Citrus Sinensis ID: 040761

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
Protein Sequence
MASSGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccHHHccccccccccccccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
massgsaagtgspcgacKFLRRKCasdcifapyfcseqgpaRFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMdtrsienhhqwqgnctitgvpsfpssypgnyanpispqsslesadchnndgmnmqeiesrsdefsfqgyphnyrkrpynntdlGELQALALRMMRN
Flexible Loop (DISEMBL)
massgsaagtgspcgACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQGYPHnyrkrpynntdLGELQALALRMMRN
Low Complexity Region (SEG)
MassgsaagtgspcgaCKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFalqqqvaclqaqlmqVKAQLAHNMMDTRSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN
Disordered region (IsUnstruct)
*************CGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCTITGVPS**************************************************************************
Disordered Region (DISOPRED)
****************CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQL***************************************************************************************LGELQALALRMMR*
Disordered Region (DISEMBL)
************PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN
Disordered Region (DISPRO)
***********SPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTR************************************************MNMQEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHxxxxxxxxxxxxxxxxxxxxxLAHNMMDTRSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	215	2.2.26 [Sep-21-2011]
Q9SLB7	245	LOB domain-containing pro	yes	no	0.981	0.861	0.578	2e-64
Q9M2J7	218	LOB domain-containing pro	no	no	0.572	0.564	0.656	2e-44
Q9SLB6	244	LOB domain-containing pro	no	no	0.576	0.508	0.642	1e-42
Q9SRV3	273	LOB domain-containing pro	no	no	0.479	0.377	0.757	1e-40
O81322	220	LOB domain-containing pro	no	no	0.520	0.509	0.660	1e-39
O22131	262	LOB domain-containing pro	no	no	0.465	0.381	0.77	8e-39
Q9SJW5	188	LOB domain-containing pro	no	no	0.493	0.563	0.641	9e-38
Q9LHS8	177	LOB domain-containing pro	no	no	0.697	0.847	0.5	1e-35
O81323	228	LOB domain-containing pro	no	no	0.465	0.438	0.7	4e-35
O22132	191	LOB domain-containing pro	no	no	0.739	0.832	0.470	3e-34

>sp|Q9SLB7|LBD16_ARATH LOB domain-containing protein 16 OS=Arabidopsis thaliana GN=LBD16 PE=2 SV=1

 Score =  245 bits (625), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/249 (57%), Positives = 171/249 (68%), Gaps = 38/249 (15%)

Query: 1   MASSG--SAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKL 58
           MASSG  + AGTGSPCGACKFLRRKCASDCIFAPYF SEQG ARFAAIHKVFGASNVSKL
Sbjct: 1   MASSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKL 60

Query: 59  LLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118
           LL+VP+ DRCEAVVTIAYEAQAR+ DPVYGCV+HIFALQQQVA LQ+Q+MQ+KAQ+A + 
Sbjct: 61  LLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQ 120

Query: 119 M----DTR-SIENHHQ---WQGNCTITGVPSFPSSYPGNY------------ANPISPQS 158
                D R S E+ +Q   WQ     T V    S+Y   Y             NP+SPQS
Sbjct: 121 TSAAGDLRHSSESTNQFMTWQQ----TSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQS 176

Query: 159 SLESADCHNNDGM----NMQEIESRS-------DEFSF-QGYPHNYRKRPYNNTDLGELQ 206
           SLE +  + +  +    N++E   ++       D   F +GYP+  R   Y ++DLGELQ
Sbjct: 177 SLEESFSNTSSDVTTTANVRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQ 236

Query: 207 ALALRMMRN 215
           ALALRMM+N
Sbjct: 237 ALALRMMKN 245

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2J7|LBD29_ARATH LOB domain-containing protein 29 OS=Arabidopsis thaliana GN=LBD29 PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/125 (65%), Positives = 102/125 (81%), Gaps = 2/125 (1%)

Query: 13  PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVV 72
           PCGACKFLRRKCA  C+FAPYFC EQG + FAAIHKVFGASN SKLL H+P++DRCEA +
Sbjct: 11  PCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAI 70

Query: 73  TIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMM--DTRSIENHHQW 130
           TI+YEAQAR++DP+YGCV+HIFALQQQV  LQA+L  +K Q A +M+  D+ + EN + +
Sbjct: 71  TISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSENPNSY 130

Query: 131 QGNCT 135
            G+ T
Sbjct: 131 YGDTT 135

Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLB6|LBD17_ARATH LOB domain-containing protein 17 OS=Arabidopsis thaliana GN=LBD17 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 81/126 (64%), Positives = 97/126 (76%), Gaps = 2/126 (1%)

Query: 8   AGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADR 67
            G+GSPCGACKFLRR+C   C+FAPYFC EQG + FAAIH+VFGASN SKLL H+P+ DR
Sbjct: 2   TGSGSPCGACKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDR 61

Query: 68  CEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMM--DTRSIE 125
            EA  TI YEAQAR +DP+YGCV+HIF+LQQQV  LQ QL  +K Q   +MM  D+ SIE
Sbjct: 62  REAATTIYYEAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIE 121

Query: 126 NHHQWQ 131
           N + +Q
Sbjct: 122 NPNYYQ 127

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1

 Score =  166 bits (420), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 89/103 (86%)

Query: 12  SPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAV 71
           SPCGACKFLRRKC S CIFAP+F S+QG ARFAA+HKVFGASNVSKLL H+PV  R +AV
Sbjct: 50  SPCGACKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAV 109

Query: 72  VTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQL 114
           VTI+YEAQAR+ DPVYGCV+ I ALQQQVA LQA+L  V++QL
Sbjct: 110 VTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152

Arabidopsis thaliana (taxid: 3702)

>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2

 Score =  163 bits (412), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 74/112 (66%), Positives = 88/112 (78%)

Query: 4   SGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVP 63
           SGS  G G PCGACKFLRRKC +DC+FAPYF S +G + F A+HKVFGASN SKLL+ +P
Sbjct: 2   SGSTTGCGGPCGACKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIP 61

Query: 64  VADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA 115
            + R +AVVT+ YEA AR+RDPVYGCV HIFALQ QV  LQA+L  V+ QL+
Sbjct: 62  ASRRLDAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLS 113

Arabidopsis thaliana (taxid: 3702)

>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2

 Score =  160 bits (404), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 85/100 (85%)

Query: 16  ACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIA 75
           ACKFLRRKC   CIFAPYF SEQG A FAA+HKVFGASNVSKLLLH+PV  R +AVVTI 
Sbjct: 40  ACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTIC 99

Query: 76  YEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA 115
           YEAQARIRDP+YGCVAHIFALQQQV  LQA++  ++A LA
Sbjct: 100 YEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJW5|LBD14_ARATH LOB domain-containing protein 14 OS=Arabidopsis thaliana GN=LBD14 PE=2 SV=1

 Score =  156 bits (395), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 68/106 (64%), Positives = 85/106 (80%)

Query: 8   AGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADR 67
            G GSPCG CKFLRRKC   C+FAPYFC E+G + FAAIHKVFGASN SKL+ H+P  DR
Sbjct: 2   GGLGSPCGGCKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDR 61

Query: 68  CEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQ 113
           C+AV TI+YEA +R+ DP+YGCV+ IF+LQQQV  LQAQ++ ++ +
Sbjct: 62  CDAVRTISYEAHSRLHDPIYGCVSQIFSLQQQVVSLQAQVVLLREE 107

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LHS8|LBD33_ARATH LOB domain-containing protein 33 OS=Arabidopsis thaliana GN=LBD33 PE=2 SV=1

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 99/160 (61%), Gaps = 10/160 (6%)

Query: 8   AGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADR 67
           A  GS CGACKFLRRKC  DC+F+PYF  EQ  + FAA+HKVFGASNVSK LLH+P   R
Sbjct: 2   ASHGSSCGACKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQR 61

Query: 68  CEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENH 127
             A +TI+YEA +R+RDPVYGCVAHIFAL QQV  LQ ++  + +Q     M   S  N 
Sbjct: 62  NIAAITISYEALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQ-----MKNFSYSN- 115

Query: 128 HQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHN 167
              Q    +  +P F +       N +  +S L +AD  N
Sbjct: 116 ---QNGSQLNNIPEFVNQMTMATTNFVD-ESVLNNADGRN 151

Arabidopsis thaliana (taxid: 3702)

>sp|O81323|LBD30_ARATH LOB domain-containing protein 30 OS=Arabidopsis thaliana GN=LBD30 PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 70/100 (70%), Positives = 82/100 (82%)

Query: 16  ACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIA 75
           ACKFLRRKC + CIFAPYF SEQG A FAA+HKVFGASNVSKLL HVP   R +AVV+I 
Sbjct: 20  ACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSIC 79

Query: 76  YEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA 115
           +EAQAR+RDP+YGCV+HI +LQQQV  LQ +L  ++A LA
Sbjct: 80  FEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

Arabidopsis thaliana (taxid: 3702)

>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/168 (47%), Positives = 105/168 (62%), Gaps = 9/168 (5%)

Query: 16  ACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIA 75
           ACKFLRRKC   C+FAPYF +EQG ARFAA+HKVFGASN SK+LL +P+  R +AVVT+ 
Sbjct: 19  ACKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLC 78

Query: 76  YEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCT 135
           YEA ARIRDPVYG V H+F+LQ QV  LQA+L  V+A+L  + +    +++  Q Q    
Sbjct: 79  YEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARL--STIQRFPLQSPQQMQP--- 133

Query: 136 ITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEF 183
               PSF  ++   YA   S   S+   +    DG    + +  + +F
Sbjct: 134 ----PSFDPAHNNEYAMEPSNLDSVWGEEHLLQDGTGDGDFQELASQF 177

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
224082772	213	predicted protein [Populus trichocarpa]	0.958	0.967	0.788	7e-86
255560007	212	LOB domain-containing protein, putative	0.958	0.971	0.751	1e-84
224066271	213	predicted protein [Populus trichocarpa]	0.953	0.962	0.757	8e-83
356572251	213	PREDICTED: LOB domain-containing protein	0.911	0.920	0.751	2e-80
225437836	195	PREDICTED: LOB domain-containing protein	0.902	0.994	0.775	5e-80
356504999	213	PREDICTED: LOB domain-containing protein	0.967	0.976	0.706	6e-80
388506032	212	unknown [Lotus japonicus]	0.893	0.905	0.685	1e-65
356545835	217	PREDICTED: LOB domain-containing protein	0.888	0.880	0.651	5e-64
18405967	245	LOB domain-containing protein 16 [Arabid	0.981	0.861	0.578	1e-62
356536817	213	PREDICTED: LOB domain-containing protein	0.893	0.901	0.646	2e-62

>gi|224082772|ref|XP_002306833.1| predicted protein [Populus trichocarpa] gi|222856282|gb|EEE93829.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (825), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 191/222 (86%), Gaps = 16/222 (7%)

Query: 1   MASSGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL 60
           MASSG+  GTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL
Sbjct: 1   MASSGT--GTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL 58

Query: 61  HVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMD 120
           HVPVA+RCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLA N++D
Sbjct: 59  HVPVAERCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAQNLID 118

Query: 121 TRSI--EN-HHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNND----GMNM 173
           +  I  EN HHQWQGN  I+GVPSFP ++P NY NPISPQSSL+S D  +N+     MNM
Sbjct: 119 SPRINAENIHHQWQGN-NISGVPSFP-THP-NYINPISPQSSLDSVDLISNNIDRGMMNM 175

Query: 174 QEIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN 215
           Q+I+SR +EF+FQ       KRP  N+DLGELQALALRMMRN
Sbjct: 176 QDIQSR-EEFAFQSRAK--VKRPC-NSDLGELQALALRMMRN 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560007|ref|XP_002521022.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539859|gb|EEF41439.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  318 bits (814), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 166/221 (75%), Positives = 189/221 (85%), Gaps = 15/221 (6%)

Query: 1   MASSGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL 60
           MASSGS  GTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL
Sbjct: 1   MASSGS--GTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLL 58

Query: 61  HVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMD 120
           HVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIF+LQQQVACLQAQLMQVKAQLA +M+D
Sbjct: 59  HVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQLAQSMVD 118

Query: 121 -TRSIENHHQWQGNCTITGVPS----FPSSYPGNYANPISPQSSLESADCHNNDG-MNMQ 174
            +R++EN  QWQGN  I G+PS      ++Y   Y NPISPQSSLES + HN DG ++MQ
Sbjct: 119 SSRNMEN--QWQGN-NICGMPSSSIAISNNYAAIYTNPISPQSSLESVE-HNFDGVISMQ 174

Query: 175 EIESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN 215
           +I+S  ++F++Q    + +KRPYN+++ GELQ LALRMMRN
Sbjct: 175 DIQSSREDFAYQS---SAKKRPYNSSEWGELQELALRMMRN 212

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066271|ref|XP_002302057.1| predicted protein [Populus trichocarpa] gi|222843783|gb|EEE81330.1| predicted protein [Populus trichocarpa]

 Score =  311 bits (798), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 166/219 (75%), Positives = 183/219 (83%), Gaps = 14/219 (6%)

Query: 4   SGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVP 63
           + S  GTGSPCGACKFLRRKCASDCIFAPYFCSEQG ARFAAIHKVFGASNVSKLLLHVP
Sbjct: 2   ASSVTGTGSPCGACKFLRRKCASDCIFAPYFCSEQGTARFAAIHKVFGASNVSKLLLHVP 61

Query: 64  VADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTR- 122
           VADR EAVVTIAYEAQARIRDPVYGCVAHIF+LQQQVACLQAQLMQVKAQLA N++D+  
Sbjct: 62  VADRYEAVVTIAYEAQARIRDPVYGCVAHIFSLQQQVACLQAQLMQVKAQLAQNLIDSTR 121

Query: 123 -SIEN-HHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNND----GMNMQEI 176
            +IEN HHQWQGN  I+GV SFPS     Y NPISPQSSL+S D +N++     M+MQ+I
Sbjct: 122 INIENTHHQWQGN-NISGVSSFPSYQ--TYINPISPQSSLDSVDLNNSNIDHGMMDMQDI 178

Query: 177 ESRSDEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN 215
           +S  +EF+FQ       KRPY N+DLGELQALALRMMRN
Sbjct: 179 KS-GEEFAFQSCAK--VKRPY-NSDLGELQALALRMMRN 213

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572251|ref|XP_003554283.1| PREDICTED: LOB domain-containing protein 16-like [Glycine max]

 Score =  303 bits (777), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 173/205 (84%), Gaps = 9/205 (4%)

Query: 13  PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVV 72
           PCGACKFLRRKCA+DCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLH+P  DRCEAVV
Sbjct: 16  PCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVV 75

Query: 73  TIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQG 132
           TIAYEAQARIRDPVYGCV+HIFALQQQVACLQAQLMQVKAQLA N++++R+IE++HQW G
Sbjct: 76  TIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLVESRNIESNHQWTG 135

Query: 133 -NCTITGVPSFPSSYPGNYANPISPQSSLESADCHN-NDGMNMQEIESRSDEFSFQGYPH 190
            N +++G P      P  Y NPISPQSSLES D  + NDGM+MQ+I+SR D F  Q    
Sbjct: 136 NNNSVSGQPMNHPFCP-TYMNPISPQSSLESIDHSSINDGMSMQDIQSRED-FQIQA--- 190

Query: 191 NYRKRPYNNTDLGELQALALRMMRN 215
             ++RPYNN DLGELQ LALRMMRN
Sbjct: 191 --KERPYNNNDLGELQELALRMMRN 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437836|ref|XP_002263559.1| PREDICTED: LOB domain-containing protein 16 [Vitis vinifera] gi|297744118|emb|CBI37088.3| unnamed protein product [Vitis vinifera]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 162/209 (77%), Positives = 179/209 (85%), Gaps = 15/209 (7%)

Query: 7   AAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVAD 66
           A+ +GSPCGACKFLRRKCA+DC+FAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVAD
Sbjct: 2   ASASGSPCGACKFLRRKCAADCVFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVAD 61

Query: 67  RCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIEN 126
           RCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQ+KAQLA+N   T ++EN
Sbjct: 62  RCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQLKAQLANN---TGNLEN 118

Query: 127 HHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEFSFQ 186
             QWQGN  ++G PSF  ++PG Y N +SPQ SLE  D HN+DGM MQ+I+SR DEFSFQ
Sbjct: 119 --QWQGN--VSGAPSF-QNFPG-YMNSVSPQCSLELID-HNSDGMTMQDIQSR-DEFSFQ 170

Query: 187 GYPHNYRKRPYNNTDLGELQALALRMMRN 215
                 RKRP +N DLGELQ LALRMMRN
Sbjct: 171 TCS---RKRPPHN-DLGELQELALRMMRN 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504999|ref|XP_003521280.1| PREDICTED: LOB domain-containing protein 16-like [Glycine max]

 Score =  302 bits (773), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 152/215 (70%), Positives = 172/215 (80%), Gaps = 7/215 (3%)

Query: 2   ASSGSAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLH 61
           + +G + G+GSPCGACKFLRR+CASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLH
Sbjct: 5   SGNGVSNGSGSPCGACKFLRRRCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLH 64

Query: 62  VPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDT 121
           +P  DRCEAVVTI YEAQARIRDPVYGCV+HIFALQQQVA LQAQLMQVKAQL  N++++
Sbjct: 65  IPAHDRCEAVVTITYEAQARIRDPVYGCVSHIFALQQQVARLQAQLMQVKAQLTQNLVES 124

Query: 122 RSIENHHQWQGNCTITGVPSFPSSYPGNYANPISPQSSLESADCHN-NDGMNMQEIESRS 180
           R+IEN+H  QGN            +   Y NPISPQSSLES D  + NDGM+MQ+I+SR 
Sbjct: 125 RNIENNHHLQGNNNNVTGQLMNHPFCPTYMNPISPQSSLESIDHSSINDGMSMQDIQSRE 184

Query: 181 DEFSFQGYPHNYRKRPYNNTDLGELQALALRMMRN 215
           D F  Q      ++RPYNN DLGELQ LALRMMRN
Sbjct: 185 D-FQIQA-----KERPYNNNDLGELQELALRMMRN 213

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506032|gb|AFK41082.1| unknown [Lotus japonicus]

 Score =  255 bits (651), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/210 (68%), Positives = 160/210 (76%), Gaps = 18/210 (8%)

Query: 13  PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVV 72
           PCGACKFLRRKCASDCIFAPYFCSEQG A FAAIHKVFGASNVSK+LLH+P  DRCEAV 
Sbjct: 14  PCGACKFLRRKCASDCIFAPYFCSEQGQANFAAIHKVFGASNVSKMLLHIPARDRCEAVF 73

Query: 73  TIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMD-TRSIENHHQWQ 131
           TIAYEAQAR+RDPVYGCV+HIFALQQQV CLQAQLMQ KA LA N+MD +R++ N  QW 
Sbjct: 74  TIAYEAQARVRDPVYGCVSHIFALQQQVGCLQAQLMQAKALLAQNLMDSSRNLGN--QWS 131

Query: 132 GNCTITGVP---SFPSSYPGNYANPISPQSSLESADCHN-NDGM--NMQEIESRSDEFSF 185
           GN  + G P    F S+Y  N   PISPQSSLES D  + NDGM  NMQ+I+SR D FS 
Sbjct: 132 GN--VAGQPPLNQFCSTYTMN--PPISPQSSLESIDYSSINDGMSCNMQDIQSRED-FSS 186

Query: 186 QGYPHNYRKRPYNNTDLGELQALALRMMRN 215
           Q      + R  +N DL ELQ LA +MMRN
Sbjct: 187 QACS---KIRSCSN-DLSELQELAFKMMRN 212

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545835|ref|XP_003541339.1| PREDICTED: LOB domain-containing protein 16-like [Glycine max]

 Score =  249 bits (636), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 131/201 (65%), Positives = 155/201 (77%), Gaps = 10/201 (4%)

Query: 16  ACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIA 75
           ACKFLRRKCA+DCIFAPYFCSEQG ARFAAIHKVFGASNVSKLLL +P   R EA++T+A
Sbjct: 24  ACKFLRRKCAADCIFAPYFCSEQGAARFAAIHKVFGASNVSKLLLRIPAHQRFEAMLTLA 83

Query: 76  YEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCT 135
           YEAQAR+RDPVYGCV+HIF LQQQVACLQAQ+MQ+KAQL  N M++R++ENH    G   
Sbjct: 84  YEAQARVRDPVYGCVSHIFTLQQQVACLQAQVMQMKAQLDQNQMESRNLENH----GPDN 139

Query: 136 ITGVPSFPSSYPGNYANPISPQSSLESADCHN-NDGMNMQEIESRSDEFSFQGYPHNYRK 194
           +   P  P  +     NP SPQSSL+S D  + NDGM+M++++ R D FS Q    N++K
Sbjct: 140 VIRQPFNPFCFTS-MNNPTSPQSSLDSIDYSSINDGMSMRDVQRRED-FSLQAC--NFKK 195

Query: 195 RPYNNTDLGELQALALRMMRN 215
           R YNN DL ELQ LALRMMRN
Sbjct: 196 RSYNN-DLDELQELALRMMRN 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405967|ref|NP_565973.1| LOB domain-containing protein 16 [Arabidopsis thaliana] gi|29428045|sp|Q9SLB7.1|LBD16_ARATH RecName: Full=LOB domain-containing protein 16; AltName: Full=ASYMMETRIC LEAVES 2-like protein 18; Short=AS2-like protein 18 gi|13569546|gb|AAK31143.1|AF345339_1 unknown [Arabidopsis thaliana] gi|15294286|gb|AAK95320.1|AF410334_1 At2g42430/MHK10.15 [Arabidopsis thaliana] gi|17227162|gb|AAL38035.1|AF447890_1 LOB DOMAIN 16 [Arabidopsis thaliana] gi|4567314|gb|AAD23725.1| expressed protein [Arabidopsis thaliana] gi|23507799|gb|AAN38703.1| At2g42430/MHK10.15 [Arabidopsis thaliana] gi|110740350|dbj|BAF02070.1| hypothetical protein [Arabidopsis thaliana] gi|219807112|dbj|BAH10562.1| ASYMMETRIC LEAVES2-like 18 protein [Arabidopsis thaliana] gi|330255025|gb|AEC10119.1| LOB domain-containing protein 16 [Arabidopsis thaliana]

 Score =  245 bits (625), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 144/249 (57%), Positives = 171/249 (68%), Gaps = 38/249 (15%)

Query: 1   MASSG--SAAGTGSPCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKL 58
           MASSG  + AGTGSPCGACKFLRRKCASDCIFAPYF SEQG ARFAAIHKVFGASNVSKL
Sbjct: 1   MASSGNGTTAGTGSPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKL 60

Query: 59  LLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNM 118
           LL+VP+ DRCEAVVTIAYEAQAR+ DPVYGCV+HIFALQQQVA LQ+Q+MQ+KAQ+A + 
Sbjct: 61  LLNVPIHDRCEAVVTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQ 120

Query: 119 M----DTR-SIENHHQ---WQGNCTITGVPSFPSSYPGNY------------ANPISPQS 158
                D R S E+ +Q   WQ     T V    S+Y   Y             NP+SPQS
Sbjct: 121 TSAAGDLRHSSESTNQFMTWQQ----TSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQS 176

Query: 159 SLESADCHNNDGM----NMQEIESRS-------DEFSF-QGYPHNYRKRPYNNTDLGELQ 206
           SLE +  + +  +    N++E   ++       D   F +GYP+  R   Y ++DLGELQ
Sbjct: 177 SLEESFSNTSSDVTTTANVRETHHQTGGGVYGHDGIGFHEGYPNKKRSVSYCSSDLGELQ 236

Query: 207 ALALRMMRN 215
           ALALRMM+N
Sbjct: 237 ALALRMMKN 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536817|ref|XP_003536930.1| PREDICTED: LOB domain-containing protein 16-like [Glycine max]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 130/201 (64%), Positives = 153/201 (76%), Gaps = 9/201 (4%)

Query: 16  ACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIA 75
           ACKFLRRKC +DCIFAPYFCSEQG A+FAAIHKVFGASNVSKLLL +P   R EA++TIA
Sbjct: 19  ACKFLRRKCVTDCIFAPYFCSEQGAAKFAAIHKVFGASNVSKLLLRIPAHGRFEAILTIA 78

Query: 76  YEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMMDTRSIENHHQWQGNCT 135
           YEAQAR+RDPVYGCV+HIFALQQQVACLQAQ+MQ+KAQL  N M+ R+ ENH  W  N  
Sbjct: 79  YEAQARLRDPVYGCVSHIFALQQQVACLQAQVMQMKAQLDQNHMEPRNFENH--WSENVA 136

Query: 136 ITGVPSFPSSYPGNYANPISPQSSLESADCHN-NDGMNMQEIESRSDEFSFQGYPHNYRK 194
            +  P  P+S      N ISPQSSL+S    + NDGM+M +++S  +E+ F     N +K
Sbjct: 137 QSFNPFCPTSMN----NLISPQSSLDSLGYSSINDGMSMLDVQSSREEY-FALQACNSKK 191

Query: 195 RPYNNTDLGELQALALRMMRN 215
           R YNN DLGELQ LALRM+RN
Sbjct: 192 RSYNN-DLGELQELALRMIRN 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	215
TAIR|locus:2053807	245	LBD16 "lateral organ boundarie	0.683	0.6	0.595	7.7e-50
TAIR|locus:2085420	218	LBD29 "lateral organ boundarie	0.553	0.545	0.561	3.6e-34
TAIR|locus:2053813	244	ASL15 "ASYMMETRIC LEAVES 2-lik	0.534	0.471	0.555	4.9e-33
TAIR|locus:2050951	262	LBD18 "LOB domain-containing p	0.460	0.377	0.676	4.2e-31
TAIR|locus:2079354	273	LBD20 "LOB domain-containing p	0.851	0.670	0.415	3.8e-30
TAIR|locus:2126881	228	JLO "JAGGED LATERAL ORGANS" [A	0.460	0.434	0.616	3.9e-28
TAIR|locus:2050862	191	LBD19 "LOB domain-containing p	0.734	0.827	0.419	6.4e-28
TAIR|locus:2042501	188	LBD14 "LOB domain-containing p	0.362	0.414	0.679	2.2e-27
TAIR|locus:2126866	220	LBD31 "LOB domain-containing p	0.460	0.45	0.565	3.5e-27
TAIR|locus:2152820	177	LBD33 "LOB domain-containing p	0.697	0.847	0.435	3.2e-26

TAIR|locus:2053807 LBD16 "lateral organ boundaries-domain 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 412 (150.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 97/163 (59%), Positives = 108/163 (66%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKCASDCIFAPYF SEQG ARFAAIHKVFGASNVSKLLL+VP+ DRCEAVVTIAY
Sbjct:    19 CKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAVVTIAY 78

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLA-HNMM---DTR-SIENHHQ-- 129
             EAQAR+ DPVYGCV+HIF               +KAQ+A H      D R S E+ +Q  
Sbjct:    79 EAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAAGDLRHSSESTNQFM 138

Query:   130 -WQGNCT--ITGVPSFPSS----YPG--NYANPISPQSSLESA 163
              WQ      I    S P +    Y G  N  NP+SPQSSLE +
Sbjct:   139 TWQQTSVSPIGSAYSTPYNHHQPYYGHVNPNNPVSPQSSLEES 181

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2085420 LBD29 "lateral organ boundaries-domain 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 68/121 (56%), Positives = 87/121 (71%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKCA  C+FAPYFC EQG + FAAIHKVFGASN SKLL H+P++DRCEA +TI+Y
Sbjct:    15 CKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAAITISY 74

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLAHNMM--DTRSIENHHQWQGNC 134
             EAQAR++DP+YGCV+HIF               +K Q A +M+  D+ + EN + + G+ 
Sbjct:    75 EAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQSMIFADSPTSENPNSYYGDT 134

Query:   135 T 135
             T
Sbjct:   135 T 135

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2053813 ASL15 "ASYMMETRIC LEAVES 2-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 4.9e-33, Sum P(2) = 4.9e-33
 Identities = 65/117 (55%), Positives = 79/117 (67%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRR+C   C+FAPYFC EQG + FAAIH+VFGASN SKLL H+P+ DR EA  TI Y
Sbjct:    11 CKFLRRRCVKGCVFAPYFCHEQGASHFAAIHQVFGASNASKLLSHLPMEDRREAATTIYY 70

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLAHNMM--DTRSIENHHQWQ 131
             EAQAR +DP+YGCV+HIF               +K Q   +MM  D+ SIEN + +Q
Sbjct:    71 EAQARRQDPIYGCVSHIFSLQQQVVNLQTQLEILKQQATQSMMAIDSPSIENPNYYQ 127

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050951 LBD18 "LOB domain-containing protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/99 (67%), Positives = 73/99 (73%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC   CIFAPYF SEQG A FAA+HKVFGASNVSKLLLH+PV  R +AVVTI Y
Sbjct:    41 CKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRRSDAVVTICY 100

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLA 115
             EAQARIRDP+YGCVAHIF               ++A LA
Sbjct:   101 EAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLA 139

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010311 "lateral root formation" evidence=IMP

TAIR|locus:2079354 LBD20 "LOB domain-containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
 Identities = 79/190 (41%), Positives = 107/190 (56%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC S CIFAP+F S+QG ARFAA+HKVFGASNVSKLL H+PV  R +AVVTI+Y
Sbjct:    55 CKFLRRKCVSGCIFAPHFGSDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISY 114

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLAHN---MMDTRSIENHHQWQGN 133
             EAQAR+ DPVYGCV+ I                V++QL ++   M +    + HHQ Q  
Sbjct:   115 EAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQ 174

Query:   134 CTITGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSD-EFSFQGYP-HN 191
               +  V   P     + A+     +++ S     +      ++ + ++ E S Q  P H 
Sbjct:   175 QLV--VMQQPEYSNNSSASTTLAGAAMNSFTMTADAAAVSYDVMAPTNLEHSLQPMPPHQ 232

Query:   192 YRKRPYNNTD 201
              R+  Y + D
Sbjct:   233 QRRGDYQHED 242

GO:0005634 "nucleus" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

GO:1900150 "regulation of defense response to fungus" evidence=IMP

TAIR|locus:2126881 JLO "JAGGED LATERAL ORGANS" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 61/99 (61%), Positives = 71/99 (71%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC + CIFAPYF SEQG A FAA+HKVFGASNVSKLL HVP   R +AVV+I +
Sbjct:    21 CKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLHHVPEHKRPDAVVSICF 80

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLA 115
             EAQAR+RDP+YGCV+HI                ++A LA
Sbjct:    81 EAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQAHLA 119

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 70/167 (41%), Positives = 94/167 (56%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC   C+FAPYF +EQG ARFAA+HKVFGASN SK+LL +P+  R +AVVT+ Y
Sbjct:    20 CKFLRRKCVKGCVFAPYFDAEQGTARFAAVHKVFGASNASKMLLRLPLHKRLDAVVTLCY 79

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLAHNMMDTRSIENHHQWQGNCTI 136
             EA ARIRDPVYG V H+F               V+A+L+   +    +++  Q Q     
Sbjct:    80 EAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLS--TIQRFPLQSPQQMQP---- 133

Query:   137 TGVPSFPSSYPGNYANPISPQSSLESADCHNNDGMNMQEIESRSDEF 183
                PSF  ++   YA   S   S+   +    DG    + +  + +F
Sbjct:   134 ---PSFDPAHNNEYAMEPSNLDSVWGEEHLLQDGTGDGDFQELASQF 177

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2042501 LBD14 "LOB domain-containing protein 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 53/78 (67%), Positives = 64/78 (82%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC   C+FAPYFC E+G + FAAIHKVFGASN SKL+ H+P  DRC+AV TI+Y
Sbjct:    11 CKFLRRKCVEGCVFAPYFCYEEGSSNFAAIHKVFGASNFSKLISHLPDHDRCDAVRTISY 70

Query:    77 EAQARIRDPVYGCVAHIF 94
             EA +R+ DP+YGCV+ IF
Sbjct:    71 EAHSRLHDPIYGCVSQIF 88

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 56/99 (56%), Positives = 69/99 (69%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC +DC+FAPYF S +G + F A+HKVFGASN SKLL+ +P + R +AVVT+ Y
Sbjct:    15 CKFLRRKCVADCVFAPYFDSVEGTSHFTAVHKVFGASNASKLLMMIPASRRLDAVVTLTY 74

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLA 115
             EA AR+RDPVYGCV HIF               V+ QL+
Sbjct:    75 EALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLS 113

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2152820 LBD33 "LOB domain-containing protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 71/163 (43%), Positives = 90/163 (55%)

Query:    17 CKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAY 76
             CKFLRRKC  DC+F+PYF  EQ  + FAA+HKVFGASNVSK LLH+P   R  A +TI+Y
Sbjct:    11 CKFLRRKCNRDCVFSPYFSYEQASSHFAAVHKVFGASNVSKHLLHLPQHQRNIAAITISY 70

Query:    77 EAQARIRDPVYGCVAHIFXXXXXXXXXXXXXXXVKAQLAHNMMDTRSIENHHQWQGNCTI 136
             EA +R+RDPVYGCVAHIF               + +Q     M   S  N    Q    +
Sbjct:    71 EALSRMRDPVYGCVAHIFALHQQVVTLQEEIEFLGSQ-----MKNFSYSN----QNGSQL 121

Query:   137 TGVPSFPSSYPGNYANPISPQSSLESADCHN-NDGM--NMQEI 176
               +P F +       N +  +S L +AD  N  DG   N +E+
Sbjct:   122 NNIPEFVNQMTMATTNFVD-ESVLNNADGRNCYDGFFTNSEEM 163

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SLB7	LBD16_ARATH	No assigned EC number	0.5783	0.9813	0.8612	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00051284 hypothetical protein (213 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	215
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	2e-50

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  158 bits (402), Expect = 2e-50
 Identities = 64/102 (62%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 13  PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVV 72
           PC ACK LRRKC  DC+ APYF +EQ PARFA +HK+FGASNV+KLL  +P   R +A+ 
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQ-PARFANVHKLFGASNVTKLLKALPPEQRDDAMR 59

Query: 73  TIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQL 114
           ++ YEA AR RDPVYGCV  I++LQQQ+  LQA+L  VKAQL
Sbjct: 60  SLLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	215
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	82.64

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=3.1e-50  Score=313.22  Aligned_cols=101  Identities=58%  Similarity=1.035  Sum_probs=99.3

Q ss_pred             CChhhhHhhhCCCCCCccCCCCCCCCchhHHHHHHHHhchhhHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHH
Q 040761           13 PCGACKFLRRKCASDCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAH   92 (215)
Q Consensus        13 ~CAACK~lRRrC~~dCifAPYFPadq~~~rF~~vHKVFG~SNV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~   92 (215)
                      +|||||||||||+++|+||||||+++ +++|++||||||++||+|||+++|+++|.+||+||+|||++|.+||||||+|+
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~   79 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI   79 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence            79999999999999999999999997 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 040761           93 IFALQQQVACLQAQLMQVKAQL  114 (215)
Q Consensus        93 I~~Lq~Qi~~lqaEL~~~k~qL  114 (215)
                      |+.|+|||+++++||+.++++|
T Consensus        80 i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   80 ISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHccC
Confidence            9999999999999999999876

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.64  E-value=3.8  Score=37.08  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=58.9

Q ss_pred             hHHHHHhcCCcccHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 040761           54 NVSKLLLHVPVADRCEAVVTIAYEAQARIRDPVYGCVAHIFALQQQVACLQAQLMQVKAQLAHNMM  119 (215)
Q Consensus        54 NV~KmL~~lp~~~R~dA~~SLvYEA~aR~rDPVyGCvG~I~~Lq~Qi~~lqaEL~~~k~qLA~~~~  119 (215)
                      |+..-|+......|+..++.||-||-++.-|--|=-+-.|..+++-|..++.||++++++|+....
T Consensus        11 ~lf~rlk~a~~~~rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416          11 NLFHRLKKAEANERDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             HHHHHHhhcccCCCChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344456777788999999999999999999999999999999999999999999999999998776

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00