Citrus Sinensis ID: 040771

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGNLN
cHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccEEEccccccHHHHHHHHHHcccccccccccccEEEEEccHHHHHHHHHHHHHcccEEEEccccccccccccccccccEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHccccEEEEEEEEEcccccEEEcccccccccEEEccccccccEEEEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEEEcccccccccccccccccccHHHHHHccccccccHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHccccccccccEEEccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHccccccccccccccccccc
ccHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEccccHHHEEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHccHHHHEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHHccHHHHHHHHHHHHHcccHHHEEEEEEccccccccccHccHHHHcHHHHHHHHcccccccccHHHHHccccccHHHcccccccccccccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccccc
MEALISLLLVTMSSIFLSVSGSNLESFLQclpqhvqpsnpisdviftqNHSNFQSVLNAYIKNRKFliastpkplAILTAKHESHVQATVICAKQAGLELRirsgghdydglsyistvPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANtskvhafpagvchslgvgghisgggyGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAirggggasFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWqyvapklpeeLFIRVMILvpkeektvspndchemswgqSTVFFLdssqnvtsiDVLLqrpteakiSFKAKSDyvknvipreGLEEIWKKMIDNENmfmqwnpyggrmseisesetafphragNLFLIQYYeswpeeginatdlYTNKLRdfydsmapyvssnprntylnyrdldigissnnqtslkdaevygtkyfngnFKKLVEVKtrfdpdnffkneqsippgnln
MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQrpteakisfkaksdyvknvipregLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFdpdnffkneqsippgnln
MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLgvgghisgggygNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGNLN
***LISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMS******TAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDP****************
MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPG***
MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGNLN
*EALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEALISLLLVTMSSIFLSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGNLN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query496 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.947 0.824 0.477 1e-119
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.953 0.867 0.435 1e-112
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.929 0.845 0.440 1e-111
A6P6W0545 Cannabidiolic acid syntha N/A no 0.931 0.847 0.429 1e-110
A6P6V9544 Cannabidiolic acid syntha N/A no 0.933 0.851 0.433 1e-110
A6P6W1545 Cannabidiolic acid syntha N/A no 0.931 0.847 0.431 1e-109
P93479535 Reticuline oxidase OS=Pap N/A no 0.893 0.828 0.399 1e-84
P30986538 Reticuline oxidase OS=Esc N/A no 0.953 0.879 0.384 1e-83
O06997447 Uncharacterized FAD-linke yes no 0.764 0.847 0.282 6e-24
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.334 0.362 0.313 8e-14
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  428 bits (1100), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 241/505 (47%), Positives = 333/505 (65%), Gaps = 35/505 (6%)

Query: 20  SGSNLESFLQCLPQHVQ-PSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAIL 78
           S S   SFL+C     + P + I+D +F+Q +  F SVL AYI+N +F  +ST KP  I+
Sbjct: 32  SNSVYNSFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIII 91

Query: 79  TAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANE 138
           T + ESHV A V C+K     L+IRSGGHDYDGLSYIS  PF ILDM N+R + +DIA+ 
Sbjct: 92  TPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASN 151

Query: 139 TAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVI 198
           +AW+ AGATLGE+Y++I   S+VH FPAGVC ++GVGGH+SGGGYGN++RK+G+SVD V 
Sbjct: 152 SAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVE 211

Query: 199 DAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA 258
           DA++VDV GR+L+R++MGEDLFWAI GGGG S+GV+L +K+KLV VP  VT+F+V++ + 
Sbjct: 212 DAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMD 271

Query: 259 QGATDVLYKWQYVAPKLPEELFIRVMI--LVPKEEKTVSPN------------------- 297
            GA D+++KWQ V PK    LF+R++I  +  K+ KTV  +                   
Sbjct: 272 SGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKE 331

Query: 298 ---------DCHEMSWGQSTVFFLDSSQNVTSID--VLLQRPTEAKISFKAKSDYVKNVI 346
                    +C EM+W QS +++ D+  N T +D  V L R  +     K KSDYV   I
Sbjct: 332 FPELGLKKENCSEMTWFQSALWW-DNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAI 390

Query: 347 PREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPEEGI 406
           P++G+E ++KKMI+   + + +NPYGG+M+E++ +   FPHR   LF IQY  +W E   
Sbjct: 391 PKKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSA 449

Query: 407 NATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKYFNG 466
                Y N+ +  Y  M  +VS NPR++Y NYRD+DIG++ +   S K+ EVYG KYF  
Sbjct: 450 EIEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGE 509

Query: 467 NFKKLVEVKTRFDPDNFFKNEQSIP 491
           NF +LV++KT  DP NFF+NEQSIP
Sbjct: 510 NFDRLVKIKTAVDPGNFFRNEQSIP 534

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
255578041524 Reticuline oxidase precursor, putative [ 0.957 0.906 0.612 1e-171
224056755526 predicted protein [Populus trichocarpa] 0.941 0.887 0.608 1e-170
224115592514 predicted protein [Populus trichocarpa] 0.951 0.918 0.607 1e-169
224061579501 predicted protein [Populus trichocarpa] 0.931 0.922 0.611 1e-167
224056761519 predicted protein [Populus trichocarpa] 0.975 0.932 0.580 1e-166
224056759519 predicted protein [Populus trichocarpa] 0.975 0.932 0.580 1e-166
224117860530 predicted protein [Populus trichocarpa] 0.951 0.890 0.587 1e-162
255564315526 Reticuline oxidase precursor, putative [ 0.977 0.922 0.575 1e-161
255564317533 Reticuline oxidase precursor, putative [ 0.931 0.866 0.588 1e-159
224115642534 predicted protein [Populus trichocarpa] 0.971 0.902 0.562 1e-159
>gi|255578041|ref|XP_002529891.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223530618|gb|EEF32494.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  608 bits (1569), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 312/509 (61%), Positives = 382/509 (75%), Gaps = 34/509 (6%)

Query: 17  LSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLA 76
           L+ S   L++FLQCLP HV+PS PI + I+T N+S+FQSVL AYIKNR+FL  ST KPLA
Sbjct: 11  LATSNQVLDNFLQCLPNHVEPSKPILEAIYTPNNSSFQSVLQAYIKNRRFLTPSTTKPLA 70

Query: 77  ILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIA 136
           I+TA HESHVQATV+CAK  G++LRIRSGGHD++GLSY+S VPFVILDMFNLRSIDIDIA
Sbjct: 71  IVTALHESHVQATVVCAKYHGMQLRIRSGGHDFEGLSYMSDVPFVILDMFNLRSIDIDIA 130

Query: 137 NETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDN 196
           +ETAWVQAGA LGELY+KIA  SKVHAFPAG+C +LG GGH SGGGYG ++RKYG+SVD+
Sbjct: 131 SETAWVQAGAILGELYYKIAKKSKVHAFPAGICLTLGAGGHFSGGGYGTMMRKYGLSVDH 190

Query: 197 VIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKT 256
           +IDAQ+VDV G IL+R+SMGEDLFWAIRGGGGASFGVIL+WKIKLV VP KVT+F V +T
Sbjct: 191 IIDAQIVDVNGNILDRKSMGEDLFWAIRGGGGASFGVILSWKIKLVRVPAKVTIFSVQRT 250

Query: 257 LAQGATDVLYKWQYVAPKLPEELFIRVMILV--PK---EEKTV----------------- 294
           L QGAT ++YKWQ VA K+ +ELFIR    V  P+   E+KTV                 
Sbjct: 251 LEQGATGIVYKWQQVAKKIDKELFIRAQPEVQNPRNATEKKTVRVTFIGQFLGQTSKLLT 310

Query: 295 -----------SPNDCHEMSWGQSTVFFLDSSQNVTSIDVLLQRPTEAKISFKAKSDYVK 343
                         DC ++SW QST+F+ +     +  +VLL R   A++ FK+KSDYVK
Sbjct: 311 LMNKKFPELGLKQEDCKQVSWLQSTMFWTNLPIE-SPPEVLLNRTIPAELFFKSKSDYVK 369

Query: 344 NVIPREGLEEIWKKMIDNENMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWPE 403
           +VI ++ LE+IWK  +  E M MQWN YGGRMSEI ++ T FPHRAG LF IQY+  W +
Sbjct: 370 DVISKKDLEKIWKMFLKTEGMVMQWNLYGGRMSEIPDTSTPFPHRAGYLFKIQYFTLWFQ 429

Query: 404 EGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIGISSNNQTSLKDAEVYGTKY 463
           EG  A++ + +  R+ YDSMAPYVS +PR  +LNYRDLDIG + +N T+ ++AEVYG KY
Sbjct: 430 EGTEASNRHISLAREMYDSMAPYVSKDPREAFLNYRDLDIGSNPSNLTNFEEAEVYGHKY 489

Query: 464 FNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
           F  NF++L EVK R DPDNFFKNEQSIPP
Sbjct: 490 FRNNFRRLTEVKKRVDPDNFFKNEQSIPP 518

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224056755|ref|XP_002299007.1| predicted protein [Populus trichocarpa] gi|224056757|ref|XP_002299008.1| predicted protein [Populus trichocarpa] gi|222846265|gb|EEE83812.1| predicted protein [Populus trichocarpa] gi|222846266|gb|EEE83813.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115592|ref|XP_002317074.1| predicted protein [Populus trichocarpa] gi|222860139|gb|EEE97686.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224061579|ref|XP_002300550.1| predicted protein [Populus trichocarpa] gi|222847808|gb|EEE85355.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056761|ref|XP_002299010.1| predicted protein [Populus trichocarpa] gi|222846268|gb|EEE83815.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056759|ref|XP_002299009.1| predicted protein [Populus trichocarpa] gi|222846267|gb|EEE83814.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117860|ref|XP_002317686.1| predicted protein [Populus trichocarpa] gi|222860751|gb|EEE98298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564315|ref|XP_002523154.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537561|gb|EEF39185.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255564317|ref|XP_002523155.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537562|gb|EEF39186.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224115642|ref|XP_002317086.1| predicted protein [Populus trichocarpa] gi|222860151|gb|EEE97698.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query496
TAIR|locus:2121509528 AT4G20800 [Arabidopsis thalian 0.592 0.556 0.553 3.4e-141
TAIR|locus:2197935530 AT1G26390 [Arabidopsis thalian 0.572 0.535 0.574 3.1e-140
TAIR|locus:2197950535 AT1G26380 [Arabidopsis thalian 0.570 0.528 0.561 9.5e-135
TAIR|locus:2197900552 AT1G26410 [Arabidopsis thalian 0.590 0.530 0.556 9.5e-135
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.564 0.531 0.536 5.4e-130
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.538 0.506 0.534 7e-128
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.576 0.538 0.508 1e-126
TAIR|locus:2121544539 AT4G20840 [Arabidopsis thalian 0.554 0.510 0.535 5.6e-126
TAIR|locus:2025452541 AT1G01980 [Arabidopsis thalian 0.574 0.526 0.5 5e-125
TAIR|locus:2121539570 AT4G20830 [Arabidopsis thalian 0.580 0.505 0.498 2.5e-121
TAIR|locus:2121509 AT4G20800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 830 (297.2 bits), Expect = 3.4e-141, Sum P(2) = 3.4e-141
 Identities = 165/298 (55%), Positives = 212/298 (71%)

Query:     2 EALISLLLVTMSSIF-LSVSGSNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAY 60
             E +  LLLV + S+   + +  N+E+FL+CL     P NPI++ I+T  +S F S   +Y
Sbjct:     3 EVVYVLLLVLLVSVSDANETKPNIENFLRCLRNRTNPKNPIAEAIYTHENSTFASSYVSY 62

Query:    61 IKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPF 120
               N++ L  +  K +AI+ AKHESHVQATV+CAK  G+++RIRSGGHDY+GLS+ S+VPF
Sbjct:    63 TNNKRCLNPNDTKLIAIVAAKHESHVQATVVCAKSNGIQIRIRSGGHDYEGLSFTSSVPF 122

Query:   121 VILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXX 180
             VILDM +LRSI ID+  + AWV AGAT+GELY KIA  SK  AF  GVC +L        
Sbjct:   123 VILDMHDLRSITIDVFRKQAWVDAGATMGELYTKIAAASKTLAFAGGVCPTLGAGGHISG 182

Query:   181 XXXXNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIK 240
                 NL+RKYGISVD+V+DA++VDV G IL   ++G DL WAIRGGGGASFGVIL+WKI 
Sbjct:   183 GGYGNLIRKYGISVDHVVDARIVDVNGNILTGATLGRDLLWAIRGGGGASFGVILSWKIN 242

Query:   241 LVAVPEKVTLFKVDKTLAQGATDVLYKWQYVAPKLPEELFIRVMILVPKEEKTVSPND 298
             LV VP+ VT+FKV+KTL QG TDVLYKWQ V+ KLP++LF+R M   PK    V P++
Sbjct:   243 LVDVPKTVTVFKVNKTLEQGVTDVLYKWQLVSSKLPQDLFLRAM---PKPVNGVVPSE 297
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2197935 AT1G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197950 AT1G26380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197900 AT1G26410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121544 AT4G20840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025452 AT1G01980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121539 AT4G20830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.1034.1
hypothetical protein (514 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 6e-26
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 4e-22
pfam0803145 pfam08031, BBE, Berberine and berberine like 9e-17
TIGR00387413 TIGR00387, glcD, glycolate oxidase, subunit GlcD 4e-05
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score =  102 bits (256), Expect = 6e-26
 Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 74  PLAILTAKHESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNL-RSID 132
           P A++  + E  V A V  A + GL + +R GG    G + ++    V+LD+  L   ++
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 133 IDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGI 192
           ID  + TA V+AG TLG+L   +A    +     G      VGG I+  G G    +YG+
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 193 SVDNVIDAQLVDVKGRILN 211
           + DNV+  ++V   G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 496
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.92
PRK11183564 D-lactate dehydrogenase; Provisional 99.91
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.88
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.87
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.87
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.86
KOG1232511 consensus Proteins containing the FAD binding doma 99.86
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.83
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.81
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.75
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.71
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.7
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.69
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.58
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.52
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.5
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.25
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.56
PRK09799258 putative oxidoreductase; Provisional 94.87
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 94.31
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 93.85
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 93.85
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 91.44
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 91.24
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 89.32
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 88.21
PLN02906 1319 xanthine dehydrogenase 84.41
PLN00192 1344 aldehyde oxidase 83.26
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 82.42
TIGR02969 1330 mam_aldehyde_ox aldehyde oxidase. Members of this 81.91
PLN00107257 FAD-dependent oxidoreductase; Provisional 81.4
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-37  Score=325.86  Aligned_cols=216  Identities=22%  Similarity=0.249  Sum_probs=180.1

Q ss_pred             CCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCHHHHHHHHHHHH--HcCCcEEEEcCCCCCCCCCcccCCC
Q 040771           42 SDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAK--QAGLELRIRSGGHDYDGLSYISTVP  119 (496)
Q Consensus        42 ~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~--~~~~~~~~~ggGh~~~g~~~~~~~~  119 (496)
                      .+.+.+ ++..++.+.      ..|+......|.+|++|+|++||+++|++|+  +++++|++||+|||+.|.+...  +
T Consensus        40 ~~~v~~-d~~~~~~~s------~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~--~  110 (525)
T PLN02441         40 DGHLSF-DPVSTASAS------KDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAP--G  110 (525)
T ss_pred             CceEEe-CHHHHHHHh------cCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCC--C
Confidence            455553 244565543      2577777789999999999999999999997  6699999999999999887654  4


Q ss_pred             eEEEEcCCCCC-------eEEcCCCCEEEEeCCccHHHHHHHHHhcCCcccc-ccCCCCccccccccccCCCCCCccccc
Q 040771          120 FVILDMFNLRS-------IDIDIANETAWVQAGATLGELYFKIANTSKVHAF-PAGVCHSLGVGGHISGGGYGNLLRKYG  191 (496)
Q Consensus       120 g~vIdl~~l~~-------i~id~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~-~~G~~~~vgvgG~~~ggg~g~~s~~~G  191 (496)
                      |++|||++||+       +++|.+..+|+|++|++|.++.+++.++|  ++. ..+.+..++|||.+++||+|..+.+||
T Consensus       111 GivIdms~Ln~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG  188 (525)
T PLN02441        111 GVVVDMRSLRGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHG  188 (525)
T ss_pred             eEEEECCCCCCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccC
Confidence            89999999999       36888889999999999999999999998  432 246667889999999999999999999


Q ss_pred             cccceeeEEEEEeeCCeEEe-ccCCCccchhhhccccCCCeEEEEEEEEEEEeeCceeEEEEEeccchhhHHHHHHHHH
Q 040771          192 ISVDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLAQGATDVLYKWQ  269 (496)
Q Consensus       192 ~~~D~v~~~~vV~~~G~~v~-~~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (496)
                      ..+|+|+++|||+++|++++ +..+|+|||||+||| +|+|||||++|+|++|.|+...++.+.+....++.+.++.+.
T Consensus       189 ~~~d~Vl~leVVtadGevv~~s~~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li  266 (525)
T PLN02441        189 PQISNVLELDVVTGKGEVVTCSPTQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLI  266 (525)
T ss_pred             cHHHhEEEEEEEeCCceEEEeCCCCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHH
Confidence            99999999999999999998 667789999999999 799999999999999999876665565554444444444443

>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>PLN00192 aldehyde oxidase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02969 mam_aldehyde_ox aldehyde oxidase Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-113
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-113
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-106
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 4e-85
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 5e-85
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 6e-85
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 6e-85
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 8e-84
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 9e-84
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 1e-83
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 1e-21
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 3e-19
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 5e-18
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 3e-14
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 2e-12
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 3e-10
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 2e-09
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 7e-06
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 7e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  406 bits (1044), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/514 (41%), Positives = 309/514 (60%), Gaps = 52/514 (10%)
Query: 25  ESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHES 84
           E+FL+C  +H+  +     +++TQ+   + S+LN+ I+N +F+  +TPKPL I+T  + S
Sbjct: 5   ENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNS 64
Query: 85  HVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQA 144
           H+QAT++C+K+ GL++R RSGGHD +G+SYIS VPFV++D+ N+ SI ID+ ++TAWV+A
Sbjct: 65  HIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEA 124
Query: 145 GATLGELYFKIANTSKVHAFPAGVCHSLXXXXXXXXXXXXNLLRKYGISVDNVIDAQLVD 204
           GATLGE+Y+ I   ++  +FP G C ++             L+R YG++ DN+IDA LV+
Sbjct: 125 GATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVN 184
Query: 205 VKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QGATD 263
           V G++L+R+SMGEDLFWAIRGGGG +FG+I AWKIKLVAVP K T+F V K +   G   
Sbjct: 185 VDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVK 244
Query: 264 VLYKWQYVAPKLPEELFIRVMILVPK---------------------------------- 289
           +  KWQ +A K  ++L +    +                                     
Sbjct: 245 LFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKS 304
Query: 290 -EEKTVSPNDCHEMSWGQSTVFFLDSSQNVTS---IDVLLQRPTEAKISFKAKSDYVKNV 345
             E  +   DC E SW  +T+F+       T+    ++LL R    K +F  K DYVK  
Sbjct: 305 FPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKP 364
Query: 346 IPREGLEEIWKKMIDNE---NMFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYESWP 402
           IP   + +I +K+ + +    M++ + PYGG M EISES   FPHRAG ++ + Y  SW 
Sbjct: 365 IPETAMVKILEKLYEEDVGAGMYVLY-PYGGIMEEISESAIPFPHRAGIMYELWYTASWE 423
Query: 403 EEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIG----ISSNNQTSLKDAEV 458
           ++  N  + + N +R  Y+   PYVS NPR  YLNYRDLD+G     S NN T    A +
Sbjct: 424 KQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQ---ARI 478
Query: 459 YGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
           +G KYF  NF +LV+VKT+ DP+NFF+NEQSIPP
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query496
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-165
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-161
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-156
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-155
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-152
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-148
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-107
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 1e-43
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 8e-38
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 4e-19
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-14
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 1e-11
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 4e-11
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 1e-07
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 3e-06
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 2e-05
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  547 bits (1410), Expect = 0.0
 Identities = 220/513 (42%), Positives = 318/513 (61%), Gaps = 44/513 (8%)

Query: 22  SNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAK 81
           +  E+FL+C  +H+  +     +++TQ+   + S+LN+ I+N +F+  +TPKPL I+T  
Sbjct: 2   NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPS 61

Query: 82  HESHVQATVICAKQAGLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAW 141
           + SH+QAT++C+K+ GL++R RSGGHD +G+SYIS VPFV++D+ N+ SI ID+ ++TAW
Sbjct: 62  NNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAW 121

Query: 142 VQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQ 201
           V+AGATLGE+Y+ I   ++  +FP G C ++GVGGH SGGGYG L+R YG++ DN+IDA 
Sbjct: 122 VEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAH 181

Query: 202 LVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTL-AQG 260
           LV+V G++L+R+SMGEDLFWAIRGGGG +FG+I AWKIKLVAVP K T+F V K +   G
Sbjct: 182 LVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG 241

Query: 261 ATDVLYKWQYVAPKLPEELFIRVMILV-------PKEEKTVS------------------ 295
              +  KWQ +A K  ++L +    +         K + TV                   
Sbjct: 242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLM 301

Query: 296 ----------PNDCHEMSWGQSTVFF---LDSSQNVTSIDVLLQRPTEAKISFKAKSDYV 342
                       DC E SW  +T+F+   ++ +      ++LL R    K +F  K DYV
Sbjct: 302 NKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYV 361

Query: 343 KNVIPREGLEEIWKKMIDNEN--MFMQWNPYGGRMSEISESETAFPHRAGNLFLIQYYES 400
           K  IP   + +I +K+ + +         PYGG M EISES   FPHRAG ++ + Y  S
Sbjct: 362 KKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTAS 421

Query: 401 WPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIG-ISSNNQTSLKDAEVY 459
           W ++     + + N +R  Y+   PYVS NPR  YLNYRDLD+G  +  +  +   A ++
Sbjct: 422 WEKQE--DNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIW 479

Query: 460 GTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPP 492
           G KYF  NF +LV+VKT+ DP+NFF+NEQSIPP
Sbjct: 480 GEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Length = 219 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.98
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.98
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.97
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.96
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.96
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.92
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.91
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.91
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.88
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.79
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 98.23
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.59
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 97.26
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 96.38
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 96.24
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 93.42
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 89.16
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 89.1
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=4.1e-85  Score=694.86  Aligned_cols=470  Identities=47%  Similarity=0.880  Sum_probs=394.8

Q ss_pred             CCcccHhhhcccCCCCCCCCCCeEEcCCCCChHHHHHhhhcccccccCCCCCccEEEEcCCHHHHHHHHHHHHHcCCcEE
Q 040771           22 SNLESFLQCLPQHVQPSNPISDVIFTQNHSNFQSVLNAYIKNRKFLIASTPKPLAILTAKHESHVQATVICAKQAGLELR  101 (496)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~~~  101 (496)
                      .+.++|.+||+.....+.++++.|++|+|+.|++++++|++|.||+.....+|.+||+|+|++||+++|++|+++++||+
T Consensus         2 ~~~~~f~~c~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~   81 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNVANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIR   81 (518)
T ss_dssp             CHHHHHHHHHHHHCCC----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEE
T ss_pred             ChhHHHHHHHHhcCCccCCCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEE
Confidence            45678999999877777889999999999999999988999999999889999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCcccCCCeEEEEcCCCCCeEEcCCCCEEEEeCCccHHHHHHHHHhcCCccccccCCCCccccccccccC
Q 040771          102 IRSGGHDYDGLSYISTVPFVILDMFNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGG  181 (496)
Q Consensus       102 ~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i~id~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~gg  181 (496)
                      +|||||++.+.+.....++++|||++||+|++|+++++++||||+++.+|+++|.++|+++.+++|.|++|||||+++||
T Consensus        82 vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gG  161 (518)
T 3vte_A           82 TRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGG  161 (518)
T ss_dssp             EESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTC
T ss_pred             EECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCC
Confidence            99999999987643334699999999999999999999999999999999999999876788899999999999999999


Q ss_pred             CCCCCccccccccceeeEEEEEeeCCeEEeccCCCccchhhhccccCCCeEEEEEEEEEEEeeCceeEEEEEeccch-hh
Q 040771          182 GYGNLLRKYGISVDNVIDAQLVDVKGRILNRESMGEDLFWAIRGGGGASFGVILAWKIKLVAVPEKVTLFKVDKTLA-QG  260 (496)
Q Consensus       182 g~g~~s~~~G~~~D~v~~~~vV~~~G~~v~~~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~~~~~~~~~~~~~~~-~~  260 (496)
                      |+|+++++||+++|+|+++|||++||++++.+.+++|||||+||||+|+|||||+++||++|.|+.+..|.+.+... ++
T Consensus       162 g~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~  241 (518)
T 3vte_A          162 GYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHG  241 (518)
T ss_dssp             CCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHH
T ss_pred             CCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHH
Confidence            99999999999999999999999999999854567999999999867899999999999999998777777776543 66


Q ss_pred             HHHHHHHHHHHCCCCCccceEEEEEEcc-------CC-Ce-ee--------------------------ecCcceecchh
Q 040771          261 ATDVLYKWQYVAPKLPEELFIRVMILVP-------KE-EK-TV--------------------------SPNDCHEMSWG  305 (496)
Q Consensus       261 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~-------~g-~~-~v--------------------------~~~~~~~~~~~  305 (496)
                      +.+++.+|+++.+.+|+++++.+.+...       .+ +. .+                          ...++.+++|+
T Consensus       242 ~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~  321 (518)
T 3vte_A          242 LVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWI  321 (518)
T ss_dssp             HHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHH
T ss_pred             HHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchh
Confidence            7899999999999999999988776531       01 11 11                          11235567888


Q ss_pred             HHHHhhhcCCCCC-cc---hhhhccCCCcccccceeecccccCCCCHhHHHHHHHHHhcC--CCceEEEeecCCccccCC
Q 040771          306 QSTVFFLDSSQNV-TS---IDVLLQRPTEAKISFKAKSDYVKNVIPREGLEEIWKKMIDN--ENMFMQWNPYGGRMSEIS  379 (496)
Q Consensus       306 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~gg~v~~~~  379 (496)
                      +.+.+++.. +.+ .+   ++.+++++.....+||.||.|+.++++++.++.+++.+.+.  +.+.+.++++||+|++++
T Consensus       322 ~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          322 DTTIFYSGV-VNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHTSSS-CCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhcC-CccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            887776544 221 23   34455554444456788999999889999999999988763  357899999999999999


Q ss_pred             CCCCCccccCCceEEEEEEeecCCCCccchHHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCC-CCCCCCCcchhhhh
Q 040771          380 ESETAFPHRAGNLFLIQYYESWPEEGINATDLYTNKLRDFYDSMAPYVSSNPRNTYLNYRDLDIG-ISSNNQTSLKDAEV  458 (496)
Q Consensus       380 ~~~taf~~R~~~~~~i~~~~~W~~~~~d~~~~~~~w~~~~~~~l~~~~~~~~~~~Y~Nyad~~~~-~~~~~~~s~~~~~~  458 (496)
                      .++|||+||++.+|.+++.+.|.++.++  ++..+|++++++.|.|+..+.+.++|+||.|.+++ .+....++++....
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~~~~--~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQEDN--EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCTTTH--HHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCcchh--HHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            9999999998558999999999876543  67889999999999998765557899999998865 21122334455567


Q ss_pred             hcccccCCcHHHHHHHHhccCCCCCCCCCCCCCCCC
Q 040771          459 YGTKYFNGNFKKLVEVKTRFDPDNFFKNEQSIPPGN  494 (496)
Q Consensus       459 ~g~~yyg~n~~RL~~vK~kYDP~nvF~~~~~I~~~~  494 (496)
                      |++.|||+||+||++||+||||+|||+++|+|+|.+
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~  514 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLP  514 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCC
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCC
Confidence            999999999999999999999999999999999864
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 496
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 4e-17
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 2e-12
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 7e-05
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 1e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 77.7 bits (190), Expect = 4e-17
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 10/178 (5%)

Query: 73  KPLAILTAKHESHVQATVICAKQA---GLELRIRSGGHDYDGLSY----ISTVPFVILDM 125
            P A+L       + A +  A         +  R  GH   G ++    +      + D 
Sbjct: 29  LPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVNMASLGDA 88

Query: 126 FNLRSIDIDIANETAWVQAGATLGELYFKIANTSKVHAFPAGVCHSLGVGGHISGGGYGN 185
                I++                ++                    L VGG +S  G   
Sbjct: 89  AAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTLSNAGISG 147

Query: 186 LLRKYGISVDNVIDAQLVDVKGRILN-RESMGEDLFWAIRGGGGASFGVILAWKIKLV 242
              ++G  + NV++  ++   G ++   + +  DLF A+ GG G  FGVI   +I + 
Sbjct: 148 QAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRARIAVE 204
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query496
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.97
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.87
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.85
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.82
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 94.54
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 93.97
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 93.83
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.19
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 93.07
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 93.02
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 86.88
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=1.6e-37  Score=291.22  Aligned_cols=176  Identities=20%  Similarity=0.269  Sum_probs=158.5

Q ss_pred             cccccCCCCCccEEEEcCCHHHHHHHHHHHHHc---CCcEEEEcCCCCCCCCCcccCCCeEEEEcCCCCCe------EEc
Q 040771           64 RKFLIASTPKPLAILTAKHESHVQATVICAKQA---GLELRIRSGGHDYDGLSYISTVPFVILDMFNLRSI------DID  134 (496)
Q Consensus        64 ~r~~~~~~~~p~~vv~P~s~~dv~~~v~~a~~~---~~~~~~~ggGh~~~g~~~~~~~~g~vIdl~~l~~i------~id  134 (496)
                      ..|.......|.+|++|+|++||+++|++|+++   ++||++||+||++.+.+...  ++++|||++||+|      ++|
T Consensus        20 ~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~--~~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          20 TDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAP--GGVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCT--TSEEEEGGGGGCSSSSCSEEEC
T ss_pred             ECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccC--CCEeeeccccceeeeceeEEEe
Confidence            346555667999999999999999999999997   68999999999999887654  4899999999986      689


Q ss_pred             CCCCEEEEeCCccHHHHHHHHHhcCCccccc-cCCCCccccccccccCCCCCCccccccccceeeEEEEEeeCCeEEe-c
Q 040771          135 IANETAWVQAGATLGELYFKIANTSKVHAFP-AGVCHSLGVGGHISGGGYGNLLRKYGISVDNVIDAQLVDVKGRILN-R  212 (496)
Q Consensus       135 ~~~~~v~v~aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~ggg~g~~s~~~G~~~D~v~~~~vV~~~G~~v~-~  212 (496)
                      ++..+++||||++|.++.++|.++|  +.++ .+....++|||++++||+|..++.||..+|+|+++|+|++||++++ +
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            9999999999999999999999998  4333 4666778999999999999999999999999999999999999998 5


Q ss_pred             cCCCccchhhhccccCCCeEEEEEEEEEEEee
Q 040771          213 ESMGEDLFWAIRGGGGASFGVILAWKIKLVAV  244 (496)
Q Consensus       213 ~~~~~dLf~a~rG~g~g~~GIVt~~t~~l~p~  244 (496)
                      ..+|+||||++||+ +|+|||||++|||++|+
T Consensus       176 ~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            66789999999999 79999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure