Citrus Sinensis ID: 040760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
KSLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
kslvnshgeakqafgesssdsnevefsggggqdepstlegtggnlllrgkqgsqtsdqpkeEYIHVRArrgqatnshSLVERVRREKISERMKFLQNLSLAIEETGRS
Flexible Loop (DISEMBL)
kslvnshgeakqafgesssdsnEVEFSggggqdepstlEGTGGNLLlrgkqgsqtsdqpKEEYIHVrarrgqatnshslvervrrekisermkflqnlslaieetgrs
Low Complexity Region (SEG)
KSLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS
Disordered region (IsUnstruct)
************************************************************************************************************
Disordered Region (DISOPRED)
*************************************************************************************EKISERMKFLQNLS**I******
Disordered Region (DISEMBL)
***********************************STLEGTGGNLLLRGK*********KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS
Disordered Region (DISPRO)
***********************************************************KEEYIHVRARRGQ******LVERVRREKISERMKFLQNLSLAIEE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KSLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETGRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q9CAA9	486	Transcription factor bHLH	yes	no	0.453	0.100	0.836	3e-18
Q6NKN9	366	Transcription factor bHLH	no	no	0.453	0.133	0.755	4e-15
Q9C670	390	Transcription factor bHLH	no	no	0.509	0.141	0.696	6e-15
Q93W88	286	Transcription factor bHLH	no	no	0.537	0.202	0.65	8e-14
Q9SRT2	456	Transcription factor bHLH	no	no	0.398	0.094	0.790	1e-13
Q8GY61	335	Transcription factor bHLH	no	no	0.361	0.116	0.846	1e-13
Q9FJL4	498	Transcription factor bHLH	no	no	0.453	0.098	0.673	3e-13
Q0JXE7	343	Transcription factor BPE	no	no	0.379	0.119	0.780	8e-13
Q9LK48	371	Transcription factor bHLH	no	no	0.444	0.129	0.673	5e-12
Q9ZPW3	337	Transcription factor bHLH	no	no	0.398	0.127	0.674	7e-11

>sp|Q9CAA9|BH049_ARATH Transcription factor bHLH49 OS=Arabidopsis thaliana GN=BHLH49 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 45/49 (91%)

Query: 50  KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           +QG Q+SD PK+ YIHVRARRGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 287 QQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDL 335

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKN9|BH074_ARATH Transcription factor bHLH74 OS=Arabidopsis thaliana GN=BHLH74 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query: 50  KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           K+ SQ+ + PKE YIH+RARRGQATNSHSL ERVRREKISERM+ LQ L
Sbjct: 190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQEL 238

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C670|BH076_ARATH Transcription factor bHLH76 OS=Arabidopsis thaliana GN=BHLH76 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/56 (69%), Positives = 46/56 (82%), Gaps = 1/56 (1%)

Query: 54  QTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEE-TGRS 108
           Q SD  K+ YIH+RARRGQATNSHSL ERVRREKISERMKFLQ+L    ++ TG++
Sbjct: 211 QPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKA 266

Arabidopsis thaliana (taxid: 3702)

>sp|Q93W88|BH137_ARATH Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 2/60 (3%)

Query: 39  EGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           EG  G    + K+GS+  ++P  +YIHVRARRGQAT+SHSL ERVRREKISERM+ LQNL
Sbjct: 111 EGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSHSLAERVRREKISERMRTLQNL 168

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRT2|BH062_ARATH Transcription factor bHLH62 OS=Arabidopsis thaliana GN=BHLH62 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/43 (79%), Positives = 38/43 (88%)

Query: 56  SDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           S  P ++YIHVRARRGQAT+SHSL ERVRREKISERMK LQ+L
Sbjct: 248 SIDPYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDL 290

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY61|BH063_ARATH Transcription factor bHLH63 OS=Arabidopsis thaliana GN=BHLH63 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/39 (84%), Positives = 37/39 (94%)

Query: 60  KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           K +YIHVRARRGQAT+SHS+ ERVRREKISERMKFLQ+L
Sbjct: 166 KTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDL 204

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJL4|BH078_ARATH Transcription factor bHLH78 OS=Arabidopsis thaliana GN=BHLH78 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%)

Query: 50  KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           K  +    +P ++YIHVRARRGQAT+SHSL ERVRREKI ERMK LQ+L
Sbjct: 285 KSNNTKPPEPPKDYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDL 333

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JXE7|BPE_ARATH Transcription factor BPE OS=Arabidopsis thaliana GN=BPE PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/41 (78%), Positives = 37/41 (90%)

Query: 58  QPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           +P ++YIHVRARRGQAT+SHSL ER RREKISERMK LQ+L
Sbjct: 128 EPTKDYIHVRARRGQATDSHSLAERARREKISERMKILQDL 168

Involved in the control of petal size, by interfering with postmitotic cell expansion to limit final petal cell size.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK48|BH077_ARATH Transcription factor bHLH77 OS=Arabidopsis thaliana GN=BHLH77 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 39/49 (79%), Gaps = 1/49 (2%)

Query: 50  KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           K  ++  + PK+ YIHVRARRGQAT+SHSL ER RREKISERM  LQ+L
Sbjct: 176 KDDAKPPEAPKD-YIHVRARRGQATDSHSLAERARREKISERMTLLQDL 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPW3|BH064_ARATH Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 37/43 (86%)

Query: 56  SDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           S+  K +YIHVRARRGQAT+ HSL ER RREKIS++MK+LQ++
Sbjct: 175 SENQKLDYIHVRARRGQATDRHSLAERARREKISKKMKYLQDI 217

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
224108619	562	predicted protein [Populus trichocarpa]	0.898	0.172	0.5	3e-26
255547017	566	conserved hypothetical protein [Ricinus	0.898	0.171	0.503	1e-23
118486023	348	unknown [Populus trichocarpa]	0.898	0.278	0.456	2e-21
359473485	609	PREDICTED: LOW QUALITY PROTEIN: transcri	0.777	0.137	0.617	4e-20
297738215	496	unnamed protein product [Vitis vinifera]	0.777	0.169	0.617	4e-20
449434704	561	PREDICTED: transcription factor bHLH49-l	0.462	0.089	0.9	3e-18
449493518	517	PREDICTED: transcription factor bHLH49-l	0.462	0.096	0.9	3e-18
449463525	533	PREDICTED: transcription factor bHLH49-l	0.611	0.123	0.710	4e-18
449518045	533	PREDICTED: transcription factor bHLH49-l	0.611	0.123	0.710	4e-18
356495611	414	PREDICTED: transcription factor bHLH49-l	0.546	0.142	0.761	5e-18

>gi|224108619|ref|XP_002314910.1| predicted protein [Populus trichocarpa] gi|222863950|gb|EEF01081.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 79/148 (53%), Gaps = 51/148 (34%)

Query: 2   SLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLR------------- 48
           SL  S  EAK+  G S +DS+E EFSGG GQDEPS LEG  G L  +             
Sbjct: 254 SLARSRDEAKKGVGGSGNDSDEAEFSGGSGQDEPSLLEGNCGELSAKSLGSKKRKRSGED 313

Query: 49  --------------------------------------GKQGSQTSDQPKEEYIHVRARR 70
                                                 GKQGSQ SDQPKEEYIHVRARR
Sbjct: 314 AELDQAKGTPQSAKGSPETQQKGDQKPTSTTSKASGKQGKQGSQGSDQPKEEYIHVRARR 373

Query: 71  GQATNSHSLVERVRREKISERMKFLQNL 98
           GQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 374 GQATNSHSLAERVRREKISERMKFLQDL 401

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547017|ref|XP_002514566.1| conserved hypothetical protein [Ricinus communis] gi|223546170|gb|EEF47672.1| conserved hypothetical protein [Ricinus communis]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 80/151 (52%), Gaps = 54/151 (35%)

Query: 2   SLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTG------------------- 42
           SLV S+ EAKQ  G S  +S E EFSGGGGQ+E STLEG G                   
Sbjct: 253 SLVRSNDEAKQGAGGSGDESEEAEFSGGGGQEEASTLEGNGMELSAKSLGLKKRKRNGQD 312

Query: 43  -------GNLL-------------------------LRGKQ---GSQTSDQPKEEYIHVR 67
                  GNL                            GKQ   GSQ SD PKEEYIHVR
Sbjct: 313 IELDQAKGNLQSVEAAKDNVEAQQKGDQTPTSTPNKTSGKQGKQGSQASDPPKEEYIHVR 372

Query: 68  ARRGQATNSHSLVERVRREKISERMKFLQNL 98
           ARRGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 373 ARRGQATNSHSLAERVRREKISERMKFLQDL 403

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486023|gb|ABK94855.1| unknown [Populus trichocarpa]

 Score =  106 bits (265), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/151 (45%), Positives = 76/151 (50%), Gaps = 54/151 (35%)

Query: 2   SLVNSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEG-----------------TGGN 44
           SL  S  EAKQ  G S +DS+E EFSGGGGQDEPS LEG                  G +
Sbjct: 32  SLARSRDEAKQGMGGSGNDSDEAEFSGGGGQDEPSMLEGNCRELSAKSLGSNKRKRNGQD 91

Query: 45  LLLRGKQGSQTSDQP-------------------------------------KEEYIHVR 67
             L   +G+  S +P                                     KEEYIHVR
Sbjct: 92  AELDQAKGTPQSAEPAKGSPETQQKGDQKPTSTTSKDAGKQGKQGSLGSDQPKEEYIHVR 151

Query: 68  ARRGQATNSHSLVERVRREKISERMKFLQNL 98
           ARRGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 152 ARRGQATNSHSLAERVRREKISERMKFLQDL 182

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473485|ref|XP_003631305.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH49-like [Vitis vinifera]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 5/89 (5%)

Query: 10  AKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRAR 69
           + Q  GE+S D+ E++  G      PS++     N    GKQG+Q SD PKEEYIHVRAR
Sbjct: 356 SPQQPGEASKDNPEIQHKG---DQNPSSVPSK--NTGKHGKQGAQASDPPKEEYIHVRAR 410

Query: 70  RGQATNSHSLVERVRREKISERMKFLQNL 98
           RGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 411 RGQATNSHSLAERVRREKISERMKFLQDL 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738215|emb|CBI27416.3| unnamed protein product [Vitis vinifera]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/89 (61%), Positives = 64/89 (71%), Gaps = 5/89 (5%)

Query: 10  AKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRAR 69
           + Q  GE+S D+ E++  G      PS++     N    GKQG+Q SD PKEEYIHVRAR
Sbjct: 251 SPQQPGEASKDNPEIQHKG---DQNPSSVPSK--NTGKHGKQGAQASDPPKEEYIHVRAR 305

Query: 70  RGQATNSHSLVERVRREKISERMKFLQNL 98
           RGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct: 306 RGQATNSHSLAERVRREKISERMKFLQDL 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434704|ref|XP_004135136.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 45/50 (90%)

Query: 49  GKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           GKQ SQ SD PKEEYIHVRARRGQATNSHSL ERVRREKISERMKFLQ L
Sbjct: 352 GKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQEL 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493518|ref|XP_004159328.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 45/50 (90%)

Query: 49  GKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
           GKQ SQ SD PKEEYIHVRARRGQATNSHSL ERVRREKISERMKFLQ L
Sbjct: 308 GKQASQPSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQEL 357

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463525|ref|XP_004149484.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 53/69 (76%), Gaps = 3/69 (4%)

Query: 30  GGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKIS 89
           GGQ+  ST     G    +GKQ SQ SD PKEEYIHVRARRGQATNSHSL ERVRREKIS
Sbjct: 308 GGQNPSSTTSKPAGK---QGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKIS 364

Query: 90  ERMKFLQNL 98
           ERM+ LQ+L
Sbjct: 365 ERMRLLQDL 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518045|ref|XP_004166054.1| PREDICTED: transcription factor bHLH49-like [Cucumis sativus]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 53/69 (76%), Gaps = 3/69 (4%)

Query: 30  GGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKIS 89
           GGQ+  ST     G    +GKQ SQ SD PKEEYIHVRARRGQATNSHSL ERVRREKIS
Sbjct: 308 GGQNPSSTTSKPAGK---QGKQDSQPSDAPKEEYIHVRARRGQATNSHSLAERVRREKIS 364

Query: 90  ERMKFLQNL 98
           ERM+ LQ+L
Sbjct: 365 ERMRLLQDL 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495611|ref|XP_003516668.1| PREDICTED: transcription factor bHLH49-like [Glycine max]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 51/63 (80%), Gaps = 4/63 (6%)

Query: 36  STLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFL 95
           ST + +G N     K GSQ SD PKEEYIHVRARRGQATNSHSL ERVRREKISERMKFL
Sbjct: 195 STAKASGKN----AKLGSQASDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFL 250

Query: 96  QNL 98
           Q+L
Sbjct: 251 QDL 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2205420	486	AT1G68920 [Arabidopsis thalian	0.870	0.193	0.526	4.3e-17
UNIPROTKB|Q69JJ6	428	OSJNBa0026C08.22 "TA1 protein-	0.703	0.177	0.609	1.1e-16
TAIR|locus:2028804	390	CIB5 "AT1G26260" [Arabidopsis	0.509	0.141	0.696	2e-15
UNIPROTKB|Q5VR96	437	P0038C05.31-1 "Os06g0275600 pr	0.787	0.194	0.526	2.3e-15
TAIR|locus:505006688	286	AT5G50915 "AT5G50915" [Arabido	0.824	0.311	0.478	3.3e-15
UNIPROTKB|Q5N802	481	P0004D12.24 "BHLH transcriptio	0.75	0.168	0.523	3.8e-15
UNIPROTKB|Q84T08	265	OSJNBa0087C10.10 "BHLH transcr	0.777	0.316	0.488	6.9e-15
TAIR|locus:2201906	366	AT1G10120 "AT1G10120" [Arabido	0.453	0.133	0.755	1e-14
UNIPROTKB|Q6Z2G7	361	P0680A05.9 "Putative bHLH tran	0.398	0.119	0.75	4.7e-14
UNIPROTKB|Q69WS3	268	OJ1118_E12.15 "Putative bHLH p	0.777	0.313	0.483	4.9e-14

TAIR|locus:2205420 AT1G68920 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 4.3e-17, P = 4.3e-17
 Identities = 50/95 (52%), Positives = 58/95 (61%)

Query:     5 NSHGEAKQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQ-GSQTSDQPKEEY 63
             N    ++ A    S  S E   + G  +        + G     GKQ G Q+SD PK+ Y
Sbjct:   241 NGQKNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPGKKSNSGKQQGKQSSDPPKDGY 300

Query:    64 IHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
             IHVRARRGQATNSHSL ERVRREKISERMKFLQ+L
Sbjct:   301 IHVRARRGQATNSHSLAERVRREKISERMKFLQDL 335

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q69JJ6 OSJNBa0026C08.22 "TA1 protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 212 (79.7 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 50/82 (60%), Positives = 58/82 (70%)

Query:    19 SDS-NE-VEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNS 76
             SDS NE V     G +  P+T  G G +   +GK   +TS+  KEEYIHVRARRGQATNS
Sbjct:   203 SDSANESVHSKDKGEESSPATTNG-GKS---KGKGAKETSESQKEEYIHVRARRGQATNS 258

Query:    77 HSLVERVRREKISERMKFLQNL 98
             HSL ER+RREKISERMK LQ+L
Sbjct:   259 HSLAERLRREKISERMKLLQDL 280

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2028804 CIB5 "AT1G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 39/56 (69%), Positives = 46/56 (82%)

Query:    54 QTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEE-TGRS 108
             Q SD  K+ YIH+RARRGQATNSHSL ERVRREKISERMKFLQ+L    ++ TG++
Sbjct:   211 QPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKA 266

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IGI

GO:0048513 "organ development" evidence=RCA

UNIPROTKB|Q5VR96 P0038C05.31-1 "Os06g0275600 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 200 (75.5 bits), Expect = 2.3e-15, P = 2.3e-15
 Identities = 49/93 (52%), Positives = 56/93 (60%)

Query:     7 HGEA-KQAFGESSSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIH 65
             H E  +Q     S+  NE +  G     EP       G     GKQ    +  PKE+YIH
Sbjct:   207 HAEGGEQLATVGSAQKNEDDEKG-----EPKRSSVASGKS--SGKQIKDNAGSPKEDYIH 259

Query:    66 VRARRGQATNSHSLVERVRREKISERMKFLQNL 98
             VRARRGQATNSHSL ERVRREKISERMK+LQ+L
Sbjct:   260 VRARRGQATNSHSLAERVRREKISERMKYLQDL 292

GO:0005634 "nucleus" evidence=IC

TAIR|locus:505006688 AT5G50915 "AT5G50915" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 44/92 (47%), Positives = 63/92 (68%)

Query:    18 SSDSNEVEFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQATNSH 77
             S+ +N  +  G   ++  ++ EG  G    + K+GS+  ++P  +YIHVRARRGQAT+SH
Sbjct:    90 SAITNTGKTRGRKARNSNNSKEGVEGRKSKKQKRGSK--EEPPTDYIHVRARRGQATDSH 147

Query:    78 SLVERVRREKISERMKFLQNLSLAIEE-TGRS 108
             SL ERVRREKISERM+ LQNL    ++ TG++
Sbjct:   148 SLAERVRREKISERMRTLQNLVPGCDKVTGKA 179

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009739 "response to gibberellin stimulus" evidence=IEP

UNIPROTKB|Q5N802 P0004D12.24 "BHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 199 (75.1 bits), Expect = 3.8e-15, P = 3.8e-15
 Identities = 44/84 (52%), Positives = 57/84 (67%)

Query:    16 ESSSDSNEV-EFSGGGGQDEPSTLEGTGGNLLLRGKQGSQTSDQPKEEYIHVRARRGQAT 74
             +S+ +SN   E + G G+   S  E  GG    +GK  S    +P ++YIHVRARRG+AT
Sbjct:   228 KSTEESNAAAEENSGKGKAAQSNSENGGGKK--QGKDSSSKPPEPPKDYIHVRARRGEAT 285

Query:    75 NSHSLVERVRREKISERMKFLQNL 98
             +SHSL ERVRREKIS+RMK LQ+L
Sbjct:   286 DSHSLAERVRREKISQRMKLLQDL 309

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q84T08 OSJNBa0087C10.10 "BHLH transcription factor, putative, expressed" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/88 (48%), Positives = 52/88 (59%)

Query:    15 GESSSDSNEVEFSGGGGQDEPSTL----EGTGGNLLLRGKQGSQTSDQPKEEYIHVRARR 70
             G+  +DS    F       + S+L    E    N    G Q     + PK++YIHVRARR
Sbjct:    81 GQDLTDSEAKRFKASKSSGDNSSLRTEAETDSRNASKSGDQNPPPPEPPKQDYIHVRARR 140

Query:    71 GQATNSHSLVERVRREKISERMKFLQNL 98
             GQAT+SHSL ER RREKISERMK LQ+L
Sbjct:   141 GQATDSHSLAERARREKISERMKILQDL 168

GO:0005634 "nucleus" evidence=IC

TAIR|locus:2201906 AT1G10120 "AT1G10120" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 37/49 (75%), Positives = 42/49 (85%)

Query:    50 KQGSQTSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
             K+ SQ+ + PKE YIH+RARRGQATNSHSL ERVRREKISERM+ LQ L
Sbjct:   190 KESSQSEEAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQEL 238

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

UNIPROTKB|Q6Z2G7 P0680A05.9 "Putative bHLH transcription factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 162 (62.1 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
 Identities = 33/44 (75%), Positives = 39/44 (88%)

Query:    55 TSDQPKEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNL 98
             T+ Q K +YIHVRARRGQAT+SHSL ERVRRE+ISERM++LQ L
Sbjct:   154 TAGQ-KTDYIHVRARRGQATDSHSLAERVRRERISERMRYLQEL 196

GO:0005634 "nucleus" evidence=IC

UNIPROTKB|Q69WS3 OJ1118_E12.15 "Putative bHLH protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 43/89 (48%), Positives = 52/89 (58%)

Query:    15 GESSSDSNEVE----FSGGGGQDEPSTLEGT-GGNLLLRGKQGSQTSDQPKEEYIHVRAR 69
             G   SD+ E +           D   T  GT  GN      + +   + PK++YIHVRAR
Sbjct:    72 GGQDSDAPEAKRLKPMKSSDKNDSLRTEAGTDSGNSSKAADKNATPPEPPKQDYIHVRAR 131

Query:    70 RGQATNSHSLVERVRREKISERMKFLQNL 98
             RGQAT+SHSL ER RREKISERMK LQ+L
Sbjct:   132 RGQATDSHSLAERARREKISERMKILQDL 160

GO:0005634 "nucleus" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9CAA9	BH049_ARATH	No assigned EC number	0.8367	0.4537	0.1008	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00101294 hypothetical protein (562 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
cd00083	60	HLH Helix-loop-helix domain, found in specific DNA	98.26
smart00353	53	HLH helix loop helix domain.	98.09
PF00010	55	HLH: Helix-loop-helix DNA-binding domain only nucl	97.9
KOG1318	411	consensus Helix loop helix transcription factor EB	97.84
KOG4304	250	consensus Transcriptional repressors of the hairy/	96.3
KOG1319	229	consensus bHLHZip transcription factor BIGMAX [Tra	95.98
KOG3561	803	consensus Aryl-hydrocarbon receptor nuclear transl	95.73

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long

Probab=98.26  E-value=9.2e-07  Score=53.62  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=30.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhccCC---cccCC
Q 040760           74 TNSHSLVERVRREKISERMKFLQNLSLAI---EETGR  107 (108)
Q Consensus        74 t~~hSlaER~RRerInErmk~LQ~LVP~~---~K~Dk  107 (108)
                      -..|+++||.||++||+.+..|+.|||.+   .|+||
T Consensus         5 r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k   41 (60)
T cd00083           5 REAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSK   41 (60)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Confidence            35799999999999999999999999999   66664

A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and

>smart00353 HLH helix loop helix domain

Probab=98.09  E-value=3.6e-06  Score=50.44  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccCC---cccCC
Q 040760           78 SLVERVRREKISERMKFLQNLSLAI---EETGR  107 (108)
Q Consensus        78 SlaER~RRerInErmk~LQ~LVP~~---~K~Dk  107 (108)
                      +++||.||++||+.+..|+.|||.+   .|+||
T Consensus         1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k   33 (53)
T smart00353        1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSK   33 (53)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Confidence            4789999999999999999999964   45554

>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt)

Probab=97.90  E-value=9e-06  Score=49.70  Aligned_cols=27  Identities=30%  Similarity=0.407  Sum_probs=26.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCC
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAI  102 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~  102 (108)
                      .|+..||.||.+||+.+..|+.|||.+
T Consensus         4 ~h~~~Er~RR~~i~~~~~~L~~llp~~   30 (55)
T PF00010_consen    4 KHNERERRRRDRINDCFDELRELLPSC   30 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCSSH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            589999999999999999999999997

; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=97.84  E-value=8.5e-06  Score=69.84  Aligned_cols=35  Identities=34%  Similarity=0.456  Sum_probs=30.9

Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHhhhccCCccc
Q 040760           71 GQATNSHSLVERVRREKISERMKFLQNLSLAIEET  105 (108)
Q Consensus        71 g~At~~hSlaER~RRerInErmk~LQ~LVP~~~K~  105 (108)
                      .+-.+.|++.||+||++||.+||.|-.|||.|+--
T Consensus       231 r~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~  265 (411)
T KOG1318|consen  231 RRKRDNHNEVERRRRENINDRIKELGQLIPKCNSE  265 (411)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcc
Confidence            34458899999999999999999999999999643

>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]

Probab=96.30  E-value=0.0022  Score=51.45  Aligned_cols=31  Identities=23%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAIEETG  106 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~~K~D  106 (108)
                      .+-|.||+||.|||+=|..|++|||-+.|.|
T Consensus        35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~   65 (250)
T KOG4304|consen   35 RKPLLEKKRRARINRCLDELKDLIPEALKKD   65 (250)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4679999999999999999999999998876

>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]

Probab=95.98  E-value=0.0058  Score=49.38  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAIEETG  106 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~~K~D  106 (108)
                      .|--|||.||+.|+.-..-||+|||-|.-.|
T Consensus        65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~d   95 (229)
T KOG1319|consen   65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQD   95 (229)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHhcccccccc
Confidence            5888999999999999999999999998766

>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]

Probab=95.73  E-value=0.0069  Score=55.91  Aligned_cols=35  Identities=14%  Similarity=0.283  Sum_probs=32.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhccCCc----ccCCC
Q 040760           74 TNSHSLVERVRREKISERMKFLQNLSLAIE----ETGRS  108 (108)
Q Consensus        74 t~~hSlaER~RRerInErmk~LQ~LVP~~~----K~Dks  108 (108)
                      -.+|+.+||+||++.|.=|..|=+|||.|.    |.||.
T Consensus        21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~   59 (803)
T KOG3561|consen   21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKL   59 (803)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHH
Confidence            578999999999999999999999999998    88873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	108
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	4e-04

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82

 Score = 35.4 bits (82), Expect = 4e-04
 Identities = 8/30 (26%), Positives = 19/30 (63%)

Query: 69 RRGQATNSHSLVERVRREKISERMKFLQNL 98
           RG+   +H+ +E+  R  I++++  L++L
Sbjct: 2  SRGEKRTAHNAIEKRYRSSINDKIIELKDL 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	108
4ati_A	118	MITF, microphthalmia-associated transcription fact	99.07
4h10_A	73	ARYL hydrocarbon receptor nuclear translocator-LI	98.89
1a0a_A	63	BHLH, protein (phosphate system positive regulator	98.78
1an4_A	65	Protein (upstream stimulatory factor); protein-DNA	98.71
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	98.64
4h10_B	71	Circadian locomoter output cycles protein kaput; B	98.55
4f3l_A	361	Mclock, circadian locomoter output cycles protein	98.02
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	97.97
3u5v_A	76	Protein MAX, transcription factor E2-alpha chimer;	97.96
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	97.92
1hlo_A	80	Protein (transcription factor MAX); transcriptiona	97.88
4f3l_B	387	BMAL1B; BHLH, PAS, circadian rhythm proteins, tran	97.85
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	97.33
1mdy_A	68	Protein (MYOD BHLH domain); protein-DNA complex, t	94.9
2ql2_B	60	Neurod1, neurogenic differentiation factor 1; basi	94.44
1p3q_Q	54	VPS9P, vacuolar protein sorting-associated protein	87.78

>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A

Probab=99.07  E-value=6.6e-11  Score=83.60  Aligned_cols=47  Identities=30%  Similarity=0.388  Sum_probs=25.9

Q ss_pred             cccccccccccccCCCcchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760           60 KEEYIHVRARRGQATNSHSLVERVRREKISERMKFLQNLSLAIEETG  106 (108)
Q Consensus        60 ~~~~i~~RakRg~At~~hSlaER~RRerInErmk~LQ~LVP~~~K~D  106 (108)
                      .....+..+++++...+|+++||+||++||++|..|+.|||+|.+.|
T Consensus        14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~   60 (118)
T 4ati_A           14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPD   60 (118)
T ss_dssp             -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----
T ss_pred             CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence            33445688999999999999999999999999999999999997644

>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.89  E-value=1.5e-10  Score=76.68  Aligned_cols=39  Identities=26%  Similarity=0.368  Sum_probs=34.1

Q ss_pred             ccccCCCcchHHHHHHHHHHHHHHHHHhhhccCC----cccCC
Q 040760           69 RRGQATNSHSLVERVRREKISERMKFLQNLSLAI----EETGR  107 (108)
Q Consensus        69 kRg~At~~hSlaER~RRerInErmk~LQ~LVP~~----~K~Dk  107 (108)
                      ++.+....|+++||+||++||+.|..|+.|||.|    .|+||
T Consensus         5 k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldK   47 (73)
T 4h10_A            5 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDK   47 (73)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCH
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccH
Confidence            4455678999999999999999999999999998    47775

>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1

Probab=98.78  E-value=1.6e-09  Score=69.59  Aligned_cols=32  Identities=25%  Similarity=0.280  Sum_probs=29.9

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCcccC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIEETG  106 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K~D  106 (108)
                      .+|.+|||.||++||..|..|+.|||+|.+.|
T Consensus         4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~   35 (63)
T 1a0a_A            4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQ   35 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTS
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHCCCccccc
Confidence            58999999999999999999999999997765

>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1

Probab=98.71  E-value=1.9e-08  Score=63.43  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760           73 ATNSHSLVERVRREKISERMKFLQNLSLAIE  103 (108)
Q Consensus        73 At~~hSlaER~RRerInErmk~LQ~LVP~~~  103 (108)
                      ....|+++||.||++||+.|..|+.|||+|.
T Consensus         5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~   35 (65)
T 1an4_A            5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSS   35 (65)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHhhchHHHHHHHHHHHHHHHHHHHCcCcc
Confidence            3568999999999999999999999999997

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=98.64  E-value=1.3e-08  Score=67.53  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHhhhccCC-cccCC
Q 040760           73 ATNSHSLVERVRREKISERMKFLQNLSLAI-EETGR  107 (108)
Q Consensus        73 At~~hSlaER~RRerInErmk~LQ~LVP~~-~K~Dk  107 (108)
                      ...+|+++||+||++||++|..|+.|||++ .|+||
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~K   41 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNK   41 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCH
Confidence            346899999999999999999999999998 77775

>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}

Probab=98.55  E-value=3.2e-08  Score=65.57  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHhhhccCC-cccCC
Q 040760           74 TNSHSLVERVRREKISERMKFLQNLSLAI-EETGR  107 (108)
Q Consensus        74 t~~hSlaER~RRerInErmk~LQ~LVP~~-~K~Dk  107 (108)
                      -.+|+++||+||++||++|..|+.|||++ .|+||
T Consensus         9 R~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK   43 (71)
T 4h10_B            9 RVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDK   43 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCH
T ss_pred             hhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcH
Confidence            35899999999999999999999999975 48876

>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=98.02  E-value=1.8e-06  Score=66.92  Aligned_cols=37  Identities=16%  Similarity=0.176  Sum_probs=26.4

Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHHHhhhcc-CCcccCC
Q 040760           71 GQATNSHSLVERVRREKISERMKFLQNLSL-AIEETGR  107 (108)
Q Consensus        71 g~At~~hSlaER~RRerInErmk~LQ~LVP-~~~K~Dk  107 (108)
                      .....+|+++||+||++||+.|..|..||| +..|+||
T Consensus        10 ~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk   47 (361)
T 4f3l_A           10 KAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDK   47 (361)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHTCCSSSCCCCH
T ss_pred             chhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCH
Confidence            344568999999999999999999999999 6678887

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.97  E-value=2.9e-06  Score=57.07  Aligned_cols=33  Identities=21%  Similarity=0.415  Sum_probs=29.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCc---ccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIE---ETGR  107 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~---K~Dk  107 (108)
                      ..|+++||.||+.||+.+..|+++||++.   |++|
T Consensus         8 ~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK   43 (88)
T 1nkp_A            8 RTHNVLERQRRNELKRSFFALRDQIPELENNEKAPK   43 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
Confidence            36999999999999999999999999874   6664

>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*

Probab=97.96  E-value=3e-06  Score=56.20  Aligned_cols=33  Identities=24%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCcccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIEETGR  107 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K~Dk  107 (108)
                      ..|++.||.||..||+.+..|+.+||.|.+.||
T Consensus         7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K   39 (76)
T 3u5v_A            7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDK   39 (76)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccc
Confidence            468999999999999999999999998766655

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=97.92  E-value=4.2e-06  Score=54.77  Aligned_cols=33  Identities=27%  Similarity=0.496  Sum_probs=29.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCC--cccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAI--EETGR  107 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~--~K~Dk  107 (108)
                      ..|+++||.||+.||+.+..|+.|||.+  .|++|
T Consensus         4 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK   38 (83)
T 1nkp_B            4 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR   38 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCH
T ss_pred             hHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCH
Confidence            3699999999999999999999999986  55554

>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1

Probab=97.88  E-value=5.9e-06  Score=53.97  Aligned_cols=33  Identities=24%  Similarity=0.477  Sum_probs=29.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCc--ccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIE--ETGR  107 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~--K~Dk  107 (108)
                      ..|+++||.||..||+.+..|+.|||.+.  |.+|
T Consensus        14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK   48 (80)
T 1hlo_A           14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR   48 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCH
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccH
Confidence            47999999999999999999999999873  5543

>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}

Probab=97.85  E-value=3.6e-06  Score=66.31  Aligned_cols=39  Identities=26%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             ccccCCCcchHHHHHHHHHHHHHHHHHhhhcc----CCcccCC
Q 040760           69 RRGQATNSHSLVERVRREKISERMKFLQNLSL----AIEETGR  107 (108)
Q Consensus        69 kRg~At~~hSlaER~RRerInErmk~LQ~LVP----~~~K~Dk  107 (108)
                      |..++.++|+++||+||++||+.|..|..|||    ...|.||
T Consensus         9 ~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk   51 (387)
T 4f3l_B            9 RIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDK   51 (387)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCH
T ss_pred             hhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCH
Confidence            33555789999999999999999999999999    4567776

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=97.33  E-value=0.00019  Score=47.59  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=27.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCCccc
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAIEET  105 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~~K~  105 (108)
                      .|+..||.||..|+..+-.|.++||.+...
T Consensus         4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~   33 (80)
T 1nlw_A            4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDS   33 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCCCSSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            599999999999999999999999977443

>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*

Probab=94.90  E-value=0.022  Score=36.83  Aligned_cols=27  Identities=22%  Similarity=0.295  Sum_probs=25.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCC
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAI  102 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~  102 (108)
                      .|+.-||.|+..||+.+..|+++||..
T Consensus        15 ~aN~rER~R~~~iN~af~~LR~~iP~~   41 (68)
T 1mdy_A           15 AATMRERRRLSKVNEAFETLKRSTSSN   41 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            388999999999999999999999975

>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}

Probab=94.44  E-value=0.047  Score=34.33  Aligned_cols=27  Identities=15%  Similarity=0.167  Sum_probs=24.8

Q ss_pred             chHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760           77 HSLVERVRREKISERMKFLQNLSLAIE  103 (108)
Q Consensus        77 hSlaER~RRerInErmk~LQ~LVP~~~  103 (108)
                      |+.-||.|+..||+-+..|+.+||...
T Consensus         6 ~N~rER~R~~~iN~af~~LR~~lP~~~   32 (60)
T 2ql2_B            6 ANARERNRMHGLNAALDNLRKVVPCYS   32 (60)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHccCCC
Confidence            678899999999999999999999764

>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A

Probab=87.78  E-value=0.5  Score=29.76  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccCCcc
Q 040760           78 SLVERVRREKISERMKFLQNLSLAIEE  104 (108)
Q Consensus        78 SlaER~RRerInErmk~LQ~LVP~~~K  104 (108)
                      .+|+|++|..-.+-++.||.++|+-++
T Consensus         2 ~~a~~i~~~e~~~~~~~L~~MFP~lD~   28 (54)
T 1p3q_Q            2 SLIKKIEENERKDTLNTLQNMFPDMDP   28 (54)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHcccCCH
Confidence            468999999999999999999999775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	108
d1a0aa_	63	Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce	98.45
d1an4a_	65	Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960	98.37
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1mdya_	68	Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10	98.25
d1nkpb_	83	Max protein {Human (Homo sapiens) [TaxId: 9606]}	98.05
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	97.9
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	97.47
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	89.87

>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Pho4 B/HLH domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.45  E-value=3e-08  Score=61.16  Aligned_cols=28  Identities=29%  Similarity=0.368  Sum_probs=26.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAI  102 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~  102 (108)
                      ..|+++||.||++||+.+..|+.|||+|
T Consensus         4 ~~H~~~Er~RR~~in~~~~~L~~llP~~   31 (63)
T d1a0aa_           4 ESHKHAEQARRNRLAVALHELASLIPAE   31 (63)
T ss_dssp             TGGGGGTHHHHHHHHHHHHHHHHTSCHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence            4699999999999999999999999975

>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Usf B/HLH domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.8e-07  Score=57.84  Aligned_cols=29  Identities=31%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIE  103 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~  103 (108)
                      ..|+.+||.||++||+.+..|+.|||.+.
T Consensus         7 ~~H~~~Er~RR~~in~~f~~L~~lvP~~~   35 (65)
T d1an4a_           7 AQHNEVERRRRDKINNWIVQLSKIIPDSS   35 (65)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccc
Confidence            46999999999999999999999999875

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.4e-07  Score=60.18  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCc-ccCC
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIE-ETGR  107 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~-K~Dk  107 (108)
                      ..|+.+||.||++||+.+..|+.|||+++ |+||
T Consensus         8 ~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K   41 (80)
T d1am9a_           8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNK   41 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence            46999999999999999999999999975 6665

>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myod B/HLH domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.4e-07  Score=58.10  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=27.0

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCc
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIE  103 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~  103 (108)
                      ..|++.||.||++||+.+..|+.|||++.
T Consensus        14 ~~hn~~Er~Rr~~in~~~~~L~~llP~~~   42 (68)
T d1mdya_          14 KAATMRERRRLSKVNEAFETLKRSTSSNP   42 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSCSCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence            36999999999999999999999999975

>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=8.8e-07  Score=56.31  Aligned_cols=32  Identities=28%  Similarity=0.514  Sum_probs=28.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHhhhccCC--cccCC
Q 040760           76 SHSLVERVRREKISERMKFLQNLSLAI--EETGR  107 (108)
Q Consensus        76 ~hSlaER~RRerInErmk~LQ~LVP~~--~K~Dk  107 (108)
                      .|+.+||.||++||+.+..|++|||++  .|++|
T Consensus         5 ~Hn~~Er~RR~~in~~f~~L~~llP~~~~~k~sK   38 (83)
T d1nkpb_           5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASR   38 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence            699999999999999999999999976  34443

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.7e-06  Score=54.56  Aligned_cols=30  Identities=20%  Similarity=0.286  Sum_probs=27.3

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCcc
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIEE  104 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K  104 (108)
                      ..|+..||.||++||+.+..|..|||++..
T Consensus         3 ~~Hn~~Er~RR~~in~~f~~L~~llP~~~~   32 (79)
T d1nlwa_           3 STHNEMEKNRRAHLRLSLEKLKGLVPLGPD   32 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSSCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCccCCC
Confidence            369999999999999999999999998753

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=3e-06  Score=54.28  Aligned_cols=30  Identities=23%  Similarity=0.434  Sum_probs=27.4

Q ss_pred             CcchHHHHHHHHHHHHHHHHHhhhccCCcc
Q 040760           75 NSHSLVERVRREKISERMKFLQNLSLAIEE  104 (108)
Q Consensus        75 ~~hSlaER~RRerInErmk~LQ~LVP~~~K  104 (108)
                      ..|+.+||.||++||+.+..|.+|||++..
T Consensus         8 ~~Hn~~Er~RR~~in~~f~~Lr~llP~~~~   37 (88)
T d1nkpa_           8 RTHNVLERQRRNELKRSFFALRDQIPELEN   37 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCGGGTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            369999999999999999999999998753

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=1.3e-05  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.445  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhhhccCCc-ccCCC
Q 040760           85 REKISERMKFLQNLSLAIE-ETGRS  108 (108)
Q Consensus        85 RerInErmk~LQ~LVP~~~-K~Dks  108 (108)
                      |++||+++..|++|||+|+ |+||.
T Consensus         1 R~~in~~f~~L~~lvP~~~~K~~Ka   25 (61)
T d1uklc_           1 RSSINDKIIELKDLVMGTDAKMHKS   25 (61)
T ss_dssp             CCCHHHHHHHHHHHHSCSSCCCCTT
T ss_pred             CcHHHHHHHHHHhhCCCCCCcccHH
Confidence            6789999999999999986 88873

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.87  E-value=0.16  Score=30.52  Aligned_cols=27  Identities=19%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             hHHHHHHHHHHHHHHHHHhhhccCCcc
Q 040760           78 SLVERVRREKISERMKFLQNLSLAIEE  104 (108)
Q Consensus        78 SlaER~RRerInErmk~LQ~LVP~~~K  104 (108)
                      +|++|++|+...+-|++||+++|+-++
T Consensus         2 ~~i~~i~~~e~~e~~~~Lk~MFP~~D~   28 (54)
T d1mn3a_           2 SLIKKIEENERKDTLNTLQNMFPDMDP   28 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTSCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHCCCCCH
Confidence            689999999999999999999999765