Citrus Sinensis ID: 040762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-----
Protein Sequence
MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Secondary Structure (PSIPRED)
cccccccccccccccccEEEEEEEEEEEEccHHHHHcccccccHHHHHHcccEEEEEEEEcccccccccEEEEEEEEEEEcccccccEEEEEEcccHHHHHHHHHcccccccEEEEEEEEEEccccccccccccEEccccccccccccccccEEEEEEcccccccEEEEEEccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEEEEEEEEEEcHHHHHHHccHHccEEEHccccccEEEEEEEcccccccccEEEEEEHHEccccccccEEEEEEEccHHHHHcccEEccccHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEEccccccccEEEEEccccccccccEEEccEEEEEcccc
Coil and Loop (DISEMBL)
meiegpkctsgygkppwifkgRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFflasyedspagvFDELVVIAGIvwnpptscAWAARVLVNSdqacdhgrkhvglpsqVARFSKRItavqgqpkgkfnGFLSMMglgatlcspknsmdvqvsemegpsatdiCNIQIATHGELIFKFWYLLPLCVIEISHF
Flexible Loop (DISEMBL)
meiegpkctsgygkppwIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Low Complexity Region (SEG)
MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Disordered region (IsUnstruct)
**********GYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLC*****************ATDICNIQIATHGELIFKFWYLLPLCVIEI***
Disordered Region (DISOPRED)
****************WIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK*************NGFL*****************VQVSEMEGPSATDICNIQIATHG*LI***WYLLPLCVIEIS*F
Disordered Region (DISEMBL)
********TSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Disordered Region (DISPRO)
**********GYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLPLCVIEISHF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
296088173	323	unnamed protein product [Vitis vinifera]	0.969	0.585	0.724	5e-75
30690193	282	uncharacterized protein [Arabidopsis tha	0.887	0.613	0.751	1e-72
224072486	292	predicted protein [Populus trichocarpa]	0.928	0.619	0.721	2e-72
145324052	212	uncharacterized protein [Arabidopsis tha	0.887	0.816	0.751	5e-72
224057822	306	predicted protein [Populus trichocarpa]	0.856	0.545	0.76	1e-70
145324050	290	uncharacterized protein [Arabidopsis tha	0.887	0.596	0.718	2e-70
359473776	835	PREDICTED: pentatricopeptide repeat-cont	0.774	0.180	0.794	1e-65
356549602	304	PREDICTED: uncharacterized protein LOC10	0.882	0.565	0.674	1e-63
388503542	304	unknown [Lotus japonicus]	0.887	0.569	0.653	5e-63
255543188	837	pentatricopeptide repeat-containing prot	0.8	0.186	0.743	8e-63

>gi|296088173|emb|CBI35665.3| unnamed protein product [Vitis vinifera]

 Score =  285 bits (730), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 137/189 (72%), Positives = 158/189 (83%)

Query: 7   KCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPA 66
           K +SGYGKPPWIFKGRALYQLHLVKA+TARAFIPKEF+LVEAFGYTLGGFFLASYEDSPA
Sbjct: 26  KSSSGYGKPPWIFKGRALYQLHLVKAETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPA 85

Query: 67  GVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQ 126
           GVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSKRITA+  Q
Sbjct: 86  GVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACVHGRKAVGLPSQVARFSKRITAIPRQ 145

Query: 127 PKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHGELIFKFWYLLP 186
            + K NGFL+M+G+G T  SPK+ MDVQV+E+EG +A D C++ + T   L+    ++ P
Sbjct: 146 QRSKTNGFLNMIGIGNTFNSPKDCMDVQVTEIEGHTAADACSVNLNTAVPLLKPEKWMGP 205

Query: 187 LCVIEISHF 195
              + +  F
Sbjct: 206 AIKMSLPSF 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30690193|ref|NP_849717.1| uncharacterized protein [Arabidopsis thaliana] gi|42562369|ref|NP_174131.3| uncharacterized protein [Arabidopsis thaliana] gi|145362298|ref|NP_973925.2| uncharacterized protein [Arabidopsis thaliana] gi|26452923|dbj|BAC43539.1| unknown protein [Arabidopsis thaliana] gi|28973285|gb|AAO63967.1| unknown protein [Arabidopsis thaliana] gi|222424621|dbj|BAH20265.1| AT1G28100 [Arabidopsis thaliana] gi|332192792|gb|AEE30913.1| uncharacterized protein [Arabidopsis thaliana] gi|332192793|gb|AEE30914.1| uncharacterized protein [Arabidopsis thaliana] gi|332192794|gb|AEE30915.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 148/173 (85%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
           M++E  + +SGY KPPWIFKG ALYQ+HLVKA TARAFIPKEF+LVEAFGYTLGGFFLAS
Sbjct: 1   MDVEEKRVSSGYAKPPWIFKGSALYQIHLVKAATARAFIPKEFRLVEAFGYTLGGFFLAS 60

Query: 61  YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRI 120
           Y+DSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSK I
Sbjct: 61  YDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKNI 120

Query: 121 TAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
           TAV  Q + +  GFL   GLG TL  P+N M+V+VSE++  ++TDICNIQI +
Sbjct: 121 TAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSEVDSAASTDICNIQIRS 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072486|ref|XP_002303755.1| predicted protein [Populus trichocarpa] gi|222841187|gb|EEE78734.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 148/187 (79%), Gaps = 6/187 (3%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGR-----ALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGG 55
           ME+   KC+SGYGKPPWIFKGR     ALYQLHLVK++TARAFIPKEF+LVEAFGYTLGG
Sbjct: 1   MEVAETKCSSGYGKPPWIFKGRHVSSNALYQLHLVKSETARAFIPKEFRLVEAFGYTLGG 60

Query: 56  FFLASYEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVAR 115
           FFLASYEDSPAGVFDELVVIAG VWNPPTSCAWAARVLVNS  ACDHGRK VGLPSQVA+
Sbjct: 61  FFLASYEDSPAGVFDELVVIAGTVWNPPTSCAWAARVLVNSGDACDHGRKEVGLPSQVAK 120

Query: 116 FSKRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIATHG 175
           FSK+ITA+  Q K KF GFL  +GLG    S K+ MDV V+E    S TDICNI +   G
Sbjct: 121 FSKKITAIPRQRKSKFTGFLDKIGLGTASSSTKSCMDVLVTETNDRSTTDICNINLTAVG 180

Query: 176 ELIFKFW 182
            + F  W
Sbjct: 181 -MKFDKW 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145324052|ref|NP_001077615.1| uncharacterized protein [Arabidopsis thaliana] gi|332192796|gb|AEE30917.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  275 bits (704), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 130/173 (75%), Positives = 148/173 (85%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
           M++E  + +SGY KPPWIFKG ALYQ+HLVKA TARAFIPKEF+LVEAFGYTLGGFFLAS
Sbjct: 1   MDVEEKRVSSGYAKPPWIFKGSALYQIHLVKAATARAFIPKEFRLVEAFGYTLGGFFLAS 60

Query: 61  YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRI 120
           Y+DSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSK I
Sbjct: 61  YDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKNI 120

Query: 121 TAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
           TAV  Q + +  GFL   GLG TL  P+N M+V+VSE++  ++TDICNIQI +
Sbjct: 121 TAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSEVDSAASTDICNIQIRS 173

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057822|ref|XP_002299341.1| predicted protein [Populus trichocarpa] gi|222846599|gb|EEE84146.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 133/175 (76%), Positives = 146/175 (83%), Gaps = 8/175 (4%)

Query: 7   KCTSGYGKPPWIFKGR-----ALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY 61
           KC+ GYGKPPWIFKGR     ALYQLHLVK++ ARA IPKEF+LVEAFGYTLGGFFLASY
Sbjct: 7   KCSLGYGKPPWIFKGRQGYYKALYQLHLVKSKIARASIPKEFRLVEAFGYTLGGFFLASY 66

Query: 62  EDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK--- 118
           EDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNS  ACDHGRK VGLPSQVA+FSK   
Sbjct: 67  EDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSGDACDHGRKDVGLPSQVAKFSKVIF 126

Query: 119 RITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
           +ITA+  + K KFNGFL M+GLG    S K+ MDV V+E  GPSATDICNI++ T
Sbjct: 127 KITAIPRRRKSKFNGFLDMIGLGTASSSTKDCMDVLVTETNGPSATDICNIKLTT 181

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145324050|ref|NP_001077614.1| uncharacterized protein [Arabidopsis thaliana] gi|332192795|gb|AEE30916.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  270 bits (691), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 148/181 (81%), Gaps = 8/181 (4%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
           M++E  + +SGY KPPWIFKG ALYQ+HLVKA TARAFIPKEF+LVEAFGYTLGGFFLAS
Sbjct: 1   MDVEEKRVSSGYAKPPWIFKGSALYQIHLVKAATARAFIPKEFRLVEAFGYTLGGFFLAS 60

Query: 61  YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFS--- 117
           Y+DSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFS   
Sbjct: 61  YDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKVS 120

Query: 118 -----KRITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIA 172
                K ITAV  Q + +  GFL   GLG TL  P+N M+V+VSE++  ++TDICNIQI 
Sbjct: 121 DTLFLKNITAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSEVDSAASTDICNIQIR 180

Query: 173 T 173
           +
Sbjct: 181 S 181

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473776|ref|XP_002267026.2| PREDICTED: pentatricopeptide repeat-containing protein At5g13270, chloroplastic-like [Vitis vinifera]

 Score =  254 bits (649), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 120/151 (79%), Positives = 135/151 (89%)

Query: 23  ALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNP 82
           ALYQLHLVKA+TARAFIPKEF+LVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNP
Sbjct: 554 ALYQLHLVKAETARAFIPKEFRLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAGIVWNP 613

Query: 83  PTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSMMGLGA 142
           PTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSKRITA+  Q + K NGFL+M+G+G 
Sbjct: 614 PTSCAWAARVLVNSDEACVHGRKAVGLPSQVARFSKRITAIPRQQRSKTNGFLNMIGIGN 673

Query: 143 TLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
           T  SPK+ MDVQV+E+EG +A D C++ + T
Sbjct: 674 TFNSPKDCMDVQVTEIEGHTAADACSVNLNT 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549602|ref|XP_003543181.1| PREDICTED: uncharacterized protein LOC100306249 isoform 1 [Glycine max]

 Score =  248 bits (632), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/172 (67%), Positives = 140/172 (81%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
           ME    K +SGYGKPPW+F+G A YQLHLVKA+ ARA+IPKEFKLVEAFGYTLGGFFLAS
Sbjct: 1   MEAVEAKASSGYGKPPWVFRGSAWYQLHLVKAEKARAYIPKEFKLVEAFGYTLGGFFLAS 60

Query: 61  YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRI 120
           YEDSP GVFDELVVIAG+VWN PTSCAWA RV VN+D+AC HGRK VGLPSQ+ARFSK I
Sbjct: 61  YEDSPVGVFDELVVIAGLVWNRPTSCAWATRVYVNNDEACYHGRKEVGLPSQMARFSKTI 120

Query: 121 TAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIA 172
           TA+  Q +   +GFL+ +G+GA   +PK+ ++VQV++++   A D CNI I+
Sbjct: 121 TAISRQQREIKSGFLNRIGIGAKYSTPKDPLNVQVTKIKCLDAEDTCNINIS 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503542|gb|AFK39837.1| unknown [Lotus japonicus]

 Score =  246 bits (627), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 113/173 (65%), Positives = 136/173 (78%)

Query: 1   MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
           M++   K +SGYGK PW+F+G A YQLHLVKA+ ARA+IPKEFKLV+AFGYTLGGFFLAS
Sbjct: 1   MDVAEAKSSSGYGKAPWVFRGSAWYQLHLVKAEKARAYIPKEFKLVQAFGYTLGGFFLAS 60

Query: 61  YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRI 120
           YEDSP GVFDELVVIAG+VWN PTSCAWA RV VN+ +AC HGRK VGLPSQ+ARFSK I
Sbjct: 61  YEDSPVGVFDELVVIAGLVWNRPTSCAWATRVYVNNGEACYHGRKEVGLPSQMARFSKTI 120

Query: 121 TAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
           TA+  QPK   NGF +M+G GA  C+PK  ++VQ +++    A D  NI + +
Sbjct: 121 TAISRQPKDNMNGFFNMIGTGAKFCNPKEHLNVQETKIRCVDAADTYNISLKS 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543188|ref|XP_002512657.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548618|gb|EEF50109.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  245 bits (625), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 116/156 (74%), Positives = 127/156 (81%)

Query: 18  IFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAGVFDELVVIAG 77
           IF   ALYQLHLVKA+TARAFIPKEF+LVEAFGYTLGGFFLA+YEDSPAG FDELVVIAG
Sbjct: 554 IFTNIALYQLHLVKAETARAFIPKEFRLVEAFGYTLGGFFLANYEDSPAGAFDELVVIAG 613

Query: 78  IVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSKRITAVQGQPKGKFNGFLSM 137
           IVWNPPTSCAWAARVLV+SD ACDHGRK VGLPS VARFSKR   +  Q   K+N FL  
Sbjct: 614 IVWNPPTSCAWAARVLVSSDDACDHGRKEVGLPSHVARFSKRNATIARQRTSKYNHFLDP 673

Query: 138 MGLGATLCSPKNSMDVQVSEMEGPSATDICNIQIAT 173
            GLG  L  P + MDVQV+E+ G S T+ICNI +AT
Sbjct: 674 FGLGTALSRPDDRMDVQVTEINGASTTNICNINLAT 709

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	195
TAIR|locus:2010539	290	AT1G28100 "AT1G28100" [Arabido	0.876	0.589	0.726	1.2e-65

TAIR|locus:2010539 AT1G28100 "AT1G28100" [Arabidopsis thaliana (taxid:3702)]

 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 130/179 (72%), Positives = 147/179 (82%)

Query:     1 MEIEGPKCTSGYGKPPWIFKGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS 60
             M++E  + +SGY KPPWIFKG ALYQ+HLVKA TARAFIPKEF+LVEAFGYTLGGFFLAS
Sbjct:     1 MDVEEKRVSSGYAKPPWIFKGSALYQIHLVKAATARAFIPKEFRLVEAFGYTLGGFFLAS 60

Query:    61 YEDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK-- 118
             Y+DSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSD+AC HGRK VGLPSQVARFSK  
Sbjct:    61 YDDSPAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDEACHHGRKEVGLPSQVARFSKVS 120

Query:   119 ------RITAVQGQPKGKFNGFLSMMGLGATLCSPKNSMDVQVSEMEGPSATDICNIQI 171
                    ITAV  Q + +  GFL   GLG TL  P+N M+V+VSE++  ++TDICNIQI
Sbjct:   121 DTLFLKNITAVPKQKRDRAFGFLDTFGLGTTLSHPENLMEVKVSEVDSAASTDICNIQI 179


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.139   0.442    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      195       195   0.00078  111 3  11 22  0.43    32
                                                     31  0.44    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  599 (64 KB)
  Total size of DFA:  177 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.69u 0.10s 16.79t   Elapsed:  00:00:01
  Total cpu time:  16.69u 0.10s 16.79t   Elapsed:  00:00:01
  Start:  Sat May 11 10:55:51 2013   End:  Sat May 11 10:55:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031334 hypothetical protein (292 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	195
COG4689	247	Adc Acetoacetate decarboxylase [Secondary metaboli	99.91
PRK02265	246	acetoacetate decarboxylase; Provisional	99.88
PF06314	236	ADC: Acetoacetate decarboxylase (ADC); InterPro: I	99.81
PF09844	217	DUF2071: Uncharacterized conserved protein (COG207	97.13
COG3361	240	Uncharacterized conserved protein [Function unknow	90.42

>COG4689 Adc Acetoacetate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=1.8e-24  Score=183.68  Aligned_cols=105  Identities=19%  Similarity=0.305  Sum_probs=97.5

Q ss_pred             CCCCCCCCCcEEEEeEEEE-EEeeChhhHhhcCCCCceehhhcCcceEEEEEEEc-CCCCCcccce-eeEEeEEEeCCCc
Q 040762            8 CTSGYGKPPWIFKGRALYQ-LHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY-EDSPAGVFDE-LVVIAGIVWNPPT   84 (195)
Q Consensus         8 ~~p~YppaPW~l~G~a~~~-l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY-~dSpVGpYdE-Llvipg~V~~~~~   84 (195)
                      -+|+||++||+|.+|+|+. .||++++++|+++|++||+.+    +|+.+.|+|+ +++++|.|.| .++||  |.+.|+
T Consensus        16 tsPa~P~GPYrF~nREy~iItYRTd~~~Lr~~VPePLei~E----PlVkfEfirM~DstGfGdYTEsGQvIP--Vsf~G~   89 (247)
T COG4689          16 TSPAYPPGPYRFRNREYFIITYRTDPDALRAVVPEPLEIDE----PLVKFEFIRMPDSTGFGDYTESGQVIP--VSFNGR   89 (247)
T ss_pred             CCCCCCCCCceeccceEEEEEEecCHHHHHhhCCCccccCC----cceeEEEEeccCCCCccccccCCcEEE--EEeccc
Confidence            4699999999999999988 679999999999999999765    6799999999 8889999999 57888  677799


Q ss_pred             cceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           85 SCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        85 ~~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      ++.|.+.||+|++.+++||||+|||||+||...+
T Consensus        90 ~G~Y~h~MyLdd~ppiAgGRElwgfPKKLa~P~l  123 (247)
T COG4689          90 KGSYTHCMYLDDHPPIAGGRELWGFPKKLATPKL  123 (247)
T ss_pred             cCceEEEEEecCCCccccchhhccCchhhCCcee
Confidence            9999999999999999999999999999999988

>PRK02265 acetoacetate decarboxylase; Provisional

Probab=99.88  E-value=3.7e-22  Score=173.59  Aligned_cols=107  Identities=16%  Similarity=0.229  Sum_probs=95.5

Q ss_pred             CCCCCCCCCcEEEEeEEEE-EEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcC-CCCCcccceeeEEeEEEeCCCcc
Q 040762            8 CTSGYGKPPWIFKGRALYQ-LHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYE-DSPAGVFDELVVIAGIVWNPPTS   85 (195)
Q Consensus         8 ~~p~YppaPW~l~G~a~~~-l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~-dSpVGpYdELlvipg~V~~~~~~   85 (195)
                      .+|.||++||+|.+++++. .|++|++++++++|++|++..    +++.+.|++|. .+..|+|+|..+. ..|+++++.
T Consensus        16 ~~p~~p~~p~~~~~~e~l~i~y~Td~~~l~~~lP~pl~~~~----p~v~~~~~~~~~~~~~g~Y~E~~i~-i~v~y~G~~   90 (246)
T PRK02265         16 TSPAYPPGPYRFVNREYLIITYRTDPDALRAVVPEPLEVDE----PLVKYEFIRMPDSTGFGDYTESGQV-IPVRYEGEP   90 (246)
T ss_pred             CCCCCCCCCceEecccEEEEEEEECHHHHHhhCCCCcccCC----CEEEEEEEECCCCCCccCccEEEEE-EEEEECCEE
Confidence            3489999999999888885 779999999999999998642    78999999996 6678999998653 568999999


Q ss_pred             ceeEEEEEcCChhhHHhhhhccCCCCcceeeeEE
Q 040762           86 CAWAARVLVNSDQACDHGRKHVGLPSQVARFSKR  119 (195)
Q Consensus        86 ~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~~  119 (195)
                      +.+.+.||||++.++++|||+||+||++|+++++
T Consensus        91 g~y~~~m~vd~~~ai~~GRE~~G~PKk~a~~~l~  124 (246)
T PRK02265         91 GGYTHAMYLDDHPPIAGGRELWGFPKKLASPKLE  124 (246)
T ss_pred             eeEEEEEEecCchHHhhhhhhcCCchhcCCceEE
Confidence            9999999999999999999999999999999884

>PF06314 ADC: Acetoacetate decarboxylase (ADC); InterPro: IPR010451 Acetoacetate decarboxylase (ADC) is involved in solventogenesis in certain bacteria, which occurs at the end of the exponential growth phase when there is a metabolic switch from classical sugar fermentation with the production of acetate and butyrate to the re-internalisation and oxidation of these acids to acetate and butanol []

Probab=99.81  E-value=7.9e-20  Score=154.60  Aligned_cols=95  Identities=22%  Similarity=0.295  Sum_probs=81.5

Q ss_pred             EEeEEEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCCCCCc--ccceeeEEeEEEeCCCccceeEEEEEcCCh
Q 040762           20 KGRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSPAG--VFDELVVIAGIVWNPPTSCAWAARVLVNSD   97 (195)
Q Consensus        20 ~G~a~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~dSpVG--pYdELlvipg~V~~~~~~~~~It~IyVDse   97 (195)
                      ..+.+...|++|++++++++|++|++..   ++++.+++++|.++++|  +|+|+.+. ..|++.++.+.|+..||||++
T Consensus        18 ~~~~~~v~~~td~~~l~~lLP~~l~~~~---~~~v~~~~~~~~~~~~~~~~Y~e~~v~-v~v~~~g~~g~y~~~l~vd~~   93 (236)
T PF06314_consen   18 DATALSVVYRTDPEALAALLPPPLEPAD---PPLVTVYFAEYRDTSWGGGPYNEAGVA-VPVRYGGKPGSYVPVLWVDSD   93 (236)
T ss_dssp             EEEEEEEEEE--HHHHHCCSBTTEEESS----SEEEEEEEEEEEETGTTEEEEEEEEE-EEEEETTEEEEEEEEEEESSH
T ss_pred             CceEEEEEEEECHHHHHhhCCcccccCC---CCEEEEEEEEEeCCCCCCCCccEEEEE-EEEEECCeEEEEEEEEECCCH
Confidence            7777777999999999999999999877   78999999999999999  99998765 458889999999999999999


Q ss_pred             hhHHhhhhccCCCCcceeeeE
Q 040762           98 QACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        98 ~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      .++.+|||+||+||++|++++
T Consensus        94 ~~i~~GRE~~G~PK~~a~i~~  114 (236)
T PF06314_consen   94 DAIIAGREIWGFPKKLADIDF  114 (236)
T ss_dssp             HHHHHHHHTT---EEE-EEEE
T ss_pred             HHHHhhHHhhCCCccccceEE
Confidence            999999999999999999999

In Clostridium, SpoOA controls the switch from acid to solvent production. A SpoAO-binding motif occurs in the gene encoding ADC []. This family also contains the fungal decarboxylase DEC1 encoded by the Tox1B locus, which along with the Tox1A gene product is required for the production of the polyketide T-toxin. The pathogenic fungus Cochliobolus heterostrophus (Drechslera maydis) requires the T-toxin for high virulence to maize with T-cytoplasm [].; GO: 0016831 carboxy-lyase activity; PDB: 3BH2_D 3BH3_C 3BGT_C 3C8W_D 3CMB_A.

>PF09844 DUF2071: Uncharacterized conserved protein (COG2071); InterPro: IPR018644 This conserved protein, similar to YgjF, has no known function

Probab=97.13  E-value=0.0046  Score=52.88  Aligned_cols=97  Identities=18%  Similarity=0.166  Sum_probs=73.5

Q ss_pred             EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEc---CCC-----CC-cccceeeEEeEEEeCCC-ccceeEEEEE
Q 040762           24 LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY---EDS-----PA-GVFDELVVIAGIVWNPP-TSCAWAARVL   93 (195)
Q Consensus        24 ~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY---~dS-----pV-GpYdELlvipg~V~~~~-~~~~~It~Iy   93 (195)
                      ++.-|.||++.+++++|++|++...-|++.+++.-.++   ..-     |. ..+.|+-+ ---|++++ +.+.|+-++-
T Consensus         9 lf~hw~Vdp~~l~~~lP~gl~lD~~dG~a~vsvV~F~~~~~r~~g~P~~p~~~~F~eiNv-RtYV~~~~~~~GV~F~sld   87 (217)
T PF09844_consen    9 LFLHWPVDPEVLRPLLPAGLELDTFDGKAWVSVVPFRMKDVRPRGLPPIPLGSTFPEINV-RTYVRDDGGKRGVYFFSLD   87 (217)
T ss_pred             EEEeccCCHHHHHhhCCCCCCCeEECCEEEEEEEEEEEeccccccCCCccccCCCCceEE-EEEEEeCCCCCEEEEEEEe
Confidence            34456899999999999998865544887665543333   211     22 25777754 34577777 8999999999


Q ss_pred             cCChhhHHhhhhccCCCCcceeeeEEee
Q 040762           94 VNSDQACDHGRKHVGLPSQVARFSKRIT  121 (195)
Q Consensus        94 VDse~Sv~~GRe~WGiPK~LA~F~~~i~  121 (195)
                      +|+.-++..+|..+|+|=+.|+++.+.+
T Consensus        88 ~~~~l~~~~ar~~~~lpY~~a~m~~~~~  115 (217)
T PF09844_consen   88 ADSRLSVFVARRLFGLPYYHADMRVERD  115 (217)
T ss_pred             cCchHhhHhhHhhcCCcEEEeeeEEEEc
Confidence            9999999999999999999999988443

>COG3361 Uncharacterized conserved protein [Function unknown]

Probab=90.42  E-value=2.4  Score=37.20  Aligned_cols=116  Identities=18%  Similarity=0.092  Sum_probs=83.7

Q ss_pred             CCCCCCCCCCCCCCCcEEEEeE---EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEc--------CCC-CCccc
Q 040762            2 EIEGPKCTSGYGKPPWIFKGRA---LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY--------EDS-PAGVF   69 (195)
Q Consensus         2 ~~~~~~~~p~YppaPW~l~G~a---~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY--------~dS-pVGpY   69 (195)
                      ..+--..+++-++.||.|+-+-   .++-+-|+++.++..+|+.+++...-|-+-+++.=.++        ..+ -++.|
T Consensus         2 ~~~~~~~~~~~~~~~~i~~qrW~DvlfahWPVdpe~va~~~P~g~~~Dt~dG~ayvs~vPF~m~n~r~~~~lpip~~rtF   81 (240)
T COG3361           2 ALAGYPVTPPALPRPVIFDQRWTDVLFAHWPVDPESVAGSYPPGTRPDTADGMAYVSLVPFRMSNTRLGTALPIPYVRTF   81 (240)
T ss_pred             cccccCCCCCCCCcceeeeceeceeeEEeccCCHHHHhccCCCCCCccccCCeeEEEEeeeeeecccccccCCCcccccc
Confidence            3445567788999999998773   33334689999999999998876544555333322222        122 34688


Q ss_pred             ceeeEEeEEEeCCCccceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           70 DELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        70 dELlvipg~V~~~~~~~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      -|+-+ --.|.+.|+.+.+.-.+--+..-.+-.-|...|+|-..|+...
T Consensus        82 pElNl-RtYVt~~GrpGIyFfsLda~~~l~V~~aR~~fglPY~~adMr~  129 (240)
T COG3361          82 PELNL-RTYVTNAGRPGIYFFSLDAARLLVVPLARIGFGLPYAWADMRM  129 (240)
T ss_pred             cccce-EEEEeeCCCceeEEEeccchhhheeeeeheecCCchhhhhhhh
Confidence            89755 2447888999888888777777888899999999999998887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	195
3bh2_A	244	ADC, AAD, acetoacetate decarboxylase; lyase, plasm	1e-04
3bgt_A	246	ADC, AAD, probable acetoacetate decarboxylase; lya	3e-04

>3bh2_A ADC, AAD, acetoacetate decarboxylase; lyase, plasmid, schiff base; 2.40A {Clostridium acetobutylicum atcc 824} Length = 244

 Score = 40.8 bits (95), Expect = 1e-04
 Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 5/113 (4%)

Query: 6   PKCTSGYGKPPWIFKGRA-LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDS 64
           P  +  + + P+ F  R     ++       R  +P+  ++ E     +    +A ++ S
Sbjct: 13  PLTSPAFPRGPYKFHNREYFNIVYRTDMDALRKVVPEPLEIDEP---LVRFEIMAMHDTS 69

Query: 65  PAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFS 117
             G + E      + +N      +   + ++++ A   GR+    P ++    
Sbjct: 70  GLGCYTESGQAIPVSFNGVK-GDYLHMMYLDNEPAIAVGRELSAYPKKLGYPK 121

>3bgt_A ADC, AAD, probable acetoacetate decarboxylase; lyase, schiff base; HET: MSE; 2.10A {Chromobacterium violaceum} PDB: 3bh3_A Length = 246

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 14/113 (12%), Positives = 39/113 (34%), Gaps = 5/113 (4%)

Query: 6   PKCTSGYGKPPWIFKGR-ALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDS 64
           P  +  +   P+ F  R  +   +        A +P+  ++ E     +   F+   + +
Sbjct: 14  PLTSPAFPPGPYRFVNREYMIITYRTDPAAIEAVLPEPLQMAEP---VVRYEFIRMPDST 70

Query: 65  PAGVFDELVVIAGIVWNPPTSCAWAARVLVNSDQACDHGRKHVGLPSQVARFS 117
             G + E   +  + +      ++   + ++       GR+  G P +  +  
Sbjct: 71  GFGDYSESGQVIPVTFRGER-GSYTLAMFLDDQPPLAGGRELWGFPKKAGKPR 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	195
3bh2_A	244	ADC, AAD, acetoacetate decarboxylase; lyase, plasm	99.9
3bgt_A	246	ADC, AAD, probable acetoacetate decarboxylase; lya	99.89
3c8w_A	255	Acetoacetate decarboxylase ADC; YP_094708.1, struc	99.89
3cmb_A	283	Acetoacetate decarboxylase; YP_001047042.1, struct	99.76

>3bh2_A ADC, AAD, acetoacetate decarboxylase; lyase, plasmid, schiff base; 2.40A {Clostridium acetobutylicum atcc 824}

Probab=99.90  E-value=2.5e-23  Score=176.94  Aligned_cols=106  Identities=14%  Similarity=0.199  Sum_probs=94.1

Q ss_pred             CCCCCCCCCcEEE-EeEEEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEc-CCCCCcccceeeEEeEEEeCCCcc
Q 040762            8 CTSGYGKPPWIFK-GRALYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASY-EDSPAGVFDELVVIAGIVWNPPTS   85 (195)
Q Consensus         8 ~~p~YppaPW~l~-G~a~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY-~dSpVGpYdELlvipg~V~~~~~~   85 (195)
                      .+++||++||++. ++.+.+.|++|++++++++|.+|++.+    +++.+++++| +.+.+|+|+|+.+. ..|+++++.
T Consensus        15 ~~~~~p~~p~~~~~~~~~~~~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~v~~~G~~   89 (244)
T 3bh2_A           15 TSPAFPRGPYKFHNREYFNIVYRTDMDALRKVVPEPLEIDE----PLVRFEIMAMHDTSGLGCYTESGQA-IPVSFNGVK   89 (244)
T ss_dssp             TSCSSCCSCCEEEEEEEEEEEEECCHHHHHHHSCTTCBCSS----CEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEE
T ss_pred             cCCCCCCCceEecCCcEEEEEEEcCHHHHHhhCCCCcccCc----cEEEEEEEECCCCCCccCcCEEeEE-EEEEECCeE
Confidence            3489999999999 555556889999999999999998765    7899999999 55577999998774 448889999


Q ss_pred             ceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           86 CAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        86 ~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      +.|++.||||++.|+++|||+||+||++|+|++
T Consensus        90 g~y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~  122 (244)
T 3bh2_A           90 GDYLHMMYLDNEPAIAVGRELSAYPKKLGYPKL  122 (244)
T ss_dssp             EEEEEEEEESCHHHHHHHHHTSCCCEEECEEEE
T ss_pred             EEEEEEEECCChhHHHHhHHhhCCCcccccceE
Confidence            999999999999999999999999999999999

>3bgt_A ADC, AAD, probable acetoacetate decarboxylase; lyase, schiff base; HET: MSE; 2.10A {Chromobacterium violaceum} PDB: 3bh3_A

Probab=99.89  E-value=6.5e-23  Score=174.37  Aligned_cols=106  Identities=13%  Similarity=0.222  Sum_probs=93.6

Q ss_pred             CCCCCCCCCcEEEEeE-EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCC-CCCcccceeeEEeEEEeCCCcc
Q 040762            8 CTSGYGKPPWIFKGRA-LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYED-SPAGVFDELVVIAGIVWNPPTS   85 (195)
Q Consensus         8 ~~p~YppaPW~l~G~a-~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~d-SpVGpYdELlvipg~V~~~~~~   85 (195)
                      .+|.||++||++.++. +...|++|++++++++|++|++..    +++++++++|.+ +.+|+|+|+.+. ..|+++++.
T Consensus        16 ~~p~~p~~p~~~~~~~~~~~~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~V~~~G~~   90 (246)
T 3bgt_A           16 TSPAFPPGPYRFVNREYMIITYRTDPAAIEAVLPEPLQMAE----PVVRYEFIRMPDSTGFGDYSESGQV-IPVTFRGER   90 (246)
T ss_dssp             TSCSSCCCCEEEEEEEEEEEEEECCHHHHHTTCCTTSEECS----SEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEE
T ss_pred             CCCCCCCCccEEcceeEEEEEEEcCHHHHHhhCCCCcccCC----CEEEEEEEECCCCCCcccccEEEEE-EEEEECCEE
Confidence            4489999999999555 444789999999999999999865    779999999955 488999998773 348889999


Q ss_pred             ceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           86 CAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        86 ~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      +.|++.||||++.++++|||+||+||++|+|++
T Consensus        91 g~y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~  123 (246)
T 3bgt_A           91 GSYTLAMFLDDQPPLAGGRELWGFPKKAGKPRL  123 (246)
T ss_dssp             EEEEEEEEESCHHHHHHHHHTTCCCEEECEEEE
T ss_pred             EEEEEEEECCCchHHHHHHHHhCCCcccCCceE
Confidence            999999999999999999999999999999998

>3c8w_A Acetoacetate decarboxylase ADC; YP_094708.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; HET: LCK CIT; 1.60A {Legionella pneumophila subsp} SCOP: d.347.1.1

Probab=99.89  E-value=7e-23  Score=175.21  Aligned_cols=104  Identities=17%  Similarity=0.301  Sum_probs=93.8

Q ss_pred             CCCCCCCcEEEEeEEEEE-EeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCC-CCCcccceeeEEeEEEeCCCccce
Q 040762           10 SGYGKPPWIFKGRALYQL-HLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYED-SPAGVFDELVVIAGIVWNPPTSCA   87 (195)
Q Consensus        10 p~YppaPW~l~G~a~~~l-~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~d-SpVGpYdELlvipg~V~~~~~~~~   87 (195)
                      |+||++||++.++.++++ |++|++++++++|.+|++.+    +++++++++|.+ +.+|+|+|+.+. ..|+++++.+.
T Consensus        28 p~~p~~p~~~~~~~~l~v~~~td~~~l~~llP~~L~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-i~V~~~G~~g~  102 (255)
T 3c8w_A           28 NTYPAGPYRFINREFFIIAYETDPDLLQAILPPDMELLE----PVVKFEFIRMPDSTGFGDYTESGQV-VPVRYKGEEGG  102 (255)
T ss_dssp             CSSCCSCEEEEEEEEEEEEEECCHHHHHHHSCTTEEESS----SEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTEEEE
T ss_pred             CCCCCCCEEEcCCcEEEEEEEECHHHHHhhCCCCcccCC----CEEEEEEEEcCCCCCccCccEEEEE-EEEEECCEEEE
Confidence            799999999998877775 79999999999999998876    679999999954 467999998763 34888999999


Q ss_pred             eEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           88 WAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        88 ~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      |++.||||++.|+++|||+||+||++|+|++
T Consensus       103 y~~~l~vd~~~ai~~GRe~~G~PK~~a~~~~  133 (255)
T 3c8w_A          103 FTISMFLDCHAPIAGGREIWGFPXKLAKPKL  133 (255)
T ss_dssp             EEEEEEESCHHHHHHHHHTTCCCEEECEEEE
T ss_pred             EEEEEECCChhHHHHHHHHhCCCCccCCceE
Confidence            9999999999999999999999999999998

>3cmb_A Acetoacetate decarboxylase; YP_001047042.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE P33 PE8; 1.60A {Methanoculleus marisnigri JR1} SCOP: d.347.1.1

Probab=99.76  E-value=1.2e-18  Score=152.38  Aligned_cols=103  Identities=16%  Similarity=0.157  Sum_probs=87.7

Q ss_pred             CCCCCCCcEEEEeE-EEEEEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCCCC-C--cccceeeEEeEEEeCCCc-
Q 040762           10 SGYGKPPWIFKGRA-LYQLHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSP-A--GVFDELVVIAGIVWNPPT-   84 (195)
Q Consensus        10 p~YppaPW~l~G~a-~~~l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~dSp-V--GpYdELlvipg~V~~~~~-   84 (195)
                      |.||++|.. .+.. +.+.|++|++++++++|++|++.+    +++.+++++|.++. .  |+|+|+.+. ..|+|+++ 
T Consensus        39 p~~p~~p~~-~~~~~~~i~y~Td~~al~~llP~~L~~~~----P~v~~~~~~~~d~~~~~gg~Y~E~gv~-i~V~y~g~~  112 (283)
T 3cmb_A           39 KFDPETLVT-QKATALSLSFETERDLLENYIPEGFELLA----PEVQVAFNKFTEINWLHGGQYNLINVA-APVRFHGKK  112 (283)
T ss_dssp             ECCTTCEEE-EEEEEEEEEEECCHHHHHTTSBTTEEECS----SEEEEEEEEEEEEGGGTTEEEEEEEEE-EEEEEECSS
T ss_pred             CCCCCCCcc-cceEEEEEEEEECHHHHHHhCCCCcccCC----CEEEEEEEEccCCCCCCCCCccEEEEE-EEEEECCcc
Confidence            679997666 5555 445789999999999999988765    57999999996554 6  899998764 35888888 


Q ss_pred             ---cceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           85 ---SCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        85 ---~~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                         .+.|++.||||++.++++|||+||+||++|++..
T Consensus       113 ~~~~G~y~~~m~vD~~~~i~~GREi~G~PKk~a~i~~  149 (283)
T 3cmb_A          113 DELDGAYTLVVWENKTAPILGGREQTGIPKIYADIED  149 (283)
T ss_dssp             CEEEEEEEEEEEESSHHHHHHHHHHHCCCEEECEECC
T ss_pred             ceeeEEEEeEEEcCChhHhhhhhhhcCCcchhcCcee
Confidence               8999999999999999999999999999999765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	195
d3c8wa1	250	Acetoacetate decarboxylase {Legionella pneumophila	99.85
d3cmba1	264	Acetoacetate decarboxylase {Methanoculleus marisni	99.65

>d3c8wa1 d.347.1.1 (A:5-254) Acetoacetate decarboxylase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: Acetoacetate decarboxylase-like
superfamily: Acetoacetate decarboxylase-like
family: Acetoacetate decarboxylase-like
domain: Acetoacetate decarboxylase
species: Legionella pneumophila [TaxId: 446]

Probab=99.85  E-value=1.6e-21  Score=164.98  Aligned_cols=107  Identities=16%  Similarity=0.280  Sum_probs=94.1

Q ss_pred             CCCCCCCCCCcEEEEeEEEEE-EeeChhhHhhcCCCCceehhhcCcceEEEEEEE-cCCCCCcccceeeEEeEEEeCCCc
Q 040762            7 KCTSGYGKPPWIFKGRALYQL-HLVKAQTARAFIPKEFKLVEAFGYTLGGFFLAS-YEDSPAGVFDELVVIAGIVWNPPT   84 (195)
Q Consensus         7 ~~~p~YppaPW~l~G~a~~~l-~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvr-Y~dSpVGpYdELlvipg~V~~~~~   84 (195)
                      +-+|+||++||++.|+.++.+ |++|++++++++|++|++.+    +.+++.+++ |+.+..|+|+|+.+. ..|+++++
T Consensus        20 ~~ap~~p~~P~~~~~~~~l~v~y~tdp~~l~~~lP~~l~~~~----~~v~~~~~~~~~~~~~g~Y~E~~v~-v~v~~~g~   94 (250)
T d3c8wa1          20 RWLNTYPAGPYRFINREFFIIAYETDPDLLQAILPPDMELLE----PVVKFEFIRMPDSTGFGDYTESGQV-VPVRYKGE   94 (250)
T ss_dssp             CSSCSSCCSCEEEEEEEEEEEEEECCHHHHHHHSCTTEEESS----SEEEEEEEEEEEETTTEEEEEEEEE-EEEEETTE
T ss_pred             CCCCCCCCCCeEEeCcEEEEEEEEECHHHHHhhCCCCCccCC----CcEEEEEEEecCCCCCceeeEEEEE-EEEEECCE
Confidence            345789999999999888885 79999999999999999865    346666665 578889999998764 66999999


Q ss_pred             cceeEEEEEcCChhhHHhhhhccCCCCcceeeeE
Q 040762           85 SCAWAARVLVNSDQACDHGRKHVGLPSQVARFSK  118 (195)
Q Consensus        85 ~~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F~~  118 (195)
                      .+.|+..||||++.++.+|||+||+||++|++++
T Consensus        95 ~G~y~~~~~~d~~~ai~~GRe~~G~PKk~a~i~~  128 (250)
T d3c8wa1          95 EGGFTISMFLDCHAPIAGGREIWGFPKKLAKPKL  128 (250)
T ss_dssp             EEEEEEEEEESCHHHHHHHHHTTCCCEEECEEEE
T ss_pred             EEEEEEEEECCCcHHHHhhHHHhCCCccccceEE
Confidence            9999999999999999999999999999999998

>d3cmba1 d.347.1.1 (A:1-264) Acetoacetate decarboxylase {Methanoculleus marisnigri [TaxId: 2198]}

class: Alpha and beta proteins (a+b)
fold: Acetoacetate decarboxylase-like
superfamily: Acetoacetate decarboxylase-like
family: Acetoacetate decarboxylase-like
domain: Acetoacetate decarboxylase
species: Methanoculleus marisnigri [TaxId: 2198]

Probab=99.65  E-value=1.4e-16  Score=134.92  Aligned_cols=105  Identities=14%  Similarity=0.198  Sum_probs=86.6

Q ss_pred             CCCCCCCCcEEEEeEEEE-EEeeChhhHhhcCCCCceehhhcCcceEEEEEEEcCCCC---CcccceeeEEeEEEeCCCc
Q 040762            9 TSGYGKPPWIFKGRALYQ-LHLVKAQTARAFIPKEFKLVEAFGYTLGGFFLASYEDSP---AGVFDELVVIAGIVWNPPT   84 (195)
Q Consensus         9 ~p~YppaPW~l~G~a~~~-l~~v~~~~ara~iP~~Le~~~~~G~~Lg~~~lvrY~dSp---VGpYdELlvipg~V~~~~~   84 (195)
                      .++|+|.|..+++..+++ .|++|++++++++|++|++.+    ++++++++++.+.+   .|+|+|+.+. ..|+|.++
T Consensus        18 ~~~~~p~~~~~~~~~~l~i~y~Tdp~~l~~lLP~pl~~~~----p~v~~~~~~~~~~~~~~gg~Y~e~~v~-v~v~y~g~   92 (264)
T d3cmba1          18 GGKFDPETLVTQKATALSLSFETERDLLENYIPEGFELLA----PEVQVAFNKFTEINWLHGGQYNLINVA-APVRFHGK   92 (264)
T ss_dssp             CEECCTTCEEEEEEEEEEEEEECCHHHHHTTSBTTEEECS----SEEEEEEEEEEEEGGGTTEEEEEEEEE-EEEEEECS
T ss_pred             CCCCCCCCccCccceEEEEEEEeCHHHHHHhCCCCCccCC----CceEEEEEEeCCCCccCCCCccEEEEE-EEEEEcCc
Confidence            356888888888888876 679999999999999999754    56889999986555   3799998543 34666554


Q ss_pred             c----ceeEEEEEcCChhhHHhhhhccCCCCcceee-eE
Q 040762           85 S----CAWAARVLVNSDQACDHGRKHVGLPSQVARF-SK  118 (195)
Q Consensus        85 ~----~~~It~IyVDse~Sv~~GRe~WGiPK~LA~F-~~  118 (195)
                      .    +.|..-||+|++.++++|||+||+||++|+. ++
T Consensus        93 ~~~~~G~y~~~m~~d~~~aI~~GRE~~G~PKk~a~i~~~  131 (264)
T d3cmba1          93 KDELDGAYTLVVWENKTAPILGGREQTGIPKIYADIEDL  131 (264)
T ss_dssp             SCEEEEEEEEEEEESSHHHHHHHHHHHCCCEEECEECCC
T ss_pred             CCcceeeEEEEEEccCchHhhcchhhcCCCcccccCcce
Confidence            3    6899999999999999999999999999997 44