-------------------------------- 102 (200)
T PRK13540 67 --------K----DLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-------------------------------- 102 (200)
T ss_pred --------c----CHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC--------------------------------
Confidence 0 0012356799999999987 579999998742100
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.....+.+.++.+++....+ .....||||||||++||||++++|++|||||||++||+.+...+.+.|++
T Consensus 103 -~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~ 172 (200)
T PRK13540 103 -PGAVGITELCRLFSLEHLID---------YPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQE 172 (200)
T ss_pred -cchHHHHHHHHHcCCchhhh---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence 01124556666665543222 22456999999999999999999999999999999999999999998874
Q ss_pred ---cCCEEEEEecCcchhhcCCEEE
Q 040758 737 ---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.|+|+|++||+.+.+..||.-+
T Consensus 173 ~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 173 HRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHcCCEEEEEeCCchhccccchhh
Confidence 5899999999999988898754
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=325.33 Aligned_cols=203 Identities=27% Similarity=0.346 Sum_probs=157.0
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
+++ ||+++|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~---------- 65 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSR---------- 65 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccc----------
Confidence 445 89999963 334 99999999 999999999999999999999999999999999654321110
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...+....++.++|++|++.+|. .|++||+.++...... .
T Consensus 66 ---------~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~------------------------------~ 106 (214)
T cd03297 66 ---------KKINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRN------------------------------R 106 (214)
T ss_pred ---------chhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhCCH------------------------------H
Confidence 00011123567999999999986 5999999764211000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++
T Consensus 107 ~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 177 (214)
T cd03297 107 EDRISVDELLDLLGLDHLL---------NRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQI 177 (214)
T ss_pred HHHHHHHHHHHHcCCHhHh---------hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence 0123456677776654322 234677999999999999999999999999999999999999999998864
Q ss_pred --c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ |+|+|++||+.+.+ ..||++++|++|+.
T Consensus 178 ~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 210 (214)
T cd03297 178 KKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRL 210 (214)
T ss_pred HHHcCcEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 3 89999999998765 68999999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=333.81 Aligned_cols=210 Identities=24% Similarity=0.277 Sum_probs=160.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 4 ~l~i~~v~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~---- 77 (258)
T PRK14241 4 RIDVKDLNIYYG--SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPG---- 77 (258)
T ss_pred cEEEeeEEEEEC--CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccc----
Confidence 589999999996 35799999999999999999999999999999999999974 7999999644321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.++|++|++.+|. .|++||+.++......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~------------------------- 115 (258)
T PRK14241 78 -----------------VDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV------------------------- 115 (258)
T ss_pred -----------------cChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC-------------------------
Confidence 001134567999999999987 5999999764210000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......++.+.++++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 116 --~~~~~~~~~~~~~l~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 188 (258)
T PRK14241 116 --RNKKDLDELVEKSLRGANLWNEVK-----DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIE 188 (258)
T ss_pred --CCHHHHHHHHHHHHHHcCCchhhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001234556666666532110 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .++|+|+|||+++.+ +.||+|++|++
T Consensus 189 ~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~ 222 (258)
T PRK14241 189 DLINELKQDYTIVIVTHNMQQAARVSDQTAFFNL 222 (258)
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 98865 478999999998765 68999999973
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-38 Score=334.61 Aligned_cols=213 Identities=26% Similarity=0.271 Sum_probs=163.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+....
T Consensus 20 ~~l~i~nl~~~~~--~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~---- 93 (276)
T PRK14271 20 PAMAAVNLTLGFA--GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY---- 93 (276)
T ss_pred cEEEEeeEEEEEC--CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEcccc----
Confidence 3689999999996 46799999999999999999999999999999999999986 699999964322111
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....+++.++|+||++.+|+.|++||+.++........
T Consensus 94 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~----------------------- 132 (276)
T PRK14271 94 ------------------RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVP----------------------- 132 (276)
T ss_pred ------------------chhHHHhhheEEeccCCccCCccHHHHHHHHHHhccCCC-----------------------
Confidence 001133567999999999999999999987421100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+.+.+.++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 133 ----~~~~~~~~~~~l~~~~l~~~~~-----~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~ 203 (276)
T PRK14271 133 ----RKEFRGVAQARLTEVGLWDAVK-----DRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIE 203 (276)
T ss_pred ----HHHHHHHHHHHHHHcCCCchhh-----hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0000112344566655532110 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 204 ~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i 240 (276)
T PRK14271 204 EFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRL 240 (276)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 368999999998764 68999999999865
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=331.98 Aligned_cols=212 Identities=25% Similarity=0.298 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+ +.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~---~~---- 73 (249)
T PRK14253 3 KFNIENLDLFYG--ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGED---IY---- 73 (249)
T ss_pred eEEEeccEEEEC--CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEE---cc----
Confidence 589999999996 45799999999999999999999999999999999999986 59999996432 21
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
. ..+....++.++|+||++.+|..|+.||+.++....... +
T Consensus 74 -------------~--~~~~~~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~------------~------------ 114 (249)
T PRK14253 74 -------------G--NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIK------------D------------ 114 (249)
T ss_pred -------------c--ccchHHHHhheeEEecCCCcCcccHHHHHHhHHHhcCCC------------c------------
Confidence 0 001113456799999999999999999998742110000 0
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.+.++.+++..... +.....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 115 ---~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~ 186 (249)
T PRK14253 115 ---KKVLDEVVERSLRGAALWDEVK-----DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEE 186 (249)
T ss_pred ---hHHHHHHHHHHHHHcCCchhhh-----HHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0001123445555555432110 11234467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ +++|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 187 LMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred HHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8875 478999999998764 57999999999874
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=335.44 Aligned_cols=210 Identities=26% Similarity=0.344 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------CceEEEeeccCccccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG--------RGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~--------~G~I~~~~~~~~~i~~ 569 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 1 ml~~~nl~~~~~--~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~-- 76 (272)
T PRK13547 1 MLTADHLHVARR--HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI-- 76 (272)
T ss_pred CeEEEEEEEEEC--CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccC--
Confidence 378999999995 457999999999999999999999999999999999999998 99999964432111
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~ 648 (788)
+....++.++|+||++. +|..|++||+.++...... ..+.
T Consensus 77 ---------------------~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~--------~~~~---------- 117 (272)
T PRK13547 77 ---------------------DAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR--------RAGA---------- 117 (272)
T ss_pred ---------------------CHHHHHhhcEEecccCCCCCCCcHHHHHhhccccccc--------cccc----------
Confidence 11123445899999986 5678999999875321000 0000
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc---------cCCCEEEEecCC
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL---------SKPQIVLLDEST 719 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl---------~~p~iLiLDEpT 719 (788)
......+.+.++++.+++.... +....+||||||||++|||||+ .+|++|||||||
T Consensus 118 ------~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt 182 (272)
T PRK13547 118 ------LTHRDGEIAWQALALAGATALV---------GRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182 (272)
T ss_pred ------CCHHHHHHHHHHHHHcCcHhhh---------cCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCcc
Confidence 0001123456677777664322 3446789999999999999999 599999999999
Q ss_pred CCCCHHHHHHHHHHHHh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 720 SALDEANEAHLYEQIEA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 720 SaLD~~se~~i~~~L~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++||+.+...+.+.|++ . |+|+|+|||+++.+ ++||++++|++|+.
T Consensus 183 ~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 99999999999998864 3 89999999998766 68999999999874
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=321.29 Aligned_cols=197 Identities=26% Similarity=0.353 Sum_probs=157.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~---------- 68 (204)
T PRK13538 1 MLEARNLACERD--ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ---------- 68 (204)
T ss_pred CeEEEEEEEEEC--CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc----------
Confidence 378999999996 35799999999999999999999999999999999999999999999964332110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ...+++++|++|++.++. .|++||+.++.....
T Consensus 69 -------------~-~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~------------------------------- 103 (204)
T PRK13538 69 -------------R-DEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG------------------------------- 103 (204)
T ss_pred -------------h-HHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC-------------------------------
Confidence 0 123467999999998876 599999976421000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... ......||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 104 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 174 (204)
T PRK13538 104 PGDDEALWEALAQVGLAGFE---------DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174 (204)
T ss_pred ccHHHHHHHHHHHcCCHHHh---------hCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence 01234566778877765332 223567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEE
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRI 760 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl 760 (788)
.|+|+|++||+++.+ .+.+|++++
T Consensus 175 ~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 175 HAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHCCCEEEEEecChhhhccCCceEEec
Confidence 489999999998776 456787776
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-38 Score=333.12 Aligned_cols=214 Identities=24% Similarity=0.277 Sum_probs=160.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc--cccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE--TDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~--i~~~~~~~~ 575 (788)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 6 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~------- 76 (258)
T PRK11701 6 LLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLY------- 76 (258)
T ss_pred eEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccc-------
Confidence 6999999999963 579999999999999999999999999999999999999999999996543100 21
Q ss_pred hhhhcccccccchhcccc-cCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
........ ..++.++|+||++. ++. .|+.+|+.++.... +..+
T Consensus 77 ----------~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~------------~~~~----------- 123 (258)
T PRK11701 77 ----------ALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV------------GARH----------- 123 (258)
T ss_pred ----------cCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh------------ccCc-----------
Confidence 00000000 12456999999984 333 48888886421000 0000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.++++.+++.. +.....+.+||||||||++|||||+.+|++|||||||++||+.+++.+.
T Consensus 124 ----~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~ 191 (258)
T PRK11701 124 ----YGDIRATAGDWLERVEIDA--------ARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191 (258)
T ss_pred ----HHHHHHHHHHHHHHcCCCh--------hHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 0001234456666665531 0123456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ .|.|+|+|||+.+.+. .||+|++|++|+.
T Consensus 192 ~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i 230 (258)
T PRK11701 192 DLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRV 230 (258)
T ss_pred HHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 88753 3899999999998774 7999999999875
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=316.14 Aligned_cols=170 Identities=26% Similarity=0.418 Sum_probs=144.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++| +++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--------- 68 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRS--------- 68 (182)
T ss_pred EEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccC---------
Confidence 59999999988 799999999999999999999999999999999999999999999643321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++.++|++|++ .++ ..|++||+.++.
T Consensus 69 -------------~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~-------------------------------- 103 (182)
T cd03215 69 -------------PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSS-------------------------------- 103 (182)
T ss_pred -------------HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHh--------------------------------
Confidence 0112356799999995 344 469999986520
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.||||||||++|||||+.+|++|||||||++||+.+.+.+.+.
T Consensus 104 -------------------------------------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 104 -------------------------------------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred -------------------------------------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 0999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 734 IEA---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
|++ .|+|+|++||+++.+ +.||++++|++|+
T Consensus 147 l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 147 IRELADAGKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 864 489999999998654 6799999999875
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=348.56 Aligned_cols=207 Identities=26% Similarity=0.264 Sum_probs=159.4
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCCCccchhhhcc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHTSDVDSLEVNS 581 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~~~~~~~~~~~ 581 (788)
++..+|+ ...+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.+. .++.
T Consensus 29 ~~~~~~g--~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~------------- 93 (382)
T TIGR03415 29 EILDETG--LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVA------------- 93 (382)
T ss_pred HHHHhhC--CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccc-------------
Confidence 4445563 45689999999999999999999999999999999999999999999965421 1221
Q ss_pred cccccchhcccccC-cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 582 QNMNGELTRSMNRN-SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 582 ~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
.......... +++|+||||++.+|+ .|++||+.|+.... +. .....
T Consensus 94 ----~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~------------g~----------------~~~~~ 141 (382)
T TIGR03415 94 ----NCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ------------GM----------------PEAER 141 (382)
T ss_pred ----cCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc------------CC----------------CHHHH
Confidence 0000011112 357999999999997 69999998852100 00 00001
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+.+.++++.+++..+.+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+++.|.+
T Consensus 142 ~~~a~e~le~vgL~~~~~---------~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~ 212 (382)
T TIGR03415 142 RKRVDEQLELVGLAQWAD---------KKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA 212 (382)
T ss_pred HHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH
Confidence 235667788887754332 34567999999999999999999999999999999999999999998854
Q ss_pred -cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.++|+|+|||+++. .++||+|++|++|+.
T Consensus 213 ~~~~TII~iTHdl~e~~~l~DrI~vl~~G~i 243 (382)
T TIGR03415 213 KLNKTIIFVSHDLDEALKIGNRIAIMEGGRI 243 (382)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999876 478999999999864
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=334.16 Aligned_cols=208 Identities=25% Similarity=0.288 Sum_probs=159.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 10 ~l~i~~v~~~~~--~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~---- 83 (264)
T PRK14243 10 VLRTENLNVYYG--SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD---- 83 (264)
T ss_pred EEEEeeeEEEEC--CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc----
Confidence 699999999996 3579999999999999999999999999999999999986 48999999643321000
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|++|++.+|+.|+.||+.++.......
T Consensus 84 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~------------------------- 121 (264)
T PRK14243 84 -----------------VDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYK------------------------- 121 (264)
T ss_pred -----------------cChHHHhhhEEEEccCCccccccHHHHHHhhhhhcCcc-------------------------
Confidence 01113356799999999999889999998753110000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
....+++.++++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 122 ----~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~ 192 (264)
T PRK14243 122 ----GDMDELVERSLRQAALWDEVK-----DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEE 192 (264)
T ss_pred ----hHHHHHHHHHHHHhCchhhHH-----HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 001123344455554421111 01234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEcc
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRIST 762 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~ 762 (788)
.|++ .++|+|++||+++. ..+||++++|++
T Consensus 193 ~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~ 225 (264)
T PRK14243 193 LMHELKEQYTIIIVTHNMQQAARVSDMTAFFNV 225 (264)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEEec
Confidence 8875 46899999999865 578999999984
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=332.82 Aligned_cols=215 Identities=25% Similarity=0.292 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeec---cCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK---DREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~---~~~~i~~~~~~ 573 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.++.
T Consensus 9 ~~i~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~----- 81 (257)
T PRK14246 9 DVFNISRLYLYIN--DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF----- 81 (257)
T ss_pred hheeeeeEEEecC--CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccc-----
Confidence 4699999999996 467999999999999999999999999999999999999999988887542 111110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
..+....++.++|++|++.+|.+ |+.||+.++...... .+
T Consensus 82 ---------------~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~------------~~------------ 122 (257)
T PRK14246 82 ---------------QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI------------KE------------ 122 (257)
T ss_pred ---------------cCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC------------CC------------
Confidence 00111345679999999999875 999999864210000 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+.+.++++.++++... ++.....+..||||||||++|||||+.+|+++||||||++||+.++..+.+
T Consensus 123 ---~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~ 194 (257)
T PRK14246 123 ---KREIKKIVEECLRKVGLWKEV-----YDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEK 194 (257)
T ss_pred ---HHHHHHHHHHHHHHcCCCccc-----hhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 000012345666666654211 112234567799999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.+ .++|+|++||+.+.+ +.||++++|++|+.
T Consensus 195 ~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i 230 (257)
T PRK14246 195 LITELKNEIAIVIVSHNPQQVARVADYVAFLYNGEL 230 (257)
T ss_pred HHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 8875 479999999999876 78999999998864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-38 Score=319.72 Aligned_cols=184 Identities=23% Similarity=0.348 Sum_probs=149.5
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.++||+|.|+.+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~----- 77 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF----- 77 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccc-----
Confidence 47899999999853 5679999999999999999999999999999999999999 8999999964322111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
. ...++.++|++|++.+|. .|++||+.++...
T Consensus 78 ------------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---------------------------- 110 (202)
T cd03233 78 ------------------A-EKYPGEIIYVSEEDVHFPTLTVRETLDFALRC---------------------------- 110 (202)
T ss_pred ------------------h-hhhcceEEEEecccccCCCCcHHHHHhhhhhh----------------------------
Confidence 1 123567999999998887 4999999764100
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. ..++...||||||||++|||||+++|++|||||||++||+.+++.+.
T Consensus 111 ----------------~----------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~ 158 (202)
T cd03233 111 ----------------K----------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEIL 158 (202)
T ss_pred ----------------c----------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHH
Confidence 0 01123459999999999999999999999999999999999999999
Q ss_pred HHHHh---c-CCEEEEEe-cCc-chhhcCCEEEEEccCCC
Q 040758 732 EQIEA---A-GITYISVG-HRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~-g~TvI~Ia-Hr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+.+++ . +.|+|+++ |+. +..+.||++++|++|+.
T Consensus 159 ~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i 198 (202)
T cd03233 159 KCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQ 198 (202)
T ss_pred HHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEE
Confidence 98864 3 56766665 444 45678999999999864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=330.96 Aligned_cols=213 Identities=25% Similarity=0.253 Sum_probs=159.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||+++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|+ +|+|.++|.+..+..
T Consensus 4 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~---- 77 (252)
T PRK14272 4 LLSAQDVNIYYG--DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR---- 77 (252)
T ss_pred EEEEeeeEEEEC--CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCc----
Confidence 589999999996 457999999999999999999999999999999999999874 899999643321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++.++|++|++.+|.. |+.||+.++.......
T Consensus 78 -----------------~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~------------------------ 116 (252)
T PRK14272 78 -----------------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR------------------------ 116 (252)
T ss_pred -----------------cCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCC------------------------
Confidence 0011345679999999999974 9999997632100000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.+.++.+++...+. +.....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 117 ---~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~ 188 (252)
T PRK14272 117 ---DRDHLMEVAERSLRGAALWDEVK-----DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIE 188 (252)
T ss_pred ---CHHHHHHHHHHHHHHcCcchhhh-----hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 00000112233344443321110 0113446789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .++|+|++||+++.+ ..||++++|++|+.
T Consensus 189 ~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14272 189 DLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225 (252)
T ss_pred HHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98875 479999999998765 57999999999875
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=333.95 Aligned_cols=209 Identities=23% Similarity=0.381 Sum_probs=160.4
Q ss_pred cEEEeeeEEEcCCC-------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS-------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~-------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~---~~-- 78 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHP---LH-- 78 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEE---CC--
Confidence 59999999999521 2469999999999999999999999999999999999999999999996433 21
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.++|+||++. ++. .|+.+|+.++..... ..
T Consensus 79 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~-----------~~--------- 120 (267)
T PRK15112 79 ------------------FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT-----------DL--------- 120 (267)
T ss_pred ------------------CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc-----------CC---------
Confidence 0011122356999999985 443 488888865310000 00
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++. ... .....+||||||||++|||||+++|++|||||||++||+.+
T Consensus 121 -------~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 184 (267)
T PRK15112 121 -------EPEQREKQIIETLRQVGLLPDHA---------SYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSM 184 (267)
T ss_pred -------CHHHHHHHHHHHHHHcCCChHHH---------hcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHH
Confidence 0001123566778877763 221 22356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
...+.+.|.+ .|+|+|++||+++.+. .||++++|++|+.
T Consensus 185 ~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i 228 (267)
T PRK15112 185 RSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEV 228 (267)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999988864 3899999999987764 6999999999865
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=333.13 Aligned_cols=209 Identities=23% Similarity=0.278 Sum_probs=160.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+..+..
T Consensus 19 ~~l~~~nl~~~~~--~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~--- 93 (274)
T PRK14265 19 SVFEVEGVKVFYG--GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ--- 93 (274)
T ss_pred ceEEEeeEEEEeC--CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc---
Confidence 4799999999996 35799999999999999999999999999999999999863 6999999654321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....+++.|+|+||++.+|+.|+.||+.++.......
T Consensus 94 ------------------~~~~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~------------------------ 131 (274)
T PRK14265 94 ------------------INSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYK------------------------ 131 (274)
T ss_pred ------------------chhHHHhhcEEEEccCCccccccHHHHHHhHHHhcCch------------------------
Confidence 01113456799999999999889999998752110000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
...++.+.++++.+++...+. +.....+..||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 132 -----~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~ 201 (274)
T PRK14265 132 -----GNLDELVEDSLRRAAIWEEVK-----DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVE 201 (274)
T ss_pred -----HHHHHHHHHHHHHcccchhhH-----HHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHH
Confidence 001123344555554421110 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|.+ +++|+|++||+++.+ +.||++++|++
T Consensus 202 ~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 235 (274)
T PRK14265 202 ELCLELKEQYTIIMVTHNMQQASRVADWTAFFNT 235 (274)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEec
Confidence 99875 478999999998755 68999999984
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-38 Score=332.36 Aligned_cols=211 Identities=24% Similarity=0.301 Sum_probs=161.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||+++|+ ++++++|+||+|++||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+..+.
T Consensus 6 ~~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~---- 79 (259)
T PRK14260 6 PAIKVKDLSFYYN--TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDP---- 79 (259)
T ss_pred ceEEEEEEEEEEC--CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccc----
Confidence 3699999999996 35699999999999999999999999999999999999985 489999964432110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++++++|++|++.+|+.|++||+.++..... ..
T Consensus 80 -----------------~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~------------~~------------ 118 (259)
T PRK14260 80 -----------------RININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISA------------KL------------ 118 (259)
T ss_pred -----------------ccchHhhhhheEEEecccccCCccHHHHHHHHHHHhc------------CC------------
Confidence 0011234567999999999999999999976421000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.++++.+++...+. +.....+..||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 119 ---~~~~~~~~~~~~l~~~~l~~~l~-----~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~ 190 (259)
T PRK14260 119 ---PQADLDEIVESALKGAALWQEVK-----DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVE 190 (259)
T ss_pred ---CHHHHHHHHHHHHHHcCCcchhh-----hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 00001123445666665532111 1123456789999999999999999999999999999999999999999
Q ss_pred HHHHh--cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA--AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .++|+|++||+++.+ +.||++++|++
T Consensus 191 ~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~ 224 (259)
T PRK14260 191 ELIHSLRSELTIAIVTHNMQQATRVSDFTAFFST 224 (259)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEec
Confidence 98865 478999999998765 68999999973
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-38 Score=318.39 Aligned_cols=176 Identities=27% Similarity=0.422 Sum_probs=150.0
Q ss_pred cEEEeeeEEEcCCC----CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTS----KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~----~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||+|+|++. ++++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~---~~~--- 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGR---PLD--- 76 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCE---eCc---
Confidence 48999999999742 257999999999999999999999999999999999999 999999999543 331
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ...++.++|++|++.+|. .|++||+.++..
T Consensus 77 -------------------~-~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---------------------------- 108 (194)
T cd03213 77 -------------------K-RSFRKIIGYVPQDDILHPTLTVRETLMFAAK---------------------------- 108 (194)
T ss_pred -------------------h-HhhhheEEEccCcccCCCCCcHHHHHHHHHH----------------------------
Confidence 0 123567999999999886 499999864210
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
+ ..||||||||++|||||+++|+++||||||++||+.+.+.+
T Consensus 109 ----------------~----------------------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l 150 (194)
T cd03213 109 ----------------L----------------------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV 150 (194)
T ss_pred ----------------h----------------------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH
Confidence 0 03999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
.+.|++ +|+|+|++||+++ ..+.||++++|++|+.
T Consensus 151 ~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i 190 (194)
T cd03213 151 MSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRV 190 (194)
T ss_pred HHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEE
Confidence 998864 4899999999985 4468999999999853
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=332.52 Aligned_cols=219 Identities=22% Similarity=0.346 Sum_probs=165.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.+.....
T Consensus 4 ~l~~~nl~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~------ 75 (262)
T PRK09984 4 IIRVEKLAKTFN--QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREG------ 75 (262)
T ss_pred EEEEeeEEEEeC--CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEeccccc------
Confidence 699999999996 467999999999999999999999999999999999999986 499999654321100
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
. ........++.++|+||++.+|. .|+.||+.++..... ..... . ..
T Consensus 76 -------~-----~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~----~-~~------------- 123 (262)
T PRK09984 76 -------R-----LARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGST--PFWRT----C-FS------------- 123 (262)
T ss_pred -------c-----cchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccc--cchhh----h-cc-------------
Confidence 0 00011123567999999999887 599999987532110 00000 0 00
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
........++.++++.+++.... ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 124 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 194 (262)
T PRK09984 124 WFTREQKQRALQALTRVGMVHFA---------HQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDT 194 (262)
T ss_pred cccHHHHHHHHHHHHHcCCHHHH---------hCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHH
Confidence 00001123567778877765332 234567999999999999999999999999999999999999999998
Q ss_pred HHh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|++||+++. .+.||+|++|++|+.
T Consensus 195 l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i 231 (262)
T PRK09984 195 LRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHV 231 (262)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 864 38999999999975 578999999999864
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=345.59 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=157.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
|++++|++ +. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+..
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~-------------- 65 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR-------------- 65 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCc--------------
Confidence 78999953 33 5 999999999999999999999999999999999999999999654321110
Q ss_pred ccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
........++.++||+|++.+|.. |++||+.|+..... .....+
T Consensus 66 -----~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~------------------------------~~~~~~ 110 (354)
T TIGR02142 66 -----KGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRAR------------------------------PSERRI 110 (354)
T ss_pred -----cccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhccC------------------------------hhHHHH
Confidence 000011235679999999999964 99999987532100 000123
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----c
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----A 737 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~ 737 (788)
.+.+.++.+++.... ...+.+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++ .
T Consensus 111 ~~~~~l~~~gL~~~~---------~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~ 181 (354)
T TIGR02142 111 SFERVIELLGIGHLL---------GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF 181 (354)
T ss_pred HHHHHHHHcCChhHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 466777777765433 234677999999999999999999999999999999999999999988864 3
Q ss_pred CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 738 GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 738 g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 182 g~tiiivtH~~~~~~~~~d~i~~l~~G~i 210 (354)
T TIGR02142 182 GIPILYVSHSLQEVLRLADRVVVLEDGRV 210 (354)
T ss_pred CCEEEEEecCHHHHHHhCCEEEEEeCCEE
Confidence 89999999998765 67999999999964
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=332.24 Aligned_cols=207 Identities=22% Similarity=0.297 Sum_probs=159.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 6 ~l~~~~l~~~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~i~--------- 72 (272)
T PRK15056 6 GIVVNDVTVTWRN-GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQ---PTR--------- 72 (272)
T ss_pred eEEEEeEEEEecC-CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---EhH---------
Confidence 5999999999963 467999999999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. ...++.++|+||++.+ +..++++|+.++.... . +.. ..
T Consensus 73 -------------~-~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~----------~~~-------------~~ 114 (272)
T PRK15056 73 -------------Q-ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGH-M----------GWL-------------RR 114 (272)
T ss_pred -------------H-hhccceEEEeccccccccCCCcchhhheecccccc-c----------ccc-------------cC
Confidence 0 0112459999999865 3457889887642110 0 000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|
T Consensus 115 ~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 115 AKKRDRQIVTAALARVDMVEFR---------HRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred CCHHHHHHHHHHHHHcCChhHh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 0001123455677777765332 2345679999999999999999999999999999999999999999988
Q ss_pred Hh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. .+.||+++.+ +|+.
T Consensus 186 ~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i 219 (272)
T PRK15056 186 RELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTV 219 (272)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEE
Confidence 64 58999999999865 5789999877 6764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=331.39 Aligned_cols=211 Identities=22% Similarity=0.317 Sum_probs=161.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----CceEEEeeccCcccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-----RGKITFYVKDREETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-----~G~I~~~~~~~~~i~~~~ 571 (788)
+.|+++||+++|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+....
T Consensus 6 ~~l~~~nl~~~~~--~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~---- 79 (261)
T PRK14258 6 PAIKVNNLSFYYD--TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYER---- 79 (261)
T ss_pred ceEEEeeEEEEeC--CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcc----
Confidence 3699999999996 346999999999999999999999999999999999999986 79998854321100
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..+....++.++|++|++.+|..|++||+.++.... +..
T Consensus 80 -----------------~~~~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~------------~~~------------ 118 (261)
T PRK14258 80 -----------------RVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIV------------GWR------------ 118 (261)
T ss_pred -----------------ccchHHhhccEEEEecCCccCcccHHHHHHHHHHhc------------CCC------------
Confidence 001123456799999999999999999997631100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
......+.+.++++.+++...+.. .....+.+||||||||++|||||+++|++|||||||++||+.+...+.
T Consensus 119 ---~~~~~~~~~~~~l~~~~l~~~~~~-----~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~ 190 (261)
T PRK14258 119 ---PKLEIDDIVESALKDADLWDEIKH-----KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190 (261)
T ss_pred ---cHHHHHHHHHHHHHHcCCcchhhh-----HhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 000011335566776665321110 123456789999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+.|++ .|+|+|+|||+++.+ +.||+|++|++
T Consensus 191 ~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~ 226 (261)
T PRK14258 191 SLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKG 226 (261)
T ss_pred HHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEcc
Confidence 88864 489999999998765 68999999998
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=341.67 Aligned_cols=220 Identities=20% Similarity=0.249 Sum_probs=163.4
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~ 571 (788)
.|+++||+++|+. +...+|+|+||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+.....
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~--- 79 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLS--- 79 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCC---
Confidence 5899999999963 23469999999999999999999999999999999999986 58999999654322211
Q ss_pred Cccchhhhcccccccchhcccc-cCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
..... ..++.|+||||++.. + ..|+.+|+..+...... .+. .
T Consensus 80 -----------------~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~---------~~~--~------ 125 (330)
T PRK15093 80 -----------------PRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTY---------KGR--W------ 125 (330)
T ss_pred -----------------HHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhc---------ccc--c------
Confidence 00111 123579999999963 3 35899888532000000 000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
. .......+++.++|+.+++..... .....+.+|||||||||+|||||+.+|++||||||||+||+.+.
T Consensus 126 ----~-~~~~~~~~~~~~~L~~~gL~~~~~------~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~ 194 (330)
T PRK15093 126 ----W-QRFGWRKRRAIELLHRVGIKDHKD------AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQ 194 (330)
T ss_pred ----c-ccHHHHHHHHHHHHHHCCCCChHH------HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHH
Confidence 0 000001245678888888753211 12345678999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|++ .|.|+|+|||+++.+ ++||+|++|++|+.
T Consensus 195 ~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~i 237 (330)
T PRK15093 195 AQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQT 237 (330)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999988864 389999999999877 67999999999865
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=312.72 Aligned_cols=207 Identities=24% Similarity=0.419 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++||+..|+ +..+|+++||++++||+++|+|+||+|||||+|.|+|+.+|.+|+|.++|.|....
T Consensus 3 mL~v~~l~~~YG--~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~---------- 70 (237)
T COG0410 3 MLEVENLSAGYG--KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL---------- 70 (237)
T ss_pred ceeEEeEeeccc--ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCC----------
Confidence 689999999996 46799999999999999999999999999999999999999999999965544332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.+.+..|..|+||||.-.+|.. ||+||+..|......+. ..
T Consensus 71 ------------p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~~~--------------------------~~ 112 (237)
T COG0410 71 ------------PPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE--------------------------AQ 112 (237)
T ss_pred ------------CHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccccc--------------------------cc
Confidence 1334567889999999999975 99999997643211000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..+.+ . +....++.+|||||||.+||||||+.+|++|+|||||.+|-|.-.++|++.+++
T Consensus 113 ~~~~e~v~~lFP~L--k---------er~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~ 181 (237)
T COG0410 113 ERDLEEVYELFPRL--K---------ERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181 (237)
T ss_pred cccHHHHHHHChhH--H---------HHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence 01123333333321 1 112456788999999999999999999999999999999999999999998864
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.||+++-++... .+.+||.++|++|+.
T Consensus 182 l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Gri 215 (237)
T COG0410 182 LRKEGGMTILLVEQNARFALEIADRGYVLENGRI 215 (237)
T ss_pred HHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEE
Confidence 37799999999765 578999999999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=350.96 Aligned_cols=214 Identities=28% Similarity=0.380 Sum_probs=168.8
Q ss_pred CCcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc
Q 040758 496 QKLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~ 566 (788)
...++++||++.|... ...+++||||++++||++||||+||||||||.|+|+|+.+|++|+|.++|.+ .+
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~ 356 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LD 356 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cc
Confidence 4578999999999731 2357999999999999999999999999999999999999999999997655 22
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
++ .....+.|+.+-+|+|||+-. ..||.++|.-+-... .
T Consensus 357 ~~--------------------~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~---------------~--- 398 (539)
T COG1123 357 LT--------------------GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH---------------G--- 398 (539)
T ss_pred cc--------------------cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh---------------c---
Confidence 21 012234567788999999743 359998886532100 0
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
........+.+.+.++.+++.. +....++.+||||||||+||||||+.+|++||+|||||+||
T Consensus 399 ---------~~~~~~~~~rv~~ll~~VgL~~--------~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLD 461 (539)
T COG1123 399 ---------GGSGAERRARVAELLELVGLPP--------EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALD 461 (539)
T ss_pred ---------ccchHHHHHHHHHHHHHcCCCH--------HHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccC
Confidence 0000112235777888888763 11245678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.+.+.|.+.|++ .|.|.|+||||+.+++ .||||.||.+|+.
T Consensus 462 vsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 462 VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 9999999998864 5999999999999875 6999999999975
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=318.77 Aligned_cols=195 Identities=33% Similarity=0.360 Sum_probs=158.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||++.|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 2 ~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~---~~--------- 67 (207)
T PRK13539 2 MLEGEDLACVRG--GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD---ID--------- 67 (207)
T ss_pred EEEEEeEEEEEC--CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEe---Cc---------
Confidence 489999999996 3579999999999999999999999999999999999999999999996432 21
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ..++.++|++|++.++ ..|++||+.+.....
T Consensus 68 -------------~~-~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------------------------------- 101 (207)
T PRK13539 68 -------------DP-DVAEACHYLGHRNAMKPALTVAENLEFWAAFL-------------------------------- 101 (207)
T ss_pred -------------ch-hhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc--------------------------------
Confidence 00 1355699999988776 579999997531100
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.++.+++....+ .....||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 102 GGEELDIAAALEAVGLAPLAH---------LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred CCcHHHHHHHHHHcCCHHHHc---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011234667777777654322 23457999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 ---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|+|+|++||+.+.+.. |+++.++.
T Consensus 173 ~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 173 HLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 58999999999988776 99988854
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=329.25 Aligned_cols=195 Identities=24% Similarity=0.319 Sum_probs=155.9
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~~l~i~nls~~----~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------- 98 (282)
T cd03291 37 DNNLFFSNLCLV----GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------- 98 (282)
T ss_pred CCeEEEEEEEEe----cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--------------
Confidence 456999999985 24699999999999999999999999999999999999999999998731
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.|+|++|++.+|+.|++||+.++.....
T Consensus 99 ----------------------~i~yv~q~~~l~~~tv~enl~~~~~~~~------------------------------ 126 (282)
T cd03291 99 ----------------------RISFSSQFSWIMPGTIKENIIFGVSYDE------------------------------ 126 (282)
T ss_pred ----------------------EEEEEeCcccccccCHHHHhhcccccCH------------------------------
Confidence 2899999999999999999987532100
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.++.+.++.+++...... +.++++. .+.+..||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 127 -----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ 201 (282)
T cd03291 127 -----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFES 201 (282)
T ss_pred -----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence 011112222222221111 1334443 456778999999999999999999999999999999999999988875
Q ss_pred H-Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 I-EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L-~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +. .+.|+|+|||+++.+..||++++|++|+.
T Consensus 202 ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i 236 (282)
T cd03291 202 CVCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236 (282)
T ss_pred HHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEE
Confidence 4 32 58999999999988888999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=328.57 Aligned_cols=207 Identities=24% Similarity=0.219 Sum_probs=162.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.+++++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 8 ~~~~~~~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~---- 81 (261)
T PRK14263 8 VMDCKLDKIFYG--NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKG---- 81 (261)
T ss_pred eEEEEeEEEEeC--CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccc----
Confidence 489999999995 46799999999999999999999999999999999999987 7999999654321100
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
......++.++|+||++.+|..|+.||+.++......
T Consensus 82 -----------------~~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~-------------------------- 118 (261)
T PRK14263 82 -----------------VDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRY-------------------------- 118 (261)
T ss_pred -----------------cchHhhhhceEEEecCCccccccHHHHHHHHHhhcCc--------------------------
Confidence 0111345679999999999999999999875211000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.....+++.++++.+++..... +...+.+.+||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 119 ---~~~~~~~~~~~l~~~~l~~~i~-----~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~ 190 (261)
T PRK14263 119 ---KGDLGDRVKHALQGAALWDEVK-----DKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEE 190 (261)
T ss_pred ---hHHHHHHHHHHHHHcCCchhhh-----hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 0001234566777766542211 11234567899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEc
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRIS 761 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~ 761 (788)
.|++ +++|+|+|||+++. .++||++++|+
T Consensus 191 ~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~ 222 (261)
T PRK14263 191 LMVELKKDYTIALVTHNMQQAIRVADTTAFFS 222 (261)
T ss_pred HHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEe
Confidence 9875 57899999999875 47899999996
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=329.73 Aligned_cols=216 Identities=23% Similarity=0.272 Sum_probs=164.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.+.|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.+.....
T Consensus 14 ~~~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~-- 89 (265)
T PRK14252 14 QQKSEVNKLNFYYG--GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILS-- 89 (265)
T ss_pred CceEEEEEEEEEEC--CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccc--
Confidence 45799999999996 35799999999999999999999999999999999999875 7999999653311000
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ......+++.++|++|++.+|.+|++||+.++......
T Consensus 90 ---------------~--~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~------------------------ 128 (265)
T PRK14252 90 ---------------P--EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGV------------------------ 128 (265)
T ss_pred ---------------c--ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCC------------------------
Confidence 0 00111345679999999999999999999874210000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......++.+.++++.+++.. ++.. .......||||||||++|||||+.+|+++||||||++||+.+...
T Consensus 129 ---~~~~~~~~~~~~~l~~~~l~~------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 199 (265)
T PRK14252 129 ---KRRSILEERVENALRNAALWD------EVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATAS 199 (265)
T ss_pred ---ChHHHHHHHHHHHHHHcCCch------hhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHH
Confidence 000001233455555554421 1111 234567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ .++|+|+|||+++.+ ++||++++|++|+.
T Consensus 200 l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i 238 (265)
T PRK14252 200 IEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGEL 238 (265)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 9998875 478999999998765 68999999999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=316.64 Aligned_cols=193 Identities=31% Similarity=0.371 Sum_probs=152.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|+++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~----------- 67 (198)
T TIGR01189 1 LAARNLACSRG--ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ----------- 67 (198)
T ss_pred CEEEEEEEEEC--CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc-----------
Confidence 47899999996 45799999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+ ...++.++|++|++.++. .|+.||+.+..... .
T Consensus 68 ------------~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------------~ 102 (198)
T TIGR01189 68 ------------R-DEPHRNILYLGHLPGLKPELSALENLHFWAAIH--------------------------------G 102 (198)
T ss_pred ------------h-HHhhhheEEeccCcccccCCcHHHHHHHHHHHc--------------------------------C
Confidence 1 123467999999998886 69999997531000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.....+.++++.++++...+ ....+||||||||++||||++++|++|||||||++||+.+...+.+.|.+
T Consensus 103 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 173 (198)
T TIGR01189 103 GAQRTIEDALAAVGLTGFED---------LPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAH 173 (198)
T ss_pred CcHHHHHHHHHHcCCHHHhc---------CChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 01234566777776654322 23567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEE
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
.|+|+|++||+..... |++.+.
T Consensus 174 ~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 174 LARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred HhCCCEEEEEEccccccc-ceEEee
Confidence 5899999999975443 467654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=325.91 Aligned_cols=202 Identities=28% Similarity=0.408 Sum_probs=160.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~----------- 66 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL----------- 66 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC-----------
Confidence 468999999963 389999999999999999999999999999999999999999999964332111
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
. ..++.++|++|++.+|. .|+.||+.++...... ...
T Consensus 67 ------------~--~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~----------------------------~~~ 104 (235)
T cd03299 67 ------------P--PEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKV----------------------------DKK 104 (235)
T ss_pred ------------C--hhHcCEEEEeecCccCCCccHHHHHHHHHHHcCC----------------------------CHH
Confidence 0 12456999999999985 6999999764211000 000
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ....+||||||||++||||++.+|++++|||||++||+.+.+.+.+.|++
T Consensus 105 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~ 175 (235)
T cd03299 105 EIERKVLEIAEMLGIDHLLN---------RKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175 (235)
T ss_pred HHHHHHHHHHHHcCChhHHh---------cCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence 01234566777777654332 33567999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||++..+ +.||++++|++|+.
T Consensus 176 ~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i 208 (235)
T cd03299 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKL 208 (235)
T ss_pred HHhcCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 289999999998764 57999999998864
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=327.70 Aligned_cols=214 Identities=25% Similarity=0.299 Sum_probs=159.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc--cccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE--TDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~--i~~~~~~~~ 575 (788)
.|+++||+++|+ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +.
T Consensus 3 ~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~------- 73 (253)
T TIGR02323 3 LLQVSGLSKSYG--GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELY------- 73 (253)
T ss_pred eEEEeeeEEEeC--CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccc-------
Confidence 599999999996 3568999999999999999999999999999999999999999999997654221 11
Q ss_pred hhhhcccccccchhccc-ccCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSM-NRNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~-~~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+.. .... +..++.++|++|++.+ + ..|+.+|+.+..... ..
T Consensus 74 -------~~~---~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~------------~~------------- 118 (253)
T TIGR02323 74 -------QLS---EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI------------GA------------- 118 (253)
T ss_pred -------cCC---HHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh------------cc-------------
Confidence 000 0000 0123569999999852 2 348888875320000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.+.++.+++.. +.....+..||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 119 --~~~~~~~~~~~~~l~~l~l~~--------~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~ 188 (253)
T TIGR02323 119 --RHYGNIRAAAHDWLEEVEIDP--------TRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLL 188 (253)
T ss_pred --cchHHHHHHHHHHHHHcCCCh--------hhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH
Confidence 000001234556677766531 0123446789999999999999999999999999999999999999998
Q ss_pred HHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
+.|++ .|.|+|++||+.+.+. .||++++|++|+.
T Consensus 189 ~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred HHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 88754 3899999999987764 7999999999875
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=327.62 Aligned_cols=213 Identities=21% Similarity=0.250 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.|+++||++.|+ ++++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.+..+.
T Consensus 3 ~l~~~~v~~~~~--~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~----- 75 (250)
T PRK14266 3 RIEVENLNTYFD--DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDP----- 75 (250)
T ss_pred EEEEEeEEEEeC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccc-----
Confidence 488999999996 3579999999999999999999999999999999999864 4899999964332110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......++.++|+||++.+|..|+.||+.++.......
T Consensus 76 ----------------~~~~~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~------------------------- 114 (250)
T PRK14266 76 ----------------AVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGED------------------------- 114 (250)
T ss_pred ----------------cccHHHHhhheEEEecCCccCcchHHHHHHhHHhhcCCC-------------------------
Confidence 001113456799999999999999999998742110000
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++...+.. ..+..+..||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 115 --~~~~~~~~~~~~l~~~~l~~~l~~-----~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~ 187 (250)
T PRK14266 115 --DEDFIEERVEESLKAAALWDEVKD-----KLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIED 187 (250)
T ss_pred --CHHHHHHHHHHHHHHcCCchhHHH-----HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHH
Confidence 000011334555666655321110 1134467899999999999999999999999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA--AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .++|+|++||+++. ...||++++|++|+.
T Consensus 188 ~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 188 LIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred HHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 8875 57999999999864 567999999999865
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=326.07 Aligned_cols=204 Identities=22% Similarity=0.279 Sum_probs=158.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD----GRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p----~~G~I~~~~~~~~~i~~~~~~ 573 (788)
.|+++||+++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~---~i~----- 72 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK---PVA----- 72 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe---ecc-----
Confidence 59999999999 2 4699999999999999999999999999999999999999 9999999543 221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....++.++||+|++. .|. .|+.+|+.+... ..+
T Consensus 73 -----------------~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~------------~~~------------- 110 (254)
T PRK10418 73 -----------------PCALRGRKIATIMQNPRSAFNPLHTMHTHARETCL------------ALG------------- 110 (254)
T ss_pred -----------------ccccccceEEEEecCCccccCccccHHHHHHHHHH------------HcC-------------
Confidence 00112356999999984 343 477777643100 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....++++.+.++.+++..... ..+..+.+||||||||++|||||+.+|++|||||||++||+.+...+
T Consensus 111 -----~~~~~~~~~~~l~~~~l~~~~~------~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l 179 (254)
T PRK10418 111 -----KPADDATLTAALEAVGLENAAR------VLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARI 179 (254)
T ss_pred -----CChHHHHHHHHHHHcCCCChhh------hhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHH
Confidence 0012245677788777653100 11344678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 180 ~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i 219 (254)
T PRK10418 180 LDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRI 219 (254)
T ss_pred HHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 988864 389999999998765 68999999999875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=314.84 Aligned_cols=174 Identities=25% Similarity=0.385 Sum_probs=148.2
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
.|+++|+++.|+++ ++++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|. ++.
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~---~~~----- 74 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR---PLD----- 74 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE---ehH-----
Confidence 58999999999742 257999999999999999999999999999999999986 489999999533 220
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
...++.++|++|++.+|.. |++||+.++..
T Consensus 75 -------------------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~------------------------------ 105 (192)
T cd03232 75 -------------------KNFQRSTGYVEQQDVHSPNLTVREALRFSAL------------------------------ 105 (192)
T ss_pred -------------------HHhhhceEEecccCccccCCcHHHHHHHHHH------------------------------
Confidence 1234579999999988875 99999975210
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
+. .||||||||++|||||+.+|++|||||||++||+++...+.+
T Consensus 106 --------------~~----------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~ 149 (192)
T cd03232 106 --------------LR----------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVR 149 (192)
T ss_pred --------------Hh----------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHH
Confidence 00 399999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcc--hhhcCCEEEEEcc-CC
Q 040758 733 QIEA---AGITYISVGHRRT--LYDFHKRVLRIST-VD 764 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~-g~ 764 (788)
.|++ .|+|+|++||+++ ..+.||++++|++ |+
T Consensus 150 ~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~ 187 (192)
T cd03232 150 FLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGK 187 (192)
T ss_pred HHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCe
Confidence 8864 4899999999987 3678999999998 65
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=330.70 Aligned_cols=212 Identities=23% Similarity=0.330 Sum_probs=160.8
Q ss_pred cEEEeeeEEEcCC-------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPT-------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~-------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+|.|++ .++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~-- 80 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN-- 80 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccC--
Confidence 5899999999973 1367999999999999999999999999999999999999999999999654321110
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccc--cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.......++.++|++|++. ++ ..|+.+|+.++.... .+.
T Consensus 81 ------------------~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~-----------~~~--------- 122 (268)
T PRK10419 81 ------------------RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL-----------LSL--------- 122 (268)
T ss_pred ------------------hhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh-----------ccC---------
Confidence 0011123567999999983 43 469999986421000 000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
........+.+.++.+++. .. .+..+..||||||||++|||||+.+|++|||||||++||+.+
T Consensus 123 -------~~~~~~~~~~~~l~~~gl~~~~---------~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~ 186 (268)
T PRK10419 123 -------DKAERLARASEMLRAVDLDDSV---------LDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVL 186 (268)
T ss_pred -------CHHHHHHHHHHHHHHcCCChhH---------hhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 0000112455666666553 11 134467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+..+.+.|++ .++|+|++||+++.+ +.||++++|++|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 187 QAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred HHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999888753 389999999998876 57999999999864
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=316.83 Aligned_cols=220 Identities=25% Similarity=0.370 Sum_probs=171.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++++++|+ +-.+++|+||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|.|...+.
T Consensus 4 lL~v~~l~k~FG--Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~--------- 72 (250)
T COG0411 4 LLEVRGLSKRFG--GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP--------- 72 (250)
T ss_pred eeeeccceeecC--CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCC---------
Confidence 478999999995 577999999999999999999999999999999999999999999999655443331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+..|..|+--||.+-+|.+ |+.||+..+.....- ....+.. +. ..+..
T Consensus 73 -------------p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~-----------~~~~l~~-~~----~~~~e 123 (250)
T COG0411 73 -------------PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLG-----------LSGLLGR-PR----ARKEE 123 (250)
T ss_pred -------------HHHHHhccceeecccccccCCCcHHHHHHHHhhhhhh-----------hhhhhcc-cc----chhhH
Confidence 223456789999999999976 999999875321100 0000000 00 00001
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....++..+.|+.+++.... ++...+||+|||.|+.|||||+.+|++|+||||.++|.+....++.+.+++
T Consensus 124 ~~~~e~A~~~Le~vgL~~~a---------~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~ 194 (250)
T COG0411 124 REARERARELLEFVGLGELA---------DRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE 194 (250)
T ss_pred HHHHHHHHHHHHHcCCchhh---------cchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence 11234566778887776443 345677999999999999999999999999999999999999998887764
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|.|+++|-||+.++ .+||||+||+.|+..
T Consensus 195 i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I 229 (250)
T COG0411 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI 229 (250)
T ss_pred HHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc
Confidence 469999999999875 789999999999753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=357.22 Aligned_cols=203 Identities=17% Similarity=0.347 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 11 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 79 (510)
T PRK15439 11 LLCARSISKQYS--GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT--------- 79 (510)
T ss_pred eEEEEeEEEEeC--CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999643321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....+..+|||+|++.++.. |++||+.++....
T Consensus 80 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------------------------- 114 (510)
T PRK15439 80 -------------PAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKR-------------------------------- 114 (510)
T ss_pred -------------HHHHHhCCEEEEeccCccCCCCcHHHHhhcccccc--------------------------------
Confidence 001123469999999988875 9999998753110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (510)
T PRK15439 115 QASMQKMKQLLAALGCQLDL---------DSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185 (510)
T ss_pred hHHHHHHHHHHHHcCCCccc---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 00123466777777765332 233567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++.+ .+||+|++|++|+.
T Consensus 186 ~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 186 LLAQGVGIVFISHKLPEIRQLADRISVMRDGTI 218 (510)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999975
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=299.18 Aligned_cols=193 Identities=27% Similarity=0.410 Sum_probs=162.0
Q ss_pred CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 511 ~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++.++|+++||++++||.++|+||||||||||+|.++-+.+|++|.+++.|++..+.
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~----------------------- 70 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTL----------------------- 70 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccccc-----------------------
Confidence 467899999999999999999999999999999999999999999999965543333
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
..+.+|.+|+|+.|.|.||.+||.||+.||-.-. ..+.+...+.+.|+++
T Consensus 71 ~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~r------------------------------~rr~dr~aa~~llar~ 120 (223)
T COG4619 71 KPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIR------------------------------NRRPDRAAALDLLARF 120 (223)
T ss_pred ChHHHHHHHHHHHcCccccccchhhccccchHHh------------------------------ccCCChHHHHHHHHHc
Confidence 2335688899999999999999999999973211 1233556677788887
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hcCCEEEEEec
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~g~TvI~IaH 746 (788)
++++-. ...+..+||||||||+||+|-|.--|+||+|||||||||+.+.+.|.+.+. ++++.++-|||
T Consensus 121 ~l~~~~--------L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTH 192 (223)
T COG4619 121 ALPDSI--------LTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITH 192 (223)
T ss_pred CCchhh--------hcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEec
Confidence 765310 134567799999999999999999999999999999999999999888774 47999999999
Q ss_pred Ccch-hhcCCEEEEEccCC
Q 040758 747 RRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 747 r~~~-~~~~D~Ilvl~~g~ 764 (788)
+..- ++++|+++-+..|.
T Consensus 193 d~dqa~rha~k~itl~~G~ 211 (223)
T COG4619 193 DKDQAIRHADKVITLQPGH 211 (223)
T ss_pred ChHHHhhhhheEEEeccCc
Confidence 9765 88999999999885
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=358.89 Aligned_cols=211 Identities=18% Similarity=0.312 Sum_probs=164.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 4 ~i~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~--------- 72 (501)
T PRK10762 4 LLQLKGIDKAFP--GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNG--------- 72 (501)
T ss_pred eEEEeeeEEEeC--CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 599999999996 457999999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++||+|++.++.. |++||+.++...... .+. . ..
T Consensus 73 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~---------~~~---~------------~~ 115 (501)
T PRK10762 73 -------------PKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNR---------FGR---I------------DW 115 (501)
T ss_pred -------------HHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccc---------cCc---c------------CH
Confidence 001124569999999988864 999999886321000 000 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 116 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 186 (501)
T PRK10762 116 KKMYAEADKLLARLNLRFSSD---------KLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRE 186 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCcc---------CchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence 001234567788777654322 33567999999999999999999999999999999999999999887754
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 187 l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i 219 (501)
T PRK10762 187 LKSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219 (501)
T ss_pred HHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 589999999998765 68999999999864
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-37 Score=323.76 Aligned_cols=185 Identities=28% Similarity=0.452 Sum_probs=153.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~l~~~~l~~~~~--~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~---------------- 65 (251)
T PRK09544 4 LVSLENVSVSFG--QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG---------------- 65 (251)
T ss_pred EEEEeceEEEEC--CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----------------
Confidence 599999999996 35799999999999999999999999999999999999999999999731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+..++|+||++.++. .|+.+|+.+..
T Consensus 66 ------------------~~~i~~v~q~~~~~~~l~~~~~~~~~~~~--------------------------------- 94 (251)
T PRK09544 66 ------------------KLRIGYVPQKLYLDTTLPLTVNRFLRLRP--------------------------------- 94 (251)
T ss_pred ------------------ccCEEEeccccccccccChhHHHHHhccc---------------------------------
Confidence 124999999998764 36777764321
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
....+++.++++.+++....+ .....||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 95 --~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L 163 (251)
T PRK09544 95 --GTKKEDILPALKRVQAGHLID---------APMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLI 163 (251)
T ss_pred --cccHHHHHHHHHHcCChHHHh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 011244566777776654322 235679999999999999999999999999999999999999999888
Q ss_pred Hh---c-CCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 735 EA---A-GITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 735 ~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.+ . |+|+|++||+++.+ +.||++++|++
T Consensus 164 ~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~ 196 (251)
T PRK09544 164 DQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH 196 (251)
T ss_pred HHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC
Confidence 54 3 89999999999875 68999999964
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=323.50 Aligned_cols=212 Identities=24% Similarity=0.290 Sum_probs=168.5
Q ss_pred cEEEeeeEEEcCCCC----------------------ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 498 LLDIEDLTLKTPTSK----------------------ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~----------------------~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
.|+++||++-|+... ..-++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 478888887774311 1247999999999999999999999999999999999999999
Q ss_pred eEEEeeccCcccccCCCccchhhhcccccccchhccccc-CcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHH
Q 040758 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAA 633 (788)
Q Consensus 556 ~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa 633 (788)
+|+++|.|...++ . ..++. .|+.+++|||...|+ +.||.||..||-.-.-+.
T Consensus 84 ~ilv~g~di~~~~------------~--------~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~------ 137 (386)
T COG4175 84 EILVDGKDIAKLS------------A--------AELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP------ 137 (386)
T ss_pred eEEECCcchhcCC------------H--------HHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCC------
Confidence 9999765543332 1 11222 246699999999988 479999999985321110
Q ss_pred HhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEE
Q 040758 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIV 713 (788)
Q Consensus 634 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iL 713 (788)
.....+...++|+.+|++.+. ..++++||||+||||.|||||..+|+||
T Consensus 138 ----------------------~~er~~~a~~~l~~VgL~~~~---------~~yp~eLSGGMqQRVGLARAla~~~~Il 186 (386)
T COG4175 138 ----------------------KAEREERALEALELVGLEGYA---------DKYPNELSGGMQQRVGLARALANDPDIL 186 (386)
T ss_pred ----------------------HHHHHHHHHHHHHHcCchhhh---------hcCcccccchHHHHHHHHHHHccCCCEE
Confidence 011224567888888876543 3457789999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcc-hhhcCCEEEEEccCCCC
Q 040758 714 LLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRT-LYDFHKRVLRISTVDQN 766 (788)
Q Consensus 714 iLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~ 766 (788)
++|||+|||||--..++|+.|.+ .++|+|+|||+++ .++..|||..|++|+..
T Consensus 187 LMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~iv 244 (386)
T COG4175 187 LMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIV 244 (386)
T ss_pred EecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEE
Confidence 99999999999999999988743 5999999999985 57899999999999753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=320.22 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=158.0
Q ss_pred cEEEeeeEEEcCC----C-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCC
Q 040758 498 LLDIEDLTLKTPT----S-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~----~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~ 571 (788)
+|+++||+++|+. + ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.+. .++.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~--- 77 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLA--- 77 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchh---
Confidence 3789999999963 1 24699999999999999999999999999999999999999999999963210 1221
Q ss_pred Cccchhhhcccccccchhccccc-CcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.. . ...... .++.++|++|++.++.. |++||+.++.... +.
T Consensus 78 ------~~-----~---~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~------------~~----------- 120 (224)
T TIGR02324 78 ------QA-----S---PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER------------GV----------- 120 (224)
T ss_pred ------hc-----C---HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc------------CC-----------
Confidence 00 0 000001 23569999999988864 9999997531100 00
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
......+++.++++.+++.... ....+.+||||||||++|||||+.+|++|||||||++||+.+...
T Consensus 121 -----~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~ 187 (224)
T TIGR02324 121 -----PREAARARARELLARLNIPERL--------WHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQV 187 (224)
T ss_pred -----CHHHHHHHHHHHHHHcCCchhh--------hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 0000123455667776664311 122466799999999999999999999999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEc
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
+.+.|++ .|+|+|++||+.+.+ ..||+++.+.
T Consensus 188 l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 188 VVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9998864 489999999998876 5899999874
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=357.58 Aligned_cols=210 Identities=21% Similarity=0.318 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+.....
T Consensus 5 ~l~~~nl~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~------- 75 (506)
T PRK13549 5 LLEMKNITKTFG--GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASN------- 75 (506)
T ss_pred eEEEeeeEEEeC--CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC-------
Confidence 699999999996 45799999999999999999999999999999999999996 8999999654321110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.+|||||++.+|. .|++||+.++...... +. .
T Consensus 76 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~----------~~---~------------ 115 (506)
T PRK13549 76 ---------------IRDTERAGIAIIHQELALVKELSVLENIFLGNEITPG----------GI---M------------ 115 (506)
T ss_pred ---------------HHHHHHCCeEEEEeccccCCCCcHHHHhhhccccccc----------CC---c------------
Confidence 00112456999999998886 4999999876321000 00 0
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++.... .....+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 186 (506)
T PRK13549 116 DYDAMYLRAQKLLAQLKLDINP---------ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDII 186 (506)
T ss_pred CHHHHHHHHHHHHHHcCCCCCc---------ccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0000123466778877765332 2335679999999999999999999999999999999999999999887
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 187 ~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 187 RDLKAHGIACIYISHKLNEVKAISDTICVIRDGRH 221 (506)
T ss_pred HHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEE
Confidence 54 589999999998765 67999999999874
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=355.93 Aligned_cols=211 Identities=18% Similarity=0.259 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+....
T Consensus 4 ~l~~~~l~~~~~--~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~---------- 71 (501)
T PRK11288 4 YLSFDGIGKTFP--GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFA---------- 71 (501)
T ss_pred eEEEeeeEEEEC--CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC----------
Confidence 599999999996 35799999999999999999999999999999999999999999999964332110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++++|+||+|++.+|.. |+.||+.++...... +. . ..
T Consensus 72 ------------~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~----------~~---~------------~~ 114 (501)
T PRK11288 72 ------------STTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKG----------GI---V------------NR 114 (501)
T ss_pred ------------CHHHHHhCCEEEEEechhccCCCCHHHHHHhccccccc----------CC---C------------CH
Confidence 0011235679999999988875 999999885321000 00 0 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+
T Consensus 115 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 185 (501)
T PRK11288 115 RLLNYEAREQLEHLGVDIDP---------DTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRE 185 (501)
T ss_pred HHHHHHHHHHHHHcCCCCCc---------CCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence 00123566778877765322 234567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|+|+|+|||+++.+ .+||+|++|++|+..
T Consensus 186 ~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~ 219 (501)
T PRK11288 186 LRAEGRVILYVSHRMEEIFALCDAITVFKDGRYV 219 (501)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 589999999998765 679999999999753
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=314.01 Aligned_cols=175 Identities=29% Similarity=0.410 Sum_probs=144.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++|++++|+ ++++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+..+..
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~-------- 70 (200)
T cd03217 1 LEIKDLHVSVG--GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLP-------- 70 (200)
T ss_pred CeEEEEEEEeC--CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCC--------
Confidence 46899999996 35799999999999999999999999999999999999 5899999999654322110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....+..++|+||++.+|.+ |+++|+..
T Consensus 71 --------------~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~------------------------------------ 100 (200)
T cd03217 71 --------------PEERARLGIFLAFQYPPEIPGVKNADFLRY------------------------------------ 100 (200)
T ss_pred --------------HHHHhhCcEEEeecChhhccCccHHHHHhh------------------------------------
Confidence 001123459999999988765 44444300
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....||||||||++|||||+.+|+++||||||++||+.+...+.+.|.
T Consensus 101 --------------------------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~ 148 (200)
T cd03217 101 --------------------------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVIN 148 (200)
T ss_pred --------------------------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 012499999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcchhh--cCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYD--FHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~--~~D~Ilvl~~g~~ 765 (788)
+ .++|+|++||+++... .||++++|++|+.
T Consensus 149 ~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i 183 (200)
T cd03217 149 KLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRI 183 (200)
T ss_pred HHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEE
Confidence 4 4899999999998776 7999999998754
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=357.32 Aligned_cols=214 Identities=17% Similarity=0.248 Sum_probs=165.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~--------- 73 (510)
T PRK09700 5 YISMAGIGKSFG--PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD--------- 73 (510)
T ss_pred eEEEeeeEEEcC--CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCC---------
Confidence 699999999996 457999999999999999999999999999999999999999999999654321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.++||+|++.++.. |++||+.++...... . .+. ..+ ..
T Consensus 74 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~------~~~-~~~------------~~ 119 (510)
T PRK09700 74 -------------HKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKK--V------CGV-NII------------DW 119 (510)
T ss_pred -------------HHHHHHCCeEEEeecccccCCCcHHHHhhhccccccc--c------ccc-ccc------------CH
Confidence 000123569999999988865 999999875321000 0 000 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++
T Consensus 120 ~~~~~~~~~~l~~~gl~~~~---------~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 190 (510)
T PRK09700 120 REMRVRAAMMLLRVGLKVDL---------DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ 190 (510)
T ss_pred HHHHHHHHHHHHHcCCCCCc---------ccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 00123466778877765332 234567999999999999999999999999999999999999999988764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 191 l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i 223 (510)
T PRK09700 191 LRKEGTAIVYISHKLAEIRRICDRYTVMKDGSS 223 (510)
T ss_pred HHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999874
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-37 Score=331.97 Aligned_cols=226 Identities=23% Similarity=0.311 Sum_probs=166.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCCceEEEeeccCcccccC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-----DGRGKITFYVKDREETDAH 570 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-----p~~G~I~~~~~~~~~i~~~ 570 (788)
+..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.+.....
T Consensus 43 ~~~l~i~nl~~~~~--~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~-- 118 (305)
T PRK14264 43 DAKLSVEDLDVYYG--DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDG-- 118 (305)
T ss_pred CceEEEEEEEEEeC--CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc--
Confidence 34799999999996 3579999999999999999999999999999999999986 68999999654321100
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
......++.++|++|++.+|+.|++||+.++........ .+... . .
T Consensus 119 -------------------~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~-------~~~~~---~-----~ 164 (305)
T PRK14264 119 -------------------VNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDIN-------TGLLA---R-----L 164 (305)
T ss_pred -------------------ccHHHHhhceEEEccCCccccccHHHHHHhHHhhccccc-------ccccc---c-----c
Confidence 011123567999999999999999999987521100000 00000 0 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
.+........+.+.++++.+++... +.. ....+.+||||||||++|||||+++|++|||||||++||+.+...
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~~l~~~------~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~ 238 (305)
T PRK14264 165 LGRDDKDAEDELVERSLRQAALWDE------VNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSK 238 (305)
T ss_pred cccCchHHHHHHHHHHHHHcCCchh------hhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 0000000112346667777665321 112 245567899999999999999999999999999999999999999
Q ss_pred HHHHHHh--cCCEEEEEecCcchh-hcCCEE-EEEccCCC
Q 040758 730 LYEQIEA--AGITYISVGHRRTLY-DFHKRV-LRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~--~g~TvI~IaHr~~~~-~~~D~I-lvl~~g~~ 765 (788)
+.+.|++ .++|+|++||+++.+ ..||++ ++|++|+.
T Consensus 239 l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i 278 (305)
T PRK14264 239 IEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGEL 278 (305)
T ss_pred HHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEE
Confidence 9999875 468999999998775 679997 56798864
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=313.27 Aligned_cols=181 Identities=22% Similarity=0.331 Sum_probs=139.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.. .. ...
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~-~~--------------------~~~ 62 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLD-YS--------------------RKG 62 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEcc-cc--------------------ccc
Confidence 457999999999999999999999999999999999999999999999654321 00 001
Q ss_pred cccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
....++.++|++|++ .+|..|++||+.++....... .....+++.++++.
T Consensus 63 ~~~~~~~i~~~~q~~~~~~~~~tv~~nl~~~~~~~~~~----------------------------~~~~~~~~~~~l~~ 114 (190)
T TIGR01166 63 LLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLS----------------------------EAEVERRVREALTA 114 (190)
T ss_pred hHHHHhhEEEEecChhhccccccHHHHHHHHHHHcCCC----------------------------HHHHHHHHHHHHHH
Confidence 112356799999998 477889999998742100000 00012345667777
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+++.... .....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++ .|+|+|+|||
T Consensus 115 ~~l~~~~---------~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH 185 (190)
T TIGR01166 115 VGASGLR---------ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTH 185 (190)
T ss_pred cCchhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEee
Confidence 7665332 234567999999999999999999999999999999999999999998864 5899999999
Q ss_pred Ccch
Q 040758 747 RRTL 750 (788)
Q Consensus 747 r~~~ 750 (788)
+++.
T Consensus 186 ~~~~ 189 (190)
T TIGR01166 186 DVDL 189 (190)
T ss_pred cccc
Confidence 9764
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=321.95 Aligned_cols=193 Identities=22% Similarity=0.257 Sum_probs=148.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +. ..
T Consensus 33 ~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~---~~---------------------~~ 88 (236)
T cd03267 33 EVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLV---PW---------------------KR 88 (236)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE---cc---------------------cc
Confidence 4579999999999999999999999999999999999999999999996432 21 00
Q ss_pred cccCcceEEEEc-cccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHh
Q 040758 592 MNRNSRGVFFLP-QRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALED 669 (788)
Q Consensus 592 ~~~~r~~i~~v~-Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~ 669 (788)
....++.++|++ |++.++ ..|++||+.+..... +. ......+.+.+.++.
T Consensus 89 ~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~------------~~----------------~~~~~~~~~~~~l~~ 140 (236)
T cd03267 89 RKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY------------DL----------------PPARFKKRLDELSEL 140 (236)
T ss_pred chhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc------------CC----------------CHHHHHHHHHHHHHH
Confidence 113456799997 666776 469999986531100 00 000011234455666
Q ss_pred cccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEe
Q 040758 670 VKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVG 745 (788)
Q Consensus 670 ~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~Ia 745 (788)
+++.... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+ .++|+|++|
T Consensus 141 ~gl~~~~---------~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivs 211 (236)
T cd03267 141 LDLEELL---------DTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTS 211 (236)
T ss_pred cCChhHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 5554322 223567999999999999999999999999999999999999999998864 378999999
Q ss_pred cCcchh-hcCCEEEEEccCCC
Q 040758 746 HRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 746 Hr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|+++.+ +.||++++|++|+.
T Consensus 212 H~~~~~~~~~d~i~~l~~G~i 232 (236)
T cd03267 212 HYMKDIEALARRVLVIDKGRL 232 (236)
T ss_pred cCHHHHHHhCCEEEEEeCCEE
Confidence 998765 67999999998854
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=322.52 Aligned_cols=214 Identities=24% Similarity=0.302 Sum_probs=159.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++||++.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+.....
T Consensus 7 ~l~~~~l~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~------- 77 (252)
T CHL00131 7 ILEIKNLHASVN--ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLE------- 77 (252)
T ss_pred eEEEEeEEEEeC--CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCC-------
Confidence 699999999996 35799999999999999999999999999999999998 6899999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....+..++|++|++.++.+ |+.+|+.+........ .+. ...
T Consensus 78 ---------------~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~--------~~~-------------~~~ 121 (252)
T CHL00131 78 ---------------PEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKF--------QGL-------------PEL 121 (252)
T ss_pred ---------------hhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcc--------ccc-------------ccc
Confidence 000112358999999998875 8889886531100000 000 000
Q ss_pred CCCCChHHHHHHHHhccccc-ccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++++.+++.. .. ..... .||||||||++|||||+++|++|||||||++||+.+...+.+
T Consensus 122 ~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 192 (252)
T CHL00131 122 DPLEFLEIINEKLKLVGMDPSFL---------SRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192 (252)
T ss_pred cHHHHHHHHHHHHHHcCCchhhh---------ccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 00001134556677766641 11 22233 499999999999999999999999999999999999999998
Q ss_pred HHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|++||+.+.+. . ||++++|++|+.
T Consensus 193 ~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i 230 (252)
T CHL00131 193 GINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKI 230 (252)
T ss_pred HHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEE
Confidence 8864 4899999999988765 4 899999999865
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=323.30 Aligned_cols=215 Identities=25% Similarity=0.339 Sum_probs=161.6
Q ss_pred EEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-C----CCceEEEeeccCcccccCC
Q 040758 499 LDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-D----GRGKITFYVKDREETDAHT 571 (788)
Q Consensus 499 I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p----~~G~I~~~~~~~~~i~~~~ 571 (788)
++++|++..|+..+ ..+++||||+|++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|.|...++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~--- 78 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS--- 78 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCC---
Confidence 68899999987533 368999999999999999999999999999999999998 3 5799999766543331
Q ss_pred CccchhhhcccccccchhcccccC-cceEEEEccccccC-C--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPYMV-L--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~lf-~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+.+ .+.|++|||||.-- + .||.+++. +..+...- .
T Consensus 79 -----------------~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~------------E~l~~h~~---~----- 121 (316)
T COG0444 79 -----------------EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA------------EVLRLHGK---G----- 121 (316)
T ss_pred -----------------HHHHHhhcCceEEEEEcCchhhcCChhhHHHHHH------------HHHHHhhc---c-----
Confidence 0111122 35699999998521 1 25555442 11111000 0
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
...+...+.+.+.|+.+++..-..+ ...++.+|||||||||.||-||+.+|++||.||||+|||..++
T Consensus 122 ------~~~~ea~~~a~~~L~~Vgi~~~~~~------~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~Q 189 (316)
T COG0444 122 ------LSKKEAKERAIELLELVGIPDPERR------LKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQ 189 (316)
T ss_pred ------hhhHHHHHHHHHHHHHcCCCCHHHH------HhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHH
Confidence 0001123467888999888643222 2456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++|.+.|++ .|.|+|+||||+.++ +.||||+||..|+.
T Consensus 190 aqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~i 232 (316)
T COG0444 190 AQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRI 232 (316)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEE
Confidence 999998864 599999999999875 68999999998854
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=321.15 Aligned_cols=215 Identities=24% Similarity=0.305 Sum_probs=152.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.+....+
T Consensus 1 ~i~~~nl~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~------- 71 (248)
T PRK09580 1 MLSIKDLHVSVE--DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELS------- 71 (248)
T ss_pred CeEEEEEEEEeC--CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCC-------
Confidence 378999999996 35799999999999999999999999999999999999 4799999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.++|++|++.++.. |..+++.+....... .+... .+
T Consensus 72 ---------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---~~------------ 115 (248)
T PRK09580 72 ---------------PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRS------YRGQE---PL------------ 115 (248)
T ss_pred ---------------HHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhc------ccccc---cc------------
Confidence 001123569999999987654 444443211000000 00000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCC-CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS-SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g-~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......+.+.+.++.+++.. ++. .... ..||||||||++|||||+++|++|||||||++||+.+...+.+.
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~------~~~--~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~ 187 (248)
T PRK09580 116 DRFDFQDLMEEKIALLKMPE------DLL--TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADG 187 (248)
T ss_pred hHHHHHHHHHHHHHHcCCCh------hhc--ccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 00000123445566555421 111 1122 36999999999999999999999999999999999999999987
Q ss_pred HHh---cCCEEEEEecCcchhhc--CCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYDF--HKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~~--~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|++||+++.... ||+|++|++|+.
T Consensus 188 l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i 224 (248)
T PRK09580 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 224 (248)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeE
Confidence 754 58999999999887764 899999999864
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=309.81 Aligned_cols=189 Identities=23% Similarity=0.282 Sum_probs=150.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 1 ~l~~~~l~~~~~--~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~i~--------- 65 (195)
T PRK13541 1 MLSLHQLQFNIE--QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNC---NIN--------- 65 (195)
T ss_pred CeEEEEeeEEEC--CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCc---ccC---------
Confidence 378999999995 344555 99999999999999999999999999999999999999999543 221
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. . ++.++|++|++.+ +..|++||+.+.....
T Consensus 66 -------------~~-~-~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~-------------------------------- 98 (195)
T PRK13541 66 -------------NI-A-KPYCTYIGHNLGLKLEMTVFENLKFWSEIY-------------------------------- 98 (195)
T ss_pred -------------hh-h-hhhEEeccCCcCCCccCCHHHHHHHHHHhc--------------------------------
Confidence 00 0 2348999998755 5679999997632110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
...+++.++++.++++... ...+.+||||||||++||||++++|++|||||||++||+.+...+.+.++
T Consensus 99 -~~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~ 168 (195)
T PRK13541 99 -NSAETLYAAIHYFKLHDLL---------DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVM 168 (195)
T ss_pred -ccHHHHHHHHHHcCCHhhh---------ccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 0123445566666554322 23466799999999999999999999999999999999999999998885
Q ss_pred --hcCCEEEEEecCcchhhcCCEEE
Q 040758 736 --AAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 736 --~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
+.|+|+|++||+.+.++.+|.+.
T Consensus 169 ~~~~~~tiii~sh~~~~i~~~~~~~ 193 (195)
T PRK13541 169 KANSGGIVLLSSHLESSIKSAQILQ 193 (195)
T ss_pred HHhCCCEEEEEeCCccccchhheec
Confidence 26899999999999988888753
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=297.96 Aligned_cols=201 Identities=25% Similarity=0.310 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++.+++++.+|++..+.+|+|+|++|.+||.++++||||||||||+|+++||.+|+.|+|.+|| +.++
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~---r~i~--------- 70 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG---RRIE--------- 70 (259)
T ss_pred eeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC---Eecc---------
Confidence 4677899999986555699999999999999999999999999999999999999999999954 3332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
++ -..=|+|+|++-|++- ++.||+.||-.-.-+...
T Consensus 71 gP----------------gaergvVFQ~~~LlPWl~~~dNvafgL~l~Gi~k~--------------------------- 107 (259)
T COG4525 71 GP----------------GAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKA--------------------------- 107 (259)
T ss_pred CC----------------CccceeEeccCccchhhHHHHHHHHHHHhcCCCHH---------------------------
Confidence 11 1124899999999985 999999997432211110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
...+...+.|..+|++... +.+.-+||||||||+.|||||..+|++|+||||++|||.-+.+.+|+.|-
T Consensus 108 -~R~~~a~q~l~~VgL~~~~---------~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 108 -QRREIAHQMLALVGLEGAE---------HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred -HHHHHHHHHHHHhCccccc---------ccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 0113345566777665321 33456799999999999999999999999999999999999999999874
Q ss_pred ---hcCCEEEEEecCcch-hhcCCEEEEEccC
Q 040758 736 ---AAGITYISVGHRRTL-YDFHKRVLRISTV 763 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g 763 (788)
+.|+.+++|||+.+. +-.+++++||+.|
T Consensus 178 lw~~tgk~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 178 LWQETGKQVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred HHHHhCCeEEEEeccHHHHHhhhheeEEecCC
Confidence 369999999999764 4569999999876
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=342.01 Aligned_cols=213 Identities=21% Similarity=0.331 Sum_probs=168.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++++|+ +-++|+|+||++++||+.||+|+||||||||+|+|+|.|+|++|+|.++|+ ....
T Consensus 8 ll~~~~i~K~Fg--gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~---~~~~-------- 74 (500)
T COG1129 8 LLELRGISKSFG--GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGK---PVAF-------- 74 (500)
T ss_pred eeeeecceEEcC--CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCE---EccC--------
Confidence 589999999997 467999999999999999999999999999999999999999999999643 3310
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+.+.....|++|+||..|++. ||.|||.+|.....- .+..+ .
T Consensus 75 -----------~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~---------~g~id---------------~ 119 (500)
T COG1129 75 -----------SSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRR---------FGLID---------------R 119 (500)
T ss_pred -----------CCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccC---------CCccC---------------H
Confidence 01222345679999999999964 999999987643210 01000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
+.-.++..++|..+++.. + ......+||+||||.|+|||||..++++||||||||+|+....+.+++.++
T Consensus 120 ~~m~~~A~~~l~~lg~~~--------~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~ 190 (500)
T COG1129 120 KAMRRRARELLARLGLDI--------D-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRR 190 (500)
T ss_pred HHHHHHHHHHHHHcCCCC--------C-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 111234556677665541 1 234466799999999999999999999999999999999999988887765
Q ss_pred --hcCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 736 --AAGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 736 --~~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
++|.++|+||||+ +..+.||||.||.||+...
T Consensus 191 Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~ 225 (500)
T COG1129 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG 225 (500)
T ss_pred HHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEee
Confidence 4799999999998 4668999999999997543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=301.43 Aligned_cols=213 Identities=26% Similarity=0.339 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+.+|++++.. ++.+|+++||+++|||++||+||||||||||+|.|+|...|++|++.++|.+....
T Consensus 1 mi~a~nls~~~~--Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~---------- 68 (259)
T COG4559 1 MIRAENLSYSLA--GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSW---------- 68 (259)
T ss_pred CeeeeeeEEEee--cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhC----------
Confidence 478999999985 57799999999999999999999999999999999999999999999965443222
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+.+.-+++||+..| |.-|+.|-+.+|..... .+.
T Consensus 69 -------------~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~----------------------------~g~ 107 (259)
T COG4559 69 -------------PPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR----------------------------SGR 107 (259)
T ss_pred -------------CHHHHHHHhhhcccCcccccceEHHHHHHhcccccc----------------------------cCC
Confidence 122334557899999887 67899999988754310 011
Q ss_pred CCChHH--HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHH
Q 040758 657 KPSTDD--LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS------KPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 657 ~~~~~~--~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~------~p~iLiLDEpTSaLD~~se~ 728 (788)
.+.+++ ..++|..+++..+..+ ....|||||||||.+||+|.+ ++++|+||||||+||...+.
T Consensus 108 ~~~e~~~i~~~ala~~d~~~la~R---------~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~ 178 (259)
T COG4559 108 EPEEDERIAAQALAATDLSGLAGR---------DYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQH 178 (259)
T ss_pred CchhhHHHHHHHHHHcChhhhhcc---------chhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHH
Confidence 112233 5577777766544333 245699999999999999986 45699999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCe
Q 040758 729 HLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNW 772 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~ 772 (788)
.+++..++ .|..|++|-||+++. .|||||++|.+|+..-+..-|
T Consensus 179 ~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~ 226 (259)
T COG4559 179 HTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQ 226 (259)
T ss_pred HHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHH
Confidence 98887664 789999999999875 699999999999875554444
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=299.83 Aligned_cols=156 Identities=26% Similarity=0.436 Sum_probs=130.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++|++++|+ ++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 l~~~~l~~~~~--~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~---------- 68 (163)
T cd03216 1 LELRGITKRFG--GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFAS---------- 68 (163)
T ss_pred CEEEEEEEEEC--CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCC----------
Confidence 47899999996 357999999999999999999999999999999999999999999999543211100
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
..+..++.++|++|
T Consensus 69 ------------~~~~~~~~i~~~~q------------------------------------------------------ 82 (163)
T cd03216 69 ------------PRDARRAGIAMVYQ------------------------------------------------------ 82 (163)
T ss_pred ------------HHHHHhcCeEEEEe------------------------------------------------------
Confidence 00012234555443
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
||||||||++|||||+++|++|||||||++||+++.+.+.+.|++
T Consensus 83 ---------------------------------LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 129 (163)
T cd03216 83 ---------------------------------LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLR 129 (163)
T ss_pred ---------------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999998864
Q ss_pred -cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+.+. .+.||++++|++|+.
T Consensus 130 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 130 AQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred HCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999875 467999999998853
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=351.20 Aligned_cols=207 Identities=19% Similarity=0.342 Sum_probs=160.4
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 1 ~~nl~~~~~--~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------------ 66 (491)
T PRK10982 1 MSNISKSFP--GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKS------------ 66 (491)
T ss_pred CCceEEEeC--CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCC------------
Confidence 368999996 457999999999999999999999999999999999999999999999644321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
.....++.++||||++.++. .|++||+.++..... +. .. .....
T Consensus 67 ----------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~-----------~~--~~------------~~~~~ 111 (491)
T PRK10982 67 ----------SKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTK-----------GM--FV------------DQDKM 111 (491)
T ss_pred ----------HHHHHhCCEEEEecccccccCCCHHHHhhccccccc-----------cc--cc------------CHHHH
Confidence 01123456999999998775 599999987532100 00 00 00001
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.+++.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|++
T Consensus 112 ~~~~~~~l~~~~l~~~~---------~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~ 182 (491)
T PRK10982 112 YRDTKAIFDELDIDIDP---------RAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE 182 (491)
T ss_pred HHHHHHHHHHcCCCCCc---------cCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh
Confidence 23456677776664322 234677999999999999999999999999999999999999999888754
Q ss_pred cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 183 ~g~tvii~tH~~~~~~~~~d~i~~l~~G~i 212 (491)
T PRK10982 183 RGCGIVYISHKMEEIFQLCDEITILRDGQW 212 (491)
T ss_pred CCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 68999999999964
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=359.51 Aligned_cols=213 Identities=24% Similarity=0.364 Sum_probs=164.3
Q ss_pred CcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 497 KLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
..|+++||++.|+.+ ...+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+....
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTL 391 (623)
T ss_pred ceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcC
Confidence 469999999999621 24689999999999999999999999999999999999999999999965432211
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTS 644 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~ 644 (788)
. ......++++|+||||+++ ++. .|+.||+.++.... +.
T Consensus 392 ~--------------------~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~------------~~------ 433 (623)
T PRK10261 392 S--------------------PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH------------GL------ 433 (623)
T ss_pred C--------------------HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc------------CC------
Confidence 0 0011124567999999983 664 59999996531000 00
Q ss_pred hhhhhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 645 AQKLENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 645 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
.......+++.+.|+.+++. ... ..+..+|||||||||+|||||+.+|++||||||||+||
T Consensus 434 ---------~~~~~~~~~~~~~L~~~gL~~~~~---------~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 434 ---------LPGKAAAARVAWLLERVGLLPEHA---------WRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred ---------CCHHHHHHHHHHHHHHcCCCHHHh---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00000124566778877764 221 23467899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+...+.+.|++ .|.|+|+|||+++.+ .+||+|++|++|+.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~i 542 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQI 542 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999998853 489999999998765 67999999999875
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=316.37 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=146.4
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++. . .
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~----------------------~---~ 52 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGK---QIT----------------------E---P 52 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCE---ECC----------------------C---C
Confidence 57999999999999999999999999999999999999999999543 221 0 0
Q ss_pred cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
....+|++|++.+|. .|+.||+.++.... .. +. ......+.+.+.++.+++..
T Consensus 53 ~~~~~~v~q~~~l~~~~tv~e~l~~~~~~~-~~---------~~----------------~~~~~~~~~~~~l~~~~l~~ 106 (230)
T TIGR01184 53 GPDRMVVFQNYSLLPWLTVRENIALAVDRV-LP---------DL----------------SKSERRAIVEEHIALVGLTE 106 (230)
T ss_pred ChhheEEecCcccCCCCCHHHHHHHHHHhc-cc---------CC----------------CHHHHHHHHHHHHHHcCCHH
Confidence 112489999999987 59999997641100 00 00 00001234566677766653
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcch
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTL 750 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~ 750 (788)
.. .....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|.+ .|+|+|+|||+++.
T Consensus 107 ~~---------~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 177 (230)
T TIGR01184 107 AA---------DKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDE 177 (230)
T ss_pred HH---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 22 234567999999999999999999999999999999999999999998864 38999999999876
Q ss_pred -hhcCCEEEEEccCCC
Q 040758 751 -YDFHKRVLRISTVDQ 765 (788)
Q Consensus 751 -~~~~D~Ilvl~~g~~ 765 (788)
.+.||++++|++|+.
T Consensus 178 ~~~~~d~v~~l~~G~i 193 (230)
T TIGR01184 178 ALLLSDRVVMLTNGPA 193 (230)
T ss_pred HHHhcCEEEEEeCCcE
Confidence 468999999999975
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=306.48 Aligned_cols=171 Identities=35% Similarity=0.472 Sum_probs=136.9
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~------------ 66 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASL------------ 66 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcC------------
Confidence 47899999963 5799999999999999999999999999999999999999999999964432111
Q ss_pred cccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
+...+++.++|++| +
T Consensus 67 -----------~~~~~~~~i~~~~q--------~---------------------------------------------- 81 (180)
T cd03214 67 -----------SPKELARKIAYVPQ--------A---------------------------------------------- 81 (180)
T ss_pred -----------CHHHHHHHHhHHHH--------H----------------------------------------------
Confidence 01122345888888 0
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
++.+++... ....+..||||||||++|||||+.+|+++||||||++||+++...+.+.|++
T Consensus 82 -------l~~~gl~~~---------~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~ 145 (180)
T cd03214 82 -------LELLGLAHL---------ADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145 (180)
T ss_pred -------HHHcCCHhH---------hcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH
Confidence 011111110 0123456999999999999999999999999999999999999999988864
Q ss_pred c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ ++|+|++||+++.+ +.||++++|++|+.
T Consensus 146 ~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 146 ERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 3 89999999998875 78999999998864
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=349.30 Aligned_cols=211 Identities=16% Similarity=0.240 Sum_probs=162.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccch
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.+.....
T Consensus 2 l~i~~l~~~~~--~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~-------- 71 (500)
T TIGR02633 2 LEMKGIVKTFG--GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASN-------- 71 (500)
T ss_pred EEEEeEEEEeC--CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCC--------
Confidence 78999999996 45799999999999999999999999999999999999997 7999999644321110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.....++.++||||++.++.. |+.||+.++....... +. . .
T Consensus 72 --------------~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~---------~~---~------------~ 113 (500)
T TIGR02633 72 --------------IRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPG---------GR---M------------A 113 (500)
T ss_pred --------------HHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccc---------cc---c------------C
Confidence 001124569999999988864 9999998753210000 00 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++..... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~--------~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 185 (500)
T TIGR02633 114 YNAMYLRAKNLLRELQLDADNV--------TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIR 185 (500)
T ss_pred HHHHHHHHHHHHHHcCCCCCcc--------cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0001234566777776643210 12356799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ ..||+|++|++|+.
T Consensus 186 ~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i 219 (500)
T TIGR02633 186 DLKAHGVACVYISHKLNEVKAVCDTICVIRDGQH 219 (500)
T ss_pred HHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeE
Confidence 4 589999999998765 67999999999874
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=350.06 Aligned_cols=198 Identities=22% Similarity=0.231 Sum_probs=156.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 3 ~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~---------- 70 (490)
T PRK10938 3 SLQISQGTFRLS--DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRL---------- 70 (490)
T ss_pred eEEEEeEEEEcC--CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccC----------
Confidence 589999999996 34699999999999999999999999999999999999999999999854321111
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc--C-------CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM--V-------LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l--f-------~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~ 648 (788)
+....++.++|++|++.+ + ..|+++|+.++.
T Consensus 71 -------------~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 110 (490)
T PRK10938 71 -------------SFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--------------------------- 110 (490)
T ss_pred -------------CHHHHHHHhceeccCcchhhcccchhhccccHHHhcccch---------------------------
Confidence 001123459999998753 1 235666554320
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
...+++.++++.++++...+ ....+||||||||++|||||+.+|++|||||||++||+.+.+
T Consensus 111 ---------~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~ 172 (490)
T PRK10938 111 ---------KDPARCEQLAQQFGITALLD---------RRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172 (490)
T ss_pred ---------hHHHHHHHHHHHcCCHhhhh---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHH
Confidence 01234566777776654322 345679999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++ .|+|+|+|||+++.+ +.||++++|++|+.
T Consensus 173 ~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i 213 (490)
T PRK10938 173 QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTL 213 (490)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 99998864 489999999998755 68999999999974
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=339.45 Aligned_cols=214 Identities=27% Similarity=0.397 Sum_probs=165.3
Q ss_pred cEEEeeeEEEcCCCCc--cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC----CceEEEeeccCcccccCC
Q 040758 498 LLDIEDLTLKTPTSKA--TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG----RGKITFYVKDREETDAHT 571 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~--~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~----~G~I~~~~~~~~~i~~~~ 571 (788)
.++++|++..|...+. .+++|+||+|.+||++||||+|||||||+.+.|+|+.++. +|+|.++|.|...+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~--- 81 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLS--- 81 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCC---
Confidence 6999999999865433 4899999999999999999999999999999999999988 899999765433321
Q ss_pred CccchhhhcccccccchhcccccC-cceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
....+.. .+.|+||||+|. .++ -||.++|. ++.+..+-
T Consensus 82 -----------------~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~------------E~~~~h~~--------- 123 (539)
T COG1123 82 -----------------EREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIR------------EALRLHGK--------- 123 (539)
T ss_pred -----------------HHHHHHhccccEEEEecCchhhcCchhhHHHHHH------------HHHHHhcc---------
Confidence 1111222 356999999984 333 36665553 11111110
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
.......+++.+.|+.+++.+-..+ ..++.+||||||||+.||+||+.+|++||+||||+|||+.++
T Consensus 124 ------~~~~ea~~~a~elL~~Vgl~~~~~~-------~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q 190 (539)
T COG1123 124 ------GSRAEARKRAVELLEQVGLPDPERR-------DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190 (539)
T ss_pred ------ccHHHHHHHHHHHHHHcCCCChhhh-------ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHH
Confidence 0001123567888998888653221 346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++|.+.|++ .|.++|+|||+++++ ..||||+||.+|+.
T Consensus 191 ~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~i 233 (539)
T COG1123 191 AQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEI 233 (539)
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEE
Confidence 999998864 699999999999986 57999999999964
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=318.00 Aligned_cols=198 Identities=27% Similarity=0.309 Sum_probs=153.3
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhh
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|.+....
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~------------ 62 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAW------------ 62 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcC------------
Confidence 46777774 279999999999999999999999999999999999965 99999965432111
Q ss_pred cccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+...+++.++|+||++.++ ..|+++|+.++...... ...
T Consensus 63 -----------~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~-----------------------------~~~ 102 (248)
T PRK03695 63 -----------SAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDKTR-----------------------------TEA 102 (248)
T ss_pred -----------CHHHHhhheEEecccCccCCCccHHHHHHhcCccCCC-----------------------------cHH
Confidence 1112245699999998655 57999999875311000 000
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHHHHHHH
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~-------~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
..+++.++++.+++.... ......||||||||++|||||+. +|++|||||||++||+.+...+.
T Consensus 103 ~~~~~~~~l~~~~l~~~~---------~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~ 173 (248)
T PRK03695 103 VASALNEVAEALGLDDKL---------GRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALD 173 (248)
T ss_pred HHHHHHHHHHHcCCHhHh---------cCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHH
Confidence 123456677776664322 23456799999999999999997 77999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++ ..++||++++|++|+.
T Consensus 174 ~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i 211 (248)
T PRK03695 174 RLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKL 211 (248)
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 88864 5899999999987 5578999999999975
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=356.02 Aligned_cols=227 Identities=21% Similarity=0.275 Sum_probs=165.5
Q ss_pred CcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.+|+++|+++.|+.+ +.++|+|+||+|++||++|||||||||||||+++|+|+++|++|+|.++|.+..+- +.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~-----~~ 85 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRR-----SR 85 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccc-----cc
Confidence 379999999999632 24699999999999999999999999999999999999999999999865321000 00
Q ss_pred chhhhcccccccchhcccccC-cceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+. .++........... ++.||||+|+| .++. .|+.||+.++.... .+.
T Consensus 86 ~~-----~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~-----------~~~------------ 137 (623)
T PRK10261 86 QV-----IELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH-----------QGA------------ 137 (623)
T ss_pred cc-----cccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh-----------cCC------------
Confidence 00 00000000011112 24699999998 5665 59999998741100 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++|+.+++.... +.......+|||||||||+|||||+.+|++|||||||++||+.+.+.+
T Consensus 138 ----~~~~~~~~~~~~l~~~gL~~~~------~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l 207 (623)
T PRK10261 138 ----SREEAMVEAKRMLDQVRIPEAQ------TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQI 207 (623)
T ss_pred ----CHHHHHHHHHHHHHHCCCCChh------hHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHH
Confidence 0001124567778888774210 011345678999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.+.|++ .|+|+|+|||+++.+ .+||||++|++|+..
T Consensus 208 ~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~ 248 (623)
T PRK10261 208 LQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248 (623)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec
Confidence 888764 389999999998765 689999999999763
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-36 Score=313.32 Aligned_cols=194 Identities=22% Similarity=0.248 Sum_probs=148.1
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
+.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 23 l~~~~~~~~~~--~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~---~~---------- 87 (224)
T cd03220 23 LGILGRKGEVG--EFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV---SS---------- 87 (224)
T ss_pred hhhhhhhhhcC--CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE---ch----------
Confidence 77889999995 4679999999999999999999999999999999999999999999995432 10
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
......+ +.++.|++||+.++....... ...
T Consensus 88 ---------------~~~~~~~------~~~~~tv~enl~~~~~~~~~~----------------------------~~~ 118 (224)
T cd03220 88 ---------------LLGLGGG------FNPELTGRENIYLNGRLLGLS----------------------------RKE 118 (224)
T ss_pred ---------------hhccccc------CCCCCcHHHHHHHHHHHcCCC----------------------------HHH
Confidence 0000111 123569999997642100000 000
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|.+
T Consensus 119 ~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~ 189 (224)
T cd03220 119 IDEKIDEIIEFSELGDFI---------DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL 189 (224)
T ss_pred HHHHHHHHHHHcCChhhh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 112345566665554322 233567999999999999999999999999999999999999999988864
Q ss_pred -cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 -AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+.+ .+||++++|++|+.
T Consensus 190 ~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 190 KQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 579999999998765 67999999998863
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=347.98 Aligned_cols=214 Identities=21% Similarity=0.334 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++||+++|+. +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.+.....
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~------- 331 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRN------- 331 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCC-------
Confidence 6999999999953 23569999999999999999999999999999999999999 59999999643321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
.....++.++||+|++ .++. .|+.||+.++.... .. . .
T Consensus 332 ---------------~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-~~---------~-------------~ 373 (506)
T PRK13549 332 ---------------PQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-FT---------G-------------G 373 (506)
T ss_pred ---------------HHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-hc---------c-------------C
Confidence 0012245699999996 3554 59999998752100 00 0 0
Q ss_pred ccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
+........+++.+.++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+.+.+
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l 444 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASP---------ELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEI 444 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCc---------ccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHH
Confidence 0000000123466777777663 221 334677999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 445 ~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i 483 (506)
T PRK13549 445 YKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKL 483 (506)
T ss_pred HHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 888753 699999999998765 68999999999875
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-36 Score=348.86 Aligned_cols=215 Identities=24% Similarity=0.356 Sum_probs=161.8
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
+|+++||+++|+++ ++++|+|+||+|++||++||+||||||||||+|+|+|+++| ++|+|.++|.+.....
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~-- 82 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS-- 82 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCC--
Confidence 69999999999632 25799999999999999999999999999999999999987 7999999654322110
Q ss_pred CCccchhhhcccccccchhcccccC-cceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRN-SRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~-r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
....... ++.+|||||++. ++. .|+.+|+.++.... .+.
T Consensus 83 ------------------~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~-----------~~~-------- 125 (529)
T PRK15134 83 ------------------EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH-----------RGM-------- 125 (529)
T ss_pred ------------------HHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh-----------cCC--------
Confidence 0000112 246999999985 443 48888875421000 000
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
......+++.++++.+++..... .......+||||||||++|||||+.+|++||||||||+||+.+
T Consensus 126 --------~~~~~~~~~~~~l~~~gl~~~~~------~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~ 191 (529)
T PRK15134 126 --------RREAARGEILNCLDRVGIRQAAK------RLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSV 191 (529)
T ss_pred --------CHHHHHHHHHHHHHHCCCCChHH------HHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHH
Confidence 00011245677888877753110 0123467799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
...+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 192 ~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i 235 (529)
T PRK15134 192 QAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRC 235 (529)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEE
Confidence 9999988864 389999999998765 68999999999864
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=346.44 Aligned_cols=219 Identities=21% Similarity=0.282 Sum_probs=163.7
Q ss_pred CcEEEeeeEEEcCC---CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe-eccCcccccCCC
Q 040758 497 KLLDIEDLTLKTPT---SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY-VKDREETDAHTS 572 (788)
Q Consensus 497 ~~I~~~nvsf~y~~---~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~-~~~~~~i~~~~~ 572 (788)
.+|+++||+++|++ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+..++.
T Consensus 278 ~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~---- 353 (520)
T TIGR03269 278 PIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT---- 353 (520)
T ss_pred ceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccc----
Confidence 36999999999953 23569999999999999999999999999999999999999999999995 32211111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
..........++.|+||||++.+|. .|+.||+.++... ...
T Consensus 354 -------------~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~-~~~------------------------ 395 (520)
T TIGR03269 354 -------------KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGL-ELP------------------------ 395 (520)
T ss_pred -------------ccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHc-CCC------------------------
Confidence 0000000123456999999998886 4999999753100 000
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.....+++.++++.+++..... -+.......+||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 396 ----~~~~~~~~~~~l~~~~l~~~~~----~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~ 467 (520)
T TIGR03269 396 ----DELARMKAVITLKMVGFDEEKA----EEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVT 467 (520)
T ss_pred ----HHHHHHHHHHHHHhCCCCCccc----hhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 0001234566777776642100 00113446779999999999999999999999999999999999999999
Q ss_pred HHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 468 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 468 HSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred HHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 98853 489999999998765 68999999998864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=347.75 Aligned_cols=223 Identities=23% Similarity=0.281 Sum_probs=162.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 6 ~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~---------------- 68 (556)
T PRK11819 6 IYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP---------------- 68 (556)
T ss_pred EEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 6999999999962 36799999999999999999999999999999999999999999998731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccc-cchhhH-HHHhcC-Cccchh----hhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEE-VKPASD-AAKSAG-LVPFLT----SAQKLE 649 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~-~~~~~~-aa~~~~-~~~~i~----~~~~~~ 649 (788)
+..||||+|++.+++. |+.||+.++..... ...... ...... ..+... ....+.
T Consensus 69 ------------------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (556)
T PRK11819 69 ------------------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQ 130 (556)
T ss_pred ------------------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 1349999999998865 99999987521100 000000 000000 000000 000000
Q ss_pred -hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 -NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 -~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
............++.++++.+++.. ......+|||||||||+|||||+.+|++||||||||+||+.+..
T Consensus 131 ~~~~~~~~~~~~~~~~~~l~~~gl~~----------~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~ 200 (556)
T PRK11819 131 EIIDAADAWDLDSQLEIAMDALRCPP----------WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVA 200 (556)
T ss_pred HHHHhcCccchHHHHHHHHHhCCCCc----------ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHH
Confidence 0000000111345666777766632 12345679999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++.+.|+|+|||+++.+ ..||+|++|++|+.
T Consensus 201 ~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 201 WLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 99999988667999999998765 57999999999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-36 Score=312.54 Aligned_cols=192 Identities=26% Similarity=0.288 Sum_probs=147.1
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD----GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p----~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|. ++.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~---~~~---------------------- 55 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR---PLL---------------------- 55 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCE---ech----------------------
Confidence 57999999999999999999999999999999999999 8999999543 331
Q ss_pred ccccCcceEEEEccccc-cCC--CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHH
Q 040758 591 SMNRNSRGVFFLPQRPY-MVL--GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~-lf~--~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 667 (788)
.....++.++|++|++. .|. .|+.+|+.+.... .+. ......+++.+.+
T Consensus 56 ~~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~------------~~~----------------~~~~~~~~~~~~l 107 (230)
T TIGR02770 56 PLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRS------------LGK----------------LSKQARALILEAL 107 (230)
T ss_pred hhhhhhheeEEEecCchhhcCcccCHHHHHHHHHHH------------cCc----------------cHHHHHHHHHHHH
Confidence 00112356999999985 343 5888888542100 000 0001124566777
Q ss_pred HhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEE
Q 040758 668 EDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYIS 743 (788)
Q Consensus 668 ~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~ 743 (788)
+.+++... -+.....+..||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+
T Consensus 108 ~~~~l~~~------~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii 181 (230)
T TIGR02770 108 EAVGLPDP------EEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181 (230)
T ss_pred HHcCCCch------HHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 77766421 0112345678999999999999999999999999999999999999999888864 3899999
Q ss_pred EecCcchh-hcCCEEEEEccCCC
Q 040758 744 VGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+||+++.+ ..||++++|++|+.
T Consensus 182 ~sH~~~~~~~~~d~i~~l~~G~i 204 (230)
T TIGR02770 182 ITHDLGVVARIADEVAVMDDGRI 204 (230)
T ss_pred EeCCHHHHHHhCCEEEEEECCEE
Confidence 99998765 68999999999874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=348.18 Aligned_cols=218 Identities=22% Similarity=0.328 Sum_probs=161.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCCceEEEeecc-------------
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGRGKITFYVKD------------- 563 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~G~I~~~~~~------------- 563 (788)
|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.+++..
T Consensus 1 l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFD--GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEEC--CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 57899999995 457999999999999999999999999999999999996 7999999996311
Q ss_pred -------CcccccCCCccchhhhcccccccchhcccccCcceEEEEccc-cccCC-CCHHHHhcCCCCccccchhhHHHH
Q 040758 564 -------REETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR-PYMVL-GSLRQQLIYPTWTEEVKPASDAAK 634 (788)
Q Consensus 564 -------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~-~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~ 634 (788)
|.++.. ...+............++.++||+|+ +.+|. .|++||+.++....
T Consensus 79 g~~~~~~g~~~~~----------~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---------- 138 (520)
T TIGR03269 79 GEPCPVCGGTLEP----------EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---------- 138 (520)
T ss_pred ccccccccccccc----------cchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc----------
Confidence 111100 00000000000111235679999998 56775 59999997641100
Q ss_pred hcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040758 635 SAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVL 714 (788)
Q Consensus 635 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLi 714 (788)
+. ......+++.++++.++++...+ ....+|||||||||+|||||+.+|++||
T Consensus 139 --~~----------------~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGq~qrv~iA~al~~~p~lll 191 (520)
T TIGR03269 139 --GY----------------EGKEAVGRAVDLIEMVQLSHRIT---------HIARDLSGGEKQRVVLARQLAKEPFLFL 191 (520)
T ss_pred --CC----------------CHHHHHHHHHHHHHHcCChhhhh---------cCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 00 00001235667788877754322 3457799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 715 LDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 715 LDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|||||++||+.+.+.+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 192 LDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i 247 (520)
T TIGR03269 192 ADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEI 247 (520)
T ss_pred eeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 9999999999999999887753 489999999999876 67999999999875
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=345.56 Aligned_cols=214 Identities=19% Similarity=0.265 Sum_probs=160.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 265 ~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~---------- 330 (510)
T PRK09700 265 VFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPR---------- 330 (510)
T ss_pred EEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCC----------
Confidence 699999998762 389999999999999999999999999999999999999999999964321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.+|||||++ .+|. .|+.||+.++...... +.... .+.
T Consensus 331 ------------~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~---------~~~ 379 (510)
T PRK09700 331 ------------SPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKGA---------MGL 379 (510)
T ss_pred ------------CHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccc----------ccccc---------ccc
Confidence 00112345699999984 4665 5999999875321000 00000 000
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.++++.+++. ... .....+|||||||||+|||||+.+|++||||||||+||+.+...+.+
T Consensus 380 ~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 380 FHEVDEQRTAENQRELLALKCHSV---------NQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred cChHHHHHHHHHHHHhcCCCCCCc---------cCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 00000123456777777663 222 33467799999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 487 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRL 487 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEE
Confidence 8864 58999999999865 468999999999864
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.96 Aligned_cols=215 Identities=29% Similarity=0.394 Sum_probs=167.6
Q ss_pred CCcEEEeeeEEEcCCC---------CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcc
Q 040758 496 QKLLDIEDLTLKTPTS---------KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREE 566 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~---------~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~ 566 (788)
...++.+||.+.||-. ...+++++||++++||++||||+||||||||-..|.|+.+++ |+|.++|.+...
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 4478999999998742 124789999999999999999999999999999999999987 999995444322
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccC---CCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV---LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf---~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
. .....+.+|+.+-+||||||=- ..||.+-|.-|-.- |+
T Consensus 353 ~--------------------~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~v---------------h~--- 394 (534)
T COG4172 353 L--------------------SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRV---------------HE--- 394 (534)
T ss_pred c--------------------ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhh---------------cC---
Confidence 2 1223446788899999999731 13555544322110 00
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
........++.+.++|+.+|++. ++.+.++.++|||||||||||||++-+|++++|||||||||
T Consensus 395 --------~~ls~~eR~~rv~~aL~EVGLDp--------~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 395 --------PKLSAAERDQRVIEALEEVGLDP--------ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred --------CCCCHHHHHHHHHHHHHHcCCCh--------hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 00011123456889999988764 23456788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 724 EANEAHLYEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 724 ~~se~~i~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.....+|.+.|++ .|.+.++||||+.+++ .||+++||.+|+.
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki 505 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505 (534)
T ss_pred HHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE
Confidence 9999999998864 5999999999999875 7999999999975
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=344.56 Aligned_cols=215 Identities=22% Similarity=0.294 Sum_probs=162.2
Q ss_pred cEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++|++++|+. +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.+....
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~-------- 328 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIR-------- 328 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCC--------
Confidence 6999999999943 135699999999999999999999999999999999999995 899999964332100
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
......++++|||+|++ .++. .|+++|+.++.... .. ..
T Consensus 329 --------------~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~-~~---------~~------------- 371 (500)
T TIGR02633 329 --------------NPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKS-FC---------FK------------- 371 (500)
T ss_pred --------------CHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhh-hc---------cC-------------
Confidence 00112356799999996 3565 59999998753210 00 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.........+++.+.++.+++... ........||||||||++|||||+.+|++|||||||++||+.+...++
T Consensus 372 ~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 443 (500)
T TIGR02633 372 MRIDAAAELQIIGSAIQRLKVKTA--------SPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIY 443 (500)
T ss_pred CcCCHHHHHHHHHHHHHhcCccCC--------CccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHH
Confidence 000000012346677887766321 112345679999999999999999999999999999999999999998
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|++||+++.+ ++||++++|++|+.
T Consensus 444 ~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i 481 (500)
T TIGR02633 444 KLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKL 481 (500)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 77653 689999999998755 68999999998864
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=344.08 Aligned_cols=223 Identities=24% Similarity=0.307 Sum_probs=159.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~-~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~---------------- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP-KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP---------------- 66 (552)
T ss_pred EEEEeeEEEecCC-CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 6999999999962 35799999999999999999999999999999999999999999998731
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccc--cchhhHHHHhcCC-ccch----hhhhhhh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEE--VKPASDAAKSAGL-VPFL----TSAQKLE 649 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~--~~~~~~aa~~~~~-~~~i----~~~~~~~ 649 (788)
+..||||+|++.++. .|++||+.++..... ............. .... .....+.
T Consensus 67 ------------------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (552)
T TIGR03719 67 ------------------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128 (552)
T ss_pred ------------------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 135999999999886 599999987531100 0000000000000 0000 0000000
Q ss_pred h-hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 N-VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
. +...+.......+.++++.+++.. ......+||||||||++|||||+.+|++|||||||++||+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~ 198 (552)
T TIGR03719 129 EIIDAADAWDLDRKLEIAMDALRCPP----------WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVA 198 (552)
T ss_pred HHHHhcCcchhHHHHHHHHhhCCCCc----------ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHH
Confidence 0 000000000123444555544421 13346789999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 729 HLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 729 ~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.+.|++.+.|+|+|||+++.+ ..||++++|++|+.
T Consensus 199 ~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 199 WLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred HHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 99999988667999999998766 57999999999874
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=345.94 Aligned_cols=212 Identities=24% Similarity=0.356 Sum_probs=161.7
Q ss_pred cEEEeeeEEEcCC---------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccc
Q 040758 498 LLDIEDLTLKTPT---------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETD 568 (788)
Q Consensus 498 ~I~~~nvsf~y~~---------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~ 568 (788)
+|+++||+++|+. +++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+.....
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccc
Confidence 6999999999962 13579999999999999999999999999999999999995 8999999654322110
Q ss_pred cCCCccchhhhcccccccchhcccccCcceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 569 AHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
......+++.++||||++ .++. .|+.||+.++..... . .
T Consensus 354 --------------------~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-----------~---~---- 395 (529)
T PRK15134 354 --------------------RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-----------P---T---- 395 (529)
T ss_pred --------------------hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-----------c---c----
Confidence 000112345799999998 3665 599999976411000 0 0
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~ 724 (788)
.......+.+.+.++.+++. ... .....+||||||||++|||||+.+|++|||||||++||+
T Consensus 396 --------~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 396 --------LSAAQREQQVIAVMEEVGLDPETR---------HRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred --------CChHHHHHHHHHHHHHcCCCHHHH---------hcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 00000123456777777664 121 234677999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 725 ANEAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 725 ~se~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+...+.+.|++ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i 504 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 999999998863 389999999998765 67999999999875
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=342.76 Aligned_cols=224 Identities=18% Similarity=0.227 Sum_probs=163.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 1 ml~i~~ls~~~~--~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~---------------- 62 (530)
T PRK15064 1 MLSTANITMQFG--AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP---------------- 62 (530)
T ss_pred CEEEEEEEEEeC--CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----------------
Confidence 378999999996 45799999999999999999999999999999999999999999999831
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCcc-ccchhhHHH-H--hcCCccchhhhhhhhhhc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTE-EVKPASDAA-K--SAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~-~~~~~~~aa-~--~~~~~~~i~~~~~~~~~~ 652 (788)
+..|||++|++.+|.. |++||+.++.... ......+.+ . .....+.+...+..+...
T Consensus 63 ------------------~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (530)
T PRK15064 63 ------------------NERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFA 124 (530)
T ss_pred ------------------CCEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHH
Confidence 1249999999988864 9999998753110 000000000 0 000000000000000011
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
........+++.++++.+++..... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 125 ~~~~~~~~~~~~~~l~~~gl~~~~~--------~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~ 196 (530)
T PRK15064 125 EMDGYTAEARAGELLLGVGIPEEQH--------YGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLED 196 (530)
T ss_pred hcCchhHHHHHHHHHHhCCCChhHh--------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHH
Confidence 1111112345667788777643111 12356799999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.+.|.|+|+|||+++.+ +.||+|++|++|+.
T Consensus 197 ~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i 230 (530)
T PRK15064 197 VLNERNSTMIIISHDRHFLNSVCTHMADLDYGEL 230 (530)
T ss_pred HHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEE
Confidence 9988899999999998765 68999999999875
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=289.38 Aligned_cols=220 Identities=25% Similarity=0.304 Sum_probs=168.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+.++|+ ...+|+++||+.++|+.+.|+|.|||||||++++|.=+..|+.|+|.++ |+++.++.+.....
T Consensus 6 ~l~v~dlHK~~G--~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~---geei~~k~~~~G~l 80 (256)
T COG4598 6 ALEVEDLHKRYG--EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVN---GEEIRLKRDKDGQL 80 (256)
T ss_pred ceehhHHHhhcc--cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEEC---CeEEEeeeCCCCCe
Confidence 488999999996 4679999999999999999999999999999999999999999999995 55555433221111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+.....++|.+.|+|+|+..|.+ .|+.||+.-.-... ++ ..+
T Consensus 81 -------~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--------------------------Lg-~~k 126 (256)
T COG4598 81 -------KPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--------------------------LG-VSK 126 (256)
T ss_pred -------eeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--------------------------hc-CCH
Confidence 11122334467788999999999984 69999985321100 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH--
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI-- 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L-- 734 (788)
....+..+..|.++|+.+ ....++..|||||+||+||||||..+|+++++|||||||||+-.-++.+.+
T Consensus 127 ~ea~e~Ae~~L~kVGi~e---------k~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~ 197 (256)
T COG4598 127 AEAIERAEKYLAKVGIAE---------KADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD 197 (256)
T ss_pred HHHHHHHHHHHHHhCchh---------hhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence 111233455666666543 234567889999999999999999999999999999999999988776655
Q ss_pred -HhcCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 735 -EAAGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.++|+|.+++||.+.+.+ .+.+++.|++|..
T Consensus 198 LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 198 LAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred HHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 458999999999998875 5899999999964
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=321.46 Aligned_cols=210 Identities=21% Similarity=0.301 Sum_probs=167.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++++++.|| +-.+++||||+|++||+.||.|+||||||||+++|.|+|+|++|+|.++| +.+..
T Consensus 4 ~l~~~~itK~f~--~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G---~~v~~-------- 70 (501)
T COG3845 4 ALEMRGITKRFP--GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRI-------- 70 (501)
T ss_pred eEEEeccEEEcC--CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECC---EEecc--------
Confidence 489999999998 56789999999999999999999999999999999999999999999954 44321
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+.+..+..||+|+|.+.|++. |+.|||..|...... .. ...
T Consensus 71 -----------~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~-------------~~------------~~~ 114 (501)
T COG3845 71 -----------KSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKG-------------GL------------IDR 114 (501)
T ss_pred -----------CCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccc-------------cc------------cCH
Confidence 11333567789999999999976 999999988643100 00 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+..++.|+.-. .......||-||||||.|-+||+++|++||||||||-|-|...+++++.|++
T Consensus 115 ~~~~~~i~~l~~~yGl~vd---------p~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~ 185 (501)
T COG3845 115 RQARARIKELSERYGLPVD---------PDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRR 185 (501)
T ss_pred HHHHHHHHHHHHHhCCCCC---------ccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 0112345555555544321 2345677999999999999999999999999999999999999999888764
Q ss_pred ---cCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
.|+|||+|||++. ..+.|||+-||..|+-
T Consensus 186 l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkv 218 (501)
T COG3845 186 LAAEGKTIIFITHKLKEVMAIADRVTVLRRGKV 218 (501)
T ss_pred HHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeE
Confidence 7999999999985 5678999999999964
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=280.73 Aligned_cols=143 Identities=31% Similarity=0.491 Sum_probs=129.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++++|++++|++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~----------------- 61 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----------------- 61 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC-----------------
Confidence 468999999963 4799999999999999999999999999999999999999999999842
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
+..++|++|
T Consensus 62 -----------------~~~i~~~~~------------------------------------------------------ 70 (144)
T cd03221 62 -----------------TVKIGYFEQ------------------------------------------------------ 70 (144)
T ss_pred -----------------eEEEEEEcc------------------------------------------------------
Confidence 123677655
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcC
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAG 738 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g 738 (788)
||+||+||++|||||+++|+++||||||++||+.+...+.+.+++.+
T Consensus 71 ---------------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 117 (144)
T cd03221 71 ---------------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP 117 (144)
T ss_pred ---------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999998878
Q ss_pred CEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 739 ITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 739 ~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+|+|++||+.+.+ ..||++++|++|+
T Consensus 118 ~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 118 GTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 8999999998766 6799999999875
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=303.59 Aligned_cols=173 Identities=30% Similarity=0.455 Sum_probs=143.9
Q ss_pred cEEEeeeEEEcCCCC-------ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPTSK-------ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~-------~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|+.+. ..+++||||+|++||+++|||+||||||||-|+|+|+++|++|+|+++|.|+..+
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~--- 80 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL--- 80 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhc---
Confidence 589999999997532 2689999999999999999999999999999999999999999999964432111
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. + .
T Consensus 81 -------------------------~-----------------~--------~--------------------------- 83 (268)
T COG4608 81 -------------------------S-----------------K--------E--------------------------- 83 (268)
T ss_pred -------------------------c-----------------h--------h---------------------------
Confidence 0 0 0
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
...+++.+.|+.+|+.. +....++.+|||||||||+|||||+-+|+++++|||||+||...+++|
T Consensus 84 -------~~~~~v~elL~~Vgl~~--------~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI 148 (268)
T COG4608 84 -------ERRERVLELLEKVGLPE--------EFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI 148 (268)
T ss_pred -------HHHHHHHHHHHHhCCCH--------HHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH
Confidence 01245777888877542 112455788999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.+.|.+ .|.|.++|||++++++ .||||.||..|+.
T Consensus 149 lnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~i 188 (268)
T COG4608 149 LNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKI 188 (268)
T ss_pred HHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCce
Confidence 988753 5999999999999886 5999999999975
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=306.93 Aligned_cols=181 Identities=25% Similarity=0.296 Sum_probs=143.2
Q ss_pred EEcCCCCccceeeeeEEEe-----CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 506 LKTPTSKATLVRDLSLVIN-----EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i~-----~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
|+||+ ..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 ~~y~~-~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g------------------- 60 (246)
T cd03237 1 YTYPT-MKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL------------------- 60 (246)
T ss_pred CCCcc-cccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECC-------------------
Confidence 56764 3457888888887 7999999999999999999999999999999999831
Q ss_pred ccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
..|+|++|++.. +..|++||+.+..... ...
T Consensus 61 ----------------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--------------------------------~~~ 92 (246)
T cd03237 61 ----------------DTVSYKPQYIKADYEGTVRDLLSSITKDF--------------------------------YTH 92 (246)
T ss_pred ----------------ceEEEecccccCCCCCCHHHHHHHHhhhc--------------------------------ccc
Confidence 138999999874 5789999986421100 000
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
.....++++.+++.... .....+||||||||++|||||+++|+++||||||++||+.+...+.+.|++
T Consensus 93 ~~~~~~~l~~l~l~~~~---------~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~ 163 (246)
T cd03237 93 PYFKTEIAKPLQIEQIL---------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE 163 (246)
T ss_pred HHHHHHHHHHcCCHHHh---------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH
Confidence 12234456655554322 234567999999999999999999999999999999999999999888764
Q ss_pred -cCCEEEEEecCcchhh-cCCEEEEEccC
Q 040758 737 -AGITYISVGHRRTLYD-FHKRVLRISTV 763 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~-~~D~Ilvl~~g 763 (788)
.|+|+|+|||+++.+. .||++++|+++
T Consensus 164 ~~~~tiiivsHd~~~~~~~~d~i~~l~~~ 192 (246)
T cd03237 164 NNEKTAFVVEHDIIMIDYLADRLIVFEGE 192 (246)
T ss_pred hcCCEEEEEeCCHHHHHHhCCEEEEEcCC
Confidence 3899999999987764 79999999753
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=301.09 Aligned_cols=183 Identities=26% Similarity=0.332 Sum_probs=142.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++. ..++.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~---~~~-------------------------~~~~~i~ 52 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA---SPG-------------------------KGWRHIG 52 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc---cch-------------------------HhhCcEE
Confidence 578999999999999999999999999999999999999543 221 1245699
Q ss_pred EEcccccc---CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 601 FLPQRPYM---VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 601 ~v~Q~~~l---f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
|+||++.+ +..|+.||+.++..... +. .. .......+++.++++.+++....
T Consensus 53 ~v~q~~~~~~~~~~tv~~~l~~~~~~~~-----------~~------------~~-~~~~~~~~~~~~~l~~~~l~~~~- 107 (223)
T TIGR03771 53 YVPQRHEFAWDFPISVAHTVMSGRTGHI-----------GW------------LR-RPCVADFAAVRDALRRVGLTELA- 107 (223)
T ss_pred EecccccccCCCCccHHHHHHhcccccc-----------cc------------cc-CCcHHHHHHHHHHHHHhCCchhh-
Confidence 99999876 35799999987522100 00 00 00001124566778877765332
Q ss_pred cCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchh-hc
Q 040758 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLY-DF 753 (788)
Q Consensus 678 ~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~ 753 (788)
.....+||||||||++|||||+++|++|||||||++||+.+.+.+.+.|++ .|+|+|++||+++.+ +.
T Consensus 108 --------~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 108 --------DRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMAT 179 (223)
T ss_pred --------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 234567999999999999999999999999999999999999999998864 589999999998754 68
Q ss_pred CCEEEEEccCCC
Q 040758 754 HKRVLRISTVDQ 765 (788)
Q Consensus 754 ~D~Ilvl~~g~~ 765 (788)
||+++++ +|+.
T Consensus 180 ~d~i~~l-~G~i 190 (223)
T TIGR03771 180 CDRVVLL-NGRV 190 (223)
T ss_pred CCEEEEE-CCEE
Confidence 9999999 6764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=335.67 Aligned_cols=192 Identities=23% Similarity=0.335 Sum_probs=158.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 318 ~~l~~~~l~~~~~--~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 380 (530)
T PRK15064 318 NALEVENLTKGFD--NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE--------------- 380 (530)
T ss_pred ceEEEEeeEEeeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------
Confidence 4799999999996 35699999999999999999999999999999999999999999999831
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc--cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY--MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~--lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
++.+||++|++. ++. .|+++|+.+....
T Consensus 381 -------------------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~------------------------------ 411 (530)
T PRK15064 381 -------------------NANIGYYAQDHAYDFENDLTLFDWMSQWRQE------------------------------ 411 (530)
T ss_pred -------------------ceEEEEEcccccccCCCCCcHHHHHHHhccC------------------------------
Confidence 135999999974 443 5999988531100
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
....+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 412 ---~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 479 (530)
T PRK15064 412 ---GDDEQAVRGTLGRLLFSQDD---------IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM 479 (530)
T ss_pred ---CccHHHHHHHHHHcCCChhH---------hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 01224566677776652 11 133467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 733 QIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 733 ~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|++.+.|+|+|||+.+.+ .+||++++|++|+..
T Consensus 480 ~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 480 ALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVV 514 (530)
T ss_pred HHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEE
Confidence 9988777999999998765 579999999998754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=367.95 Aligned_cols=208 Identities=22% Similarity=0.261 Sum_probs=168.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~d---I~-------- 995 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKD---IE-------- 995 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEE---Cc--------
Confidence 4699999999996445679999999999999999999999999999999999999999999996443 31
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. .....|+.+||+||++.+|+. |++||+.++.... +. .
T Consensus 996 ---------~----~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk------------g~----------------~ 1034 (2272)
T TIGR01257 996 ---------T----NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK------------GR----------------S 1034 (2272)
T ss_pred ---------c----hHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc------------CC----------------C
Confidence 0 111345679999999999964 9999998631100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.+.++.++++... +....+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+
T Consensus 1035 ~~~~~~~v~~lL~~vgL~~~~---------~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~ 1105 (2272)
T TIGR01257 1035 WEEAQLEMEAMLEDTGLHHKR---------NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLL 1105 (2272)
T ss_pred HHHHHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 001124567778887765432 34467899999999999999999999999999999999999999999887
Q ss_pred h--cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|++||+++.+ ..||||++|++|+.
T Consensus 1106 ~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL 1138 (2272)
T TIGR01257 1106 KYRSGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138 (2272)
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 5 589999999998766 57999999999975
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=344.07 Aligned_cols=211 Identities=26% Similarity=0.318 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.+.....
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~------- 76 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLD------- 76 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCC-------
Confidence 69999999999642 246999999999999999999999999999999999999999999999654322110
Q ss_pred hhhhcccccccchhcccc-cCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMN-RNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~-~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..... ..++.++|++|++.+|+ .|+.||+.++.... +.
T Consensus 77 -------------~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~------------~~--------------- 116 (648)
T PRK10535 77 -------------ADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA------------GL--------------- 116 (648)
T ss_pred -------------HHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc------------CC---------------
Confidence 00000 12467999999999996 59999998632100 00
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.....++++.+.++.++++... +..+.+|||||+||++|||||+++|++|||||||++||+.+.+.+.+.
T Consensus 117 -~~~~~~~~~~~~l~~lgl~~~~---------~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 117 -ERKQRLLRAQELLQRLGLEDRV---------EYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred -CHHHHHHHHHHHHHHCCChhhh---------cCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 0001123456677777665432 233567999999999999999999999999999999999999999988
Q ss_pred HHh---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+++ .|+|+|++||+++..+.||++++|++|+.
T Consensus 187 l~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i 221 (648)
T PRK10535 187 LHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEI 221 (648)
T ss_pred HHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEE
Confidence 864 58999999999998888999999999975
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=306.00 Aligned_cols=181 Identities=21% Similarity=0.208 Sum_probs=140.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g------------------------------ 85 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------------------------------ 85 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC------------------------------
Confidence 34689999999999999999999999999999999999999999999842
Q ss_pred cccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
.+++++|++.++. .|+.+|+.++....... .....+.+.++++.+
T Consensus 86 ------~~~~~~~~~~~~~~~tv~enl~~~~~~~~~~----------------------------~~~~~~~~~~~l~~~ 131 (264)
T PRK13546 86 ------EVSVIAISAGLSGQLTGIENIEFKMLCMGFK----------------------------RKEIKAMTPKIIEFS 131 (264)
T ss_pred ------EEeEEecccCCCCCCcHHHHHHHHHHHcCCC----------------------------HHHHHHHHHHHHHHc
Confidence 1455677776654 59999997631100000 000011233445544
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHR 747 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr 747 (788)
+++... ...+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .|+|+|++||+
T Consensus 132 ~l~~~~---------~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~ 202 (264)
T PRK13546 132 ELGEFI---------YQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHN 202 (264)
T ss_pred CCchhh---------cCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 443322 234667999999999999999999999999999999999999999888754 58999999999
Q ss_pred cchh-hcCCEEEEEccCCC
Q 040758 748 RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 ~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.+ ..||+|++|++|+.
T Consensus 203 ~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 203 LGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred HHHHHHHcCEEEEEECCEE
Confidence 8765 67999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=342.33 Aligned_cols=205 Identities=24% Similarity=0.332 Sum_probs=158.2
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--CceEEEeeccCcccccCCCccchhh
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG--RGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~--~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
.+|++++|+ ++.+|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.+ +.
T Consensus 71 ~~~l~~~~~--~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~---~~---------- 135 (659)
T PLN03211 71 ISDETRQIQ--ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRK---PT---------- 135 (659)
T ss_pred cccccccCC--CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEE---Cc----------
Confidence 445555564 457999999999999999999999999999999999999985 8999996432 21
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...++.+|||+|++.++. .|++||+.+...... + ......
T Consensus 136 --------------~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~--------------~-----------~~~~~~ 176 (659)
T PLN03211 136 --------------KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRL--------------P-----------KSLTKQ 176 (659)
T ss_pred --------------hhhccceEEECcccccCCcCCHHHHHHHHHHhCC--------------C-----------CCCCHH
Confidence 012346999999999996 599999987421000 0 000000
Q ss_pred CChHHHHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.+.++.+++.... ++. + .....||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+
T Consensus 177 ~~~~~v~~~l~~lgL~~~~------~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~ 250 (659)
T PLN03211 177 EKILVAESVISELGLTKCE------NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLG 250 (659)
T ss_pred HHHHHHHHHHHHcCChhhc------CceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHH
Confidence 0113456677777775432 332 2 3467799999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+++|+++ ..+.+|++++|++|+.
T Consensus 251 ~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~i 285 (659)
T PLN03211 251 SLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285 (659)
T ss_pred HHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcE
Confidence 4 6999999999986 4678999999999864
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=334.66 Aligned_cols=209 Identities=20% Similarity=0.301 Sum_probs=158.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~--------- 320 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRS--------- 320 (501)
T ss_pred EEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCC---------
Confidence 689999984 3699999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++++|||||++ .++ ..|+.||+.++.... .. ... +.
T Consensus 321 -------------~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-~~---------~~~------------~~ 365 (501)
T PRK10762 321 -------------PQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRY-FS---------RAG------------GS 365 (501)
T ss_pred -------------HHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhh-hc---------ccc------------cc
Confidence 0012345699999997 355 469999998752100 00 000 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+.+.+.+
T Consensus 366 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~ 436 (501)
T PRK10762 366 LKHADEQQAVSDFIRLFNIKTPS---------MEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQ 436 (501)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCC---------ccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 00000123466777777663 22 234466799999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 733 QIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|++ +|+|+|++||+++.+ ++||++++|++|+..
T Consensus 437 ~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~ 474 (501)
T PRK10762 437 LINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRIS 474 (501)
T ss_pred HHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEE
Confidence 8864 589999999998754 689999999998753
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=334.22 Aligned_cols=209 Identities=17% Similarity=0.268 Sum_probs=157.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 257 ~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~--------- 321 (501)
T PRK11288 257 RLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS--------- 321 (501)
T ss_pred EEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCC---------
Confidence 5899999832 4899999999999999999999999999999999999999999999644321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccc---cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY---MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~---lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....++.++|+||++. +| ..|+.||+.++....... .+ +.
T Consensus 322 -------------~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~--------~~---~~----------- 366 (501)
T PRK11288 322 -------------PRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLR--------AG---CL----------- 366 (501)
T ss_pred -------------HHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcc--------cc---cc-----------
Confidence 01123456999999973 55 479999998743110000 00 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.......+++.+.++.+++. .. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+
T Consensus 367 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~ 437 (501)
T PRK11288 367 INNRWEAENADRFIRSLNIKTPS---------REQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYN 437 (501)
T ss_pred cChHHHHHHHHHHHHhcCcccCC---------ccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHH
Confidence 00000123456677777662 22 233466799999999999999999999999999999999999999998
Q ss_pred HHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|.|+|++||+++.+ ++||++++|++|+.
T Consensus 438 ~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i 474 (501)
T PRK11288 438 VIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRI 474 (501)
T ss_pred HHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEE
Confidence 8753 689999999998755 78999999999864
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=292.90 Aligned_cols=202 Identities=25% Similarity=0.346 Sum_probs=162.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++++|+++|+ ++.+++|+||++++|++.+++|||||||||.+++|+|+.+|++|+|.++| .+++
T Consensus 2 ~L~ie~vtK~Fg--~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g---~~~~--------- 67 (300)
T COG4152 2 ALEIEGVTKSFG--DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNG---GPLS--------- 67 (300)
T ss_pred ceEEecchhccC--ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcC---cchh---------
Confidence 489999999995 57899999999999999999999999999999999999999999999954 3332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+..|||+|.+-.|+. .|+.|.+.|-..-..+ ..
T Consensus 68 ---------------~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm----------------------------~~ 104 (300)
T COG4152 68 ---------------QEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGM----------------------------PK 104 (300)
T ss_pred ---------------hhhhhhcccChhhhccCccCcHHHHHHHHHHhcCC----------------------------cH
Confidence 123456999999999996 4999999883111000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
+....++...|+++++. +....+..+||-|.+|+|.+--+++++|+++|||||+|+|||.+.+.+-+.+.
T Consensus 105 ~e~~~~~~~wLer~~i~---------~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~ 175 (300)
T COG4152 105 AEIQKKLQAWLERLEIV---------GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFE 175 (300)
T ss_pred HHHHHHHHHHHHhcccc---------ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHH
Confidence 01112344555555443 33345567899999999999999999999999999999999999998888764
Q ss_pred --hcCCEEEEEecCcc-hhhcCCEEEEEccCCC
Q 040758 736 --AAGITYISVGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 --~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
+.|.|+|+.+||++ ..+.||+++.|++|..
T Consensus 176 lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~ 208 (300)
T COG4152 176 LKEEGATIIFSSHRMEHVEELCDRLLMLKKGQT 208 (300)
T ss_pred HHhcCCEEEEecchHHHHHHHhhhhheecCCce
Confidence 47999999999986 5578999999999964
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=297.55 Aligned_cols=188 Identities=24% Similarity=0.395 Sum_probs=155.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
-=++||+.+.-.++||-|+||||||||+|+|+|+..|++|+|.+||.-..|-. + ......-
T Consensus 14 ~l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~-------------k------~i~lp~~ 74 (352)
T COG4148 14 ALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAE-------------K------GIFLPPE 74 (352)
T ss_pred EEEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeeccc-------------C------CcccChh
Confidence 35788999887999999999999999999999999999999999654333321 0 1112234
Q ss_pred cceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.|||||||.-||. -||+-|++||.+.. ..+++.++...+|+++
T Consensus 75 ~RriGYVFQDARLFpH~tVrgNL~YG~~~~----------------------------------~~~~fd~iv~lLGI~h 120 (352)
T COG4148 75 KRRIGYVFQDARLFPHYTVRGNLRYGMWKS----------------------------------MRAQFDQLVALLGIEH 120 (352)
T ss_pred hheeeeEeeccccccceEEecchhhhhccc----------------------------------chHhHHHHHHHhCcHH
Confidence 677999999999995 69999999986532 2346667777778887
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCc-c
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRR-T 749 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~-~ 749 (788)
++++ ++.+|||||||||||+|||+.+|++|+||||.|+||....++++-.|++ -+.-++.+||.+ +
T Consensus 121 LL~R---------~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~E 191 (352)
T COG4148 121 LLDR---------YPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDE 191 (352)
T ss_pred HHhh---------CCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHH
Confidence 7665 4678999999999999999999999999999999999999999877753 488999999997 5
Q ss_pred hhhcCCEEEEEccCCC
Q 040758 750 LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 750 ~~~~~D~Ilvl~~g~~ 765 (788)
+.+.||++++|++|+.
T Consensus 192 v~RLAd~vV~le~GkV 207 (352)
T COG4148 192 VLRLADRVVVLENGKV 207 (352)
T ss_pred HHhhhheEEEecCCeE
Confidence 6789999999999975
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=332.00 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=157.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
..|+++|+++.|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|.++|.+ +.
T Consensus 259 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~---~~------- 326 (490)
T PRK10938 259 PRIVLNNGVVSYN--DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRR---RG------- 326 (490)
T ss_pred ceEEEeceEEEEC--CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEeccc---CC-------
Confidence 4699999999996 35699999999999999999999999999999999999876 79999996542 10
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+ ......+++|+|++|++.++. .|+.+++.++.... . +...
T Consensus 327 ---------~~---~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~----------~~~~------------ 371 (490)
T PRK10938 327 ---------SG---ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS-I----------GIYQ------------ 371 (490)
T ss_pred ---------CC---CCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccc-c----------cccc------------
Confidence 00 000123467999999986642 36666664331100 0 0000
Q ss_pred cCCCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+++.++++.+++.. .. .....+||||||||++|||||+.+|++|||||||++||+.+...+.
T Consensus 372 -~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 372 -AVSDRQQKLAQQWLDILGIDKRTA---------DAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred -CCCHHHHHHHHHHHHHcCCchhhc---------cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 000001234667788777653 22 2345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cC-CEEEEEecCcchhh--cCCEEEEEccCCC
Q 040758 732 EQIEA---AG-ITYISVGHRRTLYD--FHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g-~TvI~IaHr~~~~~--~~D~Ilvl~~g~~ 765 (788)
+.|++ .+ .|+|+|||+++.+. .||++++|++|+.
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i 481 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDI 481 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCce
Confidence 98864 44 57999999998764 4899999999863
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=321.89 Aligned_cols=196 Identities=17% Similarity=0.239 Sum_probs=151.0
Q ss_pred CcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+++++|++|+|+++. +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~---~-------- 88 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSA---A-------- 88 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEe---e--------
Confidence 3699999999997532 469999999999999999999999999999999999999999999985321 0
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
++.+.+.++ ..|++||+.+........
T Consensus 89 -------------------------~i~~~~~l~~~lTV~EnL~l~~~~~~~~--------------------------- 116 (549)
T PRK13545 89 -------------------------LIAISSGLNGQLTGIENIELKGLMMGLT--------------------------- 116 (549)
T ss_pred -------------------------eEEeccccCCCCcHHHHHHhhhhhcCCC---------------------------
Confidence 111223333 359999997632100000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.+.++++.++++...+ ..+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 117 -~~e~~e~i~elLe~lgL~~~ld---------~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL 186 (549)
T PRK13545 117 -KEKIKEIIPEIIEFADIGKFIY---------QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186 (549)
T ss_pred -HHHHHHHHHHHHHHcCChhHhh---------CCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0000123445666666653322 345679999999999999999999999999999999999999998888
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+ ..||++++|++|+.
T Consensus 187 ~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkI 221 (549)
T PRK13545 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQV 221 (549)
T ss_pred HHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 54 589999999998765 67999999999864
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=271.94 Aligned_cols=214 Identities=27% Similarity=0.332 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|++|.|+ ...+|.||+|+.+.||++.+.||||+|||||++.|.=+.-|.+|+..+.|+ ..+....
T Consensus 2 sirv~~in~~yg--~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~---~fd~s~~----- 71 (242)
T COG4161 2 SIQLNGINCFYG--AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGN---HFDFSKT----- 71 (242)
T ss_pred ceEEcccccccc--cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccc---ccccccC-----
Confidence 388999999996 457999999999999999999999999999999999999999999998432 2211000
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......++|+++|+|+|.-.|.+ .|+-||+.-. -+|..+. .+
T Consensus 72 ---------~~~k~i~~lr~~vgmvfqqy~lwphltv~enliea-----------p~kv~gl----------------~~ 115 (242)
T COG4161 72 ---------PSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEA-----------PCRVLGL----------------SK 115 (242)
T ss_pred ---------ccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhh-----------hHHHhCC----------------CH
Confidence 001123357889999999998874 6999998521 0111111 01
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.....+..+.|+.+.+..+.+ .++-.|||||+||+||||||+.+|++|++||||++|||+-...+.+.+++
T Consensus 116 ~qa~~~a~ellkrlrl~~~ad---------r~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iike 186 (242)
T COG4161 116 DQALARAEKLLKRLRLKPYAD---------RYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186 (242)
T ss_pred HHHHHHHHHHHHHhccccccc---------cCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence 112245667777777765544 45677999999999999999999999999999999999999998887765
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.|.|-+++||..++. +.|.+++.|++|+..
T Consensus 187 l~~tgitqvivthev~va~k~as~vvyme~g~iv 220 (242)
T COG4161 187 LAETGITQVIVTHEVEVARKTASRVVYMENGHIV 220 (242)
T ss_pred HHhcCceEEEEEeehhHHHhhhhheEeeecCeeE
Confidence 699999999998876 569999999999753
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=303.09 Aligned_cols=206 Identities=19% Similarity=0.192 Sum_probs=146.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
||+++|++ ++.+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|...+. .+.. ...+++.
T Consensus 5 ~~~~~y~~-~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~--~~~~-------~~~~~g~ 73 (255)
T cd03236 5 EPVHRYGP-NSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPD--WDEI-------LDEFRGS 73 (255)
T ss_pred CcceeecC-cchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccc--cchh-------hhhccCc
Confidence 68899963 3468999994 9999999999999999999999999999999999972100 0000 0001111
Q ss_pred ccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 662 (788)
++.... ....+....+++++|++.++..++.+|+...... ....+.
T Consensus 74 ~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~---------------------------------~~~~~~ 119 (255)
T cd03236 74 ELQNYF-TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKK---------------------------------KDERGK 119 (255)
T ss_pred hhhhhh-HHhhhcccceeeecchhccCchHHHHHHHHHhch---------------------------------hHHHHH
Confidence 111000 0000111247899998887776666666432000 001234
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.++++.+++.... ...+.+||||||||++|||||+.+|+++||||||++||+.+...+.+.|++ .++
T Consensus 120 ~~~~l~~~gl~~~~---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~ 190 (255)
T cd03236 120 LDELVDQLELRHVL---------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190 (255)
T ss_pred HHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 56667776654322 234567999999999999999999999999999999999999988888764 589
Q ss_pred EEEEEecCcchhh-cCCEEEEEcc
Q 040758 740 TYISVGHRRTLYD-FHKRVLRIST 762 (788)
Q Consensus 740 TvI~IaHr~~~~~-~~D~Ilvl~~ 762 (788)
|+|+|||+++.+. +||+|++|++
T Consensus 191 tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 191 YVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred EEEEEECCHHHHHHhCCEEEEECC
Confidence 9999999998765 7999999965
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=362.13 Aligned_cols=209 Identities=19% Similarity=0.228 Sum_probs=165.8
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|+++++.+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+ +.
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~---i~------- 2004 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKS---IL------- 2004 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEE---Cc-------
Confidence 34799999999996433679999999999999999999999999999999999999999999996443 21
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
......++.|||+||++.++. .|++||+.+.... .+.
T Consensus 2005 --------------~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l------------~g~---------------- 2042 (2272)
T TIGR01257 2005 --------------TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL------------RGV---------------- 2042 (2272)
T ss_pred --------------chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHh------------cCC----------------
Confidence 001123567999999999886 5999999752100 000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+...+.+.+.++.+++....+ ....+||||||||++|||||+.+|++|||||||+|||+.+++.+.+.|
T Consensus 2043 ~~~~~~~~v~~lLe~lgL~~~~d---------k~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL 2113 (2272)
T TIGR01257 2043 PAEEIEKVANWSIQSLGLSLYAD---------RLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTI 2113 (2272)
T ss_pred CHHHHHHHHHHHHHHcCCHHHhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHH
Confidence 00001133456677777654332 345679999999999999999999999999999999999999999987
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ +|+|+|++||+++.+ +.||||++|++|+.
T Consensus 2114 ~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2114 VSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 64 589999999998655 68999999999964
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=331.01 Aligned_cols=193 Identities=20% Similarity=0.222 Sum_probs=155.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++
T Consensus 321 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~--------------- 383 (552)
T TIGR03719 321 KVIEAENLSKGFG--DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE--------------- 383 (552)
T ss_pred eEEEEeeEEEEEC--CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC---------------
Confidence 4799999999996 35799999999999999999999999999999999999999999998720
Q ss_pred hhhcccccccchhcccccCcceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...|||++|++. ++. .|+.||+.++......
T Consensus 384 -------------------~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 416 (552)
T TIGR03719 384 -------------------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIQL---------------------------- 416 (552)
T ss_pred -------------------ceEEEEEeCCccccCCCCcHHHHHHhhcccccc----------------------------
Confidence 014999999973 554 5999999875311000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+..+.++.+++... .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 417 --~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 486 (552)
T TIGR03719 417 --GKREVPSRAYVGRFNFKGS--------DQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL 486 (552)
T ss_pred --CcchHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 0011233456666655311 012345779999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
++.+.|+|+|||+++.+ ++||+|++|++|
T Consensus 487 ~~~~~~viivsHd~~~~~~~~d~i~~l~~~ 516 (552)
T TIGR03719 487 LEFAGCAVVISHDRWFLDRIATHILAFEGD 516 (552)
T ss_pred HHCCCeEEEEeCCHHHHHHhCCEEEEEECC
Confidence 88656999999998765 579999999875
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=330.91 Aligned_cols=193 Identities=20% Similarity=0.223 Sum_probs=155.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 323 ~~l~~~~l~~~~~--~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 385 (556)
T PRK11819 323 KVIEAENLSKSFG--DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE--------------- 385 (556)
T ss_pred eEEEEEeEEEEEC--CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC---------------
Confidence 4799999999996 35799999999999999999999999999999999999999999998720
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...|||+||++ .++. .|+.||+.++......
T Consensus 386 -------------------~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---------------------------- 418 (556)
T PRK11819 386 -------------------TVKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---------------------------- 418 (556)
T ss_pred -------------------ceEEEEEeCchhhcCCCCCHHHHHHhhcccccc----------------------------
Confidence 01399999997 5554 5999999875211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+..++++.+++... .......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 419 --~~~~~~~~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 488 (556)
T PRK11819 419 --GNREIPSRAYVGRFNFKGG--------DQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEAL 488 (556)
T ss_pred --cccHHHHHHHHHhCCCChh--------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 0011233456666655310 012345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
.+.+.|+|+|||+++.+ .+||+|++|++|
T Consensus 489 ~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~ 518 (556)
T PRK11819 489 LEFPGCAVVISHDRWFLDRIATHILAFEGD 518 (556)
T ss_pred HhCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 88555999999998765 679999999874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=330.24 Aligned_cols=213 Identities=19% Similarity=0.283 Sum_probs=157.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.| +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+....
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~---------- 315 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH---------- 315 (491)
T ss_pred EEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCC----------
Confidence 69999999974 2589999999999999999999999999999999999999999999964332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccc---cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY---MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~---lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
......++.++|+||++. +|. .|+.+|+.+..... .+...+.
T Consensus 316 ------------~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~--------------- 361 (491)
T PRK10982 316 ------------NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRN-------YKNKVGL--------------- 361 (491)
T ss_pred ------------CHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhh-------hcccccc---------------
Confidence 011123456999999963 554 58887754421100 0000000
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......+.+.+.++.+++.. +.......+||||||||++||||++.+|+||||||||++||+.+...+++.
T Consensus 362 ~~~~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~ 433 (491)
T PRK10982 362 LDNSRMKSDTQWVIDSMRVKT--------PGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL 433 (491)
T ss_pred cCcHHHHHHHHHHHHhcCccC--------CCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHH
Confidence 000001234556677665531 112345678999999999999999999999999999999999999999888
Q ss_pred HH---hcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 734 IE---AAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~---~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
++ +.|+|+|+|||+++.+ ++||++++|++|+..
T Consensus 434 l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 434 IAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEE
Confidence 74 3699999999998755 689999999998764
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=282.37 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=171.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++.+++|+|++|++|.+++|+||||||||||+.+++|+.++++|+|.++|.+....
T Consensus 1 MI~i~nv~K~y~--~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~---------- 68 (252)
T COG4604 1 MITIENVSKSYG--TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTST---------- 68 (252)
T ss_pred CeeehhhhHhhC--CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccC----------
Confidence 478999999995 57899999999999999999999999999999999999999999999965544332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+-+.+.+.++++-|+..+-.. ||+|-+.||....+- .+..
T Consensus 69 -------------~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYSq--------------------------GRlt 109 (252)
T COG4604 69 -------------PSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQ--------------------------GRLT 109 (252)
T ss_pred -------------ChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCcccC--------------------------CCCc
Confidence 122345668889999887654 999999998654221 0111
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+...+.++++.+++..+.++ +-.+||||||||.-||..++++.+.++||||.++||-.....+++.|++
T Consensus 110 ~eD~~~I~~aieyl~L~~l~dr---------yLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrr 180 (252)
T COG4604 110 KEDRRIINEAIEYLHLEDLSDR---------YLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR 180 (252)
T ss_pred hHHHHHHHHHHHHhcccchHHH---------hHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHH
Confidence 2233446788888877765544 2356999999999999999999999999999999999999999988864
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+++|-|+..++ .|+|+|+-|++|+.
T Consensus 181 la~el~KtiviVlHDINfAS~YsD~IVAlK~G~v 214 (252)
T COG4604 181 LADELGKTIVVVLHDINFASCYSDHIVALKNGKV 214 (252)
T ss_pred HHHHhCCeEEEEEecccHHHhhhhheeeecCCEE
Confidence 599999999999887 58999999999975
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.94 Aligned_cols=228 Identities=25% Similarity=0.294 Sum_probs=169.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++|++++|+ ++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+
T Consensus 3 ~i~~~~ls~~~g--~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~---------------- 64 (530)
T COG0488 3 MITLENLSLAYG--DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK---------------- 64 (530)
T ss_pred eEEEeeeEEeeC--CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC----------------
Confidence 589999999995 67899999999999999999999999999999999999999999998620
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCcc-ccchhhHHHHhcCCccchhhhhhhhh-hccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTE-EVKPASDAAKSAGLVPFLTSAQKLEN-VGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~-~~~~~~~aa~~~~~~~~i~~~~~~~~-~~~~ 654 (788)
-..++|++|++.+.+. |+.+.+.-+.... ......+++......+.......++. ..+.
T Consensus 65 ------------------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 126 (530)
T COG0488 65 ------------------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126 (530)
T ss_pred ------------------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhh
Confidence 0239999999999965 9999998764331 11111111111000010011111111 1111
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.++..+|..+++... .....+||||||-|++|||||+.+|++|+|||||++||.++..++.+.|
T Consensus 127 ~~~~~e~~~~~~L~gLg~~~~----------~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L 196 (530)
T COG0488 127 DGWTLEARAEEALLGLGFPDE----------DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYL 196 (530)
T ss_pred cccchHHHHHHHHhcCCCCcc----------cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHH
Confidence 112233456666665554432 2345679999999999999999999999999999999999999999999
Q ss_pred Hh-cCCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCe
Q 040758 735 EA-AGITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNW 772 (788)
Q Consensus 735 ~~-~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~ 772 (788)
.+ .| |+|+||||..++ +.|++|+.++.|+...-.|||
T Consensus 197 ~~~~g-tviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny 235 (530)
T COG0488 197 KRYPG-TVIVVSHDRYFLDNVATHILELDRGKLTPYKGNY 235 (530)
T ss_pred HhCCC-cEEEEeCCHHHHHHHhhheEEecCCceeEecCCH
Confidence 87 56 999999999877 579999999999775555554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=332.52 Aligned_cols=201 Identities=22% Similarity=0.303 Sum_probs=158.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ . +
T Consensus 318 ~~l~~~~l~~~~~--~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~-~---~---------- 381 (635)
T PRK11147 318 IVFEMENVNYQID--GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCG-T---K---------- 381 (635)
T ss_pred ceEEEeeeEEEEC--CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEC-C---C----------
Confidence 3699999999996 4579999999999999999999999999999999999999999999872 1 0
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
-.|||++|++ .++. .|+.||+.++......
T Consensus 382 --------------------~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~---------------------------- 413 (635)
T PRK11147 382 --------------------LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMV---------------------------- 413 (635)
T ss_pred --------------------cEEEEEeCcccccCCCCCHHHHHHhhcccccc----------------------------
Confidence 1399999986 3554 5999999764211000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....++.+.+..+++.. +........||||||||++|||||+.+|++|||||||++||+.+...+.+.|
T Consensus 414 --~~~~~~~~~~l~~~~l~~--------~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l 483 (635)
T PRK11147 414 --NGRPRHVLGYLQDFLFHP--------KRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELL 483 (635)
T ss_pred --cchHHHHHHHHHhcCCCH--------HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 001234555666555421 0112345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchh-hcCCEEEEEc-cCCCCCCCCC
Q 040758 735 EAAGITYISVGHRRTLY-DFHKRVLRIS-TVDQNSSQSN 771 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~-~~~D~Ilvl~-~g~~~~~~~~ 771 (788)
++.+.|+|+|||+.+.+ ..||+|++|+ +|+...-.|+
T Consensus 484 ~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~ 522 (635)
T PRK11147 484 DSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGG 522 (635)
T ss_pred HhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCC
Confidence 88677999999998765 6799999997 7865433333
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=332.08 Aligned_cols=220 Identities=18% Similarity=0.195 Sum_probs=158.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++|+++|||||||||||||+|+|+|+++|++|+|.+++.
T Consensus 1 ~i~i~nls~~~g--~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--------------- 63 (638)
T PRK10636 1 MIVFSSLQIRRG--VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--------------- 63 (638)
T ss_pred CEEEEEEEEEeC--CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 388999999995 467999999999999999999999999999999999999999999998421
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH---HHHhcCCccchhhhhhhhhhccC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD---AAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~---aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..++|++|++..+..|+.+.+.-+... ...... ..........+..... .....
T Consensus 64 -------------------~~i~~~~q~~~~~~~~~~~~v~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 120 (638)
T PRK10636 64 -------------------WQLAWVNQETPALPQPALEYVIDGDRE--YRQLEAQLHDANERNDGHAIATIHG--KLDAI 120 (638)
T ss_pred -------------------CEEEEEecCCCCCCCCHHHHHHHhhHH--HHHHHHHHHHHhccCCHHHHHHHHH--HHHhc
Confidence 128899997655555666655321100 000000 0000000000000000 00000
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......++.++|+.+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 121 ~~~~~~~~~~~~L~~lgl~~~~~---------~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~ 191 (638)
T PRK10636 121 DAWTIRSRAASLLHGLGFSNEQL---------ERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKW 191 (638)
T ss_pred CCcchHHHHHHHHHhCCCCchhh---------cCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHH
Confidence 1112234677778877764 121 234567999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
|.+.+.|+|+|||++..+ ..||+|++|++|+..
T Consensus 192 L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~ 225 (638)
T PRK10636 192 LKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLF 225 (638)
T ss_pred HHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEE
Confidence 988788999999998765 579999999998763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=327.42 Aligned_cols=207 Identities=23% Similarity=0.323 Sum_probs=156.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++|+++ .+|+|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+.....
T Consensus 267 ~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~-------- 331 (510)
T PRK15439 267 PVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALS-------- 331 (510)
T ss_pred ceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCC--------
Confidence 3699999983 1599999999999999999999999999999999999999999999643321110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc---ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.....+.+|+|+||++ .+|. .|+.+|+....... . .+ .
T Consensus 332 --------------~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~-~-------------~~----------~ 373 (510)
T PRK15439 332 --------------TAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNR-R-------------GF----------W 373 (510)
T ss_pred --------------HHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhh-h-------------cc----------c
Confidence 0011245699999985 3564 49999985321000 0 00 0
Q ss_pred cCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.+.++.+++. ... ......||||||||++|||||+.+|++|||||||++||+.+.+.+.
T Consensus 374 -~~~~~~~~~~~~~l~~~~l~~~~~---------~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~ 443 (510)
T PRK15439 374 -IKPARENAVLERYRRALNIKFNHA---------EQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIY 443 (510)
T ss_pred -cChHHHHHHHHHHHHHcCCCCCCc---------cCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHH
Confidence 00000123456777777664 222 3346779999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
+.|++ .|.|+|+|||+++.+ ++||++++|++|+..
T Consensus 444 ~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~ 482 (510)
T PRK15439 444 QLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEIS 482 (510)
T ss_pred HHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 98864 589999999998765 689999999998653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=333.96 Aligned_cols=197 Identities=25% Similarity=0.349 Sum_probs=156.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||. ++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~---~~~-------------------- 93 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM---PID-------------------- 93 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE---ECC--------------------
Confidence 567999999999999999999999999999999999999885 799999643 221
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHH
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 667 (788)
....++.+|||+|++.++. .||+||+.|+........ + ......+.+.+.+
T Consensus 94 ---~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~-------------~------------~~~~~~~~v~~~l 145 (617)
T TIGR00955 94 ---AKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRR-------------V------------TKKEKRERVDEVL 145 (617)
T ss_pred ---HHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCC-------------C------------CHHHHHHHHHHHH
Confidence 0124567999999999995 599999987532110000 0 0001123567778
Q ss_pred HhcccccccccCCCcccc-cc--CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEE
Q 040758 668 EDVKLGYILPRLNSLDTT-YE--WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITY 741 (788)
Q Consensus 668 ~~~~l~~~~~~~~g~~t~-~e--~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~Tv 741 (788)
+.+++.+. .|+. ++ .+..||||||||++|||+|+.+|++|+||||||+||+.+...+.+.|++ .|+|+
T Consensus 146 ~~lgL~~~------~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tv 219 (617)
T TIGR00955 146 QALGLRKC------ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219 (617)
T ss_pred HHcCchhc------CcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEE
Confidence 88777643 3454 44 2467999999999999999999999999999999999999999998875 59999
Q ss_pred EEEecCcc--hhhcCCEEEEEccCCC
Q 040758 742 ISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 742 I~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
|+++|+++ +.+.+|++++|++|+.
T Consensus 220 i~~~hq~~~~i~~~~D~i~ll~~G~~ 245 (617)
T TIGR00955 220 ICTIHQPSSELFELFDKIILMAEGRV 245 (617)
T ss_pred EEEeCCCCHHHHHHhceEEEeeCCeE
Confidence 99999975 5689999999999864
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=280.02 Aligned_cols=142 Identities=25% Similarity=0.282 Sum_probs=124.5
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcc
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS 581 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~ 581 (788)
.||+++|+ ++++++| +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 4 ~~l~~~~~--~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------------- 60 (177)
T cd03222 4 PDCVKRYG--VFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG-------------------- 60 (177)
T ss_pred CCeEEEEC--CEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC--------------------
Confidence 57889995 4578888 499999999999999999999999999999999999999842
Q ss_pred cccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH
Q 040758 582 QNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 582 ~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
..++|++|++.
T Consensus 61 ---------------~~i~~~~q~~~------------------------------------------------------ 71 (177)
T cd03222 61 ---------------ITPVYKPQYID------------------------------------------------------ 71 (177)
T ss_pred ---------------EEEEEEcccCC------------------------------------------------------
Confidence 12788877530
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---A- 737 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~- 737 (788)
||||||||++|||||+.+|++++|||||++||+.+...+.+.+.+ .
T Consensus 72 ------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~ 121 (177)
T cd03222 72 ------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEG 121 (177)
T ss_pred ------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999888864 3
Q ss_pred CCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 738 GITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 738 g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
++|+|++||+++.+. .||++++|+++..
T Consensus 122 ~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 122 KKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 489999999987664 7999999997643
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=330.56 Aligned_cols=194 Identities=20% Similarity=0.254 Sum_probs=153.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|++ ++++|+|+||+|++|++++|+||||||||||+|+|+|+.+|++|+|.+++
T Consensus 507 ~~L~~~~ls~~y~~-~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~--------------- 570 (718)
T PLN03073 507 PIISFSDASFGYPG-GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA--------------- 570 (718)
T ss_pred ceEEEEeeEEEeCC-CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC---------------
Confidence 46999999999963 44699999999999999999999999999999999999999999998721
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+..|||++|++. ...++.+|.... ..+ ...
T Consensus 571 -------------------~~~igyv~Q~~~-~~l~~~~~~~~~-----------~~~-------------------~~~ 600 (718)
T PLN03073 571 -------------------KVRMAVFSQHHV-DGLDLSSNPLLY-----------MMR-------------------CFP 600 (718)
T ss_pred -------------------ceeEEEEecccc-ccCCcchhHHHH-----------HHH-------------------hcC
Confidence 134999999862 222344432110 000 000
Q ss_pred CCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.+.|+.+++.. .. ...+..||||||||++|||||+.+|++|||||||++||+.+...+.+.|.
T Consensus 601 ~~~~~~i~~~L~~~gl~~~~~---------~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~ 671 (718)
T PLN03073 601 GVPEQKLRAHLGSFGVTGNLA---------LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLV 671 (718)
T ss_pred CCCHHHHHHHHHHCCCChHHh---------cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 112356677788777642 11 23467799999999999999999999999999999999999999999998
Q ss_pred hcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 AAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|+|+|||++..+ ..||++++|++|+.
T Consensus 672 ~~~gtvIivSHd~~~i~~~~drv~~l~~G~i 702 (718)
T PLN03073 672 LFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702 (718)
T ss_pred HcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 7555999999998766 57999999999865
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=329.06 Aligned_cols=191 Identities=21% Similarity=0.270 Sum_probs=153.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++
T Consensus 311 ~~l~~~~l~~~y~--~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~--------------- 373 (638)
T PRK10636 311 PLLKMEKVSAGYG--DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK--------------- 373 (638)
T ss_pred ceEEEEeeEEEeC--CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC---------------
Confidence 3699999999996 46799999999999999999999999999999999999999999999730
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc--ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...+||++|++ .+.. .|+.+++....
T Consensus 374 -------------------~~~igy~~Q~~~~~l~~~~~~~~~~~~~~-------------------------------- 402 (638)
T PRK10636 374 -------------------GIKLGYFAQHQLEFLRADESPLQHLARLA-------------------------------- 402 (638)
T ss_pred -------------------CEEEEEecCcchhhCCccchHHHHHHHhC--------------------------------
Confidence 02499999985 2332 35555542100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......++.+.|+.+++... ........|||||||||+|||+|+.+|++|||||||++||+.+...+.+.
T Consensus 403 --~~~~~~~~~~~L~~~~l~~~--------~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~ 472 (638)
T PRK10636 403 --PQELEQKLRDYLGGFGFQGD--------KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEA 472 (638)
T ss_pred --chhhHHHHHHHHHHcCCChh--------HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 00112445667777655310 11234567999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|.+.+.|+|+|||++..+ +.||+|++|++|+.
T Consensus 473 L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i 505 (638)
T PRK10636 473 LIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505 (638)
T ss_pred HHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 988666999999998765 57999999999975
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=325.07 Aligned_cols=185 Identities=24% Similarity=0.237 Sum_probs=152.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++
T Consensus 339 ~~l~~~~ls~~~~~---~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---------------- 399 (590)
T PRK13409 339 TLVEYPDLTKKLGD---FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---------------- 399 (590)
T ss_pred eEEEEcceEEEECC---EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----------------
Confidence 36999999999953 35999999999999999999999999999999999999999999862
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
..++|+||++.++ +.|++||+.++....
T Consensus 400 --------------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~------------------------------- 428 (590)
T PRK13409 400 --------------------LKISYKPQYIKPDYDGTVEDLLRSITDDL------------------------------- 428 (590)
T ss_pred --------------------eeEEEecccccCCCCCcHHHHHHHHhhhc-------------------------------
Confidence 1389999998765 569999997641100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.......++++.+++.... .....+||||||||++|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 429 --~~~~~~~~~L~~l~l~~~~---------~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 429 --GSSYYKSEIIKPLQLERLL---------DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred --ChHHHHHHHHHHCCCHHHH---------hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 0112345667776664322 23467799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||++++|++
T Consensus 498 ~l~~~~g~tviivsHD~~~~~~~aDrvivl~~ 529 (590)
T PRK13409 498 RIAEEREATALVVDHDIYMIDYISDRLMVFEG 529 (590)
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4 389999999998765 57999999975
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=352.43 Aligned_cols=208 Identities=19% Similarity=0.293 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcCC--CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTPT--SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS---DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~~--~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~---p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.++++||++.|+. +++.+|+|+|+++++||++||+||||||||||+++|+|+.+ |++|+|.+||.+ +.
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~---~~---- 831 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRP---LD---- 831 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEE---CC----
Confidence 5899999999852 34579999999999999999999999999999999999998 788999996432 21
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
...|+.+|||+|++.++ ..|++||+.++..... +.
T Consensus 832 --------------------~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~--------------~~---------- 867 (1394)
T TIGR00956 832 --------------------SSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQ--------------PK---------- 867 (1394)
T ss_pred --------------------hhhhcceeeecccccCCCCCCHHHHHHHHHHhCC--------------CC----------
Confidence 12456799999987654 5799999987421000 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCC-EEEEecCCCCCCHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQ-IVLLDESTSALDEANEAH 729 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~-iLiLDEpTSaLD~~se~~ 729 (788)
........+.+.++++.+++.... |+. ++.+..||||||||++|||||+.+|+ +|+||||||+||+.+...
T Consensus 868 -~~~~~~~~~~v~~~l~~l~L~~~~------d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~ 940 (1394)
T TIGR00956 868 -SVSKSEKMEYVEEVIKLLEMESYA------DAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWS 940 (1394)
T ss_pred -CCCHHHHHHHHHHHHHHcCChhhC------CCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHH
Confidence 000000123466788888776443 333 55566899999999999999999997 999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcch--hhcCCEEEEEccC
Q 040758 730 LYEQIEA---AGITYISVGHRRTL--YDFHKRVLRISTV 763 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~--~~~~D~Ilvl~~g 763 (788)
+.+.|++ .|+|+|+++|+++. .+.+|++++|++|
T Consensus 941 i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G 979 (1394)
T TIGR00956 941 ICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979 (1394)
T ss_pred HHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence 9998865 58999999999875 3679999999987
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=307.43 Aligned_cols=173 Identities=28% Similarity=0.383 Sum_probs=135.6
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCC
Q 040758 531 VMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610 (788)
Q Consensus 531 IvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~ 610 (788)
|+||||||||||+++|+|+++|++|+|.++|.+..+. ...+++++|++|++.+|.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~-------------------------~~~~~~i~~v~q~~~l~~ 55 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNV-------------------------PPHLRHINMVFQSYALFP 55 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCC-------------------------CHHHCCEEEEecCccccC
Confidence 6899999999999999999999999999965432111 012456999999999996
Q ss_pred C-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCC
Q 040758 611 G-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS 689 (788)
Q Consensus 611 ~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g 689 (788)
. |++||+.|+...... ......+++.++++.+++....+ ...
T Consensus 56 ~~tv~enl~~~~~~~~~----------------------------~~~~~~~~~~~~l~~~~l~~~~~---------~~~ 98 (325)
T TIGR01187 56 HMTVEENVAFGLKMRKV----------------------------PRAEIKPRVLEALRLVQLEEFAD---------RKP 98 (325)
T ss_pred CCcHHHHHHHHHhhcCC----------------------------CHHHHHHHHHHHHHHcCCcchhc---------CCh
Confidence 5 999999875210000 00001234667777777654332 345
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcch-hhcCCEEEEEccCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRTL-YDFHKRVLRISTVD 764 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~ 764 (788)
.+||||||||++|||||+++|++|||||||++||+.+...+.+.|++ .|+|+|+|||+++. ...||+|++|++|+
T Consensus 99 ~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~ 178 (325)
T TIGR01187 99 HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGK 178 (325)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 67999999999999999999999999999999999999999988864 38999999999865 56899999999996
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 179 i 179 (325)
T TIGR01187 179 I 179 (325)
T ss_pred E
Confidence 4
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=281.29 Aligned_cols=214 Identities=20% Similarity=0.312 Sum_probs=161.4
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|. ++++|+|+|++|++||+++|+||||||||||+++++|.++|++|.+.+.|+.-...
T Consensus 29 ~~li~l~~v~v~r~--gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~-------- 98 (257)
T COG1119 29 EPLIELKNVSVRRN--GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKG-------- 98 (257)
T ss_pred cceEEecceEEEEC--CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCC--------
Confidence 34699999999995 67899999999999999999999999999999999999999999999864421111
Q ss_pred hhhhcccccccchhcccccCcceEEEEcccc---ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
... .++|++||+|+-+- +.-+.+++|-+.-|-.. .+ ++.
T Consensus 99 -------------~~~-~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~-----------------si-------G~y 140 (257)
T COG1119 99 -------------ETI-FELRKRIGLVSSELHERFRVRETVRDVVLSGFFA-----------------SI-------GIY 140 (257)
T ss_pred -------------cch-HHHHHHhCccCHHHHhhcccccccceeeeecccc-----------------cc-------ccc
Confidence 111 35678899997532 22334555555432111 00 011
Q ss_pred c-CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 653 R-KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 653 ~-~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
. .......+++...++.+++....++ .-..||-|||||+-|||||+++|++|||||||++||....+.+.
T Consensus 141 ~~~~~~~~~~~a~~lle~~g~~~la~r---------~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll 211 (257)
T COG1119 141 QEDLTAEDLAAAQWLLELLGAKHLADR---------PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLL 211 (257)
T ss_pred ccCCCHHHHHHHHHHHHHcchhhhccC---------chhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHH
Confidence 0 1111223456677888777665544 34579999999999999999999999999999999999999988
Q ss_pred HHHHh-----cCCEEEEEecCcc-hhhcCCEEEEEccCCCC
Q 040758 732 EQIEA-----AGITYISVGHRRT-LYDFHKRVLRISTVDQN 766 (788)
Q Consensus 732 ~~L~~-----~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~ 766 (788)
+.|.+ .+.|+|+|||..+ +....++++.+++|+..
T Consensus 212 ~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 212 NRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred HHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCcee
Confidence 88864 3788999999975 55778999999998754
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=292.85 Aligned_cols=215 Identities=25% Similarity=0.352 Sum_probs=163.8
Q ss_pred cEEEeeeEEEcC--CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTP--TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-----GRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~--~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-----~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|. ++...++++|||+|++||++||||+||||||-..+.++|+++. -+|+|.++|.|.-...
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s-- 83 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS-- 83 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC--
Confidence 589999988774 3345799999999999999999999999999999999999875 3699999655433221
Q ss_pred CCccchhhhcccccccchhcccccCc-ceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
+..++..| ..|+++||||.--- -||..+|. +..+ .|.
T Consensus 84 ------------------e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~------------E~l~---~Hr------ 124 (534)
T COG4172 84 ------------------ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLA------------EVLR---LHR------ 124 (534)
T ss_pred ------------------HHHHhhhcccceEEEecccccccCcHhHHHHHHH------------HHHH---HHh------
Confidence 12233344 45999999995321 14433332 1100 000
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
+ ....+..+++.+.|+.+|+.+-..++ ..++.+|||||||||.||.||+.+|++||.||||.|||...
T Consensus 125 ---g---~~~~~Ar~r~lelL~~VgI~~p~~rl------~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtv 192 (534)
T COG4172 125 ---G---LSRAAARARALELLELVGIPEPEKRL------DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTV 192 (534)
T ss_pred ---c---ccHHHHHHHHHHHHHHcCCCchhhhh------hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhh
Confidence 0 01122346788889999887544433 34577899999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++|.+.|++ .|..+++|||+++++ ++||||+||.+|+.
T Consensus 193 QaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~i 236 (534)
T COG4172 193 QAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEI 236 (534)
T ss_pred HHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEE
Confidence 9999998864 599999999999987 57999999999975
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=284.23 Aligned_cols=174 Identities=18% Similarity=0.194 Sum_probs=132.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-EeeccCcccccCCCccchhhhcccccccchhcccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT-FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN 593 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (788)
+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++ ..+
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~---~~~-------------------------- 52 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRG---DAL-------------------------- 52 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecC---cee--------------------------
Confidence 78999999999999999999999999999999999999999997 521 110
Q ss_pred cCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHH-HHhcc
Q 040758 594 RNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVK 671 (788)
Q Consensus 594 ~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~ 671 (788)
.+.|++.+|+. |++||+.+....... ...++.+. .+..+
T Consensus 53 -------~~~~~~~l~~~ltv~enl~~~~~~~~~--------------------------------~~~~~~~~~~~~~~ 93 (213)
T PRK15177 53 -------PLGANSFILPGLTGEENARMMASLYGL--------------------------------DGDEFSHFCYQLTQ 93 (213)
T ss_pred -------ccccccccCCcCcHHHHHHHHHHHcCC--------------------------------CHHHHHHHHHHHhC
Confidence 12356667764 999999763110000 01111111 12222
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
++.. .......||||||||++|||||+++|+++||||||+++|+.+...+.+.+.+ +++|+|++||+++
T Consensus 94 l~~~---------~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~ 164 (213)
T PRK15177 94 LEQC---------YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPR 164 (213)
T ss_pred hhHH---------hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHH
Confidence 2211 1233456999999999999999999999999999999999999999987743 5789999999987
Q ss_pred hh-hcCCEEEEEccCCC
Q 040758 750 LY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 750 ~~-~~~D~Ilvl~~g~~ 765 (788)
.+ ++||++++|++|+.
T Consensus 165 ~~~~~~d~i~~l~~G~i 181 (213)
T PRK15177 165 LIKEHCHAFGVLLHGKI 181 (213)
T ss_pred HHHHhcCeeEEEECCeE
Confidence 66 58999999999864
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=268.02 Aligned_cols=152 Identities=38% Similarity=0.552 Sum_probs=127.1
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
++|++|+|++ +++++++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~------------- 66 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKL------------- 66 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccC-------------
Confidence 6899999963 4799999999999999999999999999999999999999999999954321110
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
.....++.++|++|
T Consensus 67 ----------~~~~~~~~i~~~~q-------------------------------------------------------- 80 (157)
T cd00267 67 ----------PLEELRRRIGYVPQ-------------------------------------------------------- 80 (157)
T ss_pred ----------CHHHHHhceEEEee--------------------------------------------------------
Confidence 00012233555443
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---A 737 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~ 737 (788)
|||||+||++||||++.+|++++|||||++||.++...+.+.+.+ .
T Consensus 81 -------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~ 129 (157)
T cd00267 81 -------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129 (157)
T ss_pred -------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC
Confidence 799999999999999999999999999999999999999988864 4
Q ss_pred CCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 738 GITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 738 g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
++|+|++||+++.+. .||++++|++|+
T Consensus 130 ~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 130 GRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 689999999987765 579999999864
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=323.29 Aligned_cols=222 Identities=22% Similarity=0.243 Sum_probs=155.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++|+++||+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 3 ~l~i~~ls~~~~--~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~--------------- 65 (635)
T PRK11147 3 LISIHGAWLSFS--DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD--------------- 65 (635)
T ss_pred EEEEeeEEEEeC--CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC---------------
Confidence 589999999996 457999999999999999999999999999999999999999999998420
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCcc-ccchhhHHHH-hcCC---ccchhhhhhh-hh
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTE-EVKPASDAAK-SAGL---VPFLTSAQKL-EN 650 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~-~~~~~~~aa~-~~~~---~~~i~~~~~~-~~ 650 (788)
..+++++|++... .+++.+++..+.... .......... .... ...+.....+ ..
T Consensus 66 -------------------~~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 126 (635)
T PRK11147 66 -------------------LIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQ 126 (635)
T ss_pred -------------------CEEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHH
Confidence 1267778765432 356666653221000 0000000000 0000 0000000000 00
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
...........++.++++.+++.. .....+|||||||||+|||||+.+|++|||||||++||+.+...+
T Consensus 127 ~~~~~~~~~~~~~~~~l~~lgl~~-----------~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L 195 (635)
T PRK11147 127 LDHHNLWQLENRINEVLAQLGLDP-----------DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWL 195 (635)
T ss_pred HHhcCcccHHHHHHHHHHhCCCCC-----------CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHH
Confidence 000111122345677787776531 223567999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 731 YEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
.+.|.+.+.|+|+|||+...+ ..||+|++|++|+..
T Consensus 196 ~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 196 EGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred HHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 999988667999999998766 579999999998754
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-32 Score=253.19 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=158.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~ 573 (788)
+++.++||+.+.| ++.+|.++||+|.+||++-|+||||||||||+.-+.|...++ +|++++|+++ ++
T Consensus 1 ~~l~l~nvsl~l~--g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~---l~----- 70 (213)
T COG4136 1 GMLCLKNVSLRLP--GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR---LD----- 70 (213)
T ss_pred CceeeeeeeecCC--CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee---cc-----
Confidence 3588999999886 567899999999999999999999999999999999999876 7999995433 21
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.+...++++|+++||+.||+ -+|-+|+.|.-+. ++ ++
T Consensus 71 -----------------~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~-~~----------------KG-------- 108 (213)
T COG4136 71 -----------------MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA-TL----------------KG-------- 108 (213)
T ss_pred -----------------ccchhhhheeeeecccccccccccccceEEecCc-cc----------------cc--------
Confidence 12244678999999999996 5999999985432 11 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH--
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL-- 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i-- 730 (788)
.+.......+|++.+++... +..+.+||||||-|||+-|+|+..|+.++||||+|.||..-....
T Consensus 109 ----~aRr~~a~aAL~~~gL~g~f---------~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~ 175 (213)
T COG4136 109 ----NARRNAANAALERSGLDGAF---------HQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175 (213)
T ss_pred ----HHHHhhHHHHHHHhccchhh---------hcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHH
Confidence 01223456678877665432 334678999999999999999999999999999999999877654
Q ss_pred --HHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 731 --YEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 731 --~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+..++..|..+|.+||+..-+....|++.|-
T Consensus 176 wVFs~~r~agiPtv~VTHD~~DvpagsrVie~~ 208 (213)
T COG4136 176 WVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEMA 208 (213)
T ss_pred HHHHHHHhcCCCeEEEecccccCCCCCeeeeee
Confidence 4455668999999999987776667887764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=265.77 Aligned_cols=155 Identities=28% Similarity=0.327 Sum_probs=123.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++|+|+||+|++|++++|+||||||||||+|++. +++|++.+++.. -
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~---~------------------------ 55 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL---P------------------------ 55 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc---c------------------------
Confidence 457899999999999999999999999999999986 369999884210 0
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
...++.++|++| .+ .++.++
T Consensus 56 -~~~~~~~~~~~q---------~~--------------------------------------------------~l~~~~ 75 (176)
T cd03238 56 -KFSRNKLIFIDQ---------LQ--------------------------------------------------FLIDVG 75 (176)
T ss_pred -ccccccEEEEhH---------HH--------------------------------------------------HHHHcC
Confidence 011234778777 01 122222
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK--PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+.+ .+...+..+||||||||++|||||+++ |+++||||||++||+++.+.+.+.|++ .|+|+|+|||
T Consensus 76 L~~--------~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH 147 (176)
T cd03238 76 LGY--------LTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147 (176)
T ss_pred CCc--------cccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 211 012344677999999999999999999 999999999999999999999988865 5999999999
Q ss_pred CcchhhcCCEEEEEccCCC
Q 040758 747 RRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 747 r~~~~~~~D~Ilvl~~g~~ 765 (788)
+++.+..||++++|++|..
T Consensus 148 ~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 148 NLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred CHHHHHhCCEEEEECCCCC
Confidence 9988889999999998743
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-31 Score=337.56 Aligned_cols=211 Identities=21% Similarity=0.271 Sum_probs=161.3
Q ss_pred cEEEeeeEEEcCC-----------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccC
Q 040758 498 LLDIEDLTLKTPT-----------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDR 564 (788)
Q Consensus 498 ~I~~~nvsf~y~~-----------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~ 564 (788)
.+.++||++..+. +++.+|+|+|++++||+++||+||||||||||+++|+|..++ .+|+|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~- 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFP- 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCcc-
Confidence 6999999998742 134699999999999999999999999999999999999874 68999995432
Q ss_pred cccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 565 EETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 565 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
.. ....++.+|||+|++.++. .|++||+.|+.... .....
T Consensus 946 --~~-----------------------~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr-------------~~~~~- 986 (1470)
T PLN03140 946 --KK-----------------------QETFARISGYCEQNDIHSPQVTVRESLIYSAFLR-------------LPKEV- 986 (1470)
T ss_pred --CC-----------------------hHHhhhheEEEccccccCCCCcHHHHHHHHHHhC-------------CCCCC-
Confidence 21 0123456999999988775 59999998742100 00000
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccccc-CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE-WSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e-~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL 722 (788)
......+.+.+.++.+++....+.. .+. ....||||||||++|||+|+.+|++|+||||||+|
T Consensus 987 -----------~~~~~~~~v~~vl~~lgL~~~~~~~-----vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 987 -----------SKEEKMMFVDEVMELVELDNLKDAI-----VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred -----------CHHHHHHHHHHHHHHCCChhHhCCc-----cCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 0000123466778888776543321 122 23579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEcc-CC
Q 040758 723 DEANEAHLYEQIEA---AGITYISVGHRRT--LYDFHKRVLRIST-VD 764 (788)
Q Consensus 723 D~~se~~i~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~-g~ 764 (788)
|+.+...+.+.|++ .|+|+|+++|+++ ..+.+|++++|++ |+
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~ 1098 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1098 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCE
Confidence 99999999998865 5999999999987 3578999999997 54
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-32 Score=316.88 Aligned_cols=192 Identities=22% Similarity=0.237 Sum_probs=146.7
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE-----------EeeccCcccccCC
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT-----------FYVKDREETDAHT 571 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~-----------~~~~~~~~i~~~~ 571 (788)
+++++|+. +..+|++++ ++++||++||+||||||||||+|+|+|+++|++|+|. ++|.+..+.
T Consensus 78 ~~~~~yg~-~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~---- 151 (590)
T PRK13409 78 EPVHRYGV-NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNY---- 151 (590)
T ss_pred CceEEecC-CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHH----
Confidence 37888963 346899999 9999999999999999999999999999999999997 532221110
Q ss_pred CccchhhhcccccccchhcccccCcce----EEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRG----VFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~----i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
.. .....+.. +.+++|.|.+|.+|++||+.+..
T Consensus 152 ----------------~~-~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~-------------------------- 188 (590)
T PRK13409 152 ----------------FK-KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD-------------------------- 188 (590)
T ss_pred ----------------HH-HHhccCcceeecccchhhhhhhhcchHHHHHHhhh--------------------------
Confidence 00 00011122 44555666777789999885310
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
..+++.++++.+++.... .....+||||||||++|||||+++|++||||||||+||+.+.
T Consensus 189 -----------~~~~~~~~l~~l~l~~~~---------~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~ 248 (590)
T PRK13409 189 -----------ERGKLDEVVERLGLENIL---------DRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248 (590)
T ss_pred -----------HHHHHHHHHHHcCCchhh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 113456677777665332 234567999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc--CCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 728 AHLYEQIEAA--GITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 728 ~~i~~~L~~~--g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
..+.+.|++. |+|+|+|+|+++.+ ..||++++|.++
T Consensus 249 ~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 249 LNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 9999888653 99999999998765 579999999763
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-31 Score=317.74 Aligned_cols=237 Identities=18% Similarity=0.182 Sum_probs=158.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEEeeccC--cccccCC
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW---SDGRGKITFYVKDR--EETDAHT 571 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~---~p~~G~I~~~~~~~--~~i~~~~ 571 (788)
..|+++|++|+|+ ++++|+|+||+|++|+++|||||||||||||+++|+|.. .|.+|+|.+...+. .+.+
T Consensus 176 ~~I~i~nls~~y~--~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t--- 250 (718)
T PLN03073 176 KDIHMENFSISVG--GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT--- 250 (718)
T ss_pred eeEEEceEEEEeC--CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC---
Confidence 4699999999996 456999999999999999999999999999999999864 58899998742211 0000
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCcc-ccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTE-EVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~-~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
+ .+ .+..........+++.+++++|++.+...+..+|...+.... +.+++.+.. .. -++.
T Consensus 251 --~----~~--~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~--~~---------~~~~ 311 (718)
T PLN03073 251 --A----LQ--CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL--EE---------IYKR 311 (718)
T ss_pred --H----HH--HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHH--HH---------HHHH
Confidence 0 00 000000000011234478888887654334444432221100 000000000 00 0111
Q ss_pred hccCCCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~ 729 (788)
++........+++.++|..+++. ... .....+||||||||++|||||+.+|++|||||||++||+.+...
T Consensus 312 ~~~~~~~~~~~r~~~~L~~lgl~~~~~---------~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~ 382 (718)
T PLN03073 312 LELIDAYTAEARAASILAGLSFTPEMQ---------VKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLW 382 (718)
T ss_pred HHhcCcchHHHHHHHHHHHCCCChHHH---------hCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHH
Confidence 11111222345677777777664 111 22356799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCCC
Q 040758 730 LYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQN 766 (788)
Q Consensus 730 i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~ 766 (788)
+.+.|++.+.|+|+|||+++.+ ..||+|++|++|+..
T Consensus 383 l~~~L~~~~~tviivsHd~~~l~~~~d~i~~l~~g~i~ 420 (718)
T PLN03073 383 LETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLV 420 (718)
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 9999998899999999998776 569999999998753
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-30 Score=259.99 Aligned_cols=213 Identities=27% Similarity=0.359 Sum_probs=166.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+++++|++.+-.+ ++++|+++||+|++||+.+|.||||||||||.+.|+|. |.+++|+|.++|.|..++.
T Consensus 3 ~L~I~dLhv~v~~-~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~------- 74 (251)
T COG0396 3 MLEIKDLHVEVEG-KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELS------- 74 (251)
T ss_pred eeEEeeeEEEecC-chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCC-------
Confidence 5899999999853 25899999999999999999999999999999999997 6899999999776665552
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+.++.|..|.+.+|.|.=++| |+.+-++.... +.+...- +
T Consensus 75 ---------------~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n---------~~~~~~~---~------------ 115 (251)
T COG0396 75 ---------------PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMN---------ARRGARG---I------------ 115 (251)
T ss_pred ---------------HhHHHhcCCEEeecCCccCCCeeHHHHHHHHHH---------hhhcccc---c------------
Confidence 223567889999999998887 77766643211 0000000 0
Q ss_pred CCCCChHHHHHHHHhccccc-ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
......++.++++.++++. +++|. + ...+|||||.|..|+.+++-+|++.|||||-|+||.++-+.|-+.
T Consensus 116 -~~~~~~~~~e~~~~l~~~~~~l~R~-----v---N~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~ 186 (251)
T COG0396 116 -LPEFIKELKEKAELLGLDEEFLERY-----V---NEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEG 186 (251)
T ss_pred -cHHHHHHHHHHHHHcCCCHHHhhcc-----c---CCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHH
Confidence 0012345677788887764 33331 1 123999999999999999999999999999999999999988776
Q ss_pred HH---hcCCEEEEEecCcchhhcC--CEEEEEccCCCC
Q 040758 734 IE---AAGITYISVGHRRTLYDFH--KRVLRISTVDQN 766 (788)
Q Consensus 734 L~---~~g~TvI~IaHr~~~~~~~--D~Ilvl~~g~~~ 766 (788)
++ +.|.++++|||...++.+. |++.+|-+|+..
T Consensus 187 i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv 224 (251)
T COG0396 187 INALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIV 224 (251)
T ss_pred HHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEE
Confidence 54 5799999999998888775 999999999763
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=249.04 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=163.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++++|+.|. +..-.+|+||++.|||.++|||+||||||||+++|++-..|+.|+|.+...++....+.
T Consensus 6 LL~V~~lsk~Yg--~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~------- 76 (258)
T COG4107 6 LLSVSGLSKLYG--PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLY------- 76 (258)
T ss_pred ceeehhhhhhhC--CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHh-------
Confidence 689999999996 34578999999999999999999999999999999999999999999976655443210
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.+ .+ .....-.|...|+|.|+| +|-+++.-... ++.-+.++ .++.+...
T Consensus 77 ~m-----sE--aeRR~L~RTeWG~VhQnP-------~DGLRm~VSAG-----------~NiGERlm------a~G~RHYG 125 (258)
T COG4107 77 TM-----SE--AERRRLLRTEWGFVHQNP-------RDGLRMQVSAG-----------GNIGERLM------AIGARHYG 125 (258)
T ss_pred hh-----ch--HHHHHHhhhccceeecCc-------cccceeeeccC-----------CccchhHH------hhhhhhhh
Confidence 00 00 001112356689999999 34444321110 11111111 12222222
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.-.++..+.|+++.++. +..++.+..+|||++||+.|||-|+..|+++++||||-+||...++.+.+.++.
T Consensus 126 ~iR~~a~~WL~~VEI~~--------~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgL 197 (258)
T COG4107 126 NIRAEAQDWLEEVEIDL--------DRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL 197 (258)
T ss_pred hHHHHHHHHHHhcccCc--------ccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHH
Confidence 22355667788776652 234566788999999999999999999999999999999999999999988763
Q ss_pred ---cCCEEEEEecCcchhh-cCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLYD-FHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~ 765 (788)
.|..++++||++..++ .+||..||.+|..
T Consensus 198 v~~l~la~viVTHDl~VarLla~rlmvmk~g~v 230 (258)
T COG4107 198 VRELGLAVVIVTHDLAVARLLADRLMVMKQGQV 230 (258)
T ss_pred HHhcCceEEEEechhHHHHHhhhcceeecCCCE
Confidence 6999999999999886 5899999999864
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-31 Score=261.84 Aligned_cols=201 Identities=26% Similarity=0.355 Sum_probs=151.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+++||+|++|+++-|+|.||||||||++.|+|-..|++|+|.+||.|.....
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~----------------------- 74 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKS----------------------- 74 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCC-----------------------
Confidence 568999999999999999999999999999999999999999999999655433221
Q ss_pred cccCcceEEEEcccccc--C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 592 MNRNSRGVFFLPQRPYM--V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~l--f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
.......++-|+|||-. + +.||.||+....... +.-++..-+ ...-.+.+.+.+.
T Consensus 75 ~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg---------~~rgl~~~l-------------n~~~~~~f~~~l~ 132 (263)
T COG1101 75 VAKRANLLARVFQDPLAGTAPELTIEENLALAESRG---------KKRGLSSAL-------------NERRRSSFRERLA 132 (263)
T ss_pred HHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcC---------cccccchhh-------------hHHHHHHHHHHHh
Confidence 11112348889999954 2 459999997632110 001111100 0111244566666
Q ss_pred hcccccccccCCCccc-cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH----HhcCCEEEE
Q 040758 669 DVKLGYILPRLNSLDT-TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYIS 743 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t-~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L----~~~g~TvI~ 743 (788)
.++++ ++- ...+..-|||||||-++++-|-++.|+||+|||=|+||||.+...|++.- .+.+.|.++
T Consensus 133 ~l~lg--------LenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlM 204 (263)
T COG1101 133 RLGLG--------LENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLM 204 (263)
T ss_pred hcccc--------hhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEE
Confidence 65543 222 24455679999999999999999999999999999999999999988753 446899999
Q ss_pred EecCcc-hhhcCCEEEEEccCCC
Q 040758 744 VGHRRT-LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~~-~~~~~D~Ilvl~~g~~ 765 (788)
|||.++ .++|.+|.++|++|+.
T Consensus 205 VTHnm~~Al~yG~RlImLh~G~I 227 (263)
T COG1101 205 VTHNMEDALDYGNRLIMLHSGKI 227 (263)
T ss_pred EeccHHHHHhhCCeEEEEeCCeE
Confidence 999974 6799999999999985
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=253.60 Aligned_cols=216 Identities=19% Similarity=0.290 Sum_probs=167.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+++|+ +-.+|+|+||++.+||.-+|+|||||||||++..|+|--+|+.|+++++| ..|+.
T Consensus 5 iL~~~~vsVsF~--GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g--~~dl~--------- 71 (249)
T COG4674 5 ILYLDGVSVSFG--GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG--DTDLT--------- 71 (249)
T ss_pred eEEEeceEEEEc--ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcC--chhhc---------
Confidence 589999999996 56799999999999999999999999999999999999999999999964 13332
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ...+..|..||-=||.|..|.. |++||+....... .-+ +..+..+..
T Consensus 72 --------~~--~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~---------------k~v-----~a~L~~r~~ 121 (249)
T COG4674 72 --------KL--PEHRIARAGIGRKFQKPTVFENLTVRENLELALNRD---------------KSV-----FASLFARLR 121 (249)
T ss_pred --------cC--CHHHHHHhccCccccCCeehhhccHHHHHHHHhcCC---------------cch-----HHHhhhhcC
Confidence 00 0112346789999999999975 9999996532110 000 001111222
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.+.|...++.+..++ ....||-||||++.|+..++++|++|+||||++++-.+.....-+.|+.
T Consensus 122 ~~e~~ride~La~igL~~~~~~---------~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~ 192 (249)
T COG4674 122 AEERRRIDELLATIGLGDERDR---------LAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS 192 (249)
T ss_pred hhHHHHHHHHHHHcccchhhhh---------hhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence 3344578888988887654443 3456999999999999999999999999999999976666666666664
Q ss_pred --cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.++++++|-||+.++ .+||+|-||+.|..
T Consensus 193 la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~V 224 (249)
T COG4674 193 LAGKHSILVVEHDMGFVREIADKVTVLHEGSV 224 (249)
T ss_pred HhcCceEEEEeccHHHHHHhhheeEEEeccce
Confidence 578999999999887 57999999999864
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-30 Score=324.74 Aligned_cols=202 Identities=18% Similarity=0.205 Sum_probs=152.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEEeeccCcccccCCCccchhhhcccccccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW----SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE 587 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~----~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 587 (788)
++++|+|+|+++++||+++|+||||||||||+|+|+|.. .|.+|+|.++|.+..+.
T Consensus 73 ~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~-------------------- 132 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEI-------------------- 132 (1394)
T ss_pred cceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHH--------------------
Confidence 456999999999999999999999999999999999986 57999999965432111
Q ss_pred hhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC-hHH-HH
Q 040758 588 LTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS-TDD-LI 664 (788)
Q Consensus 588 ~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~ 664 (788)
. ...|+.++||+|++.++. .|++||+.|+..... +.. . ........ .+. ..
T Consensus 133 ---~-~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~--------------~~~-------~-~~~~~~~~~~~~~~~ 186 (1394)
T TIGR00956 133 ---K-KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKT--------------PQN-------R-PDGVSREEYAKHIAD 186 (1394)
T ss_pred ---H-hhcCceeEEeccccccCCCCCHHHHHHHHHHhCC--------------CCC-------C-CCCCCHHHHHHHHHH
Confidence 1 124567999999988886 599999987421000 000 0 00000000 112 23
Q ss_pred HHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cC
Q 040758 665 KALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AG 738 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g 738 (788)
++++.+++.+.. ++. + +....|||||||||+|||||+.+|++++||||||+||+.+...+.+.|++ .|
T Consensus 187 ~~l~~lgL~~~~------~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g 260 (1394)
T TIGR00956 187 VYMATYGLSHTR------NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILD 260 (1394)
T ss_pred HHHHHcCccccc------CceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence 467777776543 332 2 34567999999999999999999999999999999999999999998864 38
Q ss_pred CEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 739 ITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 739 ~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+++|++ +..+.+|++++|++|+.
T Consensus 261 ~tvii~~Hq~~~~i~~l~D~v~~L~~G~i 289 (1394)
T TIGR00956 261 TTPLVAIYQCSQDAYELFDKVIVLYEGYQ 289 (1394)
T ss_pred CEEEEEecCCCHHHHHhhceEEEEeCCeE
Confidence 9999999996 35678999999999964
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-29 Score=286.95 Aligned_cols=190 Identities=25% Similarity=0.324 Sum_probs=155.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...++++|+++.|++ ++++++++||.|++|+++|||||||+|||||+|+|+|-..|.+|+|.+. ..
T Consensus 319 ~~vl~~~~~~~~y~~-~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g----~~--------- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG-GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG----ET--------- 384 (530)
T ss_pred CeeEEEeccccccCC-CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC----Cc---------
Confidence 347999999999974 4689999999999999999999999999999999999999999999871 11
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccc-cC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
-.+||.+|+.. ++ +.|+.|++.-..+.
T Consensus 385 ---------------------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~------------------------------ 413 (530)
T COG0488 385 ---------------------VKIGYFDQHRDELDPDKTVLEELSEGFPD------------------------------ 413 (530)
T ss_pred ---------------------eEEEEEEehhhhcCccCcHHHHHHhhCcc------------------------------
Confidence 23999999873 23 33666666432111
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....++...|..++... +........||||||-|+++|+.++.+|.+|||||||++||.++...+.++
T Consensus 414 ----~~e~~~r~~L~~f~F~~--------~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a 481 (530)
T COG0488 414 ----GDEQEVRAYLGRFGFTG--------EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA 481 (530)
T ss_pred ----ccHHHHHHHHHHcCCCh--------HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 11345666777665432 112345677999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
|.+-..|+|+||||..++ +.|++|+.+++
T Consensus 482 L~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 482 LLDFEGTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHhCCCeEEEEeCCHHHHHhhcceEEEEcC
Confidence 999889999999999887 46999999996
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-29 Score=319.32 Aligned_cols=221 Identities=20% Similarity=0.264 Sum_probs=154.1
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
++.+|+|+|++|+|||+++|+||||||||||+|+|+|..+|+ +|+|.+||.+..+.
T Consensus 177 ~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~--------------------- 235 (1470)
T PLN03140 177 KLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEF--------------------- 235 (1470)
T ss_pred cceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhh---------------------
Confidence 356999999999999999999999999999999999999998 99999965432111
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCcccc-------chhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEV-------KPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~-------~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
..++.++||+|++.++. .|++||+.|+...... .+.....+..+..+.-. ...+............
T Consensus 236 -----~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~-i~~~~~~~~~~~~~~~ 309 (1470)
T PLN03140 236 -----VPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAE-VDLFMKATAMEGVKSS 309 (1470)
T ss_pred -----cccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchh-hHHHHHHhhhhcchhh
Confidence 12467999999987775 5999999874211000 00000001110000000 0000000000000001
Q ss_pred HHHHHHHHhcccccccccCCCcccc--ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTT--YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~--~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++.+|+++. .+|. ++....|||||||||+|||+|+.+|++|+|||||++||+.+...+.+.|++
T Consensus 310 ~~~~~~L~~lGL~~~------~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la 383 (1470)
T PLN03140 310 LITDYTLKILGLDIC------KDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIV 383 (1470)
T ss_pred HHHHHHHHHcCCccc------cCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHH
Confidence 123456777777543 2332 344567999999999999999999999999999999999999999998864
Q ss_pred --cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 737 --AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 --~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+++|++ ++.+.+|+|++|++|+.
T Consensus 384 ~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~i 416 (1470)
T PLN03140 384 HLTEATVLMSLLQPAPETFDLFDDIILLSEGQI 416 (1470)
T ss_pred HhcCCEEEEEecCCCHHHHHHhheEEEeeCceE
Confidence 489999999985 56788999999999964
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-29 Score=243.40 Aligned_cols=187 Identities=28% Similarity=0.375 Sum_probs=146.4
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
++.+|++...+ ++.++.++||++.+||.+-|+||||||||||+|+|+|+.+|++|+|.++|.++...
T Consensus 3 L~a~~L~~~R~--e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~----------- 69 (209)
T COG4133 3 LEAENLSCERG--ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV----------- 69 (209)
T ss_pred chhhhhhhccC--cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-----------
Confidence 45667766653 56899999999999999999999999999999999999999999999964443222
Q ss_pred hcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.++.++.+-|+...+-+= ..|+.||+.|=.. +. ..
T Consensus 70 -------------~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~----------------------------~~---~~ 105 (209)
T COG4133 70 -------------RESYHQALLYLGHQPGIKTELTALENLHFWQR----------------------------FH---GS 105 (209)
T ss_pred -------------hhhHHHHHHHhhccccccchhhHHHHHHHHHH----------------------------Hh---CC
Confidence 011234566776666555 4599999987210 00 01
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+.+.+.++++.+++....+. ...+||-|||.||||||..+..+|+-||||||++||.+.+..+-..+..
T Consensus 106 ~~~~~i~~Al~~vgL~g~~dl---------p~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H 176 (209)
T COG4133 106 GNAATIWEALAQVGLAGLEDL---------PVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAH 176 (209)
T ss_pred CchhhHHHHHHHcCccccccc---------chhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHH
Confidence 245678899999988765443 3567999999999999999999999999999999999999988877754
Q ss_pred --cCCEEEEEecCcchh
Q 040758 737 --AGITYISVGHRRTLY 751 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~ 751 (788)
.|..||..||..--.
T Consensus 177 ~~~GGiVllttHq~l~~ 193 (209)
T COG4133 177 AAQGGIVLLTTHQPLPI 193 (209)
T ss_pred hcCCCEEEEecCCccCC
Confidence 689999999985433
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=292.29 Aligned_cols=212 Identities=26% Similarity=0.354 Sum_probs=168.1
Q ss_pred CcEEEeeeEEEcCCC---CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC---CCceEEEeeccCcccccC
Q 040758 497 KLLDIEDLTLKTPTS---KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD---GRGKITFYVKDREETDAH 570 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~---~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p---~~G~I~~~~~~~~~i~~~ 570 (788)
-.++++|++...++. .+.+|+|||.+++|||.+||+||||||||||+++|+|..+. .+|+|++||. ..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~---~~--- 97 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGR---PR--- 97 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCc---cC---
Confidence 358999999988654 36799999999999999999999999999999999999975 6899999642 11
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
..+..++..|||+||..++. .||+|++.|...-. +..
T Consensus 98 --------------------~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lr-------------lp~--------- 135 (613)
T KOG0061|consen 98 --------------------DSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLR-------------LPS--------- 135 (613)
T ss_pred --------------------chhhhhheeEEEcccccccccccHHHHHHHHHHhc-------------CCC---------
Confidence 12345778999999999886 49999998732110 000
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccc-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
+...+..++.+.+.++++++....+.. .+ .....+|||||+|++||.-|++||+||+||||||+||+.+..
T Consensus 136 ---~~~~~~k~~~V~~vi~~LgL~~~~~t~-----ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~ 207 (613)
T KOG0061|consen 136 ---SLSKEEKRERVEEVISELGLEKCADTL-----IGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSAL 207 (613)
T ss_pred ---CCCHHHHHHHHHHHHHHcCChhhccce-----ecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHH
Confidence 000112235677888888887544332 12 222569999999999999999999999999999999999999
Q ss_pred HHHHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCC
Q 040758 729 HLYEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVD 764 (788)
Q Consensus 729 ~i~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~ 764 (788)
.+.+.|++ .|+|||+.=|.++ +.+..|++++|.+|+
T Consensus 208 ~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 208 QVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred HHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 99999875 6999999999975 567899999999985
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-29 Score=238.55 Aligned_cols=214 Identities=23% Similarity=0.347 Sum_probs=151.4
Q ss_pred cEEEeeeEEEcCC-------CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccC
Q 040758 498 LLDIEDLTLKTPT-------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570 (788)
Q Consensus 498 ~I~~~nvsf~y~~-------~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~ 570 (788)
.++++|+++.|.. ....+++.+||++++|+++||+|.||||||||.|+|+|..+|++|+|++|| ..+.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~---~~L~~- 79 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHF- 79 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECC---ccccc-
Confidence 3677788765532 123488999999999999999999999999999999999999999999953 33320
Q ss_pred CCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 571 TSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
. ......+.|-+++|||.-- -.-|-||. . +.++ | +..
T Consensus 80 -----------~--------Dy~~R~k~IRMiFQDpnts-~NPRl~iG--q-------iLd~-------P-------L~l 116 (267)
T COG4167 80 -----------G--------DYSFRSKRIRMIFQDPNTS-LNPRLRIG--Q-------ILDF-------P-------LRL 116 (267)
T ss_pred -----------c--------chHhhhhheeeeecCCccc-cChhhhhh--h-------Hhcc-------h-------hhh
Confidence 0 0111235699999999421 01122221 0 0000 0 000
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.-+.......+.+.+.|..+|+-. |...-++..||.|||||||+||||+-+|+|+|.|||..+||.....++
T Consensus 117 ~T~~~~~~R~~~i~~TL~~VGL~P--------dhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl 188 (267)
T COG4167 117 NTDLEPEQRRKQIFETLRMVGLLP--------DHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQL 188 (267)
T ss_pred cccCChHHHHHHHHHHHHHhccCc--------cccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHH
Confidence 000001112345677788777632 222334677999999999999999999999999999999999999888
Q ss_pred HHHHH----hcCCEEEEEecCcchhh-cCCEEEEEccCCCC
Q 040758 731 YEQIE----AAGITYISVGHRRTLYD-FHKRVLRISTVDQN 766 (788)
Q Consensus 731 ~~~L~----~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~ 766 (788)
.+..- +.|...|.++..+..++ .+|+|+||+.|+..
T Consensus 189 ~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vv 229 (267)
T COG4167 189 INLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVV 229 (267)
T ss_pred HHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCcee
Confidence 77542 36999999999999886 59999999999753
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=240.46 Aligned_cols=136 Identities=37% Similarity=0.590 Sum_probs=107.0
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.+..+. +....
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~-----------------------~~~~~ 57 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDI-----------------------DIEEL 57 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTS-----------------------HHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccc-----------------------ccccc
Confidence 7899999999999999999999999999999999999999999954432221 11234
Q ss_pred cceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 596 SRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 596 r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.++|++|++.++.+ |++||. .++++.++++.+++..
T Consensus 58 ~~~i~~~~~~~~~~~~~tv~~~~-----------------------------------------~~~~~~~~l~~l~~~~ 96 (137)
T PF00005_consen 58 RRRIGYVPQDPQLFPGLTVRENE-----------------------------------------SDERIEEVLKKLGLED 96 (137)
T ss_dssp HHTEEEEESSHCHHTTSBHHHHH-----------------------------------------HHHHHHHHHHHTTHGG
T ss_pred ccccccccccccccccccccccc-----------------------------------------cccccccccccccccc
Confidence 5679999999999876 699981 0134555666665543
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS 720 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS 720 (788)
.... ..+.....||||||||++|||||+++|+++|||||||
T Consensus 97 ~~~~-----~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 97 LLDR-----KIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GTGS-----BGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc-----ccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2221 1244457899999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-29 Score=242.60 Aligned_cols=213 Identities=23% Similarity=0.314 Sum_probs=145.0
Q ss_pred cEEEeeeEEEcC-----CCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 498 LLDIEDLTLKTP-----TSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 498 ~I~~~nvsf~y~-----~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
.+.++||+++|. +-.-++++|+||+++.||++++-||||+|||||+|+|.+-|.|++|+|++.-. |.-++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~-g~~vd---- 78 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHE-GEWVD---- 78 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeC-cchhh----
Confidence 377888877652 11237999999999999999999999999999999999999999999998421 11110
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
... -..+. -++-.|+.||||+|---.... .+..+.-+++ +.
T Consensus 79 ---l~~---a~pr~----vl~vRr~TiGyVSQFLRviPR-------V~aLdVvaeP----------------------ll 119 (235)
T COG4778 79 ---LVT---AEPRE----VLEVRRTTIGYVSQFLRVIPR-------VSALDVVAEP----------------------LL 119 (235)
T ss_pred ---hhc---cChHH----HHHHHHhhhHHHHHHHHhccC-------cchHHHHHhH----------------------HH
Confidence 000 00000 111234569999995321111 0100000000 00
Q ss_pred cCCCCCC--hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPS--TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~--~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.++...+ .+.....|.++++...+ ..-.+.++|||||||+.|||.|+-|-|||+|||||++||..+.+.+
T Consensus 120 ~~gv~~~~a~~~a~~Ll~rLnlperL--------W~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vV 191 (235)
T COG4778 120 ARGVPREVARAKAADLLTRLNLPERL--------WSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVV 191 (235)
T ss_pred HcCCCHHHHHHHHHHHHHHcCCCHHH--------hcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHH
Confidence 1111111 12344556665553211 1223678999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
.+.+.+ .|..+|=|-||.+.- ..|||++.+..
T Consensus 192 veli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 192 VELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred HHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999864 699999999998875 46999998864
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-29 Score=255.44 Aligned_cols=189 Identities=24% Similarity=0.282 Sum_probs=132.8
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
.++++|+||+|++|++++++|||||||||++|+|.|+..|++|.|.++|.+ .- + ..
T Consensus 37 ~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~---Pf--------------~-------~~ 92 (325)
T COG4586 37 IEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD---PF--------------R-------RR 92 (325)
T ss_pred hhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcC---cc--------------h-------hH
Confidence 358999999999999999999999999999999999999999999996432 21 0 00
Q ss_pred ccCcceEEEEc-cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH---
Q 040758 593 NRNSRGVFFLP-QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE--- 668 (788)
Q Consensus 593 ~~~r~~i~~v~-Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~--- 668 (788)
+..-+++++|+ |...+. +..+..+.-.+.++ +. ...++++.+.++
T Consensus 93 ~~~~~~~~~v~gqk~ql~---------Wdlp~~ds~~v~~~------------------Iy----~Ipd~~F~~r~~~l~ 141 (325)
T COG4586 93 EEYLRSIGLVMGQKLQLW---------WDLPALDSLEVLKL------------------IY----EIPDDEFAERLDFLT 141 (325)
T ss_pred HHHHHHHHHHhhhhheee---------eechhhhhHHHHHH------------------HH----hCCHHHHHHHHHHHH
Confidence 01113355543 322211 11110000001111 11 112233333332
Q ss_pred -hcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEE
Q 040758 669 -DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA----AGITYIS 743 (788)
Q Consensus 669 -~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~ 743 (788)
.++++.++ ..+...||-|||.|..||-||+++|++|+|||||=+||......|.+.|++ .+.||+.
T Consensus 142 eiLdl~~~l---------k~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVll 212 (325)
T COG4586 142 EILDLEGFL---------KWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212 (325)
T ss_pred HHhcchhhh---------hhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEE
Confidence 22222221 234677999999999999999999999999999999999999999999874 5999999
Q ss_pred EecCc-chhhcCCEEEEEccCCC
Q 040758 744 VGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 744 IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
.||.+ ++...||||+.|++|+.
T Consensus 213 TTH~~~di~~lc~rv~~I~~Gql 235 (325)
T COG4586 213 TTHIFDDIATLCDRVLLIDQGQL 235 (325)
T ss_pred EecchhhHHHhhhheEEeeCCcE
Confidence 99997 56789999999999975
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=249.59 Aligned_cols=183 Identities=24% Similarity=0.331 Sum_probs=139.0
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++|+||||++++||.+||||+||||||||+|+|+|.|+|++|+|.++|+- . +
T Consensus 39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v-~-------------------------~ 92 (249)
T COG1134 39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKV-A-------------------------P 92 (249)
T ss_pred eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceE-e-------------------------h
Confidence 3469999999999999999999999999999999999999999999985321 0 0
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
+ +--..|+-|| .|-||||.+-.. ..|+ ..+..++.+.+..+.+.
T Consensus 93 l--i~lg~Gf~pe------lTGreNi~l~~~------------~~G~----------------~~~ei~~~~~eIieFaE 136 (249)
T COG1134 93 L--IELGAGFDPE------LTGRENIYLRGL------------ILGL----------------TRKEIDEKVDEIIEFAE 136 (249)
T ss_pred h--hhcccCCCcc------cchHHHHHHHHH------------HhCc----------------cHHHHHHHHHHHHHHHH
Confidence 0 0112444332 478999965100 0000 00112234455566666
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCc
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRR 748 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~ 748 (788)
++++++. +..++|-|++-|+|+|-|.-.+|+|||+||..+.-|+.=.++-.+.+. ++++|+|+|||++
T Consensus 137 LG~fi~~---------PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~ 207 (249)
T COG1134 137 LGDFIDQ---------PVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL 207 (249)
T ss_pred HHHHhhC---------chhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 6655544 367899999999999999999999999999999999998887776664 3689999999999
Q ss_pred chh-hcCCEEEEEccCCC
Q 040758 749 TLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 749 ~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+ ++||++++|++|..
T Consensus 208 ~~I~~~Cd~~i~l~~G~i 225 (249)
T COG1134 208 GAIKQYCDRAIWLEHGQI 225 (249)
T ss_pred HHHHHhcCeeEEEeCCEE
Confidence 876 68999999999965
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-28 Score=253.08 Aligned_cols=90 Identities=30% Similarity=0.376 Sum_probs=76.2
Q ss_pred HHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cC
Q 040758 664 IKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AG 738 (788)
Q Consensus 664 ~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g 738 (788)
.+.++.+++.+. .....+.+||||||||++|||||+.+| ++|||||||++||+.+...+.+.|++ .|
T Consensus 118 ~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g 189 (226)
T cd03270 118 LGFLVDVGLGYL--------TLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLG 189 (226)
T ss_pred HHHHHHCCCCcc--------cccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCC
Confidence 456777665421 123456789999999999999999998 59999999999999999999888754 58
Q ss_pred CEEEEEecCcchhhcCCEEEEEc
Q 040758 739 ITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|+|+|||+++.+.+||++++|+
T Consensus 190 ~tii~itH~~~~~~~~d~i~~l~ 212 (226)
T cd03270 190 NTVLVVEHDEDTIRAADHVIDIG 212 (226)
T ss_pred CEEEEEEeCHHHHHhCCEEEEeC
Confidence 99999999998888999999993
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK11098 microcin B17 transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.5e-24 Score=239.81 Aligned_cols=301 Identities=23% Similarity=0.372 Sum_probs=266.0
Q ss_pred cccccChhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 142 APYWFSDDKVQARLQL--AAVFALTFATTGISVGFNFLGRDFYNALAD-------KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 142 ~p~~~~~~~~~~~~~l--~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-------~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
..+|.++++|..+..+ +++++++...+.+++.+..+.+.++|++.+ .|.+.|+..+..++.+.++.+++.+
T Consensus 77 ~~~~~s~~~w~~w~lLg~~~il~l~l~~v~l~V~~n~w~~~FydaLq~al~~~~~~d~~~F~~~l~~f~~i~~~~v~l~v 156 (409)
T PRK11098 77 FWFIYSPHPWQRWSILGSALIIFVTWFLVQVSVAVNAWYAPFYDLIQTALSSPGKVTIGQFYSEVGVFLGIALIAVVISV 156 (409)
T ss_pred hhcccCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677778888877 567777788888999999999999999887 4878888887777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILY 292 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~ 292 (788)
+..++...+..+||.|++++++.+|++.+ ..+||||||.+|+..+.+....+..+++..+++++.+..+|+
T Consensus 157 ~~~~~~~~l~irWR~wLT~~yl~~Wl~~r---------~ienPDQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW 227 (409)
T PRK11098 157 LNNFFVSHYVFRWRTAMNEYYMAHWQKLR---------HIEGAAQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLV 227 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999999999999999988543 346899999999999999888899999999999999999999
Q ss_pred hhhhh-------------HHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHH
Q 040758 293 GIYPP-------------LFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQ 359 (788)
Q Consensus 293 ~~~~~-------------L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~ 359 (788)
.++.. |+++++++.+++.+++.++++++.+++.++++.|++++..++...+|.| +.|.+
T Consensus 228 ~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~Lnf~qqr~EAdFR~~LVrvrenaE--------~~E~~ 299 (409)
T PRK11098 228 TLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPGLEFKNQRVEAAYRKELVYGEDDAD--------RATPP 299 (409)
T ss_pred HhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHhHhhhhhh--------HHHHH
Confidence 98764 6778888899999999999999999999999999999999999999987 45667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 360 LLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAI 439 (788)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l 439 (788)
.+.++|++..+++.+.......+..+...+..+..+++.+++++.++.|.+|+|.+++...+|.++.+.+++++..+..+
T Consensus 300 ~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~aP~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~l 379 (409)
T PRK11098 300 TVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTI 379 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998888878888888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhhhhhcccc
Q 040758 440 SAFSAVIDRLGEFDDVLDSS 459 (788)
Q Consensus 440 ~~~~~~~~rl~~~~~i~~~~ 459 (788)
.+..+..+|+.++.+.++..
T Consensus 380 ael~A~~~RL~~F~~~l~~~ 399 (409)
T PRK11098 380 VELLSIYKRLRSFEAALDGE 399 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 99999999999998776543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-28 Score=244.52 Aligned_cols=171 Identities=20% Similarity=0.250 Sum_probs=123.2
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCc
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS 596 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 596 (788)
+++++++++| +++|+||||||||||+++|+|+.+|..|...- +....++. ..+++.. . ...+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~-~~~~~~~~----------~~~~~~~-----~-~~~~ 75 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLR-GEKMSDVI----------FAGSETR-----K-PANF 75 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhc-ccCHHHHh----------ccCCCCC-----C-CCce
Confidence 7899999999 99999999999999999999998777543221 11111110 0111110 1 1234
Q ss_pred ceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccc
Q 040758 597 RGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYIL 676 (788)
Q Consensus 597 ~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 676 (788)
+.|++|+|++..+ |+.. ..+++.++++. ..
T Consensus 76 ~~v~~vfq~~~~~---------~~~~------------------------------------~~~~~~~~l~~---~~-- 105 (197)
T cd03278 76 AEVTLTFDNSDGR---------YSII------------------------------------SQGDVSEIIEA---PG-- 105 (197)
T ss_pred EEEEEEEEcCCCc---------eeEE------------------------------------ehhhHHHHHhC---CC--
Confidence 6799999999765 2110 01223333332 10
Q ss_pred ccCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcch
Q 040758 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTL 750 (788)
Q Consensus 677 ~~~~g~~t~~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~ 750 (788)
....+...||||||||++|||+++ .+|++++|||||++||+.....+.+.|++ .+.|+|+|||+++.
T Consensus 106 -------~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~ 178 (197)
T cd03278 106 -------KKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGT 178 (197)
T ss_pred -------ccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHH
Confidence 012345679999999999999986 56799999999999999999999998875 47999999999988
Q ss_pred hhcCCEEEEEcc
Q 040758 751 YDFHKRVLRIST 762 (788)
Q Consensus 751 ~~~~D~Ilvl~~ 762 (788)
+..||+++.|..
T Consensus 179 ~~~~d~v~~~~~ 190 (197)
T cd03278 179 MEAADRLYGVTM 190 (197)
T ss_pred HhhcceEEEEEe
Confidence 889999999975
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PRK12369 putative transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-24 Score=234.49 Aligned_cols=293 Identities=26% Similarity=0.433 Sum_probs=255.9
Q ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 150 KVQARLQLA--AVFALTFATTGISVGFNFLGRDFYNALADK-------DQEQFAKQLLYYLGAFAGGIPFFVLRDYARET 220 (788)
Q Consensus 150 ~~~~~~~l~--~~~~l~~~~~~l~~~~~~l~~~iid~l~~~-------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 220 (788)
+|.++..++ +++++.+..+.+++.+..+.+.++|++.++ +.+.|+..+..++++.++.+++.++..++...
T Consensus 10 ~~~~~~ll~~~~~i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~~~~~ 89 (326)
T PRK12369 10 KWALWAYGGLFFILLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDYFASH 89 (326)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666 567778888899999999999999999885 57788887777776666667777778889999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----
Q 040758 221 LALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYP---- 296 (788)
Q Consensus 221 l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~---- 296 (788)
+..+||.|++++++++|+.. .+..|||||||++|+..+.+....+..+++..+++++.+.++|+.++.
T Consensus 90 l~i~WR~wLT~~~l~~wl~~--------~~~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~ 161 (326)
T PRK12369 90 YAFRWREAMTFSYLKFWRNK--------RDNIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSL 161 (326)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------CCCCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcee
Confidence 99999999999999999862 234699999999999999998888999999999999999999998763
Q ss_pred --------hHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 297 --------PLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 297 --------~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
.+.++++++.+++.+++.++++++.+++.++++.|++++..++...+|.+. + .|.+.+.++|.+.
T Consensus 162 ~~~g~ipg~lv~~aiiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v 234 (326)
T PRK12369 162 PFLKDIPGSLVWIALLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGL 234 (326)
T ss_pred eecCCCcchHHHHHHHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHH
Confidence 356666888889999999999999999999999999999999999998877 3 4556778999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDR 448 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~r 448 (788)
.+++.+..........+...+..+..+++.+++++.++.|.+++|.+.+...+|.++.+.+++++..+..+++..+..+|
T Consensus 235 ~~n~~~~~~~~~~l~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~R 314 (326)
T PRK12369 235 RFNYFRLFLHYGYFNIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKR 314 (326)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhcc
Q 040758 449 LGEFDDVLD 457 (788)
Q Consensus 449 l~~~~~i~~ 457 (788)
+.++.+.++
T Consensus 315 L~~f~~~l~ 323 (326)
T PRK12369 315 LKEFEKNIE 323 (326)
T ss_pred HHHHHHHhh
Confidence 998876543
|
|
| >PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-24 Score=233.54 Aligned_cols=274 Identities=45% Similarity=0.717 Sum_probs=246.6
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
...++++|.+++++| ++.++..+..+++++++.++.+.+++.++.+.+.++|++..+|.+.|+..+..++++.+...++
T Consensus 4 ~~flr~f~~L~~~~~-~~~~~~~~~ll~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~~l~~~~~l~~~~~~l 82 (281)
T PF06472_consen 4 RQFLRRFWRLARIYW-PSERWKAWLLLLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWRLLLLFLLLAIASALL 82 (281)
T ss_pred hHHHHHHHHHHHHHc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999 6788888888888888888899999999999999999999999999988877777776666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC-CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI-IDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSN 289 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~-~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~ 289 (788)
.....|+...+..+||.|++.+++.+|+.+..||+++..+- .|||||||++|++.+.+....+..+++..+++++.+..
T Consensus 83 ~~~~~yl~~~L~l~wR~~Lt~~~~~~yl~~~~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~ 162 (281)
T PF06472_consen 83 NSILKYLRQRLALRWREWLTRHLHDRYLSNRTYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSV 162 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788999999999999999999999999999999998766 89999999999999999888899999999999999999
Q ss_pred HHHhhhhhHHH-HHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHH
Q 040758 290 ILYGIYPPLFV-VLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSA 368 (788)
Q Consensus 290 il~~~~~~L~l-~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~ 368 (788)
+++.+.+++.. +++++.++..+++.++++++.++..++++.|++++..+.+..+|.|.|+.+++|+.|.+++.++|.+.
T Consensus 163 ~L~~~~g~~~~~~~~~y~~~~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l 242 (281)
T PF06472_consen 163 ILWSISGWLGPWAALIYAILGTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDAL 242 (281)
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 99998888776 77888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 040758 369 FENLTRLLISSRNLEFFTSGY-RYLIQILPAAVVAPMY 405 (788)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 405 (788)
.++..+..........+...+ .++..+++.+++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~p~~ 280 (281)
T PF06472_consen 243 IDNWRRLIRRRLRLGFFTNFYVKYLSSILPYLVVAPPY 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 999888877777777888777 7777777777776554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=240.39 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=69.2
Q ss_pred ccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
.+.+..||||||||++|||||+ ++|+++||||||++||+.+.+.+.+.|++ .++|+|+++|+.+..+.||++++
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~~ 232 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFYG 232 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEE
Confidence 4557789999999999999996 46899999999999999999999998876 47899999999888899999999
Q ss_pred Ecc
Q 040758 760 IST 762 (788)
Q Consensus 760 l~~ 762 (788)
|+-
T Consensus 233 l~~ 235 (243)
T cd03272 233 VKF 235 (243)
T ss_pred EEE
Confidence 974
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=230.77 Aligned_cols=187 Identities=17% Similarity=0.139 Sum_probs=129.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEe-CCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVIN-EKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~-~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.|+++|+. +|.+ + ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ +..+.
T Consensus 5 ~i~l~nf~-~y~~--~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~--~~~~~-------- 68 (213)
T cd03279 5 KLELKNFG-PFRE--E---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE--NLRSV-------- 68 (213)
T ss_pred EEEEECCc-CcCC--c---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch--hHHHH--------
Confidence 48899988 7642 2 66777654 589999999999999999999994 666665555431 00000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
......+..|++++|++.. ...+..++.
T Consensus 69 --------------~~~~~~~~~v~~~f~~~~~----~~~~~r~~g---------------------------------- 96 (213)
T cd03279 69 --------------FAPGEDTAEVSFTFQLGGK----KYRVERSRG---------------------------------- 96 (213)
T ss_pred --------------hcCCCccEEEEEEEEECCe----EEEEEEecC----------------------------------
Confidence 0112334569999998721 111222211
Q ss_pred CCCChHHHHHH--HHhcccccccccCCCcccc-ccCCCCCChhHHHHHHHHHHHcc----------CCCEEEEecCCCCC
Q 040758 656 SKPSTDDLIKA--LEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLS----------KPQIVLLDESTSAL 722 (788)
Q Consensus 656 ~~~~~~~~~~~--l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~----------~p~iLiLDEpTSaL 722 (788)
.+.+++.+. ++.. +++.. ...+.+||||||||++|||||+. +|+++||||||++|
T Consensus 97 --l~~~~~~~~~~l~~g----------~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~l 164 (213)
T cd03279 97 --LDYDQFTRIVLLPQG----------EFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTL 164 (213)
T ss_pred --CCHHHHHHhhhhhhc----------chHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccC
Confidence 111222221 1211 12222 44567899999999999999974 67899999999999
Q ss_pred CHHHHHHHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 723 DEANEAHLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 723 D~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
|+.+...+.+.|++ .++|+|+|||+++.+ ..||+++++++|.
T Consensus 165 D~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 165 DPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCC
Confidence 99999999888764 489999999998765 5789999999874
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=235.65 Aligned_cols=190 Identities=16% Similarity=0.203 Sum_probs=130.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
..+++||||||||||||+++|+++..++ .|++...+. .++- . . . ......+..+++++|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~--~~li-----------~-~--~----~~~~~~~~~v~~~fq 84 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNL--QDLI-----------Y-K--R----GQAGITKASVTIVFD 84 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCH--HHHh-----------h-c--C----CCCCCcEEEEEEEEE
Confidence 5689999999999999999999999876 457776322 1110 0 0 0 000112347999999
Q ss_pred cccc---------C-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 605 RPYM---------V-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 605 ~~~l---------f-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
++.. . .-||.+|+.++..... + + .......+++.+.|+.+++..
T Consensus 85 ~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~---------------~---------i--n~~~~~~~~v~~~L~~vgL~~ 138 (251)
T cd03273 85 NSDKSQSPIGFENYPEITVTRQIVLGGTNKY---------------L---------I--NGHRAQQQRVQDLFQSVQLNV 138 (251)
T ss_pred cCCcccCcccccCCceEEEEEEEEcCCceEE---------------E---------E--CCEEeeHHHHHHHHHHcCCCC
Confidence 8631 1 2366666655321100 0 0 001123466777788777641
Q ss_pred -----cccc------CCCccccccCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--c
Q 040758 675 -----ILPR------LNSLDTTYEWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--A 737 (788)
Q Consensus 675 -----~~~~------~~g~~t~~e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~ 737 (788)
++.+ .+..+.....+.+||||||||++|||||+ .+|++++|||||++||+.+...+.+.|++ +
T Consensus 139 ~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~ 218 (251)
T cd03273 139 NNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK 218 (251)
T ss_pred CCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC
Confidence 0000 00111223556789999999999999997 58899999999999999999999998875 6
Q ss_pred CCEEEEEecCcchhhcCCEEEEEc
Q 040758 738 GITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
|.|+|+|||+.+..+.||+++-+.
T Consensus 219 g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 219 GSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred CCEEEEEECCHHHHHhCCEEEEEE
Confidence 899999999999999999998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=272.41 Aligned_cols=209 Identities=23% Similarity=0.293 Sum_probs=164.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..+..+|+++.|+.... +++++|+.|++||+.|+.|+|||||||++|+|.|..+|++|++.++|.+...-
T Consensus 563 ~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~--------- 632 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVS--------- 632 (885)
T ss_pred ceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccc---------
Confidence 46899999999975333 99999999999999999999999999999999999999999999954432211
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.+....++++||+||+..++.. |.||.+.+- |+.-|+.+
T Consensus 633 -------------~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~------------arlrG~~~--------------- 672 (885)
T KOG0059|consen 633 -------------TDFQQVRKQLGYCPQFDALWEELTGREHLEFY------------ARLRGLPR--------------- 672 (885)
T ss_pred -------------cchhhhhhhcccCCchhhhhhhccHHHHHHHH------------HHHcCCCh---------------
Confidence 0112356789999999988865 999988541 11111100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
..-.+.+.+.++.+++.+..+. ....+|||+|.|+++|-|++.+|++++|||||+|+||.+++.+.+.+.
T Consensus 673 -~di~~~v~~ll~~~~L~~~~~~---------~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~ 742 (885)
T KOG0059|consen 673 -SDIGSAIEKLLRLVGLGPYANK---------QVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIA 742 (885)
T ss_pred -hHHHHHHHHHHHHcCChhhhcc---------chhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 0011345677777777543332 356799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+.+|++||-++.. ..|||+..|.+|+.
T Consensus 743 ~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l 776 (885)
T KOG0059|consen 743 RLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQL 776 (885)
T ss_pred HHHhcCCEEEEEcCCHHHHHHHhhhhheeecCee
Confidence 4 466999999998765 57999999999975
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=234.37 Aligned_cols=94 Identities=27% Similarity=0.390 Sum_probs=79.1
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+..+.|+.+++++. ..+....+||||||||++|||+|+++ |+++||||||++||+.....+.+.|++
T Consensus 147 ~~~~~~L~~vgL~~l--------~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l 218 (261)
T cd03271 147 ARKLQTLCDVGLGYI--------KLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL 218 (261)
T ss_pred HHHHHHHHHcCCchh--------hhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 345567777766542 12345678999999999999999996 799999999999999999999888764
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.|.|+|+|+|+++.++.||++++|..
T Consensus 219 ~~~g~tvIiitH~~~~i~~aD~ii~Lgp 246 (261)
T cd03271 219 VDKGNTVVVIEHNLDVIKCADWIIDLGP 246 (261)
T ss_pred HhCCCEEEEEeCCHHHHHhCCEEEEecC
Confidence 58999999999998889999999953
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-25 Score=245.04 Aligned_cols=195 Identities=21% Similarity=0.273 Sum_probs=148.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..+.++||+|.|++ +..+++++||-|..++.+|+|||||||||||+|+++|...|..|.|.-.
T Consensus 388 pvi~~~nv~F~y~~-~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~---------------- 450 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD-NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH---------------- 450 (614)
T ss_pred CeEEEeccccCCCC-cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc----------------
Confidence 46999999999975 3378899999999999999999999999999999999999999999741
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
....+++-.|.. .|.+.|..+. .+++. ....
T Consensus 451 ------------------~H~~~~~y~Qh~-------~e~ldl~~s~---------------le~~~---------~~~~ 481 (614)
T KOG0927|consen 451 ------------------SHNKLPRYNQHL-------AEQLDLDKSS---------------LEFMM---------PKFP 481 (614)
T ss_pred ------------------ccccchhhhhhh-------HhhcCcchhH---------------HHHHH---------Hhcc
Confidence 011244334432 1222221110 00110 0011
Q ss_pred -CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 -KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 -~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++...|...|+.... ..-...+||+|||.||.+||++++.|.+|+|||||++||.++...+-++|.
T Consensus 482 ~~~~~e~~r~ilgrfgLtgd~--------q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiN 553 (614)
T KOG0927|consen 482 DEKELEEMRSILGRFGLTGDA--------QVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAIN 553 (614)
T ss_pred ccchHHHHHHHHHHhCCCccc--------cccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHh
Confidence 12346777888888775211 123356799999999999999999999999999999999999999999999
Q ss_pred hcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 AAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+...++|++||+.-++ ..+++|++.++|..
T Consensus 554 e~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 554 EFPGGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred ccCCceeeeechhhHHHHHHHHhHhhccCce
Confidence 9888999999998776 57899998888754
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=220.39 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=121.7
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh----cCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMA----GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~----gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
.++++.+| +++|+||||||||||+++|. |...|++|.+.. +...+ ....
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~---~~~~i-----------------------~~~~ 68 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAH---DPKLI-----------------------REGE 68 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccc---hHHHH-----------------------hCCC
Confidence 34567777 99999999999999999994 998888887752 11111 1112
Q ss_pred CcceEEEEcccc-----ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHH
Q 040758 595 NSRGVFFLPQRP-----YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668 (788)
Q Consensus 595 ~r~~i~~v~Q~~-----~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~ 668 (788)
.+..+++++|++ .+.. -|+.+|+.++.. +++.+.+
T Consensus 69 ~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~--------------------------------------~~~~~~~- 109 (204)
T cd03240 69 VRAQVKLAFENANGKKYTITRSLAILENVIFCHQ--------------------------------------GESNWPL- 109 (204)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEhhHhhceeeech--------------------------------------HHHHHHH-
Confidence 345699999998 2222 277777755310 1111111
Q ss_pred hcccccccccCCCccccccCCCCCChhHHHH------HHHHHHHccCCCEEEEecCCCCCCHHHHH-HHHHHHHh---c-
Q 040758 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQR------LAFARLLLSKPQIVLLDESTSALDEANEA-HLYEQIEA---A- 737 (788)
Q Consensus 669 ~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQR------iaIARALl~~p~iLiLDEpTSaLD~~se~-~i~~~L~~---~- 737 (788)
.+.+..||+||+|| ++||||++.+|++++|||||++||+.+.. .+.+.+++ .
T Consensus 110 -----------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~ 172 (204)
T cd03240 110 -----------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQK 172 (204)
T ss_pred -----------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcc
Confidence 12345699999996 79999999999999999999999999999 88888754 3
Q ss_pred CCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 738 GITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++|+|+|||+++....||++++|++.+
T Consensus 173 ~~~iiiitH~~~~~~~~d~i~~l~~~~ 199 (204)
T cd03240 173 NFQLIVITHDEELVDAADHIYRVEKDG 199 (204)
T ss_pred CCEEEEEEecHHHHhhCCEEEEEeeCC
Confidence 789999999998888899999997653
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-25 Score=227.61 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=124.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|.. +|. +..+++++++ ++++|+|||||||||++++|... +| .+..
T Consensus 5 ~l~l~nfk-~~~--~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~----------~G---~~~~--------- 54 (212)
T cd03274 5 KLVLENFK-SYA--GEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFV----------FG---FRAS--------- 54 (212)
T ss_pred EEEEECcc-cCC--CCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHH----------hc---cCHH---------
Confidence 37777775 674 4568999988 89999999999999999999722 11 1110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
. ..++++++++|+..+++. |.++++.+-...... +.+. ..++.....
T Consensus 55 -------------~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~l~----~~g~~~~~~ 102 (212)
T cd03274 55 -------------K--MRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDK-------------PLLK----SKGIDLDHN 102 (212)
T ss_pred -------------H--hhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCH-------------HHHH----HCCcCCCCC
Confidence 0 012457888888766543 555554432110000 0000 000000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.. .-...++++.+++. ++. ......||+|||||++||||++. +|++++|||||++||+.+...+.+
T Consensus 103 ~~-~v~~~~~~~~~~L~------~~~---~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~ 172 (212)
T cd03274 103 RF-LILQGEVEQIAQMP------KKS---WKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVAN 172 (212)
T ss_pred ce-EEcCCcEEEeeccc------ccc---ccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 00 00001111222221 111 22356799999999999999963 589999999999999999999999
Q ss_pred HHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 733 QIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 733 ~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
.+++ .+.|+|++||+.+..+.||++++|..-
T Consensus 173 ~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~~ 205 (212)
T cd03274 173 YIKERTKNAQFIVISLRNNMFELADRLVGIYKT 205 (212)
T ss_pred HHHHHcCCCEEEEEECcHHHHHhCCEEEEEEec
Confidence 9876 578999999999889999999999763
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=237.65 Aligned_cols=225 Identities=20% Similarity=0.298 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++|++.. ..++|+||++++||+++|.|--|||+|-|+++|.|..++.+|+|.+|| +.+..+
T Consensus 263 ~l~v~~l~~~------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G---~~v~~~------- 326 (500)
T COG1129 263 VLEVRNLSGG------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDG---KPVRIR------- 326 (500)
T ss_pred EEEEecCCCC------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECC---EEccCC-------
Confidence 5788888742 258999999999999999999999999999999999999999999954 433210
Q ss_pred hhcccccccchhcccccCcceEEEEcccc---ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP---YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~---~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.+.+..+..|+|||.|- -+| ..+|++|+.++..... .... ++..
T Consensus 327 ------------sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~----------~~~~-~i~~--------- 374 (500)
T COG1129 327 ------------SPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF----------SRRG-LIDR--------- 374 (500)
T ss_pred ------------CHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh----------cccc-ccCh---------
Confidence 12234567899999865 345 5699999987622110 0000 1100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....+...+..+.+++.. ........+||||-||++.|||.|..+|++|||||||.++|.-+..+|++.
T Consensus 375 ---~~e~~~~~~~~~~l~Ik~--------~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~l 443 (500)
T COG1129 375 ---RKERALAERYIRRLRIKT--------PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRL 443 (500)
T ss_pred ---HHHHHHHHHHHHhcCccc--------CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHH
Confidence 011122333444433321 011244678999999999999999999999999999999999999999998
Q ss_pred HHh---cCCEEEEEecCc-chhhcCCEEEEEccCCCCCCCCCeEEEecCcccccc
Q 040758 734 IEA---AGITYISVGHRR-TLYDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYN 784 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~~~~~~~~~~~~~~~~~~ 784 (788)
+++ +|+++|+||-.+ +++..||||+||.+|+...+..+= .++++.++.
T Consensus 444 i~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~---~~tee~im~ 495 (500)
T COG1129 444 IRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE---EATEEAIMA 495 (500)
T ss_pred HHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc---cCCHHHHHH
Confidence 875 799999999996 677899999999999765433221 155555544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=229.57 Aligned_cols=215 Identities=23% Similarity=0.289 Sum_probs=138.1
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...+.++|+++.|+ +..+++|..|++.+|+++||+|+|||||||++++|.|-..|..-++-+
T Consensus 73 s~dvk~~sls~s~~--g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~---------------- 134 (614)
T KOG0927|consen 73 SRDVKIESLSLSFH--GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF---------------- 134 (614)
T ss_pred cccceeeeeeeccC--CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccch----------------
Confidence 34699999999997 568999999999999999999999999999999999988886544432
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccc------cchhhHHHHhcCCccchhhhhhhh
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEE------VKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~------~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
..+.++..--..+..+-+........ .++...+++......+.. -++
T Consensus 135 ------------------------y~ls~e~~ps~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~---~~~ 187 (614)
T KOG0927|consen 135 ------------------------YLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDE---LYE 187 (614)
T ss_pred ------------------------hhhcccCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHH---HHH
Confidence 11111110000111111111100000 000000000000000000 011
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccc--cccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT--TYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t--~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
...+.....-+.++.++|..+ |+.. ...+...||||||.|+|+||||+.+|++|+|||||++||.++.
T Consensus 188 r~~~~d~~~~~~k~~~il~gl----------gf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~ 257 (614)
T KOG0927|consen 188 RLDEMDNDTFEAKAAKILHGL----------GFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAI 257 (614)
T ss_pred HHHhhCchhHHHHHHHHHHhc----------CCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHH
Confidence 111111111112233333322 2222 2456778999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-EEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 728 AHLYEQIEAAGI-TYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 728 ~~i~~~L~~~g~-TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
..+.+.|.+..+ |+++++|.-+++ ..|.+|+.+++++.
T Consensus 258 ~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 258 VWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred HHHHHHHHhccCceEEEEecchhhhhhHhhhhheecccce
Confidence 999999998777 899999998876 57999999998864
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-24 Score=206.33 Aligned_cols=198 Identities=26% Similarity=0.298 Sum_probs=143.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++++||+... -|-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.+.+..
T Consensus 3 l~qln~v~~~t------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~---------- 65 (248)
T COG4138 3 LMQLNDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAW---------- 65 (248)
T ss_pred eeeeccccccc------cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHH----------
Confidence 46777877542 378899999999999999999999999999999986 5689999965543322
Q ss_pred hhcccccccchhcccccCcceEEEEcccc-ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+.++-+|+.|.. ..|..-|..-+....+..
T Consensus 66 -------------~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~-------------------------------- 100 (248)
T COG4138 66 -------------SATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDK-------------------------------- 100 (248)
T ss_pred -------------hHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchH--------------------------------
Confidence 1112334446665543 345445555444432211
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~-------~p~iLiLDEpTSaLD~~se~~ 729 (788)
.-..++.++...+++++.+ +...+.|||||+|||-+|-.+++ ..++|+||||.++||...+..
T Consensus 101 -~~a~~i~~i~~~L~l~DKL---------~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~a 170 (248)
T COG4138 101 -TRTELLNDVAGALALDDKL---------GRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSA 170 (248)
T ss_pred -HHHHHHHHHHhhhcccchh---------hhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHH
Confidence 1113344555555555433 33457799999999999988886 347999999999999999987
Q ss_pred HHHHHH---hcCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 730 LYEQIE---AAGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 730 i~~~L~---~~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
+.+.|. +.|.|||+.+||+ .+++.||+++.+..|+..-
T Consensus 171 Ldrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~ 212 (248)
T COG4138 171 LDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLA 212 (248)
T ss_pred HHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEe
Confidence 776654 5899999999997 5889999999999997643
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=252.34 Aligned_cols=211 Identities=22% Similarity=0.226 Sum_probs=159.2
Q ss_pred cEEEeeeEEEc--CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEEeeccCcccccCCCc
Q 040758 498 LLDIEDLTLKT--PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS--DGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 498 ~I~~~nvsf~y--~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
....+|+.+.- .++.+.+|+||+=-++||..+||+|+||||||||+++|+|--. ..+|+|+++|.. .
T Consensus 787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p---~------ 857 (1391)
T KOG0065|consen 787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFP---K------ 857 (1391)
T ss_pred eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCee---C------
Confidence 45556666543 3345679999999999999999999999999999999999653 236888885432 1
Q ss_pred cchhhhcccccccchhcccccCcceEEEEcccc-ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
+.+..+|.+|||.|+. ++..-||||-+.|...-.-. ..+
T Consensus 858 -----------------~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp-------------~~v---------- 897 (1391)
T KOG0065|consen 858 -----------------DQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLP-------------KEV---------- 897 (1391)
T ss_pred -----------------chhhhccccceeecccccCcccchHHHHHHHHHHcCC-------------CcC----------
Confidence 1124567799998865 45567999999884321100 000
Q ss_pred cCCCCCCh-HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC-CEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPST-DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP-QIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~-~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p-~iLiLDEpTSaLD~~se~~i 730 (788)
...+. +-++++++.++++...+.+ +|..|..||..||+|+.||=-|+.|| .||+|||||||||+.+...|
T Consensus 898 ---~~~ek~~yVe~Vi~lleL~~~~dai-----VG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i 969 (1391)
T KOG0065|consen 898 ---SDEEKYEYVEEVIELLELKEYADAL-----VGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIV 969 (1391)
T ss_pred ---CHHHHHHHHHHHHHHhCchhhhhhh-----ccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHH
Confidence 00111 3356677777776544322 36667889999999999999999999 99999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcc--hhhcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRT--LYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~--~~~~~D~Ilvl~~g~~ 765 (788)
.+.+++ .|+||+..=|.++ +.+..|+++.|++|++
T Consensus 970 ~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGq 1009 (1391)
T KOG0065|consen 970 MRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQ 1009 (1391)
T ss_pred HHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCe
Confidence 999876 6999999999986 4677899999999864
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-23 Score=225.95 Aligned_cols=193 Identities=24% Similarity=0.367 Sum_probs=130.5
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|..++.+.+|+ ++.+|++-++++..|.++||||+||+|||||+|+|+. |.|... ..
T Consensus 78 ~~Di~~~~fdLa~G--~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-----~v-------- 136 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYG--GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-----HV-------- 136 (582)
T ss_pred ccceeeeeeeeeec--chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-----Cc--------
Confidence 44799999999995 5789999999999999999999999999999999998 555321 00
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.++.++.... .-|+ .+-.+|-+..+.... + .+.
T Consensus 137 -----eqE~~g~~t~-----------~~~~-~l~~D~~~~dfl~~e------------------------~---~l~--- 169 (582)
T KOG0062|consen 137 -----EQEVRGDDTE-----------ALQS-VLESDTERLDFLAEE------------------------K---ELL--- 169 (582)
T ss_pred -----hhheeccchH-----------HHhh-hhhccHHHHHHHHhh------------------------h---hhh---
Confidence 0000000000 0010 011111111111100 0 000
Q ss_pred CCCChHHHHH-HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 656 SKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 656 ~~~~~~~~~~-~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..-+.+++.. +|..+|....+ .......||||-|-|+|+||||+.+|+||+|||||+.||..+..++.+.|
T Consensus 170 ~~~~l~ei~~~~L~glGFt~em--------q~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL 241 (582)
T KOG0062|consen 170 AGLTLEEIYDKILAGLGFTPEM--------QLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYL 241 (582)
T ss_pred ccchHHHHHHHHHHhCCCCHHH--------HhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHH
Confidence 0002244444 55554432211 12345679999999999999999999999999999999999999999999
Q ss_pred HhcCCEEEEEecCcchhh-cCCEEEEEccCC
Q 040758 735 EAAGITYISVGHRRTLYD-FHKRVLRISTVD 764 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~ 764 (788)
.....|+|+|||+..++. .|.-|+.+++-+
T Consensus 242 ~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 242 QTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 998899999999988764 577787777543
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=212.14 Aligned_cols=76 Identities=21% Similarity=0.302 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHHHccC----CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 689 SSVLSLGEQQRLAFARLLLSK----PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~----p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
..+||||||||++||||++.+ |+++||||||++||+.+...+.+.+.+ .|.|+|+|||+.++.+.||++++|.
T Consensus 153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~~ 232 (247)
T cd03275 153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGVY 232 (247)
T ss_pred HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEEE
Confidence 378999999999999999864 899999999999999999999988865 4899999999999999999999998
Q ss_pred cCC
Q 040758 762 TVD 764 (788)
Q Consensus 762 ~g~ 764 (788)
+-.
T Consensus 233 ~~~ 235 (247)
T cd03275 233 RDQ 235 (247)
T ss_pred ecC
Confidence 643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.3e-22 Score=212.46 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=142.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.+-+.||+|.||+ .++++++++|-|.=-.++|||||||.|||||++||.|-++|+.|+.+-+
T Consensus 585 PvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---------------- 647 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---------------- 647 (807)
T ss_pred CeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----------------
Confidence 46889999999985 7789999999999999999999999999999999999999999988631
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|-+||+.-|.. .|.+....... +++.. .-
T Consensus 648 ------------------hrL~iG~FdQh~-------~E~L~~Eetp~---------------EyLqr----------~F 677 (807)
T KOG0066|consen 648 ------------------HRLRIGWFDQHA-------NEALNGEETPV---------------EYLQR----------KF 677 (807)
T ss_pred ------------------ceeeeechhhhh-------HHhhccccCHH---------------HHHHH----------hc
Confidence 133489877764 23332211100 01100 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
.-...+....|-.+|+.... .| -....||||||-||++|-.-+..|++|||||||++||.++-..+-+++.+
T Consensus 678 Nlpyq~ARK~LG~fGL~sHA------HT--ikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 678 NLPYQEARKQLGTFGLASHA------HT--IKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred CCChHHHHHHhhhhhhhhcc------ce--EeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 11234555556555553211 11 12346999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCcchhh--cCCEEEEEccC
Q 040758 737 AGITYISVGHRRTLYD--FHKRVLRISTV 763 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~--~~D~Ilvl~~g 763 (788)
.+..||+|||+..++. .| ..+|+++-
T Consensus 750 y~GgVi~VsHDeRLi~eT~C-~LwVvE~Q 777 (807)
T KOG0066|consen 750 YNGGVIMVSHDERLIVETDC-NLWVVENQ 777 (807)
T ss_pred ccCcEEEEecccceeeecCc-eEEEEccC
Confidence 8889999999977654 35 56677654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=246.10 Aligned_cols=89 Identities=31% Similarity=0.375 Sum_probs=75.7
Q ss_pred HHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc---cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cC
Q 040758 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL---SKPQIVLLDESTSALDEANEAHLYEQIEA---AG 738 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl---~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g 738 (788)
+.|+.+++.+. ..+....+||||||||++|||||+ ++|+++||||||++||+.+.+.+.+.|++ .|
T Consensus 791 ~~L~~vGL~~l--------~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G 862 (1809)
T PRK00635 791 HALCSLGLDYL--------PLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQG 862 (1809)
T ss_pred HHHHHcCCcch--------hhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 45666665543 123446789999999999999998 69999999999999999999999988764 69
Q ss_pred CEEEEEecCcchhhcCCEEEEEc
Q 040758 739 ITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|+|+|+|+++.++.||++++|.
T Consensus 863 ~TVIiIsHdl~~i~~aDrVi~L~ 885 (1809)
T PRK00635 863 HTVVIIEHNMHVVKVADYVLELG 885 (1809)
T ss_pred CEEEEEeCCHHHHHhCCEEEEEc
Confidence 99999999998889999999996
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.5e-21 Score=233.30 Aligned_cols=91 Identities=27% Similarity=0.398 Sum_probs=77.0
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
..+.|+.+++++. ..+....+||||||||++|||+|+++| +++||||||++||+.+...+.+.|++
T Consensus 810 ~l~~L~~vgL~~l--------~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~ 881 (943)
T PRK00349 810 KLQTLVDVGLGYI--------KLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVD 881 (943)
T ss_pred HHHHHHHCCCCcc--------cccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHh
Confidence 3455666655432 224456789999999999999999999 99999999999999999999888764
Q ss_pred cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|+|+++.++.||+|++|.
T Consensus 882 ~G~TVIiitH~~~~i~~aD~ii~Lg 906 (943)
T PRK00349 882 KGNTVVVIEHNLDVIKTADWIIDLG 906 (943)
T ss_pred CCCEEEEEecCHHHHHhCCEEEEec
Confidence 5899999999999888999999995
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-21 Score=212.13 Aligned_cols=198 Identities=20% Similarity=0.277 Sum_probs=157.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.+++.+|+|.|+.++-+.+.++++.++.-.++++||+||+||||++|++.+-..|.+|-+.+.
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~---------------- 424 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH---------------- 424 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec----------------
Confidence 4699999999997643368899999999999999999999999999999999999999988651
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|.+|+|-.|...=+ .. +..+..++++. ...
T Consensus 425 ------------------~r~ri~~f~Qhhvd~---l~-------------------~~v~~vd~~~~---------~~p 455 (582)
T KOG0062|consen 425 ------------------PRLRIKYFAQHHVDF---LD-------------------KNVNAVDFMEK---------SFP 455 (582)
T ss_pred ------------------ccceecchhHhhhhH---HH-------------------HHhHHHHHHHH---------hCC
Confidence 245699988865322 00 00111111111 112
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++++.+.|..+|++..+.. .....||||||-||++|-....+|.+|+|||||+.||.++-..+-++|+.
T Consensus 456 G~~~ee~r~hl~~~Gl~g~la~--------~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~ 527 (582)
T KOG0062|consen 456 GKTEEEIRRHLGSFGLSGELAL--------QSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKN 527 (582)
T ss_pred CCCHHHHHHHHHhcCCCchhhh--------ccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHh
Confidence 2367899999999988632221 11356999999999999999999999999999999999999999999999
Q ss_pred cCCEEEEEecCcchhh-cCCEEEEEccCCCCC
Q 040758 737 AGITYISVGHRRTLYD-FHKRVLRISTVDQNS 767 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~~-~~D~Ilvl~~g~~~~ 767 (788)
-+..||+|||+.++++ .|+.+++.++|+...
T Consensus 528 F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 528 FNGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cCCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 8889999999999875 699999999997543
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.5e-21 Score=194.86 Aligned_cols=82 Identities=17% Similarity=0.063 Sum_probs=71.3
Q ss_pred cCCCCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c--C-CEEEEEecCcchhhcCCE
Q 040758 687 EWSSVLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA---A--G-ITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~--g-~TvI~IaHr~~~~~~~D~ 756 (788)
....+||+|||||++||||+ +.+|+++||||||++||+.+...+.+.|.+ . + .|+|+++|+++.+..+|+
T Consensus 105 ~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~ 184 (198)
T cd03276 105 RDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDD 184 (198)
T ss_pred CcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccc
Confidence 44667999999999999999 699999999999999999999999887754 1 3 589999999988777799
Q ss_pred EEEEccCCCCCC
Q 040758 757 VLRISTVDQNSS 768 (788)
Q Consensus 757 Ilvl~~g~~~~~ 768 (788)
|-+|..+++.++
T Consensus 185 v~~~~~~~~~~~ 196 (198)
T cd03276 185 VKVFRMKDPRGP 196 (198)
T ss_pred eeEEEecCCCCC
Confidence 999999877654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=227.31 Aligned_cols=77 Identities=23% Similarity=0.309 Sum_probs=70.5
Q ss_pred cccCCCCCChhHHHHHHHHHHHcc---CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEE
Q 040758 685 TYEWSSVLSLGEQQRLAFARLLLS---KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 685 ~~e~g~~LSGGQrQRiaIARALl~---~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.+....+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|++ .|.|+|+|+|+++.++.||+|+
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i~~aD~ii 901 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVIKTADYII 901 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEE
Confidence 356678899999999999999997 5999999999999999999999988864 5899999999999888999999
Q ss_pred EEc
Q 040758 759 RIS 761 (788)
Q Consensus 759 vl~ 761 (788)
+|.
T Consensus 902 ~Lg 904 (924)
T TIGR00630 902 DLG 904 (924)
T ss_pred Eec
Confidence 995
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=203.31 Aligned_cols=183 Identities=24% Similarity=0.273 Sum_probs=127.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++..++++.|++ ..|.-=.=+|..||+++++||||-||||++++|+|...|++|. .. +
T Consensus 342 lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~-~~------~----------- 400 (591)
T COG1245 342 LVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS-EE------D----------- 400 (591)
T ss_pred eeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC-Cc------c-----------
Confidence 3455555555531 1232223345677899999999999999999999999999997 21 1
Q ss_pred hhcccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
-.++|=||-.. -|++||++-+.-.... .+.
T Consensus 401 -------------------~~vSyKPQyI~~~~~gtV~~~l~~~~~~-------------~~~----------------- 431 (591)
T COG1245 401 -------------------LKVSYKPQYISPDYDGTVEDLLRSAIRS-------------AFG----------------- 431 (591)
T ss_pred -------------------ceEeecceeecCCCCCcHHHHHHHhhhh-------------hcc-----------------
Confidence 12778888431 2677887765421110 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
+..--.+.++-+++++++++ +..+|||||.||||||-||.+++++.+||||++.||.+..-.+-+.+++
T Consensus 432 --~s~~~~ei~~pl~l~~i~e~---------~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR 500 (591)
T COG1245 432 --SSYFKTEIVKPLNLEDLLER---------PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR 500 (591)
T ss_pred --cchhHHhhcCccchHHHHhc---------ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH
Confidence 00011123333444444333 3556999999999999999999999999999999999988776666653
Q ss_pred ----cCCEEEEEecCcchhhc-CCEEEEEc
Q 040758 737 ----AGITYISVGHRRTLYDF-HKRVLRIS 761 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~-~D~Ilvl~ 761 (788)
.++|.++|-|++-.+.+ +||++|.+
T Consensus 501 ~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 501 FIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred HHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 68999999999988875 89999997
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=199.65 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=161.9
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC-cccccCCCcc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR-EETDAHTSDV 574 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~-~~i~~~~~~~ 574 (788)
...++++|++..-+. +-+.++|+||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.|. ...+
T Consensus 255 ~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~------ 327 (501)
T COG3845 255 EVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS------ 327 (501)
T ss_pred CeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC------
Confidence 346999999987643 45689999999999999999999999999999999999999999999976553 1111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccc----cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY----MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~----lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
.....+..++|||.|.. ..+.|+.||+.++..... ||....
T Consensus 328 ----------------~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~--------------~~~~~g----- 372 (501)
T COG3845 328 ----------------PRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKK--------------PFSRGG----- 372 (501)
T ss_pred ----------------HHHHHhcCCccCChhhccCccccCccHHHHhhhhhcccc--------------cccccc-----
Confidence 11233567999999873 345699999987644311 111100
Q ss_pred hccCCCCCChH----HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 651 VGRKSSKPSTD----DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 651 ~~~~~~~~~~~----~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
--+.. ...+..+++.+.. .........||||.+||+-+||-|.++|++||..+||-+||..+
T Consensus 373 ------~l~~~~i~~~a~~li~~fdVr~--------~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA 438 (501)
T COG3845 373 ------FLDRRAIRKFARELIEEFDVRA--------PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGA 438 (501)
T ss_pred ------ccCHHHHHHHHHHHHHHcCccC--------CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHH
Confidence 00111 1223333332210 01123456799999999999999999999999999999999999
Q ss_pred HHHHHHHHHh---cCCEEEEEecCcc-hhhcCCEEEEEccCCCCC
Q 040758 727 EAHLYEQIEA---AGITYISVGHRRT-LYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 727 e~~i~~~L~~---~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~~ 767 (788)
.+.|.+.|.+ .|+.|++||-+++ +...||||.||.+|+..+
T Consensus 439 ~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~ 483 (501)
T COG3845 439 IEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVG 483 (501)
T ss_pred HHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceec
Confidence 9999988753 7999999999985 568999999999998644
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=184.65 Aligned_cols=218 Identities=21% Similarity=0.297 Sum_probs=148.4
Q ss_pred EEEeeeEEEc--CCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCCceEEEeeccCcccccCCC
Q 040758 499 LDIEDLTLKT--PTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS----DGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 499 I~~~nvsf~y--~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~----p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+.++|++..+ +.+.-.+++++|+++..||+-++||+||||||-+.|.|+|..+ .+.-+..+++.|.-.+.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~---- 79 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLS---- 79 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCC----
Confidence 4556666544 3334468999999999999999999999999999999999754 34445555322221111
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCC---CCHHHHhcCCCCccccchhhHHHHhcCCccchhh-hhhh
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL---GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTS-AQKL 648 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~---~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~-~~~~ 648 (788)
++. ..+-.-+.|++++|+|.--- .+|--++.-. .|+-+- ...+
T Consensus 80 ------Pr~---------RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~------------------IP~wTfkgrWW 126 (330)
T COG4170 80 ------PRE---------RRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQN------------------IPAWTYKGRWW 126 (330)
T ss_pred ------hHH---------hhhhhccchhhhhcCchhhcChHHHHHHHHHhh------------------CccccccchHh
Confidence 100 00112356899999995321 1222222100 011000 0001
Q ss_pred hhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHH
Q 040758 649 ENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA 728 (788)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~ 728 (788)
+..+. ...+.++.|.++|+.+..+ -...++.+|--||-|+|.||-|+..+|++||.||||+++|+.+..
T Consensus 127 q~F~W-----rKrrAIeLLHrVGIKdHkD------IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~ 195 (330)
T COG4170 127 QRFGW-----RKRRAIELLHRVGIKDHKD------IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQA 195 (330)
T ss_pred hhhch-----hHHHHHHHHHHhccccHHH------HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHH
Confidence 11111 2346788899998865432 223456679999999999999999999999999999999999999
Q ss_pred HHHHHHHh----cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 729 HLYEQIEA----AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 729 ~i~~~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+|++.|.+ .|.|+++|+|++..+ +.||+|-||-=|.
T Consensus 196 QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ 236 (330)
T COG4170 196 QIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQ 236 (330)
T ss_pred HHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecc
Confidence 99998864 589999999998655 6899999997764
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-20 Score=190.03 Aligned_cols=76 Identities=20% Similarity=0.144 Sum_probs=65.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH-HH---HhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE-QI---EAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~-~L---~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+++|+|+||+..|++++ .+|+++++||||++||+.....+.. .+ .+.|.|+|++||+.++.+.||++++|++|.
T Consensus 89 ~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 89 LSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENAS 167 (200)
T ss_pred cchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEE
Confidence 356999999999999885 8999999999999999999887743 33 346899999999988888999999999886
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 168 l 168 (200)
T cd03280 168 M 168 (200)
T ss_pred E
Confidence 5
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-18 Score=171.12 Aligned_cols=213 Identities=21% Similarity=0.280 Sum_probs=141.0
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|++.++.|+|+. ..|++-|+|++++.|....+||.||||||||+|+|+|-.-...|.|.+.|.+ .- ++.
T Consensus 11 ~~aievsgl~f~y~~-~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgrs---aF-hDt--- 82 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKV-SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRS---AF-HDT--- 82 (291)
T ss_pred cceEEEeccEEeccc-CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcC---cc-ccc---
Confidence 346999999999986 4589999999999999999999999999999999999988888999985433 10 000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++. ......|+.-+=. .+..+.. +...+ -.+...+-.-+++...
T Consensus 83 ---------------~l~-~Sgdl~YLGgeW~-------~~~~~ag-evplq------------~D~sae~mifgV~g~d 126 (291)
T KOG2355|consen 83 ---------------SLE-SSGDLSYLGGEWS-------KTVGIAG-EVPLQ------------GDISAEHMIFGVGGDD 126 (291)
T ss_pred ---------------ccc-ccCceeEeccccc-------ccccccc-ccccc------------ccccHHHHHhhccCCC
Confidence 000 0111333322110 0000000 00000 0000000000111100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
. ...+.++..|+ ++ ..-+-..+|-|||.||.||..|++.=++|+|||-|--||.-....+.+.++
T Consensus 127 p-~Rre~LI~iLD---Id-----------l~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlk 191 (291)
T KOG2355|consen 127 P-ERREKLIDILD---ID-----------LRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLK 191 (291)
T ss_pred h-hHhhhhhhhee---cc-----------ceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHH
Confidence 0 11123333332 11 011245699999999999999999999999999999999999999999997
Q ss_pred h----cCCEEEEEecCc-chhhcCCEEEEEccCCCCC
Q 040758 736 A----AGITYISVGHRR-TLYDFHKRVLRISTVDQNS 767 (788)
Q Consensus 736 ~----~g~TvI~IaHr~-~~~~~~D~Ilvl~~g~~~~ 767 (788)
+ .|.|++..||-- .+...+.+++.|.+|+...
T Consensus 192 eEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 192 EECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 4 599999999985 4667899999999997643
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-18 Score=173.88 Aligned_cols=71 Identities=21% Similarity=0.353 Sum_probs=66.0
Q ss_pred CChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 692 LSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 692 LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
||||||||++|||+++ .+|+++++||||++||+.....+.+.|.+ .|+|+|+|||+.+....+|+++.+++
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 9999999999999995 79999999999999999999999888864 47999999999988889999999986
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=183.37 Aligned_cols=89 Identities=10% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 689 SSVLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
...|||||+||+++||+++. +|++++|||||++||+.+...+.+.+++ .+.|+|+|||++++...||+++.|++
T Consensus 168 ~~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~ 247 (276)
T cd03241 168 AKIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEK 247 (276)
T ss_pred hhhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEE
Confidence 34699999999999997653 9999999999999999999999999875 57899999999988899999999998
Q ss_pred CCCCCCCCCeEEEecCccc
Q 040758 763 VDQNSSQSNWKLEFIDQES 781 (788)
Q Consensus 763 g~~~~~~~~~~~~~~~~~~ 781 (788)
+ +.++|....+++.+
T Consensus 248 ~----~~~~~~~~~~~~~~ 262 (276)
T cd03241 248 E----VEGGRTVTKVRELD 262 (276)
T ss_pred e----cCCCeEEEEhhhcC
Confidence 5 55779888887754
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.8e-18 Score=174.53 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=64.8
Q ss_pred ccCCCCCChhHHHHHHHHHH----HccCCCEEEEecCCCCCCHHHHHHHHHHHHh---c-C-CEEEEEecCc-chhhcCC
Q 040758 686 YEWSSVLSLGEQQRLAFARL----LLSKPQIVLLDESTSALDEANEAHLYEQIEA---A-G-ITYISVGHRR-TLYDFHK 755 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARA----Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~-g-~TvI~IaHr~-~~~~~~D 755 (788)
...+.+||||||||+.+|++ ++.+|+++|+||||++||+.+...+.+.+.+ . | .|+|+|||++ ....+||
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~ 200 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHE 200 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccC
Confidence 34567899999999887755 4589999999999999999999999988854 3 4 5799999996 4555665
Q ss_pred --EEEEEccCC
Q 040758 756 --RVLRISTVD 764 (788)
Q Consensus 756 --~Ilvl~~g~ 764 (788)
+|++|++|+
T Consensus 201 ~~~v~~l~~g~ 211 (213)
T cd03277 201 KMTVLCVYNGP 211 (213)
T ss_pred ceEEEEEecCc
Confidence 889999885
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-18 Score=183.31 Aligned_cols=177 Identities=26% Similarity=0.381 Sum_probs=129.4
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--------CCCCCceEEEeeccCcccccCCCccchhhhccccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--------WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNM 584 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--------~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~ 584 (788)
..+++|+||+|+||+.++|||+|||||||++++|+|. |.|++|.|.+--+
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n---------------------- 453 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN---------------------- 453 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc----------------------
Confidence 3689999999999999999999999999999999986 6799999986210
Q ss_pred ccchhcccccCcceEEEEcc--ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH
Q 040758 585 NGELTRSMNRNSRGVFFLPQ--RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD 662 (788)
Q Consensus 585 ~~~~~~~~~~~r~~i~~v~Q--~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 662 (788)
+. -+++|- ||.+=.-|+-|.+.-. ..+...
T Consensus 454 ------t~------~a~iPge~Ep~f~~~tilehl~s~------------------------------------tGD~~~ 485 (593)
T COG2401 454 ------TV------SALIPGEYEPEFGEVTILEHLRSK------------------------------------TGDLNA 485 (593)
T ss_pred ------ch------hhccCcccccccCchhHHHHHhhc------------------------------------cCchhH
Confidence 00 122332 2222222555544211 112233
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hcC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAG 738 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~g 738 (788)
..+.|..+|+.+..-. -...+.||-|||-|..||+++...|.+++.||.-|.||+.|...+...+. +.|
T Consensus 486 AveILnraGlsDAvly-------Rr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~g 558 (593)
T COG2401 486 AVEILNRAGLSDAVLY-------RRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAG 558 (593)
T ss_pred HHHHHHhhccchhhhh-------hccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhC
Confidence 4566777766532111 12245699999999999999999999999999999999999988876654 469
Q ss_pred CEEEEEecCcchhhc--CCEEEEEccCCCC
Q 040758 739 ITYISVGHRRTLYDF--HKRVLRISTVDQN 766 (788)
Q Consensus 739 ~TvI~IaHr~~~~~~--~D~Ilvl~~g~~~ 766 (788)
.|+++||||.++.+- -|+++.+.-|...
T Consensus 559 iTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 559 ITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred CeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 999999999998753 6999888776543
|
|
| >PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-15 Score=151.89 Aligned_cols=262 Identities=16% Similarity=0.127 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 159 AVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYL 238 (788)
Q Consensus 159 ~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~L 238 (788)
+.+++.++...+.+..|++.+.++|.+..++.........+.++++++.. .......... .+ .......+...+
T Consensus 3 l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~-~~~~~~~~~~~l 76 (275)
T PF00664_consen 3 LAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNSSLISLAFLLIAIFL-LIFLFSYIYF----YL-SSRISQRIRKDL 76 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHHHHHHHHHHHHHHHH-HHHHHHHHHH----HH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHH-HHHHHHHHHH----HH-HHHHHHHHHHHH
Confidence 34455566667777899999999998765543211111111111111111 1111111100 11 111122345667
Q ss_pred hhhhHHHHhcCCCC--C-Cc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 040758 239 KDQTFYKIQSQSII--D-NP----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTA 311 (788)
Q Consensus 239 r~~~f~~l~~~~~~--~-~~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~ 311 (788)
|.++|+|+.+.+.. + ++ .+|+++|++.+.+........++..+..++..+++++.++|++++++++..++..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~ 156 (275)
T PF00664_consen 77 RKRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFL 156 (275)
T ss_dssp HHHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHh
Confidence 77777777766542 2 11 37999999999988777777777778877777788889999999999988888999
Q ss_pred HHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040758 312 ISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRY 391 (788)
Q Consensus 312 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (788)
+..++.++..+..++.+++.++..+.+.|..+|+++||+|+.|+.+.+++.+..++..+...+.................
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (275)
T PF00664_consen 157 ISFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISY 236 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888999999999999999999999999988766555554444433332222222233333333
Q ss_pred HHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHH
Q 040758 392 LIQILPAAVVAPM-YFSGKIEFGVINQSVSAFNHIL 426 (788)
Q Consensus 392 ~~~~~~~~~~~~l-~~~G~it~G~l~~~~~~~~~~~ 426 (788)
+..++.+.+++++ +..|.+|+|.+..+..++..+.
T Consensus 237 ~~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~ 272 (275)
T PF00664_consen 237 LSIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLI 272 (275)
T ss_dssp HHHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 3344445556777 8899999999876665544443
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-18 Score=167.99 Aligned_cols=71 Identities=28% Similarity=0.365 Sum_probs=65.2
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 692 LSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 692 LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
||+||+||+++||+|.. +|+++|||||++++|+.....+.+.+.+ .+.|+|++||+.++...+|+++.|+.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999999999987 7899999999999999999988887754 36899999999999889999999976
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.7e-18 Score=173.92 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=66.0
Q ss_pred CCCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHHHHHHHH-HHHHh-cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 690 SVLSLGEQQRLAFARLL--LSKPQIVLLDES---TSALDEANEAHLY-EQIEA-AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 690 ~~LSGGQrQRiaIARAL--l~~p~iLiLDEp---TSaLD~~se~~i~-~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
..+|.|++|+..+++++ +.+|+++||||| |++||+....... +.+.+ .|.|+|++||..++.+.||++..+++
T Consensus 88 ~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~~~~i~~ 167 (222)
T cd03285 88 KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADEVPNVKN 167 (222)
T ss_pred cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhcCCCeEE
Confidence 34999999999999999 999999999999 9999999886544 66654 58999999998778889999998888
Q ss_pred CCC
Q 040758 763 VDQ 765 (788)
Q Consensus 763 g~~ 765 (788)
|..
T Consensus 168 g~~ 170 (222)
T cd03285 168 LHV 170 (222)
T ss_pred EEE
Confidence 764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-17 Score=179.33 Aligned_cols=90 Identities=29% Similarity=0.310 Sum_probs=71.1
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.+..+.++++..++ ....+|||||-||+|||-|+++++++.++|||||-||....-..-+.+++ .++
T Consensus 194 ~devve~l~L~nvl~---------r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k 264 (591)
T COG1245 194 FDEVVERLGLENVLD---------RDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGK 264 (591)
T ss_pred HHHHHHHhcchhhhh---------hhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCC
Confidence 334455555554433 34677999999999999999999999999999999999988666555543 589
Q ss_pred EEEEEecCcchhhc-CCEEEEEc
Q 040758 740 TYISVGHRRTLYDF-HKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~~~-~D~Ilvl~ 761 (788)
+||+|-|++.++.+ +|-|-++-
T Consensus 265 ~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 265 YVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred eEEEEechHHHHHHhhheeEEEe
Confidence 99999999998875 78776663
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-17 Score=175.88 Aligned_cols=212 Identities=19% Similarity=0.246 Sum_probs=134.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL---WSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl---~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.|.++|.+.+-. ++.++.|-||.|-.|.++++|||||-|||||++-|+.- ++|.
T Consensus 264 DIKiEnF~ISA~--Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn--------------------- 320 (807)
T KOG0066|consen 264 DIKIENFDISAQ--GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN--------------------- 320 (807)
T ss_pred cceeeeeeeecc--cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC---------------------
Confidence 488888888874 56788999999999999999999999999999998742 1111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccc--hhhhhhhhh--
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPF--LTSAQKLEN-- 650 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~--i~~~~~~~~-- 650 (788)
-.+-++-|+..--+.|--+.+.-.+.. ....+.++++..+-++- .+..+.+..
T Consensus 321 ----------------------IDvLlCEQEvvad~t~Ai~tvl~aD~k-Rl~lLeee~~L~~q~e~Gd~taaErl~~v~ 377 (807)
T KOG0066|consen 321 ----------------------IDVLLCEQEVVADSTSAIDTVLKADKK-RLALLEEEAKLMSQIEEGDTTAAERLKEVA 377 (807)
T ss_pred ----------------------CceEeeeeeeeecCcHHHHHHHHhhHH-HHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 114556666544333333333211100 01111111111110000 000000000
Q ss_pred --hccCCCCCChHHHHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 651 --VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 651 --~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
+..-+.........++|.-+ |++.. . .....+|||-|-||++||||+-+|-+|.|||||++||...
T Consensus 378 ~ELraiGA~sAEarARRILAGL----------GFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA 447 (807)
T KOG0066|consen 378 DELRAIGADSAEARARRILAGL----------GFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA 447 (807)
T ss_pred HHHHHhccccchhHHHHHHhhc----------CCChhHhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence 00001111112233333322 33332 2 3356799999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 727 EAHLYEQIEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 727 e~~i~~~L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.-++-+.|..-.+|.++|+|+-.++ ..|..|+.|++-++
T Consensus 448 VIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 448 VIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred eeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 8888888887889999999998877 46999999987554
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.5e-17 Score=166.65 Aligned_cols=74 Identities=18% Similarity=0.156 Sum_probs=58.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+.+|++++| +..+.+++.+|+++||||||+++|+.....+.. .+.+.+.++|++||+.+..+.++++..++.+.
T Consensus 90 s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 90 STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLH 167 (202)
T ss_pred eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEE
Confidence 457777776 666678889999999999999999987766543 33346899999999999988888877776654
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=144.71 Aligned_cols=274 Identities=24% Similarity=0.406 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 164 TFATTGISVGFNFLGRDFYNALADK-------DQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMER 236 (788)
Q Consensus 164 ~~~~~~l~~~~~~l~~~iid~l~~~-------~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~ 236 (788)
+.....+++...-+.+.++|.+... +.++++...+.++.+.++.+.+.++..++......|||..++.+++.+
T Consensus 19 ~~~~v~v~V~iN~W~~~Fyd~iQ~al~~~~~~t~~ef~~~~~~f~~ia~~~v~~~v~~~ff~shyiFrWR~Am~~yY~~~ 98 (315)
T PF05992_consen 19 TWFQVQVSVAINEWYGPFYDLIQKALSKPGSVTIDEFYAQILNFLWIAMIYVVLAVLNSFFVSHYIFRWRTAMNEYYMSH 98 (315)
T ss_pred HHHHHheeeeehHhhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445667788888888866532 335666655555444444445556666776777789999999999987
Q ss_pred HhhhhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHH
Q 040758 237 YLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIY-------------PPLFVVLL 303 (788)
Q Consensus 237 ~Lr~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~-------------~~L~l~~l 303 (788)
| +...-.+-..||+.+|+..+...+..+...++..+++++.+..+|+.++ ..|..+++
T Consensus 99 W---------~~~r~IEGASQRIQEDtmrfa~i~E~Lgv~~i~simtliaFlPiL~~lS~~V~~lp~~g~i~~~Lv~~ai 169 (315)
T PF05992_consen 99 W---------PKLRHIEGASQRIQEDTMRFAKIMEDLGVSFIRSIMTLIAFLPILWELSSHVSELPFFGEIPHSLVWAAI 169 (315)
T ss_pred H---------HHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCcccCCCchHHHHHHH
Confidence 6 2232234446899999999999888889999999999999988887754 23677778
Q ss_pred HHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 040758 304 VYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE 383 (788)
Q Consensus 304 l~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (788)
++.++++++....+.|+..+..+.|+.|+.++..++-..++.. . .+. ..+.+.|.+..+++.+........+
T Consensus 170 ~~s~~gt~~l~~vGikLPgLe~~nQkvEAAyRKeLV~gED~~~----r-a~~---~tl~eLF~~Vr~Ny~rly~hy~yfn 241 (315)
T PF05992_consen 170 IWSLFGTILLAFVGIKLPGLEFNNQKVEAAYRKELVYGEDDAN----R-AQP---PTLRELFSNVRRNYFRLYFHYMYFN 241 (315)
T ss_pred HHHHHHHHHHHHHhccCcchhhhhHHHHHHHHHHHHhcCcccc----c-CCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999987654444421 1 111 2244677777777777666555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 040758 384 FFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDD 454 (788)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~ 454 (788)
.....+..+..+.+.++.++-++.|.+|+|.+.+...+|.++.+.+..++..+..+.+..+...|+.+++.
T Consensus 242 i~~~~y~q~~~i~~~i~l~Psi~ag~iTLG~~~Qi~~aF~~V~~sfq~lv~~W~tivEL~Si~kRL~~FE~ 312 (315)
T PF05992_consen 242 IARISYLQFDVIFPYIILIPSIVAGAITLGVLQQISNAFGQVRSSFQYLVNSWTTIVELRSIYKRLRAFEA 312 (315)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 66666677777788888899999999999999999999999999999999999999999999999988754
|
meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-16 Score=192.68 Aligned_cols=197 Identities=26% Similarity=0.346 Sum_probs=150.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeeccCcccccCCCccchhhhcccccccch
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 588 (788)
...+|+|+|.-++||+.+.+.||.|||||||++.|+|-.+-. .|+|.+||.+..+..
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~-------------------- 186 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFV-------------------- 186 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccc--------------------
Confidence 456899999999999999999999999999999999987642 569999765543331
Q ss_pred hcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChH-----H
Q 040758 589 TRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTD-----D 662 (788)
Q Consensus 589 ~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~-----~ 662 (788)
. ++.++|.+|....+. .|++|-+.|...... .+.+....++. -
T Consensus 187 -----~-~~~~aY~~e~DvH~p~lTVreTldFa~rck~-------------------------~~~r~~~~~R~e~~~~~ 235 (1391)
T KOG0065|consen 187 -----P-KKTVAYNSEQDVHFPELTVRETLDFAARCKG-------------------------PGSRYDEVSRREKLAAM 235 (1391)
T ss_pred -----c-CceEEeccccccccceeEEeehhhHHHhccC-------------------------CccccccccHHHHHHHH
Confidence 1 466999999877764 599998877321110 11111111112 2
Q ss_pred HHHHHHhcccccccccCCCcccc-c-cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh----
Q 040758 663 LIKALEDVKLGYILPRLNSLDTT-Y-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---- 736 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~-~-e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---- 736 (788)
....++.+|+++ ..||. | +.....|||||.||.+|-+++.+|+++.+||+|.|||..|.-++.+.|++
T Consensus 236 ~d~~lkilGL~~------~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~ 309 (1391)
T KOG0065|consen 236 TDYLLKILGLDH------CADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHI 309 (1391)
T ss_pred HHHHHHHhCchh------hccceecccccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhh
Confidence 335677777774 45664 4 45567999999999999999999999999999999999999999999875
Q ss_pred cCCEEEEEecCc--chhhcCCEEEEEccCCC
Q 040758 737 AGITYISVGHRR--TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ~g~TvI~IaHr~--~~~~~~D~Ilvl~~g~~ 765 (788)
.+.|.++.=|.. ++....|.|++|.+|.+
T Consensus 310 ~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~ 340 (1391)
T KOG0065|consen 310 TGATALVSILQPSPEIYDLFDDVILLSEGYQ 340 (1391)
T ss_pred hcceEEEEeccCChHHHHhhhheeeeeccce
Confidence 488888888874 56788899999999965
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.1e-16 Score=178.17 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=72.7
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCC
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D 755 (788)
|-+.|....+|||||.|||-+|.-|.++. -+.||||||.+|-.+-.+++++.|.+ .|-|||+|-|.+++++.||
T Consensus 813 Yi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 813 YIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred eEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceEeecC
Confidence 33457778899999999999999999988 99999999999999999888887764 7999999999999999999
Q ss_pred EEEEEcc
Q 040758 756 RVLRIST 762 (788)
Q Consensus 756 ~Ilvl~~ 762 (788)
+|+-|-.
T Consensus 893 ~IIDLGP 899 (935)
T COG0178 893 WIIDLGP 899 (935)
T ss_pred EEEEcCC
Confidence 9998853
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=192.25 Aligned_cols=83 Identities=24% Similarity=0.325 Sum_probs=74.2
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcC
Q 040758 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFH 754 (788)
Q Consensus 681 g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~ 754 (788)
||-+.+....+|||||.|||-||.-|.++ +.++||||||.+|++...+.+.+.|++ .|.|+|+|.|++++++.|
T Consensus 1689 gYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~~i~~a 1768 (1809)
T PRK00635 1689 GYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHDPALLKQA 1768 (1809)
T ss_pred CeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhC
Confidence 34445778889999999999999999876 789999999999999999999888654 799999999999999999
Q ss_pred CEEEEEccC
Q 040758 755 KRVLRISTV 763 (788)
Q Consensus 755 D~Ilvl~~g 763 (788)
|+|+.|..|
T Consensus 1769 D~iidlgp~ 1777 (1809)
T PRK00635 1769 DYLIEMGPG 1777 (1809)
T ss_pred CEEEEcCCC
Confidence 999999754
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=161.40 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=63.7
Q ss_pred CCCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcC---CE
Q 040758 689 SSVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFH---KR 756 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~---D~ 756 (788)
...+|+||||+++|||+|+ .+|++++|||||++||+.....+.+.+.+.+.++|+++|+..+..+| ++
T Consensus 181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~q~ii~~~~~~~~~~~~~~~~~ 260 (270)
T cd03242 181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRVQTFVTTTDLADFDALWLRRAQ 260 (270)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCCCEEEEeCCchhccchhccCcc
Confidence 4458999999999999984 79999999999999999999999999987665555555555655666 78
Q ss_pred EEEEccCC
Q 040758 757 VLRISTVD 764 (788)
Q Consensus 757 Ilvl~~g~ 764 (788)
++.+++|+
T Consensus 261 i~~l~~g~ 268 (270)
T cd03242 261 IFRVDAGT 268 (270)
T ss_pred EEEEeCcE
Confidence 99999875
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.4e-15 Score=159.89 Aligned_cols=84 Identities=13% Similarity=0.188 Sum_probs=73.5
Q ss_pred CCcccc-ccCCCCCChhH--------HHHHHHHHHHccCCCEEEEecCCCCCCHHHHH--HHHHHHHhcCCEEEEEecCc
Q 040758 680 NSLDTT-YEWSSVLSLGE--------QQRLAFARLLLSKPQIVLLDESTSALDEANEA--HLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 680 ~g~~t~-~e~g~~LSGGQ--------rQRiaIARALl~~p~iLiLDEpTSaLD~~se~--~i~~~L~~~g~TvI~IaHr~ 748 (788)
+++++. ++.|..+|||| +||+++||+++++++|.+| ||+.+|+.++. -+.+.++..+.|.|+++||+
T Consensus 117 ~a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~l 194 (249)
T cd01128 117 RAYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVIFEEFKGTGNMELVLDRRL 194 (249)
T ss_pred hhhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchHHHHHhcCCCcEEEEchHH
Confidence 567776 68889999999 9999999999999999999 99999976665 34555665789999999999
Q ss_pred chhhcCCEEEEEccCCC
Q 040758 749 TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~~ 765 (788)
....++|.|.||+.|..
T Consensus 195 a~~~~~paI~vl~s~sr 211 (249)
T cd01128 195 AERRIFPAIDILKSGTR 211 (249)
T ss_pred hhCCCCCeEEEcCCCCc
Confidence 99999999999999865
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.8e-16 Score=156.72 Aligned_cols=136 Identities=17% Similarity=0.122 Sum_probs=87.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++++|++|+. |++++|+||||||||||+|+|++..-. .. .|.++.
T Consensus 13 ~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l-----~~---~G~~v~----------------------- 59 (199)
T cd03283 13 EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVIL-----AQ---AGAPVC----------------------- 59 (199)
T ss_pred CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHH-----HH---cCCEEe-----------------------
Confidence 346778887775 799999999999999999999874321 11 111110
Q ss_pred cccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
. -.+++|...+| ..|+.||+..+..... ....++.++++.+
T Consensus 60 ----a--~~~~~q~~~l~~~~~~~d~l~~~~s~~~--------------------------------~e~~~~~~iL~~~ 101 (199)
T cd03283 60 ----A--SSFELPPVKIFTSIRVSDDLRDGISYFY--------------------------------AELRRLKEIVEKA 101 (199)
T ss_pred ----c--CccCcccceEEEeccchhccccccChHH--------------------------------HHHHHHHHHHHhc
Confidence 0 12455654455 4588888876531100 0012233333322
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEec
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGH 746 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaH 746 (788)
+ ..+|+++|+||||+++|+.....+.. .+.+.|.|+|++||
T Consensus 102 ~-----------------------------------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH 146 (199)
T cd03283 102 K-----------------------------------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTH 146 (199)
T ss_pred c-----------------------------------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 1 16999999999999999998765543 33446899999999
Q ss_pred Ccchhhc
Q 040758 747 RRTLYDF 753 (788)
Q Consensus 747 r~~~~~~ 753 (788)
+++.+..
T Consensus 147 ~~~~~~~ 153 (199)
T cd03283 147 DLELADL 153 (199)
T ss_pred cHHHHHh
Confidence 9876543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=148.74 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=50.1
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH----HHHHHHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~----i~~~L~~~g~TvI~IaHr~~~~~~ 753 (788)
.+++|+|++|+. .+-+++.+|+++|||||++++|+..... +.+.+.+.|.++|++||+.++.+.
T Consensus 89 ~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~ 156 (204)
T cd03282 89 LSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFRDIAAI 156 (204)
T ss_pred hhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 456999999764 5556789999999999999999976443 344455579999999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.9e-15 Score=151.62 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=49.2
Q ss_pred HHHHHH--ccCCCEEEEecC---CCCCCHHHH-HHHHHHHHhc-CCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 701 AFARLL--LSKPQIVLLDES---TSALDEANE-AHLYEQIEAA-GITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 701 aIARAL--l~~p~iLiLDEp---TSaLD~~se-~~i~~~L~~~-g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.+++++ +.+|+++||||| |+++|.... ..+.+.|.+. +.|+|++||+.++.+.+|++..+++|.
T Consensus 99 ~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~~~~~v~~~~ 169 (216)
T cd03284 99 ETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEGKLPRVKNFH 169 (216)
T ss_pred HHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhhcCCCeEEEE
Confidence 455555 469999999999 999998763 5566777665 899999999988877777765555543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-14 Score=131.97 Aligned_cols=77 Identities=21% Similarity=0.182 Sum_probs=63.1
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+|++++|++++||.++|+||||||||||+++++ +|++.++|.|...+ +.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~-----------------------~~ 52 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEI-----------------------RE 52 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHh-----------------------hh
Confidence 46899999999999999999999999999999987 89999965543322 11
Q ss_pred ccCcceEEEEccccccCCCCHHHHhcCC
Q 040758 593 NRNSRGVFFLPQRPYMVLGSLRQQLIYP 620 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~ 620 (788)
+..++.++++||+ +|.+||+|||.++
T Consensus 53 ~~~~~~~~~~~q~--lf~~ti~~Ni~~~ 78 (107)
T cd00820 53 DSKDELIGRNPEL--GLEIRLRLNIFLI 78 (107)
T ss_pred hhcCCEEEEechh--cchhhHHhhceee
Confidence 2334557888888 9999999999984
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-14 Score=172.16 Aligned_cols=75 Identities=27% Similarity=0.304 Sum_probs=69.1
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||+|||+|||||..+| +++||||||++||+.....+.+.|++ .|.|||+|+|+++.+..||+|++|
T Consensus 482 ~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~aD~vi~L 561 (924)
T TIGR00630 482 SRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRAADYVIDI 561 (924)
T ss_pred CCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCEEEEe
Confidence 4457789999999999999999986 89999999999999999999888764 699999999999988899999999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.4e-14 Score=172.00 Aligned_cols=75 Identities=27% Similarity=0.315 Sum_probs=68.8
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||||||+|||||..+| +++||||||++||+.....+.+.|++ .|.|||+|+|+++.+..||+|++|
T Consensus 484 ~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~~aD~vi~L 563 (943)
T PRK00349 484 SRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIRAADYIVDI 563 (943)
T ss_pred CCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 3456789999999999999999997 99999999999999999999888764 699999999999888889999999
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-13 Score=145.53 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=34.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+.++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~ 148 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKK 148 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEE
Confidence 6899999999999999999999999999999996443
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >COG1133 SbmA ABC-type long-chain fatty acid transport system, fused permease and ATPase components [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-10 Score=116.37 Aligned_cols=275 Identities=25% Similarity=0.408 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHHHHHHHHh----hcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040758 167 TTGISVGFNFLGRDFYNAL----ADKD---QEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLK 239 (788)
Q Consensus 167 ~~~l~~~~~~l~~~iid~l----~~~~---~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr 239 (788)
..-+++....+.+.+.|-+ ..+. ..+|......+..+.++++...++..++...-.-|||..++.+++.+|
T Consensus 100 ~vqvsvain~wy~pf~d~~q~als~~~~~t~~~fY~~~~vF~~IA~~~v~i~vln~ffvShyiFrWRtAMn~~ym~~W-- 177 (405)
T COG1133 100 LVQVSVAVNAWYGPFYDLIQNALSSPPKVTAGQFYSLVGVFLGIALIAVVISVLNNFFVSHYIFRWRTAMNEYYMANW-- 177 (405)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHhh--
Confidence 3345666677777777743 3322 245655555555555555555666666666666799999999988876
Q ss_pred hhhHHHHhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------------hhHHHHHHHHH
Q 040758 240 DQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIY-------------PPLFVVLLVYS 306 (788)
Q Consensus 240 ~~~f~~l~~~~~~~~~~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~-------------~~L~l~~ll~~ 306 (788)
+++.-.+-..||+.+|..++...+..+..+++..+++++.+..+|+.++ -.|.++.+++.
T Consensus 178 -------~klrhIEGasQRvQEDTmrFSstlE~LGvsfi~siMTLiaFlPvL~~ls~~Vs~Lpiig~ip~~Lv~aAi~ws 250 (405)
T COG1133 178 -------QKLRHIEGASQRVQEDTMRFSSTLENLGVSFINAIMTLIAFLPVLFTLSAHVSELPIIGHIPHALVWAAIVWS 250 (405)
T ss_pred -------hhhccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCchHHHHHHHHHH
Confidence 3333344446899999999999888888999999999999988887754 34677788888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
+.++.+....+-|+-.+..+.|+.|+.++..++-..++.+ ...-. ...+.|.....++.+...-..-.+...
T Consensus 251 lfGtv~la~vGIKLPGLef~NQrvEAAyRKELVYgEDh~d----rA~p~----T~~ELf~nvr~NYfRLyfHY~YFNiar 322 (405)
T COG1133 251 LFGTVLLAVVGIKLPGLEFRNQRVEAAYRKELVYGEDHAD----RATPP----TVRELFSNVRKNYFRLYFHYMYFNIAR 322 (405)
T ss_pred HhchHHHHhhhccCCCcccccHHHHHHHHhhhhccCCchh----hcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888988888888889999999876643333311 01111 112344444444444332222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhccc
Q 040758 387 SGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDS 458 (788)
Q Consensus 387 ~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~ 458 (788)
-.+-..-.+.++.+.++-...|++|+|.+.+...+|.++-+.+..++..+..+.+..+...|+.+++..++.
T Consensus 323 i~ylQ~dnif~llil~PsivAgkitlG~~~QI~n~FgqVr~SfqylinsWTTIveL~SIyKRLraFE~~i~~ 394 (405)
T COG1133 323 ILYLQVDNIFGLLILFPSIVAGKITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRLRAFEAALDG 394 (405)
T ss_pred HHHHHHHHHHHHHHHhhHHHhchhhHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 223334445566677788899999999999999999999999999999998888899999999988766554
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.4e-13 Score=144.87 Aligned_cols=178 Identities=26% Similarity=0.337 Sum_probs=124.5
Q ss_pred EEcCCCCccceeeeeEEEeCCC-----EEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccCcccccCCCccchhhh
Q 040758 506 LKTPTSKATLVRDLSLVINEKE-----HLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDREETDAHTSDVDSLEV 579 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i~~Ge-----~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~~~i~~~~~~~~~~~~ 579 (788)
++||+ .+..+.+..|.|+.|+ ++..+|+||-||||++++++|..+|++| +|-.
T Consensus 343 y~Yp~-m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~-------------------- 401 (592)
T KOG0063|consen 343 YSYPK-MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV-------------------- 401 (592)
T ss_pred eccCc-ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc--------------------
Confidence 67885 5567899999999985 6889999999999999999999999876 2211
Q ss_pred cccccccchhcccccCcceEEEEccccc-cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 580 NSQNMNGELTRSMNRNSRGVFFLPQRPY-MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 580 ~~~~~~~~~~~~~~~~r~~i~~v~Q~~~-lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
-+++|=||... -+.+|+|+-+. +..+.+..|+..
T Consensus 402 -----------------lnVSykpqkispK~~~tvR~ll~------------~kIr~ay~~pqF---------------- 436 (592)
T KOG0063|consen 402 -----------------LNVSYKPQKISPKREGTVRQLLH------------TKIRDAYMHPQF---------------- 436 (592)
T ss_pred -----------------cceeccccccCccccchHHHHHH------------HHhHhhhcCHHH----------------
Confidence 12667777542 34567765442 111122222211
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH----HHH
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY----EQI 734 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~----~~L 734 (788)
+-+.++-+.++++. +....+|||||.||+|+|-+|=+.+++.+.|||.+-||.+.+...- +.+
T Consensus 437 ----~~dvmkpL~ie~i~---------dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfi 503 (592)
T KOG0063|consen 437 ----VNDVMKPLQIENII---------DQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFI 503 (592)
T ss_pred ----HHhhhhhhhHHHHH---------hHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHH
Confidence 11223333333222 2234569999999999999999999999999999999998875433 334
Q ss_pred HhcCCEEEEEecCcchhh-cCCEEEEEcc
Q 040758 735 EAAGITYISVGHRRTLYD-FHKRVLRIST 762 (788)
Q Consensus 735 ~~~g~TvI~IaHr~~~~~-~~D~Ilvl~~ 762 (788)
-..++|-.++.|+.-... .+||++|.+.
T Consensus 504 lhakktafvVEhdfImaTYladrvivf~G 532 (592)
T KOG0063|consen 504 LHAKKTAFVVEHDFIMATYLADRVIVFEG 532 (592)
T ss_pred HhccchhhhhhhHHHHHHhhcceeEEEec
Confidence 457899999999964443 4899999874
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=144.29 Aligned_cols=76 Identities=24% Similarity=0.330 Sum_probs=64.8
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh-hc--CCEE
Q 040758 690 SVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY-DF--HKRV 757 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~-~~--~D~I 757 (788)
..+|.||+|+++||++|. .+||+|+||||+|+||+.....+.+.+.+.+.++++++|+...+ .. .+++
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~~~qv~it~~~~~~~~~~~~~~~i 351 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGLGAQVFITTTDLEDLADLLENAKI 351 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhccCCEEEEEcCChhhhhhhhccCcE
Confidence 579999999999999885 79999999999999999999999999876567889999986543 22 4589
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
+.|++|+.
T Consensus 352 ~~v~~G~i 359 (361)
T PRK00064 352 FHVEQGKI 359 (361)
T ss_pred EEEeCCEE
Confidence 99998854
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.3e-12 Score=131.36 Aligned_cols=72 Identities=26% Similarity=0.436 Sum_probs=57.5
Q ss_pred CCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 691 VLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 691 ~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.||||||-+++||--| +.++|++||||+.++||......+.+.|++ .+.-+|++||+..+...||+.+.+..
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v~~ 213 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGVTM 213 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999998544 468999999999999999999999999987 35889999999999999999988754
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.2e-13 Score=168.89 Aligned_cols=133 Identities=17% Similarity=0.211 Sum_probs=93.9
Q ss_pred cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccccc
Q 040758 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYE 687 (788)
Q Consensus 608 lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e 687 (788)
.|+||++|||.+ .++.+.+ ..+++.++.+.|+.. .+.| ++...
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~---------------------------------~~~~-~~~~~ 1195 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVV---------------------------------MLKG-DTALD 1195 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhc---------------------------------cCCC-CeecC
Confidence 478999999999 5443322 344444444333221 2245 56544
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--------cCCEEEEEecCcchhh-
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--------AGITYISVGHRRTLYD- 752 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--------~g~TvI~IaHr~~~~~- 752 (788)
....||||||| |++|||||+.+|++|+|||||++||+.+...+.+.|.. .|.|+|+|||++..+.
T Consensus 1196 ~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~ 1275 (1311)
T TIGR00606 1196 MRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVEL 1275 (1311)
T ss_pred CCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHH
Confidence 44589999999 99999999999999999999999999999988876642 3789999999987542
Q ss_pred -----cCCEEEEEccCCCCCCCCCeEEEecCccc
Q 040758 753 -----FHKRVLRISTVDQNSSQSNWKLEFIDQES 781 (788)
Q Consensus 753 -----~~D~Ilvl~~g~~~~~~~~~~~~~~~~~~ 781 (788)
+||+.+.+.. +..+.=.++..+|+.
T Consensus 1276 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 1305 (1311)
T TIGR00606 1276 LGRSEYVEKFYRLKK----NEDQCSEIVKCSPSS 1305 (1311)
T ss_pred Hhhccccceeeeeee----ccccCceeEeeCCcc
Confidence 4678787765 233334444445543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.39 E-value=3e-13 Score=136.53 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=49.8
Q ss_pred CCCCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCCHHHHHHHHH----HHHh-cCCEEEEEecCcchhhcCCE
Q 040758 689 SSVLSLGEQQRLAFARLLLS--KPQIVLLDESTSALDEANEAHLYE----QIEA-AGITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~--~p~iLiLDEpTSaLD~~se~~i~~----~L~~-~g~TvI~IaHr~~~~~~~D~ 756 (788)
.++||+|++| +++++.. +|+++|+||||+++|+.....+.. .+.+ .+.++|++||..++.+.+|+
T Consensus 59 ~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 59 LSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 4568888887 4555555 999999999999999997766543 3334 38899999999987777764
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=132.16 Aligned_cols=60 Identities=22% Similarity=0.226 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH----HHHHHhc---CCEEEEEecCcchhhc
Q 040758 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL----YEQIEAA---GITYISVGHRRTLYDF 753 (788)
Q Consensus 694 GGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i----~~~L~~~---g~TvI~IaHr~~~~~~ 753 (788)
.-+-||+++|++++.+|+++|||||++++|+.....+ .+.+.+. +.++|++||..++.+.
T Consensus 93 ~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 93 MIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNR 159 (213)
T ss_pred HHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHh
Confidence 3467999999999999999999999999998654333 3333333 3589999999887654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-13 Score=159.59 Aligned_cols=64 Identities=17% Similarity=0.118 Sum_probs=53.2
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH----HHHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE----QIEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~----~L~~~g~TvI~IaHr~~~~~~ 753 (788)
.++||+|++|+..|++++ .+|+++|||||++++|+..-..+.. .+.+.|.++|++||..++..+
T Consensus 383 LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~ 450 (771)
T TIGR01069 383 LSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKAL 450 (771)
T ss_pred hhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHH
Confidence 356999999999999887 7899999999999999999887743 333468999999999776443
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.7e-12 Score=150.00 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=67.7
Q ss_pred CCCChhHHHHHHHHHHHc----------cCCCEEEEecCC-CCCCHHHHHHHHHHHHh-cCCEEEEEecCcchhhcCCEE
Q 040758 690 SVLSLGEQQRLAFARLLL----------SKPQIVLLDEST-SALDEANEAHLYEQIEA-AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl----------~~p~iLiLDEpT-SaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~~~~~D~I 757 (788)
..||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.+ .|.|+|+|||+......||++
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~~~~~iiiish~~~~~~~~d~~ 546 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSLKDTNVFVISHKDHDPQKFDRH 546 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhCCCCeEEEEECchhchhhhhcE
Confidence 679999999999999987 599999999998 78999999999998877 688999999998888889999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|++
T Consensus 547 ~~l~~ 551 (562)
T PHA02562 547 LKMEK 551 (562)
T ss_pred EEEEE
Confidence 99987
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-11 Score=145.35 Aligned_cols=90 Identities=12% Similarity=0.173 Sum_probs=74.6
Q ss_pred CCCChhHHHHHHHHHHHccC----CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 690 SVLSLGEQQRLAFARLLLSK----PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~----p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
..|||||+||++|||+++.. |++|||||||++||+.+...+.+.|++ .++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 45999999999999999985 699999999999999999999998875 589999999999988899999999987
Q ss_pred CCCCCCCCeEEEecCcc
Q 040758 764 DQNSSQSNWKLEFIDQE 780 (788)
Q Consensus 764 ~~~~~~~~~~~~~~~~~ 780 (788)
.. ++..-=++..++.+
T Consensus 519 ~~-~~~t~s~i~~L~~~ 534 (563)
T TIGR00634 519 GL-DGRTATRVRPLSGE 534 (563)
T ss_pred cC-CCcEEEEEEECCcc
Confidence 42 11122445555543
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.2e-12 Score=126.09 Aligned_cols=89 Identities=16% Similarity=0.125 Sum_probs=69.8
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
...+||+++-++.+++..+.+|+++++|| |+..+|....+.+.+.+ +.++++|+++|+.....++|+|..+.+|..
T Consensus 76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~~~~~~~i~~~~~~~i- 153 (174)
T PRK13695 76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL-DSEKPVIATLHRRSVHPFVQEIKSRPGGRV- 153 (174)
T ss_pred EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH-hCCCeEEEEECchhhHHHHHHHhccCCcEE-
Confidence 34599999999999999999999999999 66677766666666666 678999999999777788999999988754
Q ss_pred CCCCCeEEEecCcccccc
Q 040758 767 SSQSNWKLEFIDQESLYN 784 (788)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~ 784 (788)
..+..-+-|+|||
T Consensus 154 -----~~~~~~~r~~~~~ 166 (174)
T PRK13695 154 -----YELTPENRDSLPF 166 (174)
T ss_pred -----EEEcchhhhhHHH
Confidence 3344444455554
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.3e-11 Score=126.12 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=43.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEE
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~ 559 (788)
++.+.+|++|.+++|++++|+||||+||||+++.+++ .+.++.|....
T Consensus 17 ~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~ 65 (222)
T cd03287 17 KSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP 65 (222)
T ss_pred CCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 3568899999999999999999999999999999999 77888887764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.5e-11 Score=140.60 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=68.5
Q ss_pred CCChhHHHHHHHHHHHcc----CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLS----KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~----~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
.|||||+|||+|||+++. +|+++||||||++||..+...+.+.|++ .+.|+|+|||++.+..+||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 499999999999999996 6899999999999999999999998875 5799999999999999999999999863
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.9e-11 Score=126.09 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHccCCCEEEEecCC-----CCCCHHHHHHHHHHHHh
Q 040758 696 EQQRLAFARLLLSKPQIVLLDEST-----SALDEANEAHLYEQIEA 736 (788)
Q Consensus 696 QrQRiaIARALl~~p~iLiLDEpT-----SaLD~~se~~i~~~L~~ 736 (788)
|++++.|||+++.+|++++||||| ++||+.+.+.+.+.+.+
T Consensus 157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~ 202 (215)
T PTZ00132 157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA 202 (215)
T ss_pred HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999999998875
|
|
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.7e-11 Score=127.80 Aligned_cols=186 Identities=22% Similarity=0.224 Sum_probs=113.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
+||+..++||.||-||||-++.++|-.+|.-|.--- +-+.+++ +...| |-=-
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~-pp~w~~i------------------------l~~fr---gsel 149 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN-PPDWQEI------------------------LTYFR---GSEL 149 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC-CcchHHH------------------------hhhhh---hHHH
Confidence 589999999999999999999999999998875421 0011110 00000 0001
Q ss_pred cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 604 QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
|+ .|..-+.+|+.-......+..+-+++|.+- .. .+..+... ....++.+...++...+
T Consensus 150 q~--yftk~le~~lk~~~kpQyvd~ipr~~k~~v-------~~---~l~~~~~r---~~~~~~~~~~~L~~~~~------ 208 (592)
T KOG0063|consen 150 QN--YFTKILEDNLKAIIKPQYVDQIPRAVKGTV-------GS---LLDRKDER---DNKEEVCDQLDLNNLLD------ 208 (592)
T ss_pred hh--hhhhhccccccCcCChHHHHHHHHHHHHHH-------HH---HHHHHhhc---ccHHHHHHHHHHhhHHH------
Confidence 11 122223444433222222333333333210 00 01111111 12334444444443332
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhc-CCEEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDF-HKRVLR 759 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~-~D~Ilv 759 (788)
.....|||||-||.|||.+.++++++.++|||.|-||.+....--..++ ..++=+|+|-|+++++.+ .|-|..
T Consensus 209 ---re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCc 285 (592)
T KOG0063|consen 209 ---REVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICC 285 (592)
T ss_pred ---hhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeE
Confidence 2345699999999999999999999999999999999998865544444 468899999999998875 677766
Q ss_pred Ec
Q 040758 760 IS 761 (788)
Q Consensus 760 l~ 761 (788)
+-
T Consensus 286 LY 287 (592)
T KOG0063|consen 286 LY 287 (592)
T ss_pred Ee
Confidence 64
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=125.85 Aligned_cols=55 Identities=20% Similarity=0.268 Sum_probs=50.6
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.|.++.++
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev 199 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREV 199 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccH
Confidence 45689999 99999999999999999999999999999999999999987777655
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=9.4e-10 Score=114.98 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=48.5
Q ss_pred CChhHHHHHHHHHHHcc----CCCEEEEecCCCCC----CHHHHHHHHHHHH---hcCCEEEEEecCcch-------h-h
Q 040758 692 LSLGEQQRLAFARLLLS----KPQIVLLDESTSAL----DEANEAHLYEQIE---AAGITYISVGHRRTL-------Y-D 752 (788)
Q Consensus 692 LSGGQrQRiaIARALl~----~p~iLiLDEpTSaL----D~~se~~i~~~L~---~~g~TvI~IaHr~~~-------~-~ 752 (788)
+|+++.++-.+++.+-. +|+++++||||+.+ |+...+.+.+.++ +.|.|+++++|.... . -
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~ 175 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPKELDESVLTILRT 175 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEecccccccccceeEEE
Confidence 67777666555554443 69999999999999 7776677777665 457777665553221 1 2
Q ss_pred cCCEEEEEcc
Q 040758 753 FHKRVLRIST 762 (788)
Q Consensus 753 ~~D~Ilvl~~ 762 (788)
.||-|+.|+.
T Consensus 176 ~~DgvI~L~~ 185 (230)
T PRK08533 176 AATMLIRLEV 185 (230)
T ss_pred eeeEEEEEEE
Confidence 3788888874
|
|
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.6e-10 Score=137.93 Aligned_cols=64 Identities=22% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH----HHhcCCEEEEEecCcchhhc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ----IEAAGITYISVGHRRTLYDF 753 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~----L~~~g~TvI~IaHr~~~~~~ 753 (788)
.+++|+|++|++.|++++ .+|+++|||||++++|+.....+... +.+.|.++|++||..++..+
T Consensus 388 lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~ 455 (782)
T PRK00409 388 LSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKAL 455 (782)
T ss_pred hhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHH
Confidence 456999999999999998 89999999999999999987766443 34468999999999887654
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.06 E-value=7.8e-10 Score=111.05 Aligned_cols=76 Identities=12% Similarity=0.093 Sum_probs=57.5
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCC---HHHHHHHHHHH---HhcCCEEEEEecCcc------
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALD---EANEAHLYEQI---EAAGITYISVGHRRT------ 749 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD---~~se~~i~~~L---~~~g~TvI~IaHr~~------ 749 (788)
....+|+||+| ....+.+.-.+|+++++||||+.+| ......+.+.+ ++.|.|+|+++|...
T Consensus 68 ~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~ 147 (187)
T cd01124 68 DPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGF 147 (187)
T ss_pred CccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCccc
Confidence 34568999999 4444444567999999999999999 66565555544 457999999999854
Q ss_pred ----hhhcCCEEEEEccC
Q 040758 750 ----LYDFHKRVLRISTV 763 (788)
Q Consensus 750 ----~~~~~D~Ilvl~~g 763 (788)
+...||.|+.|+.-
T Consensus 148 ~~~~~~~~aD~ii~l~~~ 165 (187)
T cd01124 148 GGGDVEYLVDGVIRLRLD 165 (187)
T ss_pred CcCceeEeeeEEEEEEEE
Confidence 34569999999853
|
A related protein is found in archaea. |
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.7e-10 Score=139.15 Aligned_cols=76 Identities=33% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEE
Q 040758 688 WSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 688 ~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Il 758 (788)
.+..|||||+| |+||||+++.+|+++||||||++||+.....+.+.|.. .+.|+|+|||+.++...||+++
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~ 864 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVI 864 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEE
Confidence 35679999999 56666789999999999999999999999999888754 4789999999998888999999
Q ss_pred EEccC
Q 040758 759 RISTV 763 (788)
Q Consensus 759 vl~~g 763 (788)
+|+.+
T Consensus 865 ~l~~~ 869 (880)
T PRK03918 865 RVSLE 869 (880)
T ss_pred EEEec
Confidence 99864
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-10 Score=140.41 Aligned_cols=76 Identities=21% Similarity=0.157 Sum_probs=68.2
Q ss_pred CCCCCChhHHHHHHHHHHHcc----------CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchh-hc
Q 040758 688 WSSVLSLGEQQRLAFARLLLS----------KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLY-DF 753 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl~----------~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~-~~ 753 (788)
...+|||||++|++||+||+. +|++|||||||++||+++...+.+.|.+ .|+||++|||..++. .+
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 457899999999999999985 7999999999999999999999888864 689999999998765 67
Q ss_pred CCEEEEEccC
Q 040758 754 HKRVLRISTV 763 (788)
Q Consensus 754 ~D~Ilvl~~g 763 (788)
+|+|.|+..+
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 9999999765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-10 Score=137.58 Aligned_cols=75 Identities=28% Similarity=0.407 Sum_probs=66.0
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH----hc-C-CEEEEEecCcchhhcCC
Q 040758 688 WSSVLSLGEQQRLAF------ARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AA-G-ITYISVGHRRTLYDFHK 755 (788)
Q Consensus 688 ~g~~LSGGQrQRiaI------ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~----~~-g-~TvI~IaHr~~~~~~~D 755 (788)
.+..||||||||++| ||+|+.+|++++|||||++||+.....+.+.+. .. + .|+|+|||+.++...||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999998887764 22 3 48999999999989999
Q ss_pred EEEEEcc
Q 040758 756 RVLRIST 762 (788)
Q Consensus 756 ~Ilvl~~ 762 (788)
+|+.+..
T Consensus 878 ~ii~~~~ 884 (895)
T PRK01156 878 VAYEVKK 884 (895)
T ss_pred eEEEEEe
Confidence 9999984
|
|
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.8e-09 Score=121.26 Aligned_cols=61 Identities=21% Similarity=0.245 Sum_probs=51.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.++-++++..|++ +..+++++ |++.+||+++|+|+||+|||||+++|+|..+|+.|.|.+.
T Consensus 130 ~~~r~~i~~~l~T-GiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~i 190 (432)
T PRK06793 130 AFEREEITDVFET-GIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLV 190 (432)
T ss_pred chheechhhccCC-CCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeC
Confidence 3666777777764 45688885 9999999999999999999999999999999998877653
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.5e-09 Score=118.32 Aligned_cols=41 Identities=29% Similarity=0.548 Sum_probs=38.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.+
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~i 177 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITI 177 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEE
Confidence 56789999999999999999999999999999999998877
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.9e-09 Score=137.36 Aligned_cols=76 Identities=22% Similarity=0.363 Sum_probs=67.2
Q ss_pred cCCCCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 687 EWSSVLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
..+..||||||||++|||++ +++|+++||||||++||+.+...+.+.|.. .+.|+|+|||+++....||+++.+
T Consensus 1085 ~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1085 QNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred ccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 34578999999999999998 477899999999999999999999988865 468999999999988899999876
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
..
T Consensus 1165 ~~ 1166 (1179)
T TIGR02168 1165 TM 1166 (1179)
T ss_pred ee
Confidence 53
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=104.73 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=34.6
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.+-+|++|++++|++++|.||||+||||+++.++..
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~ 53 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA 53 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence 35688999999999999999999999999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.87 E-value=5.9e-09 Score=106.49 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+++++|..+|+++++||+. |.++...+.+.. ..|.+++.++|..+.....||++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~~a-~~G~~v~~t~Ha~~~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALTAA-ETGHLVMSTLHTNSAAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHHHH-HcCCEEEEEecCCcHHHHHhHHHhhc
Confidence 4788999999999999996 666554444433 36899999999988777778887664
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=98.85 E-value=8.7e-10 Score=123.61 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=43.9
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDR 564 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~ 564 (788)
.+|+++|+++++||+++|+||||||||||++ .|+..|++| +|.++|.+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 5899999999999999999999999999999 788888888 799965543
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=9.6e-09 Score=128.85 Aligned_cols=76 Identities=20% Similarity=0.213 Sum_probs=64.6
Q ss_pred cCCCCCChhHHHHHHHHHHHcc--------CCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhh-cC
Q 040758 687 EWSSVLSLGEQQRLAFARLLLS--------KPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYD-FH 754 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl~--------~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~-~~ 754 (788)
....+|||||+|+++|||||.. +|++|||||||++||+.+...+.+.|.. .|+||++|||...+.. ..
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3467899999999999999995 8999999999999999999999888754 6999999999777654 45
Q ss_pred CEEEEEcc
Q 040758 755 KRVLRIST 762 (788)
Q Consensus 755 D~Ilvl~~ 762 (788)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 56666653
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-08 Score=108.12 Aligned_cols=58 Identities=26% Similarity=0.339 Sum_probs=52.2
Q ss_pred CCCcEEEeeeEEEcCCCCcccee-----------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVR-----------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~-----------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
..+.+.|+||+|.||+ ++.+|+ |+++.|.+||+++||||+|||||||+++|++.+...
T Consensus 127 ~~~ri~Fe~LTf~YP~-er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 127 AKNRVLFENLTPLYPN-ERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred cCCCeEEEEeeecCCC-ccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 4568999999999996 557897 999999999999999999999999999999987643
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.3e-09 Score=131.12 Aligned_cols=75 Identities=19% Similarity=0.281 Sum_probs=67.7
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 689 SSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
...||||||++++||++|+ .+||++||||||++||+.....+.+.|.+ .+.++|+|||+..++..||+++.+..
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 4579999999999999997 47899999999999999999999998875 46789999999988899999998875
Q ss_pred C
Q 040758 763 V 763 (788)
Q Consensus 763 g 763 (788)
.
T Consensus 1152 ~ 1152 (1164)
T TIGR02169 1152 R 1152 (1164)
T ss_pred e
Confidence 3
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.8e-08 Score=118.86 Aligned_cols=60 Identities=13% Similarity=0.142 Sum_probs=50.4
Q ss_pred HccCCCEEEEecCCCCC-CHHHHHHHHHHHH---hcCCEEEEEecCcchh----------hcCCEEEEEccCCC
Q 040758 706 LLSKPQIVLLDESTSAL-DEANEAHLYEQIE---AAGITYISVGHRRTLY----------DFHKRVLRISTVDQ 765 (788)
Q Consensus 706 Ll~~p~iLiLDEpTSaL-D~~se~~i~~~L~---~~g~TvI~IaHr~~~~----------~~~D~Ilvl~~g~~ 765 (788)
+..+|+++++|||+++| |+...+.+.+.++ +.|.++|++||+++.+ ..||+.++|.+|+.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a 722 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAA 722 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccc
Confidence 36799999999999999 6888888887775 4699999999998643 57999999988753
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.8e-08 Score=94.78 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=42.8
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCH----------HHHHHHHHHH---HhcCCEEEEEecCcc
Q 040758 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDE----------ANEAHLYEQI---EAAGITYISVGHRRT 749 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~----------~se~~i~~~L---~~~g~TvI~IaHr~~ 749 (788)
.+.++.++++.+++...+|+++++||+++-++. ...+.+.+.+ ++.+.|+|+++|...
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCC
Confidence 455666788899999999999999999965544 3334444433 235999999999753
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-08 Score=124.25 Aligned_cols=75 Identities=31% Similarity=0.417 Sum_probs=65.1
Q ss_pred CCCCChhHHH------HHHHHHHHccC-----C-CEEEEecCCCCCCHHHHHHHHHHHHh---cC-CEEEEEecCcchhh
Q 040758 689 SSVLSLGEQQ------RLAFARLLLSK-----P-QIVLLDESTSALDEANEAHLYEQIEA---AG-ITYISVGHRRTLYD 752 (788)
Q Consensus 689 g~~LSGGQrQ------RiaIARALl~~-----p-~iLiLDEpTSaLD~~se~~i~~~L~~---~g-~TvI~IaHr~~~~~ 752 (788)
+..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|.. .| .++|+|||+.+++.
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~ 858 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVG 858 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHH
Confidence 4689999999 99999999864 3 67999999999999999998887754 35 48999999999888
Q ss_pred cCCEEEEEccC
Q 040758 753 FHKRVLRISTV 763 (788)
Q Consensus 753 ~~D~Ilvl~~g 763 (788)
.||+++.|.+.
T Consensus 859 ~ad~~~~~~~~ 869 (880)
T PRK02224 859 AADDLVRVEKD 869 (880)
T ss_pred hcCeeEEeecC
Confidence 99999999754
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.5e-07 Score=96.85 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCC---HHHHHHHHHHH---HhcCCEEEEEecCcch--------hhcC
Q 040758 691 VLSLGEQQRLAFARLLLS--KPQIVLLDESTSALD---EANEAHLYEQI---EAAGITYISVGHRRTL--------YDFH 754 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~--~p~iLiLDEpTSaLD---~~se~~i~~~L---~~~g~TvI~IaHr~~~--------~~~~ 754 (788)
..|.++++.+...+.++. +|+++++||||+.+| ......+.+.+ .+.|.|+++++|.... ...+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 367789999999999998 999999999996544 44444443334 3468999999997542 3457
Q ss_pred CEEEEEccC
Q 040758 755 KRVLRISTV 763 (788)
Q Consensus 755 D~Ilvl~~g 763 (788)
|-++.|+..
T Consensus 180 DgvI~L~~~ 188 (234)
T PRK06067 180 DVYLKLRAE 188 (234)
T ss_pred EEEEEEEee
Confidence 888888753
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.4e-08 Score=109.70 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=61.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+.++.++++..|.+ +..+++.++ +|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.+++++
T Consensus 138 ~~~~r~~v~~~l~T-Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev 206 (450)
T PRK06002 138 PAMTRARVETGLRT-GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREV 206 (450)
T ss_pred CCeEeecceEEcCC-CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccH
Confidence 46899999999975 567899996 9999999999999999999999999999999999998866666655
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.5e-07 Score=95.19 Aligned_cols=46 Identities=30% Similarity=0.447 Sum_probs=41.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+=+.+.+++|+.++|+||||||||||++.|+++++|+.|.|.+.
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ie 59 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIE 59 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEC
Confidence 4566678899999999999999999999999999999999999873
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.6e-07 Score=108.00 Aligned_cols=80 Identities=26% Similarity=0.304 Sum_probs=68.4
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEE
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSK--PQIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|......+|||||.|||-+|.-+=.+ -=+.+||||+.+|=+.--..+.+.|+ ..|-|+|+|.||.++++.||+|+
T Consensus 474 tL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~~AD~iI 553 (935)
T COG0178 474 TLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIRAADHII 553 (935)
T ss_pred cccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHhhcCEEE
Confidence 34556789999999999999988765 34779999999998887777777664 47999999999999999999999
Q ss_pred EEccC
Q 040758 759 RISTV 763 (788)
Q Consensus 759 vl~~g 763 (788)
-|-.|
T Consensus 554 DiGPg 558 (935)
T COG0178 554 DIGPG 558 (935)
T ss_pred eeCCC
Confidence 98655
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.2e-07 Score=113.32 Aligned_cols=28 Identities=43% Similarity=0.673 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+++| ++|+||+|+||||+.+.+++...
T Consensus 183 ~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 55666 99999999999999999987543
|
|
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=103.80 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=34.1
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++++.++.+++|+++++|||||+||||++..|++.+....|
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G 285 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG 285 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence 34556666778999999999999999999999988766555
|
|
| >PF13748 ABC_membrane_3: ABC transporter transmembrane region | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00019 Score=73.95 Aligned_cols=154 Identities=17% Similarity=0.004 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 156 QLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYME 235 (788)
Q Consensus 156 ~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 235 (788)
++.+.+.+.++.+.+.+..|++.|..||.+.+++... +..+.++.++..++...+.......-.+.+..+....+.
T Consensus 11 kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~~----~~~~~~~~l~~~~igaaRR~~DTRvf~rIy~~la~~vi~ 86 (237)
T PF13748_consen 11 KLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVWQ----ALMYAALVLLMWAIGAARRIYDTRVFSRIYAELAVPVIL 86 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHH----HHHHHHHHHHHHHHhhhhHHHhhHHHHHHHHHHhHHHHH
Confidence 5778888888999999999999999999998887422 223323332222233333322222212222222222111
Q ss_pred HHhhhhhHHHHhcCCCCCCchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 040758 236 RYLKDQTFYKIQSQSIIDNPDQRIVDD---LSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAI 312 (788)
Q Consensus 236 ~~Lr~~~f~~l~~~~~~~~~~~Ri~~D---v~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i 312 (788)
+ |+.. ..++++++.- ...+.+++..-+..++.+++++++.+++++.++.|+.+.++....+..++
T Consensus 87 ---------~-qr~~--~~~~S~i~ARv~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l~~l~~~~~i 154 (237)
T PF13748_consen 87 ---------S-QRQQ--GLSVSTIAARVALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACLLILALFLLI 154 (237)
T ss_pred ---------H-HHHh--CCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2111 1122333333 34455566666778889999999999999999999998888777777777
Q ss_pred HHHHhhhhhhHhH
Q 040758 313 SIYLGKGLVTLNF 325 (788)
Q Consensus 313 ~~~~~~~l~~~~~ 325 (788)
...+.++..+++.
T Consensus 155 ~~~f~~~~~~L~~ 167 (237)
T PF13748_consen 155 LPRFARRNYRLYR 167 (237)
T ss_pred HHHHHHHHHHHHH
Confidence 7777776665543
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.6e-07 Score=103.09 Aligned_cols=61 Identities=26% Similarity=0.321 Sum_probs=56.5
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcch
Q 040758 690 SVLSLGEQQRLAFARLLLS---------KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~---------~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~ 750 (788)
..+|.||+++++||.+|+. +||||+||||+|.||+.....+.+.|.+.|.++++++|+++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~~~qv~it~~~~~~ 343 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSLGVQVFVTAISLDH 343 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhcCCEEEEEecChhh
Confidence 4699999999999999999 999999999999999999999999997667899999998753
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-07 Score=99.95 Aligned_cols=56 Identities=16% Similarity=0.240 Sum_probs=42.6
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
++++||-.+|+++++||+. |+++.....++ ...|.+++.+.|..+.....+|++.|
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~a-a~tGh~v~~T~Ha~~~~~~~~Rl~~~ 242 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALTA-AETGHLVFGTLHTNSAAQTIERIIDV 242 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHHH-HHcCCcEEEEEcCCCHHHHHHHHHHh
Confidence 3677888999999999997 88887665554 24689999999997765555665433
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.9e-07 Score=105.33 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=63.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
+..+++++ |+|.+||+++|+|+||||||||+++|+|+++++.+.+-..|.++.++. .. .......
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~---------ef-----~~~~l~~ 206 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVK---------EF-----IEHSLQA 206 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHH---------HH-----HHHHhhh
Confidence 45689999 999999999999999999999999999999998654433333333331 00 0000011
Q ss_pred cccCcceEEEEccccccCCC-CHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLG-SLRQQLI 618 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~ 618 (788)
....|..+++++|+...+.. ++.++..
T Consensus 207 ~gl~rsvvv~~~~d~s~~~rl~a~e~a~ 234 (434)
T PRK07196 207 AGMAKSVVVAAPADESPLMRIKATELCH 234 (434)
T ss_pred cccceEEEEEecCCCChhhhHHHHHHHH
Confidence 11234569999999877754 6666664
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-06 Score=77.59 Aligned_cols=57 Identities=33% Similarity=0.264 Sum_probs=46.1
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH-------H--HHhcCCEEEEEecC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE-------Q--IEAAGITYISVGHR 747 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~-------~--L~~~g~TvI~IaHr 747 (788)
...+++.++..+++|-..+|.++++||+....+......... . ....+..+|.++|.
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 60 SGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 378888899999999988899999999999999998876653 1 12357888888883
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-07 Score=95.87 Aligned_cols=28 Identities=29% Similarity=0.495 Sum_probs=26.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++|++++|+||||||||||+++|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999986
|
|
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=90.93 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=33.7
Q ss_pred HHccCCCEEEEecCCCC------CCHHHHHHHHHHHHh----cCCEEEEEecCc
Q 040758 705 LLLSKPQIVLLDESTSA------LDEANEAHLYEQIEA----AGITYISVGHRR 748 (788)
Q Consensus 705 ALl~~p~iLiLDEpTSa------LD~~se~~i~~~L~~----~g~TvI~IaHr~ 748 (788)
+..++|+++|+| |+++ +|+.....+.+.|.+ .|.|+|+++|..
T Consensus 107 ~~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 107 LLIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 335799999999 7654 688877777776643 599999999975
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=83.79 Aligned_cols=73 Identities=23% Similarity=0.305 Sum_probs=57.7
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhc-CCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDF-HKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~-~D~Ilvl~~g~ 764 (788)
.-|-||-=---+.|.+ ++.-|.|||||-|+|.+.-+-.+...|++ .|.-+|+.||.+=++.+ .-.|+.++.+.
T Consensus 129 ~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g 205 (233)
T COG3910 129 HMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESG 205 (233)
T ss_pred hhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCC
Confidence 3688887655566655 46789999999999999999888877764 68899999999876655 45889998764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=98.30 E-value=8.6e-07 Score=90.32 Aligned_cols=30 Identities=30% Similarity=0.452 Sum_probs=24.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+++|+||||||||||.+.|.+++ ..|.+.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v 30 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVI 30 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEE
Confidence 48999999999999999999987 3444544
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=96.59 Aligned_cols=74 Identities=20% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 690 SVLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.-+|+||++++++|+.|+ .+||+++||||||.||......+.+.|.+...++|..+ +....+|+++.+
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~q~~it~t---~~~~~~~~~~~~ 338 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLPQAIVAGT---EAPPGAALTLRI 338 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCCcEEEEcC---CCCCCCceEEEE
Confidence 458999999999999998 89999999999999999999999998865444444433 345678999999
Q ss_pred ccCCCC
Q 040758 761 STVDQN 766 (788)
Q Consensus 761 ~~g~~~ 766 (788)
++|..+
T Consensus 339 ~~~~~~ 344 (349)
T PRK14079 339 EAGVFT 344 (349)
T ss_pred eccEec
Confidence 987543
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=104.61 Aligned_cols=65 Identities=25% Similarity=0.236 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHHcc--CCCEEEEecC---CCCCCHHHHH-HHHHHHHhc-CCEEEEEecCcchhhcCCE
Q 040758 692 LSLGEQQRLAFARLLLS--KPQIVLLDES---TSALDEANEA-HLYEQIEAA-GITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 692 LSGGQrQRiaIARALl~--~p~iLiLDEp---TSaLD~~se~-~i~~~L~~~-g~TvI~IaHr~~~~~~~D~ 756 (788)
+|--+.....++++|-+ ++.++||||| ||.+|...-. .+.+.|.+. +.++|++||..++...+++
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhh
Confidence 66666677777777765 8999999999 9999976643 466777665 6899999999777666553
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.7e-06 Score=107.78 Aligned_cols=78 Identities=27% Similarity=0.301 Sum_probs=66.4
Q ss_pred cCCCCCChhHHHHHHHHH------HHccC--CCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCC
Q 040758 687 EWSSVLSLGEQQRLAFAR------LLLSK--PQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHK 755 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIAR------ALl~~--p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D 755 (788)
....+|||||+=.++||- .+..+ =++|+|||||..||+++...+.+.|.+ .+++||||||+.++...+|
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~ 890 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERAD 890 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCC
Confidence 345789999998666554 44556 699999999999999999999988865 5899999999999999999
Q ss_pred EEEEEccCC
Q 040758 756 RVLRISTVD 764 (788)
Q Consensus 756 ~Ilvl~~g~ 764 (788)
+++.++..+
T Consensus 891 ~~i~V~k~~ 899 (908)
T COG0419 891 VRIRVKKDG 899 (908)
T ss_pred eEEEEEecC
Confidence 999998753
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-06 Score=112.48 Aligned_cols=61 Identities=26% Similarity=0.429 Sum_probs=55.5
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc
Q 040758 688 WSSVLSLGEQQRLA----FARL--------LLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR 748 (788)
Q Consensus 688 ~g~~LSGGQrQRia----IARA--------Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~ 748 (788)
....||||||||++ +|+| +..+|++++|||||++||+.+...+++.+.+.|.++|++||++
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRALDLDFVMTSERE 1316 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHhCCCEEEEccch
Confidence 45789999999997 6765 5589999999999999999999999999999999999999985
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.2e-07 Score=99.79 Aligned_cols=81 Identities=19% Similarity=0.200 Sum_probs=64.8
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
-++.+.-.+++|++++|+|+||+|||||++.|+|...+..|+|.+++..+... .
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~t--------------------------t 237 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHT--------------------------T 237 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcch--------------------------h
Confidence 36667777889999999999999999999999999999999999854322211 1
Q ss_pred CcceEEEEccccccCCCCHHHHhcCCC
Q 040758 595 NSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 595 ~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
.++++++++|+.++++.....|+.+..
T Consensus 238 ~~~~l~~l~~~~~l~DtpG~~~~~l~~ 264 (356)
T PRK01889 238 THRELHPLPSGGLLIDTPGMRELQLWD 264 (356)
T ss_pred hhccEEEecCCCeecCCCchhhhcccC
Confidence 235699999999999887777776653
|
|
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=9.1e-06 Score=100.21 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=42.5
Q ss_pred HHHHHccCCCEEEEecCCCCC-CHHHHHHHHHHHH---hcCCEEEEEecCcch
Q 040758 702 FARLLLSKPQIVLLDESTSAL-DEANEAHLYEQIE---AAGITYISVGHRRTL 750 (788)
Q Consensus 702 IARALl~~p~iLiLDEpTSaL-D~~se~~i~~~L~---~~g~TvI~IaHr~~~ 750 (788)
|+|++..+|+++++|||+++| |+...+.+.+.++ +.|.+++++||+++.
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d 732 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD 732 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 688999999999999999999 7888888777664 468999999999754
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-06 Score=89.67 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=50.7
Q ss_pred EcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 507 KTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 507 ~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
.+.+ +..+++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+..-|.+++++
T Consensus 52 ~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev 110 (326)
T cd01136 52 VLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREV 110 (326)
T ss_pred EcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccH
Confidence 4443 45689999 99999999999999999999999999999999999887766655554
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-06 Score=93.73 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=58.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
.++.++++..+.+ +..+++++ |++.+||+++|+|+||+|||||+++|+|..+++.|.+.+.|..+.++
T Consensus 129 ~~~r~~v~~~l~t-Gi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv 196 (433)
T PRK07594 129 AMVRQPITQPLMT-GIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREV 196 (433)
T ss_pred ceeccCHhheeCC-Cceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHH
Confidence 4777788877764 56799999 99999999999999999999999999999999999888766655544
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.8e-06 Score=95.84 Aligned_cols=61 Identities=10% Similarity=0.163 Sum_probs=44.1
Q ss_pred CCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHHHHHHHHH---HHhcCCEEEEEecCcch----------hhcCC
Q 040758 691 VLSLGEQQRLAFA--RLLLSKPQIVLLDESTSALDEANEAHLYEQ---IEAAGITYISVGHRRTL----------YDFHK 755 (788)
Q Consensus 691 ~LSGGQrQRiaIA--RALl~~p~iLiLDEpTSaLD~~se~~i~~~---L~~~g~TvI~IaHr~~~----------~~~~D 755 (788)
.+|+|++|||.|+ .+|..+|+.. ....+.+.+. +++.|+|+|+++|+.+. .-.||
T Consensus 115 ~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laD 184 (484)
T TIGR02655 115 AIRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSD 184 (484)
T ss_pred HHHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeee
Confidence 4999999999999 6776665544 3444445544 45579999999998642 23589
Q ss_pred EEEEEc
Q 040758 756 RVLRIS 761 (788)
Q Consensus 756 ~Ilvl~ 761 (788)
.|+.|+
T Consensus 185 gVI~L~ 190 (484)
T TIGR02655 185 NVVILR 190 (484)
T ss_pred eEEEEE
Confidence 999887
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.00 E-value=7.3e-06 Score=92.46 Aligned_cols=49 Identities=20% Similarity=0.221 Sum_probs=43.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC---ceEEEee
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR---GKITFYV 561 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~---G~I~~~~ 561 (788)
+..+++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.++
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg 189 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERG 189 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCC
Confidence 45689999 9999999999999999999999999999999886 7776643
|
|
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=97.95 E-value=9.8e-06 Score=91.92 Aligned_cols=55 Identities=22% Similarity=0.253 Sum_probs=49.5
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+|++++|+|+||+|||||+++|+|..+|+.|.+...|..+.++
T Consensus 132 G~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev 186 (422)
T TIGR02546 132 GVRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGERGREV 186 (422)
T ss_pred Cceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEccCCcCH
Confidence 45689999 99999999999999999999999999999999999998866666554
|
|
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0001 Score=82.21 Aligned_cols=86 Identities=26% Similarity=0.269 Sum_probs=63.4
Q ss_pred CCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC-----CHHHHHHH-------------HHHH-HhcCCE
Q 040758 680 NSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL-----DEANEAHL-------------YEQI-EAAGIT 740 (788)
Q Consensus 680 ~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaL-----D~~se~~i-------------~~~L-~~~g~T 740 (788)
.|.||..---.+=||-.-|=-.|..||=..+++||+||=|||- |...++.| ...| ++.|.+
T Consensus 311 ~g~dT~~FsT~~ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvS 390 (448)
T PF09818_consen 311 GGKDTTCFSTENASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVS 390 (448)
T ss_pred CCCCCCcccccCCCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCce
Confidence 4555542122347999999999999999999999999999986 55555554 2233 336888
Q ss_pred EEEEecCc-chhhcCCEEEEEccCCC
Q 040758 741 YISVGHRR-TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 741 vI~IaHr~-~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+--. .....||+|++|++-+.
T Consensus 391 tIlV~Ggsgdy~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 391 TILVVGGSGDYFDVADRVIMMDEYRP 416 (448)
T ss_pred EEEEeccchhhHhhCCEEEEecCccc
Confidence 88887655 46788999999998754
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.055 Score=65.49 Aligned_cols=148 Identities=11% Similarity=0.105 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHH
Q 040758 257 QRIVDDLSSFTGTALSFS----LTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEA 332 (788)
Q Consensus 257 ~Ri~~Dv~~v~~~~~~~~----~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~ 332 (788)
+|-++|+..-........ ..++..+++++.+++++..+.+ ....+++.++..+.+...+.-......++..++..
T Consensus 247 ~r~~Ge~~sR~~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~-ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~ 325 (709)
T COG2274 247 KRSVGEIISRVRELEQIREFLTGSILTLIIDLLFALIFLAVMFL-YSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLI 325 (709)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888766544333322 2344555555555444444433 23333333333333333333333333333333332
Q ss_pred HHHhH-HHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040758 333 DFRYG-LVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSG 408 (788)
Q Consensus 333 ~~~~~-~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G 408 (788)
+.... -.-..|.+..|+.-.....| .++..+|++.+.+..+...+..+.......+..+++- +..++.+|++.
T Consensus 326 ~~~a~~~s~lvE~i~gi~tvK~~~~e-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--l~~v~iL~~G~ 399 (709)
T COG2274 326 EESAEQQSFLVETIKGIETVKALAAE-PRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQ--LSSVLILWFGA 399 (709)
T ss_pred HHHHHHhhHHHHHHhhhHHHHHhhhh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 22211 13344444445555444454 3455666666666555544444443333332222222 22334566654
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=97.91 E-value=3.3e-05 Score=85.97 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=26.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++|..++|+||+||||||+++.|++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5899999999999999999999999985
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00013 Score=90.00 Aligned_cols=46 Identities=26% Similarity=0.496 Sum_probs=39.5
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
-+||.+.++..++|+|+||||||||++.|++......++|.+-+.+
T Consensus 438 ~~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i~~~D~~ 483 (800)
T PRK13898 438 YFNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRMFFFDKD 483 (800)
T ss_pred EEEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 3568888899999999999999999999999888888888875433
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=9.1e-06 Score=89.97 Aligned_cols=55 Identities=16% Similarity=0.252 Sum_probs=50.4
Q ss_pred CCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCC-------EEEEEcCCCCcHHHHHHHHhcC
Q 040758 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKE-------HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge-------~iaIvG~sGsGKSTLl~lL~gl 549 (788)
...|.+++++++|+|| ...+.++++++++++|+ .++|+|++|+|||||++.|.|-
T Consensus 14 ~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~ 75 (339)
T PRK15494 14 EFKGDTEALAAAVRED-ASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGE 75 (339)
T ss_pred hhCCccccccccccCC-CCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567899999999999 46779999999999999 9999999999999999999875
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.2e-05 Score=91.09 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=44.9
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREET 567 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i 567 (788)
-.+++++ |++.+||+++|+|+||||||||+++|+|..+ .+.|.|.+.|..++++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev 206 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREV 206 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHH
Confidence 4578888 9999999999999999999999999999884 4456777666555555
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.4e-06 Score=85.82 Aligned_cols=39 Identities=28% Similarity=0.230 Sum_probs=29.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHh-cCCCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMA-GLWSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~-gl~~p~~G~I~~~ 560 (788)
=+++|+.++|.||+|||||||...++ ....+.++.+++.
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 48899999999999999999988654 2334555556663
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >TIGR03497 FliI_clade2 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=89.91 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=49.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ +++.+||+++|+|+||+|||||+++|++..+++.|.|.+.|..+++.
T Consensus 124 Gi~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gvi~~~Ger~~ev 178 (413)
T TIGR03497 124 GIKAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINVIALIGERGREV 178 (413)
T ss_pred cceeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccchHHH
Confidence 45689999 99999999999999999999999999999999999998876665544
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=64.99 Aligned_cols=38 Identities=26% Similarity=0.472 Sum_probs=29.6
Q ss_pred eeeeeEEEeC-CCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 516 VRDLSLVINE-KEHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 516 L~~isl~i~~-Ge~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
+++-++++.+ |+.+.|.||||||||||+.++.=..-+.
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 3456677775 5799999999999999999987654443
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.5e-05 Score=91.85 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=54.1
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
++|++..|+ .+.+++++++.+..|+.++|+||||||||||++.|.|+.+|.+|++.+++..
T Consensus 187 ~~d~~~v~G--q~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~ 247 (506)
T PRK09862 187 QHDLSDVIG--QEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAA 247 (506)
T ss_pred ccCeEEEEC--cHHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecch
Confidence 457887774 4568999999999999999999999999999999999999999999985443
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.4e-05 Score=96.77 Aligned_cols=43 Identities=28% Similarity=0.282 Sum_probs=35.1
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEe
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFY 560 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~ 560 (788)
=+++..+++++++|+|++|+|||||++.+.+ +.+..+|.++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~ 242 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFID 242 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence 3466778899999999999999999999955 445568888873
|
syringae 6; Provisional |
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=2.1e-05 Score=89.17 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=49.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ +++.+||+++|+|+||+|||||+++++|..+++.|.|.+.|..++++
T Consensus 150 Gi~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev 204 (441)
T PRK09099 150 GVRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREV 204 (441)
T ss_pred Cceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHH
Confidence 45689999 99999999999999999999999999999999999998876655554
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=3.5e-05 Score=68.61 Aligned_cols=48 Identities=40% Similarity=0.512 Sum_probs=36.0
Q ss_pred CCCCChhHHHH-H------HHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 689 SSVLSLGEQQR-L------AFARLLLS------KPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 689 g~~LSGGQrQR-i------aIARALl~------~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+||||||. + |+|..+-. .|.+++|||||+.||+++.+.+.+.|++
T Consensus 30 ~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 30 FGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 35699999954 2 33333333 3799999999999999999999988863
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.5e-05 Score=73.84 Aligned_cols=44 Identities=20% Similarity=0.132 Sum_probs=33.0
Q ss_pred CCCCChhHHHHHHHHHH-----HccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 689 SSVLSLGEQQRLAFARL-----LLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 689 g~~LSGGQrQRiaIARA-----Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+|++++++...... ....|+++ |||++|.....++.+.|.+
T Consensus 120 ~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~ 168 (170)
T cd01876 120 ADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEK 168 (170)
T ss_pred hhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHH
Confidence 44578898887765554 24556766 9999999999999888754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.8e-05 Score=88.45 Aligned_cols=41 Identities=27% Similarity=0.460 Sum_probs=35.5
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++++.++.+++|+++++|||||+||||++..|++.+....|
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 56777888888999999999999999999999998765544
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=2e-05 Score=79.64 Aligned_cols=31 Identities=39% Similarity=0.553 Sum_probs=27.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|+.++|+||||||||||+++|++...+ .+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~ 32 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLV 32 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEE
Confidence 789999999999999999999998876 4554
|
|
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.76 E-value=2.4e-05 Score=89.05 Aligned_cols=55 Identities=20% Similarity=0.262 Sum_probs=48.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+..+++++ |++.+||+++|+|+||+|||||+++|+|..+++.|.+...|..++++
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev 204 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREV 204 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHH
Confidence 45689999 99999999999999999999999999999999999887766666554
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 788 | ||||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-10 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 8e-09 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 8e-09 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 1e-08 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-08 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 5e-08 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 6e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 6e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-07 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-07 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 9e-07 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 1e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-06 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-06 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 9e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-05 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-05 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-05 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-05 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 3e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-05 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 3e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 4e-05 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 4e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-05 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-04 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 3e-04 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 3e-04 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-04 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 5e-04 |
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 3e-22
Identities = 119/658 (18%), Positives = 232/658 (35%), Gaps = 166/658 (25%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
+ +R+ + PY + ++ A + GI + L + + + +
Sbjct: 1 MIKRYLQFVKPYKY---------RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT 51
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI- 251
+++ + A + FV+ E + W + + ++ + + +Q+ S
Sbjct: 52 TDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTS-NKILYDIRKKLYNHLQALSAR 110
Query: 252 -IDNPDQ-----RIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPL------- 298
N R+++D+ L+ + ++ + +I +I++ + L
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 299 --FVVLLVYSIGG------TAISIYLGKGLVTLN-FLQEKKEADFRYGLVRVRENAESIA 349
F +L VY G S L + + FL E R + V +
Sbjct: 171 FPFYILTVYVFFGRLRKLTRERSQALAE----VQGFLHE------RVQGISV------VK 214
Query: 350 FYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE-FFTSGYRYLIQILPAAVV---APMY 405
+A EDNE + F N + + + + I P V+ A +
Sbjct: 215 SFAIEDNEAK----NFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLA 270
Query: 406 FSGKIEFGVI---NQSVSAFNHILGDFSLIVYQFQ-AISAFSAVIDRLGEFDDVLDSSSS 461
SG I G + + L + ++ V + E D+ + +
Sbjct: 271 ISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGA 330
Query: 462 KNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521
+ + +I DI+ ++ + ++A +++D++L
Sbjct: 331 QPIEIKQGRI----------------------------DIDHVSFQYNDNEAPILKDINL 362
Query: 522 VINEKEHLLVMGPSGSGKTSLL----RAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
I + E + +G SG GK++L+ R FY DV S
Sbjct: 363 SIEKGETVAFVGMSGGGKSTLINLIPR--------------FY------------DVTSG 396
Query: 578 EVNSQNMNGELTRSMNRNS-RGVF-FLPQRPYMVLGSLRQQLIY--PTWT-EEVKPASDA 632
++ ++G + S R + Q + ++++ ++ PT T EEV +A
Sbjct: 397 QI---LIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVV---EA 450
Query: 633 AKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSV 691
AK A D I L GY DT E
Sbjct: 451 AKMANA----------------------HDFIMNLPQ---GY--------DTEVGERGVK 477
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
LS G++QRL+ AR+ L+ P I++LDE+TSALD +E+ + E ++ + T + V HR
Sbjct: 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHR 535
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-19
Identities = 48/255 (18%), Positives = 87/255 (34%), Gaps = 78/255 (30%)
Query: 498 LLDIEDLTLK--TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++ ++++ + + + +++L + E ++++GP+GSGKT+LLRA++GL G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLLPYS-G 58
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
I NG R + R LP+
Sbjct: 59 NIFI-------------------------NGMEVRKIRNYIRYSTNLPEA---------- 83
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV--GRKSSKPSTDDLIKALEDVKLG 673
Y +T + V + D ++ L+ +KL
Sbjct: 84 ---YE-------------------IGVTVN---DIVYLYEELKGLDRDLFLEMLKALKL- 117
Query: 674 YILPRLNSLDTTYEWSSV--LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731
+ LS G+ + + L S+P+IV LDE +D A +
Sbjct: 118 ---------GEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168
Query: 732 EQIEAAGITYISVGH 746
I+ G I V H
Sbjct: 169 RYIKEYGKEGILVTH 183
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 125/696 (17%), Positives = 232/696 (33%), Gaps = 175/696 (25%)
Query: 101 SLNTTEPAPEPEPDNDGDGDRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAAV 160
+T + D D F R K+ + W +
Sbjct: 660 RRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPY-------FVVGIF 712
Query: 161 FALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQ------LLYYLGAFAGGIPFFV-- 212
A+ G+ F+ + + + +Q LL+ + I FF+
Sbjct: 713 CAIING--GLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQG 770
Query: 213 -LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNPDQ-------RIVDD 262
A E L R R F + Q + D+P R+ +D
Sbjct: 771 FTFGKAGEILTKRLRY-------------MVFKSMLRQDVSWFDDPKNTTGALTTRLAND 817
Query: 263 ---LSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKG 319
+ TG+ L+ + +N+ GI ++ L+Y T + + +
Sbjct: 818 AAQVKGATGSRLAVIF---------QNIANLGTGI-----IISLIYGWQLTLLLLAIVPI 863
Query: 320 LVTLNFLQEKKEADFRYGLVRVRENAESIAF-----------YAGEDNEMQLLLQRFRSA 368
+ ++ K + + E + IA E + +
Sbjct: 864 IAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQK----FETMYAQS 919
Query: 369 FENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGK-IEFGVINQSVSAFNHILG 427
+ R + ++ T + + A F + ++ F ++L
Sbjct: 920 LQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA--FRFGAYLVTQQLMT-----FENVLL 972
Query: 428 DFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCN 487
FS IV+ A+ S+ D + + + + +I + S+ T
Sbjct: 973 VFSAIVFGAMAVGQVSSFAP---------DYAKATVSASHIIRIIEKTPEIDSYSTQ--- 1020
Query: 488 GALSPEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTS----L 542
L P + + + PT + V + LSL + + + L ++G SG GK++ L
Sbjct: 1021 -GLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLL 1079
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602
R FY D + V ++G+ + +N
Sbjct: 1080 ER--------------FY------------DPMAGSVF---LDGKEIKQLN--------- 1101
Query: 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLV---PFLTSAQKLENV--GRKSSK 657
+ LR QL G+V P L EN+ G S
Sbjct: 1102 -------VQWLRAQL-------------------GIVSQEPILFDCSIAENIAYGDNSRV 1135
Query: 658 PSTDDLIKALEDVKL-GYI--LPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIV 713
S +++++A ++ + +I LP + +T + + LS G++QR+A AR L+ +P I+
Sbjct: 1136 VSYEEIVRAAKEANIHQFIDSLP--DKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL 1193
Query: 714 LLDESTSALDEANEAHLYEQIEAA--GITYISVGHR 747
LLDE+TSALD +E + E ++ A G T I + HR
Sbjct: 1194 LLDEATSALDTESEKVVQEALDKAREGRTCIVIAHR 1229
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 8e-14
Identities = 64/263 (24%), Positives = 111/263 (42%), Gaps = 66/263 (25%)
Query: 492 PEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
P+ Q L+ +++ P+ K + + L+L + + + ++G SG GK++ ++ M L+
Sbjct: 381 PDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY 440
Query: 551 SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610
G ++ D D+ ++ V L R GV + Q P +
Sbjct: 441 DPLDGMVSI--------DGQ--DIRTINVRY------L-----REIIGV--VSQEPVLFA 477
Query: 611 GSLRQQLIY--PTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667
++ + + Y T +E++ A K A D I L
Sbjct: 478 TTIAENIRYGREDVTMDEIE---KAVKEANA----------------------YDFIMKL 512
Query: 668 EDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
+ DT E + LS G++QR+A AR L+ P+I+LLDE+TSALD +
Sbjct: 513 PH---QF--------DTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 561
Query: 727 EAHLYEQIEAA--GITYISVGHR 747
EA + ++ A G T I + HR
Sbjct: 562 EAVVQAALDKAREGRTTIVIAHR 584
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 69/239 (28%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+D+S + + L ++GPSG+GK+++LR + R FY D+ S
Sbjct: 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLF------R----FY------------DISS 108
Query: 577 --LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY--PTWT-EEVKPASD 631
+ ++ Q+++ ++T++ R+ GV +PQ + ++ + Y T +EV+
Sbjct: 109 GCIRIDGQDIS-QVTQASLRSHIGV--VPQDTVLFNDTIADNIRYGRVTAGNDEVE---A 162
Query: 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSS 690
AA++AG+ D I A + GY T E
Sbjct: 163 AAQAAGI----------------------HDAIMAFPE---GY--------RTQVGERGL 189
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
LS GE+QR+A AR +L P I+LLDE+TSALD +NE + + A T I V HR
Sbjct: 190 KLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHR 248
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 81.5 bits (202), Expect = 4e-16
Identities = 102/645 (15%), Positives = 209/645 (32%), Gaps = 148/645 (22%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
F+R W Y L ++ + + A + L + +
Sbjct: 12 TFKRLWTYIRLYKA-------GLVVSTIALVINAAADT-YMISLLKPLLDEGFGNAESNF 63
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI- 251
LG Y ++ + ++ + F +
Sbjct: 64 LRILPFMILGLMFVRGLSGFASSYCLSWVSGN---------VVMQMRRRLFNHFMHMPVR 114
Query: 252 -IDNPDQ-----RIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPL-FVVLLV 304
D RI D G +++ +I +++ L V+++V
Sbjct: 115 FFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVV 174
Query: 305 YSIGGTAISIYLGKGLVTLNFLQEKKEADF------RYGLVRVRENAESIAFYAGEDNEM 358
+ AIS ++ K ++ + +V + Y G++ E
Sbjct: 175 APVVAFAIS-FVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKV------VLSYGGQEVER 227
Query: 359 QLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPA-AVVAPMYFSGKIEFGVINQ 417
+ RF ++ + + + + +IQ++ + A+ A ++ + I
Sbjct: 228 K----RFDKVSNSMRQQTMKLVSAQSIADP---VIQMIASLALFAVLFLASVD---SIRA 277
Query: 418 SVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSS--SSKNLSEPLEKICLTY 475
++ G F V F A+ + L + + L ++
Sbjct: 278 ELTP-----GTF--TVV-FSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDL----- 324
Query: 476 CSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPS 535
T + NG E+ +D++D+T + + +S I + + + ++G S
Sbjct: 325 ------ETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRS 378
Query: 536 GSGKTSLL----RAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591
GSGK+++ R FY DVDS + ++G R
Sbjct: 379 GSGKSTIANLFTR--------------FY------------DVDSGSI---CLDGHDVRD 409
Query: 592 MNRNS-RGVF-FLPQRPYMVLGSLRQQLIY---PTWT-EEVKPASDAAKSAGLVPFLTSA 645
+ R F + Q ++ ++ + Y +T E+++ AA+ A
Sbjct: 410 YKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIE---QAARQAHA------- 459
Query: 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFAR 704
+ I+ + G DT E + LS G++QR+A AR
Sbjct: 460 ---------------MEFIENMPQ---GL--------DTVIGENGTSLSGGQRQRVAIAR 493
Query: 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
LL +++LDE+TSALD +E + ++ T + + HR
Sbjct: 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHR 538
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 9e-16
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 68/238 (28%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD- 575
+ ++ I ++G +GSGK+++ + + R FY D +
Sbjct: 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLY------R----FY------------DAEG 74
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY--PTWT-EEVKPASDA 632
+++ +N+N + R+ R+ G+ +PQ + +++ ++Y T EEV A
Sbjct: 75 DIKIGGKNVN-KYNRNSIRSIIGI--VPQDTILFNETIKYNILYGKLDATDEEVI---KA 128
Query: 633 AKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSV 691
KSA L D I+AL + DT
Sbjct: 129 TKSAQL----------------------YDFIEALPK---KW--------DTIVGNKGMK 155
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
LS GE+QR+A AR LL P+IV+ DE+TS+LD E + +E T I + HR
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHR 213
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 53/261 (20%), Positives = 93/261 (35%), Gaps = 85/261 (32%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
++ ++D+ +++T + LS + E L ++GP+G+GK++LL MAG+ + G+G I
Sbjct: 4 VMQLQDV------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSI 56
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
F + E A +L R L Q+
Sbjct: 57 QFAGQPLEAWSAT----------------KLALH-----RAY--LSQQQ----------- 82
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYI 675
PF T + + T + + L
Sbjct: 83 --------------------TPPFATPVWHYLTLHQH---DKTRTELLNDVAGALALDDK 119
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL-------SKPQIVLLDESTSALDEANEA 728
L R S + LS GE QR+ A ++L Q++LLDE ++LD A ++
Sbjct: 120 LGR--STNQ-------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 170
Query: 729 HLYE---QIEAAGITYISVGH 746
L + + G+ + H
Sbjct: 171 ALDKILSALSQQGLAIVMSSH 191
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 54/244 (22%), Positives = 89/244 (36%), Gaps = 86/244 (35%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ +LSL + E+ +++GP+G+GKT L +AG G+I + + DV
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI--LLDGK--------DVT 65
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
L ++ V+ Q Y
Sbjct: 66 DLSPEKHDIA------F------VY---QN-YS--------------------------- 82
Query: 636 AGLVPFLTSAQKLENVG-----RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSS 690
L P + +N+ +K P ++ D+K+ ++L R
Sbjct: 83 --LFPHMNVK---KNLEFGMRMKKIKDP--KRVLDTARDLKIEHLLDRN---------PL 126
Query: 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QIE------AAGITYI 742
LS GEQQR+A AR L++ P+I+LLDE SALD E + +T +
Sbjct: 127 TLSGGEQQRVALARALVTNPKILLLDEPLSALD----PRTQENAREMLSVLHKKNKLTVL 182
Query: 743 SVGH 746
+ H
Sbjct: 183 HITH 186
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 3e-15
Identities = 65/281 (23%), Positives = 103/281 (36%), Gaps = 86/281 (30%)
Query: 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++L E++ K L + +SL + + E + ++G SGSGK++LL + L + G
Sbjct: 2 AEILRAENIK-KVIRGYEIL-KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG 59
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
K+ G+ N L LR
Sbjct: 60 KVFL-------------------------EGKEVDYTNEKE-------------LSLLRN 81
Query: 616 QLIYPTWTEEVKPASDAAKSAGLV-------PFLTSAQKLENV------GRKSSKPSTDD 662
+ + G V P LT+ LENV K K + +
Sbjct: 82 RKL------------------GFVFQFHYLIPELTA---LENVIVPMLKMGKPKKEAKER 120
Query: 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
L ++ LG +L+ LS GEQQR+A AR L ++P ++ DE T L
Sbjct: 121 GEYLLSELGLG---DKLSRK------PYELSGGEQQRVAIARALANEPILLFADEPTGNL 171
Query: 723 DEANEA---HLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760
D AN ++ +I G + + V H R L + R L +
Sbjct: 172 DSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEM 212
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 5e-15
Identities = 59/270 (21%), Positives = 93/270 (34%), Gaps = 86/270 (31%)
Query: 491 SPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
++ + K A VR +S I E E + ++GPSGSGKT++LR +AGL
Sbjct: 7 HHHHGSMTIEFVGVE-KIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE 65
Query: 551 SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610
+G + V L +N+ + VF
Sbjct: 66 RPTKGDVWI----------GGKRVTDLPPQKRNVG------L------VF---------- 93
Query: 611 GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG-----RKSSKPSTDDLIK 665
Q Y L +T +NV ++ K D ++
Sbjct: 94 ----QN--Y-----------------ALFQHMTVY---DNVSFGLREKRVPKDEMDARVR 127
Query: 666 -ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDE 724
L ++L R LS G+QQR+A AR L +PQ++L DE +A+D
Sbjct: 128 ELLRFMRLESYANRF---------PHELSGGQQQRVALARALAPRPQVLLFDEPFAAID- 177
Query: 725 ANEAHLYE--QIE------AAGITYISVGH 746
+ + G+T + V H
Sbjct: 178 ---TQIRRELRTFVRQVHDEMGVTSVFVTH 204
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 6e-15
Identities = 60/252 (23%), Positives = 105/252 (41%), Gaps = 65/252 (25%)
Query: 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561
++ + ++ +++L I + E + ++G SGSGK++L + + + G++
Sbjct: 11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI-- 68
Query: 562 KDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIY-- 619
D H D+ + N L R + GV + Q ++ S+ +
Sbjct: 69 ------DGH--DLALADPNW------LRRQV-----GV--VLQDNVLLNRSIIDNISLAN 107
Query: 620 PTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
P + E+V AAK AG D I L + GY
Sbjct: 108 PGMSVEKVI---YAAKLAG----------------------AHDFISELRE---GY---- 135
Query: 679 LNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-- 735
+T E + LS G++QR+A AR L++ P+I++ DE+TSALD +E + +
Sbjct: 136 ----NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 191
Query: 736 AAGITYISVGHR 747
G T I + HR
Sbjct: 192 CKGRTVIIIAHR 203
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 6e-15
Identities = 97/640 (15%), Positives = 215/640 (33%), Gaps = 138/640 (21%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
FRR W AP+ L +A + + A + + L + D+
Sbjct: 12 TFRRLWPTIAPFKA-------GLIVAGIALILNAASDT-FMLSLLKPLLDDGFGKTDRSV 63
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI- 251
L +G + Y ++ + + ++ + F + +
Sbjct: 64 LLWMPLVVIGLMILRGITSYISSYCISWVSGK---------VVMTMRRRLFGHMMGMPVA 114
Query: 252 -IDNPDQ-----RIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPL-FVVLLV 304
D RI D ++ +T+ +I +++ L +++++
Sbjct: 115 FFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVL 174
Query: 305 YSIGGTAISIYLGKGLVTLNFLQEKKEADF------RYGLVRVRENAESIAFYAGEDNEM 358
I AI + K +++ + + + + G++ E
Sbjct: 175 APIVSIAIR-VVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKE------VLIFGGQEVET 227
Query: 359 QLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPA-AVVAPMYFSGKIEFGVINQ 417
+ RF + + + + +IQ++ + A+ +Y + F +
Sbjct: 228 K----RFDKVSNKMRLQGMKMVSASSISDP---IIQLIASLALAFVLYAAS---FPSVMD 277
Query: 418 SVSAFNHILGDF-SLIVYQFQAISAFSAVIDRLGEFDDVLDSS--SSKNLSEPLEKICLT 474
S++A G + + + L + + + L L+
Sbjct: 278 SLTA-----GTITVVFSSMIALMRP----LKSLTNVNAQFQRGMAACQTLFAILDS---- 324
Query: 475 YCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGP 534
K G +++ L+ ++T P + +R+++L I + + ++G
Sbjct: 325 -------EQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGR 377
Query: 535 SGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594
SGSGK+++ + + G I +D ++ E T + R
Sbjct: 378 SGSGKSTIASLITRFYDIDEGHIL---------------MDGHDLR------EYTLASLR 416
Query: 595 NSRGVFFLPQRPYMVLGSLRQQLIY---PTWT-EEVKPASDAAKSAGLVPFLTSAQKLEN 650
N + + Q ++ ++ + Y ++ E+++ +AA+ A
Sbjct: 417 NQVAL--VSQNVHLFNDTVANNIAYARTEEYSREQIE---EAARMAYA------------ 459
Query: 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSK 709
D I +++ G DT E +LS G++QR+A AR LL
Sbjct: 460 ----------MDFINKMDN---GL--------DTIIGENGVLLSGGQRQRIAIARALLRD 498
Query: 710 PQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHR 747
I++LDE+TSALD +E + ++ T + + HR
Sbjct: 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHR 538
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 5e-14
Identities = 42/258 (16%), Positives = 80/258 (31%), Gaps = 56/258 (21%)
Query: 499 LDIEDLTLKTPT------SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552
+ I +L S + + L ++G +G GK++ L+ +AG
Sbjct: 70 IQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 553 GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGS 612
G+ + +E ++ + M + PQ
Sbjct: 130 NLGRFDDPPEWQE----------IIKYFRGSELQNYFTKMLEDDIKAIIKPQY------- 172
Query: 613 LRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672
I V + E + + K S +D+ + ++ ++L
Sbjct: 173 --VDNIPRAIKGPV------------------QKVGELLKLRMEK-SPEDVKRYIKILQL 211
Query: 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
+L R ++ LS GE QR A + + + + DE +S LD + +
Sbjct: 212 ENVLKR--DIEK-------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQ 262
Query: 733 QIE---AAGITYISVGHR 747
I A I V H
Sbjct: 263 IIRSLLAPTKYVICVEHD 280
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 3e-12
Identities = 39/239 (16%), Positives = 66/239 (27%), Gaps = 86/239 (35%)
Query: 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
++ ++ E L++MG +G+GKT+L++ +AG G+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP--------------- 411
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKP---ASD 631
+L SM PQ+ +QL + + +D
Sbjct: 412 ------------KLNVSM---------KPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD 450
Query: 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSV 691
K + + +
Sbjct: 451 VVKPLRIDDII------------DQEVQH------------------------------- 467
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
LS GE QR+A L I L+DE ++ LD + I T V H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 7e-14
Identities = 44/241 (18%), Positives = 85/241 (35%), Gaps = 84/241 (34%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
++ + +++ +++GP+G+GK+ L +AG+ RG++ + +D+ L
Sbjct: 17 NVDFEM-GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL----------NGADITPL 65
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAG 637
+ + V Q
Sbjct: 66 PPERRGIG------F------VP---------------Q------------------DYA 80
Query: 638 LVPFLTSAQKLENVG---RKSSKPSTDDLIK-ALEDVKLGYILPRLNSLDTTYEWSSVLS 693
L P L+ N+ R + D ++ E + + ++L R + LS
Sbjct: 81 LFPHLSVY---RNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRK---------PARLS 128
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE--QIE------AAGITYISVG 745
GE+QR+A AR L+ +P+++LLDE SA+D E + + V
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVD----LKTKGVLMEELRFVQREFDVPILHVT 184
Query: 746 H 746
H
Sbjct: 185 H 185
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 7e-14
Identities = 48/235 (20%), Positives = 91/235 (38%), Gaps = 63/235 (26%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
++S I+ + + ++G +GSGK++LL A L + G+I +D
Sbjct: 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRL-LNTEGEIQ---------------IDG 81
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
+ +S + + ++ +PQ+ ++ G+ R+ L
Sbjct: 82 VSWDSITLE-QWRKAFG-------VIPQKVFIFSGTFRKNLD------------------ 115
Query: 637 GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSL 694
P + S ++ K ++V L ++ + LD + VLS
Sbjct: 116 ---PN--------------AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYISVGHR 747
G +Q + AR +LSK +I+LLDE ++ LD + + A T I R
Sbjct: 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEAR 213
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 8e-14
Identities = 79/425 (18%), Positives = 157/425 (36%), Gaps = 110/425 (25%)
Query: 341 VRENAESI----AFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQIL 396
VREN + AF E+ E + FR A E+L R +IS+ +L F I +
Sbjct: 205 VRENLLGVRVVRAFRR-EEYENE----NFRKANESLRRSIISAFSLIVFALPLFIFI--V 257
Query: 397 PAAVVAPMYFSGK-IEFGVINQ-SVSAF----NHILGDFSLIVYQFQAISAFSAVIDRLG 450
++A ++F G + + S+ A+ I+ +I I SA R+
Sbjct: 258 NMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVL 317
Query: 451 EFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPT 510
E VL+ + + E + AL+ + + E++ +
Sbjct: 318 E---VLNEKPA--IEEA-------------------DNALALPNVEGSVSFENVEFRYFE 353
Query: 511 SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAH 570
+ ++ ++ + + V+G +GSGK++L+ + R
Sbjct: 354 NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIP------R----LI---------- 393
Query: 571 TSDVDSLEVNSQNMNGELTRSMNRNS--RGVFFLPQRPYMVLGSLRQQLIY--PTWT-EE 625
D + V ++ R++ + +PQ + G++++ L + T +E
Sbjct: 394 --DPERGRVE---VDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDE 448
Query: 626 VKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685
+ A+ A+ D I +L + D+
Sbjct: 449 IVEAAKIAQI-------------------------HDFIISLPE-----------GYDSR 472
Query: 686 YEWSSV-LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--EAAGITYI 742
E S G++QRL+ AR L+ KP++++LD+ TS++D E + + + G T
Sbjct: 473 VERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532
Query: 743 SVGHR 747
+ +
Sbjct: 533 IITQK 537
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 70.2 bits (173), Expect = 1e-13
Identities = 52/257 (20%), Positives = 99/257 (38%), Gaps = 67/257 (26%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L + S+ L RD+S + GPSG GK+++ + + G+I
Sbjct: 1 MLSARHVDFAYDDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
T D +D++ + + R+ G + Q ++ G++R+ L
Sbjct: 60 TI--------DGQ--PIDNISLEN------W-----RSQIGF--VSQDSAIMAGTIRENL 96
Query: 618 IY---PTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLG 673
Y +T E++ A ++ + D
Sbjct: 97 TYGLEGDYTDEDLW---QVLDLAFA----------------------RSFVENMPD---Q 128
Query: 674 YILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
+T E +S G++QRLA AR L P+I++LDE+T++LD +E+ + +
Sbjct: 129 L--------NTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQK 180
Query: 733 QIE--AAGITYISVGHR 747
++ G T + + HR
Sbjct: 181 ALDSLMKGRTTLVIAHR 197
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 3e-13
Identities = 50/260 (19%), Positives = 99/260 (38%), Gaps = 69/260 (26%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+L +E+L L + +++ I E ++G +G GK++L + G+
Sbjct: 4 EDYILKVEELNYNYSDGTHAL-KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
G+I F K + + + R S G+ F Q P
Sbjct: 63 GRILFDNKPIDYSRKGIMKL-------------------RESIGIVF--QDP-------D 94
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK----ALEDV 670
QL + ++V + N+ D++ K AL+
Sbjct: 95 NQLFSASVYQDV------------------SFGAVNMKL-----PEDEIRKRVDNALKRT 131
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
+ ++ + T+ LS G+++R+A A +L+ +P++++LDE T+ LD + +
Sbjct: 132 GIEHLKDK-----PTHC----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 731 YEQI----EAAGITYISVGH 746
+ + + GIT I H
Sbjct: 183 MKLLVEMQKELGITIIIATH 202
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 1e-12
Identities = 60/278 (21%), Positives = 101/278 (36%), Gaps = 83/278 (29%)
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTS---- 541
+G+L+P + L+ +D++ P V + L+ + + ++GP+GSGK++
Sbjct: 5 SGSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAAL 64
Query: 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS-RGVF 600
L Y +V ++GE + +
Sbjct: 65 LQN--------------LY------------QPTGGKVL---LDGEPLVQYDHHYLHTQV 95
Query: 601 FL-PQRPYMVLGSLRQQLIY-----PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654
Q P + S R+ + Y PT EE+ A +
Sbjct: 96 AAVGQEPLLFGRSFRENIAYGLTRTPT-MEEIT---AVAMES-------------GA--- 135
Query: 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIV 713
D I GY DT E + LS G++Q +A AR L+ KP+++
Sbjct: 136 ------HDFISGFPQ---GY--------DTEVGETGNQLSGGQRQAVALARALIRKPRLL 178
Query: 714 LLDESTSALDEANEAH----LYEQIEAAGITYISVGHR 747
+LD +TSALD N+ LYE E A T + + +
Sbjct: 179 ILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 53/217 (24%), Positives = 85/217 (39%), Gaps = 76/217 (35%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ +++ I E E ++V+GPSGSGK++ LR + L E+ D +D
Sbjct: 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL---------------EDFDEGEIIIDG 85
Query: 577 LEVNSQNMNGELTRS---MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAA 633
+ + +++ N R M VF Q+
Sbjct: 86 INLKAKDTNLNKVREEVGM------VF--------------QRF---------------- 109
Query: 634 KSAGLVPFLTSAQKLENVG------RKSSKPSTDDL-IKALEDVKLGYILPRLNSLDTTY 686
L P +T L N+ RK + + ++ L+ V L D +
Sbjct: 110 ---NLFPHMTV---LNNITLAPMKVRKWPREKAEAKAMELLDKVGLK---------DKAH 154
Query: 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ LS G+ QR+A AR L +P+I+L DE TSALD
Sbjct: 155 AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 3e-12
Identities = 44/297 (14%), Positives = 105/297 (35%), Gaps = 39/297 (13%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG----- 548
K + ++ + ++ + P + + D++ + + V+GP+G+GK++L+ + G
Sbjct: 667 KQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726
Query: 549 ---LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNM-NGELTRSMNRNSRGVFFLPQ 604
+++ +I + + D E GE +M+R +R +
Sbjct: 727 SGEVYTHENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDA 786
Query: 605 RPYMVLGSL-----RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659
+ + R I+ + + + G + S + + + ++
Sbjct: 787 EAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIP 846
Query: 660 TDDLIKALE------DVKLGYILPRLNSLDTTYEWSSV------------------LSLG 695
+L+++ D+K + L T E LS G
Sbjct: 847 RGELVESHSKMVAEVDMKEALASGQFRPL-TRKEIEEHCSMLGLDPEIVSHSRIRGLSGG 905
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYD 752
++ +L A +P +++LDE T+ LD + L + ++ I + H
Sbjct: 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTK 962
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 26/63 (41%), Positives = 34/63 (53%)
Query: 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749
S LS G + +LA AR +L I+LLDE T+ LD N A L + GIT I++ H
Sbjct: 547 SALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSV 606
Query: 750 LYD 752
D
Sbjct: 607 FLD 609
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 39/235 (16%), Positives = 74/235 (31%), Gaps = 64/235 (27%)
Query: 497 KLLDIEDLT--LKTPTSKA----TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550
+ I +L L V ++ + + ++GP+G+GKT+ ++ +AG
Sbjct: 82 NAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141
Query: 551 SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG--VFFLPQRPYM 608
+ S + + G ++ + + + + Y
Sbjct: 142 IPNLCEDND----------------SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY- 184
Query: 609 VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALE 668
D L+P + E + + ++++K LE
Sbjct: 185 ---------------------VD------LLPKAVKGKVRELLKKVDEVGKFEEVVKELE 217
Query: 669 DVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+ L+ LS GE QR+A A LL K DE +S LD
Sbjct: 218 ------LENVLDR------ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
LS GE QR+A A LL I LLDE ++ LD + +E T + V H
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 530
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+ I + E + ++GP+G GKT+ ++ +AG+ GK+ +
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 60/255 (23%), Positives = 101/255 (39%), Gaps = 68/255 (26%)
Query: 499 LDIEDLT----LKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
+++ +++ TP K L ++SLVINE E LLV G +GSGK++LL+ +AGL
Sbjct: 3 IEVVNVSHIFHRGTPLEKKAL-ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
G + + + ++ + R + G+ F Q P
Sbjct: 62 GDVLYDGERKKGYEI------------------------RRNIGIAF--QYP-------E 88
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
Q +EV + + F + V KA+E V L +
Sbjct: 89 DQFFAERVFDEV--------AFAVKNFYPDRDPVPLV------------KKAMEFVGLDF 128
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+ + LS GE++R+A A +++ +P I++LDE LD + L +
Sbjct: 129 DSFKDRV---PFF----LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIV 181
Query: 735 E---AAGITYISVGH 746
E G T I + H
Sbjct: 182 EKWKTLGKTVILISH 196
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 6e-11
Identities = 41/236 (17%), Positives = 73/236 (30%), Gaps = 60/236 (25%)
Query: 492 PEKSQKLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
+E L V V+ E + ++GP+G+GK++ ++ +AG
Sbjct: 11 SSGLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQ 70
Query: 550 WSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG--VFFLPQRPY 607
D DS + + G ++ + + + + Y
Sbjct: 71 L-----IPNLC-----------GDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114
Query: 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667
D L+P + +E + + ++++KAL
Sbjct: 115 ----------------------VD------LIPKAVKGKVIELLKKADETGKLEEVVKAL 146
Query: 668 EDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
E + L LS GE QR+A A LL DE +S LD
Sbjct: 147 E------LENVLER------EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLD 190
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
LS GE QR+A A LL I LLDE ++ LD + +E T + V H
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEH 460
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559
+ I + E + ++GP+G GKT+ ++ +AG+ GKI +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW 345
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 64.3 bits (157), Expect = 9e-11
Identities = 38/236 (16%), Positives = 66/236 (27%), Gaps = 80/236 (33%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ + E E + ++GP+G GKT+ R + G
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVG--------------------------- 316
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
G ++ S + Q I+P
Sbjct: 317 ----------------EITADEGSVTPEKQIL----SYKPQRIFP--------------- 341
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTTYEWSSVLSL 694
T Q LEN + + S+ + + + L +L +N L S
Sbjct: 342 ---NYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL----------SG 388
Query: 695 GEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEAAGITYISVGH 746
GE Q+L A L + + +LD+ +S LD + + H
Sbjct: 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDH 444
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 1e-07
Identities = 45/237 (18%), Positives = 79/237 (33%), Gaps = 57/237 (24%)
Query: 516 VRDLSL-VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
+ L L V+G +G GKT++L+ +A G F
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILA-----GEIIPNFG-------------- 54
Query: 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWT-EEVKPASDAA 633
+ NS+ E+ + RG + Y L + + V+ AS
Sbjct: 55 ---DPNSKVGKDEVLKRF----RG-----KEIYNYFKELYSNELKIVHKIQYVEYASKFL 102
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
K G V + + K++ G+ + E + + + + + LS
Sbjct: 103 K--GTVNEILT--KIDERGK---------KDEVKELLNMTNLWNK--DANI-------LS 140
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE--AAGITYISVGHRR 748
G QRL A LL + + + D+ +S LD ++ + I I V H
Sbjct: 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 48/221 (21%), Positives = 74/221 (33%), Gaps = 72/221 (32%)
Query: 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576
+ +SL + + ++G SGSGK++ LR + L G I
Sbjct: 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIV----------------- 65
Query: 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSA 636
NG+ + + + L LR +L
Sbjct: 66 --------NGQNINLVRDKDGQLKVADKNQ---LRLLRTRL------------------- 95
Query: 637 GLV-------PFLTSAQKLEN-------VGRKSSKPSTDDLIKALEDVKLGYILPRLNSL 682
+V +T LEN V S + + +K L V +
Sbjct: 96 TMVFQHFNLWSHMTV---LENVMEAPIQVLGLSKHDARERALKYLAKVGID------ERA 146
Query: 683 DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
Y LS G+QQR++ AR L +P ++L DE TSALD
Sbjct: 147 QGKY--PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALD 185
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.2 bits (150), Expect = 5e-10
Identities = 96/660 (14%), Positives = 199/660 (30%), Gaps = 203/660 (30%)
Query: 180 DFYNALADKDQEQFAKQLL------------------YYLGAFAGGIPFFVLRDYARETL 221
F + KD + K +L L F+ L E +
Sbjct: 28 AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--------FWTLLSKQEEMV 79
Query: 222 ALRWRSWMTKYYMERYLKDQTFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLTLFNAA 281
+ ++E L+ YK I Q S T + L+N
Sbjct: 80 ---------QKFVEEVLRIN--YKFLMSPIKTEQRQP-----SMMTRMYIEQRDRLYN-- 121
Query: 282 VDLISFS--------------NILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQ 327
D F+ L + P V+ + + G+ GK V L+
Sbjct: 122 -DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGS------GKTWVALDVCL 172
Query: 328 EKK-EADFRYGL----VRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSR-N 381
K + + + ++ + E++ +Q LL + + + + + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 382 LEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISA 441
+ + R L++ + Y + + +L + V +A +A
Sbjct: 227 IHSIQAELRRLLK-------SKPYENCLL--------------VLLN----VQNAKAWNA 261
Query: 442 F------------SAVIDRLG--EFDDVLDSSSSKNLSEP-LEKICLTY--CSVKSFPTS 484
F V D L + S L+ ++ + L Y C + P
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 485 KCNG-----ALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL-VINEKEH-----LLVMG 533
++ E + L D K T + + SL V+ E+ L +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 534 PSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS--QNMNGELTRS 591
P + ++L ++ +W D + + V+ L S + E T S
Sbjct: 382 PPSAHIPTILLSL--IWFD---------VIKSDVM---VVVNKLHKYSLVEKQPKESTIS 427
Query: 592 MNRNSRGVFFLPQRPYMVLGSLRQQLI--------YPTWTEEVKPASD------------ 631
+ ++ + +L + ++ + + + + P D
Sbjct: 428 IP----SIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLK 482
Query: 632 ---AAKSAGLVP-------FLTSAQKLENVGRKSSKPSTDDLIKALEDVKL--GYILPRL 679
+ L FL QK+ + ++ ++ ++ L+ +K YI
Sbjct: 483 NIEHPERMTLFRMVFLDFRFL--EQKIRHDS--TAWNASGSILNTLQQLKFYKPYICDN- 537
Query: 680 NSLDTTYEWSSVLSLGEQQRLAFARLLLSKP----QIVLLDESTSALDEANEAHLYEQIE 735
D YE V ++ + L+ SK +I L+ E + +EA ++Q++
Sbjct: 538 ---DPKYE-RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEA-----HKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 58.7 bits (141), Expect = 6e-09
Identities = 83/523 (15%), Positives = 156/523 (29%), Gaps = 162/523 (30%)
Query: 354 EDNEMQL----LLQRFRSAF---------ENLTRLLISSRNLEFFTSGYRYLIQILPAAV 400
E E Q +L F AF +++ + ++S ++ I + AV
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--------IIMSKDAV 61
Query: 401 VAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSS 460
+ F + +V +F ++VL
Sbjct: 62 SGTLRL-----FWTLLSKQEE----------MVQKF---------------VEEVLR--- 88
Query: 461 SKN---LSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVR 517
N L P++ T S T E+ +L + + K S+
Sbjct: 89 -INYKFLMSPIK----TEQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 518 DLSLVINE---KEHLLVMGPSGSGKTSLLRAMAGLWSDGR-----GKITFYVKDREETDA 569
L + E +++L+ G GSGKT + A+ S KI F++ +
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVCLSYKVQCKMDFKI-FWLNLKNC--- 192
Query: 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI---YPT----- 621
S LE Q + ++ + S + R + + LR+ L Y
Sbjct: 193 -NSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 622 ---WTEEVKPASDAA-------KSAGLVPFLTSAQKLENVGRKSSKPSTDD-----LIKA 666
+ A + + + + FL++A S T D L+K
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 667 LEDVKLGYILPR----LNSLDTTYEWSSVLSL-GEQQRLAFARL-----LLSKPQIVLLD 716
L D + LPR N LS+ E R A + +++
Sbjct: 311 L-DCRPQD-LPREVLTTNPR--------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 717 ESTSALDEANEAHLYEQI----EAAGITYISVG------------------HRRTL---- 750
S + L+ A +++++ +A I I + H+ +L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 751 -----YDFHKRVLRISTVDQNSSQSNWKLEFIDQESLYNLSRR 788
L + +N + + +D YN+ +
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSI--VDH---YNIPKT 458
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 42/333 (12%), Positives = 91/333 (27%), Gaps = 126/333 (37%)
Query: 15 ICSSYINLKYQQQLHIGIGIGSSQVCLLSSKQHKSPSLL-VFAANVMALPMPSRRRRNFK 73
+ Y++ + Q L +V + P L + A ++ R+
Sbjct: 306 LLLKYLDCRPQD-L-------PREVLTTN------PRRLSIIAESI----------RDGL 341
Query: 74 NEQENLKPCFNNKIKIEIASSCLSAANSLNTTE-----------------PA-------- 108
+N K +K+ I S L N L E P
Sbjct: 342 ATWDNWKHVNCDKLT-TIIESSL---NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 109 --PEPEPDNDGDG-------DRDRDRKTPELNTLFRRFWKVAAPYWFSDDKVQARLQLAA 159
+ + + ++ T + +++ +++ +
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL------ENEYALHRSIVD 451
Query: 160 VFAL--TFATTGISVG------FNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPFF 211
+ + TF + + ++ +G N + F ++
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM--VF------------ 497
Query: 212 VLRDYARETLALRW---------RSWMTKYYMERYLKDQTFYKIQSQSIIDN-PD-QRIV 260
L R+ +W + L+ FYK I DN P +R+V
Sbjct: 498 ---------LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK---PYICDNDPKYERLV 545
Query: 261 DDLSSFTGTALSFSLTLFNAAVDLIS--FSNIL 291
+ + F L +LI ++++L
Sbjct: 546 NAILDF----------LPKIEENLICSKYTDLL 568
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 43/243 (17%), Positives = 82/243 (33%), Gaps = 72/243 (29%)
Query: 494 KSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG 553
L+I DL+ + +++ I + + GP+G GKT+LL+ ++
Sbjct: 6 HHGSKLEIRDLS-VGYDKPV--LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 554 RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSL 613
+G+I + NG + + +FFLP+
Sbjct: 63 KGEIIY-------------------------NGV---PITKVKGKIFFLPEEI------- 87
Query: 614 RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI-KALEDVKL 672
+ ++ L+ V + I ALE V++
Sbjct: 88 -----------------------IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
Query: 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
+ +L L S G +R+ A LL +I +LD+ A+DE ++ + +
Sbjct: 125 LDLKKKLGEL----------SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174
Query: 733 QIE 735
I
Sbjct: 175 SIL 177
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 17/92 (18%), Positives = 37/92 (40%), Gaps = 2/92 (2%)
Query: 483 TSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSL 542
+ L P S L+ ++ + T+++ +S I + + ++ G +G+GKT+L
Sbjct: 6 HHHHSSGLVPRGSHMLIQLDQIGRMK--QGKTILKKISWQIAKGDKWILYGLNGAGKTTL 63
Query: 543 LRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574
L + G + + K + V
Sbjct: 64 LNILNAYEPATSGTVNLFGKMPGKVGYSAETV 95
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-----AGITYISVGH 746
LS GE+QR+ AR L+ +PQ+++LDE + LD L +++ + I V H
Sbjct: 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221
Query: 747 R 747
Sbjct: 222 F 222
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-09
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 87/226 (38%)
Query: 514 TLVRDLSLVINEKEHLLVMGPSGSGKTS----LLRAMAGLWSDGRGKITFYVKDREETDA 569
+++D++ I + + ++GP+GSGKT+ L+R FY
Sbjct: 369 PVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMR--------------FY--------- 405
Query: 570 HTSDVDSLEVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL-------GSLRQQLIY-- 619
DVD ++ ++G R + R+S R +VL ++++ L Y
Sbjct: 406 ---DVDRGQIL---VDGIDIRKIKRSSLRSSI------GIVLQDTILFSTTVKENLKYGN 453
Query: 620 PTWT-EEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
P T EE+K +AAK D IK L + GY
Sbjct: 454 PGATDEEIK---EAAKLTHS----------------------DHFIKHLPE---GY---- 481
Query: 679 LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
+T + LS G++Q LA R L+ P+I++LDE+TS +D
Sbjct: 482 ----ETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ +++++ K + ++++ I E ++GPSG+GKT+ +R +AGL G++
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL- 62
Query: 559 FYVKDREETDAHTSDVD 575
Y DR V
Sbjct: 63 -YFDDRLVASNGKLIVP 78
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 12/63 (19%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--------EAAGITYIS 743
LS G+QQR A AR L P+++LLDE SALD L QI A G + +
Sbjct: 139 LSGGQQQRAALARALAPDPELILLDEPFSALD----EQLRRQIREDMIAALRANGKSAVF 194
Query: 744 VGH 746
V H
Sbjct: 195 VSH 197
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
L I L+ + + D+SL ++ E L ++G SG GKT+LLR +AG G+I
Sbjct: 4 ALHIGHLSKSFQNTPV--LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 558 TF 559
+
Sbjct: 62 SL 63
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 9e-08
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE----AAGITYISVGH 746
LS G++Q + AR + S+ +++LLDE TSALD AN+ + + + +T + H
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
K L +E+L ++ L + L+ +N+ + L V+G +G GK++LL + G+ +GK
Sbjct: 3 KALSVENLGFYYQ-AENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 557 ITF 559
I
Sbjct: 62 IEV 64
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 1e-07
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEA---HLYEQI-EAAGITYISVGHR 747
LS G+QQR+A AR L + P I+L D+ T ALD L +++ E G T + V H
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 748 RTLYDFHKRVLRI 760
+ F +R++ +
Sbjct: 206 INVARFGERIIYL 218
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
S +L+++ L + A ++ + L + + + ++G +G+GKT+ L A+AGL +
Sbjct: 3 SDIVLEVQSLHVYYGAIHA--IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60
Query: 555 GKITFYVKDREETDAH 570
GKI F +D AH
Sbjct: 61 GKIIFNGQDITNKPAH 76
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDE 717
LS GEQQ LA R L+S+P+++++DE
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 20/60 (33%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+ +++L I + E + ++GPSGSGK++LL +AG++ GKI Y +++ T+ D +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI--YFDEKDVTELPPKDRN 76
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723
LS G++QR+A AR L S P+++L D++TSALD
Sbjct: 164 LSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
V L+L I + E L+++GPSG GKT+ LR +AGL G+I Y DR+ T D +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI--YFGDRDVTYLPPKDRN 84
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
VR++SL + + E ++++GPSG GKT+ LR +AGL
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGL 52
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
K V +S + + E + ++GPSG GKT+ L +AG+
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGI 52
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 7e-05
Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 692 LSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYI 742
LS GE+ RLA + L + +++LDE T LDE L +E I
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 743 SVGHRRTLYDFHKRVLRISTVDQNS 767
V H L D V+RIS + +S
Sbjct: 309 LVSHDEELKDAADHVIRISLENGSS 333
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 500 DIEDLTLK-TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
+E++T L +D++ I + L V G +G+GKTSLL + G
Sbjct: 8 VMENVTAFWEEGGTPVL-KDINFKIERGQLLAVAGSTGAGKTSLLMMIMG 56
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 499 LDIEDLTLK-TPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548
+ + + T + TL ++ I E + V+G G GK+SLL A+
Sbjct: 4 ITVRNATFTWARSDPPTL-NGITFSIPEGALVAVVGQVGCGKSSLLSALLA 53
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE---AAGIT 740
S G ++L AR L+ P++ +LDE TS LD N + + ++ G+T
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549
+D++L I+E E ++ +GPSG GK++LLR +AGL
Sbjct: 19 SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGL 52
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDE 717
KA + IL L + LS G+ + + R L++ P+++++DE
Sbjct: 133 KAFK------ILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 20/108 (18%), Positives = 31/108 (28%), Gaps = 17/108 (15%)
Query: 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQR------LA 701
+ + + + T LS GE+ LA
Sbjct: 22 FAEFTEGKYSEVVVRAEENKVRLFVVWE--GKERPLTF------LSGGERIALGLAFRLA 73
Query: 702 FARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGH 746
+ L + +++LDE T LDE L +E I V H
Sbjct: 74 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSH 121
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.96 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.94 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.93 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.93 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.91 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.88 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.87 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.87 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.84 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.84 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.81 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.79 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.79 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.79 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.77 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.75 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.75 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.75 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.74 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.73 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.72 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.72 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.72 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.7 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.7 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.7 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.7 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.68 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.66 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.66 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.66 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.65 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.65 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.65 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.64 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.63 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.63 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.62 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.61 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.6 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.59 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.58 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.56 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.56 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.55 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.54 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.49 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.49 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.49 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.48 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.47 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.46 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.39 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.39 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.39 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.36 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.35 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.32 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.3 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.3 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.26 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.22 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.19 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.19 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.16 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.13 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.08 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.03 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.02 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.01 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.99 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.92 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.87 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.86 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.74 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.73 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.71 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.67 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.65 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.64 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.6 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.6 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.59 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.57 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.51 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.51 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.5 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.45 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.43 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.33 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.31 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.27 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.26 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.23 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.2 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.17 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.16 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.16 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.14 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.14 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.13 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.11 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.1 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.1 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.09 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.01 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.99 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.97 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.89 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.85 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.81 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.81 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.81 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.79 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.76 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.76 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.69 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.65 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.63 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.6 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.6 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.58 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.58 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.57 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.55 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.53 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.52 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.4 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.4 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.4 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.25 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.25 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.25 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.2 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.2 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.16 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.15 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.1 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 97.08 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.08 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.93 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.89 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.89 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.87 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.86 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.86 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.83 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.8 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.78 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.77 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.73 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.72 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.64 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.63 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.62 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.59 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.56 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.48 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.48 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.47 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.44 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.43 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.42 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.32 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.24 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.21 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.2 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.19 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.16 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.11 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.1 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.08 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.08 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.02 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.99 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 95.98 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.96 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.96 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.94 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.87 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.86 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.85 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.75 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.7 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 95.68 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.67 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.66 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.63 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.62 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.61 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.6 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.52 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.5 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.5 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.49 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 95.44 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 95.42 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.36 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 95.36 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.35 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 95.32 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.3 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.25 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.21 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.21 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 95.13 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.09 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.08 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 95.02 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 95.02 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 95.01 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.0 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 94.94 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 94.92 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 94.9 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 94.86 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.82 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 94.79 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 94.77 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 94.77 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 94.76 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 94.73 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 94.72 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 94.71 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 94.67 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 94.66 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 94.66 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 94.66 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 94.63 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 94.61 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 94.59 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 94.59 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 94.57 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 94.56 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 94.55 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 94.55 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 94.55 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 94.51 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 94.51 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 94.5 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 94.5 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 94.5 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 94.49 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 94.47 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 94.46 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 94.45 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 94.44 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 94.43 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 94.42 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 94.4 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 94.4 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 94.38 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 94.37 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 94.36 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.34 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 94.33 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 94.32 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 94.26 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 94.23 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 94.21 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 94.2 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.18 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 94.18 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 94.15 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 94.14 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 94.14 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 94.14 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.13 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.12 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 94.12 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 94.11 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 94.11 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 94.08 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 94.07 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 94.06 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.06 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.03 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 94.02 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.02 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.0 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 93.98 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 93.97 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 93.96 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 93.95 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 93.92 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 93.91 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 93.89 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 93.88 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 93.87 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 93.87 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 93.85 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 93.81 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 93.8 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 93.79 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 93.73 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 93.72 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 93.69 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 93.69 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 93.68 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 93.68 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 93.67 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 93.65 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 93.65 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 93.64 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 93.63 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 93.62 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 93.61 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 93.61 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 93.6 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 93.6 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 93.56 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 93.56 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 93.5 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 93.49 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 93.49 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 93.49 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 93.49 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 93.48 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 93.47 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 93.46 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 93.46 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 93.43 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 93.42 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 93.42 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 93.42 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 93.41 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 93.37 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 93.34 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 93.33 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 93.29 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 93.29 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 93.28 | |
| 3l0o_A | 427 | Transcription termination factor RHO; helicase, RH | 93.25 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 93.25 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 93.23 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 93.22 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 93.22 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 93.22 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 93.19 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 93.17 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 93.16 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 93.16 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 93.16 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.13 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 93.11 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 93.11 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 93.1 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 93.1 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 93.09 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 93.06 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 93.04 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.03 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 93.02 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 93.02 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 93.02 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.01 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 92.97 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 92.93 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 92.9 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 92.89 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 92.89 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.87 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.84 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 92.79 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 92.78 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.78 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 92.77 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 92.75 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 92.73 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 92.69 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 92.69 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 92.63 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 92.62 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 92.61 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 92.6 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 92.59 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 92.57 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 92.57 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 92.56 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 92.55 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.54 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.43 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 92.39 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 92.35 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 92.33 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.33 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 92.32 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 92.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 92.15 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 92.13 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 92.09 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 92.02 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.86 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 91.85 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 91.83 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 91.74 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 91.72 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 91.69 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 91.66 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 91.54 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.49 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 91.47 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 91.41 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 91.34 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 91.29 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 90.74 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 90.73 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 90.71 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 90.63 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 90.52 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 90.47 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 90.47 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 90.44 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 90.4 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 90.32 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 89.71 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 90.08 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 90.08 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 90.02 |
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-70 Score=642.84 Aligned_cols=533 Identities=15% Similarity=0.145 Sum_probs=384.6
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
++++++++++||+ .+++.+++.++..++.+..|++++.++|.+.. ++...++...++++++.++ ..
T Consensus 11 ~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (587)
T 3qf4_A 11 SKTLARYLKPYWI---------FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSLVLKTGILMLIVALI----GA 77 (587)
T ss_dssp CCCGGGGTGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHH----HH
Confidence 3456778888876 35666667777888889999999999997643 3333222211111111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLI 285 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i 285 (788)
+..++...+ ..+ ....+...+|..+|.|++++++ +++ + .+|+++|++.+...+......++..++.++
T Consensus 78 ~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i 152 (587)
T 3qf4_A 78 VGGIGCTVF----ASY-ASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFV 152 (587)
T ss_dssp HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222111 111 2223567889999999988876 322 2 379999999999877666666777777777
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHH
Q 040758 286 SFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRF 365 (788)
Q Consensus 286 ~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~ 365 (788)
+.+++++.++|++++++++.+|+.+++..++.++..+..++.++..++....+.|..+++++||+|+.|+.+.+++.+..
T Consensus 153 ~~~~~l~~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~ 232 (587)
T 3qf4_A 153 GGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKAN 232 (587)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHH
Confidence 77778888999999998888888888888888888888877788888888888999999999999999998875444443
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 366 RSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAV 445 (788)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~ 445 (788)
++..+...+.................+..++.+.++++++..|.+++|.+.+++.++..+..++..+...+..+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s 312 (587)
T 3qf4_A 233 ESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASAS 312 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333222211111111111111122222233344567788899999999888887777777777666666666666777
Q ss_pred HHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEEeC
Q 040758 446 IDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINE 525 (788)
Q Consensus 446 ~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~ 525 (788)
.+|+.++.+. ++..... ......+...+.|+++||+|+|+++++++|+|+||+|++
T Consensus 313 ~~ri~~~l~~---~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~ 368 (587)
T 3qf4_A 313 AKRVLEVLNE---KPAIEEA---------------------DNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKP 368 (587)
T ss_dssp HHHHHHHHHC---CCSCCCC---------------------TTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECT
T ss_pred HHHHHHHHcC---CCccCCC---------------------CCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcC
Confidence 7887765432 1110000 000011123467999999999976567899999999999
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+||||+
T Consensus 369 Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q~ 425 (587)
T 3qf4_A 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTV-----------------------KLKDLRGHISAVPQE 425 (587)
T ss_dssp TCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGB-----------------------CHHHHHHHEEEECSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccC-----------------------CHHHHHhheEEECCC
Confidence 999999999999999999999999999999999965543332 222456789999999
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDT 684 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t 684 (788)
|++|++|++|||.++....+ ++++.++++.+++.+... .++|+++
T Consensus 426 ~~lf~~tv~eni~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~i~~l~~g~~~ 471 (587)
T 3qf4_A 426 TVLFSGTIKENLKWGREDAT----------------------------------DDEIVEAAKIAQIHDFIISLPEGYDS 471 (587)
T ss_dssp CCCCSEEHHHHHTTTCSSCC----------------------------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CcCcCccHHHHHhccCCCCC----------------------------------HHHHHHHHHHhCcHHHHHhcccchhh
Confidence 99999999999999865433 344455555555544333 3479999
Q ss_pred c-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 685 T-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 685 ~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
. +++|.+||||||||++|||||+++|++||||||||+||+++|+.+++.+++ +|+|+|+||||++++..||+|++|+
T Consensus 472 ~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~ 551 (587)
T 3qf4_A 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLH 551 (587)
T ss_dssp EECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEE
T ss_pred HhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEE
Confidence 7 899999999999999999999999999999999999999999999999976 6999999999999999999999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 552 ~G~i 555 (587)
T 3qf4_A 552 EGKV 555 (587)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9865
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-71 Score=697.62 Aligned_cols=449 Identities=18% Similarity=0.198 Sum_probs=353.4
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
+.+.+|.++|.|+++++. |++ + .+|+++|++.++..+...+..++..++.+++.+++++.++|++++++++.+
T Consensus 167 ~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~ 246 (1321)
T 4f4c_A 167 MNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVT 246 (1321)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557789999999988775 442 2 389999999999876666677788888888888888999999999999888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH---
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLE--- 383 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~--- 383 (788)
|+.+++..++.++..+...+.++..++....+.|.+.++++||+|+.|+.+.+++ .+..++..+...+.....
T Consensus 247 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 322 (1321)
T 4f4c_A 247 PIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELERY----STAVEEAKKAGVLKGLFLGIS 322 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888999999988888888888888888899999999999999999887644 444443333322221111
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC
Q 040758 384 -FFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK 462 (788)
Q Consensus 384 -~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~ 462 (788)
........+...+.+.++++++..|.+|+|.+..++.++..+..++..+...+..+......++|+.++. +.++..
T Consensus 323 ~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l---~~~~~~ 399 (1321)
T 4f4c_A 323 FGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVL---DRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCccc
Confidence 1111112222233344556778899999999988888887777777777766677777777788887653 322111
Q ss_pred CCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 463 NLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.. . ......+....+.|+|+||+|+||+. ++++|+|+||+|++||++||||||||||||
T Consensus 400 ~~----------------~----~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKST 459 (1321)
T 4f4c_A 400 DS----------------S----SKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKST 459 (1321)
T ss_dssp SC----------------S----SSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHH
T ss_pred cc----------------c----ccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHH
Confidence 00 0 00111122345789999999999853 468999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+|+|++|+|.+||.|.+++ +.+.+|++||||+|+|+||++||+|||+||.
T Consensus 460 ll~ll~~~~~~~~G~I~idG~~i~~~-----------------------~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~ 516 (1321)
T 4f4c_A 460 IISLLLRYYDVLKGKITIDGVDVRDI-----------------------NLEFLRKNVAVVSQEPALFNCTIEENISLGK 516 (1321)
T ss_dssp HHHHHTTSSCCSEEEEEETTEETTTS-----------------------CHHHHHHHEEEECSSCCCCSEEHHHHHHTTC
T ss_pred HHHHhccccccccCcccCCCccchhc-----------------------cHHHHhhcccccCCcceeeCCchhHHHhhhc
Confidence 99999999999999999976655444 2335678899999999999999999999998
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc-ccCCCCCChhHHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRL 700 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~-~e~g~~LSGGQrQRi 700 (788)
++.+.+++.+||+.+++++|+.. .++|++|. +|+|.+|||||||||
T Consensus 517 ~~~~~~~v~~a~~~a~l~~~i~~---------------------------------lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 517 EGITREEMVAACKMANAEKFIKT---------------------------------LPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp TTCCHHHHHHHHHHTTCHHHHHH---------------------------------STTTTSSEESSSSCCCCHHHHHHH
T ss_pred ccchHHHHHHHHHHccchhHHHc---------------------------------CCCCCccEecCCCCCCCHHHHHHH
Confidence 76666666666666665444322 24799997 999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 701 AFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 701 aIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|||||+++||+||||||||||||+++|+.+++.|++ +|+|+|+||||+++++.||+|+||++|+.
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQV 630 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTTTCSEEEEEETTEE
T ss_pred HHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999986 69999999999999999999999999964
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-70 Score=642.73 Aligned_cols=535 Identities=17% Similarity=0.191 Sum_probs=392.6
Q ss_pred hHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHH
Q 040758 130 LNTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGI 208 (788)
Q Consensus 130 ~~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~ 208 (788)
+...+++++++++++|+ .+++.++++++..++.+..|++++.++|.+.. .+...+....+.+++++++.
T Consensus 21 ~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~- 90 (598)
T 3qf4_B 21 PTATLRRLLGYLRPHTF---------TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPRYMLILGTIYALT- 90 (598)
T ss_dssp HHHHHHHHGGGTGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGGHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH-
Confidence 45678889999988876 36666677777888889999999999998653 33222222111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 209 PFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAA 281 (788)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~ 281 (788)
.+..++...+. .. ....+...+|..+|.|+.+++. +++ + .+|+++|++.+...+...+..++..+
T Consensus 91 ---~~~~~~~~~~~----~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~ 162 (598)
T 3qf4_B 91 ---SLLFWLQGKIM----LT-LSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGI 162 (598)
T ss_dssp ---HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ---HHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222221111 11 1223567788999999988876 332 2 37999999999987766677778888
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHH
Q 040758 282 VDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLL 361 (788)
Q Consensus 282 i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~ 361 (788)
+.+++.+++++.++|++++++++..|+.+++..++.++..+.....++..++..+.+.|..+++++||+|+.|+.+.+++
T Consensus 163 ~~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 242 (598)
T 3qf4_B 163 VTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKF 242 (598)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHH
Confidence 88888888899999999999888888888888888888888888888888888888899999999999999999887655
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 362 LQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISA 441 (788)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~ 441 (788)
.+..++..+...+.................+..++.++++++++..|.+++|.+.+++.++..+..++..+...+..+..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 322 (598)
T 3qf4_B 243 DRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQM 322 (598)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333332222222222222222223333334445567788899999999887777666666666666666666666
Q ss_pred HHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeE
Q 040758 442 FSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSL 521 (788)
Q Consensus 442 ~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl 521 (788)
.....+|+.++.+. +...... ...+.....+.|+++||+|+|++ ++++|+|+||
T Consensus 323 ~~~s~~ri~~~l~~---~~~~~~~----------------------~~~~~~~~~~~i~~~~v~~~y~~-~~~~l~~isl 376 (598)
T 3qf4_B 323 ALASAERIFEILDL---EEEKDDP----------------------DAVELREVRGEIEFKNVWFSYDK-KKPVLKDITF 376 (598)
T ss_dssp HHHHHHHHHHHTTS---CCCCCCS----------------------SCCCCCSCCCCEEEEEEECCSSS-SSCSCCSEEE
T ss_pred HHHHHHHHHHHHcC---CCCCCCC----------------------CCCCCCCCCCeEEEEEEEEECCC-CCccccceEE
Confidence 67777887765432 2110000 00111223467999999999974 5679999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
+|++||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|||
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~-----------------------~~~~~r~~i~~ 433 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI-----------------------KRSSLRSSIGI 433 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHHEEE
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhC-----------------------CHHHHHhceEE
Confidence 9999999999999999999999999999999999999965543322 12245678999
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LN 680 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~ 680 (788)
|||+|++|++||+|||.++....+. +++.++++.+++++..+. ++
T Consensus 434 v~Q~~~lf~~tv~eni~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~ 479 (598)
T 3qf4_B 434 VLQDTILFSTTVKENLKYGNPGATD----------------------------------EEIKEAAKLTHSDHFIKHLPE 479 (598)
T ss_dssp ECTTCCCCSSBHHHHHHSSSTTCCT----------------------------------THHHHHTTTTTCHHHHHTSTT
T ss_pred EeCCCccccccHHHHHhcCCCCCCH----------------------------------HHHHHHHHHhCCHHHHHhccc
Confidence 9999999999999999997543332 344455555555443333 47
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I 757 (788)
|+++. +++|.+|||||||||+|||||+++|++||||||||+||+++++.+++.+++ +|+|+|+||||++.++.||+|
T Consensus 480 g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i 559 (598)
T 3qf4_B 480 GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLI 559 (598)
T ss_dssp GGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEE
T ss_pred cccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEE
Confidence 99997 899999999999999999999999999999999999999999999999875 699999999999999889999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 560 ~~l~~G~i 567 (598)
T 3qf4_B 560 IVLRDGEI 567 (598)
T ss_dssp EEECSSSE
T ss_pred EEEECCEE
Confidence 99999975
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-69 Score=631.24 Aligned_cols=535 Identities=16% Similarity=0.188 Sum_probs=394.4
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+.+++++++++++++ .+++.+++.++..++.+..|++++.++|.+........ ..++++++++..++
T Consensus 10 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (582)
T 3b5x_A 10 WQTFKRLWTYIRLYKA---------GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF---LRILPFMILGLMFV 77 (582)
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH---HHHHHHHHHHHHHH
Confidence 4567788888888765 35555666677778888999999999998654221111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+...+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 78 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T 3b5x_A 78 RGLSGFASSY----CLSW-VSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGAS 152 (582)
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1112 2233567889999999988775 4432 3799999999998776677778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
+++.+++++.++|++++++++.+|+.+++..++.++..+.....++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b5x_A 153 IIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232 (582)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHH
Confidence 88888888889999999888888888888888888888888888888888888889999999999999999988765544
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..............+..+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T 3b5x_A 233 VSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGM 312 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433322222222222222222333333344456678889999999999888888888888887777777777777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
..++|+.++.+ .+.... . +..+.+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~a~~ri~~~l~---~~~~~~--~---------------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i 366 (582)
T 3b5x_A 313 AACQTLFGLMD---LETERD--N---------------------GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSI 366 (582)
T ss_pred HHHHHHHHHHc---CCCcCC--C---------------------CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEE
Confidence 77888766532 211100 0 000011124579999999999743367999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+|+|+|+++|++|+|.+||.|..+. +...+|++|||||
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDY-----------------------KLTNLRRHFALVS 423 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhC-----------------------CHHHHhcCeEEEc
Confidence 99999999999999999999999999999999999965443222 1224567899999
Q ss_pred cccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 604 QRPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
|+|.+|++|++|||.++. .. .+++++.++++.+++++..++ ++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~----------------------------------~~~~~~~~~~~~~~l~~~~~~~p~g 469 (582)
T 3b5x_A 424 QNVHLFNDTIANNIAYAAEGE----------------------------------YTREQIEQAARQAHAMEFIENMPQG 469 (582)
T ss_pred CCCccccccHHHHHhccCCCC----------------------------------CCHHHHHHHHHHCCCHHHHHhCccc
Confidence 999999999999999874 21 134567777888888765555 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
++|. +++|.+||||||||++|||||+++|++||||||||+||+++++.+++.|++ +|+|+|+||||++.++.||+|+
T Consensus 470 ~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b5x_A 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEIL 549 (582)
T ss_pred ccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 5999999999999888999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 550 ~l~~G~i 556 (582)
T 3b5x_A 550 VVDEGEI 556 (582)
T ss_pred EEECCEE
Confidence 9999975
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-70 Score=640.50 Aligned_cols=537 Identities=18% Similarity=0.215 Sum_probs=389.1
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----HHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ----EQFAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~----~~~~~~ll~~~~~~~~~~~ 209 (788)
+++++++++|||+ .+++.++++++..++.+..|++++.++|.+..... ..+......+.+++++..+
T Consensus 2 ~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (578)
T 4a82_A 2 IKRYLQFVKPYKY---------RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72 (578)
T ss_dssp HHHHHHHHGGGHH---------HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 5788899999886 35666666777777888999999999998654221 1111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..++..+ +..+ ....+...+|..+|.|+.+++. +++. .+|+++|++.+.+.+...+..++..++
T Consensus 73 ~~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~ 147 (578)
T 4a82_A 73 VRPPIEFIRQY----LAQW-TSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147 (578)
T ss_dssp THHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222211 1112 2233567789999999988775 4332 279999999998866554555667777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.++..+++++.++|++++++++..|+.+++..++.++..+...+.++..++....+.|..+++++||+|+.|+.+.+++.
T Consensus 148 ~~i~~~~~l~~~~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 227 (578)
T 4a82_A 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD 227 (578)
T ss_dssp HHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 77777778888999999998888888888888888988888888888888888889999999999999999998876554
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
+..++..+...+.................+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~ 307 (578)
T 4a82_A 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333322222211111122222222333344455677888999999999888887777777777777666667777
Q ss_pred HHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEE
Q 040758 443 SAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLV 522 (788)
Q Consensus 443 ~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~ 522 (788)
...++|+.++.+ .+...... .+..+.+...+.|+++||+|+|+++++++|+|+||+
T Consensus 308 ~~s~~ri~~~l~---~~~~~~~~---------------------~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~ 363 (578)
T 4a82_A 308 FASMDRVFQLID---EDYDIKNG---------------------VGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLS 363 (578)
T ss_dssp HHHHHHHHHHHT---CCCSSCCC---------------------TTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEE
T ss_pred HHHHHHHHHHHc---CCCcccCC---------------------CCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEE
Confidence 777888876543 22110000 000111123467999999999986566899999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
|++||++|||||||||||||+++|+|+++|++|+|.+||.|..++ +.+.+|++||||
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~r~~i~~v 420 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF-----------------------LTGSLRNQIGLV 420 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHTEEEE
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhC-----------------------CHHHHhhheEEE
Confidence 999999999999999999999999999999999999965443322 122456779999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
||+|++|++|++|||.++.+..+ ++++.++++.+++.+.... ++|
T Consensus 421 ~Q~~~l~~~tv~eni~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~lp~g 466 (578)
T 4a82_A 421 QQDNILFSDTVKENILLGRPTAT----------------------------------DEEVVEAAKMANAHDFIMNLPQG 466 (578)
T ss_dssp CSSCCCCSSBHHHHHGGGCSSCC----------------------------------HHHHHHHHHHTTCHHHHHTSTTG
T ss_pred eCCCccCcccHHHHHhcCCCCCC----------------------------------HHHHHHHHHHhCcHHHHHhCcch
Confidence 99999999999999999754332 3455556666665544333 479
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
++|. +++|.+||||||||++|||||+++|++||||||||+||+++++.+.+.+++ +++|+|+||||++.++.||+|+
T Consensus 467 ~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~ 546 (578)
T 4a82_A 467 YDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIV 546 (578)
T ss_dssp GGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEE
T ss_pred hhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 6899999999999998999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 547 ~l~~G~i 553 (578)
T 4a82_A 547 VIENGHI 553 (578)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 9999864
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-69 Score=629.53 Aligned_cols=535 Identities=16% Similarity=0.180 Sum_probs=392.5
Q ss_pred HHHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Q 040758 131 NTLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 131 ~~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
.+.+++++++++++|+ .+++.+++.++..++.+..|++++.++|.+........ +.++++++++..++
T Consensus 10 ~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (582)
T 3b60_A 10 WQTFRRLWPTIAPFKA---------GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV---LLWMPLVVIGLMIL 77 (582)
T ss_dssp CHHHHHHHHHHGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHH---HHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH---HHHHHHHHHHHHHH
Confidence 3457788888888865 35555666677777888999999999997654322111 11111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++... +..+ ....+...+|..+|.|+.+.+. +++. .+|+++|++.+...+...+..++..++.
T Consensus 78 ~~~~~~~~~~----~~~~-~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~ 152 (582)
T 3b60_A 78 RGITSYISSY----CISW-VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 152 (582)
T ss_dssp HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222211 1111 2233567889999999988776 3322 3799999999998777777778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
+++.+++++.++|++++++++..|+.+++..++.++..+..+..++..+++...+.|..+++++||+|+.|+.+.+++.+
T Consensus 153 ~i~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b60_A 153 IIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHH
Confidence 88888888889999999988888888888888888888888888888888888889999999999999999988865554
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+..............+..+..++.++++++++..|.+|+|.+.+++.++..+..++..+...+..+....
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 312 (582)
T 3b60_A 233 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 312 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444433333222222222222222222233333445566778999999999888888888888887777777777777
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCCCccceeeeeEEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVI 523 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i 523 (788)
..++|+.++.+. +.... . +..+.+...+.|+++||+|+|+++++++|+|+||+|
T Consensus 313 ~a~~ri~~~l~~---~~~~~--~---------------------~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i 366 (582)
T 3b60_A 313 AACQTLFAILDS---EQEKD--E---------------------GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKI 366 (582)
T ss_dssp HHHHHHHHHHHS---CCSCC--C---------------------CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEE
T ss_pred HHHHHHHHHHcC---CCCcc--C---------------------CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEE
Confidence 778887765432 11100 0 000011124579999999999743367999999999
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP 603 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~ 603 (788)
++||++|||||||||||||+++|+|+++|++|+|.+||.|..++ +...+|++|+|||
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~-----------------------~~~~~~~~i~~v~ 423 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY-----------------------TLASLRNQVALVS 423 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB-----------------------CHHHHHHTEEEEC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEcccc-----------------------CHHHHHhhCeEEc
Confidence 99999999999999999999999999999999999965443222 1123466799999
Q ss_pred cccccCCCCHHHHhcCCC-CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 604 QRPYMVLGSLRQQLIYPT-WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 604 Q~~~lf~~Ti~eNi~~~~-~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
|+|.+|++|++|||.++. .. .+++++.++++.+++++..++ ++|
T Consensus 424 Q~~~l~~~tv~eni~~~~~~~----------------------------------~~~~~~~~~l~~~~l~~~~~~~p~g 469 (582)
T 3b60_A 424 QNVHLFNDTVANNIAYARTEE----------------------------------YSREQIEEAARMAYAMDFINKMDNG 469 (582)
T ss_dssp SSCCCCSSBHHHHHHTTTTSC----------------------------------CCHHHHHHHHHTTTCHHHHHHSTTG
T ss_pred cCCcCCCCCHHHHHhccCCCC----------------------------------CCHHHHHHHHHHcCCHHHHHhcccc
Confidence 999999999999999874 21 134567777888887665554 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
+++. +++|.+||||||||++|||||+++|++||||||||+||+++++.+++.+++ +|+|+|+||||++.++.||+|+
T Consensus 470 ~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~ 549 (582)
T 3b60_A 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV 549 (582)
T ss_dssp GGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEE
T ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999875 5999999999999888999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 550 ~l~~G~i 556 (582)
T 3b60_A 550 VVEDGII 556 (582)
T ss_dssp EEETTEE
T ss_pred EEECCEE
Confidence 9999864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-69 Score=678.16 Aligned_cols=536 Identities=16% Similarity=0.141 Sum_probs=359.2
Q ss_pred HHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHH
Q 040758 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ---FAKQLLYYLGAFAGGIP 209 (788)
Q Consensus 133 ~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~~~---~~~~ll~~~~~~~~~~~ 209 (788)
.+.+++.+.+|+|+. +++.++++.+...+...+++++..+++......... .....++++++.++..+
T Consensus 739 ~~~~~~~~~~~~~~~---------l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 809 (1321)
T 4f4c_A 739 NLFEILYHARPHALS---------LFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGI 809 (1321)
T ss_dssp CHHHHHHHTGGGHHH---------HHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 355667777887762 333344444444455577778888888664322111 11111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC--CCCC---c----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQS--IIDN---P----DQRIVDDLSSFTGTALSFSLTLFNA 280 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~--~~~~---~----~~Ri~~Dv~~v~~~~~~~~~~ii~~ 280 (788)
+.++..++.. + ....+.+.+|..+|.++.+.+ +|+. + .+|+++|++.+...+...+..++..
T Consensus 810 ~~~~~~~~~~--------~-~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~ 880 (1321)
T 4f4c_A 810 CSFLMTFFMG--------I-ASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITT 880 (1321)
T ss_dssp HHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHH
T ss_pred HHHHHHHHHH--------H-HHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHH
Confidence 1222222211 1 122345778899999997655 5664 2 2799999999988666666677777
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHH
Q 040758 281 AVDLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQL 360 (788)
Q Consensus 281 ~i~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~ 360 (788)
++.+++.+++++.++|++++++++.+|+.+++..++.++......+..+..++......|.++++++||+|+.|+.+.++
T Consensus 881 ~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~ 960 (1321)
T 4f4c_A 881 LVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYEN 960 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHH
T ss_pred hhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHH
Confidence 77887777888889999999888888877777777777665555444555556666678999999999999999888765
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 040758 361 LLQRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQS--VSAFNHILGDFSLIVYQFQA 438 (788)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~--~~~~~~~~~~l~~~~~~~~~ 438 (788)
+.+..+...+...+.................+...+.+.+++.++..|..++|.+... +.++......+..+...+..
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1040 (1321)
T 4f4c_A 961 FCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPE 1040 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5444444333322211111111111111122222233334455666676666543221 11111111112222222333
Q ss_pred HHHHHHHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-Ccccee
Q 040758 439 ISAFSAVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVR 517 (788)
Q Consensus 439 l~~~~~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~ 517 (788)
+.......+|+.++.+. +.+.+. . .......+..|.|+|+||+|+||++ +.++|+
T Consensus 1041 ~~~~~~a~~ri~~~l~~---~~~~~~----------------~-----~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~ 1096 (1321)
T 4f4c_A 1041 YAKATFAGGIIFGMLRK---ISKIDS----------------L-----SLAGEKKKLYGKVIFKNVRFAYPERPEIEILK 1096 (1321)
T ss_dssp HHHHHHHHHHHHHHHHC---CCSSCT----------------T-----CCCSBCCCCCCCEEEEEEEECCTTSCSSCSEE
T ss_pred HHHHHHHHHHHHHHhhC---cccCCC----------------c-----cCCCCCCCCCCeEEEEEEEEeCCCCCCCcccc
Confidence 44444556666554332 111000 0 0001112345789999999999853 447999
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+||+|+|||++|||||||||||||+++|.|+|+|++|+|.+||.|..++ +++.+|+
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i-----------------------~~~~lR~ 1153 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTL-----------------------NPEHTRS 1153 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTB-----------------------CHHHHHT
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhC-----------------------CHHHHHh
Confidence 99999999999999999999999999999999999999999976655444 2346788
Q ss_pred eEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc
Q 040758 598 GVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 677 (788)
+|++|||||+||+|||||||+||.... ..++++++++++.+++++++.
T Consensus 1154 ~i~~V~Qdp~LF~gTIreNI~~gld~~--------------------------------~~sd~ei~~Al~~a~l~~~I~ 1201 (1321)
T 4f4c_A 1154 QIAIVSQEPTLFDCSIAENIIYGLDPS--------------------------------SVTMAQVEEAARLANIHNFIA 1201 (1321)
T ss_dssp TEEEECSSCCCCSEEHHHHHSSSSCTT--------------------------------TSCHHHHHHHHHHTTCHHHHH
T ss_pred heEEECCCCEeeCccHHHHHhccCCCC--------------------------------CCCHHHHHHHHHHhCChHHHH
Confidence 899999999999999999999984321 134566677777777655444
Q ss_pred c-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhc
Q 040758 678 R-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDF 753 (788)
Q Consensus 678 ~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~ 753 (788)
. ++||||. +|+|.+|||||||||||||||++||+|||||||||+||+++|+.|++.|++ +|+|+|+||||+++++.
T Consensus 1202 ~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~ 1281 (1321)
T 4f4c_A 1202 ELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMN 1281 (1321)
T ss_dssp TSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTT
T ss_pred cCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHh
Confidence 3 5899997 999999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred CCEEEEEccCCC
Q 040758 754 HKRVLRISTVDQ 765 (788)
Q Consensus 754 ~D~Ilvl~~g~~ 765 (788)
||+|+||++|+.
T Consensus 1282 aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1282 ADCIAVVSNGTI 1293 (1321)
T ss_dssp CSEEEEESSSSE
T ss_pred CCEEEEEECCEE
Confidence 999999999975
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-65 Score=646.40 Aligned_cols=448 Identities=19% Similarity=0.198 Sum_probs=336.9
Q ss_pred HHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 040758 234 MERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYS 306 (788)
Q Consensus 234 ~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~~i~~~~il~~~~~~L~l~~ll~~ 306 (788)
+.+.+|.++|.|++++++ |++ + .+|+++|++.+...+...+..++..++.+++.+++++.++|++++++++..
T Consensus 139 ~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~ 218 (1284)
T 3g5u_A 139 QIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAIS 218 (1284)
T ss_dssp HHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999998876 443 2 389999999999887777777888888888888888999999999999888
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISSRNLEFFT 386 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (788)
|+.+++..++.++..+.....++..++......|.+.++++||+|+.|+.+.+ +|.+..++..+...+........
T Consensus 219 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 294 (1284)
T 3g5u_A 219 PVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE----RYNNNLEEAKRLGIKKAITANIS 294 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHH----HHHHHHHHHHHHHHTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888899999999999999998875 45555444444333322222111
Q ss_pred H----HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhcccccCC
Q 040758 387 S----GYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAVIDRLGEFDDVLDSSSSK 462 (788)
Q Consensus 387 ~----~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~rl~~~~~i~~~~~~~ 462 (788)
. ....+...+.+.++++++..|.+++|.+.+++.++.....++..+...+..+.......+|+.++ ++.++..
T Consensus 295 ~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~---l~~~~~~ 371 (1284)
T 3g5u_A 295 MGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI---IDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCcC
Confidence 1 11222223334455677888999999876555444444444444444444555555556666543 3322110
Q ss_pred CCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHH
Q 040758 463 NLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTS 541 (788)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKST 541 (788)
.. .+ .....++...+.|+++||+|+|+++ +.++|+|+||+|++||++||||||||||||
T Consensus 372 ~~----------------~~----~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKST 431 (1284)
T 3g5u_A 372 DS----------------FS----KSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKST 431 (1284)
T ss_dssp SS----------------CC----SSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHH
T ss_pred Cc----------------cc----ccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHH
Confidence 00 00 0001112345789999999999853 357999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 542 LLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 542 Ll~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
|+++|+|+|+|++|+|.+||.|..++ +.+.+|++||||||+|++|++||+|||.++.
T Consensus 432 l~~ll~g~~~~~~G~i~i~g~~i~~~-----------------------~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~ 488 (1284)
T 3g5u_A 432 TVQLMQRLYDPLDGMVSIDGQDIRTI-----------------------NVRYLREIIGVVSQEPVLFATTIAENIRYGR 488 (1284)
T ss_dssp HHHHTTTSSCCSEEEEEETTEEGGGS-----------------------CHHHHHHHEEEECSSCCCCSSCHHHHHHHHC
T ss_pred HHHHHhCCCCCCCeEEEECCEEHHhC-----------------------CHHHHHhheEEEcCCCccCCccHHHHHhcCC
Confidence 99999999999999999965543332 2234567899999999999999999999976
Q ss_pred CccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHH
Q 040758 622 WTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQR 699 (788)
Q Consensus 622 ~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQR 699 (788)
...+.+++. ++++.+++.+.+. .++|++|. +++|.+||||||||
T Consensus 489 ~~~~~~~~~----------------------------------~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~Qr 534 (1284)
T 3g5u_A 489 EDVTMDEIE----------------------------------KAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQR 534 (1284)
T ss_dssp SSCCHHHHH----------------------------------HHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHH
T ss_pred CCCCHHHHH----------------------------------HHHHHhCcHHHHHhccccccccccCCCCccCHHHHHH
Confidence 544433444 4444444433222 23789996 89999999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|+|||||+++|+|||||||||+||+++|+.+++.+++ .|+|+|+||||+++++.||+|++|++|+.
T Consensus 535 iaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 535 IAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVI 602 (1284)
T ss_dssp HHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTTCSEEEECSSSCC
T ss_pred HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 9999999999999999999999999999999999875 69999999999999988999999999975
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-61 Score=607.03 Aligned_cols=540 Identities=16% Similarity=0.167 Sum_probs=362.4
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHHHHHHHHHHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ-EQFAKQLLYYLGAFAGGIPFFV 212 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~-~~~~~~ll~~~~~~~~~~~~~~ 212 (788)
+++++++.+++|+. +++.++++++..++...++++++.+++.+...+. .........+.+++++..++..
T Consensus 693 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 763 (1284)
T 3g5u_A 693 FWRILKLNSTEWPY---------FVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISF 763 (1284)
T ss_dssp TTHHHHHHHHTCCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcchHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 45677888888874 4555555666666777888999999987654332 1111111111111111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC---c----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 213 LRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN---P----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 213 ~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~---~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
+..++...+ ..+ ....+...+|..+|.++.+.++ |++ + .+|+++|++.+...+...+..++..++.
T Consensus 764 ~~~~~~~~~----~~~-~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~ 838 (1284)
T 3g5u_A 764 ITFFLQGFT----FGK-AGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIAN 838 (1284)
T ss_dssp HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111 2233557788899999987765 553 2 2799999999998776666677777777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
++..+++++.++|++++++++.+|+.+++..+..+.+.......++..........|..+++++||+|+.|+.+.+++.+
T Consensus 839 ~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~ 918 (1284)
T 3g5u_A 839 LGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQ 918 (1284)
T ss_dssp HHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77777788888999988888887777777766666666655555555556666678999999999999999888765544
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..+...+...+..........+......+...+.+.++++++..|.+++|.+..++.++.....++..+......+....
T Consensus 919 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 998 (1284)
T 3g5u_A 919 SLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKAT 998 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333332221111111111111111122222223344455667888888776544433322222222221111222233
Q ss_pred HHHHHhHhhhhhcccccCCCCCchhhhhhhhccccCCCCCCCCCCCCCCcCCCCcEEEeeeEEEcCCC-CccceeeeeEE
Q 040758 444 AVIDRLGEFDDVLDSSSSKNLSEPLEKICLTYCSVKSFPTSKCNGALSPEKSQKLLDIEDLTLKTPTS-KATLVRDLSLV 522 (788)
Q Consensus 444 ~~~~rl~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~nvsf~y~~~-~~~vL~~isl~ 522 (788)
...+|+.++.+ .++.... .+ .....+....+.|+++||+|+|+++ +.++|+|+||+
T Consensus 999 ~a~~ri~~~l~---~~~~~~~----------------~~----~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~ 1055 (1284)
T 3g5u_A 999 VSASHIIRIIE---KTPEIDS----------------YS----TQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLE 1055 (1284)
T ss_dssp HHHHHHHHHHH---SCCSSSS----------------CC----SSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEE
T ss_pred HHHHHHHHHHc---CCCcccc----------------cc----cccccccCCCCcEEEEEEEEECCCCCCCeeecceeEE
Confidence 44455544332 1111000 00 0001112245689999999999753 24699999999
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
|++||++|||||||||||||+++|+|+|+|++|+|.+||.|..++ +.+.+|++|+||
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~-----------------------~~~~~r~~i~~v 1112 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQL-----------------------NVQWLRAQLGIV 1112 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSS-----------------------CHHHHTTSCEEE
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccC-----------------------CHHHHHhceEEE
Confidence 999999999999999999999999999999999999965543322 223457789999
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccccccc-CCC
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR-LNS 681 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g 681 (788)
||||.+|++||+|||.++.... ..+++++.++++.+++.....+ ++|
T Consensus 1113 ~Q~~~l~~~ti~eNi~~~~~~~--------------------------------~~~~~~i~~~~~~~~~~~~i~~l~~g 1160 (1284)
T 3g5u_A 1113 SQEPILFDCSIAENIAYGDNSR--------------------------------VVSYEEIVRAAKEANIHQFIDSLPDK 1160 (1284)
T ss_dssp ESSCCCCSSBHHHHHTCCCSSC--------------------------------CCCHHHHHHHHHHHTCHHHHSSTTTG
T ss_pred CCCCccccccHHHHHhccCCCC--------------------------------CCCHHHHHHHHHHhCcHHHHHhCccc
Confidence 9999999999999999975421 1244567777777777665554 489
Q ss_pred cccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Il 758 (788)
|||. +|+|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++ .|+|+|+||||++++..||||+
T Consensus 1161 ldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~ 1240 (1284)
T 3g5u_A 1161 YNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIV 1240 (1284)
T ss_dssp GGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEE
T ss_pred cccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEE
Confidence 9997 899999999999999999999999999999999999999999999999975 6899999999999998999999
Q ss_pred EEccCCC
Q 040758 759 RISTVDQ 765 (788)
Q Consensus 759 vl~~g~~ 765 (788)
+|++|+.
T Consensus 1241 vl~~G~i 1247 (1284)
T 3g5u_A 1241 VIQNGKV 1247 (1284)
T ss_dssp EEETBEE
T ss_pred EEECCEE
Confidence 9999964
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=444.46 Aligned_cols=212 Identities=25% Similarity=0.337 Sum_probs=182.4
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.++|.+..++
T Consensus 51 ~~~i~~~~vs~~y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~-------- 121 (306)
T 3nh6_A 51 KGRIEFENVHFSYAD-GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQV-------- 121 (306)
T ss_dssp SCCEEEEEEEEESST-TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSB--------
T ss_pred CCeEEEEEEEEEcCC-CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccC--------
Confidence 467999999999974 56799999999999999999999999999999999999999999999965543322
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+|++||||||+|.+|++||+|||.|+....
T Consensus 122 ---------------~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~------------------------------- 155 (306)
T 3nh6_A 122 ---------------TQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTA------------------------------- 155 (306)
T ss_dssp ---------------CHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTC-------------------------------
T ss_pred ---------------CHHHHhcceEEEecCCccCcccHHHHHHhhcccC-------------------------------
Confidence 1224567799999999999999999999975432
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
+++++.++++.+++..+... ++||++. +++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.
T Consensus 156 ---~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~ 232 (306)
T 3nh6_A 156 ---GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232 (306)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHH
Confidence 23455566666666544433 4789996 899999999999999999999999999999999999999999999999
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .++|+|+||||++++..||+|++|++|+.
T Consensus 233 l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~i 266 (306)
T 3nh6_A 233 LAKVCANRTTIVVAHRLSTVVNADQILVIKDGCI 266 (306)
T ss_dssp HHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEE
T ss_pred HHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEE
Confidence 975 58999999999998888999999999975
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-47 Score=401.23 Aligned_cols=211 Identities=23% Similarity=0.308 Sum_probs=177.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~---------- 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA---------- 76 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----------
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----------
Confidence 5999999999953246799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.||||||++.+|+.|++||+.++...
T Consensus 77 -------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~---------------------------------- 109 (247)
T 2ff7_A 77 -------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPG---------------------------------- 109 (247)
T ss_dssp -------------CHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTT----------------------------------
T ss_pred -------------CHHHHHhcEEEEeCCCccccccHHHHHhccCCC----------------------------------
Confidence 111235679999999999999999999986321
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++....+++ .|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.|+
T Consensus 110 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 189 (247)
T 2ff7_A 110 MSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189 (247)
T ss_dssp CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 1234566677777776655553 588876 78889999999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 190 ~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 190 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 221 (247)
T ss_dssp HHHTTSEEEEECSSGGGGTTSSEEEEEETTEE
T ss_pred HHcCCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 5 59999999999988878999999999864
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-47 Score=396.29 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=179.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+|+|+ +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+..+.
T Consensus 1 ml~~~~l~~~y~-~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------- 69 (243)
T 1mv5_A 1 MLSARHVDFAYD-DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI---------- 69 (243)
T ss_dssp CEEEEEEEECSS-SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT----------
T ss_pred CEEEEEEEEEeC-CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC----------
Confidence 378999999995 246799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+++.|+||||++.+|+.|++||+.++... .
T Consensus 70 -------------~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~---------------------------------~ 103 (243)
T 1mv5_A 70 -------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG---------------------------------D 103 (243)
T ss_dssp -------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS---------------------------------C
T ss_pred -------------CHHHHHhhEEEEcCCCccccccHHHHHhhhccC---------------------------------C
Confidence 112346779999999999999999999986210 0
Q ss_pred CChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+++.++++.+++....+++ .|+++. ++.+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+
T Consensus 104 ~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~ 183 (243)
T 1mv5_A 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (243)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred CCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 1234567778888887766654 688886 77889999999999999999999999999999999999999999999886
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
+ .|+|+|+|||+++.+..||+|++|++|+..
T Consensus 184 ~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (243)
T ss_dssp HHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HhcCCCEEEEEeCChHHHHhCCEEEEEECCEEE
Confidence 5 589999999999887789999999999753
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=395.91 Aligned_cols=214 Identities=21% Similarity=0.319 Sum_probs=168.2
Q ss_pred CCcEEEeeeEEEcCC-CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 496 QKLLDIEDLTLKTPT-SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~-~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.++|+++||+|+|++ +++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~------- 86 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQY------- 86 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-------
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccC-------
Confidence 357999999999964 125799999999999999999999999999999999999999999999954332111
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
+...+++.|+||||++.+|+.|++|||.|+......
T Consensus 87 ----------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~~~---------------------------- 122 (271)
T 2ixe_A 87 ----------------DHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT---------------------------- 122 (271)
T ss_dssp ----------------CHHHHHHHEEEECSSCCCCSSBHHHHHHTTCSSCCC----------------------------
T ss_pred ----------------CHHHHhccEEEEecCCccccccHHHHHhhhcccCCh----------------------------
Confidence 111235679999999999999999999986432110
Q ss_pred CCCCChHHHHHHHHhcccccccccC-CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRL-NSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~-~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
.+++.++++..++..++..+ +|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+
T Consensus 123 -----~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 197 (271)
T 2ixe_A 123 -----MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197 (271)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHH
Confidence 01111222222222222221 245554 56678999999999999999999999999999999999999999999
Q ss_pred HHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 198 ~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i 234 (271)
T 2ixe_A 198 LLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSV 234 (271)
T ss_dssp HHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEE
T ss_pred HHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 9865 28999999999988777999999999864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-46 Score=392.34 Aligned_cols=211 Identities=22% Similarity=0.349 Sum_probs=173.8
Q ss_pred CcEEEeeeEEEcCCCC-ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 497 KLLDIEDLTLKTPTSK-ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~-~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+.|+++||+|+|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|.+..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~-------- 86 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKY-------- 86 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGB--------
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhc--------
Confidence 4699999999996422 4699999999999999999999999999999999999997 89999954332111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.|+||||++.+|+.|++||+.++....
T Consensus 87 ---------------~~~~~~~~i~~v~Q~~~l~~~tv~enl~~~~~~~------------------------------- 120 (260)
T 2ghi_A 87 ---------------NRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA------------------------------- 120 (260)
T ss_dssp ---------------CHHHHHTTEEEECSSCCCCSEEHHHHHHTTCTTC-------------------------------
T ss_pred ---------------CHHHHhccEEEEcCCCcccccCHHHHHhccCCCC-------------------------------
Confidence 1112356799999999999999999999863211
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..+++.++++.+++...... ++++++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.
T Consensus 121 ---~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ 197 (260)
T 2ghi_A 121 ---TDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197 (260)
T ss_dssp ---CHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 12345566666666544332 3577775 678889999999999999999999999999999999999999999998
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++.+..||+|++|++|+.
T Consensus 198 l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i 231 (260)
T 2ghi_A 198 VEDLRKNRTLIIIAHRLSTISSAESIILLNKGKI 231 (260)
T ss_dssp HHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEE
T ss_pred HHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 875 58999999999988778999999999864
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=384.95 Aligned_cols=215 Identities=22% Similarity=0.329 Sum_probs=166.5
Q ss_pred cEEEeeeEEEcCCCC--ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSK--ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~--~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+|+|+++. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~------- 73 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD------- 73 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-------
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCC-------
Confidence 388999999996422 36999999999999999999999999999999999999999999999654432221
Q ss_pred hhhhcccccccchhccccc-CcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...... .++.||||||++.+|.. |++||+.++...... + .
T Consensus 74 -------------~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~----------~---------------~ 115 (235)
T 3tif_A 74 -------------DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR----------G---------------A 115 (235)
T ss_dssp -------------HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSS----------S---------------C
T ss_pred -------------HHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhc----------c---------------C
Confidence 001111 23469999999999976 999999864210000 0 0
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......+++.++++.+++.... ....+.+||||||||++|||||+++|++||||||||+||+.++..+.+.
T Consensus 116 ~~~~~~~~~~~~~l~~~~l~~~~--------~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 116 MSGEERRKRALECLKMAELEERF--------ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGG--------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCChhh--------hhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 00000123466777777665321 1234677999999999999999999999999999999999999999988
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .|+|+|+|||+++..++||+|++|++|+.
T Consensus 188 l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i 223 (235)
T 3tif_A 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (235)
T ss_dssp HHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 864 39999999999988889999999999864
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=400.67 Aligned_cols=213 Identities=22% Similarity=0.297 Sum_probs=170.5
Q ss_pred CCcEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCc
Q 040758 496 QKLLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~ 573 (788)
..+|+++||+++|+.+ +.++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~----- 96 (366)
T 3tui_C 22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----- 96 (366)
T ss_dssp -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCC-----
T ss_pred CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCC-----
Confidence 4579999999999642 246899999999999999999999999999999999999999999999654432221
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.......|++||||||++.+|.. |++||+.++.... +.
T Consensus 97 ---------------~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~------------~~-------------- 135 (366)
T 3tui_C 97 ---------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD------------NT-------------- 135 (366)
T ss_dssp ---------------HHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS------------CC--------------
T ss_pred ---------------HHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc------------CC--------------
Confidence 11112335679999999999875 9999998752100 00
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+.+.++|+.+++.... ..++.+|||||||||+|||||+.+|++||||||||+||+.+...+.+
T Consensus 136 --~~~~~~~~v~~lL~~vgL~~~~---------~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~ 204 (366)
T 3tui_C 136 --PKDEVKRRVTELLSLVGLGDKH---------DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204 (366)
T ss_dssp --CHHHHHHHHHHHHHHHTCGGGT---------TCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHcCCchHh---------cCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHH
Confidence 0001124577888888876543 34567899999999999999999999999999999999999999998
Q ss_pred HHHh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 733 QIEA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+ ++||||++|++|+.
T Consensus 205 lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~i 242 (366)
T 3tui_C 205 LLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 242 (366)
T ss_dssp HHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 8864 499999999999876 57999999999975
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-45 Score=386.77 Aligned_cols=209 Identities=20% Similarity=0.349 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+|+|++ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ +..
T Consensus 7 ~l~i~~ls~~y~~-~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~---i~~-------- 74 (275)
T 3gfo_A 7 ILKVEELNYNYSD-GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKP---IDY-------- 74 (275)
T ss_dssp EEEEEEEEEECTT-SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEE---CCC--------
T ss_pred EEEEEEEEEEECC-CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEE---CCc--------
Confidence 6999999999964 4569999999999999999999999999999999999999999999995443 310
Q ss_pred hhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ......+++.||||||+| .+|..|++||+.++...... .
T Consensus 75 -------~---~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----------------------------~ 116 (275)
T 3gfo_A 75 -------S---RKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL----------------------------P 116 (275)
T ss_dssp -------S---HHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC----------------------------C
T ss_pred -------c---cccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC----------------------------C
Confidence 0 011123456799999997 57788999999875211000 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+
T Consensus 117 ~~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~ 187 (275)
T 3gfo_A 117 EDEIRKRVDNALKRTGIEHLKD---------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLV 187 (275)
T ss_dssp HHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhc---------CCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence 0001245677888887765433 3456799999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 188 ~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i 222 (275)
T 3gfo_A 188 EMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRV 222 (275)
T ss_dssp HHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 3 499999999998766 67999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-45 Score=404.54 Aligned_cols=211 Identities=24% Similarity=0.338 Sum_probs=180.7
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+|+|+.+++++|+|+||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|.+..+.
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~-------- 87 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSI-------- 87 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSS--------
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcC--------
Confidence 35799999999997546789999999999999999999999999999999999998 899999965443222
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.||||||++.+|+.|++||+.+...
T Consensus 88 ---------------~~~~~rr~ig~v~Q~~~lf~~tv~enl~~~~~--------------------------------- 119 (390)
T 3gd7_A 88 ---------------TLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAA--------------------------------- 119 (390)
T ss_dssp ---------------CHHHHHHTEEEESCCCCCCSEEHHHHHCTTCC---------------------------------
T ss_pred ---------------ChHHHhCCEEEEcCCcccCccCHHHHhhhccc---------------------------------
Confidence 11233567999999999999999999975321
Q ss_pred CCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
...+++.++++.+++....++ +..+++. ++.+.+|||||||||||||||+++|++||||||||+||+.++..+++.
T Consensus 120 --~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~ 197 (390)
T 3gd7_A 120 --HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRT 197 (390)
T ss_dssp --SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 123567778888888766655 4677886 788899999999999999999999999999999999999999999999
Q ss_pred HHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|++ .++|+|+|||+++.+..||||++|++|+.
T Consensus 198 l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 198 LKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231 (390)
T ss_dssp HHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEE
T ss_pred HHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEE
Confidence 976 58999999999988888999999999964
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=374.50 Aligned_cols=198 Identities=21% Similarity=0.290 Sum_probs=162.6
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 46999999999964456899999999999999999999999999999999999999999999831
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|+||||++.+|+.|++||+.++....
T Consensus 70 ---------------------~i~~v~q~~~~~~~tv~enl~~~~~~~-------------------------------- 96 (229)
T 2pze_A 70 ---------------------RISFCSQFSWIMPGTIKENIIFGVSYD-------------------------------- 96 (229)
T ss_dssp ---------------------CEEEECSSCCCCSBCHHHHHHTTSCCC--------------------------------
T ss_pred ---------------------EEEEEecCCcccCCCHHHHhhccCCcC--------------------------------
Confidence 299999999999999999999863210
Q ss_pred CCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+.++.+++....+. +.+.++. ++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+
T Consensus 97 ---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l 173 (229)
T 2pze_A 97 ---EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 173 (229)
T ss_dssp ---HHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence 0111222333333322222 1344443 6678899999999999999999999999999999999999999999874
Q ss_pred -Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 -EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.+ .|+|+|++||+++.+..||++++|++|+.
T Consensus 174 ~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i 207 (229)
T 2pze_A 174 VCKLMANKTRILVTSKMEHLKKADKILILHEGSS 207 (229)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEE
Confidence 33 48999999999987778999999999864
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-45 Score=375.15 Aligned_cols=209 Identities=27% Similarity=0.366 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 4 ~l~~~~l~~~y~--~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 72 (224)
T 2pcj_A 4 ILRAENIKKVIR--GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTN--------- 72 (224)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSC---------
T ss_pred EEEEEeEEEEEC--CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCC---------
Confidence 599999999996 367999999999999999999999999999999999999999999999654322110
Q ss_pred hhcccccccchhcccccCc-ceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 578 EVNSQNMNGELTRSMNRNS-RGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r-~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.......+ +.|+||||++.+|. .|++||+.++.... +. .
T Consensus 73 -----------~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~------------~~----------------~ 113 (224)
T 2pcj_A 73 -----------EKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM------------GK----------------P 113 (224)
T ss_dssp -----------HHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT------------TC----------------C
T ss_pred -----------HHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc------------CC----------------C
Confidence 00001122 56999999999886 49999998742100 00 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.++..+.+.|+
T Consensus 114 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~ 184 (224)
T 2pcj_A 114 KKEAKERGEYLLSELGLGDKLS---------RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184 (224)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTT---------CCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 0001245677888887754432 3456799999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|+|||+++.+++||++++|++|+.
T Consensus 185 ~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i 217 (224)
T 2pcj_A 185 KINEGGTSIVMVTHERELAELTHRTLEMKDGKV 217 (224)
T ss_dssp HHHHTTCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEE
Confidence 4 58999999999887788999999999864
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=374.75 Aligned_cols=197 Identities=24% Similarity=0.298 Sum_probs=161.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 4899999999964346799999999999999999999999999999999999999999999841
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.|+||||++.+++.|++||+.++.....
T Consensus 67 --------------------~i~~v~Q~~~~~~~tv~enl~~~~~~~~-------------------------------- 94 (237)
T 2cbz_A 67 --------------------SVAYVPQQAWIQNDSLRENILFGCQLEE-------------------------------- 94 (237)
T ss_dssp --------------------CEEEECSSCCCCSEEHHHHHHTTSCCCT--------------------------------
T ss_pred --------------------EEEEEcCCCcCCCcCHHHHhhCccccCH--------------------------------
Confidence 2899999999999999999998632100
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+...++++.+++...... +.|+++. ++.+.+|||||||||+|||||+++|++||||||||+||+.++..+.+.|.
T Consensus 95 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~ 171 (237)
T 2cbz_A 95 ---PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171 (237)
T ss_dssp ---THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence 111122222222211111 1344543 66788999999999999999999999999999999999999999999883
Q ss_pred ---h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 ---A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ---~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 172 ~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i 206 (237)
T 2cbz_A 172 GPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKI 206 (237)
T ss_dssp STTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEE
T ss_pred HHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEE
Confidence 2 58999999999988888999999999864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=393.16 Aligned_cols=208 Identities=26% Similarity=0.365 Sum_probs=168.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 4 ~l~i~~ls~~y~--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~--------- 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQ--NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKN--------- 72 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSS---------
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccc---------
Confidence 599999999995 567999999999999999999999999999999999999999999999654321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++||||||++.+|. .|++|||.|+...... ..
T Consensus 73 ------------~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~----------------------------~~ 112 (359)
T 3fvq_A 73 ------------TNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKG----------------------------RT 112 (359)
T ss_dssp ------------CBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSSC----------------------------CS
T ss_pred ------------cccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcCC----------------------------Ch
Confidence 011123567999999999996 5999999997421100 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~- 735 (788)
....+++.++++.+++....+ .++.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|.
T Consensus 113 ~~~~~~v~~~l~~~gL~~~~~---------r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~ 183 (359)
T 3fvq_A 113 AQERQRIEAMLELTGISELAG---------RYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183 (359)
T ss_dssp HHHHHHHHHHHHHHTCGGGTT---------SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011245778888888765443 3466799999999999999999999999999999999999999987553
Q ss_pred ---hcCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 ---AAGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ---~~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+.|+|+|+|||+++. ..+||||++|++|+.
T Consensus 184 ~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i 217 (359)
T 3fvq_A 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRI 217 (359)
T ss_dssp HHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEE
Confidence 359999999999865 478999999999964
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=374.90 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=164.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 6 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--------- 74 (240)
T 1ji0_A 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--------- 74 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred eEEEEeEEEEEC--CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------
Confidence 699999999996 467999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.||||||++.+|.. |++||+.++.... . ..
T Consensus 75 -------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-~----------------------------~~ 112 (240)
T 1ji0_A 75 -------------AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR-K----------------------------DK 112 (240)
T ss_dssp -------------HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC-C----------------------------CS
T ss_pred -------------HHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC-C----------------------------CH
Confidence 000123459999999999986 9999998852110 0 00
Q ss_pred CCChHHHHHHHHhcc-cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVK-LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~-l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+.+.+.++.++ +.... +..+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|+
T Consensus 113 ~~~~~~~~~~l~~~~~l~~~~---------~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 183 (240)
T 1ji0_A 113 EGIKRDLEWIFSLFPRLKERL---------KQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTTT---------TSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHhhHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence 001134556677663 54332 34467899999999999999999999999999999999999999999886
Q ss_pred h---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++. .++||++++|++|+.
T Consensus 184 ~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 217 (240)
T 1ji0_A 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 4 58999999999864 578999999999864
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=379.18 Aligned_cols=220 Identities=18% Similarity=0.313 Sum_probs=166.4
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 7 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~--------- 75 (257)
T 1g6h_A 7 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 75 (257)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred EEEEeeeEEEEC--CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC---------
Confidence 699999999995 467999999999999999999999999999999999999999999999644321110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....++.||||||++.+|. .|++||+.++...... +. + ... +........
T Consensus 76 -------------~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~----------~~--~-~~~--~~~~~~~~~ 127 (257)
T 1g6h_A 76 -------------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGE----------SP--L-NSL--FYKKWIPKE 127 (257)
T ss_dssp -------------HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTS----------CH--H-HHH--HHCSSCCCC
T ss_pred -------------HHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhcc----------Cc--c-ccc--ccccccCCH
Confidence 01122456999999999886 5999999875211000 00 0 000 000000000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ...+.+||||||||++|||||+++|++||||||||+||+.+.+.+.+.|++
T Consensus 128 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 198 (257)
T 1g6h_A 128 EEMVEKAFKILEFLKLSHLY---------DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 198 (257)
T ss_dssp HHHHHHHHHHHHHTTCGGGT---------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhh---------CCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 00123566788887775433 234667999999999999999999999999999999999999999998864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 199 l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (257)
T 1g6h_A 199 LKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 231 (257)
T ss_dssp HHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 489999999998765 68999999999864
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=380.18 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=167.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||++.|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+....
T Consensus 10 ~~l~~~~l~~~~~--~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~--------- 78 (266)
T 4g1u_C 10 ALLEASHLHYHVQ--QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW--------- 78 (266)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTS---------
T ss_pred ceEEEEeEEEEeC--CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcC---------
Confidence 3699999999995 56899999999999999999999999999999999999999999999965432221
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+...+++.++|++|++.+ |..|++||+.++.....
T Consensus 79 --------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~------------------------------ 114 (266)
T 4g1u_C 79 --------------QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG------------------------------ 114 (266)
T ss_dssp --------------CHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC------------------------------
T ss_pred --------------CHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC------------------------------
Confidence 111234569999999987 46799999988532100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS------KPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~------~p~iLiLDEpTSaLD~~se~~ 729 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||++ +|++||||||||+||+.++..
T Consensus 115 ~~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~ 185 (266)
T 4g1u_C 115 GSQDRQALQQVMAQTDCLALAQ---------RDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQH 185 (266)
T ss_dssp STTHHHHHHHHHHHTTCSTTTT---------SBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChhHhc---------CCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHH
Confidence 0112346778888887764433 2356799999999999999999 999999999999999999999
Q ss_pred HHHHHHh---c-CCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---A-GITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ + ++|+|+|||+++.+ .+||+|++|++|+.
T Consensus 186 i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i 226 (266)
T 4g1u_C 186 TLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKL 226 (266)
T ss_dssp HHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEE
Confidence 9988764 3 57999999998765 58999999999865
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-44 Score=379.58 Aligned_cols=209 Identities=24% Similarity=0.334 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ..
T Consensus 24 ~l~i~~l~~~y~--~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~--------- 91 (263)
T 2olj_A 24 MIDVHQLKKSFG--SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AK--------- 91 (263)
T ss_dssp SEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-ST---------
T ss_pred eEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Cc---------
Confidence 699999999995 467999999999999999999999999999999999999999999999654321 00
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
......+++.||||||++.+|.. |++||+.++.... .+. ..
T Consensus 92 -----------~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~-----------~~~----------------~~ 133 (263)
T 2olj_A 92 -----------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKV-----------RKW----------------PR 133 (263)
T ss_dssp -----------TCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-----------SCC----------------CH
T ss_pred -----------cccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHH-----------cCC----------------CH
Confidence 00111234679999999999876 9999998741000 000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|++
T Consensus 134 ~~~~~~~~~~l~~~~L~~~~~---------~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~ 204 (263)
T 2olj_A 134 EKAEAKAMELLDKVGLKDKAH---------AYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ 204 (263)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 001245667888887764433 34567999999999999999999999999999999999999999988864
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ ++||++++|++|+.
T Consensus 205 l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 237 (263)
T 2olj_A 205 LANEGMTMVVVTHEMGFAREVGDRVLFMDGGYI 237 (263)
T ss_dssp HHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 589999999998765 58999999999864
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=393.95 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=167.0
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~yg--~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~---------- 70 (381)
T 3rlf_A 3 SVQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT---------- 70 (381)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC----------
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCC----------
Confidence 489999999995 56799999999999999999999999999999999999999999999965432221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++|||.|+.... +. ..
T Consensus 71 -------------~--~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~------------~~----------------~~ 107 (381)
T 3rlf_A 71 -------------P--PAERGVGMVFQSYALYPHLSVAENMSFGLKLA------------GA----------------KK 107 (381)
T ss_dssp -------------C--GGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT------------TC----------------CH
T ss_pred -------------C--HHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc------------CC----------------CH
Confidence 1 123569999999999965 9999999852110 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+|||||||||+|||||+.+|++||||||||+||+.++..+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~---------r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~ 178 (381)
T 3rlf_A 108 EVINQRVNQVAEVLQLAHLLD---------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178 (381)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------CCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhhc---------CChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 011245778888888765433 34667999999999999999999999999999999999999999888753
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||||++|++|+.
T Consensus 179 l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp HHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 49999999999865 578999999999964
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=373.64 Aligned_cols=204 Identities=26% Similarity=0.355 Sum_probs=165.9
Q ss_pred cEEEeeeEEEcCCCC---ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCcc
Q 040758 498 LLDIEDLTLKTPTSK---ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~---~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
+|+++||+++|+.++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++| .++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~~~~------ 72 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG---ERKK------ 72 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT---EECC------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC---EECc------
Confidence 489999999996223 5799999999999999999999999999999999999999999999954 3331
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccc--ccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP--YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~--~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
.. .+++.||||||+| .++..|++||+.++.... .
T Consensus 73 ----------------~~-~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~-------------------------- 108 (266)
T 2yz2_A 73 ----------------GY-EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-Y-------------------------- 108 (266)
T ss_dssp ----------------HH-HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-C--------------------------
T ss_pred ----------------hH-HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-C--------------------------
Confidence 00 2346699999996 567789999998753210 0
Q ss_pred cCCCCCChHHHHHHHHhcccc--cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLG--YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~--~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
......+++.++++.+++. ...++ ...+||||||||++|||||+++|++||||||||+||+.++..+
T Consensus 109 --~~~~~~~~~~~~l~~~gl~~~~~~~~---------~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 177 (266)
T 2yz2_A 109 --PDRDPVPLVKKAMEFVGLDFDSFKDR---------VPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDL 177 (266)
T ss_dssp --TTSCSHHHHHHHHHHTTCCHHHHTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHcCcCCcccccC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHH
Confidence 0011235677888888776 54332 3567999999999999999999999999999999999999999
Q ss_pred HHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 731 YEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.+.|++ .|+|+|+|||+++.+ .+||++++|++|+.
T Consensus 178 ~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i 216 (266)
T 2yz2_A 178 LRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKK 216 (266)
T ss_dssp HHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEE
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 998864 489999999998766 57999999999864
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-44 Score=377.82 Aligned_cols=220 Identities=21% Similarity=0.263 Sum_probs=166.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..... ...
T Consensus 6 ~l~i~~l~~~y~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~-~~~----- 77 (262)
T 1b0u_A 6 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVR-DKD----- 77 (262)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEE-CTT-----
T ss_pred eEEEeeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccc-ccc-----
Confidence 599999999995 467999999999999999999999999999999999999999999999654321000 000
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.. ..+.. .......++.||||||++.+|.. |++||+.++.... .+. ..
T Consensus 78 ~~-~~~~~---~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~-----------~~~----------------~~ 126 (262)
T 1b0u_A 78 GQ-LKVAD---KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-----------LGL----------------SK 126 (262)
T ss_dssp SS-EEESC---HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT-----------TCC----------------CH
T ss_pred cc-ccccC---hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHh-----------cCC----------------CH
Confidence 00 00000 00011234679999999999876 9999998741000 000 00
Q ss_pred CCChHHHHHHHHhcccccc-cccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYI-LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~-~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.++++.+++... .+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+
T Consensus 127 ~~~~~~~~~~l~~~~L~~~~~~---------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~ 197 (262)
T 1b0u_A 127 HDARERALKYLAKVGIDERAQG---------KYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ 197 (262)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHT---------SCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence 0012456778888877644 33 2356799999999999999999999999999999999999999998875
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ .|+|+|+|||+++.+ .+||+|++|++|+.
T Consensus 198 ~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i 231 (262)
T 1b0u_A 198 QLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231 (262)
T ss_dssp HHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 589999999998765 58999999999864
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=373.27 Aligned_cols=207 Identities=24% Similarity=0.296 Sum_probs=166.3
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++.
T Consensus 13 ~~~l~i~~l~~~y~--~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---~~~------- 80 (256)
T 1vpl_A 13 MGAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGK---NVV------- 80 (256)
T ss_dssp -CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE---ETT-------
T ss_pred CCeEEEEEEEEEEC--CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCE---ECC-------
Confidence 35799999999995 467999999999999999999999999999999999999999999999543 331
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. .....++.||||||++.+|.. |++||+.++.... +.
T Consensus 81 ----------~----~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~------------~~---------------- 118 (256)
T 1vpl_A 81 ----------E----EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY------------AS---------------- 118 (256)
T ss_dssp ----------T----CHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH------------CC----------------
T ss_pred ----------c----cHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc------------CC----------------
Confidence 0 001234669999999999876 9999997731000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 119 ~~~~~~~~~~~~l~~~gL~~~~~---------~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l 189 (256)
T 1vpl_A 119 SSSEIEEMVERATEIAGLGEKIK---------DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189 (256)
T ss_dssp CHHHHHHHHHHHHHHHCCGGGGG---------SBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHH
Confidence 00001235667788887764433 235679999999999999999999999999999999999999999888
Q ss_pred Hh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|++||+++.+ .+||++++|++|+.
T Consensus 190 ~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i 224 (256)
T 1vpl_A 190 KQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 224 (256)
T ss_dssp HHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred HHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEE
Confidence 64 589999999998765 56999999999864
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=386.38 Aligned_cols=204 Identities=24% Similarity=0.347 Sum_probs=167.1
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (359)
T 2yyz_A 3 SIRVVNLKKYFG--KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDI---------- 70 (359)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCC----------
Confidence 489999999995 46799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++||+.|+....... .
T Consensus 71 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------------------------~ 107 (359)
T 2yyz_A 71 -------------P--PKYREVGMVFQNYALYPHMTVFENIAFPLRARRIS----------------------------K 107 (359)
T ss_dssp -------------C--GGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSCSH----------------------------H
T ss_pred -------------C--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------------------------H
Confidence 1 124569999999999964 9999999863211000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....++ ++.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (359)
T 2yyz_A 108 DEVEKRVVEIARKLLIDNLLDR---------KPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKH 178 (359)
T ss_dssp HHTTHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 0012467788888887654433 3567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+. ...||+|++|++|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 179 LQQELGITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 478999999999964
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-43 Score=377.31 Aligned_cols=211 Identities=19% Similarity=0.282 Sum_probs=165.3
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc--ccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE--ETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~--~i~~~~~~~ 574 (788)
.+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+.. ..
T Consensus 20 ~~l~~~~l~~~y~--~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~------- 90 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ--GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGY------- 90 (279)
T ss_dssp EEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---C-------
T ss_pred ceEEEEeEEEEEC--CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccC-------
Confidence 3699999999995 467999999999999999999999999999999999999999999999644321 11
Q ss_pred chhhhcccccccchhcccccCcceEEEEcccccc-CCC--CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhh
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLG--SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENV 651 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~--Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~ 651 (788)
+...+++.||||||++.+ |.. |++||+.++..... +.
T Consensus 91 ----------------~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~-----------~~------------- 130 (279)
T 2ihy_A 91 ----------------SAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSI-----------GV------------- 130 (279)
T ss_dssp ----------------CHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC------------------------------
T ss_pred ----------------CHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhcc-----------cc-------------
Confidence 011235679999999875 444 99999988632100 00
Q ss_pred ccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 652 GRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 652 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.........+++.++++.+++....+ ..+.+||||||||++|||||+.+|++||||||||+||+.+++.+.
T Consensus 131 ~~~~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~ 201 (279)
T 2ihy_A 131 YQDIDDEIRNEAHQLLKLVGMSAKAQ---------QYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201 (279)
T ss_dssp ---CCHHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHH
Confidence 00000001245667788887754432 345679999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEE--EEEecCcchh-hcCCEEEEEccCCC
Q 040758 732 EQIEA---AGITY--ISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~Tv--I~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.|++ +|+|+ |+|||+++.+ ++||+|++|++|+.
T Consensus 202 ~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i 241 (279)
T 2ihy_A 202 SILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQS 241 (279)
T ss_dssp HHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEE
T ss_pred HHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 98864 48999 9999998765 68999999999864
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-43 Score=384.42 Aligned_cols=207 Identities=26% Similarity=0.339 Sum_probs=167.8
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
...|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 12 ~~~l~~~~l~~~y~g-~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~-------- 82 (355)
T 1z47_A 12 SMTIEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDL-------- 82 (355)
T ss_dssp CEEEEEEEEEECCTT-STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTC--------
T ss_pred CceEEEEEEEEEEcC-CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcC--------
Confidence 347999999999942 45799999999999999999999999999999999999999999999954332111
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
...++.||||||++.+|.. |++|||.|+.... +.
T Consensus 83 -----------------~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~------------~~---------------- 117 (355)
T 1z47_A 83 -----------------PPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK------------RV---------------- 117 (355)
T ss_dssp -----------------CGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT------------TC----------------
T ss_pred -----------------ChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc------------CC----------------
Confidence 1224679999999999974 9999998852100 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+++.++++.+++....++ .+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 118 ~~~~~~~~v~~~l~~~gL~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 188 (355)
T 1z47_A 118 PKDEMDARVRELLRFMRLESYANR---------FPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFV 188 (355)
T ss_dssp CHHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCChhHhcC---------CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 000012457788888887654433 35679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 189 ~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 189 RQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp HHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 54 39999999999865 478999999999864
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-43 Score=366.09 Aligned_cols=198 Identities=22% Similarity=0.318 Sum_probs=162.3
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ + +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|. ++.
T Consensus 2 l~~~~l~~~y~--~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~---------- 63 (240)
T 2onk_A 2 FLKVRAEKRLG--N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGA---DIT---------- 63 (240)
T ss_dssp CEEEEEEEEET--T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTE---ECT----------
T ss_pred EEEEEEEEEeC--C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCE---ECC----------
Confidence 78999999995 2 59999999999 999999999999999999999999999999999543 331
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.....++.||||||++.+|.. |++||+.++...... .
T Consensus 64 ------------~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~~------------------------------~ 101 (240)
T 2onk_A 64 ------------PLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVER------------------------------V 101 (240)
T ss_dssp ------------TSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCH------------------------------H
T ss_pred ------------cCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcCC------------------------------c
Confidence 011235679999999999876 999999886321000 0
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+++.++++.+++....+ ..+.+||||||||++|||||+++|++||||||||+||+.+++.+.+.|++
T Consensus 102 ~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l 172 (240)
T 2onk_A 102 ERDRRVREMAEKLGIAHLLD---------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTT---------CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 01245677888887754332 33567999999999999999999999999999999999999999988854
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|++||+++. ..+||++++|++|+.
T Consensus 173 ~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i 205 (240)
T 2onk_A 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205 (240)
T ss_dssp HHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 38999999999875 578999999999864
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-42 Score=384.15 Aligned_cols=204 Identities=26% Similarity=0.362 Sum_probs=161.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 11 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 78 (372)
T 1v43_A 11 EVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 78 (372)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEEC--CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCC----------
Confidence 599999999995 46799999999999999999999999999999999999999999999964432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|. .|++|||.|+....... .
T Consensus 79 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~----------------------------~ 115 (372)
T 1v43_A 79 -------------P--PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFP----------------------------K 115 (372)
T ss_dssp -------------C--GGGGTEEEEEC------CCCHHHHHHTTCC--CCC----------------------------H
T ss_pred -------------C--hhhCcEEEEecCcccCCCCCHHHHHHHHHHhcCCC----------------------------H
Confidence 1 12356999999999986 59999999974211000 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ .++.+||||||||+||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 116 ~~~~~~v~~~l~~~~L~~~~~---------r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 186 (372)
T 1v43_A 116 DEIDKRVRWAAELLQIEELLN---------RYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 186 (372)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 001245778888888765443 34678999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 187 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 187 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 478999999999964
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=384.73 Aligned_cols=204 Identities=27% Similarity=0.397 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~---------- 70 (362)
T 2it1_A 3 EIKLENIVKKFG--NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTEL---------- 70 (362)
T ss_dssp CEEEEEEEEESS--SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred EEEEEeEEEEEC--CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcC----------
Confidence 489999999995 46799999999999999999999999999999999999999999999964432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+ ..+++||||||++.+|.. |++||+.|+.... +. ..
T Consensus 71 -------------~--~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~------------~~----------------~~ 107 (362)
T 2it1_A 71 -------------P--PKDRNVGLVFQNWALYPHMTVYKNIAFPLELR------------KA----------------PR 107 (362)
T ss_dssp -------------C--GGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT------------TC----------------CH
T ss_pred -------------C--HhHCcEEEEecCcccCCCCCHHHHHHHHHHhc------------CC----------------CH
Confidence 1 123569999999999964 9999998852100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++...++ .+.+|||||||||||||||+.+|++||||||||+||+.++..+.+.|++
T Consensus 108 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 178 (362)
T 2it1_A 108 EEIDKKVREVAKMLHIDKLLNR---------YPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKR 178 (362)
T ss_dssp HHHHHHHHHHHHHTTCTTCTTC---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchHhhC---------ChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 0012457788888887654433 3567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 179 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 179 LQKELGITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 39999999999865 578999999999964
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-43 Score=383.83 Aligned_cols=200 Identities=27% Similarity=0.398 Sum_probs=165.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 1 ml~~~~l~~~y~--~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~---------- 67 (348)
T 3d31_A 1 MIEIESLSRKWK--NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDL---------- 67 (348)
T ss_dssp CEEEEEEEEECS--SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred CEEEEEEEEEEC--CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCC----------
Confidence 378999999995 35 99999999999999999999999999999999999999999999954432111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+++||||||++.+|.. |++||+.|+.... +
T Consensus 68 ---------------~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~------------~------------------- 101 (348)
T 3d31_A 68 ---------------SPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK------------K------------------- 101 (348)
T ss_dssp ---------------CHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH------------C-------------------
T ss_pred ---------------chhhCcEEEEecCcccCCCCCHHHHHHHHHHHc------------C-------------------
Confidence 1124569999999999975 9999998852100 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.++++...+ ..+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 102 ~~~~~~v~~~l~~~~L~~~~~---------~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~ 172 (348)
T 3d31_A 102 IKDPKRVLDTARDLKIEHLLD---------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172 (348)
T ss_dssp CCCHHHHHHHHHHTTCTTTTT---------SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence 001256778888888765433 33567999999999999999999999999999999999999999988754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+.+. ..+||+|++|++|+.
T Consensus 173 l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i 206 (348)
T 3d31_A 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (348)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 48999999999864 578999999999964
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=383.81 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=167.4
Q ss_pred cEEEeeeEEEcCCCCcc--ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKAT--LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~--vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+ +++ +|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 3 ~l~i~~l~~~y~--~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~------- 73 (353)
T 1oxx_K 3 RIIVKNVSKVFK--KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG------- 73 (353)
T ss_dssp CEEEEEEEEEEG--GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT-------
T ss_pred EEEEEeEEEEEC--CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccc-------
Confidence 489999999995 456 999999999999999999999999999999999999999999999543321100
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.......+++||||||++.+|.. |++||+.|+.......
T Consensus 74 -------------~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~--------------------------- 113 (353)
T 1oxx_K 74 -------------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS--------------------------- 113 (353)
T ss_dssp -------------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC---------------------------
T ss_pred -------------cccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCC---------------------------
Confidence 00011235679999999999975 9999999863210000
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
.....+++.++++.++++...++ .+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|
T Consensus 114 -~~~~~~~v~~~l~~~~L~~~~~~---------~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 183 (353)
T 1oxx_K 114 -KEEIRKRVEEVAKILDIHHVLNH---------FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALV 183 (353)
T ss_dssp -HHHHHHHHHHHHHHTTCGGGTTS---------CGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcCCchHhcC---------ChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 00012457788888887654433 35679999999999999999999999999999999999999999887
Q ss_pred Hh----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 184 ~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i 219 (353)
T 1oxx_K 184 KEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219 (353)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 54 39999999999865 478999999999864
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-42 Score=361.96 Aligned_cols=197 Identities=24% Similarity=0.308 Sum_probs=161.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 4 ~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------------------ 64 (253)
T 2nq2_C 4 ALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------------------ 64 (253)
T ss_dssp EEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------------------
T ss_pred eEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------------------
Confidence 5999999999962 357999999999999999999999999999999999999999999974
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
++.||||||++.+| ..|++||+.++..... +.. ....
T Consensus 65 ------------------~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-----------~~~-------------~~~~ 102 (253)
T 2nq2_C 65 ------------------YQSIGFVPQFFSSPFAYSVLDIVLMGRSTHI-----------NTF-------------AKPK 102 (253)
T ss_dssp ------------------CSCEEEECSCCCCSSCCBHHHHHHGGGGGGS-----------CTT-------------CCCC
T ss_pred ------------------eccEEEEcCCCccCCCCCHHHHHHHhhhhhc-----------ccc-------------cCCC
Confidence 23599999999888 5699999988521100 000 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....+ ..+.+||||||||++|||||+++|++||||||||+||+.+...+.+.|++
T Consensus 103 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~ 173 (253)
T 2nq2_C 103 SHDYQVAMQALDYLNLTHLAK---------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLID 173 (253)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 011245677888887765433 23567999999999999999999999999999999999999999988864
Q ss_pred ---c-CCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 ---A-GITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ---~-g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+ |+|+|++||+++.+ ++||++++|++|+
T Consensus 174 l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~ 206 (253)
T 2nq2_C 174 LAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN 206 (253)
T ss_dssp HHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe
Confidence 3 89999999998765 7899999999985
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=383.19 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=166.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~--------- 71 (372)
T 1g29_1 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE--------- 71 (372)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG---------
T ss_pred EEEEEeEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcccc---------
Confidence 489999999995 467999999999999999999999999999999999999999999999544321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
........+++||||||++.+|. .|++||+.|+.... +. ..
T Consensus 72 ----------~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~------------~~----------------~~ 113 (372)
T 1g29_1 72 ----------KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR------------KV----------------PR 113 (372)
T ss_dssp ----------GTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT------------TC----------------CH
T ss_pred ----------ccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc------------CC----------------CH
Confidence 00001122467999999999986 59999998852100 00 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++....++ .+.+|||||||||||||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 114 ~~~~~~v~~~l~~~~L~~~~~r---------~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 184 (372)
T 1g29_1 114 QEIDQRVREVAELLGLTELLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (372)
T ss_dssp HHHHHHHHHHHHHHTCGGGTTC---------CGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHhcC---------CcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence 0012456778888887654433 3567999999999999999999999999999999999999999888754
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. ..+||+|++|++|+.
T Consensus 185 l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i 218 (372)
T 1g29_1 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (372)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEE
Confidence 49999999999865 468999999999964
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=362.45 Aligned_cols=196 Identities=25% Similarity=0.304 Sum_probs=162.5
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+..+.
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~---------- 66 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAW---------- 66 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGS----------
T ss_pred EEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcC----------
Confidence 5899999986 5899999999999999999999999999999999999999 9999954332111
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...+++.++||||++.+|.. |++||+.++....
T Consensus 67 -------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-------------------------------- 101 (249)
T 2qi9_C 67 -------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK-------------------------------- 101 (249)
T ss_dssp -------------CHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCSST--------------------------------
T ss_pred -------------CHHHHhceEEEECCCCccCCCCcHHHHHHHhhccC--------------------------------
Confidence 111235679999999998865 9999998863110
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC-------EEEEecCCCCCCHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ-------IVLLDESTSALDEANEAH 729 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~-------iLiLDEpTSaLD~~se~~ 729 (788)
...+++.++++.+++....+ ..+.+||||||||++|||||+++|+ +||||||||+||+.++..
T Consensus 102 -~~~~~~~~~l~~~~l~~~~~---------~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~ 171 (249)
T 2qi9_C 102 -TRTELLNDVAGALALDDKLG---------RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 171 (249)
T ss_dssp -TCHHHHHHHHHHTTCGGGTT---------SBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHH
T ss_pred -CcHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHH
Confidence 01355677888887764433 3456799999999999999999999 999999999999999999
Q ss_pred HHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 730 LYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 730 i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+.+.|++ +|+|+|++||+++.+ .+||++++|++|+.
T Consensus 172 l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 172 LDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9998864 489999999998876 78999999999864
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=365.66 Aligned_cols=210 Identities=24% Similarity=0.323 Sum_probs=158.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+..+..
T Consensus 3 ~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~------- 73 (250)
T 2d2e_A 3 QLEIRDLWASID--GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELS------- 73 (250)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSC-------
T ss_pred eEEEEeEEEEEC--CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCC-------
Confidence 589999999995 46799999999999999999999999999999999999 8999999999654322110
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....+..++||||++.+|.. |++||+.++.... .+.. .
T Consensus 74 ---------------~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----------~~~~--------------~ 113 (250)
T 2d2e_A 74 ---------------PDERARKGLFLAFQYPVEVPGVTIANFLRLALQAK-----------LGRE--------------V 113 (250)
T ss_dssp ---------------HHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHH-----------HTSC--------------C
T ss_pred ---------------HHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhh-----------cccc--------------C
Confidence 000113459999999999875 9999997631100 0000 0
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCC-CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSV-LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~-LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~ 732 (788)
......+++.++++.+++. ...+ ....+ ||||||||++|||||+++|++||||||||+||+.++..+.+
T Consensus 114 ~~~~~~~~~~~~l~~~gl~~~~~~---------~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~ 184 (250)
T 2d2e_A 114 GVAEFWTKVKKALELLDWDESYLS---------RYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVAR 184 (250)
T ss_dssp CHHHHHHHHHHHHHHHTCCGGGGG---------SBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCChhHhc---------CCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHH
Confidence 0000123466778877763 3322 23456 99999999999999999999999999999999999999999
Q ss_pred HHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 733 QIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
.|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 185 ~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i 222 (250)
T 2d2e_A 185 GVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRV 222 (250)
T ss_dssp HHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEE
T ss_pred HHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEE
Confidence 8865 4899999999998765 5 599999999864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-42 Score=363.11 Aligned_cols=215 Identities=25% Similarity=0.316 Sum_probs=162.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCCceEEEeeccCcccccCCCcc
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL--WSDGRGKITFYVKDREETDAHTSDV 574 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl--~~p~~G~I~~~~~~~~~i~~~~~~~ 574 (788)
.+|+++||+|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|.+..+..
T Consensus 19 ~~l~~~~l~~~y~--~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~------ 90 (267)
T 2zu0_C 19 HMLSIKDLHVSVE--DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALS------ 90 (267)
T ss_dssp -CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSC------
T ss_pred ceEEEEeEEEEEC--CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCC------
Confidence 4699999999995 46799999999999999999999999999999999999 5799999999644321110
Q ss_pred chhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 575 DSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
.....+..|+||||++.+|.. |+.||+.++... . ....+. ..
T Consensus 91 ----------------~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~--~------~~~~~~-------------~~ 133 (267)
T 2zu0_C 91 ----------------PEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNA--V------RSYRGQ-------------ET 133 (267)
T ss_dssp ----------------HHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHH--H------HHGGGC-------------CC
T ss_pred ----------------HHHHhhCCEEEEccCccccccccHHHHHHHHHHh--h------hhhhcc-------------cc
Confidence 000113459999999998876 999998653100 0 000000 00
Q ss_pred CCCCCChHHHHHHHHhcccc-cccccCCCccccccCCC-CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSS-VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY 731 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~-~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~ 731 (788)
.......+.+.++++.+++. ... ..... +|||||||||+|||||+++|++||||||||+||+.+++.+.
T Consensus 134 ~~~~~~~~~~~~~l~~~gl~~~~~---------~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~ 204 (267)
T 2zu0_C 134 LDRFDFQDLMEEKIALLKMPEDLL---------TRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVA 204 (267)
T ss_dssp CCHHHHHHHHHHHHHHTTCCTTTT---------TSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCChhHh---------cCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 00000123466778877764 222 22333 59999999999999999999999999999999999999999
Q ss_pred HHHHh---cCCEEEEEecCcchhh-c-CCEEEEEccCCC
Q 040758 732 EQIEA---AGITYISVGHRRTLYD-F-HKRVLRISTVDQ 765 (788)
Q Consensus 732 ~~L~~---~g~TvI~IaHr~~~~~-~-~D~Ilvl~~g~~ 765 (788)
+.|++ .|+|+|+|||+++.+. . ||++++|++|+.
T Consensus 205 ~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 205 DGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp HHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred HHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 99875 4899999999998765 3 899999999864
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=347.12 Aligned_cols=194 Identities=24% Similarity=0.353 Sum_probs=159.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. ++
T Consensus 9 ~~l~~~~ls~~y~--~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~---~~--------- 73 (214)
T 1sgw_A 9 SKLEIRDLSVGYD--K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV---PI--------- 73 (214)
T ss_dssp CEEEEEEEEEESS--S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE---EG---------
T ss_pred ceEEEEEEEEEeC--C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCE---Eh---------
Confidence 4799999999995 4 7999999999999999999999999999999999999999999999532 22
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ..++.|+||||++.+|.. |++||+.++... . + .
T Consensus 74 --------~--------~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~-------------------------~--~-~- 108 (214)
T 1sgw_A 74 --------T--------KVKGKIFFLPEEIIVPRKISVEDYLKAVASL-------------------------Y--G-V- 108 (214)
T ss_dssp --------G--------GGGGGEEEECSSCCCCTTSBHHHHHHHHHHH-------------------------T--T-C-
T ss_pred --------h--------hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHh-------------------------c--C-C-
Confidence 0 124669999999999876 999999774100 0 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.++++.++++.. + ..+.+||||||||++|||||+++|++||||||||+||+.+...+.+.|+
T Consensus 109 -~~~~~~~~~~l~~~gl~~~-~---------~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~ 177 (214)
T 1sgw_A 109 -KVNKNEIMDALESVEVLDL-K---------KKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 177 (214)
T ss_dssp -CCCHHHHHHHHHHTTCCCT-T---------SBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred -chHHHHHHHHHHHcCCCcC-C---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHH
Confidence 1124567788888876543 2 3356799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEc
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
+ .|+|+|++||+++.+ ..||+++.++
T Consensus 178 ~~~~~g~tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 178 EILKEKGIVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHHSEEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEeC
Confidence 4 489999999998765 5688876543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-41 Score=356.91 Aligned_cols=198 Identities=23% Similarity=0.283 Sum_probs=162.4
Q ss_pred cEEEeeeEEEcCCC--CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTS--KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~--~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+++ .+++|+|+||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|. ++.
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~---~~~------- 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGM---EVR------- 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTE---EGG-------
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCE---ECc-------
Confidence 37899999999521 1579999999999 9999999999999999999999999 99999999533 331
Q ss_pred hhhhcccccccchhcccccCcceEE-EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. . .. ++.++ ||||++.+ ..|++||+.++... .
T Consensus 69 -------------~-~-~~-~~~i~~~v~Q~~~l-~~tv~enl~~~~~~----------------------------~-- 101 (263)
T 2pjz_A 69 -------------K-I-RN-YIRYSTNLPEAYEI-GVTVNDIVYLYEEL----------------------------K-- 101 (263)
T ss_dssp -------------G-C-SC-CTTEEECCGGGSCT-TSBHHHHHHHHHHH----------------------------T--
T ss_pred -------------c-h-HH-hhheEEEeCCCCcc-CCcHHHHHHHhhhh----------------------------c--
Confidence 0 0 12 56799 99999998 88999999763100 0
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
....+++.++++.+++. ...+ .++.+||||||||++|||||+++|++||||||||+||+.+++.+.+.
T Consensus 102 --~~~~~~~~~~l~~~gl~~~~~~---------~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 102 --GLDRDLFLEMLKALKLGEEILR---------RKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp --CCCHHHHHHHHHHTTCCGGGGG---------SBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHcCCChhHhc---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence 11245677788887765 4332 34667999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCC-EEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHK-RVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D-~Ilvl~~g~~ 765 (788)
|++...|+|++||+++.+ +.|| ++++|++|+.
T Consensus 171 L~~~~~tviivtHd~~~~~~~~d~~i~~l~~G~i 204 (263)
T 2pjz_A 171 IKEYGKEGILVTHELDMLNLYKEYKAYFLVGNRL 204 (263)
T ss_dssp HHHSCSEEEEEESCGGGGGGCTTSEEEEEETTEE
T ss_pred HHHhcCcEEEEEcCHHHHHHhcCceEEEEECCEE
Confidence 987433999999998765 6899 9999999864
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-41 Score=360.22 Aligned_cols=193 Identities=22% Similarity=0.314 Sum_probs=144.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|.+ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 39 ~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g--------------- 99 (290)
T 2bbs_A 39 DSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 99 (290)
T ss_dssp -----------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---------------
T ss_pred ceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---------------
Confidence 469999999863 4699999999999999999999999999999999999999999999731
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.|+||||++.+|++|++||+. +... .
T Consensus 100 ---------------------~i~~v~Q~~~l~~~tv~enl~-~~~~-~------------------------------- 125 (290)
T 2bbs_A 100 ---------------------RISFCSQNSWIMPGTIKENII-GVSY-D------------------------------- 125 (290)
T ss_dssp ---------------------CEEEECSSCCCCSSBHHHHHH-TTCC-C-------------------------------
T ss_pred ---------------------EEEEEeCCCccCcccHHHHhh-Cccc-c-------------------------------
Confidence 299999999999999999997 4211 0
Q ss_pred CCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
...+.+.++.+++.....+ +.++++. ++.+.+||||||||++|||||+++|++||||||||+||+.++..+.+.+
T Consensus 126 ---~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l 202 (290)
T 2bbs_A 126 ---EYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESC 202 (290)
T ss_dssp ---HHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred ---hHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence 0111122233333222222 2344443 5677899999999999999999999999999999999999999999874
Q ss_pred -Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 -EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++.+..||++++|++|+.
T Consensus 203 l~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i 236 (290)
T 2bbs_A 203 VCKLMANKTRILVTSKMEHLKKADKILILHEGSS 236 (290)
T ss_dssp CCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeE
Confidence 33 58999999999988778999999999864
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=333.09 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=152.9
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|++.||+|++||++||+||||||||||+|+|+|+++|++|+|.++
T Consensus 268 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~---------------- 328 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPE---------------- 328 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESS----------------
T ss_pred ceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC----------------
Confidence 36899999999952 56888999999999999999999999999999999999999999852
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...++|+||++.. +..|+++|+.+.....
T Consensus 329 -------------------~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------------------------------- 358 (538)
T 3ozx_A 329 -------------------KQILSYKPQRIFPNYDGTVQQYLENASKDA------------------------------- 358 (538)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHCSST-------------------------------
T ss_pred -------------------CeeeEeechhcccccCCCHHHHHHHhhhhc-------------------------------
Confidence 1248999999765 3679999986521100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.......+.++++.+++.... ...+.+|||||||||+|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 359 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~ 429 (538)
T 3ozx_A 359 LSTSSWFFEEVTKRLNLHRLL---------ESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIK 429 (538)
T ss_dssp TCTTSHHHHHTTTTTTGGGCT---------TSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHcCCHHHh---------cCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 000113345556666655332 33467799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
+ .|+|+|+|||+++.+ .+||||++|+++
T Consensus 430 ~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~ 462 (538)
T 3ozx_A 430 RVTRERKAVTFIIDHDLSIHDYIADRIIVFKGE 462 (538)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 4 489999999998765 579999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-34 Score=345.27 Aligned_cols=235 Identities=17% Similarity=0.277 Sum_probs=160.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+++||+|+|+++++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-------------- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-------------- 735 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT--------------
T ss_pred ceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc--------------
Confidence 369999999999743467999999999999999999999999999999999999999999998421
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-----CCCCHHHHhcCCCCc-cccchhhHHH-----------------
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-----VLGSLRQQLIYPTWT-EEVKPASDAA----------------- 633 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-----f~~Ti~eNi~~~~~~-~~~~~~~~aa----------------- 633 (788)
..|+|++|++.. ++.|+++++.+.-.. .+.+....+.
T Consensus 736 --------------------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~ 795 (986)
T 2iw3_A 736 --------------------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKI 795 (986)
T ss_dssp --------------------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEE
T ss_pred --------------------cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhccccc
Confidence 126777776531 234666665421000 0000000000
Q ss_pred -----------------------------HhcCC----ccchhhh-----------hhh----------h--hhccCCCC
Q 040758 634 -----------------------------KSAGL----VPFLTSA-----------QKL----------E--NVGRKSSK 657 (788)
Q Consensus 634 -----------------------------~~~~~----~~~i~~~-----------~~~----------~--~~~~~~~~ 657 (788)
++..+ .+.++.. .++ + ..+ ....
T Consensus 796 ~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g-~~~~ 874 (986)
T 2iw3_A 796 EGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASG-QFRP 874 (986)
T ss_dssp TTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTT-CCCC
T ss_pred ccchhhhhhhhhhhhhcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhc-ccch
Confidence 00000 0000000 000 0 000 0112
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA 737 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~ 737 (788)
...+++.+.|+.+++..... ....+.+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++.
T Consensus 875 ~~~~~i~~~Le~lGL~~~~~-------~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~ 947 (986)
T 2iw3_A 875 LTRKEIEEHCSMLGLDPEIV-------SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947 (986)
T ss_dssp CCHHHHHHHHHHTTCCHHHH-------HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHcCCCchhh-------cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh
Confidence 23466788888887753110 12235679999999999999999999999999999999999999999999988
Q ss_pred CCEEEEEecCcchh-hcCCEEEEEccCCCCCCCCCeE
Q 040758 738 GITYISVGHRRTLY-DFHKRVLRISTVDQNSSQSNWK 773 (788)
Q Consensus 738 g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~~~~~~~~~ 773 (788)
+.|+|+|||+++.+ .+||++++|++|+....+.||.
T Consensus 948 g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~~ 984 (986)
T 2iw3_A 948 EGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWV 984 (986)
T ss_dssp SSEEEEECSCHHHHTTTCCEEECCBTTBCCC------
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCccc
Confidence 88999999998765 6899999999999877677884
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-34 Score=331.26 Aligned_cols=186 Identities=24% Similarity=0.239 Sum_probs=150.5
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 286 ~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----------------- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----------------- 345 (538)
T ss_dssp EEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----------------
T ss_pred eEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----------------
Confidence 36999999999952 4689999999999999999999999999999999999999999964
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
...||||||++.. +..|+.||+...... ..
T Consensus 346 -------------------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~--------------------------~~---- 376 (538)
T 1yqt_A 346 -------------------DLTVAYKPQYIKADYEGTVYELLSKIDAS--------------------------KL---- 376 (538)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH--------------------------HH----
T ss_pred -------------------CceEEEEecCCcCCCCCcHHHHHHhhhcc--------------------------CC----
Confidence 1249999999876 456998877431000 00
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++.... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 377 --~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~ 445 (538)
T 1yqt_A 377 --NSNFYKTELLKPLGIIDLY---------DREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 445 (538)
T ss_dssp --TCHHHHHHTTTTTTCGGGT---------TSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 0123345556655554322 33466799999999999999999999999999999999999999999886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 446 ~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~ 477 (538)
T 1yqt_A 446 HLMEKNEKTALVVEHDVLMIDYVSDRLMVFEG 477 (538)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4 499999999998765 58999999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=332.93 Aligned_cols=186 Identities=24% Similarity=0.249 Sum_probs=152.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ ..|+++||+|++||++||+||||||||||+|+|+|+++|++|+|.+
T Consensus 356 ~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----------------- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----------------- 415 (607)
T ss_dssp EEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----------------
T ss_pred eEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----------------
Confidence 36999999999952 4689999999999999999999999999999999999999999964
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
+..|||+||++.+ ++.|+.||+.+.... . .
T Consensus 416 -------------------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~-~----------------------~------- 446 (607)
T 3bk7_A 416 -------------------DLTVAYKPQYIKAEYEGTVYELLSKIDSS-K----------------------L------- 446 (607)
T ss_dssp -------------------CCCEEEECSSCCCCCSSBHHHHHHHHHHH-H----------------------H-------
T ss_pred -------------------eeEEEEEecCccCCCCCcHHHHHHhhhcc-C----------------------C-------
Confidence 1249999999876 456998887541000 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...+.+.++++.+++....+ ....+|||||||||+|||||+++|++|||||||++||+.+...+.+.|+
T Consensus 447 --~~~~~~~~~l~~~~l~~~~~---------~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~ 515 (607)
T 3bk7_A 447 --NSNFYKTELLKPLGIIDLYD---------RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIR 515 (607)
T ss_dssp --HCHHHHHHTHHHHTCTTTTT---------SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCCchHhc---------CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 01234556677776654322 3356799999999999999999999999999999999999999998886
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 516 ~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~ 547 (607)
T 3bk7_A 516 HLMEKNEKTALVVEHDVLMIDYVSDRLIVFEG 547 (607)
T ss_dssp HHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 4 489999999998765 57999999985
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=331.77 Aligned_cols=206 Identities=20% Similarity=0.250 Sum_probs=149.8
Q ss_pred cEEE--------eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccccc
Q 040758 498 LLDI--------EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDA 569 (788)
Q Consensus 498 ~I~~--------~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~ 569 (788)
.|++ +||+++|++ ...+|+|+| +|++||+++|+||||||||||+|+|+|+++|++|++..+ ...+
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~---~~~~-- 155 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGV-NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS---WDNV-- 155 (607)
T ss_dssp CCEEEEECTTGGGSEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCC---HHHH--
T ss_pred eEEEecCCccccCCeEEEECC-CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccc---cchh--
Confidence 4888 999999963 225899999 999999999999999999999999999999999985210 0000
Q ss_pred CCCccchhhhcccccccchhcccccCcceEEEEccccc----cCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 570 HTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY----MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~----lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
....++.++.... ......+..+++++|... ++.+|+.||+....
T Consensus 156 ------~~~~~G~~~~~~~-~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~------------------------ 204 (607)
T 3bk7_A 156 ------IRAFRGNELQNYF-ERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD------------------------ 204 (607)
T ss_dssp ------HHHTTTSTHHHHH-HHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC------------------------
T ss_pred ------hheeCCEehhhhh-hhhhhhhcceEEeechhhhchhhccccHHHHhhhhH------------------------
Confidence 0001111111000 000012345888888753 33458888874210
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA 725 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~ 725 (788)
..+.+.++++.+++....+ ....+||||||||++|||||+++|++||||||||+||+.
T Consensus 205 -------------~~~~~~~~L~~lgL~~~~~---------~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~ 262 (607)
T 3bk7_A 205 -------------EVGKFEEVVKELELENVLD---------RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIR 262 (607)
T ss_dssp -------------CSSCHHHHHHHTTCTTGGG---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred -------------HHHHHHHHHHHcCCCchhC---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence 0123456777777754433 235679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh---cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 726 NEAHLYEQIEA---AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 726 se~~i~~~L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
+...+.+.|++ .|+|+|+|||+++.+ ..||+|++|+++
T Consensus 263 ~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 263 QRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999888864 499999999998765 579999999864
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=329.06 Aligned_cols=205 Identities=20% Similarity=0.230 Sum_probs=145.6
Q ss_pred EEE-eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 499 LDI-EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~-~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.++ +||+++|++ ...+|+|+| +|++||++||+||||||||||+|+|+|+++|++|++... ...+ ..
T Consensus 21 ~~~~~~ls~~yg~-~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~---~~~~--------~~ 87 (538)
T 1yqt_A 21 EQLEEDCVHRYGV-NAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDS---WDGV--------IR 87 (538)
T ss_dssp ---CCCEEEECST-TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS---HHHH--------HH
T ss_pred hhHhcCcEEEECC-ccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcc---hhhh--------HH
Confidence 345 589999963 225899999 999999999999999999999999999999999985100 0000 00
Q ss_pred hhcccccccchhcccccCcceEEEEccccccC----CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV----LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf----~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..++.++.... ......+..+++++|+..++ .+|+.+|+....
T Consensus 88 ~~~g~~~~~~~-~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-------------------------------- 134 (538)
T 1yqt_A 88 AFRGNELQNYF-EKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-------------------------------- 134 (538)
T ss_dssp HTTTSTHHHHH-HHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC--------------------------------
T ss_pred hhCCccHHHHH-HHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh--------------------------------
Confidence 00111111000 00011234588999976543 246776653100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..+++.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+...+.+.
T Consensus 135 -----~~~~~~~~l~~lgl~~~~~---------~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~ 200 (538)
T 1yqt_A 135 -----ETGKLEEVVKALELENVLE---------REIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARA 200 (538)
T ss_dssp -----SSSCHHHHHHHTTCTTTTT---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCChhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHH
Confidence 0123556777777654332 23567999999999999999999999999999999999999999888
Q ss_pred HHh---cCCEEEEEecCcchh-hcCCEEEEEccC
Q 040758 734 IEA---AGITYISVGHRRTLY-DFHKRVLRISTV 763 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g 763 (788)
|++ .|+|+|+||||++.+ ..||+|++|++|
T Consensus 201 L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 201 IRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 864 599999999998765 579999999865
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-32 Score=319.60 Aligned_cols=183 Identities=23% Similarity=0.258 Sum_probs=146.0
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCC-----CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEK-----EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~G-----e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
++++|+|++ ...+++|+||++++| |+++|+||||||||||+++|+|+.+|++|+..
T Consensus 350 ~~~~~~y~~-~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~------------------ 410 (608)
T 3j16_B 350 ASRAFSYPS-LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI------------------ 410 (608)
T ss_dssp SSSCCEECC-EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC------------------
T ss_pred cceeEEecC-cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc------------------
Confidence 678889974 446899999999999 88999999999999999999999999999631
Q ss_pred hhhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
.+..++|+||+... |..|+++|+......
T Consensus 411 ------------------~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~-------------------------------- 440 (608)
T 3j16_B 411 ------------------PKLNVSMKPQKIAPKFPGTVRQLFFKKIRG-------------------------------- 440 (608)
T ss_dssp ------------------CSCCEEEECSSCCCCCCSBHHHHHHHHCSS--------------------------------
T ss_pred ------------------cCCcEEEecccccccCCccHHHHHHHHhhc--------------------------------
Confidence 01349999999754 567999987421100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+...++++.+++.... .....+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~---------~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~ 511 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDII---------DQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIR 511 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTS---------SSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 001123345567777665432 33467899999999999999999999999999999999999999988875
Q ss_pred h----cCCEEEEEecCcchh-hcCCEEEEEcc
Q 040758 736 A----AGITYISVGHRRTLY-DFHKRVLRIST 762 (788)
Q Consensus 736 ~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~ 762 (788)
+ .|+|+|+|||+++.+ .+||||++|++
T Consensus 512 ~l~~~~g~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 512 RFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp HHHHHHTCEEEEECSCHHHHHHHCSEEEECEE
T ss_pred HHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 4 499999999998765 57999999986
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=317.56 Aligned_cols=186 Identities=23% Similarity=0.296 Sum_probs=148.4
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|...|++++|+ ++.+|+|+||+|++||+++|+||||||||||+|+|+| |+| + |.+..
T Consensus 434 ~~L~~~~ls~~yg--~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~---g~~~~-------- 492 (986)
T 2iw3_A 434 EDLCNCEFSLAYG--AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--D---GFPTQ-------- 492 (986)
T ss_dssp CEEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--T---TCCCT--------
T ss_pred ceeEEeeEEEEEC--CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--C---CCccc--------
Confidence 3688889999995 4679999999999999999999999999999999995 544 1 11110
Q ss_pred hhhcccccccchhcccccCcceEEEEcccc-ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRP-YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~-~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
. +..++|++|++ .++ ..|+.||+.+...
T Consensus 493 ----------------~--~~~~~~v~q~~~~~~~~ltv~e~l~~~~~-------------------------------- 522 (986)
T 2iw3_A 493 ----------------E--ECRTVYVEHDIDGTHSDTSVLDFVFESGV-------------------------------- 522 (986)
T ss_dssp ----------------T--TSCEEETTCCCCCCCTTSBHHHHHHTTCS--------------------------------
T ss_pred ----------------c--ceeEEEEcccccccccCCcHHHHHHHhhc--------------------------------
Confidence 0 12378999985 444 4599999965100
Q ss_pred CCCCChHHHHHHHHhcccc-cccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLG-YILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~-~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.. .+++.+.|+.+++. ...+ ....+||||||||++|||||+.+|++|||||||++||+.+...+.+.
T Consensus 523 --~~-~~~v~~~L~~lgL~~~~~~---------~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 523 --GT-KEAIKDKLIEFGFTDEMIA---------MPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp --SC-HHHHHHHHHHTTCCHHHHH---------SBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred --CH-HHHHHHHHHHcCCChhhhc---------CCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 00 34567778887763 2222 23456999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 734 IEAAGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
|++.|+|+|+|||+++.+ ..||+|++|++|+.
T Consensus 591 L~~~g~tvIivSHdl~~l~~~adrii~L~~G~i 623 (986)
T 2iw3_A 591 LNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623 (986)
T ss_dssp HHHSCSEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred HHhCCCEEEEEECCHHHHHHhCCEEEEEECCee
Confidence 988899999999998766 67999999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-31 Score=316.98 Aligned_cols=201 Identities=20% Similarity=0.233 Sum_probs=118.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCCceEEEeeccCcccccCC
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLL---------------------RAMAGLWSDGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl---------------------~lL~gl~~p~~G~I~~~~~~~~~i~~~~ 571 (788)
..+|+|+||+|++||++||+||||||||||+ +++.|+..|+.|.|...+ ..+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~---~~i~--- 104 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLS---PAIS--- 104 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCC---CEEE---
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccc---cceE---
Confidence 4689999999999999999999999999998 899999999966554210 0110
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEcccccc--------------------CCCCHHHHhcCCCCccccchhhH
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYM--------------------VLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l--------------------f~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
+++.+.. ...+..+++|+|.+.+ ...|++||+.+..... ......
T Consensus 105 -------~~~~~~~-------~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~-~~~~~~ 169 (670)
T 3ux8_A 105 -------IDQKTTS-------RNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLE-LTEKEA 169 (670)
T ss_dssp -------ESSCC------------CCBHHHHTTCC-------------------------CC------------------
T ss_pred -------ecCchhh-------ccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccc-cchhhh
Confidence 0000000 0112334455444332 2347888887632110 000000
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
..... ......+..+.++.+++++.. ......+|||||||||+|||||+.+|+
T Consensus 170 ------------------~~~~~-~~~~~~~~~~~l~~~gL~~~~--------~~~~~~~LSGGe~QRv~iArAL~~~p~ 222 (670)
T 3ux8_A 170 ------------------QIARL-ILREIRDRLGFLQNVGLDYLT--------LSRSAGTLSGGEAQRIRLATQIGSRLT 222 (670)
T ss_dssp ----------------------------CHHHHHHHHHTTCTTCC--------TTCBGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred ------------------HHHHH-HHHHHHHHHHHHHHcCCchhh--------hcCCcccCCHHHHHHHHHHHHHhhCCC
Confidence 00000 000011223456666665321 123456799999999999999999998
Q ss_pred --EEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 712 --IVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 712 --iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
+||||||||+||+.+...+.+.|++ .|.|+|+|||+++.+..||+|++|.
T Consensus 223 ~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ii~l~ 277 (670)
T 3ux8_A 223 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLAADYLIDIG 277 (670)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHHHHHCSEEEEEC
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEec
Confidence 9999999999999999999988754 6999999999998888899999993
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-31 Score=304.54 Aligned_cols=204 Identities=16% Similarity=0.169 Sum_probs=135.9
Q ss_pred eeEEEcCCCCccceeeeeEEEe-CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcc
Q 040758 503 DLTLKTPTSKATLVRDLSLVIN-EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNS 581 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~-~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~ 581 (788)
+++.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+|... .+.+- ....+++
T Consensus 4 ~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~--~~~~~-------~~~~~~g 71 (538)
T 3ozx_A 4 EVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK--VGKDE-------VLKRFRG 71 (538)
T ss_dssp CEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSC--CCHHH-------HHHHHTT
T ss_pred CCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccc--cchhh-------HHhhcCC
Confidence 456788542 3455555554 999999999999999999999999999999998210 00000 0000111
Q ss_pred cccccchhc---ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCC
Q 040758 582 QNMNGELTR---SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKP 658 (788)
Q Consensus 582 ~~~~~~~~~---~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~ 658 (788)
.++...... ........+.++.|.+.++.+|+++++....
T Consensus 72 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------------------------------------- 114 (538)
T 3ozx_A 72 KEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID------------------------------------- 114 (538)
T ss_dssp STTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-------------------------------------
T ss_pred eeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch-------------------------------------
Confidence 111100000 0000111233444445555667766553110
Q ss_pred ChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 659 STDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 659 ~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
..+.+.++++.+++....+ ....+|||||||||+|||||+.+|++||||||||+||+.+...+.+.|++
T Consensus 115 ~~~~~~~~l~~l~l~~~~~---------~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~ 185 (538)
T 3ozx_A 115 ERGKKDEVKELLNMTNLWN---------KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL 185 (538)
T ss_dssp CSSCHHHHHHHTTCGGGTT---------SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHcCCchhhc---------CChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh
Confidence 1123445667766654332 23567999999999999999999999999999999999999999988875
Q ss_pred cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 737 AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 737 ~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
.|+|+|+||||++.+ ..||+|++|++|.
T Consensus 186 ~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 186 KNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp TTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred CCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 499999999998765 5799999998753
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-31 Score=306.42 Aligned_cols=206 Identities=19% Similarity=0.207 Sum_probs=136.0
Q ss_pred eeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhccc
Q 040758 503 DLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQ 582 (788)
Q Consensus 503 nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~ 582 (788)
|++++|+. ....|++++ ++++||++||+||||||||||+|+|+|+++|++|+|... . ... ......++.
T Consensus 82 ~~~~~Y~~-~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~--~--~~~-----~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSA-NSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDP--P--EWQ-----EIIKYFRGS 150 (608)
T ss_dssp TEEEECST-TSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCS--S--CHH-----HHHHHTTTS
T ss_pred CeEEEECC-CceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecc--c--chh-----hhhheecCh
Confidence 56788864 345678877 699999999999999999999999999999999998310 0 000 000000000
Q ss_pred ccccchhcccccCcceEEEEccccccCC----C---CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 583 NMNGELTRSMNRNSRGVFFLPQRPYMVL----G---SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 583 ~~~~~~~~~~~~~r~~i~~v~Q~~~lf~----~---Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++........ .......+.+|....+. + ++.+++. . .
T Consensus 151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~--------------------------------~---~ 194 (608)
T 3j16_B 151 ELQNYFTKML-EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLK--------------------------------L---R 194 (608)
T ss_dssp THHHHHHHHH-HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHH--------------------------------H---H
T ss_pred hhhhhhhHHH-HHhhhhhhchhhhhhhhhhhcchhhHHHHHHh--------------------------------h---h
Confidence 0000000000 00001223333221100 0 1111110 0 0
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.++++.+++....+ ....+||||||||++|||||+++|++||||||||+||+.+...+.+.++
T Consensus 195 ~~~~~~~~~~~l~~~gl~~~~~---------~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~ 265 (608)
T 3j16_B 195 MEKSPEDVKRYIKILQLENVLK---------RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265 (608)
T ss_dssp CCSCHHHHHHHHHHHTCTGGGG---------SCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCcchhC---------CChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHH
Confidence 1123456778888888765433 3467799999999999999999999999999999999999999998886
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVD 764 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~ 764 (788)
+ .|+|+|+||||++.+ ..||+|++|++|.
T Consensus 266 ~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 266 SLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp GGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 4 589999999998765 5799999998653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-30 Score=302.78 Aligned_cols=91 Identities=26% Similarity=0.383 Sum_probs=76.3
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
+..+.++.+++.+. ..+..+.+|||||||||+|||||+++| ++|||||||++||+.+...+.+.|++
T Consensus 522 ~~~~~l~~~~l~~~--------~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~ 593 (670)
T 3ux8_A 522 RKLETLYDVGLGYM--------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 593 (670)
T ss_dssp HHHHHHHHTTCTTS--------BTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCchh--------hccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Confidence 44566666665421 123456789999999999999999887 49999999999999999999988764
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEE
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.|+|+|+|||+++.+..||+|++|
T Consensus 594 ~~g~tvi~vtHd~~~~~~~d~i~~l 618 (670)
T 3ux8_A 594 DNGDTVLVIEHNLDVIKTADYIIDL 618 (670)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred HCCCEEEEEeCCHHHHHhCCEEEEe
Confidence 599999999999888889999999
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-31 Score=297.82 Aligned_cols=188 Identities=19% Similarity=0.175 Sum_probs=143.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-e-EEEeeccCcccccCCCc
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-K-ITFYVKDREETDAHTSD 573 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~-I~~~~~~~~~i~~~~~~ 573 (788)
.++++++||+|+|+ ++||++++|++++|+||||||||||+|+|+|++.|++| + |.+|| +
T Consensus 116 ~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg----~------- 176 (460)
T 2npi_A 116 HTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL----D------- 176 (460)
T ss_dssp CTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC----C-------
T ss_pred cchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC----C-------
Confidence 45688888888883 79999999999999999999999999999999999999 9 99853 0
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCC----CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhh
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL----GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLE 649 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~----~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~ 649 (788)
.++.+++|||++.+|. .|++||+ |+.....-.
T Consensus 177 ---------------------~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---------------------- 212 (460)
T 2npi_A 177 ---------------------PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA---------------------- 212 (460)
T ss_dssp ---------------------TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC----------------------
T ss_pred ---------------------ccCCeeeeccchhhcccccccchhhhh-cccccccCc----------------------
Confidence 1456899999986543 4899998 653210000
Q ss_pred hhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHH--HccCCCE----EEEec-CCCCC
Q 040758 650 NVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARL--LLSKPQI----VLLDE-STSAL 722 (788)
Q Consensus 650 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARA--Ll~~p~i----LiLDE-pTSaL 722 (788)
...+.+.++++.+ |++...+ ..+||||||||++|||| |+.+|++ ||||| ||++|
T Consensus 213 --------~~~~~~~~ll~~~----------gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~L 273 (460)
T 2npi_A 213 --------TLLHNKQPMVKNF----------GLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQL 273 (460)
T ss_dssp --------CSSCCBCCEECCC----------CSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGS
T ss_pred --------chHHHHHHHHHHh----------CCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCccccc
Confidence 0000001112222 2222222 56799999999999999 9999999 99999 99999
Q ss_pred CHHHHHHHHHHHHhcCCEEEEEecCcc------hh-hcCCE-----EEEEc-cCCCC
Q 040758 723 DEANEAHLYEQIEAAGITYISVGHRRT------LY-DFHKR-----VLRIS-TVDQN 766 (788)
Q Consensus 723 D~~se~~i~~~L~~~g~TvI~IaHr~~------~~-~~~D~-----Ilvl~-~g~~~ 766 (788)
|+. ...+.+.+++.++|+|+|+|+.+ .+ ++||+ |++|+ +|+..
T Consensus 274 D~~-~~~l~~l~~~~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv 329 (460)
T 2npi_A 274 DEN-LAELHHIIEKLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS 329 (460)
T ss_dssp CSS-CHHHHHHHHHTTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC
T ss_pred Chh-HHHHHHHHHHhCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE
Confidence 999 77777777777999999999976 33 68999 99999 88754
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-31 Score=284.20 Aligned_cols=156 Identities=19% Similarity=0.291 Sum_probs=125.7
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|+++||+|+|+ .++|+|+||+|++|++++||||||||||||+++|+|++ +|+|.
T Consensus 100 ~~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------ 155 (305)
T 2v9p_A 100 TFFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------ 155 (305)
T ss_dssp HHHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE------------------
T ss_pred CeEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE------------------
Confidence 3589999999995 57999999999999999999999999999999999999 89884
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHH-HhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ-QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~e-Ni~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
++++|++.+|.+|+++ ||.|+. ..+
T Consensus 156 -----------------------~~v~q~~~lf~~ti~~~ni~~~~-~~~------------------------------ 181 (305)
T 2v9p_A 156 -----------------------SFANHKSHFWLASLADTRAALVD-DAT------------------------------ 181 (305)
T ss_dssp -----------------------CGGGTTSGGGGGGGTTCSCEEEE-EEC------------------------------
T ss_pred -----------------------EEecCccccccccHHHHhhccCc-ccc------------------------------
Confidence 3478999999999997 998851 100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
+.+.+.++.+ + ++|++ |..|||||||| ||||+++|+||| ||+||+.++..+..
T Consensus 182 -----~~~~~~i~~~-L------~~gld-----g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~--- 234 (305)
T 2v9p_A 182 -----HACWRYFDTY-L------RNALD-----GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY--- 234 (305)
T ss_dssp -----HHHHHHHHHT-T------TGGGG-----TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---
T ss_pred -----HHHHHHHHHH-h------HccCC-----ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---
Confidence 0122222221 1 13444 67899999999 999999999999 99999999998862
Q ss_pred hcCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 736 AAGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 736 ~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
++||+++++.||+| +|++|+..
T Consensus 235 --------ltH~~~~~~~aD~i-vl~~G~iv 256 (305)
T 2v9p_A 235 --------LHSRVQTFRFEQPC-TDESGEQP 256 (305)
T ss_dssp --------GTTTEEEEECCCCC-CCC---CC
T ss_pred --------HhCCHHHHHhCCEE-EEeCCEEE
Confidence 29999999999999 99999764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=283.24 Aligned_cols=93 Identities=27% Similarity=0.383 Sum_probs=80.6
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
.+..+.|+.+++++. ..+..+.+|||||||||+|||||+++| ++|||||||+|||+.+++.+++.|++
T Consensus 783 ~~~~~~L~~vGL~~~--------~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L 854 (916)
T 3pih_A 783 KRTLQVLHDVGLGYV--------KLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL 854 (916)
T ss_dssp HHHHHHHHHTTGGGS--------BTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchh--------hccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 456677888877542 235667889999999999999999876 79999999999999999999998864
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|+|++++++.||+|++|.
T Consensus 855 ~~~G~TVIvI~HdL~~i~~ADrIivLg 881 (916)
T 3pih_A 855 VDRGNTVIVIEHNLDVIKNADHIIDLG 881 (916)
T ss_dssp HHTTCEEEEECCCHHHHTTCSEEEEEE
T ss_pred HhcCCEEEEEeCCHHHHHhCCEEEEec
Confidence 6999999999999998999999994
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-27 Score=267.24 Aligned_cols=70 Identities=19% Similarity=0.183 Sum_probs=66.8
Q ss_pred CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 692 LSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|++ +|+|+|+|||+++++..||++++|+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~ 369 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVE 369 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEE
Confidence 7999999999999999999 99999999999999999999999986 4899999999999888999999993
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=276.23 Aligned_cols=93 Identities=32% Similarity=0.389 Sum_probs=79.2
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSK---PQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~---p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
+++.+.|+.+++.+. ..+....+|||||||||+|||+|+++ |++|||||||++||+.+.+.+.+.|++
T Consensus 708 ~~~~~~L~~~gL~~~--------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYL--------RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTS--------BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcc--------cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 346677888777642 12344677999999999999999996 799999999999999999999888754
Q ss_pred --cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 --AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 --~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|||+|||+++.++.||+|++|.
T Consensus 780 ~~~G~tVIvisHdl~~i~~aDrii~L~ 806 (842)
T 2vf7_A 780 VDAGNTVIAVEHKMQVVAASDWVLDIG 806 (842)
T ss_dssp HHTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred HhCCCEEEEEcCCHHHHHhCCEEEEEC
Confidence 6999999999998888999999994
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.1e-26 Score=274.10 Aligned_cols=92 Identities=26% Similarity=0.380 Sum_probs=77.6
Q ss_pred HHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHh--
Q 040758 662 DLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP---QIVLLDESTSALDEANEAHLYEQIEA-- 736 (788)
Q Consensus 662 ~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p---~iLiLDEpTSaLD~~se~~i~~~L~~-- 736 (788)
+..+.|+.+++.+. ..+....+|||||||||+|||+|+++| ++|||||||++||+.+...+.+.|++
T Consensus 824 ~~~~~L~~~gL~~~--------~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~ 895 (972)
T 2r6f_A 824 RKLETLYDVGLGYM--------KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV 895 (972)
T ss_dssp HHHHHHHHTTCSSS--------BTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcc--------cccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
Confidence 34567777776541 123446779999999999999999875 99999999999999999999988764
Q ss_pred -cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 737 -AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 737 -~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.|.|+|+|||+++.++.||+|++|.
T Consensus 896 ~~G~TVIvisHdl~~i~~aDrIivL~ 921 (972)
T 2r6f_A 896 DNGDTVLVIEHNLDVIKTADYIIDLG 921 (972)
T ss_dssp HTTCEEEEECCCHHHHTTCSEEEEEC
T ss_pred hCCCEEEEEcCCHHHHHhCCEEEEEc
Confidence 6999999999998888999999994
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.9e-27 Score=238.62 Aligned_cols=157 Identities=20% Similarity=0.175 Sum_probs=100.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|... ++. .+
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~-----~~~---------------------~~ 60 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRI-----ILT---------------------RP 60 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEE-----EEE---------------------EC
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeE-----Eec---------------------CC
Confidence 45789996 89999999999999999999999999 9999999421 110 01
Q ss_pred cccCcceEEEEccccccCCCCHHHHh-cCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQL-IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi-~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
....++.+|||||++ +||+ .+.... .. .+.. ....+.+.+.++.
T Consensus 61 ~~~~~~~ig~v~q~~-------~enl~~~~~~~------~~------------------~~~~---~~~~~~~~~~l~~- 105 (208)
T 3b85_A 61 AVEAGEKLGFLPGTL-------NEKIDPYLRPL------HD------------------ALRD---MVEPEVIPKLMEA- 105 (208)
T ss_dssp SCCTTCCCCSSCC-------------CTTTHHH------HH------------------HHTT---TSCTTHHHHHHHT-
T ss_pred chhhhcceEEecCCH-------HHHHHHHHHHH------HH------------------HHHH---hccHHHHHHHHHh-
Confidence 113456799999987 6777 442100 00 0000 0011234444431
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
.| |||||++|||||+.+|++||||||||+ ++..+.+.|++ .|+|+| +||++
T Consensus 106 --------------------gl--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~ 158 (208)
T 3b85_A 106 --------------------GI--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDI 158 (208)
T ss_dssp --------------------TS--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC-
T ss_pred --------------------CC--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCH
Confidence 13 999999999999999999999999999 77788887765 588999 99998
Q ss_pred chhhcCCEEEEEccCC
Q 040758 749 TLYDFHKRVLRISTVD 764 (788)
Q Consensus 749 ~~~~~~D~Ilvl~~g~ 764 (788)
+.++ ++..+++|.
T Consensus 159 ~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 159 TQVD---LPGGQKSGL 171 (208)
T ss_dssp --------------CC
T ss_pred HHHh---CcCCCCCcH
Confidence 7554 445566764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.1e-26 Score=224.25 Aligned_cols=69 Identities=13% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------HHHHHHHH---hcCCEEEEEecCcc
Q 040758 689 SSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE----------------AHLYEQIE---AAGITYISVGHRRT 749 (788)
Q Consensus 689 g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se----------------~~i~~~L~---~~g~TvI~IaHr~~ 749 (788)
....|||||||++||||+..+|++|+|||||++||+.++ ..+.+.++ ++|.|+|+|||+++
T Consensus 81 ~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~ 160 (171)
T 4gp7_A 81 TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE 160 (171)
T ss_dssp CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH
Confidence 345799999999999999999999999999999999944 66777643 46999999999998
Q ss_pred hhhcCCEE
Q 040758 750 LYDFHKRV 757 (788)
Q Consensus 750 ~~~~~D~I 757 (788)
.+..++++
T Consensus 161 ~~~~~~~~ 168 (171)
T 4gp7_A 161 EVEEVVFE 168 (171)
T ss_dssp HHHHEEEE
T ss_pred Hhhhhhhc
Confidence 87666554
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-24 Score=236.36 Aligned_cols=77 Identities=21% Similarity=0.283 Sum_probs=69.3
Q ss_pred CCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEE--EE
Q 040758 688 WSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRV--LR 759 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~I--lv 759 (788)
....||||||||++|||||+ ++|++|||||||++||+.....+.+.+++ .|+|+|+|||+.++...||++ ++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 45689999999999999996 78999999999999999999999998876 488999999998888899987 88
Q ss_pred EccCC
Q 040758 760 ISTVD 764 (788)
Q Consensus 760 l~~g~ 764 (788)
|++|.
T Consensus 296 ~~~g~ 300 (322)
T 1e69_A 296 MVNGV 300 (322)
T ss_dssp ESSSC
T ss_pred EeCCE
Confidence 88764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-23 Score=229.63 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=72.5
Q ss_pred cCCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQRLAFARLLL------SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl------~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
....+||||||||++|||||+ ++|++|||||||++||+.+...+.+.|++ .|+|+|+|||+++....||++
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345679999999999999999 79999999999999999999999998865 589999999999888889999
Q ss_pred EEEccCCC
Q 040758 758 LRISTVDQ 765 (788)
Q Consensus 758 lvl~~g~~ 765 (788)
++|++|+.
T Consensus 355 ~~l~~G~i 362 (365)
T 3qf7_A 355 LRITGGVV 362 (365)
T ss_dssp EEEETTEE
T ss_pred EEEECCEE
Confidence 99999864
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-26 Score=236.80 Aligned_cols=173 Identities=14% Similarity=0.148 Sum_probs=106.6
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMN 593 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (788)
.-|+|+||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+.... .+..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~----------------------~~~~ 64 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTR----------------------KKRE 64 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECS----------------------CCCS
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCC----------------------CCCc
Confidence 4699999999999999999999999999999999999 5 99998 4332110 0111
Q ss_pred cCcceEEEEccccccCCCCH--HHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 594 RNSRGVFFLPQRPYMVLGSL--RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 594 ~~r~~i~~v~Q~~~lf~~Ti--~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
..++.++|++|++.+|..-+ .+++.++..... .. ....+++.++++...
T Consensus 65 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~------------------------~~-----g~~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 65 KEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANN------------------------FY-----GTLKSEYDKAKEQNK 115 (218)
T ss_dssp SCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE------------------------EE-----EEEHHHHHHHHHTTC
T ss_pred ccccCCeEEECCHHHHHHhhhccchhhhhhcccc------------------------cC-----CCcHHHHHHHHhCCC
Confidence 23456999999987764311 112211100000 00 001234445555432
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEE
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAF-----ARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISV 744 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaI-----ARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~I 744 (788)
.. +. ..+||||||||++| ||+|+.+|++++|||||+++|.+++..+++.+.+ .++| +
T Consensus 116 ~~-il------------~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~ 179 (218)
T 1z6g_A 116 IC-LF------------EMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---E 179 (218)
T ss_dssp EE-EE------------EECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---H
T ss_pred cE-EE------------EecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---h
Confidence 11 00 13599999999999 8999999999999999999999999999988864 3444 4
Q ss_pred ecCcchhhcCCEEEEEc
Q 040758 745 GHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 745 aHr~~~~~~~D~Ilvl~ 761 (788)
+| ...+|+|++++
T Consensus 180 ~h----~~~~d~iiv~~ 192 (218)
T 1z6g_A 180 AN----LLNFNLSIIND 192 (218)
T ss_dssp HT----TSCCSEEEECS
T ss_pred hc----ccCCCEEEECC
Confidence 55 34566666554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.5e-24 Score=210.55 Aligned_cols=76 Identities=5% Similarity=0.173 Sum_probs=63.5
Q ss_pred cCCCCCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEEEEec---Ccchh-hcCC
Q 040758 687 EWSSVLSLGEQQRLAFARL-----LLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYISVGH---RRTLY-DFHK 755 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARA-----Ll~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI~IaH---r~~~~-~~~D 755 (788)
.++.+||||||||++|||| ++.+|++||||| ||++||+...+.+.+.+++.+.|+|+++| +...+ ..||
T Consensus 72 ~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~ 151 (178)
T 1ye8_A 72 SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRR 151 (178)
T ss_dssp TEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHT
T ss_pred ccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHh
Confidence 4456799999999999996 999999999999 99999999999999999888888999997 44444 4566
Q ss_pred E----EEEEcc
Q 040758 756 R----VLRIST 762 (788)
Q Consensus 756 ~----Ilvl~~ 762 (788)
+ |+.+..
T Consensus 152 r~~~~i~~~~~ 162 (178)
T 1ye8_A 152 LPGAVLIELTP 162 (178)
T ss_dssp CTTCEEEECCT
T ss_pred cCCcEEEEecC
Confidence 5 555543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-25 Score=245.89 Aligned_cols=166 Identities=13% Similarity=0.143 Sum_probs=125.5
Q ss_pred ccceeeeeEEEeCCC--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 513 ATLVRDLSLVINEKE--------------------HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge--------------------~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+.+|+|+||+|++|+ ++||+||||||||||+|+|+|+++|++|+|.++|. +.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~---~~----- 107 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV---EV----- 107 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe---ec-----
Confidence 468999999999999 99999999999999999999999999999987421 11
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
. + .++++|++...+.|+.||+.++...
T Consensus 108 ------------------t----~--~~~v~q~~~~~~ltv~D~~g~~~~~----------------------------- 134 (413)
T 1tq4_A 108 ------------------T----M--ERHPYKHPNIPNVVFWDLPGIGSTN----------------------------- 134 (413)
T ss_dssp -----------------------C--CCEEEECSSCTTEEEEECCCGGGSS-----------------------------
T ss_pred ------------------c----e--eEEeccccccCCeeehHhhcccchH-----------------------------
Confidence 0 1 2679998754456888887664210
Q ss_pred cCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChh--HHHHHHHHHHHcc----------CCCEEEEecCCC
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG--EQQRLAFARLLLS----------KPQIVLLDESTS 720 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGG--QrQRiaIARALl~----------~p~iLiLDEpTS 720 (788)
..+.+.++.+++... +. ... |||| ||||++|||||.+ +|++++|||||+
T Consensus 135 --------~~~~~~L~~~~L~~~-------~~---~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPts 195 (413)
T 1tq4_A 135 --------FPPDTYLEKMKFYEY-------DF---FII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADG 195 (413)
T ss_dssp --------CCHHHHHHHTTGGGC-------SE---EEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTT
T ss_pred --------HHHHHHHHHcCCCcc-------CC---eEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccc
Confidence 123455665554321 11 112 9999 9999999999999 999999999999
Q ss_pred CCCHHHHHHHHHHHHh--------c----CCEEEEEecCcc---hhhcCCEEE
Q 040758 721 ALDEANEAHLYEQIEA--------A----GITYISVGHRRT---LYDFHKRVL 758 (788)
Q Consensus 721 aLD~~se~~i~~~L~~--------~----g~TvI~IaHr~~---~~~~~D~Il 758 (788)
+||+.++..+.+.+++ . ..++++.||.++ +.+.||+|.
T Consensus 196 gLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 196 EPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 9999999888766532 1 267888999865 456678774
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-24 Score=231.84 Aligned_cols=142 Identities=14% Similarity=0.163 Sum_probs=108.8
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
|++++| | +++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~------------- 210 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EI------------- 210 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CC-------------
T ss_pred cCchhh-H----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--cc-------------
Confidence 667777 6 358999999999999999999999999999999999999999999985321 00
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCCh
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPST 660 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~ 660 (788)
.....++.+++++
T Consensus 211 ----------~~~~~~~~i~~~~--------------------------------------------------------- 223 (330)
T 2pt7_A 211 ----------VFKHHKNYTQLFF--------------------------------------------------------- 223 (330)
T ss_dssp ----------CCSSCSSEEEEEC---------------------------------------------------------
T ss_pred ----------ccccchhEEEEEe---------------------------------------------------------
Confidence 0000111122110
Q ss_pred HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCE
Q 040758 661 DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGIT 740 (788)
Q Consensus 661 ~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~T 740 (788)
+ |||+||++|||||.++|++|+|||||+. +..+ ..+.+...+.|
T Consensus 224 ----------------------------g----gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~-~l~~~~~g~~t 267 (330)
T 2pt7_A 224 ----------------------------G----GNITSADCLKSCLRMRPDRIILGELRSS---EAYD-FYNVLCSGHKG 267 (330)
T ss_dssp ----------------------------B----TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHH-HHHHHHTTCCC
T ss_pred ----------------------------C----CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHH-HHHHHhcCCCE
Confidence 1 8999999999999999999999999982 2222 23333333458
Q ss_pred EEEEecCcchhhcCCEEEEEccCCC
Q 040758 741 YISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 741 vI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+|+++|+.+..+.|||+++|.+|..
T Consensus 268 vi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 268 TLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEEEcccHHHHHhhhheehhcCCc
Confidence 9999999998889999999998863
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-23 Score=225.03 Aligned_cols=182 Identities=15% Similarity=0.093 Sum_probs=129.7
Q ss_pred CCCcEEEeeeEEEcCCCCccceeeeeEE-----------------------EeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 495 SQKLLDIEDLTLKTPTSKATLVRDLSLV-----------------------INEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 495 ~~~~I~~~nvsf~y~~~~~~vL~~isl~-----------------------i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|+++||++.|. ++++++++. +++|+++||+||||||||||+++|+|+++
T Consensus 40 ~~~~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp TTCCCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345799999999993 577887775 89999999999999999999999999999
Q ss_pred CCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhH
Q 040758 552 DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASD 631 (788)
Q Consensus 552 p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~ 631 (788)
|..|. +.+++|+|+++++..|++||+.+.... ...
T Consensus 116 ~~~G~----------------------------------------~~v~~v~qd~~~~~~t~~e~~~~~~~~-g~~---- 150 (312)
T 3aez_A 116 RWDHH----------------------------------------PRVDLVTTDGFLYPNAELQRRNLMHRK-GFP---- 150 (312)
T ss_dssp TSTTC----------------------------------------CCEEEEEGGGGBCCHHHHHHTTCTTCT-TSG----
T ss_pred ccCCC----------------------------------------CeEEEEecCccCCcccHHHHHHHHHhc-CCC----
Confidence 87552 138999999999988999998653210 000
Q ss_pred HHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q 040758 632 AAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ 711 (788)
Q Consensus 632 aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~ 711 (788)
...+.+.+.+.++.++ .. .. ......|||||+||+++|||++.+|+
T Consensus 151 ------------------------~~~d~~~~~~~L~~l~-~~-------~~--~~~~~~lS~G~~qRv~~a~al~~~p~ 196 (312)
T 3aez_A 151 ------------------------ESYNRRALMRFVTSVK-SG-------SD--YACAPVYSHLHYDIIPGAEQVVRHPD 196 (312)
T ss_dssp ------------------------GGBCHHHHHHHHHHHH-TT-------CS--CEEEEEEETTTTEEEEEEEEEECSCS
T ss_pred ------------------------hHHHHHHHHHHHHHhC-CC-------cc--cCCcccCChhhhhhhhhHHHhccCCC
Confidence 0012345556666654 21 11 11234699999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh--hcCCEEEEEccCC
Q 040758 712 IVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY--DFHKRVLRISTVD 764 (788)
Q Consensus 712 iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~--~~~D~Ilvl~~g~ 764 (788)
|||||||++.+|+.. ..+.+.=-.+|+|+|+.++. ...+|.+.+.++.
T Consensus 197 ilIlDep~~~~d~~~-----~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 197 ILILEGLNVLQTGPT-----LMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEECTTTTCCCSS-----CCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred EEEECCccccCCcch-----HHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 999999999998621 12333222457777776542 3456666565543
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-23 Score=234.44 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=137.1
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++++|+++.|++ +..+|+++ |+|.+||+++|+||||||||||+++|+|+++|+.|.|.++|..+.++.
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~-------- 199 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVK-------- 199 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH--------
T ss_pred CceEEeccceecCC-CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHH--------
Confidence 46899999999964 46799999 999999999999999999999999999999999999999765332331
Q ss_pred hhhcccccccchhcccccCcceEEEEccc-ccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQR-PYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~-~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
..... ......+++.++||+|+ ..+ ...|+.+|+.+... ..+ ..
T Consensus 200 -~~~~~------~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae---------~~~------------------~~ 245 (438)
T 2dpy_A 200 -DFIEN------ILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAE---------DFR------------------DR 245 (438)
T ss_dssp -HHHHT------TTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHH---------HHH------------------TT
T ss_pred -HHHHh------hccccccCceEEEEECCCCCHHHHHHHHHHHHHHHH---------HHH------------------hC
Confidence 00000 00011245679999995 333 34577777754210 000 00
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......++ +....||+|| |||+|| +.+|++ |++||+.+...+.+.+
T Consensus 246 --------------~~~v~~~l----------d~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll 291 (438)
T 2dpy_A 246 --------------GQHVLLIM----------DSLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALV 291 (438)
T ss_dssp --------------TCEEEEEE----------ECHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHH
T ss_pred --------------CCCHHHHH----------HhHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHH
Confidence 00000000 1134599999 999999 899998 9999999999999998
Q ss_pred Hh--c-----CC-----EEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA--A-----GI-----TYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~--~-----g~-----TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ . |. |++++|||++ ...||++++|.+|..
T Consensus 292 ~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~I 333 (438)
T 2dpy_A 292 ERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHI 333 (438)
T ss_dssp TTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEE
T ss_pred HHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEE
Confidence 65 2 43 9999999998 677899988888754
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-23 Score=220.00 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=121.5
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
++++||++++|++++||||||||||||++.|+|+++|++|+|.++|.|..... . .. .+..+
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~------------a-----~~--ql~~~ 150 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA------------A-----SD--QLEIW 150 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH------------H-----HH--HHHHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchh------------H-----HH--HHHHH
Confidence 45789999999999999999999999999999999999999999654321110 0 00 00111
Q ss_pred --cceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 596 --SRGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 596 --r~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
+.+++|++|++. ++. .|++||+.++........ .++.++
T Consensus 151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~-------------------------------------lldt~g 193 (302)
T 3b9q_A 151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVV-------------------------------------LCDTSG 193 (302)
T ss_dssp HHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEE-------------------------------------EECCCC
T ss_pred HHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcch-------------------------------------HHhcCC
Confidence 346999999987 664 489999865310000000 001111
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecC-
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHR- 747 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr- 747 (788)
+.. .......+|| |||++||||++.+|+ +|+|| ||++||+.++. +.+. +.|.|+|++||-
T Consensus 194 l~~---------~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~~~g~t~iiiThlD 257 (302)
T 3b9q_A 194 RLH---------TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNEVVGITGLILTKLD 257 (302)
T ss_dssp CSS---------CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHHHTCCCEEEEECCS
T ss_pred CCc---------chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHHhcCCCEEEEeCCC
Confidence 110 0112233488 999999999999999 99999 99999998663 3444 469999999993
Q ss_pred --------cchh-hcCCEEEEEccCCC
Q 040758 748 --------RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 --------~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.. ...+.|.++..|..
T Consensus 258 ~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 258 GSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp SCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCccChheehHHHHCCCEEEEeCCCC
Confidence 2233 35689999999864
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=8.6e-22 Score=208.83 Aligned_cols=148 Identities=9% Similarity=0.118 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccccc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY 607 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~ 607 (788)
+++||||||||||||+|+|+|+..|++|+|.++|.+ +. ....++.+++++|++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~---i~-----------------------~~~~~~~i~~v~q~~~ 57 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEK---IP-----------------------KTVEIKAIGHVIEEGG 57 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CC-----------------------CCCSCCEEEESCC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcc---cC-----------------------cceeeeeeEEEeecCC
Confidence 489999999999999999999999999999985432 21 1123567999999998
Q ss_pred cCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccc
Q 040758 608 MVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTY 686 (788)
Q Consensus 608 lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~ 686 (788)
++.. |+.||+.|+...... ...+.+.+.++.- .. .
T Consensus 58 ~~~~ltv~d~~~~g~~~~~~-------------------------------~~~~~i~~~~~~~----~~---------~ 93 (270)
T 3sop_A 58 VKMKLTVIDTPGFGDQINNE-------------------------------NCWEPIEKYINEQ----YE---------K 93 (270)
T ss_dssp -CCEEEEECCCC--CCSBCT-------------------------------TCSHHHHHHHHHH----HH---------H
T ss_pred CcCCceEEechhhhhhcccH-------------------------------HHHHHHHHHHHHH----HH---------h
Confidence 8865 999999987532110 0011222222110 00 0
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcch
Q 040758 687 EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~ 750 (788)
....+||||||||+++|||++. +++|||||++||+.. ..+.+.|.+. .++|+|.|+.+.
T Consensus 94 ~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~L~~~-~~vI~Vi~K~D~ 152 (270)
T 3sop_A 94 FLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKHLSKV-VNIIPVIAKADT 152 (270)
T ss_dssp HHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHHHHTT-SEEEEEETTGGG
T ss_pred hhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHHHHhc-CcEEEEEecccc
Confidence 0112499999999999999886 999999999999887 4555666666 899999998654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-22 Score=217.03 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=122.4
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCc
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS 596 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 596 (788)
.++||++++|++++||||||||||||++.|+|+++|++|+|.++|.|..... ...+......+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~-----------------a~eql~~~~~r 210 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAA-----------------ASDQLEIWAER 210 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHH-----------------HHHHHHHHHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccc-----------------hhHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999654321110 00000000113
Q ss_pred ceEEEEccccc-cCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 597 RGVFFLPQRPY-MVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 597 ~~i~~v~Q~~~-lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
.+|+|++|++. ++. .|++||+.++........ .++.+++.+
T Consensus 211 ~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~-------------------------------------lldt~Gl~~ 253 (359)
T 2og2_A 211 TGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVV-------------------------------------LCDTSGRLH 253 (359)
T ss_dssp HTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEE-------------------------------------EEECCCCSS
T ss_pred cCeEEEEecccccChhhhHHHHHHHHHhCCCHHH-------------------------------------HHHhcCCCh
Confidence 46999999987 554 588999875311000000 001111110
Q ss_pred ccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecC----
Q 040758 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHR---- 747 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr---- 747 (788)
.......+|| |||++||||++.+|+ +|+|| ||++||+.++. +.+. +.|.|+|++||-
T Consensus 254 ---------~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~---~~~~~~~g~t~iiiThlD~~~ 317 (359)
T 2og2_A 254 ---------TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNEVVGITGLILTKLDGSA 317 (359)
T ss_dssp ---------CCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHHHTCCCEEEEESCTTCS
T ss_pred ---------hhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---HHHHHhcCCeEEEEecCcccc
Confidence 0112233488 999999999999999 99999 99999998764 3344 369999999993
Q ss_pred -----cchh-hcCCEEEEEccCCC
Q 040758 748 -----RTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 748 -----~~~~-~~~D~Ilvl~~g~~ 765 (788)
++.. ..++.|..+..|..
T Consensus 318 ~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 318 RGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp CTHHHHHHHHHHCCCEEEEECSSS
T ss_pred cccHHHHHHHHhCCCEEEEeCCCC
Confidence 2233 45789999998854
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=196.27 Aligned_cols=72 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEc
Q 040758 691 VLSLGEQQRLAFARLLL---------SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl---------~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.+.+.|+|++||. +. .||++++|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~--~~~~i~~l~ 341 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP--GAALTLRAQ 341 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT--TCSEEEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc--cCCEEEEEE
Confidence 69999999999999999 8999999999999999999999999998766899999994 43 899999999
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 342 ~G~i 345 (359)
T 2o5v_A 342 AGRF 345 (359)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 9865
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.9e-22 Score=205.10 Aligned_cols=182 Identities=13% Similarity=0.086 Sum_probs=100.5
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
..++++| .+|++||+++|+||||||||||+|+|+|+++ .|.++ + ++. ..+ .
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~---~-~~~------------~~~-------~ 58 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFS---V-SAT------------TRA-------P 58 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEEC---C-CEE------------SSC-------C
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEc---c-ccc------------ccC-------C
Confidence 4568888 7999999999999999999999999999986 34442 1 110 000 0
Q ss_pred cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
....++.++|++|++.+|.. |+.+|+........ ++ .. .+ ....+..+.++..
T Consensus 59 ~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~-----------n~-~~---------~g-----~~~~~~~~~~~~~ 112 (207)
T 1znw_A 59 RPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHG-----------GL-HR---------SG-----TLAQPVRAAAATG 112 (207)
T ss_dssp CTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGG-----------GT-EE---------EE-----EEHHHHHHHHHHT
T ss_pred cccccCCCeeEecCHHHHHHHHhcCCceeehhhcC-----------ch-hh---------cC-----CcHHHHHHHHHcC
Confidence 01124569999999987753 66666532100000 00 00 00 0011122222111
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHH---HHccCCCEEEEecCCCCC----CHHHHHHHHHHHHh----cCC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR---LLLSKPQIVLLDESTSAL----DEANEAHLYEQIEA----AGI 739 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR---ALl~~p~iLiLDEpTSaL----D~~se~~i~~~L~~----~g~ 739 (788)
. ..+. ...+.|.+.++-..++ ||+.+|++++|||||+++ |+...+.+.+.+++ .|.
T Consensus 113 ~-~~~~------------~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~ 179 (207)
T 1znw_A 113 V-PVLI------------EVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF 179 (207)
T ss_dssp C-CEEE------------ECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS
T ss_pred C-eEEE------------EeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC
Confidence 0 0000 0012222222222222 899999999999999998 67788888776643 489
Q ss_pred EEEEEecCcchh-hcCCEEEEEc
Q 040758 740 TYISVGHRRTLY-DFHKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~-~~~D~Ilvl~ 761 (788)
|+|+|||+++.+ ..||+|++|.
T Consensus 180 tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 180 DKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp SEEEECSSHHHHHHHHHHHHC--
T ss_pred cEEEECCCHHHHHHHHHHHHHhc
Confidence 999999998654 6899999985
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-21 Score=200.06 Aligned_cols=141 Identities=21% Similarity=0.241 Sum_probs=103.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+++++++|. ++|+|+| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+...+
T Consensus 6 ~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~---------- 67 (261)
T 2eyu_A 6 PEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV---------- 67 (261)
T ss_dssp CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSC----------
T ss_pred CChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceee----------
Confidence 456666642 4899999 9999999999999999999999999999998 99999854321100
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
.+..+++++|+.
T Consensus 68 -----------------~~~~~~~v~q~~--------------------------------------------------- 79 (261)
T 2eyu_A 68 -----------------FKHKKSIVNQRE--------------------------------------------------- 79 (261)
T ss_dssp -----------------CCCSSSEEEEEE---------------------------------------------------
T ss_pred -----------------cCCcceeeeHHH---------------------------------------------------
Confidence 011122333310
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA 737 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~ 737 (788)
+ |++ ...| |++|||||..+|++++||||| |+++...+.+.. +.
T Consensus 80 ------------~----------gl~-----~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~ 122 (261)
T 2eyu_A 80 ------------V----------GED-----TKSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ET 122 (261)
T ss_dssp ------------B----------TTT-----BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HT
T ss_pred ------------h----------CCC-----HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-cc
Confidence 0 000 0113 899999999999999999999 998876655543 46
Q ss_pred CCEEEEEecCcchhhcCCEEEEEcc
Q 040758 738 GITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
|.|+++++|+.+....|||+++|..
T Consensus 123 g~~vl~t~H~~~~~~~~dri~~l~~ 147 (261)
T 2eyu_A 123 GHLVFGTLHTNTAIDTIHRIVDIFP 147 (261)
T ss_dssp TCEEEEEECCSSHHHHHHHHHHTSC
T ss_pred CCEEEEEeCcchHHHHHHHHhhhcC
Confidence 9999999999887778888776643
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.77 E-value=9.1e-19 Score=191.59 Aligned_cols=76 Identities=34% Similarity=0.371 Sum_probs=68.5
Q ss_pred cCCCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQ------RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQ------RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
.....||||||| |+++||||+.+|++|||||||++||+.....+.+.|++ .|.|+|+|||+.++...||++
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~ 323 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 323 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEE
Confidence 345779999999 67888999999999999999999999999999988864 588999999998888899999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|+.
T Consensus 324 ~~l~~ 328 (339)
T 3qkt_A 324 IRISL 328 (339)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99975
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.9e-19 Score=211.59 Aligned_cols=146 Identities=21% Similarity=0.194 Sum_probs=112.4
Q ss_pred CCcEEEeeeEEEcCC---CCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEeeccCcccccCC
Q 040758 496 QKLLDIEDLTLKTPT---SKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFYVKDREETDAHT 571 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~---~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~~~~~~~i~~~~ 571 (788)
.+.|++++. ++|- +++.+++|+||+ |++++|+||||||||||+|+++|+.. ++.|.+.-
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp------------ 610 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP------------ 610 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS------------
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee------------
Confidence 446888887 3443 346789999999 99999999999999999999999874 67776420
Q ss_pred CccchhhhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhh
Q 040758 572 SDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLEN 650 (788)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~ 650 (788)
..+..+++++| +|. -++.||+..
T Consensus 611 ----------------------a~~~~i~~v~~---i~~~~~~~d~l~~------------------------------- 634 (765)
T 1ewq_A 611 ----------------------AEEAHLPLFDG---IYTRIGASDDLAG------------------------------- 634 (765)
T ss_dssp ----------------------SSEEEECCCSE---EEEECCC-------------------------------------
T ss_pred ----------------------hhccceeeHHH---hhccCCHHHHHHh-------------------------------
Confidence 11234777776 332 244444321
Q ss_pred hccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHH--ccCCCEEEEecC---CCCCCHH
Q 040758 651 VGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLL--LSKPQIVLLDES---TSALDEA 725 (788)
Q Consensus 651 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARAL--l~~p~iLiLDEp---TSaLD~~ 725 (788)
.+|+|++|++.+|+++ +.+|+++||||| ||+||..
T Consensus 635 ----------------------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~ 674 (765)
T 1ewq_A 635 ----------------------------------------GKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGV 674 (765)
T ss_dssp ----------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHH
T ss_pred ----------------------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHH
Confidence 2899999999999999 999999999999 9999998
Q ss_pred HH-HHHHHHHHhcCCEEEEEecCcchhhcC
Q 040758 726 NE-AHLYEQIEAAGITYISVGHRRTLYDFH 754 (788)
Q Consensus 726 se-~~i~~~L~~~g~TvI~IaHr~~~~~~~ 754 (788)
+. ..+.+.|.+.|.|+|++||+.++...+
T Consensus 675 ~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 675 AIATAVAEALHERRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHHHHHHHTCEEEEECCCHHHHTCC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 86 478888877899999999998776655
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-20 Score=202.91 Aligned_cols=189 Identities=13% Similarity=0.101 Sum_probs=129.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|.++.++.
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~-------- 113 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVN-------- 113 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHH--------
T ss_pred CCeeecccceecCC-CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHH--------
Confidence 35889999999964 46799999 999999999999999999999999999999999999998655433221
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..-+. . .....++.+.+++|... +..+++.. ...+
T Consensus 114 -~~i~~-~------~~~~~~~~v~~~~~~~~----~~~~r~~~---------~~~~------------------------ 148 (347)
T 2obl_A 114 -EFLAL-L------PQSTLSKCVLVVTTSDR----PALERMKA---------AFTA------------------------ 148 (347)
T ss_dssp -HHHTT-S------CHHHHTTEEEEEECTTS----CHHHHHHH---------HHHH------------------------
T ss_pred -HHHHh-h------hhhhhhceEEEEECCCC----CHHHHHHH---------HHHH------------------------
Confidence 00000 0 00112456788887531 11111100 0000
Q ss_pred CCChHHHHHHHHhcccccccccCCCcccc--ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTT--YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~--~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
..+.+.+.+ .|.+.. .+....||+|| ||+++| +.+|++ |+|||+.....+.+.+
T Consensus 149 ----~~~ae~~~~----------~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ll 204 (347)
T 2obl_A 149 ----TTIAEYFRD----------QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLL 204 (347)
T ss_dssp ----HHHHHHHHT----------TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHH
T ss_pred ----HHHHHHHHh----------ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHH
Confidence 000011110 011110 12345699999 999999 689988 9999999999999988
Q ss_pred Hh-----cCC-----EEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 EA-----AGI-----TYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~-----~g~-----TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++ .|. |++++||+++ ...||++++|.+|+.
T Consensus 205 er~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~I 244 (347)
T 2obl_A 205 ERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHI 244 (347)
T ss_dssp TTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEE
T ss_pred HHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEE
Confidence 64 256 8999999998 677999999998864
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.5e-20 Score=188.87 Aligned_cols=141 Identities=17% Similarity=0.184 Sum_probs=97.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+ ...+++.+||++|+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~-------------------------~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEE-------------------------VRQGGRRIGFDVVT 53 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCE-------------------------EETTSSEEEEEEEE
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecch-------------------------hHhhhceEEEEEEe
Confidence 78999999999999999999999999 999 8886433211 12356789999998
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~ 685 (788)
. .++ ++|+..-... . .. . ..-...
T Consensus 54 ~---~g~-~~~l~~~~~~---------------------------------~---------------~~-~---~~~~~v 77 (189)
T 2i3b_A 54 L---SGT-RGPLSRVGLE---------------------------------P---------------PP-G---KRECRV 77 (189)
T ss_dssp T---TSC-EEEEEECCCC---------------------------------C---------------CS-S---SCCEES
T ss_pred c---ccc-eehhhccccc---------------------------------C---------------Cc-c---cccccc
Confidence 6 222 1222100000 0 00 0 000123
Q ss_pred ccCCCCCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHhcCCEEE---EEecCcc
Q 040758 686 YEWSSVLSLGEQQRL-AFAR---LLLSKPQIVLLDE--STSALDEANEAHLYEQIEAAGITYI---SVGHRRT 749 (788)
Q Consensus 686 ~e~g~~LSGGQrQRi-aIAR---ALl~~p~iLiLDE--pTSaLD~~se~~i~~~L~~~g~TvI---~IaHr~~ 749 (788)
++++..+|+|||+++ ++++ |++++|++||||| ||..+|....+.+.+.++....+++ .++||.+
T Consensus 78 ~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~ 150 (189)
T 2i3b_A 78 GQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP 150 (189)
T ss_dssp SSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC
T ss_pred ceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCc
Confidence 455677999999999 5566 6899999999999 8999999998888888876433342 3449864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-19 Score=205.71 Aligned_cols=166 Identities=14% Similarity=0.152 Sum_probs=115.5
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEEeeccCcccccCCCccchh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK-ITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~-I~~~~~~~~~i~~~~~~~~~~ 577 (788)
++++++++.|++ -..+| +..+++|++++|+||||||||||++.++|...|. |+ +
T Consensus 258 ~~~~~l~~g~~~-ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v-------------------- 312 (525)
T 1tf7_A 258 SSNVRVSSGVVR-LDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERA-------------------- 312 (525)
T ss_dssp CCCCEECCSCHH-HHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--------------------
T ss_pred cccceeecChHH-HHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--------------------
Confidence 566777766631 01233 4499999999999999999999999999998774 43 2
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhc-CCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI-YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~-~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+++|++. .++.++.. ++
T Consensus 313 ---------------------i~~~~ee~~---~~l~~~~~~~g------------------------------------ 332 (525)
T 1tf7_A 313 ---------------------ILFAYEESR---AQLLRNAYSWG------------------------------------ 332 (525)
T ss_dssp ---------------------EEEESSSCH---HHHHHHHHTTS------------------------------------
T ss_pred ---------------------EEEEEeCCH---HHHHHHHHHcC------------------------------------
Confidence 344555541 12222221 11
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH-----HHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEA-----NEAHLY 731 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~-----se~~i~ 731 (788)
.+.++ +...++..+ ....+..|||||+||+++||++..+|++||+| ||++||.. ..+.+.
T Consensus 333 -~~~~~----~~~~g~~~~---------~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~ 397 (525)
T 1tf7_A 333 -MDFEE----MERQNLLKI---------VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVI 397 (525)
T ss_dssp -CCHHH----HHHTTSEEE---------CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHH
T ss_pred -CCHHH----HHhCCCEEE---------EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHH
Confidence 00011 111111111 12234569999999999999999999999999 99999998 777776
Q ss_pred HHH---HhcCCEEEEEecCc----------chh-hcCCEEEEEccCC
Q 040758 732 EQI---EAAGITYISVGHRR----------TLY-DFHKRVLRISTVD 764 (788)
Q Consensus 732 ~~L---~~~g~TvI~IaHr~----------~~~-~~~D~Ilvl~~g~ 764 (788)
+.+ ++.|.|+|+|+|+. ..+ ..||+|++|++|+
T Consensus 398 ~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 398 GVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 655 44799999999997 444 5799999999885
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=4.5e-19 Score=189.84 Aligned_cols=179 Identities=17% Similarity=0.241 Sum_probs=108.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
.++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+ ..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~----------------------- 75 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ES----------------------- 75 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SC-----------------------
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CC-----------------------
Confidence 3579999999999999999999999999999999999999988 78663211 10
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHH-HHHHHHhc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDD-LIKALEDV 670 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 670 (788)
....++.+..+.|+..+ +..+++..+... .....+ +.+.++..
T Consensus 76 ~~~~~~r~~~~~~~~~~---~~~~~l~~~~~~---------------------------------~~~~~~~~~~~l~~~ 119 (296)
T 1cr0_A 76 VEETAEDLIGLHNRVRL---RQSDSLKREIIE---------------------------------NGKFDQWFDELFGND 119 (296)
T ss_dssp HHHHHHHHHHHHTTCCG---GGCHHHHHHHHH---------------------------------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHcCCCh---hhccccccCCCC---------------------------------HHHHHHHHHHHhccC
Confidence 00111122222222211 111122110000 000011 11222211
Q ss_pred ccccccccCCCccccccCCCCCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-HHHHHHHHHHH----hcC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGE-QQRLAFARLLLSKPQIVLLDESTS---A---LDE-ANEAHLYEQIE----AAG 738 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQ-rQRiaIARALl~~p~iLiLDEpTS---a---LD~-~se~~i~~~L~----~~g 738 (788)
++. ..+....+|.+| +||+. |+++..+|++|||||||+ + +|. .....+.+.|+ +.|
T Consensus 120 ~l~-----------i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~ 187 (296)
T 1cr0_A 120 TFH-----------LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTG 187 (296)
T ss_dssp CEE-----------EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHC
T ss_pred CEE-----------EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 111 111224589998 77777 999999999999999999 4 444 44456666664 259
Q ss_pred CEEEEEecCc-----------------------chhhcCCEEEEEccCCC
Q 040758 739 ITYISVGHRR-----------------------TLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 739 ~TvI~IaHr~-----------------------~~~~~~D~Ilvl~~g~~ 765 (788)
+|+|+++|.. .+...||+|++|++|+.
T Consensus 188 ~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 188 VVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp CEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 9999999984 33467999999998864
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.9e-19 Score=179.63 Aligned_cols=145 Identities=14% Similarity=0.090 Sum_probs=96.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-------CCceEEEeeccCcccccCCCccchhhhcccccccchhccccc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-------GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNR 594 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-------~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (788)
-|++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+ . .
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~---~--------------------------~ 71 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---T--------------------------F 71 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS---C--------------------------C
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC---C--------------------------C
Confidence 6999999999999999999999999996655 33466663211 0 0
Q ss_pred CcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccccc
Q 040758 595 NSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674 (788)
Q Consensus 595 ~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 674 (788)
..+.+++++|+..++..|+.+|+.+...
T Consensus 72 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 99 (231)
T 4a74_A 72 RPERIREIAQNRGLDPDEVLKHIYVARA---------------------------------------------------- 99 (231)
T ss_dssp CHHHHHHHHHHTTSCHHHHHHTEEEEEC----------------------------------------------------
T ss_pred CHHHHHHHHHHcCCCHHHHhhcEEEEec----------------------------------------------------
Confidence 0123666777777666677777765311
Q ss_pred ccccCCCccccccCCCCCChh-HHHHHHHHHHHcc-------CCCEEEEecCCCCCCHH-------HH-----HHHHHHH
Q 040758 675 ILPRLNSLDTTYEWSSVLSLG-EQQRLAFARLLLS-------KPQIVLLDESTSALDEA-------NE-----AHLYEQI 734 (788)
Q Consensus 675 ~~~~~~g~~t~~e~g~~LSGG-QrQRiaIARALl~-------~p~iLiLDEpTSaLD~~-------se-----~~i~~~L 734 (788)
.+++ +++.+..+++++. +|++++|||||+.+|++ .+ ..+.+.|
T Consensus 100 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l 162 (231)
T 4a74_A 100 -----------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL 162 (231)
T ss_dssp -----------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred -----------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence 1222 2233444444444 99999999999999984 22 1344443
Q ss_pred H----hcCCEEEEEecC----cc-hhhcCCEEEEEccCC
Q 040758 735 E----AAGITYISVGHR----RT-LYDFHKRVLRISTVD 764 (788)
Q Consensus 735 ~----~~g~TvI~IaHr----~~-~~~~~D~Ilvl~~g~ 764 (788)
. +.|.|+|+++|. .. +...||++++|++|+
T Consensus 163 ~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 163 HRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp HHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred HHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 2 359999999994 33 345799999999864
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-18 Score=214.44 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=111.5
Q ss_pred CcEEEee-----eEEEcCCCCccceeeeeEEEeC-------CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccC
Q 040758 497 KLLDIED-----LTLKTPTSKATLVRDLSLVINE-------KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDR 564 (788)
Q Consensus 497 ~~I~~~n-----vsf~y~~~~~~vL~~isl~i~~-------Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~ 564 (788)
+.|+++| |++.|++ ++.+++|++|++++ |++++|+||||||||||+|++ |+..+-
T Consensus 749 ~~l~i~~~rHP~l~~~~~~-~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------- 815 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG-DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------- 815 (1022)
T ss_dssp CCEEEEEECCCC------C-CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC-CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH-----------
Confidence 4699999 9999953 46799999999987 999999999999999999999 986530
Q ss_pred cccccCCCccchhhhcccccccchhcccccCcceEE-EEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchh
Q 040758 565 EETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF-FLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLT 643 (788)
Q Consensus 565 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~-~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~ 643 (788)
.++| ||||++. ..|+.|||... .
T Consensus 816 --------------------------------aqiG~~Vpq~~~--~l~v~d~I~~r-i--------------------- 839 (1022)
T 2o8b_B 816 --------------------------------AQMGCYVPAEVC--RLTPIDRVFTR-L--------------------- 839 (1022)
T ss_dssp --------------------------------HTTTCCEESSEE--EECCCSBEEEE-C---------------------
T ss_pred --------------------------------hheeEEeccCcC--CCCHHHHHHHH-c---------------------
Confidence 1245 8999873 34555555210 0
Q ss_pred hhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040758 644 SAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALD 723 (788)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD 723 (788)
++. +......+++|+++++ +++|++++.+|+++||||||+|+|
T Consensus 840 ---------------------------g~~---------d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd 882 (1022)
T 2o8b_B 840 ---------------------------GAS---------DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTA 882 (1022)
T ss_dssp ---------------------------C------------------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSC
T ss_pred ---------------------------CCH---------HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCC
Confidence 000 0000112457887775 999999999999999999999999
Q ss_pred HHHH-HHHH---HHHHhc-CCEEEEEecCcchhh-cCCEEEEEc
Q 040758 724 EANE-AHLY---EQIEAA-GITYISVGHRRTLYD-FHKRVLRIS 761 (788)
Q Consensus 724 ~~se-~~i~---~~L~~~-g~TvI~IaHr~~~~~-~~D~Ilvl~ 761 (788)
+... ..+. +.|.+. |.|+|++||+.++.. .+|++.+++
T Consensus 883 ~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~ 926 (1022)
T 2o8b_B 883 TFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL 926 (1022)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec
Confidence 8874 3333 444444 999999999988764 688887763
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=160.82 Aligned_cols=76 Identities=33% Similarity=0.347 Sum_probs=68.7
Q ss_pred cCCCCCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEE
Q 040758 687 EWSSVLSLGEQQRLAFA------RLLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRV 757 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIA------RALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~I 757 (788)
..+.+||||||||++|| |||+.+|+++||||||++||+.+...+.+.+.+ .|+|+|+|||+.+....||++
T Consensus 53 ~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 53 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred CChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 34678999999999876 999999999999999999999999999998864 489999999999878899999
Q ss_pred EEEcc
Q 040758 758 LRIST 762 (788)
Q Consensus 758 lvl~~ 762 (788)
++|++
T Consensus 133 i~l~~ 137 (148)
T 1f2t_B 133 IRISL 137 (148)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99964
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=9.3e-19 Score=202.52 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=114.9
Q ss_pred EeeeEEEcCCCCccceeeeeE-EEeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 501 IEDLTLKTPTSKATLVRDLSL-VINEKEHLLVMGPSGSGKTSLLRA--MAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl-~i~~Ge~iaIvG~sGsGKSTLl~l--L~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.+++. +|++ +.++|+|+|| .|++|++++|+||||||||||+++ +.|+++|++|.|+++|.+ ..
T Consensus 15 ~~~~~-~~~~-g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~---~~--------- 80 (525)
T 1tf7_A 15 HQAIA-KMRT-MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE---TP--------- 80 (525)
T ss_dssp CSSCC-EECC-CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS---CH---------
T ss_pred ccccc-cccC-CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC---CH---------
Confidence 34443 3443 5679999999 999999999999999999999999 789999999999996543 10
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
......++.+|+++|++... +|+.+-..... .. ..
T Consensus 81 ------------~~~~~~~~~~g~~~q~~~~~-----~~l~~~~~~~~-~~---------~~------------------ 115 (525)
T 1tf7_A 81 ------------QDIIKNARSFGWDLAKLVDE-----GKLFILDASPD-PE---------GQ------------------ 115 (525)
T ss_dssp ------------HHHHHHHGGGTCCHHHHHHT-----TSEEEEECCCC-SS---------CC------------------
T ss_pred ------------HHHHHHHHHcCCChHHhhcc-----CcEEEEecCcc-cc---------hh------------------
Confidence 01112235689999987521 12221000000 00 00
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-----CCHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA-----LDEANEAHLYE 732 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSa-----LD~~se~~i~~ 732 (788)
++++.++++... ......||||| |++++|||||+. ||+...+.+.+
T Consensus 116 -------~~l~~~~l~~~~---------~~~~~~LS~g~-------------~~~lilDe~t~~~~~~~lD~~~~~~l~~ 166 (525)
T 1tf7_A 116 -------EVVGGFDLSALI---------ERINYAIQKYR-------------ARRVSIDSVTSVFQQYDASSVVRRELFR 166 (525)
T ss_dssp -------SCCSSHHHHHHH---------HHHHHHHHHHT-------------CSEEEEECSTTTSTTTCCHHHHHHHHHH
T ss_pred -------hhhcccCHHHHH---------HHHHHHHHHcC-------------CCEEEECCHHHHHHhcCCHHHHHHHHHH
Confidence 000001110000 00112266664 789999999984 58888888887
Q ss_pred HHH---hcCCEEEEEecCcchh---------hc-CCEEEEEccCCC
Q 040758 733 QIE---AAGITYISVGHRRTLY---------DF-HKRVLRISTVDQ 765 (788)
Q Consensus 733 ~L~---~~g~TvI~IaHr~~~~---------~~-~D~Ilvl~~g~~ 765 (788)
.++ +.|+|+|+|+|+++.+ .+ ||+|++|++|..
T Consensus 167 ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~~~ 212 (525)
T 1tf7_A 167 LVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNVLE 212 (525)
T ss_dssp HHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEECS
T ss_pred HHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEEcc
Confidence 765 3699999999998753 44 999999998643
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-18 Score=182.16 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=95.4
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRS 591 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 591 (788)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------------------------------- 55 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------------------------------- 55 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC-------------------------------
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc-------------------------------
Confidence 567999999999999999999999999999999999976 555431
Q ss_pred cccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcc
Q 040758 592 MNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVK 671 (788)
Q Consensus 592 ~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 671 (788)
..++.+++++|+.+....|+.+|+.+........ .....+.+.+.+.|+.+.
T Consensus 56 --~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~L~~l~ 107 (245)
T 2jeo_A 56 --QRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFD--------------------------HPDAFDNDLMHRTLKNIV 107 (245)
T ss_dssp --GGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTT--------------------------SGGGBCHHHHHHHHHHHH
T ss_pred --ccCCceEEEeCCcCccccCHhHhhhhhccCCCCC--------------------------CcccccHHHHHHHHHHHH
Confidence 1235699999997444458888875421100000 000012233444444321
Q ss_pred cccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecC
Q 040758 672 LGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHR 747 (788)
Q Consensus 672 l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr 747 (788)
. +. ......||+||+||+++ ++++.+|+++|||||....|.. +.+ .+.|++++||.
T Consensus 108 --~------~~---~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~~~~~i~v~th~ 164 (245)
T 2jeo_A 108 --E------GK---TVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE--------IRDMFHLRLFVDTDS 164 (245)
T ss_dssp --T------TC---CEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--------HHTTCSEEEEEECCH
T ss_pred --C------CC---CeecccccccccCccCc-eEEecCCCEEEEeCccccccHH--------HHHhcCeEEEEECCH
Confidence 0 11 11234699999999988 6889999999999998888754 222 48999999997
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=200.30 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=62.7
Q ss_pred CChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHH----HHHHHh-cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 692 LSLGEQQRLAFARLL--LSKPQIVLLDESTSALDEANEAHL----YEQIEA-AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 692 LSGGQrQRiaIARAL--l~~p~iLiLDEpTSaLD~~se~~i----~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+|+|++++..+|+++ +.+|+++||||||+|+|+.....+ .+.+.+ .|.|+|++||+.++...||++..+.+|.
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~ 801 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLH 801 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeE
Confidence 888888888888888 999999999999999999887666 333444 5999999999999999999998888876
Q ss_pred C
Q 040758 765 Q 765 (788)
Q Consensus 765 ~ 765 (788)
.
T Consensus 802 v 802 (934)
T 3thx_A 802 V 802 (934)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=9.8e-20 Score=184.80 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=104.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
.++|+++||+||||||||||+++|+|++.| .++++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------------------------------~i~~v 37 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------------------------------RVALL 37 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------------------------------GEEEE
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------------------------------CeEEE
Confidence 578999999999999999999999998754 16789
Q ss_pred ccccccCCC---CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccC
Q 040758 603 PQRPYMVLG---SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRL 679 (788)
Q Consensus 603 ~Q~~~lf~~---Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 679 (788)
+|+++++.. |+.+|+.+..... ...+.+.+.+.++.+++......
T Consensus 38 ~~d~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~l~~~~~~~~~~~- 85 (211)
T 3asz_A 38 PMDHYYKDLGHLPLEERLRVNYDHP-------------------------------DAFDLALYLEHAQALLRGLPVEM- 85 (211)
T ss_dssp EGGGCBCCCTTSCHHHHHHSCTTSG-------------------------------GGBCHHHHHHHHHHHHTTCCEEE-
T ss_pred ecCccccCcccccHHHhcCCCCCCh-------------------------------hhhhHHHHHHHHHHHHcCCCcCC-
Confidence 999988743 6666654321000 00123456666666655433222
Q ss_pred CCccccccCCCCCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHHHHHHHHHh----cCCEEEEE
Q 040758 680 NSLDTTYEWSSVLSLGE----QQRLAFARLLLSKPQIVLLDESTSA-------LDEANEAHLYEQIEA----AGITYISV 744 (788)
Q Consensus 680 ~g~~t~~e~g~~LSGGQ----rQRiaIARALl~~p~iLiLDEpTSa-------LD~~se~~i~~~L~~----~g~TvI~I 744 (788)
.+..+|+|| +||+++||+++.+|+++++||||++ ||+..+..+.+.+.+ .|+|++.+
T Consensus 86 --------~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~ 157 (211)
T 3asz_A 86 --------PVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGV 157 (211)
T ss_dssp --------CCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred --------CcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHH
Confidence 244588885 5799999999999999999999999 999999988887754 49999999
Q ss_pred ecCc
Q 040758 745 GHRR 748 (788)
Q Consensus 745 aHr~ 748 (788)
+|+.
T Consensus 158 ~~~~ 161 (211)
T 3asz_A 158 VAQY 161 (211)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9983
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-20 Score=203.27 Aligned_cols=194 Identities=14% Similarity=0.092 Sum_probs=127.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
++|++++ +++|+.++|+||||||||||+++|+|+++|+ +|+|.+.+.+ +. .
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~---~e-----------------------~ 177 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP---IE-----------------------Y 177 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESS---CC-----------------------S
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEeccc---Hh-----------------------h
Confidence 3577766 8999999999999999999999999999998 8999774321 10 0
Q ss_pred ccCcceEEEEcc-----ccccCCCCHHHHhcCCCCcc-------ccchhhHHHHhcCCc-cchhhhhhhhhhccCCCCCC
Q 040758 593 NRNSRGVFFLPQ-----RPYMVLGSLRQQLIYPTWTE-------EVKPASDAAKSAGLV-PFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 593 ~~~r~~i~~v~Q-----~~~lf~~Ti~eNi~~~~~~~-------~~~~~~~aa~~~~~~-~~i~~~~~~~~~~~~~~~~~ 659 (788)
..+..+++|+| ++..|.+++++|+++. ++. +.+.+..+.+.++.. ..+... ...+
T Consensus 178 -~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~-pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~----------H~~~ 245 (372)
T 2ewv_A 178 -VFKHKKSIVNQREVGEDTKSFADALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTL----------HTNT 245 (372)
T ss_dssp -CCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSC-CSEEEESCCCSHHHHHHHHHHHTTTCEEEECC----------CCCS
T ss_pred -hhccCceEEEeeecCCCHHHHHHHHHHHhhhC-cCEEEECCCCCHHHHHHHHHHHhcCCEEEEEE----------Ccch
Confidence 23456899999 8889999999999973 322 222333333333221 111110 0111
Q ss_pred hHHHHHHHHhccccc----ccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHH----H-
Q 040758 660 TDDLIKALEDVKLGY----ILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQI--VLLDESTSALDEA----N- 726 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~----~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~i--LiLDEpTSaLD~~----s- 726 (788)
..++.+.+-.+.... ... ..++++.. .+++..+||| ||++|||+++.+|++ +|+||+|++||.. +
T Consensus 246 ~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~ 323 (372)
T 2ewv_A 246 AIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQA 323 (372)
T ss_dssp HHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC----
T ss_pred HHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHH
Confidence 122222111111100 000 01356654 5666668999 999999999999999 9999999999965 2
Q ss_pred ----HHHHHHHHHh--cCCEEEEEecCcc
Q 040758 727 ----EAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 727 ----e~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
+..++++++. .|+|.+.++||.+
T Consensus 324 ~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 352 (372)
T 2ewv_A 324 ETGMQTMNQTLYKLYKQGLITLEDAMEAS 352 (372)
T ss_dssp ---CBCSHHHHHHTTTTSSSCTTTTTSSC
T ss_pred hcCCccHHHHHHHHHHCCCCCHHHHHHHc
Confidence 2345666664 6999999999976
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-17 Score=182.15 Aligned_cols=147 Identities=22% Similarity=0.257 Sum_probs=103.7
Q ss_pred eeeEEEcCCCCccceeeeeE-------EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-CceEEEeeccCcccccCCCc
Q 040758 502 EDLTLKTPTSKATLVRDLSL-------VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDG-RGKITFYVKDREETDAHTSD 573 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl-------~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~-~G~I~~~~~~~~~i~~~~~~ 573 (788)
.+++++|.....+.|+++.+ .+.+|+.++|+||||||||||+++|+|+++|+ +|.|... .|-.+.
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~-ed~~e~------ 164 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTI-EDPIEF------ 164 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEE-ESSCCS------
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEc-cCcHHh------
Confidence 45666664444556777776 78899999999999999999999999999997 5666542 111110
Q ss_pred cchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 574 VDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
..+...++++|.....
T Consensus 165 --------------------~~~~~~~~v~q~~~~~-------------------------------------------- 180 (356)
T 3jvv_A 165 --------------------VHESKKCLVNQREVHR-------------------------------------------- 180 (356)
T ss_dssp --------------------CCCCSSSEEEEEEBTT--------------------------------------------
T ss_pred --------------------hhhccccceeeeeecc--------------------------------------------
Confidence 0112234455543100
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
..++-.+ +|||||.++|++|++|||| |.++...+.+.
T Consensus 181 ------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~ 217 (356)
T 3jvv_A 181 ------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTA 217 (356)
T ss_dssp ------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH
T ss_pred ------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH
Confidence 0022222 8999999999999999999 77776655554
Q ss_pred HHhcCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 734 IEAAGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 734 L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
.+.|+|+|+++|+.+....+||+++|..|
T Consensus 218 -~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 218 -AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp -HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred -HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 34599999999999988889999988554
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-18 Score=203.28 Aligned_cols=183 Identities=13% Similarity=0.121 Sum_probs=106.7
Q ss_pred cEEEeeeEEEcCCCCccceeee----------eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEEeeccCcc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDL----------SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITFYVKDREE 566 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~i----------sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~~~~~~~~ 566 (788)
.++++|+++.|+...+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|.++|.+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~--- 83 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLV--- 83 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEE---
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEE---
Confidence 4889999999964334555555 366665 999999999999999999999988 89999985433
Q ss_pred cccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhh
Q 040758 567 TDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSA 645 (788)
Q Consensus 567 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~ 645 (788)
+.. ........+++.++|++|++.+++. |+++||.+....
T Consensus 84 i~~-----------------~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~---------------------- 124 (608)
T 3szr_A 84 LKL-----------------KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA---------------------- 124 (608)
T ss_dssp EEE-----------------EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH----------------------
T ss_pred EEE-----------------ecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH----------------------
Confidence 210 0001123467789999999988764 888888542100
Q ss_pred hhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecC------C
Q 040758 646 QKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDES------T 719 (788)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEp------T 719 (788)
.+.. +..+| ++++.++.+...+|+++++||| |
T Consensus 125 -----~~~~----------------------------------~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t 162 (608)
T 3szr_A 125 -----IAGE----------------------------------GMGIS---HELITLEISSRDVPDLTLIDLPGITRVAV 162 (608)
T ss_dssp -----HHCS----------------------------------SSCCC---SCCEEEEEEESSSCCEEEEECCC------
T ss_pred -----hcCC----------------------------------ccccc---hHHHHHHhcCCCCCceeEeeCCCcccccc
Confidence 0000 00011 1222233333458999999999 9
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCEEEEEecCcchh--------h-----cCCEEEEEccCCCCC
Q 040758 720 SALDEANEAHLYEQIEA-----AGITYISVGHRRTLY--------D-----FHKRVLRISTVDQNS 767 (788)
Q Consensus 720 SaLD~~se~~i~~~L~~-----~g~TvI~IaHr~~~~--------~-----~~D~Ilvl~~g~~~~ 767 (788)
++||+..+..+.+.+++ .+.++++++|+.+.. + ....|+|+.+++...
T Consensus 163 ~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 163 GNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 99999999988887754 378899999997632 1 135689999987543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=194.08 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHH-H---HHHh-cCCEEEEEecCcchhhcCCE
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLY-E---QIEA-AGITYISVGHRRTLYDFHKR 756 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~-~---~L~~-~g~TvI~IaHr~~~~~~~D~ 756 (788)
+++|+|++|+..|+++ +.+|+++||||||+|||+.....+. . .+.+ .|.|+|++||+.++..+||+
T Consensus 734 stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 734 STFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 5699999999999999 8999999999999999998877665 3 3333 59999999999888766553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-17 Score=176.67 Aligned_cols=171 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|..... ...+...-..+.++++|+|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~-----------------a~~ql~~~~~~~~i~~v~q 163 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAA-----------------GGTQLSEWGKRLSIPVIQG 163 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTT-----------------TTHHHHHHHHHHTCCEECC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChh-----------------HHHHHHHHHHhcCceEEEe
Confidence 69999999999999999999999999999999999654422110 0000000001346999999
Q ss_pred ccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcc
Q 040758 605 RPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLD 683 (788)
Q Consensus 605 ~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~ 683 (788)
++.++.. |+.+|+.++.. .+.... +++..+..+
T Consensus 164 ~~~~~p~~~v~~~v~~~~~-------------~~~d~~---------------------------------llDt~G~~~ 197 (304)
T 1rj9_A 164 PEGTDSAALAYDAVQAMKA-------------RGYDLL---------------------------------FVDTAGRLH 197 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHH-------------HTCSEE---------------------------------EECCCCCCT
T ss_pred CCCCCHHHHHHHHHHHHHh-------------CCCCEE---------------------------------EecCCCCCC
Confidence 9877653 77888754210 000000 000000000
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecCcchhhc-------
Q 040758 684 TTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHRRTLYDF------- 753 (788)
Q Consensus 684 t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr~~~~~~------- 753 (788)
.. ...++..++||++||||+..+|+ +|.|| |+++.|... .+ ..+. ..|.|+|++||..+..+.
T Consensus 198 ~~---~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~~~~--~~-~~~~~~~~~t~iivTh~d~~a~gg~~l~i~ 270 (304)
T 1rj9_A 198 TK---HNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQNGLE--QA-KKFHEAVGLTGVIVTKLDGTAKGGVLIPIV 270 (304)
T ss_dssp TC---HHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTHHHH--HH-HHHHHHHCCSEEEEECTTSSCCCTTHHHHH
T ss_pred ch---HHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHHHHH--HH-HHHHHHcCCcEEEEECCcccccccHHHHHH
Confidence 00 01145556999999999999999 66677 555544322 22 2233 359999999997543222
Q ss_pred ---CCEEEEEccCCC
Q 040758 754 ---HKRVLRISTVDQ 765 (788)
Q Consensus 754 ---~D~Ilvl~~g~~ 765 (788)
.-.|..+..|..
T Consensus 271 ~~~~~pi~~ig~Ge~ 285 (304)
T 1rj9_A 271 RTLKVPIKFVGVGEG 285 (304)
T ss_dssp HHHCCCEEEEECSSS
T ss_pred HHHCCCeEEEeCCCC
Confidence 246777777643
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-17 Score=184.41 Aligned_cols=154 Identities=16% Similarity=0.093 Sum_probs=109.9
Q ss_pred EEeeeEEE---cCCCCccce---------eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCccc
Q 040758 500 DIEDLTLK---TPTSKATLV---------RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREET 567 (788)
Q Consensus 500 ~~~nvsf~---y~~~~~~vL---------~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i 567 (788)
+|+||+|+ |++.++++| +++||+|++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 89999999 863234555 9999999999999999999999999999999999999999999632 111
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEc-cccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLP-QRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQ 646 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~-Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~ 646 (788)
.....++.+++++ |++.+
T Consensus 215 -----------------------~~~~~~~~v~~v~~q~~~~-------------------------------------- 233 (361)
T 2gza_A 215 -----------------------FLPDHPNHVHLFYPSEAKE-------------------------------------- 233 (361)
T ss_dssp -----------------------CCTTCSSEEEEECC-------------------------------------------
T ss_pred -----------------------CccccCCEEEEeecCcccc--------------------------------------
Confidence 1112456799998 76532
Q ss_pred hhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040758 647 KLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s 726 (788)
.++++..+|-.|++++-.+|+.+++||++.+ +.
T Consensus 234 --------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~ 266 (361)
T 2gza_A 234 --------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRGG---EA 266 (361)
T ss_dssp -------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HH
T ss_pred --------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchHH---HH
Confidence 0123334566677788889999999999862 22
Q ss_pred HHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 727 EAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 727 e~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
. .+.+.+.....|++...|..+....+||+..+..+.
T Consensus 267 ~-~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 267 Y-DFINVAASGHGGSITSCHAGSCELTFERLALMVLQN 303 (361)
T ss_dssp H-HHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTTS
T ss_pred H-HHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhcc
Confidence 2 233444444567899999988777788887776653
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-19 Score=199.65 Aligned_cols=85 Identities=13% Similarity=0.169 Sum_probs=66.0
Q ss_pred ceeeeeEEEeC--CCEEEEEcCCCCcHHHHHHHHhcCCCCCC----ceEEEeec-cCcccccCCCccchhhhcccccccc
Q 040758 515 LVRDLSLVINE--KEHLLVMGPSGSGKTSLLRAMAGLWSDGR----GKITFYVK-DREETDAHTSDVDSLEVNSQNMNGE 587 (788)
Q Consensus 515 vL~~isl~i~~--Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~----G~I~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~ 587 (788)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|.+++. ++.++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~------------------- 217 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQA------------------- 217 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTS-------------------
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCccc-------------------
Confidence 35789999999 99999999999999999999999999999 88876321 111110
Q ss_pred hhcccccCcceEEEEccccccCCCCHHHHhcCCC
Q 040758 588 LTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPT 621 (788)
Q Consensus 588 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~ 621 (788)
.....+ +.|++++|++.+|..|++|||.++.
T Consensus 218 --~~~~~~-~~I~~~~q~~~~~~~t~~~nl~~~~ 248 (365)
T 1lw7_A 218 --MQYSDY-PQMALGHQRYIDYAVRHSHKIAFID 248 (365)
T ss_dssp --SCTTTH-HHHHHHHHHHHHHHHHHCSSEEEES
T ss_pred --CChhHH-HHHHHHHHHHHHHHHhccCCEEEEe
Confidence 011112 3488999999999999999998754
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-17 Score=178.70 Aligned_cols=163 Identities=11% Similarity=0.087 Sum_probs=80.3
Q ss_pred eeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC-CCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 502 EDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL-WSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 502 ~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl-~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
+||++.|+ ++.++++++|+| +|+||||||||||++.|.|. ..|++| |.++|. ++.
T Consensus 2 ~~l~~~~~--~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~---~~~------------ 57 (301)
T 2qnr_A 2 SNLPNQVH--RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAE---KIE------------ 57 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------------
T ss_pred CCCcceEC--CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCc---ccC------------
Confidence 47788885 467999999998 99999999999999999998 889999 776432 221
Q ss_pred ccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPS 659 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~ 659 (788)
... . .+.+++++|+..++ .-|+.|+..++......+ .
T Consensus 58 ---------~t~-~-~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e-------------------------------~ 95 (301)
T 2qnr_A 58 ---------RTV-Q-IEASTVEIEERGVKLRLTVVDTPGYGDAINCRD-------------------------------C 95 (301)
T ss_dssp ------------------CEEEEC---CCEEEEEEEEC------------------------------------------
T ss_pred ---------Ccc-e-EeeEEEEecCCCcccCcchhhhhhhhhhcCcHH-------------------------------H
Confidence 000 1 23478999987654 347777776643210000 0
Q ss_pred hHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-CCHHHHHHHHHHHHh-c
Q 040758 660 TDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSA-LDEANEAHLYEQIEA-A 737 (788)
Q Consensus 660 ~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSa-LD~~se~~i~~~L~~-~ 737 (788)
...+.+.+... ......++|||||||+++|||++ +|++||||++ ||+... .+.+.+.+ .
T Consensus 96 ~~~l~~~l~~~--------------~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~-~~l~~l~~~~ 156 (301)
T 2qnr_A 96 FKTIISYIDEQ--------------FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV-AFMKAIHNKV 156 (301)
T ss_dssp CTTHHHHHHHH--------------HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH-HHHHHHTTTS
T ss_pred HHHHHHHHHHH--------------HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH-HHHHHHHhcC
Confidence 00011111100 00112349999999999999986 9999999985 999875 44444444 4
Q ss_pred CCEEEEEecCcc
Q 040758 738 GITYISVGHRRT 749 (788)
Q Consensus 738 g~TvI~IaHr~~ 749 (788)
+.++|+..|++.
T Consensus 157 ~iilV~~K~Dl~ 168 (301)
T 2qnr_A 157 NIVPVIAKADTL 168 (301)
T ss_dssp CEEEEECCGGGS
T ss_pred CEEEEEEeCCCC
Confidence 788899999963
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-18 Score=172.37 Aligned_cols=177 Identities=15% Similarity=0.147 Sum_probs=91.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCCceEEEeec----cCcccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW-----SDGRGKITFYVK----DREETD 568 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~-----~p~~G~I~~~~~----~~~~i~ 568 (788)
.|+++|++|.|+ .+++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.+.+. ++..+
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l- 76 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL- 76 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-
Confidence 478999999995 357888 899999999999999999999999999998 788887754210 00000
Q ss_pred cCCCccchhhhcccccccchhc--c---cccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccch
Q 040758 569 AHTSDVDSLEVNSQNMNGELTR--S---MNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFL 642 (788)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~--~---~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i 642 (788)
.|..+.... + ...+++.+++++|+...+++ ++..++..
T Consensus 77 -------------~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~----------------------- 120 (210)
T 1pui_A 77 -------------VDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH----------------------- 120 (210)
T ss_dssp -------------EECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS-----------------------
T ss_pred -------------EECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC-----------------------
Confidence 000000000 0 00000011111111100000 00000000
Q ss_pred hhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHH-HHHHHHHccCCCEEEEecCCCC
Q 040758 643 TSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQR-LAFARLLLSKPQIVLLDESTSA 721 (788)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQR-iaIARALl~~p~iLiLDEpTSa 721 (788)
.....+.++.+.+...++.... .......+|+||||| +..+|+++++|+++++||||||
T Consensus 121 ------------~~~~~~~~~~~~~~~~~~~~~~--------v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 180 (210)
T 1pui_A 121 ------------PLKDLDQQMIEWAVDSNIAVLV--------LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSS 180 (210)
T ss_dssp ------------CCCHHHHHHHHHHHHTTCCEEE--------EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBT
T ss_pred ------------CCchhHHHHHHHHHHcCCCeEE--------EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEee
Confidence 0000112344444443332110 122344599999999 8999999999999999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 040758 722 LDEANEAHLYEQIEA 736 (788)
Q Consensus 722 LD~~se~~i~~~L~~ 736 (788)
+|.....++.+.|.+
T Consensus 181 l~~~~~~~l~~~l~~ 195 (210)
T 1pui_A 181 LKKQGVDKLRQKLDT 195 (210)
T ss_dssp TTTBSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 999999999988864
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.2e-17 Score=182.57 Aligned_cols=165 Identities=9% Similarity=0.096 Sum_probs=99.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
+.|.++||++.|+ ++.+++|+||+| +|||+||||||||+++|+|...|..|. ++..+.
T Consensus 10 ~~l~~~~l~~~y~--~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~------~~~~~~-------- 67 (418)
T 2qag_C 10 GYVGFANLPNQVY--RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEY------PGPSHR-------- 67 (418)
T ss_dssp -----CCCCCCTT--TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCC------CSCC----------
T ss_pred CcEEEEecceeEC--CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCC------CCcccC--------
Confidence 5699999999996 467999999998 999999999999999999998866551 111110
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
. ... ..+..+++++|++.++ ..||.||+.++.....
T Consensus 68 ----~-------~~t--~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------------------------------ 104 (418)
T 2qag_C 68 ----I-------KKT--VQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------------------------------ 104 (418)
T ss_dssp --------------C--CEEEEEECC------CEEEEEEECC--------------------------------------
T ss_pred ----C-------ccc--eeeeeEEEEEecCCcccceeeeechhhhhhccc------------------------------
Confidence 0 000 1124589999988776 4589998877632100
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC---EEEEecCC-CCCCHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ---IVLLDEST-SALDEANEAHLY 731 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~---iLiLDEpT-SaLD~~se~~i~ 731 (788)
......+.+.++. .++.+++||++||||++++|+ +|++|||| ++||+... .++
T Consensus 105 -~~~~~~i~~~i~~---------------------~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~-~~l 161 (418)
T 2qag_C 105 -SNCWQPVIDYIDS---------------------KFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI-EFM 161 (418)
T ss_dssp ----CHHHHHHHHH---------------------HHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH-HHH
T ss_pred -hhhHHHHHHHHHH---------------------HHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH-HHH
Confidence 0001122222221 166777889999999999999 99999999 69998764 444
Q ss_pred HHHHhcCCEEEEEecCcch
Q 040758 732 EQIEAAGITYISVGHRRTL 750 (788)
Q Consensus 732 ~~L~~~g~TvI~IaHr~~~ 750 (788)
+.|.. +.++|+|.|..++
T Consensus 162 k~L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 162 KRLHE-KVNIIPLIAKADT 179 (418)
T ss_dssp HHHTT-TSEEEEEEESTTS
T ss_pred HHHhc-cCcEEEEEEcccC
Confidence 55554 7888888887654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-19 Score=181.59 Aligned_cols=156 Identities=14% Similarity=0.197 Sum_probs=97.2
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC-------------CCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS-------------DGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-------------p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
++|++++|+||||||||||+++|+|+++ |..|++ + |.++. . .
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~--~---g~~~~-----------------~---~ 56 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE--D---GKDYY-----------------F---V 56 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC--B---TTTBE-----------------E---C
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCccc--C---CceEE-----------------E---c
Confidence 5899999999999999999999999986 566652 2 22221 0 0
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
+...+++. ++|+++++.+++.+|+ ||... +++.++++..
T Consensus 57 ~~~~~~~~---i~~~~~l~~~~~~~n~-~g~~~-------------------------------------~~i~~~~~~~ 95 (198)
T 1lvg_A 57 TREMMQRD---IAAGDFIEHAEFSGNL-YGTSK-------------------------------------EAVRAVQAMN 95 (198)
T ss_dssp CHHHHHHH---HHHTCEEEEEEETTEE-EEEEH-------------------------------------HHHHHHHHTT
T ss_pred cHHHHHHH---HHcCCCEeeeeecCcc-CCCCH-------------------------------------HHHHHHHHcC
Confidence 11122222 3789999999999998 76321 1222222211
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecC
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFAR-LLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHR 747 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR-ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr 747 (788)
......-.++|+++.... ++ .|| +++.+|++++|||+|+++|.++|+.|++.|.+ .+ +.++|
T Consensus 96 ~~~~~~~~~~g~~~~~~~----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~- 160 (198)
T 1lvg_A 96 RICVLDVDLQGVRSIKKT----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK- 160 (198)
T ss_dssp CEEEEECCHHHHHHHTTS----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG-
T ss_pred CcEEEECCHHHHHHHHhc----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh-
Confidence 100000001222222110 12 567 89999999999999999999999999998864 23 35567
Q ss_pred cchhhcCCEEEEEcc
Q 040758 748 RTLYDFHKRVLRIST 762 (788)
Q Consensus 748 ~~~~~~~D~Ilvl~~ 762 (788)
+. ..+|+|+++++
T Consensus 161 -~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 161 -EP-GLFDLVIINDD 173 (198)
T ss_dssp -ST-TTCSEEEECSS
T ss_pred -cc-CCceEEEECCC
Confidence 33 77899988864
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-17 Score=177.13 Aligned_cols=139 Identities=16% Similarity=0.104 Sum_probs=102.5
Q ss_pred cceeee-eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCC----ce-EEEeeccCcccccCCCccchhhhcccccc
Q 040758 514 TLVRDL-SLVINEKEHLLVMGPSGSGKTSLLRAMAGLW--SDGR----GK-ITFYVKDREETDAHTSDVDSLEVNSQNMN 585 (788)
Q Consensus 514 ~vL~~i-sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~--~p~~----G~-I~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 585 (788)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+ .
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~---~------------------ 176 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN---T------------------ 176 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS---C------------------
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC---C------------------
Confidence 457666 6899999999999999999999999999998 6766 67 7774321 1
Q ss_pred cchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHH
Q 040758 586 GELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIK 665 (788)
Q Consensus 586 ~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 665 (788)
..++++++++|++.++..++.+||.+....
T Consensus 177 --------~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~------------------------------------------ 206 (349)
T 1pzn_A 177 --------FRPERIREIAQNRGLDPDEVLKHIYVARAF------------------------------------------ 206 (349)
T ss_dssp --------CCHHHHHHHHHTTTCCHHHHGGGEEEEECC------------------------------------------
T ss_pred --------CCHHHHHHHHHHcCCCHHHHhhCEEEEecC------------------------------------------
Confidence 012447788898888777888887653100
Q ss_pred HHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH------------
Q 040758 666 ALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLL-------SKPQIVLLDESTSALDEAN------------ 726 (788)
Q Consensus 666 ~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl-------~~p~iLiLDEpTSaLD~~s------------ 726 (788)
-|++|+|++.++++++ .+|++||+||||+++|++.
T Consensus 207 --------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~ 260 (349)
T 1pzn_A 207 --------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQK 260 (349)
T ss_dssp --------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHH
T ss_pred --------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHH
Confidence 1456777777777777 6899999999999999862
Q ss_pred HHHHHHHHH----hcCCEEEEEecCcc
Q 040758 727 EAHLYEQIE----AAGITYISVGHRRT 749 (788)
Q Consensus 727 e~~i~~~L~----~~g~TvI~IaHr~~ 749 (788)
...+...|. +.|+|+|+++|...
T Consensus 261 ~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 261 LAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 123333333 25999999999754
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=9.8e-16 Score=151.42 Aligned_cols=75 Identities=21% Similarity=0.306 Sum_probs=67.1
Q ss_pred cCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEE
Q 040758 687 EWSSVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
.+...||||||||++|||+|+ ++|+++||||||++||+.++..+.+.|++ .+.++|+|||+..+...||+++.+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v 139 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGV 139 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEE
Confidence 345679999999999999996 55799999999999999999999999875 578999999999888999999977
Q ss_pred c
Q 040758 761 S 761 (788)
Q Consensus 761 ~ 761 (788)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=185.14 Aligned_cols=90 Identities=29% Similarity=0.354 Sum_probs=76.1
Q ss_pred HHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHh---c
Q 040758 663 LIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIEA---A 737 (788)
Q Consensus 663 ~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~~---~ 737 (788)
..+.|..+++++.. ......+|||||||||+|||||+++|+ +|||||||++||+.....+.+.|++ .
T Consensus 444 ~~~~L~~vgL~~l~--------l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~ 515 (916)
T 3pih_A 444 RLEFLVDVGLEYLT--------LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL 515 (916)
T ss_dssp HHHHHHTTTCTTCB--------TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCcccc--------ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhc
Confidence 34556666655421 233456799999999999999999887 9999999999999999999998875 5
Q ss_pred CCEEEEEecCcchhhcCCEEEEE
Q 040758 738 GITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 738 g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
|.|+|+|+|+++++..||+|++|
T Consensus 516 G~TvivVtHd~~~~~~aD~ii~l 538 (916)
T 3pih_A 516 GNTVIVVEHDEEVIRNADHIIDI 538 (916)
T ss_dssp TCEEEEECCCHHHHHTCSEEEEE
T ss_pred CCEEEEEeCCHHHHHhCCEEEEE
Confidence 89999999999988889999999
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=154.41 Aligned_cols=167 Identities=10% Similarity=0.050 Sum_probs=107.8
Q ss_pred CccceeeeeE-EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 512 KATLVRDLSL-VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 512 ~~~vL~~isl-~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
+.+.|+++.. .+++|+.++|+||||||||||++.|++...+.+|.+.+.+.+...-
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~----------------------- 64 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRD----------------------- 64 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHH-----------------------
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHH-----------------------
Confidence 4567899988 8999999999999999999999999998888888888743221000
Q ss_pred ccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 591 SMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
........+++.+|+... +++.+ +
T Consensus 65 ~~~~~~~~~~~~~~~~~~------~~~~~----------------------~---------------------------- 88 (235)
T 2w0m_A 65 SIIRQAKQFNWDFEEYIE------KKLII----------------------I---------------------------- 88 (235)
T ss_dssp HHHHHHHHTTCCCGGGBT------TTEEE----------------------E----------------------------
T ss_pred HHHHHHHHhcchHHHHhh------CCEEE----------------------E----------------------------
Confidence 000000012222222100 00000 0
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHHH----hcCCEEE
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQ--IVLLDESTSAL--DEANEAHLYEQIE----AAGITYI 742 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~--iLiLDEpTSaL--D~~se~~i~~~L~----~~g~TvI 742 (788)
+...... +.... ....|.+|.++...+.+...+|+ ++++||||+.+ |+.....+.+.|+ +.|.|+|
T Consensus 89 --~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi 162 (235)
T 2w0m_A 89 --DALMKEK-EDQWS---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIY 162 (235)
T ss_dssp --ECCC-----CTTB---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEE
T ss_pred --ecccccc-Cceee---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEE
Confidence 0000000 00000 11259999999888888888999 99999999888 9877777777664 3589999
Q ss_pred EEecCc--------c-hhhcCCEEEEEccC
Q 040758 743 SVGHRR--------T-LYDFHKRVLRISTV 763 (788)
Q Consensus 743 ~IaHr~--------~-~~~~~D~Ilvl~~g 763 (788)
+++|.. . +...||+|++|+..
T Consensus 163 ~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 163 ATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp EEEC-----------CHHHHCSEEEEEEEE
T ss_pred EEeccCcccccccccchheeeeEEEEEEEE
Confidence 999997 2 45679999999865
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-18 Score=169.26 Aligned_cols=37 Identities=24% Similarity=0.304 Sum_probs=31.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEEeecc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITFYVKD 563 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~~~~~ 563 (788)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 689999999999999999999999998 8999996544
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.56 E-value=3.7e-15 Score=179.51 Aligned_cols=89 Identities=26% Similarity=0.332 Sum_probs=74.8
Q ss_pred HHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh---cCC
Q 040758 665 KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA---AGI 739 (788)
Q Consensus 665 ~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~---~g~ 739 (788)
+.|..+|++++. .+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|++ .|.
T Consensus 486 ~~L~~vGL~~l~--------ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~ 557 (972)
T 2r6f_A 486 GFLQNVGLDYLT--------LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 557 (972)
T ss_dssp HHHHHHTCTTSB--------SSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTC
T ss_pred HHhhhCCCCccc--------cCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCC
Confidence 346666665431 12345679999999999999999985 99999999999999999998887754 699
Q ss_pred EEEEEecCcchhhcCCEEEEEc
Q 040758 740 TYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 740 TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
|||+|+||++.++.||+|++|.
T Consensus 558 TVIvVeHdl~~i~~ADrIi~Lg 579 (972)
T 2r6f_A 558 TLIVVEHDEDTMLAADYLIDIG 579 (972)
T ss_dssp EEEEECCCHHHHHSCSEEEEEC
T ss_pred EEEEEecCHHHHHhCCEEEEeC
Confidence 9999999999888999999994
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-15 Score=183.36 Aligned_cols=73 Identities=12% Similarity=0.079 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH----HHHHHHh-cCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 691 VLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAH----LYEQIEA-AGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 691 ~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~----i~~~L~~-~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
++|+|+++ ++.+...+.+|+++||||||+|+|+..... +.+.+.+ .|.|+|++||+.++..+||++..+.+|.
T Consensus 669 tf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~ 746 (800)
T 1wb9_A 669 TFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVH 746 (800)
T ss_dssp -CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEE
T ss_pred hhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEE
Confidence 36777765 444445689999999999988888765544 3444555 4999999999998888888765555543
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=9.2e-15 Score=175.70 Aligned_cols=77 Identities=26% Similarity=0.334 Sum_probs=69.4
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHH---hcCCEEEEEecCcchhhcCCEEEEE
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIE---AAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~---~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+....+|||||||||+||++|..+| ++|||||||++||+...+.+.+.|+ +.|.|+|+|+||+++++.||+|++|
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~l 453 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDV 453 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEE
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEe
Confidence 3446789999999999999999999 5999999999999999999988765 4699999999999988899999999
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
..
T Consensus 454 gp 455 (842)
T 2vf7_A 454 GP 455 (842)
T ss_dssp CS
T ss_pred CC
Confidence 54
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-14 Score=165.80 Aligned_cols=76 Identities=18% Similarity=0.151 Sum_probs=69.9
Q ss_pred CCCC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccC
Q 040758 689 SSVL-SLGEQQRLAFARLLLSKP--QIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTV 763 (788)
Q Consensus 689 g~~L-SGGQrQRiaIARALl~~p--~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g 763 (788)
...| ||||||||+|||||+.+| ++|||||||++||+.+...|.+.|++ .|+|||+|||+++++..||++++|+++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 4567 999999999999999999 99999999999999999999988865 489999999999988889999999876
Q ss_pred C
Q 040758 764 D 764 (788)
Q Consensus 764 ~ 764 (788)
.
T Consensus 474 ~ 474 (517)
T 4ad8_A 474 V 474 (517)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-15 Score=153.44 Aligned_cols=128 Identities=13% Similarity=0.107 Sum_probs=86.6
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
.-+.++|++++|+||||||||||+++|+|+++| ..|.|.+++. +.. ...++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr---~~~------------------------~~e~~ 62 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTR---QPR------------------------PGEVH 62 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECS---CCC------------------------TTCCB
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCC---CCC------------------------ccccc
Confidence 346789999999999999999999999999986 6788877422 110 01235
Q ss_pred eEEEEccccccCCC-CH----HHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 598 GVFFLPQRPYMVLG-SL----RQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~-Ti----~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
.++|+||++.+|.. ++ .||+.+..
T Consensus 63 gi~y~fq~~~~f~~~~~~~~f~E~~~~~~--------------------------------------------------- 91 (219)
T 1s96_A 63 GEHYFFVNHDEFKEMISRDAFLEHAEVFG--------------------------------------------------- 91 (219)
T ss_dssp TTTBEECCHHHHHHHHHTTCEEEEEEETT---------------------------------------------------
T ss_pred CceEEECCHHHHHHHHhcCHHHHHHHHHh---------------------------------------------------
Confidence 68999999876643 22 12221100
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhh
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYD 752 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~ 752 (788)
.+.|-.+++ ++.++..++++||| ||+.+...+.+.+. .++|+++++|+++.+.
T Consensus 92 ------------------~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~ 144 (219)
T 1s96_A 92 ------------------NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELD 144 (219)
T ss_dssp ------------------EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHH
T ss_pred ------------------ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHH
Confidence 011111222 34555668999999 99999999999877 5899999999987654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=146.78 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=54.6
Q ss_pred CChh--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------HHHHHHHH----hcCCEEEEEecCcc-------
Q 040758 692 LSLG--EQQRLAFARLLLSK-PQIVLLDESTSALDEANE--------AHLYEQIE----AAGITYISVGHRRT------- 749 (788)
Q Consensus 692 LSGG--QrQRiaIARALl~~-p~iLiLDEpTSaLD~~se--------~~i~~~L~----~~g~TvI~IaHr~~------- 749 (788)
+|++ ++|+++.+|+++++ |+++|+||||+.+|+..+ ..+.+.|+ +.|.|+|+++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 3444 36789999999986 999999999999997432 23333343 35999999999753
Q ss_pred -------hhhcCCEEEEEccC
Q 040758 750 -------LYDFHKRVLRISTV 763 (788)
Q Consensus 750 -------~~~~~D~Ilvl~~g 763 (788)
....||.+++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 24579999999875
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-14 Score=147.67 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=91.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
-+++|++++|+||||||||||++.+++... .|++.+ +.+. .....+.|
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~----g~~~--------------------------~~~~~v~~ 73 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL----EVGE--------------------------LPTGPVIY 73 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT----CCCC--------------------------CCCCCEEE
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC----CCcc--------------------------CCCccEEE
Confidence 478999999999999999999999998654 465532 1110 00234667
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
+..+... ..+... ++..+. ........+.++.+.+....
T Consensus 74 ~~~e~~~--~~~~~r----------------~~~~g~------------------~~~~~~~~~~~~~l~l~~~~----- 112 (279)
T 1nlf_A 74 LPAEDPP--TAIHHR----------------LHALGA------------------HLSAEERQAVADGLLIQPLI----- 112 (279)
T ss_dssp EESSSCH--HHHHHH----------------HHHHHT------------------TSCHHHHHHHHHHEEECCCT-----
T ss_pred EECCCCH--HHHHHH----------------HHHHHh------------------hcChhhhhhccCceEEeecC-----
Confidence 6554321 001000 000000 01123334455555543221
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHH----hcCCEEEEEecCcch
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS--ALDEANE---AHLYEQIE----AAGITYISVGHRRTL 750 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS--aLD~~se---~~i~~~L~----~~g~TvI~IaHr~~~ 750 (788)
+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+.+.|+ +.|+|+|+|+|....
T Consensus 113 ----~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~ 183 (279)
T 1nlf_A 113 ----GSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKG 183 (279)
T ss_dssp ----TSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC---
T ss_pred ----CCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCc
Confidence 234567999998865 68899999999999999 9997543 55555553 359999999998643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-15 Score=149.01 Aligned_cols=164 Identities=21% Similarity=0.095 Sum_probs=95.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
.+++|++++|+||||||||||+++|+|. |+.|.|.+++. ++. .....+..++|
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d---~~~----------------------~~~~~~~~~~~ 57 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSD---DLW----------------------GYIKHGRIDPW 57 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTT---HHH----------------------HTCCSSCCCTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEccc---chh----------------------hhhhcccccCC
Confidence 4789999999999999999999999998 78899998532 221 00011233677
Q ss_pred EccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCC
Q 040758 602 LPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNS 681 (788)
Q Consensus 602 v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g 681 (788)
++|++. .+.|+.+|+.+.... ..+ .+....+ +.+. ....+ +.+..
T Consensus 58 ~~~~~~-~~~~v~~~l~~~~~~--------~~~-~~~~~~~------~~~~------~~~~l-~~~~~------------ 102 (191)
T 1zp6_A 58 LPQSHQ-QNRMIMQIAADVAGR--------YAK-EGYFVIL------DGVV------RPDWL-PAFTA------------ 102 (191)
T ss_dssp SSSHHH-HHHHHHHHHHHHHHH--------HHH-TSCEEEE------CSCC------CTTTT-HHHHT------------
T ss_pred ccchhh-hhHHHHHHHHHHHHH--------Hhc-cCCeEEE------eccC------cHHHH-HHHHh------------
Confidence 888764 345777777542100 000 0000000 0000 00000 00000
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEecCcchhhcCCEEE
Q 040758 682 LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHRRTLYDFHKRVL 758 (788)
Q Consensus 682 ~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~--g~TvI~IaHr~~~~~~~D~Il 758 (788)
.......+|+|++||+++||++.++|+++ +|++..+.+.+.+... -..+++.++..+....+++|+
T Consensus 103 ---~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i~ 170 (191)
T 1zp6_A 103 ---LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGKDTDQALQSAI 170 (191)
T ss_dssp ---TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTCCTTTTTTTTH
T ss_pred ---cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCCCHHHHHHHHH
Confidence 01123459999999999999999999987 6888777777776541 123445555444444455543
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-14 Score=162.86 Aligned_cols=189 Identities=13% Similarity=0.122 Sum_probs=109.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
.+++++ ++.|+ +.+ |+++||++++|++ +|||||||||||||+|+|+|+. ++|.+....
T Consensus 16 ~l~~~~-~~~y~--~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~-------- 75 (427)
T 2qag_B 16 TVPLAG-HVGFD--SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHT-------- 75 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------C--------
T ss_pred eEEEee-EEEEC--Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCC--------
Confidence 366666 78885 345 9999999999999 9999999999999999999984 211111000
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
.....++.++|++|++.++ ..|+.||+.|+..... ....+. ...+
T Consensus 76 ---------------~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~-~~~~~~-----i~~~------------- 121 (427)
T 2qag_B 76 ---------------QPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINK-EDSYKP-----IVEF------------- 121 (427)
T ss_dssp ---------------CSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCH-HHHSHH-----HHHH-------------
T ss_pred ---------------CccceEeeEEEEeecCccccccchhhhhhhhhcccc-chhhhH-----HHHH-------------
Confidence 0011234699999999887 4599999999753210 000000 0000
Q ss_pred CCCCChHHHHHHHHhc-cccccccc-CCC-----ccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 655 SSKPSTDDLIKALEDV-KLGYILPR-LNS-----LDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~-~l~~~~~~-~~g-----~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
-.+.+.+.+... ++..-+.. .+. +--..+.+..|+-.+ +.|+++|..+++++++||||..|.+...
T Consensus 122 ----i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~ 194 (427)
T 2qag_B 122 ----IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSEL 194 (427)
T ss_dssp ----HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHH
T ss_pred ----HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHH
Confidence 011223333332 22110000 000 000112234577666 8999999999999999999999988766
Q ss_pred HHHHHHHH----hcCCEEEEEecC
Q 040758 728 AHLYEQIE----AAGITYISVGHR 747 (788)
Q Consensus 728 ~~i~~~L~----~~g~TvI~IaHr 747 (788)
..+.+.+. ..|.+++.++.+
T Consensus 195 ~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 195 TKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHcCCcEEecCCC
Confidence 66655554 469999998864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.1e-15 Score=163.42 Aligned_cols=131 Identities=13% Similarity=0.094 Sum_probs=87.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEcc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQ 604 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q 604 (788)
++.+++|+|+||||||||.++|.+++.+. | . . ++.+.+|+|
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-------------------------------~-~~~~~iv~~ 70 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-------------------------------G-EKSIGYASI 70 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-------------------------------G-GSCEEEEEG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-------------------------------C-CceEEEecc
Confidence 57899999999999999999999988753 1 0 0 123667799
Q ss_pred ccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCccc
Q 040758 605 RPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDT 684 (788)
Q Consensus 605 ~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t 684 (788)
|.++++.++++|+.++........ ..+ .....+.+.+.+.++.+. .|++|
T Consensus 71 D~f~~~~~~~~~l~~~~~~~~l~~------~~g----------------~p~a~d~~~l~~~l~~l~--------~g~~t 120 (290)
T 1odf_A 71 DDFYLTHEDQLKLNEQFKNNKLLQ------GRG----------------LPGTHDMKLLQEVLNTIF--------NNNEH 120 (290)
T ss_dssp GGGBCCHHHHHHHHHHTTTCGGGS------SSC----------------STTSBCHHHHHHHHHHHT--------C----
T ss_pred ccccCChHHHHHHhccccccchhh------hcc----------------CcchhHHHHHHHHHHHhh--------ccCcc
Confidence 999999999999977532100000 000 000112334444454432 23332
Q ss_pred -------cccCCCCCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 040758 685 -------TYEWSSVLSLGEQQRLAFA--RLLLSKPQIVLLDESTSALDEAN 726 (788)
Q Consensus 685 -------~~e~g~~LSGGQrQRiaIA--RALl~~p~iLiLDEpTSaLD~~s 726 (788)
...++..+||||+||+++| |++ +|+|||+||+|+++|++.
T Consensus 121 ~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 121 PDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp --CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 1345678999999999998 666 999999999999999864
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-13 Score=139.67 Aligned_cols=40 Identities=15% Similarity=0.069 Sum_probs=34.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCC-----CCceEEEee
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG--LWSD-----GRGKITFYV 561 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p-----~~G~I~~~~ 561 (788)
-+++|++++|+||||||||||++.|++ ..+| ..|.+++++
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 589999999999999999999999999 5655 567777743
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.39 E-value=5.7e-15 Score=160.04 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=97.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC--------CCCCceEEEeeccCcccccCCCccchhhhcccccc-cchhc-ccccCc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW--------SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMN-GELTR-SMNRNS 596 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~--------~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~r 596 (788)
++++|+|+||||||||+|.|+|+. .|+.|+|.+||.+..... ... .++. +---+ ....++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~-----~~~-----~el~~gCicc~~~~~~~ 74 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRA-----TQI-----KTLTNGCICCSRSNELE 74 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTS-----CEE-----EEETTSCEEECTTSCHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCC-----CCE-----EEECCCceEEcccHHHH
Confidence 589999999999999999999998 789999999754432210 000 0000 00000 011234
Q ss_pred ceEEEE---cccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 597 RGVFFL---PQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 597 ~~i~~v---~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
+.++++ +|++.+ |+.++.||..++.+.. +.... ... .+. -....+
T Consensus 75 ~~l~~l~~~~q~~~~~~~~~v~E~~~l~~p~~----~~~~~--------~~~----------------~~~---~~~~~l 123 (318)
T 1nij_A 75 DALLDLLDNLDKGNIQFDRLVIECTGMADPGP----IIQTF--------FSH----------------EVL---CQRYLL 123 (318)
T ss_dssp HHHHHHHHHHHHTSCCCSEEEEEEETTCCHHH----HHHHH--------HHS----------------HHH---HHHEEE
T ss_pred HHHHHHHhHHhcCCCCCCEEEEeCCCCCCHHH----HHHHH--------hcC----------------ccc---cCeEEE
Confidence 457777 687764 5778999887764321 00000 000 000 000111
Q ss_pred ccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCc
Q 040758 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRR 748 (788)
Q Consensus 673 ~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~ 748 (788)
+......+..+.... ..+||+||+||+..+++++.+|+++ ||| +.+.+.+++ .+.|+++++|+.
T Consensus 124 ~~~l~~vd~~~~~~~-~~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~ 189 (318)
T 1nij_A 124 DGVIALVDAVHADEQ-MNQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGD 189 (318)
T ss_dssp EEEEEEEETTTHHHH-HHHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSC
T ss_pred CCEEEEEEHHHHHHH-HhhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccC
Confidence 111111110000000 1148999999999999999999987 998 455555543 589999999974
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-15 Score=143.77 Aligned_cols=89 Identities=17% Similarity=-0.001 Sum_probs=69.9
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhc
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVN 580 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~ 580 (788)
.+|+++.|+ ++.+++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|. ++.
T Consensus 10 ~~~~~~~~g--~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~---~i~------------ 71 (158)
T 1htw_A 10 DEFSMLRFG--KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTY---TLV------------ 71 (158)
T ss_dssp SHHHHHHHH--HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTT---TCE------------
T ss_pred CHHHHHHHH--HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCE---eee------------
Confidence 356677774 457899999999999999999999999999999999999 99999998432 221
Q ss_pred ccccccchhcccccCcceEEEEccccccCCCCHHHHhc-CC
Q 040758 581 SQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI-YP 620 (788)
Q Consensus 581 ~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~-~~ 620 (788)
. .. ..++ +++|++.+|.-|+.||+. +|
T Consensus 72 -----~----~~-~~~~---~~~q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 72 -----E----EY-NIAG---KMIYHFDLYRLADPEELEFMG 99 (158)
T ss_dssp -----E----EE-EETT---EEEEEEECTTCSCTTHHHHST
T ss_pred -----e----ec-cCCC---cceeccccccCCcHHHHHHcC
Confidence 0 00 1112 789999999779999994 44
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.8e-15 Score=162.69 Aligned_cols=92 Identities=14% Similarity=0.165 Sum_probs=71.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++|+++.|. .+.+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.+.|.....
T Consensus 29 ~ie~~~~~~~~~--~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~--------- 97 (337)
T 2qm8_A 29 LAESRRADHRAA--VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTR--------- 97 (337)
T ss_dssp HHTCSSHHHHHH--HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGS---------
T ss_pred HHeeCCcccccC--hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccc---------
Confidence 366778888884 457899999999999999999999999999999999999999999999655432110
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL 610 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~ 610 (788)
. .......+..+++++|++.+|.
T Consensus 98 -~---------~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 98 -T---------GGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp -S---------CCCSSCCGGGSTTGGGCTTEEE
T ss_pred -c---------ccchHHHhhhheeeccCccccc
Confidence 0 0011123556999999998885
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.7e-14 Score=157.29 Aligned_cols=88 Identities=11% Similarity=0.083 Sum_probs=64.9
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRN 595 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (788)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.+++.|..... ...+......
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~a-----------------a~eQL~~~~~ 345 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAA-----------------AVEQLQVWGQ 345 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHH-----------------HHHHHHHHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchh-----------------hHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999643321100 0000000012
Q ss_pred cceEEEEccccccC-CCCHHHHhcCC
Q 040758 596 SRGVFFLPQRPYMV-LGSLRQQLIYP 620 (788)
Q Consensus 596 r~~i~~v~Q~~~lf-~~Ti~eNi~~~ 620 (788)
|++|+|++|++.++ ..|+++|+.++
T Consensus 346 r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 346 RNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp HHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred hcCceEEecccCcCHHHHHHHHHHHH
Confidence 45699999998765 45889998764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-12 Score=144.54 Aligned_cols=75 Identities=31% Similarity=0.356 Sum_probs=67.7
Q ss_pred CCCCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEE
Q 040758 689 SSVLSLGEQQRL------AFARLLLSK-PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLR 759 (788)
Q Consensus 689 g~~LSGGQrQRi------aIARALl~~-p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilv 759 (788)
...||||||||+ ++||++..+ |++|||||||++||+.....+.+.|.+ .+.++|+|||++++...||++++
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~ 357 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIIN 357 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEE
Confidence 357999999988 668999999 999999999999999999999999976 35799999999988889999999
Q ss_pred EccC
Q 040758 760 ISTV 763 (788)
Q Consensus 760 l~~g 763 (788)
|++.
T Consensus 358 l~k~ 361 (371)
T 3auy_A 358 VKKD 361 (371)
T ss_dssp EEES
T ss_pred EEec
Confidence 9863
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-14 Score=147.26 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=97.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
.++|++++|+||||||||||+++|+|+++|+ |. .+|+|
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g~-----------------------------------------~~g~v 56 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-GL-----------------------------------------PAEVV 56 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-TC-----------------------------------------CEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-CC-----------------------------------------ceEEE
Confidence 4789999999999999999999999998865 30 15667
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCc
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL 682 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 682 (788)
+|+.+.+..+..+|+..... ... +. ..+.+.+.+.++.+... +.+
T Consensus 57 ~~d~~~~~~~~~~~~~~~~~-~~~-------------~~---------------~~~~~~~~~~l~~l~~~------~~i 101 (208)
T 3c8u_A 57 PMDGFHLDNRLLEPRGLLPR-KGA-------------PE---------------TFDFEGFQRLCHALKHQ------ERV 101 (208)
T ss_dssp ESGGGBCCHHHHGGGTCGGG-TTS-------------GG---------------GBCHHHHHHHHHHHHHC------SCE
T ss_pred ecCCCcCCHHHHHHhccccc-CCC-------------Cc---------------hhhHHHHHHHHHHHhcC------Cce
Confidence 77776666555555431000 000 00 01122333333333222 112
Q ss_pred ccc-ccCCCCCChhHHHHHHHH-HHHccCCCEEEEecCC-----------CCCCHHHHHHHHHHHHh---cCCEEEEEec
Q 040758 683 DTT-YEWSSVLSLGEQQRLAFA-RLLLSKPQIVLLDEST-----------SALDEANEAHLYEQIEA---AGITYISVGH 746 (788)
Q Consensus 683 ~t~-~e~g~~LSGGQrQRiaIA-RALl~~p~iLiLDEpT-----------SaLD~~se~~i~~~L~~---~g~TvI~IaH 746 (788)
+.. .+++..+|+||+||+++| |+++.++.++++|||. ..||...+..+.+.+++ .|.|.--+.|
T Consensus 102 ~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~t~~~~~~ 181 (208)
T 3c8u_A 102 IYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVA 181 (208)
T ss_dssp EEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred ecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 222 466777999999999999 9999999999999985 44677777767666654 3666665555
Q ss_pred Cc
Q 040758 747 RR 748 (788)
Q Consensus 747 r~ 748 (788)
+.
T Consensus 182 ~~ 183 (208)
T 3c8u_A 182 RA 183 (208)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.8e-12 Score=146.00 Aligned_cols=73 Identities=23% Similarity=0.352 Sum_probs=67.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 690 SVLSLGEQQRLAFARLLL----SKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl----~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
..||||||||++||++|+ ++||++||||||++||+.....+.+.|.+ .+.++|+|||+..+...||++++|..
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~~ 411 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVYR 411 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEEE
Confidence 459999999999999999 68999999999999999999999998875 36899999999888888999999975
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-13 Score=147.85 Aligned_cols=170 Identities=14% Similarity=0.044 Sum_probs=102.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFF 601 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~ 601 (788)
..++|++++|+|||||||||+++.|+|++.|++|+|.+.|.|..... ...+......+.++.+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~-----------------a~eql~~~~~~~gv~~ 187 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAG-----------------AIEQLEEHAKRIGVKV 187 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTT-----------------HHHHHHHHHHHTTCEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccc-----------------hHHHHHHHHHHcCceE
Confidence 34789999999999999999999999999999999999765532211 0000000011234779
Q ss_pred EccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCC
Q 040758 602 LPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680 (788)
Q Consensus 602 v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 680 (788)
++|+..++. .|++||+.++... +.... +
T Consensus 188 v~q~~~~~p~~~v~e~l~~~~~~-------------~~d~v---------------------------------l----- 216 (328)
T 3e70_C 188 IKHSYGADPAAVAYDAIQHAKAR-------------GIDVV---------------------------------L----- 216 (328)
T ss_dssp ECCCTTCCHHHHHHHHHHHHHHH-------------TCSEE---------------------------------E-----
T ss_pred EeccccCCHHHHHHHHHHHHHhc-------------cchhh---------------------------------H-----
Confidence 999988775 4888888653110 00000 0
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH-hcCCEEEEEecCcch---------
Q 040758 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-AAGITYISVGHRRTL--------- 750 (788)
Q Consensus 681 g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~-~~g~TvI~IaHr~~~--------- 750 (788)
.|+.+... .-..=.++.-.++|++..++++++||.+|. .|... ..+.+. +.+.|.|++||--+.
T Consensus 217 -iDtaG~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~---~~~~~~~~~~it~iilTKlD~~a~~G~~l~~ 290 (328)
T 3e70_C 217 -IDTAGRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVE---QARQFNEAVKIDGIILTKLDADARGGAALSI 290 (328)
T ss_dssp -EEECCSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHH---HHHHHHHHSCCCEEEEECGGGCSCCHHHHHH
T ss_pred -Hhhccchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHH---HHHHHHHhcCCCEEEEeCcCCccchhHHHHH
Confidence 01110000 000011222348999999999999996665 33222 223344 369999999994321
Q ss_pred -hhcCCEEEEEccCCC
Q 040758 751 -YDFHKRVLRISTVDQ 765 (788)
Q Consensus 751 -~~~~D~Ilvl~~g~~ 765 (788)
....-.|..+..|..
T Consensus 291 ~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 291 SYVIDAPILFVGVGQG 306 (328)
T ss_dssp HHHHTCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 123457888887753
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.30 E-value=9.2e-13 Score=144.22 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=54.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-CCCceEEEe-eccCcccccCCCccchhhhcccccccchhccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS-DGRGKITFY-VKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~-p~~G~I~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
-++++++. .+|++++|+||||||||||+|+|+|+.. |..|+|.++ |.+ ..
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g---~~------------------------ 256 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLG---QH------------------------ 256 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--------------------------------------
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCC---cc------------------------
Confidence 57777775 4799999999999999999999999999 999999874 221 10
Q ss_pred ccCcceEEEEccccccCCC-CHHHHh
Q 040758 593 NRNSRGVFFLPQRPYMVLG-SLRQQL 617 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~~-Ti~eNi 617 (788)
...+..+++++|++++++. |++++.
T Consensus 257 tt~~~~i~~v~q~~~l~dtpgv~e~~ 282 (358)
T 2rcn_A 257 TTTAARLYHFPHGGDVIDSPGVREFG 282 (358)
T ss_dssp --CCCEEEECTTSCEEEECHHHHTCC
T ss_pred ceEEEEEEEECCCCEecCcccHHHhh
Confidence 0224569999999988865 888753
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2.7e-14 Score=159.93 Aligned_cols=62 Identities=26% Similarity=0.323 Sum_probs=52.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.++++++++.|+ ...+|+++ +. ++|+.++|+||||||||||+++|+|+++|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 467788887774 35688888 54 8999999999999999999999999999999999986543
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-12 Score=142.52 Aligned_cols=40 Identities=13% Similarity=0.082 Sum_probs=32.3
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHH--HhcCCCCCCc-----eEEEee
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRA--MAGLWSDGRG-----KITFYV 561 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~l--L~gl~~p~~G-----~I~~~~ 561 (788)
-|++|++++|+||||||||||++. +.+..+++.| .+++++
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 589999999999999999999994 4577776444 677643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.22 E-value=5.1e-14 Score=161.67 Aligned_cols=193 Identities=15% Similarity=0.069 Sum_probs=108.5
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+++++++.+++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++. .
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~--E~~-----------------------~ 301 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR--EIK-----------------------L 301 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC--CCC-----------------------C
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc--ccc-----------------------C
Confidence 357899999999999999999999999999999999999999999985322 111 0
Q ss_pred ccCcceEEEEccccccCC-CCHHHHhcCC---CCc------cccchhhHHHHhcC-CccchhhhhhhhhhccCCCCCChH
Q 040758 593 NRNSRGVFFLPQRPYMVL-GSLRQQLIYP---TWT------EEVKPASDAAKSAG-LVPFLTSAQKLENVGRKSSKPSTD 661 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~---~~~------~~~~~~~~aa~~~~-~~~~i~~~~~~~~~~~~~~~~~~~ 661 (788)
.....++++.|+..... .|..+++... +++ ....++..+.++++ -|..+. .. ...+..
T Consensus 302 -~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~s---------T~-Ha~~~~ 370 (511)
T 2oap_1 302 -YHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYS---------TL-HAGDIN 370 (511)
T ss_dssp -CCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEE---------EE-ECSSHH
T ss_pred -CCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccc---------cc-ccCCHH
Confidence 01234677777654221 2666665321 110 01111222211111 000000 00 011223
Q ss_pred HHHHHHHhc--ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---
Q 040758 662 DLIKALEDV--KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--- 736 (788)
Q Consensus 662 ~~~~~l~~~--~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--- 736 (788)
++.+.+... ++.... .+.++........+||||+||.++|. + | |++||+.+...+.+.+.+
T Consensus 371 ~~l~Rl~~~~~~v~~~l--~~~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~ 436 (511)
T 2oap_1 371 QMVYRLESEPLKVPRSM--LQFLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP 436 (511)
T ss_dssp HHHHHHHSTTTCCCGGG--GGGCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET
T ss_pred HHHHHHHhcccccHHHH--HhhccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc
Confidence 333333321 111100 01112111223458999999987751 2 7 999999877666555533
Q ss_pred cCCEEEE--EecCcchh-hcCC
Q 040758 737 AGITYIS--VGHRRTLY-DFHK 755 (788)
Q Consensus 737 ~g~TvI~--IaHr~~~~-~~~D 755 (788)
.++|+++ +||+++.+ +.|+
T Consensus 437 ~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 437 KEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp TTTEEEECSCCTHHHHHHHHHT
T ss_pred cCCEEEEcccHHHHHHHHHHcC
Confidence 5889875 89998654 3443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=4.9e-12 Score=124.81 Aligned_cols=42 Identities=14% Similarity=0.090 Sum_probs=36.1
Q ss_pred ccCCCEEEEecCCC-CCCHHHHHHHHHHHHh---cCCEEEEEecCc
Q 040758 707 LSKPQIVLLDESTS-ALDEANEAHLYEQIEA---AGITYISVGHRR 748 (788)
Q Consensus 707 l~~p~iLiLDEpTS-aLD~~se~~i~~~L~~---~g~TvI~IaHr~ 748 (788)
+.+|++|+||||++ ++|+.....+.+.+.. .|+++|++||..
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 45899999999996 8999999888887753 689999999985
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-13 Score=142.67 Aligned_cols=36 Identities=28% Similarity=0.445 Sum_probs=33.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I~~~ 560 (788)
++++++|+||||||||||+++|+ |+..|+.|+|.++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~ 64 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRE 64 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 47999999999999999999999 9999999998764
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=132.43 Aligned_cols=136 Identities=18% Similarity=0.227 Sum_probs=75.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc-CCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEEccc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG-LWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQR 605 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g-l~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~ 605 (788)
..+.|+||+|+||||++++++| ++.|+.|.+.++|.+.... ...+..+++++|+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~ 91 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA-------------------------SNRKLELNVVSSP 91 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------------------------------------CCEECS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc-------------------------ccccceeeeeccc
Confidence 3499999999999999999999 8999999999854321110 0113558888887
Q ss_pred cccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCcccc
Q 040758 606 PYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTT 685 (788)
Q Consensus 606 ~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~ 685 (788)
+++.- ...... ......+.+.++.+... .+++
T Consensus 92 ~~~~~---------~~~~~~-------------------------------~~~~~~~~~~i~~~~~~------~~~~-- 123 (354)
T 1sxj_E 92 YHLEI---------TPSDMG-------------------------------NNDRIVIQELLKEVAQM------EQVD-- 123 (354)
T ss_dssp SEEEE---------CCC-----------------------------------CCHHHHHHHHHHHTTT------TC----
T ss_pred ceEEe---------cHhhcC-------------------------------CcchHHHHHHHHHHHHh------cccc--
Confidence 75421 000000 00011122222221100 0000
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 686 YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 686 ~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
+.. .||| +..+|+++|||||++ ||+.+...+.+.+++ .+.++|++||+++
T Consensus 124 -~~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 124 -FQD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -----------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred -ccc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 000 3676 788999999999999 999999999999986 5789999999864
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.1e-14 Score=140.13 Aligned_cols=67 Identities=18% Similarity=0.154 Sum_probs=50.9
Q ss_pred ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecC-cch-hhcCCEEEEEc
Q 040758 693 SLGEQQRLAFAR------LLLSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHR-RTL-YDFHKRVLRIS 761 (788)
Q Consensus 693 SGGQrQRiaIAR------ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr-~~~-~~~~D~Ilvl~ 761 (788)
|+|++|++.++. +++++|+...+|| +||+..... ++.+.. .+.|+|.++|. ++. .+.||+|+ +
T Consensus 96 s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~ 169 (189)
T 2bdt_A 96 AKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--T 169 (189)
T ss_dssp HHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--H
T ss_pred hcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--h
Confidence 889999988888 8999999888884 799887777 666653 47899999998 654 46799998 8
Q ss_pred cCCC
Q 040758 762 TVDQ 765 (788)
Q Consensus 762 ~g~~ 765 (788)
+|+.
T Consensus 170 ~g~~ 173 (189)
T 2bdt_A 170 NPRF 173 (189)
T ss_dssp CGGG
T ss_pred CCcE
Confidence 8865
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.5e-11 Score=133.69 Aligned_cols=36 Identities=31% Similarity=0.339 Sum_probs=33.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
-++++|+++.|+.++|||+||||||||++.|++..+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 489999999999999999999999999999999854
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.5e-13 Score=146.41 Aligned_cols=60 Identities=20% Similarity=0.272 Sum_probs=55.6
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEE-------------------eCCCEEEEEcCCCCcHHHHHHHHhcCCC--CCC
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVI-------------------NEKEHLLVMGPSGSGKTSLLRAMAGLWS--DGR 554 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i-------------------~~Ge~iaIvG~sGsGKSTLl~lL~gl~~--p~~ 554 (788)
.+.|+++||++.|. ++++++++++ ++|+++||+||||||||||+++|+|++. |++
T Consensus 35 ~~~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~ 110 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEH 110 (308)
T ss_dssp CTTCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTC
T ss_pred ccccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCC
Confidence 35699999999993 6899999998 9999999999999999999999999998 999
Q ss_pred ceEEE
Q 040758 555 GKITF 559 (788)
Q Consensus 555 G~I~~ 559 (788)
|+|.+
T Consensus 111 G~i~v 115 (308)
T 1sq5_A 111 RRVEL 115 (308)
T ss_dssp CCEEE
T ss_pred CeEEE
Confidence 99988
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.2e-10 Score=111.98 Aligned_cols=35 Identities=29% Similarity=0.484 Sum_probs=30.8
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+|+++ +|+.++|+||||||||||++++++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 45666 8999999999999999999999998876 45
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-13 Score=139.43 Aligned_cols=146 Identities=18% Similarity=0.137 Sum_probs=92.3
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhccc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSM 592 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (788)
..+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.+..+.. .
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~-----------------------~ 85 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMY-----------------------V 85 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSST-----------------------T
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhh-----------------------h
Confidence 45899999999999 999999999999999999999887 78888543221110 0
Q ss_pred ccCcceEEEEcccc-ccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhc
Q 040758 593 NRNSRGVFFLPQRP-YMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670 (788)
Q Consensus 593 ~~~r~~i~~v~Q~~-~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 670 (788)
...++.+++++|++ ..+. -++.|++.+........ ..........+.
T Consensus 86 ~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~---------------------------~~~~~~~~~~~~---- 134 (274)
T 2x8a_A 86 GESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR---------------------------ETGASVRVVNQL---- 134 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC------------------------------------CTTHHHHH----
T ss_pred hHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC---------------------------cchHHHHHHHHH----
Confidence 01123467777764 2222 24444443311100000 000000001111
Q ss_pred ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC------------CCCHHHHHHHHHHHHh
Q 040758 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTS------------ALDEANEAHLYEQIEA 736 (788)
Q Consensus 671 ~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTS------------aLD~~se~~i~~~L~~ 736 (788)
...|||||+||+.|++|+..+|++| |||+. --|.+.+..|++.+.+
T Consensus 135 ------------------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 135 ------------------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp ------------------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred ------------------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 1239999999999999999999985 99964 3477888888877653
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-10 Score=125.47 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=77.5
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+...+|.+++. .... ...+.+|
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~-------------------~~~~-~~~~~~g 218 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTT-------------------GVRL-IPFGKGS 218 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCC-------------------CEEE-EEETTTE
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCcee-------------------eEEE-EEcCCCc
Confidence 345679999999999999999999999 999999999983223333320 0000 0112589
Q ss_pred EEccccccC------CCCHHHHh--cCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhccc
Q 040758 601 FLPQRPYMV------LGSLRQQL--IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKL 672 (788)
Q Consensus 601 ~v~Q~~~lf------~~Ti~eNi--~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 672 (788)
+|+|+|.+. +.|+ ||+ .|+.. .+.. ++..++ .........+.++++.+++
T Consensus 219 ~v~d~pg~~~~~l~~~lt~-e~l~~~f~~~----~~~~--c~~~~~---------------~~~~e~~~~v~~~l~~~~L 276 (302)
T 2yv5_A 219 FVGDTPGFSKVEATMFVKP-REVRNYFREF----LRYQ--CKYPDC---------------THTNEPGCAVKEAVKNGEI 276 (302)
T ss_dssp EEESSCCCSSCCGGGTSCG-GGGGGGCGGG----HHHH--HHSTTC---------------CSSSCTTCHHHHHHHTTSS
T ss_pred EEEECcCcCcCcccccCCH-HHHHHHHHHH----HHcc--CCCCCC---------------CCCCCCCCHHHHHHHcCCC
Confidence 999999653 3477 777 34310 0000 111010 0011223467888888777
Q ss_pred cc-ccccCCCccccccCCCCCChhHHHHHHHHH
Q 040758 673 GY-ILPRLNSLDTTYEWSSVLSLGEQQRLAFAR 704 (788)
Q Consensus 673 ~~-~~~~~~g~~t~~e~g~~LSGGQrQRiaIAR 704 (788)
.. ..+ .+...|||.++++++|||
T Consensus 277 ~~~~~~---------~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 277 SCERYK---------SYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp CHHHHH---------HHHHHTTCCCTTHHHHSS
T ss_pred CHHHHH---------HHHHHHHHHHHHHHHHhc
Confidence 53 211 224459999999999997
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.4e-10 Score=121.20 Aligned_cols=56 Identities=20% Similarity=0.181 Sum_probs=47.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
+.++++++.|+. .. ++++|+ +|++++++|+||+||||++..|++++.+..|+|.+.
T Consensus 77 ~~~~~l~~~~~~--~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 77 TVYEALKEALGG--EA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp HHHHHHHHHTTS--SC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHCC--CC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 455677788853 22 788888 999999999999999999999999999999999984
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-10 Score=123.73 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=38.3
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 3456678999999999999999999999999999988899873
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=6.4e-10 Score=126.11 Aligned_cols=61 Identities=15% Similarity=0.134 Sum_probs=51.6
Q ss_pred EEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCc
Q 040758 500 DIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDRE 565 (788)
Q Consensus 500 ~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~ 565 (788)
.+.++++.. ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+..
T Consensus 8 ~l~~l~~~~----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 8 KFRSLTLIN----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp EEEEEEEEE----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred ceeEEEEec----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 345555432 3479999999999 999999999999999999999999999999999765543
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.87 E-value=7.3e-10 Score=118.93 Aligned_cols=39 Identities=23% Similarity=0.140 Sum_probs=31.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 456689999999999999999999999999999999998
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-12 Score=135.70 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=64.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCC-------CEEEEEcCCCCcHHHHHHHHhcCC----CCCCceEEEeeccCccc
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEK-------EHLLVMGPSGSGKTSLLRAMAGLW----SDGRGKITFYVKDREET 567 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~G-------e~iaIvG~sGsGKSTLl~lL~gl~----~p~~G~I~~~~~~~~~i 567 (788)
++.++++..|+ .+.+++++++.+++| +.++|+||||+|||||+++|++.. .+.+|.+..++. ++
T Consensus 19 lr~~~l~~~~g--~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~---~l 93 (334)
T 1in4_A 19 LRPKSLDEFIG--QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQG---DM 93 (334)
T ss_dssp TSCSSGGGCCS--CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHH---HH
T ss_pred cCCccHHHccC--cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHH---HH
Confidence 44556666674 456899999999887 899999999999999999999987 556666554211 11
Q ss_pred ccCCCccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHh
Q 040758 568 DAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617 (788)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi 617 (788)
... .. ...+..|++++|...++. ++.|++
T Consensus 94 -----------------~~~--~~-~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 94 -----------------AAI--LT-SLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp -----------------HHH--HH-HCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred -----------------HHH--HH-HccCCCEEEEcchhhcCH-HHHHHH
Confidence 000 00 012356999999887664 666665
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.8e-10 Score=132.56 Aligned_cols=158 Identities=18% Similarity=0.243 Sum_probs=99.2
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCC-ceEEEeeccCcccccCCCccchhhhcccccccchhc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR-GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTR 590 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~-G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 590 (788)
...+++++++.+++|+.++|+||||+|||||+++|++++++.. |.+.+++.. .
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~---~----------------------- 99 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP---E----------------------- 99 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT---T-----------------------
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc---c-----------------------
Confidence 4568999999999999999999999999999999999999988 777764322 1
Q ss_pred ccccCcceEEEEcccc----------------------ccC-CCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhh
Q 040758 591 SMNRNSRGVFFLPQRP----------------------YMV-LGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQK 647 (788)
Q Consensus 591 ~~~~~r~~i~~v~Q~~----------------------~lf-~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~ 647 (788)
......++++|+.. ..+ ..++.+|+..++...... +++.
T Consensus 100 --~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~------------~~v~---- 161 (604)
T 3k1j_A 100 --DENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKA------------PFID---- 161 (604)
T ss_dssp --CTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSC------------CEEE----
T ss_pred --cccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCC------------CEEE----
Confidence 01223477777654 111 113333333221110000 0000
Q ss_pred hhhhccCCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040758 648 LENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANE 727 (788)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se 727 (788)
. ...+ ..+.. +.++....+...+|+|++|++..++....++.+|+|||... |++...
T Consensus 162 -----~--~~~~---~~~L~------------G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q 218 (604)
T 3k1j_A 162 -----A--TGAH---AGALL------------GDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQ 218 (604)
T ss_dssp -----C--TTCC---HHHHH------------CEECCCCC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHH
T ss_pred -----c--CCCC---HHhcC------------ceEEechhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHH
Confidence 0 0000 11111 01111112234599999999999999999999999999988 899999
Q ss_pred HHHHHHHHh
Q 040758 728 AHLYEQIEA 736 (788)
Q Consensus 728 ~~i~~~L~~ 736 (788)
..+.+.|++
T Consensus 219 ~~Ll~~Le~ 227 (604)
T 3k1j_A 219 QSLLTAMQE 227 (604)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998874
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-11 Score=129.86 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=47.9
Q ss_pred CC--CEEEEecCCCCCCHHHHHHHHHHHHh----cCCEEEEEecCcc-hhhcCCEEE-EEccC-CCCCCCCCeE
Q 040758 709 KP--QIVLLDESTSALDEANEAHLYEQIEA----AGITYISVGHRRT-LYDFHKRVL-RISTV-DQNSSQSNWK 773 (788)
Q Consensus 709 ~p--~iLiLDEpTSaLD~~se~~i~~~L~~----~g~TvI~IaHr~~-~~~~~D~Il-vl~~g-~~~~~~~~~~ 773 (788)
+| +++++|||++.+|++......+.+.+ .|.|++ +|... ....||++. .|++| +..-. +.|.
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~-~~~~ 209 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK-GDWS 209 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG-SCCC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec-CCCC
Confidence 89 99999999999999998887777654 366653 99864 457899998 89999 65433 5553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.2e-09 Score=109.36 Aligned_cols=72 Identities=22% Similarity=0.323 Sum_probs=47.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceE
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGV 599 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i 599 (788)
|+++++|++++|+||||||||||+++|+|+++ .+.+++ .+.. ..+....+..+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~---~~~~--------------------~~~~~~~~~~~ 53 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISI---SHTT--------------------RPKRPGDQEGV 53 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECC---CEEC--------------------SCCCTTCCBTT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEec---eecc--------------------CCCchhHhcCc
Confidence 67889999999999999999999999999974 466632 2221 00111224568
Q ss_pred EEEccccccCCC-CHHHHhc
Q 040758 600 FFLPQRPYMVLG-SLRQQLI 618 (788)
Q Consensus 600 ~~v~Q~~~lf~~-Ti~eNi~ 618 (788)
+|++|++.+|.. +..+|+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 54 DYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp TBEECCHHHHHHHHHHTCEE
T ss_pred eEEeccHHHHHHHHhcCcEE
Confidence 999999987754 5555543
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.71 E-value=8.6e-08 Score=98.32 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=43.9
Q ss_pred HHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHHH----HHHhcCCEEEEEecCcc---------hhhcCCEEEEE
Q 040758 698 QRLAFARLLL--SKPQIVLLDESTSAL--DEANEAHLYE----QIEAAGITYISVGHRRT---------LYDFHKRVLRI 760 (788)
Q Consensus 698 QRiaIARALl--~~p~iLiLDEpTSaL--D~~se~~i~~----~L~~~g~TvI~IaHr~~---------~~~~~D~Ilvl 760 (788)
+....++.++ .+|+++++||+|+.+ |+........ .+++.|.|+|+++|... ....||.++.|
T Consensus 115 ~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L 194 (247)
T 2dr3_A 115 EFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRL 194 (247)
T ss_dssp HHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEE
Confidence 3344444444 579999999999988 5432233322 33457999999999753 24678999999
Q ss_pred cc
Q 040758 761 ST 762 (788)
Q Consensus 761 ~~ 762 (788)
+.
T Consensus 195 ~~ 196 (247)
T 2dr3_A 195 DL 196 (247)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-08 Score=106.44 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=30.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KIT 558 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~ 558 (788)
++|++++++|||||||||+++.|++.+.+++| +|.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~ 138 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIA 138 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 47999999999999999999999999988777 443
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.65 E-value=8.4e-10 Score=113.56 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=42.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.|+++|+...|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.+
T Consensus 9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 488888876552 1 566667 8999999999999999999999999999999996544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=4.9e-09 Score=119.71 Aligned_cols=46 Identities=28% Similarity=0.411 Sum_probs=38.5
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEEEeecc
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAG--LWSDGRGKITFYVKD 563 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p~~G~I~~~~~~ 563 (788)
.+++++.++.+++|.|+|||||||+++.|.. ++.++.|++.+.+.|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liD 206 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMID 206 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEEC
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEEC
Confidence 4678888999999999999999999999876 677777888775443
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.60 E-value=7.8e-09 Score=111.00 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=42.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEE
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF 600 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~ 600 (788)
+++.+|++++|+||||||||||+|+|+|+.+|..|+|.+...+|.+.+. .....+..+|
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~---------------------~~~~~~~~~g 226 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTR---------------------HVELIHTSGG 226 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CC---------------------CCCEEEETTE
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCccccc---------------------HHHHhhcCCE
Confidence 5567899999999999999999999999999999999873222333320 0001111279
Q ss_pred EEccccccCC-----CCHHHHhc
Q 040758 601 FLPQRPYMVL-----GSLRQQLI 618 (788)
Q Consensus 601 ~v~Q~~~lf~-----~Ti~eNi~ 618 (788)
+++|.|.+.. .|+ ||+.
T Consensus 227 ~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 227 LVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp EEESSCSCSSCCCTTCCH-HHHG
T ss_pred EEecCCCccccccccCCH-HHHH
Confidence 9999997754 467 8874
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.60 E-value=9.2e-11 Score=124.07 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=47.8
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
-+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 50 ~~l~~l~~~~~--~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 50 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHH--CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHH--CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 34567776674 346899999999999 99999999999999999999876 78888854
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-09 Score=104.52 Aligned_cols=36 Identities=28% Similarity=0.337 Sum_probs=32.3
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...+||+++++|+++++| |||+|..+..++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999888754
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.5e-08 Score=104.01 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=23.5
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh-cCCCC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA-GLWSD 552 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~-gl~~p 552 (788)
...+++||++++|++++|+||||||||||+++|+ |++++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 4579999999999999999999999999999999 99865
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-10 Score=120.05 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=47.9
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.+.+++
T Consensus 26 ~~l~~l~~~~~--~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHH--CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHH--CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 45667777674 346899999999999 99999999999999999999875 78888854
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=104.01 Aligned_cols=38 Identities=21% Similarity=0.279 Sum_probs=30.0
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
-+++|+++.|.||+|||||||+..++.......|.+.+
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vly 94 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAF 94 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 57899999999999999999988777554444455544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-09 Score=109.54 Aligned_cols=80 Identities=15% Similarity=0.091 Sum_probs=54.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceEE--------EeeccCcccccCCCccchhhhcccc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKIT--------FYVKDREETDAHTSDVDSLEVNSQN 583 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I~--------~~~~~~~~i~~~~~~~~~~~~~~~~ 583 (788)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.|. .+|. ++.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~---~~~--------------- 77 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQV---DIS--------------- 77 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTC---CSS---------------
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCC---Ccc---------------
Confidence 444444 789999999999999999999999 99999999997 5322 221
Q ss_pred cccchhcccccCcceEEEEccc------cccCCCCHHHHhcC
Q 040758 584 MNGELTRSMNRNSRGVFFLPQR------PYMVLGSLRQQLIY 619 (788)
Q Consensus 584 ~~~~~~~~~~~~r~~i~~v~Q~------~~lf~~Ti~eNi~~ 619 (788)
. ......+++.+++++|+ .+++..++.+|+..
T Consensus 78 --~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~i~~ 115 (252)
T 4e22_A 78 --T--EEALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRT 115 (252)
T ss_dssp --S--STTHHHHHHTCCEEEEEETTEEEEEETTEECTTGGGS
T ss_pred --c--HHHHHHHHHcCCEEEecCCCCceEEECCeehhHHHHH
Confidence 0 01112345668888854 45666788888753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.6e-08 Score=105.50 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=36.0
Q ss_pred CcEEEeee-EEEcCCCCccceeeeeEEEeC---CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 497 KLLDIEDL-TLKTPTSKATLVRDLSLVINE---KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 497 ~~I~~~nv-sf~y~~~~~~vL~~isl~i~~---Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++++|+ +|+|+ ++.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~-~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFD-EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEec-CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 36999999 99993 356799999999999 9999999999999999999999854
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-07 Score=104.27 Aligned_cols=48 Identities=13% Similarity=0.160 Sum_probs=39.9
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEEE
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~~ 559 (788)
+-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~ 237 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAI 237 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEE
Confidence 34578888888999999999999999999999999987665445 5655
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=7.7e-08 Score=114.04 Aligned_cols=74 Identities=18% Similarity=0.139 Sum_probs=48.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcc
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSR 597 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 597 (788)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| . ++..+. + ......++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~---~g~~~~--------------d------~~~~e~~~ 58 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-E---EGTTTT--------------D------YTPEAKLH 58 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-G---GTCCSS--------------C------CSHHHHHT
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-c---CCcccc--------------c------CCHHHHhc
Confidence 467889999999999999999999999987665 67877 3 232221 0 00112235
Q ss_pred eEEEEccccccCCCCHHHHh
Q 040758 598 GVFFLPQRPYMVLGSLRQQL 617 (788)
Q Consensus 598 ~i~~v~Q~~~lf~~Ti~eNi 617 (788)
.+++.+|.+.++..++..||
T Consensus 59 giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 59 RTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp TSCCSCEEEEEEETTEEEEE
T ss_pred CCeEEecceEEeeCCEEEEE
Confidence 57888888777665555554
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.3e-08 Score=100.47 Aligned_cols=30 Identities=20% Similarity=0.439 Sum_probs=26.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
...+|+.++|+||||||||||++.|++.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 334899999999999999999999999886
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-07 Score=93.02 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=29.8
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 700 LAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 700 iaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
...||+++++|+++++| |||+|.....++++.|.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 35689999999999999 99999999988887764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=8.1e-09 Score=105.09 Aligned_cols=34 Identities=35% Similarity=0.428 Sum_probs=29.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC---CCCCceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW---SDGRGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~---~p~~G~I~~ 559 (788)
+.+++|+||+||||||+.++|++.+ .++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5789999999999999999999876 677777764
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.23 E-value=6.7e-07 Score=89.63 Aligned_cols=70 Identities=14% Similarity=0.102 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEecCcch---hhcCCEEEEEccC
Q 040758 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-AGITYISVGHRRTL---YDFHKRVLRISTV 763 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaHr~~~---~~~~D~Ilvl~~g 763 (788)
.+.|+.+|..+++.++.+|+.+-.+ ++.++|...+.+.+.+.. .+.++|+-+|.+.. .+.||.+++++-.
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~ 133 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVS 133 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEECC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEECC
Confidence 4688999999999999888754333 335666666666666654 46688888887532 4679999999753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.3e-06 Score=97.23 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHHH-------hcCCEEEEEecCcchh-----
Q 040758 694 LGEQQRLAFARLLLSKPQIVLLDEST----------SALDEANEAHLYEQIE-------AAGITYISVGHRRTLY----- 751 (788)
Q Consensus 694 GGQrQRiaIARALl~~p~iLiLDEpT----------SaLD~~se~~i~~~L~-------~~g~TvI~IaHr~~~~----- 751 (788)
|++++|-.+++|....|.+|++||+. ++.|.+.+..+.+.|. ..+..+|.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 67889999999999999999999993 4667766655555443 2467899999997532
Q ss_pred h--cCCEEEEEc
Q 040758 752 D--FHKRVLRIS 761 (788)
Q Consensus 752 ~--~~D~Ilvl~ 761 (788)
+ ..|+.+.+.
T Consensus 173 R~gRFd~~i~i~ 184 (476)
T 2ce7_A 173 RPGRFDKKIVVD 184 (476)
T ss_dssp STTSSCEEEECC
T ss_pred ccCcceeEeecC
Confidence 2 356666654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=85.54 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=36.7
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
+++++++.+| +++|+||||||||||+++|.++..+..|...
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~ 58 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAM 58 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGG
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 7889999999 9999999999999999999998888777543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.3e-07 Score=94.70 Aligned_cols=49 Identities=27% Similarity=0.302 Sum_probs=42.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE--EEee
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI--TFYV 561 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I--~~~~ 561 (788)
.....+..++..++|++++|+|||||||||+.++|++.+. ..|.+ ++++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 3456788888899999999999999999999999999988 77988 7753
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-06 Score=94.51 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=43.3
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+++++||++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3478999999999999999999999999999999999999999985443
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.14 E-value=4.7e-06 Score=91.23 Aligned_cols=59 Identities=19% Similarity=0.238 Sum_probs=48.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHh--cCCEEEEEe--cCcc
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLD-ESTSALDEANEAHLYEQIEA--AGITYISVG--HRRT 749 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLD-EpTSaLD~~se~~i~~~L~~--~g~TvI~Ia--Hr~~ 749 (788)
..+|+||+|++. +.+...++-++++| ++++++|.+....+.+.+.+ .++.+|++. ||+.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 358999999887 66666788899999 99999999988888777765 388899998 7753
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.5e-07 Score=88.10 Aligned_cols=35 Identities=20% Similarity=0.215 Sum_probs=29.9
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
++|++|++++|+|||||||||++++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977655
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.13 E-value=3.5e-07 Score=100.05 Aligned_cols=56 Identities=25% Similarity=0.318 Sum_probs=51.0
Q ss_pred CCCCcEEEeeeEEEcCCCCcccee--------------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 494 KSQKLLDIEDLTLKTPTSKATLVR--------------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~~~~vL~--------------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...+.+.|+||++.||. ++..|+ |+++.|.+||+++|+||+|+|||||+++|+++.
T Consensus 129 ~~~~ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 129 NARNKILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHTTSCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCC-CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34678999999999996 667888 999999999999999999999999999999975
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.9e-06 Score=90.48 Aligned_cols=43 Identities=28% Similarity=0.477 Sum_probs=34.4
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc--CCCCCCceEE
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG--LWSDGRGKIT 558 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g--l~~p~~G~I~ 558 (788)
..+|++++++++ .++|||++|||||||++.|.| +.++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358999999999 899999999999999999999 7788877664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.10 E-value=8.6e-07 Score=97.52 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=34.4
Q ss_pred CCCCCChhHHHHHHHH----HHH-ccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 688 WSSVLSLGEQQRLAFA----RLL-LSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 688 ~g~~LSGGQrQRiaIA----RAL-l~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+|+|++||++++ +++ ..+|++ +||||+|.+....+.+.|.+
T Consensus 301 K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~ 350 (364)
T 2qtf_A 301 KIDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ 350 (364)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence 3445788899998887 666 445555 89999999999888887753
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-06 Score=87.58 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=24.8
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
....++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999765
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=4.5e-06 Score=83.64 Aligned_cols=32 Identities=19% Similarity=0.144 Sum_probs=28.2
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
-=++++|++++|+|++||||||+.++|++.++
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34567899999999999999999999999764
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-06 Score=85.43 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC-CCceEEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD-GRGKITF 559 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p-~~G~I~~ 559 (788)
.+|++++|+||||||||||+++|++++++ ..|.|..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 36999999999999999999999999874 5566654
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-06 Score=85.58 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=30.7
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
..+-.++-++|++++|+||||||||||+++|++.+ |.+.+++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~ 60 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEA 60 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEG
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcc
Confidence 33334677899999999999999999999999987 8899854
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.7e-06 Score=89.92 Aligned_cols=38 Identities=21% Similarity=0.174 Sum_probs=34.2
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=+++|+++.|.||+|||||||+..+++...+..|.+.+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~Vly 94 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAF 94 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 48899999999999999999999999988887887755
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.2e-05 Score=85.22 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=30.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 457766667999999999999999999999888754
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.6e-07 Score=105.49 Aligned_cols=57 Identities=26% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+++++...|. ...+++++++.+++| +.|+||+|+|||||+++|++... .|.+.+++
T Consensus 41 ~~l~~lv~~l~--~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 41 EELKEIVEFLK--NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHH--CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHHhh--chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 34555555553 345789999999999 99999999999999999999875 67888854
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.81 E-value=5.2e-06 Score=83.16 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=36.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.++|++++|+|+|||||||+++.|++++++..|.|.+.+.|
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 56799999999999999999999999999989999875443
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.9e-07 Score=95.21 Aligned_cols=59 Identities=15% Similarity=0.218 Sum_probs=46.7
Q ss_pred eEEEcCCCCccceeeeeEEEeCCC------EEEEEcCCCCcHHHHHHHHhcCCC--CCCceEEEeeccC
Q 040758 504 LTLKTPTSKATLVRDLSLVINEKE------HLLVMGPSGSGKTSLLRAMAGLWS--DGRGKITFYVKDR 564 (788)
Q Consensus 504 vsf~y~~~~~~vL~~isl~i~~Ge------~iaIvG~sGsGKSTLl~lL~gl~~--p~~G~I~~~~~~~ 564 (788)
+++.|. +...|++++..+.+++ ++||+||||||||||+++|.+++. |++|.+.+-+.|+
T Consensus 66 l~~~~~--~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~ 132 (321)
T 3tqc_A 66 LSFYVT--ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDG 132 (321)
T ss_dssp HHHHHH--HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGG
T ss_pred HHHhhc--chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecc
Confidence 344453 4568888998888887 999999999999999999999987 5778877644443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.2e-05 Score=96.77 Aligned_cols=66 Identities=18% Similarity=0.112 Sum_probs=50.3
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHh---cCCEEEE-EecCcch-hhcCC
Q 040758 690 SVLSLGEQQRLAFARLLLSKPQIVLLDESTS-ALDEANEAHLYEQIEA---AGITYIS-VGHRRTL-YDFHK 755 (788)
Q Consensus 690 ~~LSGGQrQRiaIARALl~~p~iLiLDEpTS-aLD~~se~~i~~~L~~---~g~TvI~-IaHr~~~-~~~~D 755 (788)
..+|+|+.+|..++++++.+++++|+|||+. +||.+....+.+.+.+ ..+++++ .||+.+. .++.+
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~ 260 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTT
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhc
Confidence 4589999999999999999999999999997 9998877666665543 3456666 4887543 34444
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=6.8e-06 Score=84.13 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=34.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
.+.++|++++|+|+|||||||++++|+++ .|+|.+.+.+
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~ 53 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEP 53 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence 34578999999999999999999999998 7889986544
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=81.00 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=27.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
++|+.++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999999987
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.76 E-value=2.8e-05 Score=86.98 Aligned_cols=55 Identities=20% Similarity=0.217 Sum_probs=45.6
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.++++..|+. . . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+
T Consensus 79 ~~~L~~~~~~-~-~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 79 YEALKEALGG-E-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp HHHHHHHTTS-S-C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHHHHHhCC-C-c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 3456666743 2 2 678888 8999999999999999999999999999999999853
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.69 E-value=6e-06 Score=91.05 Aligned_cols=43 Identities=33% Similarity=0.390 Sum_probs=39.0
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++++|+++++|+.++|+||||||||||+++|+|. .+|++..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 589999999999999999999999999999999985 4677753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.6e-05 Score=77.30 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=30.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
.+|++++|+|+|||||||+.++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 468999999999999999999999875 7888853
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.63 E-value=3.7e-05 Score=83.68 Aligned_cols=28 Identities=21% Similarity=0.168 Sum_probs=25.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+++.|.||+|||||||+..++.-
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988874
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0002 Score=73.34 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
+++|+|++|+|||||++.|+|-..+.+|..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~ 60 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTA 60 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence 589999999999999999999776665543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00013 Score=81.63 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.+++++|++||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999999888888876
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00026 Score=77.22 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=32.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh------cCCEEEEEecCcch
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEA------AGITYISVGHRRTL 750 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~------~g~TvI~IaHr~~~ 750 (788)
.+|.+|+|||+... |......+.+.+.+ .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45889999999876 88888777777642 37788999998753
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.58 E-value=1.1e-05 Score=93.09 Aligned_cols=42 Identities=26% Similarity=0.281 Sum_probs=36.9
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc-eEE-Eee
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG-KIT-FYV 561 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G-~I~-~~~ 561 (788)
...+++|++++|+|+||||||||+++|++.+.|++| ++. +||
T Consensus 363 ~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 363 PPRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp CCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 346889999999999999999999999999999987 785 643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.57 E-value=2.7e-05 Score=87.40 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=38.8
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
.|+++|+ .+|. +. . ++++.+|++++|+||||||||||+++|+++..+.++.
T Consensus 6 ~l~~~~~-~~~~--~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~~ 56 (430)
T 1w1w_A 6 GLELSNF-KSYR--GV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSNH 56 (430)
T ss_dssp EEEEESC-SSCC--SE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC----
T ss_pred EEEEeCE-EEEC--Cc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccccc
Confidence 4788888 6774 21 2 2557789999999999999999999999998887643
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0001 Score=79.28 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=31.3
Q ss_pred CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 512 KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-+-|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 54 G~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 54 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred ChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 3456777776699999999999999999999887774
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00029 Score=75.87 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+.+.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5899999999999999999999888764
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0003 Score=74.22 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=44.8
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH----------HHHHHHHHHh-------cCCEEEEEecCcc-----h
Q 040758 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN----------EAHLYEQIEA-------AGITYISVGHRRT-----L 750 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~s----------e~~i~~~L~~-------~g~TvI~IaHr~~-----~ 750 (788)
++++++|..++++...+|.+|++||+.+-++... ...+...+.. .+..+|.+|++.+ +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 4677788888888888999999999988765432 1233344432 1345677788753 2
Q ss_pred hhcCCEEEEEc
Q 040758 751 YDFHKRVLRIS 761 (788)
Q Consensus 751 ~~~~D~Ilvl~ 761 (788)
.+.+++++.+.
T Consensus 177 ~~R~~~~i~~~ 187 (297)
T 3b9p_A 177 LRRFTKRVYVS 187 (297)
T ss_dssp HHHCCEEEECC
T ss_pred HhhCCeEEEeC
Confidence 34567766654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.40 E-value=9.3e-05 Score=80.36 Aligned_cols=29 Identities=17% Similarity=0.471 Sum_probs=25.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+++..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.40 E-value=2.2e-05 Score=85.41 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=45.1
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeec
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVK 562 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~ 562 (788)
+.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~ 92 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAV 92 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 45889999999999999999999999999999999999888888887433
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.40 E-value=5.5e-05 Score=73.05 Aligned_cols=32 Identities=28% Similarity=0.522 Sum_probs=27.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.|++++|+|||||||||+.++|++.+.+ +.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id 34 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYD 34 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEe
Confidence 4789999999999999999999998754 5554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00021 Score=80.50 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCCCCCH-HHHHHHHHHHH---hcCCEEEEEecCc
Q 040758 708 SKPQIVLLDESTSALDE-ANEAHLYEQIE---AAGITYISVGHRR 748 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~-~se~~i~~~L~---~~g~TvI~IaHr~ 748 (788)
.+|++|++||+..-.+. .++..+...+. +.|+++|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 55666666654 4688999999983
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=7.9e-05 Score=72.69 Aligned_cols=36 Identities=25% Similarity=0.252 Sum_probs=30.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEEe
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG--KITFY 560 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G--~I~~~ 560 (788)
++|+.++|+|++||||||+.++|++.+.+ .| .|.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 47999999999999999999999998766 56 56554
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00012 Score=74.97 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=32.4
Q ss_pred eeeeeEEEe---CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 516 VRDLSLVIN---EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 516 L~~isl~i~---~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
|.+.|+++. +|..++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999888 777765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0001 Score=80.44 Aligned_cols=40 Identities=18% Similarity=0.361 Sum_probs=35.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeecc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKD 563 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~ 563 (788)
+++.+++|+|++|||||||++.|+|.+.+.+|+|.+.+.|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 4678999999999999999999999999999999886544
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=8.9e-05 Score=73.55 Aligned_cols=42 Identities=21% Similarity=0.312 Sum_probs=31.8
Q ss_pred EEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 505 TLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 505 sf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++||+ -..+++++|++.+++ +++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~-~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG-FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH-HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456764 456899999998887 578999999999999999987
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0002 Score=68.28 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=24.4
Q ss_pred eeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 517 RDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 517 ~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
++.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445566655 88999999999999999987
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00074 Score=71.44 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=28.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
...+.|+||+|+||||+++.|++...+..|.+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 467999999999999999999998877766554
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00055 Score=77.30 Aligned_cols=59 Identities=5% Similarity=-0.065 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh
Q 040758 693 SLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY 751 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~ 751 (788)
++.|.+-...+...+.+++++|+......-.......+.+.+++.++.+|++.+..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 34588888889999999998888766554334445677788888899999998876643
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=7.4e-05 Score=75.13 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc--eEEEe
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG--KITFY 560 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G--~I~~~ 560 (788)
+.+++|..++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 44678999999999999999999999999988888 78774
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.003 Score=67.09 Aligned_cols=30 Identities=33% Similarity=0.531 Sum_probs=27.0
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.++++..+.|.||+|+|||||++.+++..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999865
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00013 Score=84.36 Aligned_cols=57 Identities=25% Similarity=0.323 Sum_probs=47.3
Q ss_pred EeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 501 ~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
++++...|. +..+++++++++ +|+.++|+||||+|||||+++|++...+..|+|.++
T Consensus 86 ~~~vk~~i~--~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~ 142 (543)
T 3m6a_A 86 LEKVKERIL--EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLG 142 (543)
T ss_dssp CHHHHHHHH--HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCC
T ss_pred HHHHHHHHH--HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEec
Confidence 455555553 345778888888 899999999999999999999999999888888764
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00092 Score=71.56 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
.+..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999986543
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00017 Score=76.85 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=39.5
Q ss_pred ee-eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 517 RD-LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 517 ~~-isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 56 788876 999999999999999999999999999889998843
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00015 Score=79.47 Aligned_cols=54 Identities=17% Similarity=0.282 Sum_probs=37.2
Q ss_pred CCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 496 QKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 496 ~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.+.+.++|++..|. ++.++++++|+| +|+|++|+|||||++.|.+...+..|.+
T Consensus 15 ~~~v~~~~l~~~~~--~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 15 PGYVGFANLPNQVH--RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ------CCHHHHHH--THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CceEEeccchHHhC--CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 45789999998885 456889999987 9999999999999999998766555544
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00045 Score=67.82 Aligned_cols=32 Identities=28% Similarity=0.384 Sum_probs=26.6
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++|++.++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888899999999999999999999999875
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00038 Score=69.48 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=26.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+..+|..++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998764
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0016 Score=66.38 Aligned_cols=51 Identities=14% Similarity=0.351 Sum_probs=37.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc-----------chhhcCCEEEEEc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR-----------TLYDFHKRVLRIS 761 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~-----------~~~~~~D~Ilvl~ 761 (788)
+|+++++||+-- |+.+.-+.+ ..|.+.|.+||++.|+. .++..||+|..|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 776543333 44555699999999942 2456899998864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00029 Score=80.96 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=30.9
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+++++|++.+| ..+|+|+||||||||+.+|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 578899999999 9999999999999999999554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00073 Score=66.31 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=20.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.+++++++..++. +++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998887 789999999999999999997
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00041 Score=67.94 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=32.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.++|..+.|+|++||||||+.+.|++.+.+..|.+.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~ 46 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEV 46 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 3478999999999999999999999988877777643
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00068 Score=65.51 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|.+++|+|++|+|||||++.|++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0037 Score=68.29 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=28.9
Q ss_pred ccceeeeeEE---EeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 513 ATLVRDLSLV---INEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 513 ~~vL~~isl~---i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+-|+.+ +. +++|+.+.|.|++|+|||||...++.-
T Consensus 48 ~~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 48 SLSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CHHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456555 33 889999999999999999998877753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0022 Score=67.05 Aligned_cols=28 Identities=39% Similarity=0.589 Sum_probs=24.5
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++++..+.|.||+|+|||||++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998754
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0043 Score=69.71 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=30.8
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666568999999999999999999988877643
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00096 Score=66.87 Aligned_cols=29 Identities=41% Similarity=0.598 Sum_probs=23.6
Q ss_pred eeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 518 ~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+.++++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566654 88999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00066 Score=67.83 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=31.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
.+|.+|++||+-. +|......+.+.+.+ .+..+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4688999999876 788888888888876 3567788887754
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.001 Score=73.35 Aligned_cols=55 Identities=9% Similarity=0.088 Sum_probs=40.1
Q ss_pred EEcCCCCccceeeeeEEE---eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEee
Q 040758 506 LKTPTSKATLVRDLSLVI---NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYV 561 (788)
Q Consensus 506 f~y~~~~~~vL~~isl~i---~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~ 561 (788)
+.+...+.+++-|+ +.. ..+..++|+|+|||||||+++.|+..+.+..+.|.+-+
T Consensus 13 ~G~~~~g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 13 LGKDRDGGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp EEECTTSCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEeCCCCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 34332344566555 222 26778999999999999999999988778888888753
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=64.15 Aligned_cols=26 Identities=35% Similarity=0.617 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
+++|+|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 58999999999999999999975443
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=65.79 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=73.12 Aligned_cols=39 Identities=8% Similarity=0.219 Sum_probs=32.5
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcC-----------CCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGL-----------WSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl-----------~~p~~G~I~~~ 560 (788)
.+..|.+++|||++|+|||||++.|+|. .+|..|.+.++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~ 67 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVP 67 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEEC
Confidence 4567889999999999999999999998 67888888764
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=73.39 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=29.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC------------CCCceEEEee
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS------------DGRGKITFYV 561 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~------------p~~G~I~~~~ 561 (788)
-+++|+|+||+|||||++.|+|... +.+|.+.++|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g 227 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG 227 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC
Confidence 3799999999999999999999853 6678888743
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0009 Score=73.59 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=45.7
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEE
Q 040758 699 RLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRI 760 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl 760 (788)
+.+|+++|..+|+++++|||| |+++...+.+.. ..|.+++.++|..+....+||++.|
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcchHHHHHHHHHHh
Confidence 569999999999999999999 776654444333 3589999999998777777776554
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00095 Score=66.24 Aligned_cols=31 Identities=39% Similarity=0.432 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++|+|++||||||+.+.|++.+ |...++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEe
Confidence 4689999999999999999998865 455664
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00021 Score=77.28 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=41.4
Q ss_pred CccceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 512 KATLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 512 ~~~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
...+++.++..++.|+. +.+.||+|+||||+++++++...+..+.+.+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 34688999999999998 9999999999999999999988777665444
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.00058 Score=74.24 Aligned_cols=37 Identities=19% Similarity=0.444 Sum_probs=33.7
Q ss_pred cceeeeeEEEeCCCE--EEEEcCCCCcHHHHHHHHhcCC
Q 040758 514 TLVRDLSLVINEKEH--LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~--iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478899999999999 9999999999999999998753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0026 Score=60.59 Aligned_cols=24 Identities=21% Similarity=0.483 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999998643
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0012 Score=68.40 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=30.8
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++..+.|+|++||||||+.+.|++.+. .|.+.++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~ 64 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIID 64 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEEC
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEe
Confidence 566788999999999999999999998765 3556664
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0019 Score=62.84 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.00092 Score=68.67 Aligned_cols=32 Identities=34% Similarity=0.520 Sum_probs=25.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHh---cCCCCCCceE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMA---GLWSDGRGKI 557 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~---gl~~p~~G~I 557 (788)
.-+++|+||+||||||+.+.|+ |+...+.|.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 4589999999999999999999 5444444544
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0021 Score=62.16 Aligned_cols=22 Identities=23% Similarity=0.596 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+++-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.11 E-value=3.7e-06 Score=88.15 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=54.4
Q ss_pred Ccccc-ccCCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHHHH---------HHHHHHHHh--cCCEEEEEec
Q 040758 681 SLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQI--VLLDESTSALDEANE---------AHLYEQIEA--AGITYISVGH 746 (788)
Q Consensus 681 g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~i--LiLDEpTSaLD~~se---------~~i~~~L~~--~g~TvI~IaH 746 (788)
++++. ++++..+|+| ||+++||+++.+|++ +|+||+|++||...+ ..+++.++. +|+|.+.++|
T Consensus 161 ~l~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~ 238 (261)
T 2eyu_A 161 ILQGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAM 238 (261)
T ss_dssp HEEEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHH
T ss_pred HhhEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHH
Confidence 45554 5666678999 999999999999999 999999999998743 345666654 7999999999
Q ss_pred Ccc
Q 040758 747 RRT 749 (788)
Q Consensus 747 r~~ 749 (788)
|.+
T Consensus 239 r~~ 241 (261)
T 2eyu_A 239 EAS 241 (261)
T ss_dssp HHC
T ss_pred HHh
Confidence 975
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.01 Score=58.37 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcc-----------hhhcCCEEEEEccC
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT-----------LYDFHKRVLRISTV 763 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~-----------~~~~~D~Ilvl~~g 763 (788)
+++++++||+-- +|++....+....+ .|..+|+.+++.+ ++..||.+..|+.-
T Consensus 76 ~~dvviIDE~Q~-~~~~~~~~l~~l~~-~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPSLFEVVKDLLD-RGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp TEEEEEECCGGG-SCTTHHHHHHHHHH-TTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCCEEEEECccc-CCHHHHHHHHHHHH-CCCCEEEEeeccccccCCccchHHHHHHhhheEEeeee
Confidence 578999999864 66654444433333 4899999999544 45679999888643
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0018 Score=69.02 Aligned_cols=25 Identities=24% Similarity=0.437 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.+++|+|++|+|||||++.|.|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3448999999999999999999985
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0031 Score=60.85 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
|..+.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999998654
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0027 Score=62.46 Aligned_cols=22 Identities=18% Similarity=0.510 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0017 Score=63.53 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCC---CceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDG---RGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~---~G~I~~ 559 (788)
-..++|+|+||||||||++.|.+.+.+. -|.|..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3579999999999999999999876543 255555
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0031 Score=64.28 Aligned_cols=26 Identities=23% Similarity=0.440 Sum_probs=23.3
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-++|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999999999986
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0071 Score=65.41 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567789999999999999999998754
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0034 Score=59.93 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0024 Score=65.78 Aligned_cols=35 Identities=37% Similarity=0.538 Sum_probs=25.5
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 455666666655 99999999999999999998764
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0041 Score=61.20 Aligned_cols=30 Identities=20% Similarity=0.254 Sum_probs=25.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
..+++|+|++||||||+.++|+.. |-..+|
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id 37 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLD 37 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEc
Confidence 357999999999999999999986 666664
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0043 Score=60.31 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..+.|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998743
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0011 Score=66.04 Aligned_cols=31 Identities=19% Similarity=0.489 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
+++|+|++||||||+++.|.+.+.+....+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~ 32 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVA 32 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 6899999999999999999988765444443
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0049 Score=59.86 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998643
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0046 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.6
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++..+.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998643
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0097 Score=63.66 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.2
Q ss_pred EeCCCEEEEEcCCCCcHHHH-HHHHhcC
Q 040758 523 INEKEHLLVMGPSGSGKTSL-LRAMAGL 549 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTL-l~lL~gl 549 (788)
+++| ++.|.||+|+||||| +++++..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 6789 899999999999999 4444443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0098 Score=65.09 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=26.8
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++..+++.+| ..+|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 47778888774 78899999999999999986
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=60.22 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999999876
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0054 Score=58.26 Aligned_cols=20 Identities=30% Similarity=0.642 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCcHHHHHHHH
Q 040758 527 EHLLVMGPSGSGKTSLLRAM 546 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL 546 (788)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.052 Score=60.74 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.+++++|++|+||||++.-|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999876654344543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0052 Score=60.82 Aligned_cols=22 Identities=36% Similarity=0.851 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+||||||||||++.|..-+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887544
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0054 Score=61.44 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
.+-+++|+|++||||||+.+.|+.+ |...++
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id 33 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVID 33 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEE
Confidence 3568999999999999999999983 555553
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.022 Score=61.08 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=25.2
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
--+++|..+.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999998875
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0086 Score=65.42 Aligned_cols=35 Identities=17% Similarity=0.245 Sum_probs=29.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc-----------CCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG-----------LWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g-----------l~~p~~G~I~~~ 560 (788)
|-+++|||.+|+|||||++.|++ -.+|..|.+.++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~ 47 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMP 47 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecC
Confidence 46799999999999999999998 456778887764
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0064 Score=58.92 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++..+.|+|++||||||+.+.|+..
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999844
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.015 Score=65.38 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.0
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-|+.+.--+++|+.+.|.|++|+|||||.--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555543589999999999999999999776664
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0073 Score=58.97 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998644
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0077 Score=59.70 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++|..++|.|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999864
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.023 Score=62.19 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+.+.|.||+|+|||||..-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 478999999999999999999876654
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0083 Score=59.52 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|..++|+|+.||||||+.+.|+..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999999999999853
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.034 Score=55.14 Aligned_cols=51 Identities=20% Similarity=0.303 Sum_probs=37.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCc-----------chhhcCCEEEEEc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRR-----------TLYDFHKRVLRIS 761 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~-----------~~~~~~D~Ilvl~ 761 (788)
+.+++++||+-- +|++... ..+.+...|++||+..+|. .++..||.|..|.
T Consensus 81 ~~dvViIDEaqf-l~~~~v~-~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEIVE-IVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHHHH-HHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHHHH-HHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999765 7766533 3444445699999999854 3567899998775
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.0082 Score=59.29 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+|..++|.|++||||||+.+.|+.-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4778999999999999999999876554
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0072 Score=58.30 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0072 Score=62.54 Aligned_cols=23 Identities=35% Similarity=0.413 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+||+|||||||.+.|++-+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.014 Score=56.72 Aligned_cols=28 Identities=29% Similarity=0.416 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHH-hcC----CCCCCc
Q 040758 528 HLLVMGPSGSGKTSLLRAM-AGL----WSDGRG 555 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL-~gl----~~p~~G 555 (788)
+++|+|++|+|||||++.+ .+- +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 5999999999999999654 444 567766
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0093 Score=57.26 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
..+.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999997
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.11 Score=59.79 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=31.4
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhc----CCCCCCceEEE
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAG----LWSDGRGKITF 559 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g----l~~p~~G~I~~ 559 (788)
+.+.+..+-+++|.|.+|||||++++.|.. -+.|++-++.+
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lil 251 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIM 251 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEE
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEE
Confidence 445556788999999999999999997543 45677766665
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.0097 Score=61.98 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998743
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.08 E-value=0.0092 Score=63.01 Aligned_cols=33 Identities=33% Similarity=0.336 Sum_probs=26.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.|..+.|+|||||||||+.+.|+.-++ .|.+.+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~I 64 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVI 64 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEE
Confidence 467899999999999999999987543 355665
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.011 Score=57.42 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+..++|+|++||||||+.+.|+.-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999754
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0093 Score=58.35 Aligned_cols=28 Identities=18% Similarity=0.433 Sum_probs=24.4
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+++.+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999998754
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=57.29 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987554
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.00 E-value=0.02 Score=53.80 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|+.|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999987
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.0091 Score=57.68 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=18.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 357789999999999999999998543
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.013 Score=58.66 Aligned_cols=27 Identities=22% Similarity=0.533 Sum_probs=23.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|..+.|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998754
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.012 Score=55.25 Aligned_cols=24 Identities=33% Similarity=0.691 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|++|+|||||++.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 589999999999999999987543
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.86 E-value=0.016 Score=61.84 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=31.0
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
...+++..+.+ .|.-++|+|+||+||||+...|.+
T Consensus 132 ~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 35778888888 799999999999999999998887
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.82 E-value=0.013 Score=57.09 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDG 553 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~ 553 (788)
.+++|+|++|||||||++.|++.+...
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 478999999999999999999876543
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.01 Score=60.43 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+.+|+.++++|||||||||++.+++
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence 3579999999999999999988764
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=56.81 Aligned_cols=25 Identities=36% Similarity=0.559 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.-.++++|++|+|||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.015 Score=55.04 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=54.94 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.013 Score=57.68 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.016 Score=58.55 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=22.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998544
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.018 Score=56.84 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+|+.||||||+.+.|+..+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998644
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.016 Score=54.54 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.017 Score=55.23 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+.++|.|+.||||||+.+.|+..
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999863
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=94.63 E-value=0.015 Score=54.27 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.016 Score=54.13 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=94.59 E-value=0.016 Score=57.72 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999996543
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.021 Score=54.35 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.-+++|+|++|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999873
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=58.23 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999998644
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=60.54 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|||||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.017 Score=54.86 Aligned_cols=22 Identities=50% Similarity=0.723 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=94.55 E-value=0.016 Score=54.17 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+++|+|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.017 Score=54.32 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.016 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999998643
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.017 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=94.50 E-value=0.016 Score=54.41 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
--.++|+|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.017 Score=55.68 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 69999999999999999998754
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.017 Score=54.07 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999986
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.018 Score=54.88 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.019 Score=54.55 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.43 E-value=0.018 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.018 Score=54.81 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.018 Score=54.66 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999853
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.019 Score=57.25 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.019 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
+++|+|++|+|||||++.+.|-+..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999986543
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.02 Score=55.62 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.02 Score=56.47 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+++|.|++||||||+.+.|+.-+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3579999999999999999998644
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.019 Score=59.88 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|||++|+|||||++.|.+-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999988643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.02 Score=55.45 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.32 E-value=0.02 Score=55.10 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999875
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=94.26 E-value=0.02 Score=53.66 Aligned_cols=21 Identities=33% Similarity=0.570 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=94.23 E-value=0.082 Score=59.81 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=56.2
Q ss_pred CCCCChhHHHHHHHHH--HHcc---------------CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcchh
Q 040758 689 SSVLSLGEQQRLAFAR--LLLS---------------KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRTLY 751 (788)
Q Consensus 689 g~~LSGGQrQRiaIAR--ALl~---------------~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~~~ 751 (788)
...+||||+|-.-+|. ++++ .=.+++|||| |-+|.+..+..++.+++.|-=+|++|=. .+.
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~lglQliiatP~-~i~ 454 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERLDMQLLIAAPE-NIS 454 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHTTCEEEEEESS-SCC
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHcCCEEEEECcc-hhh
Confidence 4459999999543433 2222 1247999999 9999999999999999999999999987 666
Q ss_pred hcCCEEEEEc
Q 040758 752 DFHKRVLRIS 761 (788)
Q Consensus 752 ~~~D~Ilvl~ 761 (788)
.+.|.++.+-
T Consensus 455 p~v~~~~~~~ 464 (483)
T 3euj_A 455 PERGTTYKLV 464 (483)
T ss_dssp CSSSEEEECC
T ss_pred hccCceEEEE
Confidence 7889888774
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=94.21 E-value=0.021 Score=54.77 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.|.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999853
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=94.20 E-value=0.18 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.230 Sum_probs=42.4
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecC-----------cchhhcCCEEEEEc
Q 040758 708 SKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHR-----------RTLYDFHKRVLRIS 761 (788)
Q Consensus 708 ~~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr-----------~~~~~~~D~Ilvl~ 761 (788)
.+.+++++||+--..| ..++.+.+.+.|+.||+..++ ..++..||.|..|.
T Consensus 89 ~~~dvViIDEaQF~~~---v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD---IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT---HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh---HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999998865 666667777789999999999 24678899998875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.18 E-value=0.024 Score=56.78 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
++..+.|.||+|+|||||++.++.....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.021 Score=55.16 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.|.+-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999875
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.022 Score=54.81 Aligned_cols=21 Identities=43% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 13 ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.023 Score=56.27 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 356999999999999999999874
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.025 Score=53.78 Aligned_cols=22 Identities=41% Similarity=0.578 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.017 Score=55.32 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.-.++++|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34799999999999999999874
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.13 E-value=0.033 Score=53.64 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.12 E-value=10 Score=43.81 Aligned_cols=10 Identities=20% Similarity=0.517 Sum_probs=5.4
Q ss_pred EeeeEEEcCC
Q 040758 501 IEDLTLKTPT 510 (788)
Q Consensus 501 ~~nvsf~y~~ 510 (788)
++|++|..+.
T Consensus 371 l~~isl~i~~ 380 (598)
T 3qf4_B 371 LKDITFHIKP 380 (598)
T ss_dssp CCSEEEECCT
T ss_pred ccceEEEEcC
Confidence 4566665543
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.022 Score=55.28 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=94.11 E-value=0.055 Score=62.72 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=27.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+..+.|.|+.|+||||+++.|...+.....+|.+
T Consensus 203 ~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~ 237 (574)
T 3e1s_A 203 GHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGL 237 (574)
T ss_dssp TCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 46899999999999999999998766544344443
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.024 Score=58.10 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=22.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-.++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998543
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=94.08 E-value=0.023 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999975
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=94.07 E-value=0.023 Score=53.48 Aligned_cols=22 Identities=32% Similarity=0.626 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
-.++++|++|+|||||++.+.+
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999975
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=94.06 E-value=0.023 Score=53.89 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|+.|+|||||++.+.+
T Consensus 16 ~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.022 Score=56.11 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
..+.|.||+|+|||||++.++.......+.+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~ 86 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSL 86 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 78999999999999999999987655444454
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.03 E-value=0.014 Score=61.71 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=19.6
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998743
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.062 Score=65.29 Aligned_cols=29 Identities=34% Similarity=0.597 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
..+.|+||+|+|||++.+.|+.......+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~ 617 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEE 617 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 47899999999999999999987655443
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.025 Score=58.60 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|||||||++.|.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999863
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.026 Score=58.45 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..+.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.045 Score=52.24 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+|++|+|||||++.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHH
Confidence 58999999999999999998
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=53.87 Aligned_cols=22 Identities=36% Similarity=0.561 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.019 Score=62.82 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.|++.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.026 Score=58.04 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998743
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.026 Score=53.53 Aligned_cols=22 Identities=27% Similarity=0.579 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.023 Score=55.77 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.026 Score=53.90 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999999853
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=93.88 E-value=0.028 Score=57.80 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++|+|||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999743
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.027 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.026 Score=54.47 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=93.85 E-value=0.03 Score=56.12 Aligned_cols=26 Identities=27% Similarity=0.523 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..+.|+|+.||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998654
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=93.81 E-value=0.034 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.501 Sum_probs=23.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+..+.|+||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345779999999999999999998754
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=93.80 E-value=0.041 Score=53.35 Aligned_cols=22 Identities=23% Similarity=0.443 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+|++|+|||||++.+.+
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999987
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=93.79 E-value=0.028 Score=53.96 Aligned_cols=22 Identities=36% Similarity=0.684 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=93.73 E-value=0.03 Score=59.47 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|||++|+|||||++.|.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999984
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.032 Score=53.60 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.=+++++|++|+|||||++.+.+-
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999863
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.69 E-value=0.029 Score=55.62 Aligned_cols=24 Identities=38% Similarity=0.562 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-.++|+|++|+|||||++.|.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.69 E-value=0.02 Score=57.03 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+++|+|++|+|||||++.|.+-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.68 E-value=0.03 Score=54.36 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 10 ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHc
Confidence 699999999999999999986
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.031 Score=58.73 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=20.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999985
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=93.67 E-value=0.03 Score=54.77 Aligned_cols=22 Identities=36% Similarity=0.673 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=93.65 E-value=0.036 Score=59.75 Aligned_cols=27 Identities=30% Similarity=0.596 Sum_probs=23.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++..+.|+||+|||||||...|+.-+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 456899999999999999999998653
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=0.03 Score=54.12 Aligned_cols=22 Identities=45% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.03 Score=54.62 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999753
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=93.63 E-value=0.031 Score=53.51 Aligned_cols=21 Identities=33% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 479999999999999999885
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.62 E-value=0.031 Score=54.38 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999753
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.033 Score=58.20 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|.+|||||||++.|.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=93.61 E-value=0.046 Score=54.55 Aligned_cols=35 Identities=20% Similarity=0.222 Sum_probs=28.7
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
..++..-+.+ .|..++|+||||+|||||...|+.-
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4567766665 5888999999999999999998764
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=54.68 Aligned_cols=22 Identities=32% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5999999999999999999863
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.031 Score=54.04 Aligned_cols=22 Identities=45% Similarity=0.656 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4899999999999999999864
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.56 E-value=0.036 Score=54.21 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.034 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=93.50 E-value=0.034 Score=53.15 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999874
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.036 Score=55.68 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.054 Score=52.80 Aligned_cols=35 Identities=29% Similarity=0.324 Sum_probs=27.6
Q ss_pred ccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 513 ATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 513 ~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+..++..-+.+ .|.-++|.|+||+|||||...|..
T Consensus 4 ~~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 4 KQTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp CEEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred cEEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 34556655555 488999999999999999987775
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.033 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++|+|++|+|||||++.+.+-
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 36999999999999999999874
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.035 Score=55.35 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=93.48 E-value=0.026 Score=61.52 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=23.0
Q ss_pred cCCCCCChhHHHHHHHHHHH---cc--CCCEEEEecCC
Q 040758 687 EWSSVLSLGEQQRLAFARLL---LS--KPQIVLLDEST 719 (788)
Q Consensus 687 e~g~~LSGGQrQRiaIARAL---l~--~p~iLiLDEpT 719 (788)
+.|.++|+||+||++|+|+| ++ +++++++||||
T Consensus 292 ~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 292 DDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ---------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred cCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 44567999999999999999 77 89999999997
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.037 Score=57.35 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.|+|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.031 Score=54.08 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=93.46 E-value=0.035 Score=53.70 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 22 ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999975
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.037 Score=55.74 Aligned_cols=23 Identities=30% Similarity=0.627 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998644
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.038 Score=54.21 Aligned_cols=22 Identities=36% Similarity=0.690 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.052 Score=53.75 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.42 E-value=0.039 Score=53.26 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
=+++++|++|+|||||++.+.+
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999985
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.41 E-value=0.035 Score=53.89 Aligned_cols=22 Identities=45% Similarity=0.554 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=93.37 E-value=0.043 Score=53.61 Aligned_cols=24 Identities=33% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|++|+|||||++.+.+-+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 699999999999999999988544
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=0.043 Score=57.07 Aligned_cols=31 Identities=19% Similarity=0.497 Sum_probs=23.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.+++++|.+|+|||||++.|.|-..+..|.+
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~ 130 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQ 130 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC------
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCC
Confidence 5899999999999999999998766544443
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.037 Score=53.71 Aligned_cols=22 Identities=27% Similarity=0.594 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.036 Score=53.24 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.29 E-value=0.037 Score=54.75 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 589999999999999998775
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=93.28 E-value=0.039 Score=58.66 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.|.|-
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.023 Score=62.33 Aligned_cols=52 Identities=23% Similarity=0.418 Sum_probs=39.4
Q ss_pred cEEEeeeEEEcCCCCcccee-----------eeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 498 LLDIEDLTLKTPTSKATLVR-----------DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~-----------~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...|++++--||. .+.-++ |.=+.|-+|++.+|+|++|+|||||+..|++..
T Consensus 137 r~~fe~l~Pi~P~-~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 137 RVNFDNLTPDYPR-ERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp CCCGGGSCEECCC-SBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ccccccCCCCCch-hhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 4456666655654 333445 566789999999999999999999999888753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.032 Score=55.67 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=22.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998755
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.038 Score=54.24 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999863
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.039 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5999999999999999999864
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.038 Score=54.91 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-.++|+|++|+|||||++.|++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999988653
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=93.22 E-value=0.048 Score=55.25 Aligned_cols=25 Identities=24% Similarity=0.480 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..+.|+|+.||||||+.+.|+.-+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.26 Score=63.47 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=30.7
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=+++|+.+.|.||+|+|||||+..++.......|.+.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vly 765 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 765 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEE
Confidence 38999999999999999999999888755444455544
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.17 E-value=0.04 Score=53.10 Aligned_cols=22 Identities=41% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.04 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.516 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999874
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.041 Score=53.31 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|+.|+|||||++.+.+
T Consensus 24 ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999985
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.041 Score=53.58 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999863
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.04 Score=56.17 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=22.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+|..+.|.|++||||||+.+.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999987654
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=93.11 E-value=0.043 Score=57.99 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|+.|+|||||++.|+|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999864
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.11 E-value=0.046 Score=54.31 Aligned_cols=21 Identities=43% Similarity=0.724 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999986
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.047 Score=54.02 Aligned_cols=22 Identities=41% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|+.|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.041 Score=54.02 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.4
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999853
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.09 E-value=0.042 Score=53.74 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++|+|+.|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.046 Score=56.54 Aligned_cols=22 Identities=36% Similarity=0.681 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++++|++|+|||||++.|.|-
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.049 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=.++++|++|+|||||++.+.+-
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999863
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=0.048 Score=54.94 Aligned_cols=29 Identities=21% Similarity=0.291 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
-+|..+.|.|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36889999999999999999999876543
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=93.02 E-value=0.034 Score=53.00 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 9 ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999886
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.041 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.444 Sum_probs=23.5
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+..+.|+||+|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3466789999999999999999987543
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=93.02 E-value=0.05 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++++|++|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.01 E-value=0.042 Score=61.81 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=34.6
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++.+ +.+-+|++++|+|++|+|||||++.|++-.....|.|.+
T Consensus 140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V 184 (473)
T 1sky_E 140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV 184 (473)
T ss_dssp HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence 355555 677889999999999999999999998765543444444
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.047 Score=56.67 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++++|++|+|||||++.|.+-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999743
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=92.93 E-value=0.048 Score=53.16 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=.++|+|++|+|||||++.+.+
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999975
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.047 Score=52.91 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHh
Confidence 589999999999999988864
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.055 Score=55.48 Aligned_cols=27 Identities=15% Similarity=0.428 Sum_probs=24.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.034 Score=53.24 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.048 Score=58.90 Aligned_cols=25 Identities=32% Similarity=0.523 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999997654
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.052 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=92.79 E-value=17 Score=41.75 Aligned_cols=31 Identities=6% Similarity=-0.038 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
+..+..+.....+.+....+...++.+.++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~ 111 (582)
T 3b60_A 81 TSYISSYCISWVSGKVVMTMRRRLFGHMMGM 111 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4444555555555666666666667776664
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.048 Score=56.98 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
=.++|+|++|+|||||++.|.|-.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 369999999999999999999864
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.06 Score=54.26 Aligned_cols=27 Identities=19% Similarity=0.339 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..+.+.|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999987554
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=92.77 E-value=0.048 Score=53.43 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999863
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.056 Score=60.07 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.+.+.|+|++||||||+.+.|+.-+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=92.73 E-value=17 Score=41.68 Aligned_cols=32 Identities=6% Similarity=-0.045 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 209 PFFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 209 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
++..+..++...++.+....+...++.+.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 111 (582)
T 3b5x_A 80 LSGFASSYCLSWVSGNVVMQMRRRLFNHFMHM 111 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34445555555566666666666667776664
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=92.69 E-value=0.066 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++.+.+-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.69 E-value=0.058 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|||++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 59999999999999999998643
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=92.63 E-value=0.055 Score=56.76 Aligned_cols=30 Identities=27% Similarity=0.395 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
..+.|+|++||||||+.+.|+..+ .|-..+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~---~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC---CCcEEe
Confidence 468999999999999999998622 244555
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.18 Score=60.41 Aligned_cols=110 Identities=22% Similarity=0.280 Sum_probs=0.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC-CCCCceEEEeeccCcccccCCCccchhhhcccccccchhcccccCcceEEEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW-SDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFL 602 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~-~p~~G~I~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v 602 (788)
+|--.+.|+||+|+|||++.+.|+... ....--|.+| ++-.
T Consensus 519 ~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~--------------------------------------~s~~ 560 (758)
T 3pxi_A 519 RPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID--------------------------------------MSEY 560 (758)
T ss_dssp SCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE--------------------------------------GGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe--------------------------------------chhc
Q ss_pred ccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCCCChHHHHHHHHhcccccccccCCCc
Q 040758 603 PQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL 682 (788)
Q Consensus 603 ~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~g~ 682 (788)
+....
T Consensus 561 ~~~~~--------------------------------------------------------------------------- 565 (758)
T 3pxi_A 561 MEKHS--------------------------------------------------------------------------- 565 (758)
T ss_dssp CSSCC---------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Q ss_pred cccccCCCCCChhHHHHHHHHHHHccCC-CEEEEecCCCCCCHHHHHHHHHHHHh-------------cCCEEEEEec--
Q 040758 683 DTTYEWSSVLSLGEQQRLAFARLLLSKP-QIVLLDESTSALDEANEAHLYEQIEA-------------AGITYISVGH-- 746 (788)
Q Consensus 683 ~t~~e~g~~LSGGQrQRiaIARALl~~p-~iLiLDEpTSaLD~~se~~i~~~L~~-------------~g~TvI~IaH-- 746 (788)
.|+|+ +..++-+.| .+|+|||. ..+++.....+.+.|.+ .+..+|++|+
T Consensus 566 ---------~~~~~-----l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 566 ---------TSGGQ-----LTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp ---------CC--------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ---------cccch-----hhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Q ss_pred ---------------CcchhhcCCEEEEEc
Q 040758 747 ---------------RRTLYDFHKRVLRIS 761 (788)
Q Consensus 747 ---------------r~~~~~~~D~Ilvl~ 761 (788)
|.++...+|.++.+.
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~ 660 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFH 660 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecC
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=92.61 E-value=0.064 Score=54.18 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=27.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
++|..+.+-|++||||||+.+.|..-+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 46999999999999999999999987665 3443
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.60 E-value=0.054 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999854
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.59 E-value=0.069 Score=49.87 Aligned_cols=32 Identities=16% Similarity=0.341 Sum_probs=25.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+.+..+.|.||+|+|||++.+.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 34567999999999999999999986554333
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=92.57 E-value=0.26 Score=49.55 Aligned_cols=52 Identities=15% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcc-----------hhhcCCEEEEEcc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT-----------LYDFHKRVLRIST 762 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~-----------~~~~~D~Ilvl~~ 762 (788)
+.+++++||+-- +|++.. .+.+.+...|+.||+..+|.+ ++..||.|..|..
T Consensus 101 ~~dvViIDEaQF-~~~~~V-~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDIV-EVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTHH-HHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHHH-HHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 579999999976 876655 334444556999999999533 5678999998864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.57 E-value=0.057 Score=55.10 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=22.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++...+.|.||+|+||||+++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 345668999999999999999998754
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=92.56 E-value=17 Score=41.75 Aligned_cols=39 Identities=10% Similarity=-0.082 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040758 202 GAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKD 240 (788)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~ 240 (788)
++.++..++.++..+....++.+....+....+.+.++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~ 107 (578)
T 4a82_A 69 IFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQAL 107 (578)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 333344445555566666666666666666667776664
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.06 Score=54.76 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=23.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..++|.|+.||||||+.+.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999997663
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.062 Score=54.60 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..+.+.|++||||||+.+.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999999987554
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.43 E-value=0.025 Score=60.45 Aligned_cols=38 Identities=32% Similarity=0.459 Sum_probs=29.2
Q ss_pred cceeeeeEEEeCC--CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 514 TLVRDLSLVINEK--EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 514 ~vL~~isl~i~~G--e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+++.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3555555555555 4599999999999999999998653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.046 Score=52.72 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=19.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
=.++++|++|+|||||++.+.+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999999864
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=92.35 E-value=0.032 Score=55.26 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998853
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=92.33 E-value=0.064 Score=57.55 Aligned_cols=25 Identities=36% Similarity=0.627 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.33 E-value=0.059 Score=53.72 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+++|+|++|+|||||++-+++-
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 36899999999999999988864
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=92.32 E-value=0.042 Score=56.76 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=24.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++..++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5678999999999999999999998763
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.021 Score=58.86 Aligned_cols=32 Identities=41% Similarity=0.657 Sum_probs=25.1
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.++++..++| +.|.||+|+|||||++.+++.
T Consensus 36 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 36 YANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 44444555555 889999999999999999874
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.067 Score=52.56 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999998753
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.066 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 34689999999999999988874
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=92.02 E-value=0.036 Score=54.10 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=4.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5999999999999999988764
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.86 E-value=0.067 Score=54.08 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=23.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++..++.|+||.||||+|..+.|+.-|
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3556789999999999999999998654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.85 E-value=0.075 Score=53.04 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.++|+|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=91.83 E-value=0.083 Score=56.28 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3478999999999999999998765
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=91.74 E-value=0.024 Score=63.39 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=28.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.+++++|++|+||||++..|++.+.....++.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVll 132 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPAL 132 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 589999999999999999999987655556765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.078 Score=52.72 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
=+++|+|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.091 Score=55.97 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=24.6
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-+++|+.+.|.||+|+|||||..-++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.087 Score=55.89 Aligned_cols=26 Identities=38% Similarity=0.546 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++-+++|+|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999987653
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.083 Score=51.99 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++|+|++|+|||||++.+.+
T Consensus 11 ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999885
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=0.092 Score=55.08 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=22.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++..+.|.||+|+||||+.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999888754
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.19 Score=65.50 Aligned_cols=45 Identities=20% Similarity=0.179 Sum_probs=31.8
Q ss_pred cceeeeeEE---EeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 514 TLVRDLSLV---INEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 514 ~vL~~isl~---i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+-|+.+ +. +++|+.+.|.||+|+|||||..-++.-.....+.+.+
T Consensus 369 ~~LD~l-LG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vly 416 (2050)
T 3cmu_A 369 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF 416 (2050)
T ss_dssp HHHHHH-HSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHHHH-hccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 345544 33 8999999999999999999988776543333334433
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.11 Score=54.49 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
+-.++++|.+|+|||||+|.|.|-.....|
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 347999999999999999999986544333
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.12 Score=51.98 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=22.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+.+.|.|++|+|||||..-++
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999975443
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.095 Score=57.82 Aligned_cols=24 Identities=25% Similarity=0.508 Sum_probs=21.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++|+||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.12 Score=50.41 Aligned_cols=22 Identities=50% Similarity=0.705 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+.|.||.|+|||||++.++..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999864
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.1 Score=56.92 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=23.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.11 Score=55.44 Aligned_cols=27 Identities=33% Similarity=0.522 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+...+.|.||+|+|||||++.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456789999999999999999999865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.63 E-value=28 Score=39.95 Aligned_cols=13 Identities=0% Similarity=0.120 Sum_probs=9.1
Q ss_pred EEeeeEEEcCCCC
Q 040758 500 DIEDLTLKTPTSK 512 (788)
Q Consensus 500 ~~~nvsf~y~~~~ 512 (788)
.++|++|.-+.++
T Consensus 358 ~l~~isl~i~~Ge 370 (587)
T 3qf4_A 358 VLSGVNFSVKPGS 370 (587)
T ss_dssp SEEEEEEEECTTC
T ss_pred ceeceEEEEcCCC
Confidence 4788888876543
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=90.52 E-value=0.12 Score=56.94 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|||.+|+|||||++.|.|--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.13 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999755
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.13 Score=51.25 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=23.0
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
|..|+|-|+-||||||++++|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987664
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.11 Score=57.93 Aligned_cols=22 Identities=23% Similarity=0.528 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999984
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=90.40 E-value=0.12 Score=56.02 Aligned_cols=25 Identities=48% Similarity=0.822 Sum_probs=22.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+..+.|.||+|+||||+.+.|+...
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4568899999999999999999876
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=90.32 E-value=0.11 Score=56.76 Aligned_cols=25 Identities=20% Similarity=0.372 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++..++++|.+|+|||||+|.|.|-
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhh
Confidence 5788999999999999999999985
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.71 E-value=0.054 Score=53.11 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=19.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.=.++++|++|+|||||++.+.+
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 34699999999999999988764
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=90.08 E-value=0.095 Score=48.83 Aligned_cols=28 Identities=14% Similarity=0.183 Sum_probs=23.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+.+.-+.|.||+|+|||++.+.|.....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3456699999999999999999988654
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=90.08 E-value=0.1 Score=51.90 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=30.2
Q ss_pred HHHHHHHHccCCCEEEEecCCC-----CCCHHHHHHHHHHHHh
Q 040758 699 RLAFARLLLSKPQIVLLDESTS-----ALDEANEAHLYEQIEA 736 (788)
Q Consensus 699 RiaIARALl~~p~iLiLDEpTS-----aLD~~se~~i~~~L~~ 736 (788)
.-.|++.+..+|..-..++|+. .+|+...+.+.+.++.
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEV 208 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhh
Confidence 4478889999999988888876 6888888888777654
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.13 Score=53.07 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=22.8
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++...+.|.||+|+|||||++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45567999999999999999999875
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 788 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-28 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-26 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-23 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-22 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-22 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-21 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-21 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-21 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-18 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 7e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 5e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-15 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-13 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-13 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-11 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-08 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 4e-07 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 5e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-06 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 0.001 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 0.002 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 0.004 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 110 bits (277), Expect = 9e-28
Identities = 60/263 (22%), Positives = 109/263 (41%), Gaps = 59/263 (22%)
Query: 488 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547
GA E Q +DI+ ++ + ++A +++D++L I + E + +G SG GK++L+ +
Sbjct: 6 GAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP 65
Query: 548 GLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPY 607
+ G+I + N+ + RN G+ Q
Sbjct: 66 RFYDVTSGQILI--------------------DGHNIK-DFLTGSLRNQIGLVQ--QDNI 102
Query: 608 MVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKAL 667
+ ++++ ++ T + +AAK A D I L
Sbjct: 103 LFSDTVKENILLGRPTATDEEVVEAAKMANA----------------------HDFIMNL 140
Query: 668 EDVKLGYILPRLNSLDTTY-EWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
DT E LS G++QRL+ AR+ L+ P I++LDE+TSALD +
Sbjct: 141 PQ-----------GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 189
Query: 727 EAHLYEQIE--AAGITYISVGHR 747
E+ + E ++ + T + V HR
Sbjct: 190 ESIIQEALDVLSKDRTTLIVAHR 212
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 107 bits (268), Expect = 1e-26
Identities = 54/280 (19%), Positives = 105/280 (37%), Gaps = 64/280 (22%)
Query: 487 NGALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
G +++ L+ ++T P + +R+++L I + + ++G SGSGK+++ +
Sbjct: 2 EGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS--RGVFFLPQ 604
+ G I +G R S V + Q
Sbjct: 62 TRFYDIDEGHILM-------------------------DGHDLREYTLASLRNQVALVSQ 96
Query: 605 RPYMVLGSLRQQLIY-PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL 663
++ ++ + Y T + +AA+ A D
Sbjct: 97 NVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA----------------------MDF 134
Query: 664 IKALEDVKLGYILPRLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSAL 722
I +++ LDT E +LS G++QR+A AR LL I++LDE+TSAL
Sbjct: 135 INKMDN-----------GLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 183
Query: 723 DEANEAHLYEQIE--AAGITYISVGHRRTLYDFHKRVLRI 760
D +E + ++ T + + HR + + ++ +
Sbjct: 184 DTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVV 223
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.8 bits (246), Expect = 1e-23
Identities = 52/265 (19%), Positives = 102/265 (38%), Gaps = 59/265 (22%)
Query: 488 GALSPEKSQKLLDIEDLTLKTPTSKATLV-RDLSLVINEKEHLLVMGPSGSGKTSLLRAM 546
G L+P + L+ +D++ P LV + L+ + E ++GP+GSGK+++ +
Sbjct: 1 GLLTPLHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALL 60
Query: 547 AGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP 606
L+ G++ + + + R ++R V + Q P
Sbjct: 61 QNLYQPTGGQLLL--------------------DGKPLPQYEHRYLHRQ---VAAVGQEP 97
Query: 607 YMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA 666
+ SL++ + Y LT +E + + K I
Sbjct: 98 QVFGRSLQENIAYG---------------------LTQKPTMEEITAAAVKSGAHSFISG 136
Query: 667 LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEAN 726
L + E S LS G++Q +A AR L+ KP +++LD++TSALD +
Sbjct: 137 LPQGYDTEV----------DEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANS 186
Query: 727 EAHLYEQI----EAAGITYISVGHR 747
+ + + + E + + +
Sbjct: 187 QLQVEQLLYESPERYSRSVLLITQH 211
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 2e-22
Identities = 51/252 (20%), Positives = 97/252 (38%), Gaps = 63/252 (25%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
++ + ++ +++L I + E + ++G SGSGK++L + + + G++
Sbjct: 4 FRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI- 62
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS--RGVFFLPQRPYMVLGSLRQQLI 618
+G + N R V + Q ++ S+ +
Sbjct: 63 ------------------------DGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNIS 98
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
V+ AAK AG F+ +++ GY
Sbjct: 99 LANPGMSVEKVIYAAKLAGAHDFI-------------------------SELREGY---- 129
Query: 679 LNSLDTTYEWS-SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE-- 735
+T + LS G++QR+A AR L++ P+I++ DE+TSALD +E + +
Sbjct: 130 ----NTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI 185
Query: 736 AAGITYISVGHR 747
G T I + HR
Sbjct: 186 CKGRTVIIIAHR 197
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 94.7 bits (235), Expect = 3e-22
Identities = 43/253 (16%), Positives = 93/253 (36%), Gaps = 50/253 (19%)
Query: 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556
++L E++ KA + +S+ +N+ + L++GP+GSGK++L+ + G G+
Sbjct: 3 EILRTENIVKYFGEFKA--LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
Query: 557 ITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQ 616
+ F KD + G+ Q P +
Sbjct: 61 VYFENKDITNKEPA----------------------ELYHYGIVRTFQTPQPLKE----- 93
Query: 617 LIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYIL 676
T E + + L ++ K P +++++ IL
Sbjct: 94 ---MTVLENLL----------IGEICPGESPLNSLFYKKWIPKEEEMVEKAFK-----IL 135
Query: 677 PRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE- 735
L + LS G+ + + R L++ P+++++DE + + ++ +
Sbjct: 136 EFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE 195
Query: 736 --AAGITYISVGH 746
A GIT++ + H
Sbjct: 196 LKAKGITFLIIEH 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 94.2 bits (234), Expect = 3e-22
Identities = 48/268 (17%), Positives = 97/268 (36%), Gaps = 63/268 (23%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+L + S+ L RD+S + GPSG GK+++ + + G+I
Sbjct: 1 MLSARHVDFAYDDSEQIL-RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNS--RGVFFLPQRPYMVLGSLRQ 615
T +G+ +++ + + F+ Q ++ G++R+
Sbjct: 60 TI-------------------------DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRE 94
Query: 616 QLIY-PTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
L Y + A ++ + D
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFA----------------------RSFVENMPDQLNTE 132
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+ E +S G++QRLA AR L P+I++LDE+T++LD +E+ + + +
Sbjct: 133 V----------GERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 735 E--AAGITYISVGHRRTLYDFHKRVLRI 760
+ G T + + HR + ++ I
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFI 210
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 91.8 bits (228), Expect = 2e-21
Identities = 55/272 (20%), Positives = 110/272 (40%), Gaps = 63/272 (23%)
Query: 498 LLDIEDLTLKTPTSKATL--VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++ ++++T + + +++++L I E E + +MGPSGSGK+++L + L G
Sbjct: 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG 60
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQ 615
++ + T ++ + L + +G + Q
Sbjct: 61 EVYI-------------------------DNIKTNDLDDDE-----LTKIRRDKIGFVFQ 90
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL---ENVGRKSSKPSTDDLIKALEDVKL 672
Q L+P LT+ + + + + + +ALE +K+
Sbjct: 91 Q-------------------FNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 673 GYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYE 732
+ R + + LS G+QQR+A AR L + P I+L D+ T ALD + +
Sbjct: 132 AELEERFAN-----HKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 733 QI----EAAGITYISVGHRRTLYDFHKRVLRI 760
+ E G T + V H + F +R++ +
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYL 218
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 92.2 bits (229), Expect = 2e-21
Identities = 47/255 (18%), Positives = 85/255 (33%), Gaps = 57/255 (22%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L + DL + + ++ +SL + + ++G SGSGK++ LR + L G I
Sbjct: 3 LHVIDLHKRYGGHEV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+ +++ + + + + + Q
Sbjct: 61 VNGQ----------NINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF------------ 98
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDL----IKALEDVKLGY 674
L +T + + + S D +K L V +
Sbjct: 99 ------------------NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID- 139
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
Y LS G+QQR++ AR L +P ++L DE TSALD + +
Sbjct: 140 -----ERAQGKY--PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIM 192
Query: 735 EA---AGITYISVGH 746
+ G T + V H
Sbjct: 193 QQLAEEGKTMVVVTH 207
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.5 bits (227), Expect = 6e-21
Identities = 45/235 (19%), Positives = 79/235 (33%), Gaps = 72/235 (30%)
Query: 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575
+++++L I + E L + G +GSGKTSLL + G G I
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKH---------------- 95
Query: 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKS 635
+G V F Q +++ G++++ +I+ +E + K+
Sbjct: 96 ---------SGR-----------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYK-SVVKA 134
Query: 636 AGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLG 695
L +T + +N E LS G
Sbjct: 135 CQLQQDITKFAEQDN--------------------------------TVLGEGGVTLSGG 162
Query: 696 EQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI---EAAGITYISVGHR 747
++ R++ AR + + LLD LD E ++E A T I V +
Sbjct: 163 QRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSK 217
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 88.3 bits (219), Expect = 3e-20
Identities = 54/252 (21%), Positives = 92/252 (36%), Gaps = 67/252 (26%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ +E+LT + A V L+L I + E L+++GPSG GKT+ LR +AGL G+I
Sbjct: 7 VKLENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
F + R + + Q
Sbjct: 65 F-------------------------GDRDVTYLPPKDRNISMVFQSY------------ 87
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
+ P +T + + + P + + +L I
Sbjct: 88 ------------------AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL 129
Query: 679 LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA-- 736
LN + + LS G++QR+A AR ++ +P ++L+DE S LD + +I+
Sbjct: 130 LNR------YPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 737 --AGITYISVGH 746
+T I V H
Sbjct: 184 QKLKVTTIYVTH 195
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 81.5 bits (201), Expect = 3e-18
Identities = 48/269 (17%), Positives = 99/269 (36%), Gaps = 76/269 (28%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
L+I DL++ ++ +++ I + + GP+G GKT+LL+ ++ +G+I
Sbjct: 3 LEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+ + + +FFLP+ +
Sbjct: 60 YNGVP----------------------------ITKVKGKIFFLPEEIIVP--------- 82
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR-KSSKPSTDDLIKALEDVKLGYILP 677
++ L+ V K + ++++ ALE V++ +
Sbjct: 83 ---------------------RKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKK 121
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--- 734
+L LS G +R+ A LL +I +LD+ A+DE ++ + + I
Sbjct: 122 KLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 171
Query: 735 -EAAGITYISVGHRRTLYDFHKRVLRIST 762
+ GI IS + D ++ + + ST
Sbjct: 172 LKEKGIVIISSREELSYCDVNENLHKYST 200
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.7 bits (204), Expect = 3e-18
Identities = 48/255 (18%), Positives = 89/255 (34%), Gaps = 63/255 (24%)
Query: 495 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGR 554
S +L+++ L + A ++ + L + + + ++G +G+GKT+ L A+AGL
Sbjct: 3 SDIVLEVQSLHVYYGAIHA--IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV---- 56
Query: 555 GKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
++ + + N G+ +P+ +
Sbjct: 57 ------------------RAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI------ 92
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
+P T A RK + DL
Sbjct: 93 ----FPELTVYENLMMGA------------------YNRKDKEGIKRDLEWIFS------ 124
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+ PRL LS GEQQ LA R L+S+P+++++DE + L + ++E I
Sbjct: 125 LFPRLKERLKQL--GGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 735 E---AAGITYISVGH 746
+ G T + V
Sbjct: 183 QKINQEGTTILLVEQ 197
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 81.5 bits (201), Expect = 7e-18
Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 72/260 (27%)
Query: 498 LLDIEDLTLKTPTSKATL--VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555
++ + ++T T+ + ++SL + + V+G SG+GK++L+R + L G
Sbjct: 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 556 KITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRP-----YMVL 610
+ + Q + + + R + + Q V
Sbjct: 61 SVLV--------------------DGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVF 100
Query: 611 GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDV 670
G++ L P + + + L V
Sbjct: 101 GNVALPLELDNT-----PKDEVKRRV---------------------------TELLSLV 128
Query: 671 KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730
LG + +S S LS G++QR+A AR L S P+++L DE+TSALD A +
Sbjct: 129 GLG---DKHDSY------PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSI 179
Query: 731 ----YEQIEAAGITYISVGH 746
+ G+T + + H
Sbjct: 180 LELLKDINRRLGLTILLITH 199
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 78.1 bits (192), Expect = 1e-16
Identities = 53/256 (20%), Positives = 91/256 (35%), Gaps = 67/256 (26%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+ + D+ A VR++SL + + E ++++GPSG GKT+ LR +AGL RG+I
Sbjct: 3 GVRLVDVWKVFGEVTA--VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 558 TF---YVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLR 614
V D E+ + + Q+ P
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYA---------------LYPHMTVY------ 99
Query: 615 QQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGY 674
+ +P + + + + + E + L
Sbjct: 100 DNIAFPLK----------------------------LRKVPRQEIDQRVREVAELLGLTE 131
Query: 675 ILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734
+L R LS G++QR+A R ++ KPQ+ L+DE S LD + ++
Sbjct: 132 LLNR---------KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 735 ----EAAGITYISVGH 746
G+T I V H
Sbjct: 183 KKLQRQLGVTTIYVTH 198
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 75.8 bits (186), Expect = 5e-16
Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 62/237 (26%)
Query: 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558
+ ++DL + + ++ +S I E E ++GP+G+GKT+ LR ++ L G +T
Sbjct: 3 VVVKDLRKRIGKKEI--LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 559 FYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
+ EV + + +LP+
Sbjct: 61 V--------FGKNVVEEPHEVR----------------KLISYLPEEA------------ 84
Query: 619 YPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPR 678
G + + L V + S++ ++ + +
Sbjct: 85 ------------------GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEK 126
Query: 679 LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735
+ + S S G ++L AR L+ P++ +LDE TS LD N + + ++
Sbjct: 127 IK------DRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 177
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 74.6 bits (183), Expect = 2e-15
Identities = 49/262 (18%), Positives = 93/262 (35%), Gaps = 85/262 (32%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
++ ++D+ +++T + LS + E L ++GP+G+GK++LL MAG+ S +G I
Sbjct: 3 VMQLQDV------AESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-KGSI 55
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVF--FLPQRPYMVLGSLRQ 615
F G+ + + + +L Q+ +
Sbjct: 56 QF-------------------------AGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90
Query: 616 QLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYI 675
+ + K T+ L + L
Sbjct: 91 HYLTL--------------------------------HQHDKTRTELLNDVAGALALDDK 118
Query: 676 LPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEA 728
L R ++ LS GE QR+ A ++L Q++LLDE ++LD A ++
Sbjct: 119 LGRS---------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQS 169
Query: 729 HLYEQIEA---AGITYISVGHR 747
L + + A G+ + H
Sbjct: 170 ALDKILSALCQQGLAIVMSSHD 191
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 74.4 bits (182), Expect = 2e-15
Identities = 49/253 (19%), Positives = 89/253 (35%), Gaps = 60/253 (23%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+ +++++ K + ++++ I E ++GPSG+GKT+ +R +AGL G++
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
F + + + + R + + Q
Sbjct: 63 YF--------------------DDRLVASNGKLIVPPEDRKIGMVFQ------------- 89
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
+ L P LT+ + + + + E K+ I
Sbjct: 90 -----------------TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHH 132
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL----YEQ 733
LN + LS +QQR+A AR L+ P ++LLDE S LD E
Sbjct: 133 VLN------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEV 186
Query: 734 IEAAGITYISVGH 746
G+T + V H
Sbjct: 187 QSRLGVTLLVVSH 199
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 68.4 bits (167), Expect = 2e-13
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 67/250 (26%)
Query: 501 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560
++++T +D++L I+E E ++ +GPSG GK++LLR +AGL + G +
Sbjct: 3 LQNVTKAWGEVVV--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 561 VKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYP 620
K +T V + Q+ P++ + + + +
Sbjct: 61 EKRMNDTPPAERGVG---MVFQSYA------------------LYPHLS---VAENMSFG 96
Query: 621 TWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLN 680
K + + + E ++L ++L R
Sbjct: 97 LKLAGAKKEVINQR----------------------------VNQVAEVLQLAHLLDRK- 127
Query: 681 SLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EA 736
LS G++QR+A R L+++P + LLDE S LD A + +I +
Sbjct: 128 --------PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179
Query: 737 AGITYISVGH 746
G T I V H
Sbjct: 180 LGRTMIYVTH 189
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 67.4 bits (164), Expect = 3e-13
Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 71/253 (28%)
Query: 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557
+++IE L+ + + + + +LSL + E+ +++GP+G+GKT L +AG G+I
Sbjct: 1 MIEIESLS-RKWKNFS--LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 558 TFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQL 617
G+ ++ + F+ Q
Sbjct: 58 LLD-------------------------GKDVTDLSPEKHDIAFVYQNY----------- 81
Query: 618 IYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILP 677
L P + + LE R ++ D+K+ ++L
Sbjct: 82 -------------------SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD 122
Query: 678 RLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI--- 734
R LS GEQQR+A AR L++ P+I+LLDE SALD + + E +
Sbjct: 123 R---------NPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL 173
Query: 735 -EAAGITYISVGH 746
+ +T + + H
Sbjct: 174 HKKNKLTVLHITH 186
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 58.1 bits (140), Expect = 6e-10
Identities = 48/252 (19%), Positives = 89/252 (35%), Gaps = 77/252 (30%)
Query: 518 DLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577
++ + +++ +++GP+G+GK+ L +AG+ RG++
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL------------------ 57
Query: 578 EVNSQNMNGELTRSMNRNSRGVFFLPQR----PYMVLGSLRQQLIYPTWTEEVKPASDAA 633
NG + RG+ F+PQ P++ + + + Y E
Sbjct: 58 -------NGADITPLPPERRGIGFVPQDYALFPHLSVY---RNIAYGLRNVERVERDRRV 107
Query: 634 KSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLS 693
+ A+KL KP+ LS
Sbjct: 108 REM--------AEKLGIAHLLDRKPAR-------------------------------LS 128
Query: 694 LGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI----EAAGITYISVGH-RR 748
GE+QR+A AR L+ +P+++LLDE SA+D + L E++ + + V H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 749 TLYDFHKRVLRI 760
V +
Sbjct: 189 EAAMLADEVAVM 200
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 50.3 bits (118), Expect = 4e-07
Identities = 42/328 (12%), Positives = 97/328 (29%), Gaps = 15/328 (4%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
+ +R+ + PY + ++ A + GI + L + + + +
Sbjct: 1 MIKRYLQFVKPYKY---------RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALT 51
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSII 252
+++ + A + FV+ E + W + + K + +
Sbjct: 52 TDEKVHHLTIAIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARF 111
Query: 253 DNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPP------LFVVLLVYS 306
+Q + L + I+ + L + L
Sbjct: 112 YANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIF 171
Query: 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFR 366
L L + + A+ + L + + +A EDNE + ++
Sbjct: 172 PFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNT 231
Query: 367 SAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHIL 426
+ + + + + I+ V A + SG I G + V +
Sbjct: 232 NFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLF 291
Query: 427 GDFSLIVYQFQAISAFSAVIDRLGEFDD 454
G +V F ++ A +DR+ + D
Sbjct: 292 GPLRRLVASFTTLTQSFASMDRVFQLID 319
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 49.9 bits (117), Expect = 5e-07
Identities = 34/322 (10%), Positives = 88/322 (27%), Gaps = 10/322 (3%)
Query: 133 LFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQEQ 192
FRR W AP+ L +A + + A + + L + D+
Sbjct: 3 TFRRLWPTIAPFKA-------GLIVAGIALILNAASDTFMLS-LLKPLLDDGFGKTDRSV 54
Query: 193 FAKQLLYYLGAFAGGIPFFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSII 252
L +G + Y ++ + M + +
Sbjct: 55 LLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHM--MGMPVAFFDKQST 112
Query: 253 DNPDQRIVDDLSSFTGTALSFSLTLFNAAVDLISFSNILYGIYPPLFVVLLVYSIGGTAI 312
RI D ++ +T+ +I +++ L ++L+V + +
Sbjct: 113 GTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIA 172
Query: 313 SIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQRFRSAFENL 372
+ K +++ + ++ + + + + G++ E + +
Sbjct: 173 IRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQG 232
Query: 373 TRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLI 432
+++ +S + L + + G I S+ ++ +
Sbjct: 233 MKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSL 292
Query: 433 VYQFQAISAFSAVIDRLGEFDD 454
A L D
Sbjct: 293 TNVNAQFQRGMAACQTLFAILD 314
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 11/91 (12%), Positives = 26/91 (28%), Gaps = 1/91 (1%)
Query: 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGE 587
+++ G G GKT+L++ + ET T +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRII-TTEGKKKIFS 60
Query: 588 LTRSMNRNSRGVFFLPQRPYMVLGSLRQQLI 618
++ G + + + + L +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEELAIPILERA 91
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 529 LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNM 584
+V PSG+GK+SL++A+ +++ R+ VN
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEF 60
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 38.0 bits (87), Expect = 0.002
Identities = 21/157 (13%), Positives = 44/157 (28%), Gaps = 8/157 (5%)
Query: 529 LLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGEL 588
L SG+GKT+LL+ + + + D DS E+
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGA--AQ 62
Query: 589 TRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKL 648
T ++ + + + + + + +
Sbjct: 63 TIVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLI-----LVEGFKHEEIAKIVLFR 117
Query: 649 ENVGRKSSKPSTDDLIKAL-EDVKLGYILPRLNSLDT 684
+ G + + D + A+ DV L + L+ D
Sbjct: 118 DGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDV 154
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 38.0 bits (87), Expect = 0.004
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 528 HLLVMGPSGSGKTSLLRAMAGL 549
+LV G G+GK++ +RA+A L
Sbjct: 30 GVLVFGDRGTGKSTAVRALAAL 51
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 788 | |||
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.9 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.89 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.8 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.69 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.11 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.6 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.71 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.5 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 97.19 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.15 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.96 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.96 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.9 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.83 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.79 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.77 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 96.72 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.69 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.65 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.56 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.55 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.52 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.52 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.51 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.5 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.49 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.38 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.29 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.27 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.26 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.22 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.19 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.18 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.11 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.96 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.84 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.81 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.81 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.78 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.76 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.69 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.67 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.64 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.62 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.58 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.56 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.55 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.52 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.47 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.45 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.44 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.43 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.43 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.42 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.42 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.39 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.3 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.25 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.25 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.23 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.22 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.19 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.17 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.14 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.14 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.11 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.05 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.0 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.97 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.92 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.86 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.84 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.74 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.74 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.73 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.69 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.58 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.58 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.57 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.55 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.5 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.47 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.4 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.39 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.35 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.26 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.25 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.23 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.1 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.02 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.01 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.0 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.98 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.89 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.88 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.87 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.86 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.83 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.81 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.77 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.74 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.65 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.63 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.54 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.43 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.4 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.34 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.26 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.19 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.18 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.17 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.14 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.13 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.08 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 93.04 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.04 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.03 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.01 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.0 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.0 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.0 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.99 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.94 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.92 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.84 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.81 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.77 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.76 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.75 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.73 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.72 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.69 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.6 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.52 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.51 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.44 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.44 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.37 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.32 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.3 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.16 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.14 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.07 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.07 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.04 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.97 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 91.91 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.86 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.8 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.78 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.78 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 91.77 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.73 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.59 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.58 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.44 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.43 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.35 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 91.28 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.18 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.12 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.09 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.0 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.93 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 90.9 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.56 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.3 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.28 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 90.06 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.05 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.85 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.73 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.63 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 89.54 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 89.33 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 89.31 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.26 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.14 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.05 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 88.73 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.63 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 88.23 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 88.13 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.94 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.59 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.75 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.74 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.72 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.29 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.28 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.84 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.64 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 85.22 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.13 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 84.8 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 84.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 84.38 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.26 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 84.12 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 84.11 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.85 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 83.16 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.04 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.65 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 82.38 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.25 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 81.41 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 80.53 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 80.01 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.2e-56 Score=467.75 Aligned_cols=216 Identities=23% Similarity=0.356 Sum_probs=187.7
Q ss_pred cCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 493 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 493 ~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+..+|.|+|+||+|+|+++.+++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.|..++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----- 85 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDF----- 85 (255)
T ss_dssp CCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGS-----
T ss_pred CCCCCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccC-----
Confidence 345678999999999987667899999999999999999999999999999999999999999999965543332
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
+...+|++|+||||++++|++||+|||+++.+..
T Consensus 86 ------------------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~---------------------------- 119 (255)
T d2hyda1 86 ------------------LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTA---------------------------- 119 (255)
T ss_dssp ------------------CHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSC----------------------------
T ss_pred ------------------CHHHhhheeeeeeccccCCCCCHHHHHhccCcCC----------------------------
Confidence 2335678899999999999999999999986543
Q ss_pred cCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
+++++.++++.+++..+... ++|+++. ++.|.+|||||||||+|||||+++|+|||||||||+||++++..|
T Consensus 120 ------~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i 193 (255)
T d2hyda1 120 ------TDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESII 193 (255)
T ss_dssp ------CHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHH
T ss_pred ------CHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHH
Confidence 34555666666666544333 4799996 899999999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++.|++ .++|+|+||||++.+++||||++|++|+.
T Consensus 194 ~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~i 230 (255)
T d2hyda1 194 QEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHI 230 (255)
T ss_dssp HHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEE
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999975 68999999999999999999999999975
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-56 Score=463.03 Aligned_cols=211 Identities=22% Similarity=0.298 Sum_probs=181.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+|+||+|+|+++++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.|..++
T Consensus 1 eI~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~---------- 70 (241)
T d2pmka1 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALA---------- 70 (241)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTS----------
T ss_pred CeEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEeccc----------
Confidence 3899999999987677899999999999999999999999999999999999999999999965544333
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+|++|+||||+|++|++||+|||.++....+.+
T Consensus 71 -------------~~~~lr~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~------------------------------ 107 (241)
T d2pmka1 71 -------------DPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVE------------------------------ 107 (241)
T ss_dssp -------------CHHHHHHHEEEECSSCCCTTSBHHHHHCTTSTTCCHH------------------------------
T ss_pred -------------chhhhhceEEEEecccccCCccccccccccCccccHH------------------------------
Confidence 2234577899999999999999999999986544433
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
++.++++.+++...+.. ++|+++. ++.|.+|||||||||+|||||+++|+|||||||||+||+.+++.|++.|+
T Consensus 108 ----~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~ 183 (241)
T d2pmka1 108 ----KVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183 (241)
T ss_dssp ----HHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHH
Confidence 44444444444433333 3788886 88899999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|+||||++.++.||||++|++|+.
T Consensus 184 ~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~I 215 (241)
T d2pmka1 184 KICKGRTVIIIAHRLSTVKNADRIIVMEKGKI 215 (241)
T ss_dssp HHHTTSEEEEECSSGGGGTTSSEEEEEETTEE
T ss_pred HHhCCCEEEEEECCHHHHHhCCEEEEEECCEE
Confidence 6 69999999999999999999999999975
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-55 Score=458.73 Aligned_cols=217 Identities=23% Similarity=0.325 Sum_probs=186.4
Q ss_pred cCCCCcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 493 EKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 493 ~~~~~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
+...|.|+|+||+|+|++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.+..++
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~----- 82 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREY----- 82 (253)
T ss_dssp SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTB-----
T ss_pred CCCceEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchh-----
Confidence 345678999999999987667899999999999999999999999999999999999999999999965543332
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
+...+|+.|+||||+|++|++|+++|+.++....
T Consensus 83 ------------------~~~~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~---------------------------- 116 (253)
T d3b60a1 83 ------------------TLASLRNQVALVSQNVHLFNDTVANNIAYARTEE---------------------------- 116 (253)
T ss_dssp ------------------CHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSC----------------------------
T ss_pred ------------------hhhhhhheEEEEeeccccCCcchhhhhhhcCccc----------------------------
Confidence 2234577799999999999999999999875321
Q ss_pred cCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
.+++++.++++.+++..++.. ++|+++. ++.|.+|||||||||+|||||+++|++||||||||+||+.++..|
T Consensus 117 -----~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i 191 (253)
T d3b60a1 117 -----YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191 (253)
T ss_dssp -----CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHH
T ss_pred -----CCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHH
Confidence 234455566666665544433 4789986 889999999999999999999999999999999999999999999
Q ss_pred HHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 731 YEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++.|++ .++|+|+||||++.++.||+|++|++|+.
T Consensus 192 ~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~I 228 (253)
T d3b60a1 192 QAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGII 228 (253)
T ss_dssp HHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEE
T ss_pred HHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEE
Confidence 999975 69999999999999999999999999975
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.2e-55 Score=455.78 Aligned_cols=212 Identities=23% Similarity=0.371 Sum_probs=183.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+|+|++ ++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.+||.+..++
T Consensus 1 mle~knvsf~Y~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~---------- 69 (242)
T d1mv5a_ 1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI---------- 69 (242)
T ss_dssp CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT----------
T ss_pred CEEEEEEEEECCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccc----------
Confidence 4899999999975 56799999999999999999999999999999999999999999999965544333
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
+...+|++||||||+|++|++||+||+.++... .
T Consensus 70 -------------~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~---------------------------------~ 103 (242)
T d1mv5a_ 70 -------------SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEG---------------------------------D 103 (242)
T ss_dssp -------------SCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTS---------------------------------C
T ss_pred -------------cHHHHHhheEEEccccccCCcchhhheeccccc---------------------------------c
Confidence 234567889999999999999999999886432 1
Q ss_pred CChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 658 PSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.+++++.++++.+++...... ++++++. +++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~ 183 (242)
T d1mv5a_ 104 YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183 (242)
T ss_dssp SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHH
T ss_pred cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHH
Confidence 234556666666666544333 4788886 89999999999999999999999999999999999999999999999997
Q ss_pred h--cCCEEEEEecCcchhhcCCEEEEEccCCCC
Q 040758 736 A--AGITYISVGHRRTLYDFHKRVLRISTVDQN 766 (788)
Q Consensus 736 ~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~ 766 (788)
+ +|+|+|+||||++.++.||||++|++|+..
T Consensus 184 ~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv 216 (242)
T d1mv5a_ 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQIT 216 (242)
T ss_dssp HHHTTSEEEEECCSHHHHHHCSEEEEEETTEEC
T ss_pred HHcCCCEEEEEECCHHHHHhCCEEEEEECCEEE
Confidence 6 699999999999998899999999999754
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8e-55 Score=453.93 Aligned_cols=216 Identities=21% Similarity=0.317 Sum_probs=179.6
Q ss_pred CCCCcEEEeeeEEEcCCC-CccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCC
Q 040758 494 KSQKLLDIEDLTLKTPTS-KATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTS 572 (788)
Q Consensus 494 ~~~~~I~~~nvsf~y~~~-~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~ 572 (788)
..+|.|+|+||+|+||+. +.++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||.|..++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~----- 81 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQY----- 81 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGB-----
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchh-----
Confidence 356789999999999853 34699999999999999999999999999999999999999999999965543332
Q ss_pred ccchhhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhc
Q 040758 573 DVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVG 652 (788)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~ 652 (788)
+.+.+|++|+||||+|++|++||+||+.|+....
T Consensus 82 ------------------~~~~~r~~i~~v~Q~~~lf~~tv~eni~~g~~~~---------------------------- 115 (251)
T d1jj7a_ 82 ------------------EHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQK---------------------------- 115 (251)
T ss_dssp ------------------CHHHHHHHEEEECSSCCCCSSBHHHHHHCSCSSC----------------------------
T ss_pred ------------------hhHHHHHHhhhccccccccCcchhhhhhhhhccc----------------------------
Confidence 2234577899999999999999999999974321
Q ss_pred cCCCCCChHHHHHHHHhccccccccc-CCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHH
Q 040758 653 RKSSKPSTDDLIKALEDVKLGYILPR-LNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHL 730 (788)
Q Consensus 653 ~~~~~~~~~~~~~~l~~~~l~~~~~~-~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i 730 (788)
....+..++.+..++...+.. ++|+++. ++.+.+|||||||||+|||||+++|+|||||||||+||+.++..|
T Consensus 116 -----~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i 190 (251)
T d1jj7a_ 116 -----PTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQV 190 (251)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred -----chHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHH
Confidence 112233333333333333222 3688886 888999999999999999999999999999999999999999999
Q ss_pred HHHHHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 731 YEQIEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 731 ~~~L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
++.|.+ .|+|+|+||||++.+++||||++|++|+.
T Consensus 191 ~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~i 229 (251)
T d1jj7a_ 191 EQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAI 229 (251)
T ss_dssp HHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEE
T ss_pred HHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEE
Confidence 999864 48999999999999999999999999975
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.7e-50 Score=410.72 Aligned_cols=215 Identities=22% Similarity=0.337 Sum_probs=167.0
Q ss_pred cEEEeeeEEEcCCCCc--cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKA--TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~--~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+.+++ .+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.+....+
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~------- 73 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLD------- 73 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC-------
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCC-------
Confidence 4899999999975443 3799999999999999999999999999999999999999999999655433321
Q ss_pred hhhhcccccccchhccccc-CcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhcc
Q 040758 576 SLEVNSQNMNGELTRSMNR-NSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGR 653 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~-~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~ 653 (788)
...... .|++||||||++.||+. ||+||+.++...... ..
T Consensus 74 -------------~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~-------------------------~~ 115 (230)
T d1l2ta_ 74 -------------DDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYR-------------------------GA 115 (230)
T ss_dssp -------------HHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCS-------------------------SC
T ss_pred -------------hhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhcc-------------------------CC
Confidence 011111 23569999999999865 999999875211000 00
Q ss_pred CCCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 654 KSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 654 ~~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.......+++.+.|+.+++.+.. ...++.+|||||||||+|||||+++|++||||||||+||+.+...|++.
T Consensus 116 ~~~~~~~~~~~~~l~~~~L~~~~--------~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~ 187 (230)
T d1l2ta_ 116 MSGEERRKRALECLKMAELEERF--------ANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187 (230)
T ss_dssp CCHHHHHHHHHHHHHHTTCCGGG--------TTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhchhhhh--------hcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHH
Confidence 00000123455667766654210 1234677999999999999999999999999999999999999999998
Q ss_pred HHh----cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 734 IEA----AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~----~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
|.+ .|+|+|+|||+++.+++||||++|++|+.
T Consensus 188 l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~I 223 (230)
T d1l2ta_ 188 LKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223 (230)
T ss_dssp HHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEE
T ss_pred HHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEE
Confidence 864 49999999999998899999999999964
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-49 Score=405.66 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=140.6
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
|+++||+++|+ +..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+.
T Consensus 1 Iev~nv~k~yg--~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~----------- 67 (232)
T d2awna2 1 VQLQNVTKAWG--EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT----------- 67 (232)
T ss_dssp EEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTS-----------
T ss_pred CEEEEEEEEEC--CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCC-----------
Confidence 68999999995 57899999999999999999999999999999999999999999999965443222
Q ss_pred hcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...+++||||||++.||.. |++||+.++...... ...
T Consensus 68 --------------~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~----------------------------~~~ 105 (232)
T d2awna2 68 --------------PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGA----------------------------KKE 105 (232)
T ss_dssp --------------CGGGTCEEEECSSCCC-------------------------------------------------C
T ss_pred --------------chhhceeeeeccccccccchhHHHHHHHHHHHcCC----------------------------CHH
Confidence 1234679999999999965 999999987432110 011
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
...+.+.++++.+++....+ .++.+||||||||++|||||+.+|++||||||||+||+.+...+++.|.+
T Consensus 106 ~~~~~v~~~l~~~~l~~~~~---------~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l 176 (232)
T d2awna2 106 VINQRVNQVAEVLQLAHLLD---------RKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 176 (232)
T ss_dssp HHHHHHHHHHHHC------------------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhh---------CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence 12345778888888765433 34678999999999999999999999999999999999999999887753
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. .++||||++|++|+.
T Consensus 177 ~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 177 HKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp HHHSCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999865 467999999999964
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=9.9e-49 Score=402.37 Aligned_cols=204 Identities=26% Similarity=0.355 Sum_probs=163.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.|..+.
T Consensus 6 ~I~v~nlsk~yg--~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~---------- 73 (239)
T d1v43a3 6 EVKLENLTKRFG--NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYL---------- 73 (239)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS----------
T ss_pred eEEEEEEEEEEC--CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccC----------
Confidence 499999999995 57899999999999999999999999999999999999999999999965443222
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
...+++||||||++.+|. .|++||+.|+........
T Consensus 74 ---------------~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~~~---------------------------- 110 (239)
T d1v43a3 74 ---------------PPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPK---------------------------- 110 (239)
T ss_dssp ---------------CGGGGTEEEEEC------CCCHHHHHHTTCC--CCCH----------------------------
T ss_pred ---------------CcccceEEEEeechhhcccchHHHHHHHHHHHcCCCH----------------------------
Confidence 122456999999999996 599999998743211100
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++|+.++++... +.++.+||||||||++|||||+.+|++||||||||+||+.+...+.+.+++
T Consensus 111 ~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~ 181 (239)
T d1v43a3 111 DEIDKRVRWAAELLQIEELL---------NRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKK 181 (239)
T ss_dssp HHHHHHHHHHHHHTTCGGGT---------TSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhh---------cCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHH
Confidence 01124567788888876543 345778999999999999999999999999999999999999999888754
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++.+ ++||||++|++|+.
T Consensus 182 l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 182 LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 499999999998765 78999999999975
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.9e-49 Score=405.68 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=171.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|++++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+.....
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~--------- 73 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNG--------- 73 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETT---------
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCc---------
Confidence 48999999999755567999999999999999999999999999999999999999999999654432210
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.......|++||||||++.||+. |++|||.|+....... .
T Consensus 74 -----------~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~----------------------------~ 114 (242)
T d1oxxk2 74 -----------KLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMS----------------------------K 114 (242)
T ss_dssp -----------EESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCC----------------------------H
T ss_pred -----------hhhcchhhccceEEeccccccccccHHHHhhhhhHhhcCC----------------------------H
Confidence 11122346779999999999965 9999999863211100 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++.+.++++.++++...+ .++.+||||||||++|||||+++|++||||||||+||+.+...+.+.|++
T Consensus 115 ~~~~~~v~~~l~~~gL~~~~~---------~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~ 185 (242)
T d1oxxk2 115 EEIRKRVEEVAKILDIHHVLN---------HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKE 185 (242)
T ss_dssp HHHHHHHHHHHHHTTCGGGTT---------SCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcChHhhhh---------CChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHH
Confidence 011245778899888865433 34667999999999999999999999999999999999999999887753
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+|||+++.+ ++||||++|++|+.
T Consensus 186 l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~i 219 (242)
T d1oxxk2 186 VQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKL 219 (242)
T ss_dssp HHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhccCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 499999999998754 78999999999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=3.8e-49 Score=402.96 Aligned_cols=200 Identities=27% Similarity=0.399 Sum_probs=167.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
+|+++||+++|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~--------- 68 (229)
T d3d31a2 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS--------- 68 (229)
T ss_dssp CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC---------
T ss_pred CEEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccc---------
Confidence 4899999999952 4899999999999999999999999999999999999999999999655433221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+++||||||++.||.. ||+||+.|+.... .
T Consensus 69 ----------------~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~-------------------------------~ 101 (229)
T d3d31a2 69 ----------------PEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMK-------------------------------K 101 (229)
T ss_dssp ----------------HHHHTCEEECTTCCCCTTSCHHHHHHHHHHHH-------------------------------C
T ss_pred ----------------hhHhcceeeccccccCccccHHHHHHHHHhhc-------------------------------c
Confidence 124579999999999964 9999998752110 0
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+++.++++.+++.+..+ ..+.+|||||||||+|||||+++|++||||||||+||+.+...+.+.+++
T Consensus 102 ~~~~~~~~~~l~~~~l~~~~~---------~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~ 172 (229)
T d3d31a2 102 IKDPKRVLDTARDLKIEHLLD---------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV 172 (229)
T ss_dssp CCCHHHHHHHHHHTTCTTTTT---------SCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhcchhhHh---------CChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHH
Confidence 123467888888888765443 34667999999999999999999999999999999999999999988753
Q ss_pred ----cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+|||+++. ..+||||++|++|+.
T Consensus 173 l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~i 206 (229)
T d3d31a2 173 LHKKNKLTVLHITHDQTEARIMADRIAVVMDGKL 206 (229)
T ss_dssp HHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCE
T ss_pred HHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 59999999999865 567999999999875
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.6e-49 Score=403.86 Aligned_cols=211 Identities=23% Similarity=0.306 Sum_probs=170.7
Q ss_pred cEEEeeeEEEcCCCCc--cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccc
Q 040758 498 LLDIEDLTLKTPTSKA--TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVD 575 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~--~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~ 575 (788)
+|+++||+++|+.+.. .+|+||||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.+....+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~------- 73 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS------- 73 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTC-------
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCC-------
Confidence 4899999999975433 4799999999999999999999999999999999999999999999654432221
Q ss_pred hhhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccC
Q 040758 576 SLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRK 654 (788)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~ 654 (788)
......+|++||||||++.+|+. |++|||.|+.... + .
T Consensus 74 -------------~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~------------~----------------~ 112 (240)
T d3dhwc1 74 -------------ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD------------N----------------T 112 (240)
T ss_dssp -------------HHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT------------T----------------C
T ss_pred -------------hhhhhhhhccccccccccccCCCccHHHHHHHHHHHc------------C----------------C
Confidence 11122345779999999999965 9999998752110 0 0
Q ss_pred CCCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 655 SSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 655 ~~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......+.+.++|+.+++.+..+ ..+.+|||||||||+|||||+.+|++|||||||++||+.+...|++.|
T Consensus 113 ~~~~~~~~v~~~L~~vgL~~~~~---------~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l 183 (240)
T d3dhwc1 113 PKDEVKRRVTELLSLVGLGDKHD---------SYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183 (240)
T ss_dssp CTTHHHHHHHHHHHHHSTTTTTS---------SCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCchhhh---------CChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHH
Confidence 01112356788899988865433 346779999999999999999999999999999999999999999988
Q ss_pred Hh----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 735 EA----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 735 ~~----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
++ .|+|+|+|||+++.+ .+||||++|++|+.
T Consensus 184 ~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~i 219 (240)
T d3dhwc1 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219 (240)
T ss_dssp HHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEE
T ss_pred HHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 53 499999999998765 67999999999964
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.9e-48 Score=400.91 Aligned_cols=210 Identities=25% Similarity=0.328 Sum_probs=169.6
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +.++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+..+..
T Consensus 3 ~i~v~nl~k~yg--~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~--------- 71 (240)
T d1g2912 3 GVRLVDVWKVFG--EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPE--------- 71 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGG---------
T ss_pred cEEEEeEEEEEC--CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccc---------
Confidence 489999999995 567999999999999999999999999999999999999999999999654432221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
........|++||||||++.||+. ||+||+.++...... ..
T Consensus 72 ----------~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~----------------------------~~ 113 (240)
T d1g2912 72 ----------KGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKV----------------------------PR 113 (240)
T ss_dssp ----------GTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTC----------------------------CH
T ss_pred ----------hhhhcccccccceecccchhhcchhhhhHhhhhhHHHcCC----------------------------CH
Confidence 000111235679999999999975 999999885211000 00
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
...++.+.++++.+++.+..+ .++.+||||||||++|||||+.+|++|||||||++||+.+...+++.|++
T Consensus 114 ~e~~~~v~~~l~~~~l~~~~~---------~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~ 184 (240)
T d1g2912 114 QEIDQRVREVAELLGLTELLN---------RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK 184 (240)
T ss_dssp HHHHHHHHHHHHHHTCGGGTT---------CCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHhc---------CChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHH
Confidence 011245778888888765433 34677999999999999999999999999999999999999999988753
Q ss_pred ----cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ----AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
.|.|+|+|||+++.+ ++||||++|++|+.
T Consensus 185 l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~i 218 (240)
T d1g2912 185 LQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218 (240)
T ss_dssp HHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 499999999998765 67999999999864
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-47 Score=402.26 Aligned_cols=194 Identities=23% Similarity=0.292 Sum_probs=160.8
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
..|+|+|++|. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|
T Consensus 37 ~~i~~~~~~~~----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g--------------- 97 (281)
T d1r0wa_ 37 NNVSFSHLCLV----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG--------------- 97 (281)
T ss_dssp ---CHHHHHHT----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---------------
T ss_pred CcEEEEEcCCC----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---------------
Confidence 35677777653 45899999999999999999999999999999999999999999998731
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+|+||||++++|++||+|||.|+...
T Consensus 98 ---------------------~i~~v~Q~~~l~~~tv~eni~~~~~~--------------------------------- 123 (281)
T d1r0wa_ 98 ---------------------RVSFCSQFSWIMPGTIKENIIFGVSY--------------------------------- 123 (281)
T ss_dssp ---------------------CEEEECSSCCCCSEEHHHHHTTTSCC---------------------------------
T ss_pred ---------------------EEEEEeccccccCceeeccccccccc---------------------------------
Confidence 38999999999999999999987432
Q ss_pred CCChHHHHHHHHhcccccccc-cCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILP-RLNSLDTT-YEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQI 734 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~-~~~g~~t~-~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L 734 (788)
......++++.+++..... .++++++. ++.+.+|||||||||+|||||+++|+|||||||||+||+.++..+++.+
T Consensus 124 --~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~ 201 (281)
T d1r0wa_ 124 --DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 201 (281)
T ss_dssp --CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHC
T ss_pred --cchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHH
Confidence 1223334444444433222 23677775 7889999999999999999999999999999999999999999998764
Q ss_pred -Hh--cCCEEEEEecCcchhhcCCEEEEEccCCC
Q 040758 735 -EA--AGITYISVGHRRTLYDFHKRVLRISTVDQ 765 (788)
Q Consensus 735 -~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~ 765 (788)
.. .++|+|+||||++.++.||||++|++|+.
T Consensus 202 ~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i 235 (281)
T d1r0wa_ 202 VCKLMANKTRILVTSKMEHLRKADKILILHQGSS 235 (281)
T ss_dssp CCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEE
T ss_pred HHHhhCCCEEEEEechHHHHHhCCEEEEEECCEE
Confidence 32 58999999999999999999999999964
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-46 Score=392.25 Aligned_cols=221 Identities=20% Similarity=0.244 Sum_probs=168.7
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+......++.
T Consensus 2 ~Lev~nl~k~yg--~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~----- 74 (258)
T d1b0ua_ 2 KLHVIDLHKRYG--GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG----- 74 (258)
T ss_dssp CEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTS-----
T ss_pred eEEEEEEEEEEC--CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccch-----
Confidence 489999999995 5679999999999999999999999999999999999999999999996655433210000
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.............|++||||||+|.+|+ .|+.||+.++..... + ...
T Consensus 75 -----~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~-----------~----------------~~~ 122 (258)
T d1b0ua_ 75 -----QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL-----------G----------------LSK 122 (258)
T ss_dssp -----SEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT-----------C----------------CCH
T ss_pred -----hcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc-----------C----------------CCH
Confidence 0000000111234677999999999996 499999986411000 0 000
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
....+.+.++++.+++.... ....+.+||||||||++|||||+.+|++|||||||++||+.+...|++.|++
T Consensus 123 ~~~~~~~~~~l~~~~l~~~~--------~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~ 194 (258)
T d1b0ua_ 123 HDARERALKYLAKVGIDERA--------QGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ 194 (258)
T ss_dssp HHHHHHHHHHHHHTTCCHHH--------HTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCchhh--------hccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhh
Confidence 01124567788888774321 1223567999999999999999999999999999999999999999988764
Q ss_pred ---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+|+|+|+|||+++.+ .+||||++|++|+.
T Consensus 195 l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 195 LAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp HHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred hcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 699999999998765 67999999999964
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=6.2e-46 Score=384.11 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=162.9
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.....
T Consensus 6 ~Lev~~l~k~yg--~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~--------- 74 (240)
T d1ji0a_ 6 VLEVQSLHVYYG--AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKP--------- 74 (240)
T ss_dssp EEEEEEEEEEET--TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred EEEEeeEEEEEC--CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEeccccccccc---------
Confidence 699999999995 567999999999999999999999999999999999999999999999654432211
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
.....|.+|+|+||++.+|+. |++||+.++...... .
T Consensus 75 -------------~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~-----------------------------~ 112 (240)
T d1ji0a_ 75 -------------AHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD-----------------------------K 112 (240)
T ss_dssp -------------HHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC-----------------------------S
T ss_pred -------------HHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC-----------------------------H
Confidence 111224569999999999975 999999875322100 0
Q ss_pred CCChHHHHHHHHhc-ccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 657 KPSTDDLIKALEDV-KLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 657 ~~~~~~~~~~l~~~-~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
....+++.++++.+ ++... ....+.+||||||||++|||||+.+|++|||||||++||+.+..++++.++
T Consensus 113 ~~~~~~~~~~~~~~~~l~~~---------~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~ 183 (240)
T d1ji0a_ 113 EGIKRDLEWIFSLFPRLKER---------LKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQ 183 (240)
T ss_dssp SHHHHHHHHHHHHCHHHHTT---------TTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhChHHH---------HhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHH
Confidence 00112333444433 23322 234567899999999999999999999999999999999999999998876
Q ss_pred h---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|+|||+++. .++||||++|++|+.
T Consensus 184 ~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~i 217 (240)
T d1ji0a_ 184 KINQEGTTILLVEQNALGALKVAHYGYVLETGQI 217 (240)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 69999999999865 578999999999975
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=6.1e-46 Score=387.72 Aligned_cols=217 Identities=19% Similarity=0.330 Sum_probs=167.2
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++|+ +.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+....+
T Consensus 4 iL~v~nlsk~yg--~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~--------- 72 (254)
T d1g6ha_ 4 ILRTENIVKYFG--EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKE--------- 72 (254)
T ss_dssp EEEEEEEEEEET--TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCC---------
T ss_pred eEEEEEEEEEEC--CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchh---------
Confidence 699999999995 567999999999999999999999999999999999999999999999654432221
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+.+..+.+|+++||++.+|. .|+.||+.++........ +- ........
T Consensus 73 -------------~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~------------~~------~~~~~~~~ 121 (254)
T d1g6ha_ 73 -------------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP------------LN------SLFYKKWI 121 (254)
T ss_dssp -------------HHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCH------------HH------HHHHCSSC
T ss_pred -------------HHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccc------------hh------hhhhhccc
Confidence 11123456999999999886 599999988643211000 00 00000111
Q ss_pred CCCh---HHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHH
Q 040758 657 KPST---DDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQ 733 (788)
Q Consensus 657 ~~~~---~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~ 733 (788)
.... +++.+.++.+++.... .....+|||||||||+|||||+.+|++|||||||++||+.+...+++.
T Consensus 122 ~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~ 192 (254)
T d1g6ha_ 122 PKEEEMVEKAFKILEFLKLSHLY---------DRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNH 192 (254)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGT---------TSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhcCcchhc---------cCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHH
Confidence 1111 3355566666655432 234667999999999999999999999999999999999999999988
Q ss_pred HHh---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 734 IEA---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 734 L~~---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
+++ +|+|+|+|||+++. .++||||++|++|+.
T Consensus 193 i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~i 228 (254)
T d1g6ha_ 193 VLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQI 228 (254)
T ss_dssp HHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEE
T ss_pred HHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEE
Confidence 753 69999999999865 578999999999975
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.7e-45 Score=378.63 Aligned_cols=206 Identities=24% Similarity=0.307 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccch
Q 040758 497 KLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDS 576 (788)
Q Consensus 497 ~~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~ 576 (788)
|.|+++||+++|+ ++++|+|+||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.|..+.
T Consensus 1 gaI~v~nl~k~yg--~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~--------- 69 (238)
T d1vpla_ 1 GAVVVKDLRKRIG--KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE--------- 69 (238)
T ss_dssp CCEEEEEEEEEET--TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC---------
T ss_pred CCEEEEeEEEEEC--CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC---------
Confidence 4599999999995 57899999999999999999999999999999999999999999999965432111
Q ss_pred hhhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCC
Q 040758 577 LEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKS 655 (788)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~ 655 (788)
....++.+|||||++.+|.. |++||+.|...-. + ..
T Consensus 70 ---------------~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~------------~----------------~~ 106 (238)
T d1vpla_ 70 ---------------PHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY------------A----------------SS 106 (238)
T ss_dssp ---------------HHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH------------C----------------CC
T ss_pred ---------------hHHHHhhEeEeeeccccCCCccHHHHHHHHHHhc------------C----------------CC
Confidence 11335679999999988865 9999997631100 0 00
Q ss_pred CCCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 656 SKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 656 ~~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
.....+.+.+.++.+++.... .++..+||||||||++|||||+++|++|||||||++||+.+...+.+.++
T Consensus 107 ~~~~~~~~~~~l~~~~l~~~~---------~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~ 177 (238)
T d1vpla_ 107 SSEIEEMVERATEIAGLGEKI---------KDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK 177 (238)
T ss_dssp HHHHHHHHHHHHHHHCCGGGG---------GSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHH---------hhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 000123455666666665433 33466799999999999999999999999999999999999999988875
Q ss_pred h---cCCEEEEEecCcchh-hcCCEEEEEccCCC
Q 040758 736 A---AGITYISVGHRRTLY-DFHKRVLRISTVDQ 765 (788)
Q Consensus 736 ~---~g~TvI~IaHr~~~~-~~~D~Ilvl~~g~~ 765 (788)
+ +|+|+|++||+++.+ .+||||++|++|+.
T Consensus 178 ~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~i 211 (238)
T d1vpla_ 178 QASQEGLTILVSSHNMLEVEFLCDRIALIHNGTI 211 (238)
T ss_dssp HHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEE
T ss_pred HHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4 699999999998665 68999999999975
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.6e-44 Score=370.41 Aligned_cols=197 Identities=23% Similarity=0.332 Sum_probs=159.2
Q ss_pred EEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchhh
Q 040758 499 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLE 578 (788)
Q Consensus 499 I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~~ 578 (788)
+++ ++.++|+ +. .+ |+||+++ ||+++|+||||||||||+|+|+|+++|++|+|.++|+|..++
T Consensus 3 l~v-~~~k~~g--~~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~----------- 65 (240)
T d2onka1 3 LKV-RAEKRLG--NF-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL----------- 65 (240)
T ss_dssp EEE-EEEEEET--TE-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS-----------
T ss_pred EEE-EEEEEEC--CE-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcC-----------
Confidence 556 5678884 22 24 8999995 689999999999999999999999999999999965543322
Q ss_pred hcccccccchhcccccCcceEEEEccccccCC-CCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCCC
Q 040758 579 VNSQNMNGELTRSMNRNSRGVFFLPQRPYMVL-GSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSSK 657 (788)
Q Consensus 579 ~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~~ 657 (788)
...+++||||||++.+|+ .||+|||.|+....+..
T Consensus 66 --------------~~~~r~ig~v~Q~~~l~~~ltV~enl~~~l~~~~~~------------------------------ 101 (240)
T d2onka1 66 --------------PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERV------------------------------ 101 (240)
T ss_dssp --------------CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSCHH------------------------------
T ss_pred --------------CHHHcCceeeccchhhcccchhhHhhhhhhcccCHH------------------------------
Confidence 123567999999999996 59999999974211100
Q ss_pred CChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh-
Q 040758 658 PSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA- 736 (788)
Q Consensus 658 ~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~- 736 (788)
..++.+.++++.+++.+..+ ..+.+|||||||||+|||||+++|++||||||||+||+.+...+.+.+++
T Consensus 102 ~~~~~v~~~l~~~gl~~~~~---------~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l 172 (240)
T d2onka1 102 ERDRRVREMAEKLGIAHLLD---------RKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFV 172 (240)
T ss_dssp HHHHHHHHHHHTTTCTTTTT---------CCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhhhh---------CChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHH
Confidence 01245778888888765443 34677999999999999999999999999999999999999999998753
Q ss_pred ---cCCEEEEEecCcch-hhcCCEEEEEccCCC
Q 040758 737 ---AGITYISVGHRRTL-YDFHKRVLRISTVDQ 765 (788)
Q Consensus 737 ---~g~TvI~IaHr~~~-~~~~D~Ilvl~~g~~ 765 (788)
.|+|+|+|||+++. .++||||++|++|+.
T Consensus 173 ~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~i 205 (240)
T d2onka1 173 QREFDVPILHVTHDLIEAAMLADEVAVMLNGRI 205 (240)
T ss_dssp HHHHTCCEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred HHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 49999999999865 567999999999974
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-40 Score=336.20 Aligned_cols=191 Identities=23% Similarity=0.348 Sum_probs=150.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+|+|+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ++.
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~---~i~--------- 66 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV---PIT--------- 66 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTE---EGG---------
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCE---ehh---------
Confidence 489999999994 47999999999999999999999999999999999999999999999543 331
Q ss_pred hhcccccccchhcccccCcceEEEEccccccCCC-CHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLG-SLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
..+.+++|+||++.++.. |+.||+.+... + .+.
T Consensus 67 ----------------~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~----------------------------~--~~~ 100 (200)
T d1sgwa_ 67 ----------------KVKGKIFFLPEEIIVPRKISVEDYLKAVAS----------------------------L--YGV 100 (200)
T ss_dssp ----------------GGGGGEEEECSSCCCCTTSBHHHHHHHHHH----------------------------H--TTC
T ss_pred ----------------HhcCcEEEEeecccCCCCcCHHHHHHHHHH----------------------------h--cCC
Confidence 234569999999988864 88888754110 0 011
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHh
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEA 736 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~~p~iLiLDEpTSaLD~~se~~i~~~L~~ 736 (788)
..+.+++.++++.+++.+. .++..+||||||||++|||||+++|+++||||||++||+++++.+++.+.+
T Consensus 101 ~~~~~~~~~~l~~~~~~~~----------~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~ 170 (200)
T d1sgwa_ 101 KVNKNEIMDALESVEVLDL----------KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILE 170 (200)
T ss_dssp CCCHHHHHHHHHHTTCCCT----------TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCccc----------ccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHH
Confidence 2345677788887655322 123456999999999999999999999999999999999999999887754
Q ss_pred ----cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 737 ----AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 737 ----~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
.+.++|..+|++ .+||++.+|++
T Consensus 171 ~~~~~~~~ii~~~~~l---~~~D~~~~l~~ 197 (200)
T d1sgwa_ 171 ILKEKGIVIISSREEL---SYCDVNENLHK 197 (200)
T ss_dssp HHHHHSEEEEEESSCC---TTSSEEEEGGG
T ss_pred HHhCCCEEEEEEechh---hhcchhhheee
Confidence 344444444443 58999999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.7e-40 Score=337.29 Aligned_cols=197 Identities=25% Similarity=0.311 Sum_probs=155.3
Q ss_pred cEEEeeeEEEcCCCCccceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEeeccCcccccCCCccchh
Q 040758 498 LLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSL 577 (788)
Q Consensus 498 ~I~~~nvsf~y~~~~~~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~~~~~~~i~~~~~~~~~~ 577 (788)
.|+++||+++| .|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|.+....
T Consensus 3 il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~---------- 65 (231)
T d1l7vc_ 3 VMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAW---------- 65 (231)
T ss_dssp EEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGS----------
T ss_pred EEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcC----------
Confidence 48999997654 699999999999999999999999999999999986 5899999965432221
Q ss_pred hhcccccccchhcccccCcceEEEEcccccc-CCCCHHHHhcCCCCccccchhhHHHHhcCCccchhhhhhhhhhccCCC
Q 040758 578 EVNSQNMNGELTRSMNRNSRGVFFLPQRPYM-VLGSLRQQLIYPTWTEEVKPASDAAKSAGLVPFLTSAQKLENVGRKSS 656 (788)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~eNi~~~~~~~~~~~~~~aa~~~~~~~~i~~~~~~~~~~~~~~ 656 (788)
+...++...+|++|+... |..++.+++.++...
T Consensus 66 -------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--------------------------------- 99 (231)
T d1l7vc_ 66 -------------SATKLALHRAYLSQQQTPPFATPVWHYLTLHQHD--------------------------------- 99 (231)
T ss_dssp -------------CHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSC---------------------------------
T ss_pred -------------CHHHHHhhceeeeccccCCccccHHHHhhhccch---------------------------------
Confidence 111234568999998764 456888887653321
Q ss_pred CCChHHHHHHHHhcccccccccCCCccccccCCCCCChhHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHHHHHH
Q 040758 657 KPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLS-------KPQIVLLDESTSALDEANEAH 729 (788)
Q Consensus 657 ~~~~~~~~~~l~~~~l~~~~~~~~g~~t~~e~g~~LSGGQrQRiaIARALl~-------~p~iLiLDEpTSaLD~~se~~ 729 (788)
+...+.+.++++.+++.... +....+||||||||++|||||++ +|++|||||||++||+.++..
T Consensus 100 ~~~~~~~~~~~~~~~l~~~~---------~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~ 170 (231)
T d1l7vc_ 100 KTRTELLNDVAGALALDDKL---------GRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSA 170 (231)
T ss_dssp TTCHHHHHHHHHHTTCTTTT---------TSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHhHh---------CcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHH
Confidence 11234456667776665432 34466799999999999999997 779999999999999999999
Q ss_pred HHHHHH---hcCCEEEEEecCcc-hhhcCCEEEEEccCCCC
Q 040758 730 LYEQIE---AAGITYISVGHRRT-LYDFHKRVLRISTVDQN 766 (788)
Q Consensus 730 i~~~L~---~~g~TvI~IaHr~~-~~~~~D~Ilvl~~g~~~ 766 (788)
+.+.++ +.|+|+|++||+++ +.++||||++|++|+..
T Consensus 171 i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv 211 (231)
T d1l7vc_ 171 LDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKML 211 (231)
T ss_dssp HHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEEC
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEE
Confidence 988775 37999999999986 56899999999999854
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.90 E-value=5.6e-21 Score=199.95 Aligned_cols=305 Identities=11% Similarity=0.084 Sum_probs=215.0
Q ss_pred HHHHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHH
Q 040758 132 TLFRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALAD-KDQEQFAKQLLYYLGAFAGGIPF 210 (788)
Q Consensus 132 ~~~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~-~~~~~~~~~ll~~~~~~~~~~~~ 210 (788)
+.+|++|++++|||+ .+++.+++.++.+++.+..|++++.++|.+.. ++...+....+.++++.+ +
T Consensus 2 k~~krl~~~~~~~k~---------~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~l~~~~~~~~~~~~----~ 68 (319)
T d3b60a2 2 QTFRRLWPTIAPFKA---------GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI----L 68 (319)
T ss_dssp HHHHHHHHHHGGGHH---------HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHHHHHSHHHHHHHHH----H
T ss_pred hHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH----H
Confidence 578999999999987 36666667777888888999999999997543 443332211111111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCC-c----hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 211 FVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDN-P----DQRIVDDLSSFTGTALSFSLTLFNAAVD 283 (788)
Q Consensus 211 ~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~-~----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i~ 283 (788)
..+..++...+. .. ....+.+.+|.+.|.|+.+.+. +++ + .+|+++|++.+..........++..++.
T Consensus 69 ~~i~~~~~~~~~----~~-~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 143 (319)
T d3b60a2 69 RGITSYISSYCI----SW-VSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGAS 143 (319)
T ss_dssp HHHHHHHHHHHH----HH-HHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhh----hh-hhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhh
Confidence 122222222111 11 2233567899999999988776 222 2 3799999999998777777778888888
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHHH
Q 040758 284 LISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLLQ 363 (788)
Q Consensus 284 ~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~~ 363 (788)
+++..++++.++|++++++++..++..++..++.++..+.....++..++..+.+.|..+|+++||+|+.|+.+.+++.+
T Consensus 144 ~i~~~~~~~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~ 223 (319)
T d3b60a2 144 IIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 223 (319)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHH
T ss_pred hhhHHHHHHhhhccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhh
Confidence 88888889999999999999999999999999999999888888888899999999999999999999999998865555
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 364 RFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFS 443 (788)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~~ 443 (788)
..++..+...+.................+..++.+.++++++..|.+|+|.+.+++.+...+..++..+...+..+....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~ 303 (319)
T d3b60a2 224 VSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGM 303 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444444333322222222222222333333444455667789999999998888888888888887777777777777
Q ss_pred HHHHHhHhhhh
Q 040758 444 AVIDRLGEFDD 454 (788)
Q Consensus 444 ~~~~rl~~~~~ 454 (788)
...+|+.++.+
T Consensus 304 ~s~~Ri~elld 314 (319)
T d3b60a2 304 AACQTLFAILD 314 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 78888876543
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.89 E-value=5.4e-21 Score=200.74 Aligned_cols=306 Identities=14% Similarity=0.131 Sum_probs=213.5
Q ss_pred HHHHHHHhcccccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---HHHHHHHHHHHHHHH-HHHH
Q 040758 134 FRRFWKVAAPYWFSDDKVQARLQLAAVFALTFATTGISVGFNFLGRDFYNALADKDQ---EQFAKQLLYYLGAFA-GGIP 209 (788)
Q Consensus 134 ~~~l~~~~~p~~~~~~~~~~~~~l~~~~~l~~~~~~l~~~~~~l~~~iid~l~~~~~---~~~~~~ll~~~~~~~-~~~~ 209 (788)
+|++++|++|||+ .++..++++++.+++.+..|++++.++|.+...+. ..........+++.+ +..+
T Consensus 2 lKrl~~~~k~~k~---------~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 72 (323)
T d2hyda2 2 IKRYLQFVKPYKY---------RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72 (323)
T ss_dssp HHHHHHHHGGGHH---------HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 6889999999987 36666777777888889999999999998755331 111111111111111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCC--CCCc-----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 210 FFVLRDYARETLALRWRSWMTKYYMERYLKDQTFYKIQSQSI--IDNP-----DQRIVDDLSSFTGTALSFSLTLFNAAV 282 (788)
Q Consensus 210 ~~~~~~~~~~~l~~~~~~~l~~~~~~~~Lr~~~f~~l~~~~~--~~~~-----~~Ri~~Dv~~v~~~~~~~~~~ii~~~i 282 (788)
+..+..++. ..+..+. ...+...+|.++|+|+.+++. +++. .+|+++|++.+.+........++..++
T Consensus 73 ~~~~~~~~~----~~~~~~~-~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~ 147 (323)
T d2hyda2 73 VRPPIEFIR----QYLAQWT-SNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCI 147 (323)
T ss_dssp THHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHH----HHHHHHH-HHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcchhhh
Confidence 111111111 1111222 223567889999999988775 4432 279999999998866555556677777
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHHHHHHHhHHHHHhccCchHHHHHHH
Q 040758 283 DLISFSNILYGIYPPLFVVLLVYSIGGTAISIYLGKGLVTLNFLQEKKEADFRYGLVRVRENAESIAFYAGEDNEMQLLL 362 (788)
Q Consensus 283 ~~i~~~~il~~~~~~L~l~~ll~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~Ik~f~~e~~e~~~~~ 362 (788)
.++...++++.++|++++++++..++..++..++.++..+..+..++..+++.+.+.|..+|+++||+|+.|+.+.+++.
T Consensus 148 ~~i~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~ 227 (323)
T d2hyda2 148 TIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFD 227 (323)
T ss_dssp HHHHHHHHHHHHCTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhh
Confidence 77777788889999999999998899999999999999998888888899999999999999999999999999887665
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040758 363 QRFRSAFENLTRLLISSRNLEFFTSGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAF 442 (788)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~it~G~l~~~~~~~~~~~~~l~~~~~~~~~l~~~ 442 (788)
+..++..+...+.................+..++.++++++++..|.+|+|.+..++.++..+..++..+...+..+...
T Consensus 228 ~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~ 307 (323)
T d2hyda2 228 KKNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQS 307 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555544443333322333333333344444555566778889999999999888888888888877777777777777
Q ss_pred HHHHHHhHhhh
Q 040758 443 SAVIDRLGEFD 453 (788)
Q Consensus 443 ~~~~~rl~~~~ 453 (788)
....+|+.++.
T Consensus 308 ~~s~~Ri~elL 318 (323)
T d2hyda2 308 FASMDRVFQLI 318 (323)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888887653
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.69 E-value=1.5e-18 Score=168.36 Aligned_cols=73 Identities=8% Similarity=0.064 Sum_probs=60.9
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCC--CHHHHHHHHHHHHhcCCEEEEEecCcchhhcCCEEEEEccCC
Q 040758 692 LSLGEQQRLAFARLLLSKPQIVLLDESTSAL--DEANEAHLYEQIEAAGITYISVGHRRTLYDFHKRVLRISTVD 764 (788)
Q Consensus 692 LSGGQrQRiaIARALl~~p~iLiLDEpTSaL--D~~se~~i~~~L~~~g~TvI~IaHr~~~~~~~D~Ilvl~~g~ 764 (788)
+|+|++||.++++++.++|++|++|||+... |......+.+.++..+.|+|+++|+.+....+|++..+++|+
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~ 156 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAV 156 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCE
Confidence 8999999999999999999999999986553 445556666777777999999999988777888877776664
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=1.4e-09 Score=113.47 Aligned_cols=74 Identities=22% Similarity=0.323 Sum_probs=63.6
Q ss_pred CCCCChhHHHHHHHHHH----HccCCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEcc
Q 040758 689 SSVLSLGEQQRLAFARL----LLSKPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRIST 762 (788)
Q Consensus 689 g~~LSGGQrQRiaIARA----Ll~~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~ 762 (788)
...+|+|||+.++++.. ...+|+++++|||-++|+|.....+.+.|++ .+.=+|++||++.++..+|+++.+..
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~ 296 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTM 296 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEE
T ss_pred hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEE
Confidence 35699999999887765 3457899999999999999999999999975 57789999999999999999977543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=3.4e-08 Score=106.74 Aligned_cols=72 Identities=24% Similarity=0.364 Sum_probs=61.7
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHh---cCCEEEEEecCcchhhcCCEEEEEc
Q 040758 690 SVLSLGEQQRLAFARLL----LSKPQIVLLDESTSALDEANEAHLYEQIEA---AGITYISVGHRRTLYDFHKRVLRIS 761 (788)
Q Consensus 690 ~~LSGGQrQRiaIARAL----l~~p~iLiLDEpTSaLD~~se~~i~~~L~~---~g~TvI~IaHr~~~~~~~D~Ilvl~ 761 (788)
..||||||.++++|-.+ +.++|+++||||+++||+.....+.+.|++ .+.-+|+|||++.++..||+++.+.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V~ 409 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 409 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEEE
Confidence 56899999998877543 568899999999999999999999999865 3456999999999999999988664
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.71 E-value=0.0002 Score=70.77 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=35.7
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHH----HHHHHhcCCEEEEEecCcchhh
Q 040758 707 LSKPQIVLLDESTSALDEANEAHL----YEQIEAAGITYISVGHRRTLYD 752 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i----~~~L~~~g~TvI~IaHr~~~~~ 752 (788)
..+..++|+||..++=|+..-..+ .+.|.+.+.+++++||..++..
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 456679999999999999877554 4455567889999999876644
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.50 E-value=0.00034 Score=69.52 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=32.5
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHH----HHHh-cCCEEEEEecCcchh
Q 040758 707 LSKPQIVLLDESTSALDEANEAHLYE----QIEA-AGITYISVGHRRTLY 751 (788)
Q Consensus 707 l~~p~iLiLDEpTSaLD~~se~~i~~----~L~~-~g~TvI~IaHr~~~~ 751 (788)
..+..++|+||+.++=|+..-..+.. .+.. .+..+|++||..++.
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 45567999999999999887765543 3333 466889999976543
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.19 E-value=0.13 Score=50.52 Aligned_cols=72 Identities=6% Similarity=-0.144 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhhhhhHhHHHHHHHHHHHhHH-HHHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040758 307 IGGTAISIYLGKGLVTLNFLQEKKEADFRYGL-VRVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLISS 379 (788)
Q Consensus 307 ~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~~~ 379 (788)
++.+.+...+.....+......+...+..... ....+.+..++....-..| +.+.+++++..++..+...+.
T Consensus 163 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e-~~~~~~~~~~~~~~~~~~~~~ 235 (319)
T d3b60a2 163 VVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ-EVETKRFDKVSNKMRLQGMKM 235 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhcc-chhhhhhhhhhhhhhHHHHHH
Confidence 33344444444444444333333333333322 3344455555655555555 345566666666655544443
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.00014 Score=69.01 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=24.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
|+.+.|+||||||||||.+.|..-++.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 899999999999999999999877654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.94 E-value=0.00022 Score=70.21 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+|++.+++|+||+|||||+|.|.+-.....|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 58999999999999999999999988877888864
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00015 Score=67.04 Aligned_cols=33 Identities=24% Similarity=0.227 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
+++|+|++|||||||++-|.+.+....-++.+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~ 36 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI 36 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 689999999999999999997666544445443
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.83 E-value=0.00028 Score=65.44 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.|+.+.|+||+||||||+.+.|+.-+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999999865
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.79 E-value=0.00026 Score=65.55 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=24.1
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|.+|.|+|++||||||+.+.|+.-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999999543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.77 E-value=3.6e-05 Score=72.79 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=28.5
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.+++.++++.+| +++|+|||||||||++.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 367888888876 888999999999999999863
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.72 E-value=0.13 Score=50.52 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=18.6
Q ss_pred HHHHhHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 040758 340 RVRENAESIAFYAGEDNEMQLLLQRFRSAFENLTRLLI 377 (788)
Q Consensus 340 ~~~~~i~~Ik~f~~e~~e~~~~~~~~~~~~~~~~~~~~ 377 (788)
...|.++.++.-..-..|. .+.++|++..++..+...
T Consensus 202 ~~~e~~~~~~~Ik~~~~e~-~~~~~~~~~~~~~~~~~~ 238 (323)
T d2hyda2 202 FLHERVQGISVVKSFAIED-NEAKNFDKKNTNFLTRAL 238 (323)
T ss_dssp HHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCchhhhHhhhc-cchhhhhcccccccchhh
Confidence 3444555555555555543 344555555555544433
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.69 E-value=0.0024 Score=66.20 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=32.4
Q ss_pred eEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 520 SLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 520 sl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
..-++.|..+.|.|++||||||+++.|+++.+|+.=-|.+
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 3445677889999999999999999999999886544443
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.65 E-value=0.00018 Score=66.90 Aligned_cols=33 Identities=24% Similarity=0.477 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+.+.|+||+|+|||||++.+++.+....+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~ 34 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDG 34 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999999877766654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.56 E-value=0.00024 Score=70.18 Aligned_cols=35 Identities=29% Similarity=0.366 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+|++.+++|+||+|||||+|.|.+-.....|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 48899999999999999999999988877888874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.55 E-value=0.00043 Score=64.17 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+|+||+|||||||.+.|+.-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.52 E-value=0.003 Score=61.74 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=26.7
Q ss_pred ceeeeeEE--EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 515 LVRDLSLV--INEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 515 vL~~isl~--i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
-|+.+ +. +++|..+.|.|++|||||||..-++-
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35554 34 88999999999999999999876654
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.52 E-value=0.014 Score=57.89 Aligned_cols=30 Identities=20% Similarity=0.333 Sum_probs=24.8
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
.++.++ .||+.+.|.|++|+|||||+--|+
T Consensus 21 ~li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 21 YVLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EEETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 466663 469999999999999999987665
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.51 E-value=0.00061 Score=62.95 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=24.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++|-.++|.||+||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987553
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00054 Score=63.25 Aligned_cols=27 Identities=30% Similarity=0.489 Sum_probs=24.3
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.+.++.|.||+||||||+.+.|+.-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999999755
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.42 E-value=0.00042 Score=64.35 Aligned_cols=33 Identities=21% Similarity=0.172 Sum_probs=25.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++++|+|++|||||||++-|.+.+.....++-+
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v 34 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT 34 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence 468999999999999999888776655444443
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00064 Score=65.99 Aligned_cols=27 Identities=33% Similarity=0.526 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..+.|+||||||||||.+.|..-++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999998876654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0008 Score=60.85 Aligned_cols=24 Identities=29% Similarity=0.666 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+.|+||+||||||+.++|+.-+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998754
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.27 E-value=0.00084 Score=61.83 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.++|.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999774
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.26 E-value=0.00064 Score=63.17 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=26.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
+++++|.|++||||||+.+.|+..+......+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~ 33 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYK 33 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 368999999999999999999876655444443
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.00061 Score=64.22 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|.+|.|+|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.19 E-value=0.0008 Score=61.63 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
..+.|+||+||||||+.+.|+..+. +.+.+
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~ 32 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYI 32 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEE
Confidence 4689999999999999999998664 34544
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.18 E-value=0.001 Score=62.49 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|||.|++|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 589999999999999999986544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.17 E-value=0.0011 Score=60.05 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=22.6
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+.+.|.|++|||||||.+.|..- ..|...+
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~ 32 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNI 32 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEe
Confidence 46889999999999999977542 2355555
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.11 E-value=0.0011 Score=61.02 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|+||+||||||+.+.|+.-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997644
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.0014 Score=62.12 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|++|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.84 E-value=0.0018 Score=60.49 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.81 E-value=0.0018 Score=61.36 Aligned_cols=22 Identities=36% Similarity=0.851 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+||||||||||.+.|+.-+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987544
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0018 Score=61.20 Aligned_cols=24 Identities=17% Similarity=0.447 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..+.|+||||+|||||++.|..-+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999888543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.78 E-value=0.0023 Score=60.37 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=24.0
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|-.+.|+||.||||||+.+.|+--|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999543
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.76 E-value=0.0023 Score=67.58 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=22.7
Q ss_pred EEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 521 LVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 521 l~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++.++...+|+|||||||||++.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444556689999999999999999984
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.0024 Score=59.09 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+|+|+|++|+|||||++.|+|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.67 E-value=0.0067 Score=64.60 Aligned_cols=30 Identities=30% Similarity=0.627 Sum_probs=24.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.|||+|++|+|||||+|.|.|...-..|.+
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~ 87 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAA 87 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCccC
Confidence 389999999999999999999765444443
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.64 E-value=0.0025 Score=60.29 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++.|+||.||||||+.+.|+.-|
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.62 E-value=0.0022 Score=59.35 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|||++|||||||++.|.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.58 E-value=0.0026 Score=61.19 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.56 E-value=0.0028 Score=57.73 Aligned_cols=84 Identities=13% Similarity=0.000 Sum_probs=45.2
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEec-CCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcchhhcCCEEEEEccCCCCCCC
Q 040758 693 SLGEQQRLAFARLLLSKPQIVLLDE-STSALDEANEAHLYEQIEA--AGITYISVGHRRTLYDFHKRVLRISTVDQNSSQ 769 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~iLiLDE-pTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~~~~~~D~Ilvl~~g~~~~~~ 769 (788)
...+...+..+...+.++++++++= +++.--......+.+.+.. .++.+|++....++...... + ...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~---~------~~~ 134 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG---M------SEV 134 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE---E------EEE
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH---H------HHh
Confidence 3445556666777788888766542 2222111112222233333 36777777776665432211 1 123
Q ss_pred CCeEEEecCccccccc
Q 040758 770 SNWKLEFIDQESLYNL 785 (788)
Q Consensus 770 ~~~~~~~~~~~~~~~~ 785 (788)
.++.+-.+++++-+|+
T Consensus 135 ~~~~~~~iSAk~~~gi 150 (161)
T d2gj8a1 135 NGHALIRLSARTGEGV 150 (161)
T ss_dssp TTEEEEECCTTTCTTH
T ss_pred CCCcEEEEECCCCCCH
Confidence 5677788888877765
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.55 E-value=0.0026 Score=60.48 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+||||||||||.+.|+..+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.52 E-value=0.0019 Score=60.57 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
|||+|++++|||||++.|.|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0029 Score=56.93 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999974
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.45 E-value=0.0029 Score=58.72 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.+.|+|++||||||+.++|+.-
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45779999999999999999754
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.44 E-value=0.003 Score=58.29 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|+|++||||||+.++|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998654
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.43 E-value=0.0029 Score=60.14 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999873
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.43 E-value=0.0031 Score=57.29 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|||++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999998763
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.42 E-value=0.0031 Score=56.87 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998875
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.42 E-value=0.0034 Score=58.51 Aligned_cols=22 Identities=27% Similarity=0.634 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+|+|+|++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0035 Score=58.09 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+|+|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3889999999999999999973
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.30 E-value=0.0034 Score=61.07 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|+.|||||||++.|.+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 5899999999999999999864
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.25 E-value=0.024 Score=60.17 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=26.7
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.++-.+.+.||+||||||++..+....+....+|
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i 189 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI 189 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceE
Confidence 4677799999999999999999988654333443
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.25 E-value=0.0051 Score=57.76 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.7
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+.+.|.||+|||||||..-++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877764
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0041 Score=58.93 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=25.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
-.++.|+||.||||||+.+.|+.-| |-+.+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~i 37 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHL 37 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEE
Confidence 3469999999999999999999876 44555
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.22 E-value=0.0029 Score=59.08 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.19 E-value=0.0041 Score=58.14 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.17 E-value=0.0038 Score=59.22 Aligned_cols=28 Identities=21% Similarity=0.461 Sum_probs=24.9
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.+.++.|+||.||||||+.+.|+.-|
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567899999999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.14 E-value=0.0046 Score=57.49 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.14 E-value=0.0043 Score=57.51 Aligned_cols=24 Identities=25% Similarity=0.412 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999987664
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0028 Score=58.72 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|+|+|++++|||||+|.|.+-.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998854
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.05 E-value=0.0068 Score=55.43 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+++|+|+.|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.05 E-value=0.0043 Score=58.48 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|.||.||||||+.+.|+--|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998655
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.00 E-value=0.005 Score=56.78 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.|+|++||||||+.++|+.-+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0055 Score=57.76 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.||||||..+.|+.-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998644
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.92 E-value=0.0052 Score=58.22 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.++++|.+||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999997543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.86 E-value=0.0058 Score=60.98 Aligned_cols=23 Identities=39% Similarity=0.660 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.++|+|++|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999999853
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.84 E-value=0.0062 Score=56.93 Aligned_cols=23 Identities=22% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999755
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.74 E-value=0.0066 Score=57.15 Aligned_cols=22 Identities=23% Similarity=0.379 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++||.|++||||||+.+.|.-+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999753
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.74 E-value=0.0066 Score=58.31 Aligned_cols=30 Identities=23% Similarity=0.470 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC---CCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW---SDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~---~p~~G~I 557 (788)
+++|-||+||||||+.++|+--| ..+.|.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGdl 37 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 37 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 57899999999999999998544 3444444
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.73 E-value=0.0044 Score=60.21 Aligned_cols=27 Identities=15% Similarity=0.348 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++.|+|-|+-||||||++++|+..++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.69 E-value=0.0082 Score=56.07 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=21.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
++-+.+.++|++||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.58 E-value=0.0065 Score=59.93 Aligned_cols=25 Identities=40% Similarity=0.412 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|+||+|||||||.+.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0078 Score=56.00 Aligned_cols=23 Identities=13% Similarity=0.371 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.||||||..+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.57 E-value=0.0062 Score=57.47 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+|+|-|+.||||||++++|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999865
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.55 E-value=0.0025 Score=57.99 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+++|+|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.009 Score=55.11 Aligned_cols=21 Identities=38% Similarity=0.737 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 488999999999999998774
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.0072 Score=61.99 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++||-|++||||||+.+.|..+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHH
Confidence 58999999999999999988654
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.42 E-value=0.009 Score=57.63 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=28.4
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CCceEEEeec
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLWSD--GRGKITFYVK 562 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p--~~G~I~~~~~ 562 (788)
++|.++-|.|.||||||||.+.|..-+.. .--.+.+||.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD 62 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 62 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcch
Confidence 57889999999999999999998743321 1234666543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.016 Score=53.18 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG-----LWSDGRGK 556 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g-----l~~p~~G~ 556 (788)
+++++|.+|+|||||++-+.+ -|.|+-|.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~ 37 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVED 37 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCcceee
Confidence 589999999999999987764 35566553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.40 E-value=0.0093 Score=54.83 Aligned_cols=22 Identities=23% Similarity=0.522 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
=+++|+|..|||||||++-|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.39 E-value=0.008 Score=58.06 Aligned_cols=35 Identities=26% Similarity=0.476 Sum_probs=26.0
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.++++|||+|+||||.+-=|+..+.-..-+|.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~l 39 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 39 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 57899999999999999876667665543345554
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.0094 Score=56.86 Aligned_cols=31 Identities=39% Similarity=0.512 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCCceEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL---WSDGRGKIT 558 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl---~~p~~G~I~ 558 (788)
+|+|-||+||||||+.+.|+.- ...+.|.++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHH
Confidence 7999999999999999999854 444455553
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.30 E-value=0.0092 Score=56.82 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=20.1
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999986
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.26 E-value=0.01 Score=55.21 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|.||.||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998655
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.011 Score=56.90 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=23.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++|..|+|-|+-||||||+.++|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987644
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.23 E-value=0.011 Score=55.26 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
+||+|+..||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999974
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.013 Score=56.10 Aligned_cols=26 Identities=19% Similarity=0.349 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+|..|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998643
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.02 E-value=0.012 Score=57.64 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
..+.|.||+|+||||++++|+....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999998654
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.01 E-value=0.009 Score=58.14 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCce
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGK 556 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~ 556 (788)
.+.+.||+|+||||+.++|+.-+....+.
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~~ 65 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIHV 65 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCccc
Confidence 47899999999999999999988766443
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.0074 Score=62.49 Aligned_cols=32 Identities=31% Similarity=0.383 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceE
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKI 557 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I 557 (788)
.-++||+||.|||||||++.|.+.+....-+|
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~v 85 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKV 85 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCce
Confidence 56799999999999999999987654433234
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.98 E-value=0.012 Score=56.28 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.89 E-value=0.011 Score=60.41 Aligned_cols=26 Identities=38% Similarity=0.726 Sum_probs=22.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
|+..+.++||+|||||+|.|.|++..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHhhcc
Confidence 34557799999999999999999864
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.88 E-value=0.013 Score=53.96 Aligned_cols=21 Identities=38% Similarity=0.765 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998865
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.87 E-value=0.02 Score=52.58 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG-----LWSDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g-----l~~p~~G~I 557 (788)
+++|+|.+|+|||||++-+.+ -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 589999999999999987653 345665544
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.016 Score=55.73 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=23.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+++.|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999987665
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.83 E-value=0.014 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.-.+.|+||.||||||+.+.|+--|
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999755
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.81 E-value=0.014 Score=54.31 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
++.|+||.||||||+.+.|+--| |-..+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i 31 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHL 31 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceE
Confidence 57799999999999999998754 44554
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.77 E-value=0.013 Score=53.45 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999997754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.014 Score=53.76 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040758 529 LLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~g 548 (788)
++++|++|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999997753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.65 E-value=0.014 Score=53.39 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999988764
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.017 Score=55.72 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|..|+|-|+-||||||++++|.-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 699999999999999999999986554
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.54 E-value=0.016 Score=55.98 Aligned_cols=23 Identities=48% Similarity=0.666 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.+.|.||+|+||||++++++.-.
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 48899999999999999998743
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.53 E-value=0.017 Score=56.37 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+..+.|+||.|+|||||++-++.-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 5678999999999999999987753
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.43 E-value=0.016 Score=53.50 Aligned_cols=21 Identities=33% Similarity=0.680 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.40 E-value=0.017 Score=52.74 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999986653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.02 Score=53.40 Aligned_cols=20 Identities=45% Similarity=0.708 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040758 529 LLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~g 548 (788)
++|+|+.|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999998875
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.34 E-value=0.018 Score=52.95 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
..+||.+++|.|+=||||||++|-+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999876543
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.26 E-value=0.018 Score=52.66 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998763
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.017 Score=55.76 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.|.||+|+||||+++++++-
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999974
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.027 Score=51.20 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.021 Score=56.84 Aligned_cols=27 Identities=41% Similarity=0.636 Sum_probs=23.3
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+...+.+.||+|||||++++.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 445689999999999999999998664
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.019 Score=52.38 Aligned_cols=21 Identities=38% Similarity=0.684 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.13 E-value=0.014 Score=56.51 Aligned_cols=33 Identities=21% Similarity=0.386 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.++++|||+|+||||.+-=|+..+.-..-+|.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 42 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 579999999999998776666655533335554
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.023 Score=52.19 Aligned_cols=24 Identities=33% Similarity=0.691 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|++|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 488999999999999999987643
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.08 E-value=0.036 Score=51.82 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=25.1
Q ss_pred ceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 515 LVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 515 vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++.--+.+ .|.-+.|.|+||+|||||.-.|..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 455555544 488899999999999999876653
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=93.04 E-value=0.023 Score=55.47 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=25.2
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRG 555 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G 555 (788)
...+.|.||.|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 357899999999999999999987765444
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.04 E-value=0.021 Score=52.69 Aligned_cols=21 Identities=29% Similarity=0.656 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 488999999999999998764
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.03 E-value=0.039 Score=50.46 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG-----LWSDGRG 555 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g-----l~~p~~G 555 (788)
++++||++|+|||||++-+.+ -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 478999999999999998874 4456545
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.021 Score=52.14 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|||++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988864
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.031 Score=51.48 Aligned_cols=24 Identities=29% Similarity=0.661 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 488999999999999999987543
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.00 E-value=0.025 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+.+.|.|++|+||||+..-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999877653
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.00 E-value=0.021 Score=53.12 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987763
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.00 E-value=0.019 Score=55.56 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-.++++|||+|+||||.+-=|+.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999987655554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.99 E-value=0.019 Score=55.78 Aligned_cols=25 Identities=44% Similarity=0.684 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
.+.+.||+|+||||+.+++++.+..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~~ 61 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELGV 61 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3679999999999999999986543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.94 E-value=0.25 Score=49.05 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhc
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
..+++|+|..|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.92 E-value=0.028 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred EeCCCEEEEEcCCCCcHHHHHH-HHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLR-AMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~-lL~ 547 (788)
+++|+.+.|.|++|+|||||.. ++.
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 8899999999999999999974 443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.023 Score=54.31 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++||+|..||||||..+.+..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 6899999999999999998743
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.84 E-value=0.026 Score=54.35 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=20.3
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
..++++|||+|+||||.+-=|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999998877777543
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=0.023 Score=52.20 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|+.|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998875
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.77 E-value=0.018 Score=53.43 Aligned_cols=21 Identities=33% Similarity=0.668 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998753
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.76 E-value=0.027 Score=51.80 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040758 529 LLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~g 548 (788)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999976654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.75 E-value=0.026 Score=54.64 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=23.2
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
|++|+.+.|.||+||||||+..-++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 8899999999999999999987776
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.73 E-value=0.046 Score=51.15 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=27.5
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
..++.--+.+ .|.-+.|.|+||+|||||.-.|..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ceEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 3567666777 688999999999999999876653
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.72 E-value=0.028 Score=54.43 Aligned_cols=25 Identities=40% Similarity=0.518 Sum_probs=22.3
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+.+.|.||+|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999976443
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.69 E-value=0.046 Score=50.03 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG-----LWSDGRGK 556 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g-----l~~p~~G~ 556 (788)
+++|+|..|+|||||++-+.. -|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999998753 34566554
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.60 E-value=0.026 Score=51.23 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997763
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.52 E-value=0.027 Score=51.42 Aligned_cols=21 Identities=24% Similarity=0.577 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.51 E-value=0.045 Score=50.17 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-----CCCCCCce
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG-----LWSDGRGK 556 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g-----l~~p~~G~ 556 (788)
++.++|.+|+|||||++-+.+ .+.|+-|.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~ 39 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIED 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCcceee
Confidence 478999999999999997764 34565553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.44 E-value=0.028 Score=51.31 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999987764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.44 E-value=0.016 Score=58.72 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++||.|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999987644
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.028 Score=51.86 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++.|+|++|+|||||++-+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999988764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=0.03 Score=51.13 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.30 E-value=0.027 Score=56.15 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=24.8
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+++...+.|.||+|+|||+|++.+++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 44556699999999999999999999764
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.16 E-value=0.019 Score=55.56 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=20.2
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.-.++++|||+|+||||.+-=|+..+.-...+|-+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 45 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGL 45 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEE
Confidence 34569999999999998765556555433345544
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.14 E-value=0.027 Score=56.86 Aligned_cols=32 Identities=31% Similarity=0.419 Sum_probs=28.3
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.=+.|-+||+.+|+|++|+|||||+..|++-.
T Consensus 36 ~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 36 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 33688999999999999999999999998744
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.07 E-value=0.029 Score=53.91 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.+.||+|+||||++++++.-
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 789999999999999999864
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.07 E-value=0.028 Score=55.47 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.7
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
..+.|.||+|||||++.+.|+..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhc
Confidence 35889999999999999999974
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.04 E-value=0.035 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998644
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.02 E-value=0.033 Score=51.24 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987664
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.034 Score=51.64 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.035 Score=51.25 Aligned_cols=21 Identities=43% Similarity=0.760 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999998765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=91.91 E-value=0.039 Score=54.68 Aligned_cols=35 Identities=31% Similarity=0.365 Sum_probs=28.2
Q ss_pred cceeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 514 TLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 514 ~vL~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
+-|+++..=+.+|+.+.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 44665554479999999999999999999877763
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.86 E-value=0.035 Score=50.95 Aligned_cols=20 Identities=40% Similarity=0.777 Sum_probs=18.2
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040758 529 LLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~g 548 (788)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997763
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.80 E-value=0.03 Score=51.50 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.++|++|+|||||++-+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999988753
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.036 Score=52.11 Aligned_cols=20 Identities=45% Similarity=0.753 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhc
Q 040758 529 LLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~g 548 (788)
++|+|+.|+|||||++-+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997663
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.78 E-value=0.037 Score=50.57 Aligned_cols=21 Identities=24% Similarity=0.558 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999996553
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=91.77 E-value=0.036 Score=53.77 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++||+|...||||||++.|.+-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.028 Score=51.71 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|++|+|||||++-+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986643
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.027 Score=51.85 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986654
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.59 E-value=0.041 Score=56.56 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
.-+++|+||.|||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.065 Score=49.58 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC----CCCCCceE
Q 040758 528 HLLVMGPSGSGKTSLLRAMA-GL----WSDGRGKI 557 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~-gl----~~p~~G~I 557 (788)
++.++|.+|+|||||++-+. +- |.|+-|..
T Consensus 4 KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~ 38 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCceeec
Confidence 58899999999999997554 32 45655543
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.045 Score=50.05 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++++|..|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 57899999999999999887
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.44 E-value=0.035 Score=53.96 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=30.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHhc--CCEEEEEecCcc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEAA--GITYISVGHRRT 749 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~~--g~TvI~IaHr~~ 749 (788)
+.+++++||+-. |.......+.+.+.+. +..+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 567999999965 7778877788888763 445788888864
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.43 E-value=0.036 Score=51.29 Aligned_cols=31 Identities=29% Similarity=0.613 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKIT 558 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~ 558 (788)
++.+||..|+|||||++-+..-.-|+.|-..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~~ 34 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIVE 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEEE
Confidence 5789999999999999988777778888544
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.35 E-value=0.038 Score=52.97 Aligned_cols=21 Identities=52% Similarity=0.768 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHhcC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl 549 (788)
+.+.||.|+||||++++++.-
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 789999999999999999974
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=91.28 E-value=0.047 Score=53.86 Aligned_cols=24 Identities=50% Similarity=0.750 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
.+.+.||+|+|||+|++.|++.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEecCCCCChhHHHHHHHHHcC
Confidence 378999999999999999998653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.046 Score=49.96 Aligned_cols=21 Identities=38% Similarity=0.657 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999996543
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.18 E-value=0.038 Score=59.34 Aligned_cols=26 Identities=38% Similarity=0.742 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
.-+.++||+|||||-|.+.|+++.+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V 75 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA 75 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999997753
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=0.05 Score=50.68 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh--cCCCCCCc
Q 040758 528 HLLVMGPSGSGKTSLLRAMA--GLWSDGRG 555 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~--gl~~p~~G 555 (788)
++.|+|.+|+|||||++-+. --+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 58899999999999999873 23568888
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.052 Score=50.50 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=17.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999998765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.00 E-value=0.051 Score=53.81 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+.|.||+|+|||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 38899999999999999999854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.051 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.623 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 488999999999999998753
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.053 Score=54.61 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
++||-|+.|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 689999999999999987753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.56 E-value=0.059 Score=51.87 Aligned_cols=30 Identities=27% Similarity=0.390 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCcHHHHHHHH-hcCCCCCCce
Q 040758 527 EHLLVMGPSGSGKTSLLRAM-AGLWSDGRGK 556 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL-~gl~~p~~G~ 556 (788)
-++.|+|.+|+|||||++-+ .+-+.|+-|-
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCe
Confidence 36899999999999999876 3455677773
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.064 Score=49.65 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
+++++|.+|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999996654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.28 E-value=0.096 Score=48.50 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=23.7
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhc
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~g 548 (788)
++.--+. -.|.-+.|.|+||+|||||.-.|..
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4553343 4588999999999999998855543
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=90.06 E-value=0.067 Score=51.73 Aligned_cols=22 Identities=18% Similarity=0.289 Sum_probs=19.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhc
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~g 548 (788)
.++||.|+-||||||..+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999999954
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.05 E-value=0.065 Score=50.00 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
+++++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999987654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.85 E-value=0.05 Score=53.18 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
++.|+||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 46677999999999999999754
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.73 E-value=0.073 Score=53.37 Aligned_cols=54 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred ChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEec
Q 040758 693 SLGEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIEA-AGITYISVGH 746 (788)
Q Consensus 693 SGGQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaH 746 (788)
...+.+-.++++..+.+|. ++..+.++..+-......+.+.++. ..+|++++++
T Consensus 145 ~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~~~r~i~Vltk 201 (299)
T d2akab1 145 PDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITK 201 (299)
T ss_dssp TTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEEC
T ss_pred hhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcCCCceeeEEec
Confidence 3344445588899999987 4556766666655554556666654 4689999987
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.63 E-value=0.035 Score=56.97 Aligned_cols=27 Identities=37% Similarity=0.653 Sum_probs=24.5
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSD 552 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p 552 (788)
|..+.|+||.|+|||||++.++++.+|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 456899999999999999999999876
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=89.54 E-value=0.08 Score=53.72 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+||||..-+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999885
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=89.33 E-value=0.086 Score=53.09 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHh-cCCEEEEEec
Q 040758 695 GEQQRLAFARLLLSKPQ--IVLLDESTSALDEANEAHLYEQIEA-AGITYISVGH 746 (788)
Q Consensus 695 GQrQRiaIARALl~~p~--iLiLDEpTSaLD~~se~~i~~~L~~-~g~TvI~IaH 746 (788)
.+.+--++++..+++|. ++....++..........+.+.++. ..+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEec
Confidence 34456678888898887 5666676666666556666666654 4689999887
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.08 Score=53.05 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
-+|+|+||-++|||||+|.|.|-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.083 Score=50.92 Aligned_cols=25 Identities=16% Similarity=0.414 Sum_probs=21.9
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+.++|=|+-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999997554
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.14 E-value=0.071 Score=53.03 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=29.9
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCce-EEEe
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGK-ITFY 560 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~-I~~~ 560 (788)
=+++|.++-|.||+|||||||.-.++.-..-..|. +++|
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid 89 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 89 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence 57899999999999999999987776655444454 4543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.05 E-value=0.11 Score=48.62 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=0.098 Score=53.32 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEEe
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFY 560 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~~ 560 (788)
...+.++||+|+|||.|.+.|+..+.. --|.+|
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d 84 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFD 84 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEE
T ss_pred ceEEEEECCCcchhHHHHHHHHhhccC--CeeEec
Confidence 335789999999999999999997642 355553
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.63 E-value=0.091 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 526 KEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 526 Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
+-.+||||...||||||++.|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHCC
Confidence 346999999999999999999875
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.23 E-value=0.12 Score=51.63 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=26.9
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.=+.+-+||+++|.|++|+|||||+.-++.-
T Consensus 61 ~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 61 LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3478899999999999999999998777653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=88.13 E-value=0.088 Score=55.47 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=27.1
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHhcCCEEEEEecCcc
Q 040758 711 QIVLLDESTSALDEANEAHLYEQIEAAGITYISVGHRRT 749 (788)
Q Consensus 711 ~iLiLDEpTSaLD~~se~~i~~~L~~~g~TvI~IaHr~~ 749 (788)
-++++||+-+-...+.-..+....++.|..+++++..++
T Consensus 278 v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ 316 (433)
T d1e9ra_ 278 LWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTS 316 (433)
T ss_dssp EEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHH
T ss_pred eEEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHH
Confidence 368889987765544444455555667999999998853
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.94 E-value=0.092 Score=54.66 Aligned_cols=29 Identities=41% Similarity=0.518 Sum_probs=26.0
Q ss_pred EeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 523 INEKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
++++..+.+.||.|+||||+.+.|+++..
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 36778999999999999999999999864
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.59 E-value=0.13 Score=47.34 Aligned_cols=28 Identities=29% Similarity=0.517 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC---CCCCCc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL---WSDGRG 555 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl---~~p~~G 555 (788)
++.++|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5789999999999999988543 445556
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.75 E-value=0.17 Score=50.51 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=31.5
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
.=+.|-+|++++|+|++|+|||+|+..+..-..-+...+.+
T Consensus 60 ~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 60 AMIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred ccccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 33788999999999999999999998766555444444444
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.74 E-value=0.14 Score=50.89 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC-----------CCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW-----------SDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~-----------~p~~G~I~~ 559 (788)
-++||||-.-+|||||++.|++-- +|.-|.|.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v 46 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEec
Confidence 479999999999999999999432 455577754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.72 E-value=0.15 Score=50.62 Aligned_cols=20 Identities=40% Similarity=0.667 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
.+||+|+.|+|||||+..|+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999985
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.29 E-value=0.16 Score=48.17 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 040758 528 HLLVMGPSGSGKTSLLRAMAG 548 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~g 548 (788)
.+||+|..++|||||+..|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.28 E-value=0.13 Score=51.33 Aligned_cols=38 Identities=21% Similarity=0.282 Sum_probs=30.1
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=++.|.++-|.||+|+|||||.-.++....-..|.+.|
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vy 93 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAF 93 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEE
Confidence 57899999999999999999976666655555666444
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.84 E-value=0.17 Score=50.49 Aligned_cols=20 Identities=15% Similarity=0.220 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040758 528 HLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~ 547 (788)
.+||+|+.|||||||+..|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999984
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.64 E-value=0.15 Score=50.74 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=30.4
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 522 VINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 522 ~i~~Ge~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
=++.|.++-|-||+|||||||.-.++....-..|.+.|
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~y 90 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAF 90 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999998887765544555444
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=85.22 E-value=0.27 Score=50.29 Aligned_cols=32 Identities=31% Similarity=0.409 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+|.|=|+-||||||+++.|..-+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57889999999999999999987765554444
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.13 E-value=0.16 Score=52.81 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC
Q 040758 529 LLVMGPSGSGKTSLLRAMAGLW 550 (788)
Q Consensus 529 iaIvG~sGsGKSTLl~lL~gl~ 550 (788)
+.++||+|+|||-|.|.|+.+.
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 6688999999999999999876
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=84.80 E-value=0.21 Score=47.76 Aligned_cols=41 Identities=15% Similarity=0.217 Sum_probs=27.5
Q ss_pred ccCCCEEEEecCCCCC-CHHHHHHHHHHHH---hcCCEEEEEecC
Q 040758 707 LSKPQIVLLDESTSAL-DEANEAHLYEQIE---AAGITYISVGHR 747 (788)
Q Consensus 707 l~~p~iLiLDEpTSaL-D~~se~~i~~~L~---~~g~TvI~IaHr 747 (788)
+++.++|++|+--.=. +...+..++..+. +.|+.+|+.+.+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 4578889999874432 4566666666554 367777777776
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.56 E-value=0.21 Score=47.30 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=28.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 709 KPQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 709 ~p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
+.+++|+||+= .|..++...+.+.+++ .+..+|++|++.+
T Consensus 108 ~~kviIide~d-~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~ 149 (207)
T d1a5ta2 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (207)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred ccceEEechhh-hhhhhhhHHHHHHHHhhcccceeeeeecChh
Confidence 47899999974 3556667777788876 3445677888864
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=84.38 E-value=0.18 Score=48.48 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999874
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.26 E-value=0.086 Score=45.58 Aligned_cols=37 Identities=14% Similarity=0.113 Sum_probs=24.6
Q ss_pred EeCCCEEEEEcCCCCcHHHHH-HHHhcCCCCCCceEEE
Q 040758 523 INEKEHLLVMGPSGSGKTSLL-RAMAGLWSDGRGKITF 559 (788)
Q Consensus 523 i~~Ge~iaIvG~sGsGKSTLl-~lL~gl~~p~~G~I~~ 559 (788)
+++|+.+.|++|+|||||+.. ..+..........+.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli 41 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLV 41 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEE
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeee
Confidence 467999999999999999544 4444433333344444
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=84.12 E-value=0.28 Score=47.30 Aligned_cols=39 Identities=15% Similarity=0.248 Sum_probs=30.6
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHh--cCCEEEEEecCcc
Q 040758 710 PQIVLLDESTSALDEANEAHLYEQIEA--AGITYISVGHRRT 749 (788)
Q Consensus 710 p~iLiLDEpTSaLD~~se~~i~~~L~~--~g~TvI~IaHr~~ 749 (788)
.+++|+||+=. |+......+...+++ .+..+|++|++.+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~ 156 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 156 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcc
Confidence 56999999965 788888888888876 4567888888854
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=84.11 E-value=0.25 Score=48.95 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.2
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcC
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.-+.||||+|+|||+++.-++..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999998864
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.85 E-value=0.28 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl 549 (788)
-+.||||+|.|||+++.-|+..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHH
Confidence 4789999999999999999874
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=83.16 E-value=0.25 Score=50.13 Aligned_cols=33 Identities=30% Similarity=0.561 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCcHHHHHHHHhcCC-CCCCceEEE
Q 040758 527 EHLLVMGPSGSGKTSLLRAMAGLW-SDGRGKITF 559 (788)
Q Consensus 527 e~iaIvG~sGsGKSTLl~lL~gl~-~p~~G~I~~ 559 (788)
-.+.++||+|+|||.+.+.|+... .....-+.+
T Consensus 54 ~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~ 87 (315)
T d1qvra3 54 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 87 (315)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred eEEEEECCCcchHHHHHHHHHHHhcCCCcceEEE
Confidence 357899999999999999999864 333344555
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.04 E-value=0.24 Score=50.40 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=24.4
Q ss_pred eeeeeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC
Q 040758 516 VRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGL 549 (788)
Q Consensus 516 L~~isl~i~~Ge~iaIvG~sGsGKSTLl~lL~gl 549 (788)
.+-+-...++| .+.++||+|+|||.|.+.|++-
T Consensus 114 ~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 114 AEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEETTEEEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred HHHhhcccCCc-eEEEECCCCccHHHHHHHHHHH
Confidence 34344455555 4556899999999999999975
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.65 E-value=0.29 Score=50.01 Aligned_cols=32 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCCceEEE
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWSDGRGKITF 559 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~p~~G~I~~ 559 (788)
+|.|=|+-||||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 58899999999999999999887765445544
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=82.38 E-value=0.4 Score=45.03 Aligned_cols=27 Identities=33% Similarity=0.735 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 525 EKEHLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 525 ~Ge~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
|.=.+||+|.-.+|||||++.|++...
T Consensus 7 p~ini~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 7 PEVNIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred CCeEEEEEEccCCcHHHHHHHHHhhhc
Confidence 333589999999999999999998654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.25 E-value=0.22 Score=49.86 Aligned_cols=29 Identities=24% Similarity=0.310 Sum_probs=25.1
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHh
Q 040758 519 LSLVINEKEHLLVMGPSGSGKTSLLRAMA 547 (788)
Q Consensus 519 isl~i~~Ge~iaIvG~sGsGKSTLl~lL~ 547 (788)
.=+.+-+||+++|+|++|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34789999999999999999999976554
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=81.41 E-value=0.27 Score=42.81 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=21.9
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHH
Q 040758 705 LLLSKPQIVLLDESTSALDEANEAHLYEQIE 735 (788)
Q Consensus 705 ALl~~p~iLiLDEpTSaLD~~se~~i~~~L~ 735 (788)
-.+.+-+++|+||+=. +|..+...+...++
T Consensus 90 ~~~~~~~~vIiDE~H~-~~~~~~~~~~~~l~ 119 (136)
T d1a1va1 90 CSGGAYDIIICDECHS-TDATSILGIGTVLD 119 (136)
T ss_dssp GGGCCCSEEEEETTTC-CSHHHHHHHHHHHH
T ss_pred hhhhcCCEEEEecccc-cCHHHHHHHHHHHH
Confidence 3456789999999964 68887766655554
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=80.53 E-value=0.36 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q 040758 528 HLLVMGPSGSGKTSLLRAMAGLWS 551 (788)
Q Consensus 528 ~iaIvG~sGsGKSTLl~lL~gl~~ 551 (788)
+|+|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 588999999999999999997654
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.01 E-value=0.42 Score=41.38 Aligned_cols=35 Identities=11% Similarity=0.109 Sum_probs=26.9
Q ss_pred eCCCEEEEEcCCCCcHHHHHHHH-hcCCCCCCc-eEE
Q 040758 524 NEKEHLLVMGPSGSGKTSLLRAM-AGLWSDGRG-KIT 558 (788)
Q Consensus 524 ~~Ge~iaIvG~sGsGKSTLl~lL-~gl~~p~~G-~I~ 558 (788)
++|=++-+.|-+|||||||.+.| ..|.+-..| .|.
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vt 40 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYK 40 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEE
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceE
Confidence 46778999999999999999988 566665433 344
|