Citrus Sinensis ID: 040781

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MDKQAAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHccHHHHHHHHcccccccccccEEEEEEEccccccccccEEEEEEcccccEEEccccccccccEEEEEEcccEEEEEcccccEEEEEcccccEEEcccccccccccEEEEEccEEEEEEccccccccccEEEEEEcccccEEEcccccccccccccccccEEEEEccEEEEEEccccEEEEEEccccccccccccccccccccEEEEEEEEEccEEEEEEEEcccccccEEEEEEEEccccccccEEEcccccHHHHHHHccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHccccccHHHHHHHHHHccHHcHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccEEEEEccccccEEEccccccccccEEEEEccccEEEEEcccccEEEEccccccHcccccccccccccEEEEEccEEEEEEccccccccccEEEEEccccccccccccccHHHccccHcHHHHEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEEEEcccccccEEEEEEEEccccccEEEEEEEEcccccccccHHHHccccHHHHHHHHccccccEEEEEEc
Coil and Loop (DISEMBL)
mdkqaaapegdsgsntnnsivHGDILEAILSQVPLIDLAsacyvsrswnrAVFSSLRRVNKIKPWLLLHTQsqrtmapylttahaydARSHVWIEiknnqpssfdFLLRSShstllytlspsklsfsfdplhlawhhvdaprvwrtdpvvaLVGDKVvvaggacdfeddplaveMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKysgitvsfdpstkgwsgpfhlrqfdheKKVFYSVITFANDRLIAVGLtgeaedvkSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Flexible Loop (DISEMBL)
mdkqaaapegdsgsntnNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAggacdfeddpLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTgeaedvkslkiWQVNIKGGSLEELKEIGEMPKALleklkgnkrsaveveall
Low Complexity Region (SEG)
MDKQAAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPvvalvgdkvvvaggaCDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Disordered region (IsUnstruct)
*******************IVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLE******************************
Disordered Region (DISOPRED)
********************VHGDILEAILSQVPLIDLASACYVSRSWNR**************WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Disordered Region (DISEMBL)
**************NTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Disordered Region (DISPRO)
******************SIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKQAAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEVEALL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9LDE3	394	F-box/kelch-repeat protei	yes	no	0.911	0.730	0.483	1e-72
Q3EB08	383	F-box/kelch-repeat protei	no	no	0.854	0.704	0.273	5e-13
Q08CL3	601	Kelch repeat and BTB doma	yes	no	0.487	0.256	0.245	1e-05

>sp|Q9LDE3|FBK9_ARATH F-box/kelch-repeat protein At1g23390 OS=Arabidopsis thaliana GN=At1g23390 PE=2 SV=1

 Score =  273 bits (697), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 145/300 (48%), Positives = 196/300 (65%), Gaps = 12/300 (4%)

Query: 10  GDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLH 69
           GD G     S + GDILE+ILS +PL+DL SAC VS+SWNRAVF SLRR+ K  PWL ++
Sbjct: 11  GDFGEE--ESSIDGDILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL-KTMPWLFVY 67

Query: 70  TQSQRTMAPYL--TTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHSTLLYTLSPSKLSF 126
             +QR   PY   T A AYD +S  WIE+   + P     + RSSHSTLLY LSP++ SF
Sbjct: 68  --NQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSF 125

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT--RTWE 184
           S D  HL W HV  PRVWR DP+VA+VG  +++AGG CDFE+D  AVE++ +++    WE
Sbjct: 126 STDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVELFDIESGDGAWE 185

Query: 185 ICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEK 244
            C+SMP  L +SA+STWLSVAV+S ++YVTEK SG+T SF+P T+ W+    L     E 
Sbjct: 186 RCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDL--CPGEC 243

Query: 245 KVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKG 304
            ++   I F+ +RLI  G+ G+  +   +++W+V     S  + + IG MP+  LEKL+G
Sbjct: 244 SLYSRSIGFSVNRLIMAGIIGDEYNPTGIELWEVIDSDESHLKFESIGSMPETYLEKLRG 303

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EB08|FBK69_ARATH F-box/kelch-repeat protein At3g24760 OS=Arabidopsis thaliana GN=At3g24760 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 85/311 (27%), Positives = 140/311 (45%), Gaps = 41/311 (13%)

Query: 8   PEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKP--- 64
           PE +S +  N +I   D+ E+IL  +P+  L     VS+ W R++ +SL       P   
Sbjct: 6   PEIESSTFNNLNI---DVTESILYHLPIPSLVRFTLVSKQW-RSLITSLPPSPSPSPSSP 61

Query: 65  -WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSK 123
            WL L        + +   + A+D  S+ W+ +  +  SS D L+ S+    L+T +P  
Sbjct: 62  PWLFLF--GIHNTSSFHNQSFAFDPLSNTWLRLPPSSSSS-DHLVGSNR--FLFTTAPR- 115

Query: 124 LSFSFDP-LHLAWHHVDAPRVWRTDPVVALV-----GDKVVVAGGA------CDFEDDPL 171
             FSF P L   W      R  R +P++ +        K+++ GG+       D E+  L
Sbjct: 116 --FSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEER-L 172

Query: 172 AVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGW 231
           AV++Y     +WE+C  +PA  +       L+ A+  R+ YV + YS    SF   +  W
Sbjct: 173 AVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTW 232

Query: 232 SGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEI 291
           S    L+       + ++ +   N  L+  G+ G      S  +W  +I+ GS+ E  EI
Sbjct: 233 SDVQTLK----PPGLSFAYLNSCNGMLVLGGMCG-----FSFNLW--SIEEGSM-EFSEI 280

Query: 292 GEMPKALLEKL 302
             MP+ LL  L
Sbjct: 281 AVMPEDLLFGL 291

Arabidopsis thaliana (taxid: 3702)

>sp|Q08CL3|KBTB8_DANRE Kelch repeat and BTB domain-containing protein 8 OS=Danio rerio GN=kbtbd8 PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 13/167 (7%)

Query: 80  LTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVD 139
           L +   YDAR + W  + +  P + +F     +   +Y L   +  F FDP    W H+ 
Sbjct: 408 LKSVECYDARDNCWTAV-SPMPVAMEFHSTIEYKDRIYVLQ-GEYFFCFDPRKDYWGHLP 465

Query: 140 APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS 199
           +  + RT  + AL  + +    G C        VE+Y ++  TW   + +P    D A S
Sbjct: 466 SMNIPRTQGLAALHKNCIYYIAGICRNHQRTFTVEVYDIEQNTWCRKRDLPF---DQATS 522

Query: 200 TWLSVAVNSRQLYVTEKYSGITVS---FDPSTKGWSGPFHLRQFDHE 243
            ++ V +   +L++  + + + V    F  S K       L Q+D E
Sbjct: 523 PYIKVLLLQGRLHLFVRATQVMVEEHVFRTSRKN-----SLYQYDDE 564

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
147832627	541	hypothetical protein VITISV_017946 [Viti	0.895	0.523	0.582	2e-97
359473206	391	PREDICTED: F-box/kelch-repeat protein At	0.895	0.723	0.582	3e-97
259496080	386	F-box/kelch protein [Vitis vinifera]	0.886	0.725	0.576	1e-96
400189946	394	F-box/kelch protein [Camellia sinensis]	0.844	0.677	0.601	2e-89
356497751	371	PREDICTED: F-box/kelch-repeat protein At	0.927	0.789	0.556	7e-87
224110930	408	f-box family protein [Populus trichocarp	0.870	0.674	0.579	4e-85
255568856	381	conserved hypothetical protein [Ricinus	0.949	0.787	0.565	5e-85
356502245	366	PREDICTED: F-box/kelch-repeat protein At	0.908	0.784	0.553	3e-84
357485819	416	F-box/kelch-repeat protein [Medicago tru	0.876	0.665	0.536	8e-83
357487457	373	F-box/kelch-repeat protein [Medicago tru	0.889	0.753	0.527	2e-81

>gi|147832627|emb|CAN70447.1| hypothetical protein VITISV_017946 [Vitis vinifera]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 170/292 (58%), Positives = 222/292 (76%), Gaps = 9/292 (3%)

Query: 21  VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL 80
           ++GD+LE ILS VPL+DLA AC VS  W  AV SSL   N++KPWL++HTQ+ R+  PY+
Sbjct: 30  IYGDVLELILSHVPLVDLAHACLVSNPWKHAVSSSLSHFNRLKPWLVVHTQTTRS--PYV 87

Query: 81  TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA 140
           TT HAYD RS +W+ +K   P  +   LRSSHSTLLY LSPSKLSFS+DPLHLAWHH   
Sbjct: 88  TTTHAYDPRSQLWLHLKQ-PPIRYVSALRSSHSTLLYMLSPSKLSFSYDPLHLAWHHAQP 146

Query: 141 PRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200
           P VWRTDP+V++VG ++++AGG+CDFEDDPLAVE+Y +++R+W+ CQSMPA LKDSAAST
Sbjct: 147 PLVWRTDPIVSVVGSRIIIAGGSCDFEDDPLAVEIYDIESRSWDSCQSMPATLKDSAAST 206

Query: 201 WLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIA 260
           WLS+AVN RQ++VTEK SG T SFDP+TK W GP+ LR    +  VF+S I FA DR+I 
Sbjct: 207 WLSIAVNDRQMFVTEKTSGATYSFDPATKTWHGPYDLRP---DPSVFFSAIGFAGDRMIL 263

Query: 261 VGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEV 312
           VGL G+A++VK++K+W++N +    E    +GEMP+ LLEKL+    + V +
Sbjct: 264 VGLIGDADNVKNVKVWKINEETMKCE---VVGEMPQLLLEKLRNGNSTLVSI 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473206|ref|XP_002263883.2| PREDICTED: F-box/kelch-repeat protein At1g23390 [Vitis vinifera]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 170/292 (58%), Positives = 222/292 (76%), Gaps = 9/292 (3%)

Query: 21  VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL 80
           ++GD+LE ILS VPL+DLA AC VS  W  AV SSL   N++KPWL++HTQ+ R+  PY+
Sbjct: 30  IYGDVLELILSHVPLVDLAHACLVSNPWKHAVSSSLSHFNRLKPWLVVHTQTTRS--PYV 87

Query: 81  TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA 140
           TT HAYD RS +W+ +K   P  +   LRSSHSTLLY LSPSKLSFS+DPLHLAWHH   
Sbjct: 88  TTTHAYDPRSQLWLHLKQ-PPIRYVSALRSSHSTLLYMLSPSKLSFSYDPLHLAWHHAQP 146

Query: 141 PRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200
           P VWRTDP+V++VG ++++AGG+CDFEDDPLAVE+Y +++R+W+ CQSMPA LKDSAAST
Sbjct: 147 PLVWRTDPIVSVVGSRIIIAGGSCDFEDDPLAVEIYDIESRSWDSCQSMPATLKDSAAST 206

Query: 201 WLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIA 260
           WLS+AVN RQ++VTEK SG T SFDP+TK W GP+ LR    +  VF+S I FA DR+I 
Sbjct: 207 WLSIAVNDRQMFVTEKTSGATYSFDPATKTWHGPYDLRP---DPSVFFSAIGFAGDRMIL 263

Query: 261 VGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKRSAVEV 312
           VGL G+A++VK++K+W++N +    E    +GEMP+ LLEKL+    + V +
Sbjct: 264 VGLIGDADNVKNVKVWKINEETMKCE---VVGEMPQLLLEKLRNGNSTLVSI 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|259496080|gb|ACW82829.1| F-box/kelch protein [Vitis vinifera]

 Score =  359 bits (921), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 170/295 (57%), Positives = 223/295 (75%), Gaps = 15/295 (5%)

Query: 21  VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL 80
           ++GD+LE ILS VPL+DLA AC VS  W  AV SSL   N++KPWL++HTQ+ R+  PY+
Sbjct: 25  IYGDVLELILSHVPLVDLAHACLVSNPWEHAVSSSLSHFNRLKPWLVVHTQTTRS--PYV 82

Query: 81  TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA 140
            T HAYD RS +W+ +K   P  +   LRSSHSTLLY LSPSKLSFS+DPLHLAWHH   
Sbjct: 83  ITTHAYDPRSQLWLHLKQ-PPIRYVSALRSSHSTLLYMLSPSKLSFSYDPLHLAWHHAQP 141

Query: 141 PRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST 200
           P VWRTDP+V++VG ++++AGG+CDFEDDPLAVE+Y +++R+W+ CQSMPA LKDSAAST
Sbjct: 142 PLVWRTDPIVSVVGSRIIIAGGSCDFEDDPLAVEIYDIESRSWDSCQSMPATLKDSAAST 201

Query: 201 WLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIA 260
           WLS+AVN RQ++VTEK SG T SFDP+TK W GP+ LR    +  VF+S I FA DR+I 
Sbjct: 202 WLSIAVNDRQMFVTEKTSGATYSFDPATKTWHGPYGLRP---DPSVFFSAIGFAGDRMIL 258

Query: 261 VGLTGEAEDVKSLKIWQVN---IKGGSLEELKEIGEMPKALLEKLKGNKRSAVEV 312
           VGL G+A++VK++K+W++N   +KG      + +GEMP+ LLEKL+    + V +
Sbjct: 259 VGLIGDADNVKNVKVWKINEETMKG------EVVGEMPQLLLEKLRNGNSTLVSI 307

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|400189946|gb|AFP73462.1| F-box/kelch protein [Camellia sinensis]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 172/286 (60%), Positives = 207/286 (72%), Gaps = 19/286 (6%)

Query: 23  GDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTT 82
           GD+LE ILS VPLIDL  A +V +SW RAVFSSLR +NK KPWL+ HT          TT
Sbjct: 38  GDMLETILSYVPLIDLVPASHVCKSWKRAVFSSLRHLNKPKPWLIAHTH---------TT 88

Query: 83  AHAYDARSHVWIEIKNNQPSSFDFL----LRSSHSTLLYTLSPSKLSFSFDPLHLAWHHV 138
           +HA+D RSHVWIEIK  QP          LRSSHS LLY LSPSKLSFSFDPLHL WHH 
Sbjct: 89  SHAFDPRSHVWIEIKQQQPPIKQQQQISTLRSSHSNLLYMLSPSKLSFSFDPLHLTWHHT 148

Query: 139 DAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA 198
           DAP VWR DP+VA VG  +++AGG C FEDDPLAVE+Y V+TR WE+C  MPA+LKDS+A
Sbjct: 149 DAPLVWRVDPIVAAVGRHIIIAGGTCYFEDDPLAVEIYDVETRAWELCDPMPAILKDSSA 208

Query: 199 STWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRL 258
           STWLS+A +  +L+VTEK+SG+T +FDP TK WSG + LR    +  +FYSVI F++DRL
Sbjct: 209 STWLSIASDDLKLFVTEKHSGVTHTFDPETKTWSGQYDLRP---DPCIFYSVIAFSDDRL 265

Query: 259 IAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKG 304
           I  GL GE ++V+ +K+W VN +     E +EIGEMP   LEKLKG
Sbjct: 266 ILAGLIGEMDNVRGVKLWGVNCESF---ECEEIGEMPLEFLEKLKG 308

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497751|ref|XP_003517722.1| PREDICTED: F-box/kelch-repeat protein At1g23390-like [Glycine max]

 Score =  326 bits (836), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 167/300 (55%), Positives = 214/300 (71%), Gaps = 7/300 (2%)

Query: 14  SNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQ 73
           S+T  + +HGDILEAI S VPLI L  A +VS SW RAV SSL  V  IKPWL++ TQS 
Sbjct: 2   SSTAEAPIHGDILEAIFSHVPLIHLVPASHVSNSWKRAVSSSLAHVRPIKPWLIVLTQSL 61

Query: 74  RTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHL 133
           R    ++TT HAYD RSHVW++IKN    S    +RSSHSTL Y L+PS+ SFS D LHL
Sbjct: 62  RH--SHVTTLHAYDPRSHVWLQIKNTA-RSHASPVRSSHSTLFYALTPSEFSFSLDALHL 118

Query: 134 AWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVL 193
            WH+  +PRVWRT+PVVA VG +VVVAGGAC+FEDDPLAVEMY V+++ WE C SMPA+L
Sbjct: 119 KWHYAPSPRVWRTNPVVARVGSRVVVAGGACEFEDDPLAVEMYDVNSQAWEACPSMPALL 178

Query: 194 KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITF 253
           K S AS+WLSVAV    ++VTEK+SG+T SF+  +K W GPF LR   HE  VF+ V   
Sbjct: 179 KSSTASSWLSVAVAGEIMHVTEKHSGVTYSFETISKTWKGPFSLR--PHE-SVFHCVTGT 235

Query: 254 ANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKL-KGNKRSAVEV 312
             +RL+  GL G+  +VK +K+W+V ++GG    ++E+GEMPK ++ KL  G++  +VEV
Sbjct: 236 LGERLMVAGLIGKVGNVKGVKLWEVRVRGGLGSGMEEVGEMPKEMVRKLFSGSELGSVEV 295

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110930|ref|XP_002315685.1| f-box family protein [Populus trichocarpa] gi|222864725|gb|EEF01856.1| f-box family protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 171/295 (57%), Positives = 221/295 (74%), Gaps = 20/295 (6%)

Query: 21  VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRV--------NKIKPWLLLHTQS 72
           +HGDILE+I + VPL+DL  A YV++SW  AV +SL+ V        N+IKPWLL++TQ+
Sbjct: 17  IHGDILESIFNHVPLVDLVPASYVTKSWKLAVSTSLQGVGGRRRRCPNRIKPWLLIYTQN 76

Query: 73  QRTMAPYLTTAHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPSKLSFSFDPL 131
            R   P+ TTAHAYD RSHVWIEI  ++PS  F   LRSSHSTLLY LSPS LS S+DPL
Sbjct: 77  TR--FPHSTTAHAYDPRSHVWIEI--HEPSIKFISALRSSHSTLLYMLSPSSLSLSYDPL 132

Query: 132 HLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA 191
           HL WHH+ AP +WR DP+VA+VG +V++AGG CDFEDDPLAVEMY ++T  WE+C+SMPA
Sbjct: 133 HLTWHHIKAPLIWRIDPIVAMVGKRVIIAGGTCDFEDDPLAVEMYDLETCKWEMCESMPA 192

Query: 192 VLKDSAASTWLSVAVNS--RQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYS 249
           +L++SA+STWLS+AVNS   ++YV EK +G+  SFDPS K W GP+HLR       + + 
Sbjct: 193 ILRESASSTWLSIAVNSNKNKMYVVEKSTGVAYSFDPSIKAWQGPYHLRPPQTTSTISHC 252

Query: 250 VITFAN-DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLK 303
            I FAN DRLI VG+ G  +D+KS+K+W+V+  G SLE  +EIGEMPK L+E++K
Sbjct: 253 FIGFANHDRLIFVGIIG--DDIKSIKLWEVD--GESLEVFREIGEMPKQLVERMK 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568856|ref|XP_002525399.1| conserved hypothetical protein [Ricinus communis] gi|223535362|gb|EEF37037.1| conserved hypothetical protein [Ricinus communis]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 176/311 (56%), Positives = 220/311 (70%), Gaps = 11/311 (3%)

Query: 1   MDKQAAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVN 60
           M K + A  G+       S +HGDILE+I+++VPLIDL S   VS SWNRAV +SL R N
Sbjct: 1   MSKVSKAENGEQ--EQEQSTIHGDILESIVTRVPLIDLLSTFQVSISWNRAVLTSLHRFN 58

Query: 61  KIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLS 120
           +IKPWL+LHTQ+ R+  PY T AHAYD RS VW++++   P S+   LRSSHSTLLY LS
Sbjct: 59  RIKPWLILHTQATRS--PYSTAAHAYDPRSDVWVQVQQ-PPISYISALRSSHSTLLYMLS 115

Query: 121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT 180
           PS  SFSFDP+HL WH+VDAP VWRTDPVVA+VG +VVVAGG CDFEDDPLAVE+Y + T
Sbjct: 116 PSNFSFSFDPMHLMWHNVDAPLVWRTDPVVAVVGHRVVVAGGTCDFEDDPLAVEIYDMKT 175

Query: 181 RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF 240
           R+W+ C+SMPA  KDSA+S WLS AV   ++YV  K +G+   FDP  K WSGP+ L   
Sbjct: 176 RSWDTCESMPAFFKDSASSMWLSTAVQGNKMYVVVKSTGVAYWFDPEAKSWSGPYSLCP- 234

Query: 241 DHEKKVFYSVITFANDRLIAVGLTGEAED-VKSLKIWQVNIKGGSLEELKEIGEMPKALL 299
             +  V    I FAN RLI  GLTG+ ED V S+++W++N +  S+E  KE+GEMP  L+
Sbjct: 235 --DTNVSCCCIGFANGRLILTGLTGDNEDTVSSVRLWELNSE--SMELCKEMGEMPSLLV 290

Query: 300 EKLKGNKRSAV 310
           EKL+G   S V
Sbjct: 291 EKLRGEILSTV 301

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502245|ref|XP_003519930.1| PREDICTED: F-box/kelch-repeat protein At1g23390-like [Glycine max]

 Score =  318 bits (814), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 210/298 (70%), Gaps = 11/298 (3%)

Query: 16  TNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRT 75
           T  + +HGDILEAI S VPLI L  A +VS SW RAV SSL  V  IKPWL++ TQS R 
Sbjct: 3   TEEAPIHGDILEAIFSHVPLIHLVPASHVSNSWKRAVSSSLAHVRPIKPWLIVLTQSLR- 61

Query: 76  MAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAW 135
            A ++TT HAYD RSHVW++I NN        +RSSHSTL YTL+PS+ +FS D LHL W
Sbjct: 62  -ASHVTTLHAYDPRSHVWLQI-NNSKYCHTSPVRSSHSTLFYTLTPSEFAFSLDALHLNW 119

Query: 136 HHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKD 195
           HH  +PRVWRTDPVVA VG  VVVAGGAC+FEDDPLAVEMY + +++WE C SMPA+LK 
Sbjct: 120 HHAPSPRVWRTDPVVARVGTCVVVAGGACEFEDDPLAVEMYDLKSQSWEACPSMPALLKG 179

Query: 196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAN 255
           S AS+WLSVA+    ++VTEK+SG+T SFD  +K W GPF+LR   HE  VF+ V     
Sbjct: 180 STASSWLSVAIAGEIMHVTEKHSGVTYSFDTVSKTWKGPFNLR--PHE-SVFHCVTGTLG 236

Query: 256 DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKL-KGNKRSAVEV 312
           +RL+  G+  E  +VK +K+W+V +  G    ++E+GEMPK ++ KL  G++  +VEV
Sbjct: 237 ERLMVAGVVWEVGNVKGVKLWEVRVGSG----MEEVGEMPKEMVRKLFSGSELDSVEV 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357485819|ref|XP_003613197.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355514532|gb|AES96155.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  313 bits (801), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 156/291 (53%), Positives = 205/291 (70%), Gaps = 14/291 (4%)

Query: 21  VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYL 80
           +HGD+LE I S VPLIDL  +C+VS+SWN+ VFSSL  V +IKPWL++  Q+ R  A  +
Sbjct: 14  IHGDVLETIFSFVPLIDLVPSCHVSKSWNKTVFSSLTHVRQIKPWLIVLPQTSR--ASRV 71

Query: 81  TTAHAYDARSHVWIEIKNNQP----SSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWH 136
           T AHAYD RSH W++I  +QP    +     +RSSHSTLLYTLSPS+ +FS D L L WH
Sbjct: 72  TIAHAYDPRSHAWLQITKHQPLINKTQEIPAIRSSHSTLLYTLSPSEFTFSLDALQLEWH 131

Query: 137 HVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDS 196
              +PRVWRTDP+VA VG+ VVVAGGAC+FEDDPLAVEMY++++R W  CQSMP  LK S
Sbjct: 132 KAPSPRVWRTDPIVARVGNCVVVAGGACEFEDDPLAVEMYNMESRDWVNCQSMPMTLKTS 191

Query: 197 AASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAND 256
           +AS+WLSVAV    + VTEK SG+T +F+ +T  W GP++LR  D  K V Y+V    ++
Sbjct: 192 SASSWLSVAVVGETMLVTEKNSGVTYTFNTTTMDWEGPYYLRPDD--KSVLYTVTGTLSE 249

Query: 257 RLIAVGLTGEAEDVKSLKIWQVN--IKGGSLEELKEIGEMPKALLEKLKGN 305
           +L   GL GE  +V+ +K+W V   I  G    ++EIG MPK ++EKL+G+
Sbjct: 250 KLTVAGLVGEPGNVREVKLWAVKEEIDSG----MEEIGSMPKEMVEKLRGD 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357487457|ref|XP_003614016.1| F-box/kelch-repeat protein [Medicago truncatula] gi|355515351|gb|AES96974.1| F-box/kelch-repeat protein [Medicago truncatula]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/294 (52%), Positives = 210/294 (71%), Gaps = 13/294 (4%)

Query: 24  DILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLHTQSQRTMAPYLTTA 83
           D+LEAI S +PLI+L  AC+VS+ WN AVFSSL  + +IKPWL++ TQ+ R  A  + T 
Sbjct: 17  DVLEAIFSLMPLIELVPACHVSKVWNHAVFSSLAHLKQIKPWLIILTQTTR--ASRVVTE 74

Query: 84  HAYDARSHVWIEIKNN----QPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVD 139
           HAYD RSH W++IK+     + S F   +RSSHSTLLYTL+PS+ +FS D LHL WHH  
Sbjct: 75  HAYDPRSHAWLQIKHQPLITKASEFP-TVRSSHSTLLYTLTPSEFTFSIDALHLKWHHAP 133

Query: 140 APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS 199
           +PRVWRTDP++A VG+ VVVAGGAC+FEDDPLAVEMY++++  W  CQSMP  +K+++AS
Sbjct: 134 SPRVWRTDPIIARVGNHVVVAGGACEFEDDPLAVEMYNMESSAWVRCQSMPKKMKNTSAS 193

Query: 200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLI 259
           TW SV+V    + VTEK SG+T SF+     W GP++L     ++ VFY V   ++++L+
Sbjct: 194 TWQSVSVVGETMLVTEKDSGVTYSFNAIAMKWEGPYYLCP---DQSVFYCVTGTSSEKLM 250

Query: 260 AVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKGNKR-SAVEV 312
            VGL GEA +V+ +K+W+V  K G    +KEIG MPK ++EKLKG+    +VEV
Sbjct: 251 VVGLVGEAGNVREVKLWEV--KDGLSSGMKEIGSMPKEMVEKLKGDSEFGSVEV 302

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2028090	394	AT1G23390 "AT1G23390" [Arabido	0.911	0.730	0.46	3.3e-63
TAIR|locus:2087323	383	AT3G24760 "AT3G24760" [Arabido	0.844	0.697	0.262	2.7e-12

TAIR|locus:2028090 AT1G23390 "AT1G23390" [Arabidopsis thaliana (taxid:3702)]

 Score = 645 (232.1 bits), Expect = 3.3e-63, P = 3.3e-63
 Identities = 138/300 (46%), Positives = 184/300 (61%)

Query:    10 GDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIKPWLLLH 69
             GD G     S + GDILE+ILS +PL+DL SAC VS+SWNRAVF SLRR+ K  PWL ++
Sbjct:    11 GDFGEE--ESSIDGDILESILSYLPLLDLDSACQVSKSWNRAVFYSLRRL-KTMPWLFVY 67

Query:    70 TQSQRTMAPYL--TTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHSTLLYTLSPSKLSF 126
               +QR   PY   T A AYD +S  WIE+   + P     + RSSHSTLLY LSP++ SF
Sbjct:    68 --NQRNSPPYTMATMAMAYDPKSEAWIELNTASSPVEHVSVARSSHSTLLYALSPARFSF 125

Query:   127 SFDPLHLAWHHVDAPRVWRTDPXXXXXXXXXXXXXXXCDFEDDPLAVEMYSVDTR--TWE 184
             S D  HL W HV  PRVWR DP               CDFE+D  AVE++ +++    WE
Sbjct:   126 STDAFHLTWQHVAPPRVWRIDPIVAVVGRSLIIAGGVCDFEEDRFAVELFDIESGDGAWE 185

Query:   185 ICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEK 244
              C+SMP  L +SA+STWLSVAV+S ++YVTEK SG+T SF+P T+ W+    L     E 
Sbjct:   186 RCESMPDFLYESASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDL--CPGEC 243

Query:   245 KVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKALLEKLKG 304
              ++   I F+ +RLI  G+ G+  +   +++W+V     S  + + IG MP+  LEKL+G
Sbjct:   244 SLYSRSIGFSVNRLIMAGIIGDEYNPTGIELWEVIDSDESHLKFESIGSMPETYLEKLRG 303

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2087323 AT3G24760 "AT3G24760" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 81/308 (26%), Positives = 129/308 (41%)

Query:     8 PEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSSL----RRVNKIK 63
             PE +S +  N +I   D+ E+IL  +P+  L     VS+ W R++ +SL           
Sbjct:     6 PEIESSTFNNLNI---DVTESILYHLPIPSLVRFTLVSKQW-RSLITSLPPSPSPSPSSP 61

Query:    64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSK 123
             PWL L        + +   + A+D  S+ W+ +  +  SS D L+ S+    L+T +P  
Sbjct:    62 PWLFLF--GIHNTSSFHNQSFAFDPLSNTWLRLPPSSSSS-DHLVGSNR--FLFTTAPR- 115

Query:   124 LSFSFDP-LHLAWHHVDAPRVWRTDPXXXXXXXXXXXXXXXC-----------DFEDDPL 171
               FSF P L   W      R  R +P                           D E+  L
Sbjct:   116 --FSFSPILKPNWRFTSPVRFPRINPLLTVFTTLSNSSKLILVGGSSRIGGLVDIEER-L 172

Query:   172 AVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGW 231
             AV++Y     +WE+C  +PA  +       L+ A+  R+ YV + YS    SF   +  W
Sbjct:   173 AVQIYDPVLDSWELCSPLPADFRSGQDHQTLTSALFKRRFYVFDNYSCFISSFCLDSYTW 232

Query:   232 SGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEI 291
             S    L+       + ++ +   N  L+  G+ G      S  +W  +I+ GS+E   EI
Sbjct:   233 SDVQTLKP----PGLSFAYLNSCNGMLVLGGMCGF-----SFNLW--SIEEGSME-FSEI 280

Query:   292 GEMPKALL 299
               MP+ LL
Sbjct:   281 AVMPEDLL 288


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.131   0.395    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      316       301   0.00096  115 3  11 22  0.40    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  616 (65 KB)
  Total size of DFA:  236 KB (2127 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  23.34u 0.13s 23.47t   Elapsed:  00:00:01
  Total cpu time:  23.34u 0.13s 23.47t   Elapsed:  00:00:01
  Start:  Sat May 11 11:56:19 2013   End:  Sat May 11 11:56:20 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002750001 SubName- Full=Chromosome chr1 scaffold_135, whole genome shotgun sequence; (450 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam13964	50	pfam13964, Kelch_6, Kelch motif	5e-07
pfam01344	46	pfam01344, Kelch_1, Kelch motif	5e-05
pfam00646	48	pfam00646, F-box, F-box domain	3e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	0.001
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 14/47 (29%), Positives = 20/47 (42%)

Query: 144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190
            RT      VG K+ V GG  +       V +Y  +T +WE    +P
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSKASNKVLVYDPETGSWEKLPPLP 47

Length = 50

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 39.6 bits (93), Expect = 5e-05
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 145 RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190
           R+   V ++G K+ V GG  D      +VE+Y  +T TW    SMP
Sbjct: 2   RSGAGVVVLGGKIYVIGG-YDGGQSLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 24 DILEAILSQVPLIDLASACYVSRSWNRAVFSSLRRVNKIK 63
          D+L  ILS++   DL     VS+ W   V S      ++ 
Sbjct: 9  DLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 9/31 (29%), Positives = 11/31 (35%)

Query: 24 DILEAILSQVPLIDLASACYVSRSWNRAVFS 54
          +IL  I S +   DL     V R W      
Sbjct: 7  EILLQIFSYLDPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 24 DILEAILSQVPLIDLASACYVSRSWNRAVFSS 55
          +ILE ILS++   DL     VSR W   + S 
Sbjct: 4  EILEEILSKLDPKDLLRLRKVSRKWRSLIDSH 35

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.93
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.93
PHA02713	557	hypothetical protein; Provisional	99.93
PHA02713	557	hypothetical protein; Provisional	99.92
PHA02790	480	Kelch-like protein; Provisional	99.91
PHA03098	534	kelch-like protein; Provisional	99.9
PLN02153	341	epithiospecifier protein	99.88
PLN02193	470	nitrile-specifier protein	99.86
PHA03098	534	kelch-like protein; Provisional	99.86
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.85
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.85
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.85
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.83
PLN02153	341	epithiospecifier protein	99.83
PHA02790	480	Kelch-like protein; Provisional	99.82
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.8
PLN02193	470	nitrile-specifier protein	99.8
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.78
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	99.74
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.7
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.64
KOG4693	392	consensus Uncharacterized conserved protein, conta	99.62
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.53
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.45
KOG1230	521	consensus Protein containing repeated kelch motifs	99.35
KOG1230	521	consensus Protein containing repeated kelch motifs	99.32
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.17
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.05
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.02
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	98.91
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	98.89
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.77
PF13964	50	Kelch_6: Kelch motif	98.75
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.75
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	98.54
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	98.51
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	98.32
PF13964	50	Kelch_6: Kelch motif	98.29
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	98.19
smart00612	47	Kelch Kelch domain.	98.08
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.07
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.99
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.96
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.82
PF13415	49	Kelch_3: Galactose oxidase, central domain	97.81
smart00612	47	Kelch Kelch domain.	97.76
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	97.7
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	97.62
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	97.54
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	97.46
PLN02772	398	guanylate kinase	97.29
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	97.0
PF13854	42	Kelch_5: Kelch motif	96.94
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	96.77
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	96.31
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	96.22
PLN02772	398	guanylate kinase	96.16
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	95.99
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.23
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	95.16
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.07
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.07
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	95.02
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.91
PF13854	42	Kelch_5: Kelch motif	94.77
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	94.21
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	94.18
PF12768	281	Rax2: Cortical protein marker for cell polarity	93.9
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.64
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	93.37
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	93.37
KOG0316	307	consensus Conserved WD40 repeat-containing protein	92.68
KOG0286	343	consensus G-protein beta subunit [General function	92.18
KOG2055	514	consensus WD40 repeat protein [General function pr	91.81
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	91.62
KOG0310	487	consensus Conserved WD40 repeat-containing protein	91.46
PRK11028	330	6-phosphogluconolactonase; Provisional	90.66
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	90.56
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	90.05
KOG4341	483	consensus F-box protein containing LRR [General fu	89.86
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	89.68
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	89.65
PRK11028	330	6-phosphogluconolactonase; Provisional	89.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.52
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	88.32
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	87.98
KOG0310	487	consensus Conserved WD40 repeat-containing protein	87.6
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	87.41
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	85.86
KOG0316	307	consensus Conserved WD40 repeat-containing protein	85.26
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	82.7
KOG0639	705	consensus Transducin-like enhancer of split protei	81.63
PLN00181	793	protein SPA1-RELATED; Provisional	80.98
KOG2321	703	consensus WD40 repeat protein [General function pr	80.93
PLN00181	793	protein SPA1-RELATED; Provisional	80.52

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.93  E-value=1.1e-24  Score=200.11  Aligned_cols=198  Identities=21%  Similarity=0.331  Sum_probs=167.5

Q ss_pred             CCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEE
Q 040781           78 PYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVV  150 (316)
Q Consensus        78 ~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~  150 (316)
                      ...++++.||+..++|..++  |+.. +.....+..+|.||++||.      +++.+|||.|++|..+++|+.+|..+++
T Consensus       346 ~~l~~ve~YD~~~~~W~~~a--~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv  423 (571)
T KOG4441|consen  346 DRLSSVERYDPRTNQWTPVA--PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGV  423 (571)
T ss_pred             cccceEEEecCCCCceeccC--CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEE
Confidence            45677899999999999986  7643 3344556678999999984      6899999999999999999999999999


Q ss_pred             EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc-----ceEEEee
Q 040781          151 ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS-----GITVSFD  225 (316)
Q Consensus       151 ~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~-----~~i~~yD  225 (316)
                      +.++++||++||.++.......++.||+.+++|+.+++|+.  ++...    ++++.++.||++||..     ..|.+||
T Consensus       424 ~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~--~R~~~----g~a~~~~~iYvvGG~~~~~~~~~VE~yd  497 (571)
T KOG4441|consen  424 AVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT--RRSGF----GVAVLNGKIYVVGGFDGTSALSSVERYD  497 (571)
T ss_pred             EEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc--ccccc----eEEEECCEEEEECCccCCCccceEEEEc
Confidence            99999999999987766577899999999999999999988  88888    9999999999999954     3489999


Q ss_pred             CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCC
Q 040781          226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGE  293 (316)
Q Consensus       226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~  293 (316)
                      +.+++|..+..++.+     .....++..+++||++||.........++.|..+     .++|++...
T Consensus       498 p~~~~W~~v~~m~~~-----rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~-----~d~W~~~~~  555 (571)
T KOG4441|consen  498 PETNQWTMVAPMTSP-----RSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPE-----TDTWTEVTE  555 (571)
T ss_pred             CCCCceeEcccCccc-----cccccEEEECCEEEEEecccCccccceeEEcCCC-----CCceeeCCC
Confidence            999999999877766     2445667789999999998777777888888554     244999877

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.93  E-value=1.4e-24  Score=199.39  Aligned_cols=216  Identities=19%  Similarity=0.227  Sum_probs=172.5

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCce
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAW  135 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w  135 (316)
                      ..++.+++... .......++.||+..+.|..+.  +++. .....++..+|.||++||.       +++++|||.+++|
T Consensus       285 ~~l~~vGG~~~-~~~~~~~ve~yd~~~~~w~~~a--~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W  361 (571)
T KOG4441|consen  285 GKLVAVGGYNR-QGQSLRSVECYDPKTNEWSSLA--PMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW  361 (571)
T ss_pred             CeEEEECCCCC-CCcccceeEEecCCcCcEeecC--CCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence            34555655541 1334566889999999999995  5542 3344556678999999984       5789999999999


Q ss_pred             eecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781          136 HHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE  215 (316)
Q Consensus       136 ~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~  215 (316)
                      ..+|+|..+|..++++.+++.||++||.++.. ....+|.||+.+++|..+++|+.  .+...    ++++.+|.+|++|
T Consensus       362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~m~~--~r~~~----gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAPMLT--RRSGH----GVAVLGGKLYIIG  434 (571)
T ss_pred             eccCCccCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCCCCc--ceeee----EEEEECCEEEEEc
Confidence            99999999999999999999999999987554 67789999999999999999988  88888    9999999999999


Q ss_pred             c------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhh
Q 040781          216 K------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELK  289 (316)
Q Consensus       216 ~------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~  289 (316)
                      |      ..+.+.+|||.+++|+.++.|+.+   .  ....+...+|+||++||.........++.+...     .++|+
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~~---R--~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~-----~~~W~  504 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNTR---R--SGFGVAVLNGKIYVVGGFDGTSALSSVERYDPE-----TNQWT  504 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCcccc---c--ccceEEEECCEEEEECCccCCCccceEEEEcCC-----CCcee
Confidence            9      335789999999999999988776   2  334467789999999998774444556666554     24499


Q ss_pred             hcCCCcHHHH
Q 040781          290 EIGEMPKALL  299 (316)
Q Consensus       290 ~i~~~p~~~~  299 (316)
                      .++.|+....
T Consensus       505 ~v~~m~~~rs  514 (571)
T KOG4441|consen  505 MVAPMTSPRS  514 (571)
T ss_pred             EcccCccccc
Confidence            9988876644

>PHA02713 hypothetical protein; Provisional

Probab=99.93  E-value=5.7e-24  Score=196.11  Aligned_cols=200  Identities=12%  Similarity=0.140  Sum_probs=156.0

Q ss_pred             ceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCCCCCEEEEE
Q 040781           82 TAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV  153 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~  153 (316)
                      .+++||+..++|..++  +++. ......+..++.||++||.       +.+++|||.+++|..+|+|+.+|..++++.+
T Consensus       273 ~v~~yd~~~~~W~~l~--~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        273 CILVYNINTMEYSVIS--TIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CEEEEeCCCCeEEECC--CCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE
Confidence            4678999999999986  4432 2233445568999999983       4589999999999999999999999999999


Q ss_pred             CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc---------------
Q 040781          154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS---------------  218 (316)
Q Consensus       154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~---------------  218 (316)
                      +++||++||..+.. ....+++||+.+++|+.++++|.  ++...    ++++.+|.+|++||..               
T Consensus       351 ~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~--~r~~~----~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~  423 (557)
T PHA02713        351 DDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPI--ALSSY----GMCVLDQYIYIIGGRTEHIDYTSVHHMNSID  423 (557)
T ss_pred             CCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCc--ccccc----cEEEECCEEEEEeCCCccccccccccccccc
Confidence            99999999975432 45679999999999999999988  77666    7888999999999843               


Q ss_pred             --------ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc-ceeeEEEeeccCCchhhhh
Q 040781          219 --------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV-KSLKIWQVNIKGGSLEELK  289 (316)
Q Consensus       219 --------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~-~~~~iw~l~~~~~~~~~W~  289 (316)
                              +.+.+|||++++|..++.|+.+     ...+.++..+|+||++||....... ..++.+..+    +.++|+
T Consensus       424 ~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-----r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~----~~~~W~  494 (557)
T PHA02713        424 MEEDTHSSNKVIRYDTVNNIWETLPNFWTG-----TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN----TYNGWE  494 (557)
T ss_pred             ccccccccceEEEECCCCCeEeecCCCCcc-----cccCcEEEECCEEEEEeCCCCCCccceeEEEecCC----CCCCee
Confidence                    3589999999999999877766     1234566789999999986532221 224444333    213499


Q ss_pred             hcCCCcHHHH
Q 040781          290 EIGEMPKALL  299 (316)
Q Consensus       290 ~i~~~p~~~~  299 (316)
                      .+++||....
T Consensus       495 ~~~~m~~~r~  504 (557)
T PHA02713        495 LITTTESRLS  504 (557)
T ss_pred             EccccCcccc
Confidence            9999997655

>PHA02713 hypothetical protein; Provisional

Probab=99.92  E-value=3.3e-23  Score=191.09  Aligned_cols=193  Identities=10%  Similarity=0.121  Sum_probs=152.8

Q ss_pred             CCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781           80 LTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL  152 (316)
Q Consensus        80 ~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  152 (316)
                      ...++.||+..+.|..++  |++. ......+..+|.||++||.      +++++|||.+++|..+++++.++..++.+.
T Consensus       319 ~~~v~~Yd~~~n~W~~~~--~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~  396 (557)
T PHA02713        319 LNKVYKINIENKIHVELP--PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV  396 (557)
T ss_pred             cceEEEEECCCCeEeeCC--CCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE
Confidence            456889999999999986  6542 2334555678999999984      568999999999999999999999999999


Q ss_pred             ECCEEEEEcCcCCCC-----------------CCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781          153 VGDKVVVAGGACDFE-----------------DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE  215 (316)
Q Consensus       153 ~~~~v~~~gg~~~~~-----------------~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~  215 (316)
                      ++++||++||.....                 .....++.||+.+++|+.+++|+.  ++..+    ++++.++.||++|
T Consensus       397 ~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~--~r~~~----~~~~~~~~IYv~G  470 (557)
T PHA02713        397 LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT--GTIRP----GVVSHKDDIYVVC  470 (557)
T ss_pred             ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc--ccccC----cEEEECCEEEEEe
Confidence            999999999975321                 124679999999999999999988  77777    8889999999999


Q ss_pred             ccc------ceEEEeeCCC-CCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhh
Q 040781          216 KYS------GITVSFDPST-KGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEEL  288 (316)
Q Consensus       216 ~~~------~~i~~yD~~~-~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W  288 (316)
                      |..      ..+.+|||++ ++|..++.||.+     .....++..+|+||++||....   ..++.+...  .   ++|
T Consensus       471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~-----r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~--~---~~W  537 (557)
T PHA02713        471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESR-----LSALHTILHDNTIMMLHCYESY---MLQDTFNVY--T---YEW  537 (557)
T ss_pred             CCCCCCccceeEEEecCCCCCCeeEccccCcc-----cccceeEEECCEEEEEeeecce---eehhhcCcc--c---ccc
Confidence            853      3578999999 899999877766     2345667789999999986542   235555444  3   449


Q ss_pred             hhcCC
Q 040781          289 KEIGE  293 (316)
Q Consensus       289 ~~i~~  293 (316)
                      +.+++
T Consensus       538 ~~~~~  542 (557)
T PHA02713        538 NHICH  542 (557)
T ss_pred             cchhh
Confidence            87755

>PHA02790 Kelch-like protein; Provisional

Probab=99.91  E-value=8.9e-23  Score=185.61  Aligned_cols=193  Identities=15%  Similarity=0.155  Sum_probs=149.3

Q ss_pred             EEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC---ceeeeecCCCCceeecCCC
Q 040781           66 LLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS---KLSFSFDPLHLAWHHVDAP  141 (316)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~  141 (316)
                      +++.++.+  .......++.||+..++|..++  +++. +.....+..++.||++||.   +.+..|||.+++|..+|++
T Consensus       274 lyviGG~~--~~~~~~~v~~Ydp~~~~W~~~~--~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l  349 (480)
T PHA02790        274 VYLIGGWM--NNEIHNNAIAVNYISNNWIPIP--PMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL  349 (480)
T ss_pred             EEEEcCCC--CCCcCCeEEEEECCCCEEEECC--CCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence            34444443  2223456788999999999996  5532 2234445578999999985   5689999999999999999


Q ss_pred             CCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceE
Q 040781          142 RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGIT  221 (316)
Q Consensus       142 ~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i  221 (316)
                      +.+|..++.+.++++||++||....   ...++.||+.+++|+.+++++.  ++..+    ++++.++.||++||.   +
T Consensus       350 ~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~m~~--~r~~~----~~~~~~~~IYv~GG~---~  417 (480)
T PHA02790        350 LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPSTYY--PHYKS----CALVFGRRLFLVGRN---A  417 (480)
T ss_pred             CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCCCCC--ccccc----eEEEECCEEEEECCc---e
Confidence            9999999999999999999996432   2568999999999999999887  66666    778899999999974   5


Q ss_pred             EEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          222 VSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       222 ~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      .+||+++++|+.++.++.+     ...+.++..+|+||++||.........++.+..+
T Consensus       418 e~ydp~~~~W~~~~~m~~~-----r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~  470 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYP-----RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNR  470 (480)
T ss_pred             EEecCCCCcEeEcCCCCCC-----ccccEEEEECCEEEEECCcCCCcccceEEEEECC
Confidence            8899999999999877665     2334566789999999996543323446555554

>PHA03098 kelch-like protein; Provisional

Probab=99.90  E-value=4.2e-22  Score=184.72  Aligned_cols=198  Identities=18%  Similarity=0.286  Sum_probs=153.3

Q ss_pred             CceEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEE
Q 040781           81 TTAHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV  153 (316)
Q Consensus        81 ~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~  153 (316)
                      ..++.||+..++|..++  +++ +......+..++.||++||.      +++++|||.+++|..+++++.+|..++.+..
T Consensus       311 ~~v~~yd~~~~~W~~~~--~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~  388 (534)
T PHA03098        311 NSVVSYDTKTKSWNKVP--ELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV  388 (534)
T ss_pred             ccEEEEeCCCCeeeECC--CCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE
Confidence            45788999999999886  443 33333445568999999984      5789999999999999999999999999899


Q ss_pred             CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc--------ceEEEee
Q 040781          154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS--------GITVSFD  225 (316)
Q Consensus       154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--------~~i~~yD  225 (316)
                      +++||++||..........+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||..        +.+++||
T Consensus       389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  462 (534)
T PHA03098        389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI--SHYGG----CAIYHDGKIYVIGGISYIDNIKVYNIVESYN  462 (534)
T ss_pred             CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc--cccCc----eEEEECCEEEEECCccCCCCCcccceEEEec
Confidence            99999999975444356789999999999999998887  66666    6788899999999842        3489999


Q ss_pred             CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      +.+++|+.++.++.+    + ....++..+|+|+++||........  .++.+|  ... ++|+.+..+|.
T Consensus       463 ~~~~~W~~~~~~~~~----r-~~~~~~~~~~~iyv~GG~~~~~~~~--~v~~yd--~~~-~~W~~~~~~p~  523 (534)
T PHA03098        463 PVTNKWTELSSLNFP----R-INASLCIFNNKIYVVGGDKYEYYIN--EIEVYD--DKT-NTWTLFCKFPK  523 (534)
T ss_pred             CCCCceeeCCCCCcc----c-ccceEEEECCEEEEEcCCcCCcccc--eeEEEe--CCC-CEEEecCCCcc
Confidence            999999998876655    1 2234455699999999876543233  345555  322 34998887665

>PLN02153 epithiospecifier protein

Probab=99.88  E-value=1.6e-20  Score=164.39  Aligned_cols=221  Identities=16%  Similarity=0.167  Sum_probs=151.9

Q ss_pred             eEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC--CCcc---ceeeeecCCEEEEEcCC------ceeeeecCCCC
Q 040781           65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP--SSFD---FLLRSSHSTLLYTLSPS------KLSFSFDPLHL  133 (316)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~--~~~~---~~~~~s~~~~l~~~gg~------~~~~v~np~t~  133 (316)
                      .+++++..........+.++.||+..++|..++  ++  .+..   ....+..++.||++||.      +++++|||.++
T Consensus        34 ~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~  111 (341)
T PLN02153         34 KLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAP--ANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKN  111 (341)
T ss_pred             EEEEECCccCCCCceeCcEEEEECCCCEEEEcC--ccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCC
Confidence            455565542101112356889999999999885  33  1221   22334567999999983      57999999999


Q ss_pred             ceeecCCC-----CCCCCCCEEEEECCEEEEEcCcCCCC-----CCCcEEEEEeCCCCCeeecCCCCc-ccccCccccce
Q 040781          134 AWHHVDAP-----RVWRTDPVVALVGDKVVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQSMPA-VLKDSAASTWL  202 (316)
Q Consensus       134 ~w~~lp~~-----~~~~~~~~~~~~~~~v~~~gg~~~~~-----~~~~~v~vy~~~t~~W~~~~~~p~-~~~~~~~~~~~  202 (316)
                      +|..++++     |.+|..++++..+.+||++||.....     .....+++||+++++|+.+..+.. ..++..+    
T Consensus       112 ~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~----  187 (341)
T PLN02153        112 EWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGA----  187 (341)
T ss_pred             EEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcc----
Confidence            99999866     67888888888999999999975321     123578999999999999865431 1145555    


Q ss_pred             eEEEeCCEEEEEecc-------------cceEEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCC
Q 040781          203 SVAVNSRQLYVTEKY-------------SGITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAE  268 (316)
Q Consensus       203 ~~~~~~~~~y~~~~~-------------~~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~  268 (316)
                      ++++.++.+|+++|.             .+.+.+||+.+++|.++.... .|   ........+..+++|+++||....+
T Consensus       188 ~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P---~~r~~~~~~~~~~~iyv~GG~~~~~  264 (341)
T PLN02153        188 GFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKP---SARSVFAHAVVGKYIIIFGGEVWPD  264 (341)
T ss_pred             eEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCC---CCcceeeeEEECCEEEEECcccCCc
Confidence            677889999998763             256899999999999886432 12   1223344566789999999963221


Q ss_pred             -------CcceeeEEEeeccCCchhhhhhcC-----CCcHH
Q 040781          269 -------DVKSLKIWQVNIKGGSLEELKEIG-----EMPKA  297 (316)
Q Consensus       269 -------~~~~~~iw~l~~~~~~~~~W~~i~-----~~p~~  297 (316)
                             .....++|.+|  ... ++|+++.     ++|+.
T Consensus       265 ~~~~~~~~~~~n~v~~~d--~~~-~~W~~~~~~~~~~~pr~  302 (341)
T PLN02153        265 LKGHLGPGTLSNEGYALD--TET-LVWEKLGECGEPAMPRG  302 (341)
T ss_pred             cccccccccccccEEEEE--cCc-cEEEeccCCCCCCCCCc
Confidence                   11123788888  443 4498775     56654

>PLN02193 nitrile-specifier protein

Probab=99.86  E-value=1.3e-19  Score=164.43  Aligned_cols=219  Identities=12%  Similarity=0.147  Sum_probs=152.1

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCCc---cceeeeecCCEEEEEcCC------ceeeeecCCCCc
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSF---DFLLRSSHSTLLYTLSPS------KLSFSFDPLHLA  134 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~---~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~  134 (316)
                      ..+++++..........+.++.||+..++|..++.....|.   .....+..++.||++||.      +++++|||.+++
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            34555655320011123458899999999998742001221   122334467999999983      689999999999


Q ss_pred             eeecCCC---CCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEeC
Q 040781          135 WHHVDAP---RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVNS  208 (316)
Q Consensus       135 w~~lp~~---~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~~  208 (316)
                      |.+++++   |.+|..++++..+.+||++||..... ....+++||+.+++|+.+..   +|.  .+..+    ++++.+
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~--~R~~~----~~~~~~  328 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFS--IRGGA----GLEVVQ  328 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCC--CCCCc----EEEEEC
Confidence            9999876   77888888888999999999975433 45679999999999998853   333  45555    677889


Q ss_pred             CEEEEEeccc----ceEEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCCC-------cceeeEE
Q 040781          209 RQLYVTEKYS----GITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAED-------VKSLKIW  276 (316)
Q Consensus       209 ~~~y~~~~~~----~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~-------~~~~~iw  276 (316)
                      +.+|+++|..    +.+++||+.+++|+.+..+. .|   .....+..+..+++|+++||....+.       ...-++|
T Consensus       329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P---~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~  405 (470)
T PLN02193        329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRP---SERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTF  405 (470)
T ss_pred             CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCC---CCcceeEEEEECCEEEEECCccCCccccccCccceeccEE
Confidence            9999998843    57899999999999887542 12   12233445567899999998643211       1113578


Q ss_pred             EeeccCCchhhhhhcCCCc
Q 040781          277 QVNIKGGSLEELKEIGEMP  295 (316)
Q Consensus       277 ~l~~~~~~~~~W~~i~~~p  295 (316)
                      .+|  ..+ .+|+++..++
T Consensus       406 ~~D--~~t-~~W~~~~~~~  421 (470)
T PLN02193        406 ALD--TET-LQWERLDKFG  421 (470)
T ss_pred             EEE--cCc-CEEEEcccCC
Confidence            888  544 3499876554

>PHA03098 kelch-like protein; Provisional

Probab=99.86  E-value=5e-20  Score=170.94  Aligned_cols=197  Identities=13%  Similarity=0.140  Sum_probs=148.5

Q ss_pred             EEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCE
Q 040781           84 HAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDK  156 (316)
Q Consensus        84 ~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~  156 (316)
                      ..|++...+|..++  +.+..........++.||++||.       +++++|||.+++|..+|+++.+|..++++..+++
T Consensus       267 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~  344 (534)
T PHA03098        267 ITNYSPLSEINTII--DIHYVYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNR  344 (534)
T ss_pred             eecchhhhhccccc--CccccccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCE
Confidence            45777777887764  32212222444567999999983       4789999999999999999999999999999999


Q ss_pred             EEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEEEeeCCCCC
Q 040781          157 VVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITVSFDPSTKG  230 (316)
Q Consensus       157 v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~~yD~~~~~  230 (316)
                      +|++||.... .....+++||+.+++|+.++++|.  ++..+    ++++.++.+|++||.      .+.+..||+.+++
T Consensus       345 lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~--~r~~~----~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~  417 (534)
T PHA03098        345 IYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIF--PRYNP----CVVNVNNLIYVIGGISKNDELLKTVECFSLNTNK  417 (534)
T ss_pred             EEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCc--CCccc----eEEEECCEEEEECCcCCCCcccceEEEEeCCCCe
Confidence            9999997633 255779999999999999999887  77666    778899999999983      2568999999999


Q ss_pred             ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc-ceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          231 WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV-KSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       231 W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~-~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      |..+..+|.+    . ..+..+..+|+||++||....... ..-.+|.+|  ..+ ++|+++..||..
T Consensus       418 W~~~~~~p~~----r-~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd--~~~-~~W~~~~~~~~~  477 (534)
T PHA03098        418 WSKGSPLPIS----H-YGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYN--PVT-NKWTELSSLNFP  477 (534)
T ss_pred             eeecCCCCcc----c-cCceEEEECCEEEEECCccCCCCCcccceEEEec--CCC-CceeeCCCCCcc
Confidence            9998866655    1 233456679999999986543211 112367776  333 449999888753

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.85  E-value=1.6e-19  Score=156.96  Aligned_cols=193  Identities=12%  Similarity=0.088  Sum_probs=137.1

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCce----eEccCCCCCCc-cceeeeecCCEEEEEcCC------ceeeeecCCC
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVW----IEIKNNQPSSF-DFLLRSSHSTLLYTLSPS------KLSFSFDPLH  132 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w----~~~~~~~~~~~-~~~~~~s~~~~l~~~gg~------~~~~v~np~t  132 (316)
                      ..+++++..+  .......++.||+..++|    ..++  +++.. .....+..++.||++||.      +++++|||.+
T Consensus        73 ~~lyviGG~~--~~~~~~~v~~~d~~~~~w~~~~~~~~--~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~  148 (323)
T TIGR03548        73 NGIYYIGGSN--SSERFSSVYRITLDESKEELICETIG--NLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET  148 (323)
T ss_pred             CEEEEEcCCC--CCCCceeEEEEEEcCCceeeeeeEcC--CCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence            4455566554  333456688899998887    5554  44322 233445567999999983      6899999999


Q ss_pred             CceeecCCCC-CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc-cccCccccceeEEEeCCE
Q 040781          133 LAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV-LKDSAASTWLSVAVNSRQ  210 (316)
Q Consensus       133 ~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~-~~~~~~~~~~~~~~~~~~  210 (316)
                      ++|..+++++ .+|..+.++.++.+||++||....  ....+++||+.+++|+.+.+++.. .++... ...++++.++.
T Consensus       149 ~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~-~~~~~~~~~~~  225 (323)
T TIGR03548       149 QEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADPTTDSEPISLL-GAASIKINESL  225 (323)
T ss_pred             CCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCc--cccceEEEecCCCeeEECCCCCCCCCceecc-ceeEEEECCCE
Confidence            9999998776 467777777899999999997532  234578999999999999765321 121111 01145566899


Q ss_pred             EEEEeccc-------------------------------------ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEe
Q 040781          211 LYVTEKYS-------------------------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITF  253 (316)
Q Consensus       211 ~y~~~~~~-------------------------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~  253 (316)
                      +|++||..                                     +.+++||+.+++|+.+..+|..    ......++.
T Consensus       226 iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----~r~~~~~~~  301 (323)
T TIGR03548       226 LLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFF----ARCGAALLL  301 (323)
T ss_pred             EEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEccccccc----ccCchheEE
Confidence            99999843                                     4689999999999998866533    223345678


Q ss_pred             eCCEEEEEecCCCC
Q 040781          254 ANDRLIAVGLTGEA  267 (316)
Q Consensus       254 ~~g~L~v~g~~~~~  267 (316)
                      .+++||++||...+
T Consensus       302 ~~~~iyv~GG~~~p  315 (323)
T TIGR03548       302 TGNNIFSINGELKP  315 (323)
T ss_pred             ECCEEEEEeccccC
Confidence            89999999986543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.85  E-value=3.4e-19  Score=156.53  Aligned_cols=205  Identities=15%  Similarity=0.191  Sum_probs=142.3

Q ss_pred             ceEEeeC--CCCceeEccCCCCC--CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecC-CCCCC
Q 040781           82 TAHAYDA--RSHVWIEIKNNQPS--SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVD-APRVW  144 (316)
Q Consensus        82 ~~~~~d~--~~~~w~~~~~~~~~--~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp-~~~~~  144 (316)
                      ..+.||+  ..++|..++  +++  ++.....+..++.||++||.            +++++|||.+++|..++ +++..
T Consensus        30 ~~~~~d~~~~~~~W~~l~--~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~  107 (346)
T TIGR03547        30 SWYKLDLKKPSKGWQKIA--DFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVG  107 (346)
T ss_pred             eeEEEECCCCCCCceECC--CCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCc
Confidence            3677885  577899986  543  23334455678999999984            35889999999999997 34455


Q ss_pred             CCCCEEE-EECCEEEEEcCcCCCC---------------------------------CCCcEEEEEeCCCCCeeecCCCC
Q 040781          145 RTDPVVA-LVGDKVVVAGGACDFE---------------------------------DDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       145 ~~~~~~~-~~~~~v~~~gg~~~~~---------------------------------~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +..++.+ .++.+||++||.....                                 .....+++||+.+++|+.+.++|
T Consensus       108 ~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p  187 (346)
T TIGR03547       108 LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENP  187 (346)
T ss_pred             ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCC
Confidence            5555444 6899999999964210                                 01367999999999999999887


Q ss_pred             cccccCccccceeEEEeCCEEEEEeccc------ceEEEee--CCCCCccCCCcCCCCCc--ccceeeeeeEeeCCEEEE
Q 040781          191 AVLKDSAASTWLSVAVNSRQLYVTEKYS------GITVSFD--PSTKGWSGPFHLRQFDH--EKKVFYSVITFANDRLIA  260 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~------~~i~~yD--~~~~~W~~~~~l~~~~~--~~~~~~~~l~~~~g~L~v  260 (316)
                      . .++..+    ++++.+++||++||..      ..+..||  +++++|..+..++.+..  ......+..+..+|+||+
T Consensus       188 ~-~~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv  262 (346)
T TIGR03547       188 F-LGTAGS----AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLV  262 (346)
T ss_pred             C-CcCCCc----eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEE
Confidence            4 145555    7788899999999842      2344554  57779999988876511  011122335567999999


Q ss_pred             EecCCCCC-----------------CcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781          261 VGLTGEAE-----------------DVKSLKIWQVNIKGGSLEELKEIGEMPKAL  298 (316)
Q Consensus       261 ~g~~~~~~-----------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~  298 (316)
                      +||.....                 ....+++|..+  .   ++|+.+..||...
T Consensus       263 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~--~---~~W~~~~~lp~~~  312 (346)
T TIGR03547       263 AGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD--N---GKWSKVGKLPQGL  312 (346)
T ss_pred             eecCCCCCchhhhhcCCccccCCCCceeEeeEEEec--C---CcccccCCCCCCc
Confidence            99864211                 01246778776  4   3499999998653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.85  E-value=5.6e-19  Score=155.15  Aligned_cols=179  Identities=16%  Similarity=0.203  Sum_probs=129.9

Q ss_pred             CCceEEeeCCCCceeEccCCCCCCccc-eeee-ecCCEEEEEcCC-----------------------------------
Q 040781           80 LTTAHAYDARSHVWIEIKNNQPSSFDF-LLRS-SHSTLLYTLSPS-----------------------------------  122 (316)
Q Consensus        80 ~~~~~~~d~~~~~w~~~~~~~~~~~~~-~~~~-s~~~~l~~~gg~-----------------------------------  122 (316)
                      ...++.||+..++|..++. +++.... .... ..++.||++||.                                   
T Consensus        84 ~~~v~~Yd~~~~~W~~~~~-~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (346)
T TIGR03547        84 FDDVYRYDPKKNSWQKLDT-RSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPE  162 (346)
T ss_pred             cccEEEEECCCCEEecCCC-CCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChh
Confidence            4568899999999999852 2221111 1222 478999999984                                   


Q ss_pred             -----ceeeeecCCCCceeecCCCCC-CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEe--CCCCCeeecCCCCcccc
Q 040781          123 -----KLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYS--VDTRTWEICQSMPAVLK  194 (316)
Q Consensus       123 -----~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~--~~t~~W~~~~~~p~~~~  194 (316)
                           +.+++|||.|++|..+++++. ++..++++.++++||++||..........+++|+  +.+++|..+.+||.  +
T Consensus       163 ~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~--~  240 (346)
T TIGR03547       163 DYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP--P  240 (346)
T ss_pred             HcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC--C
Confidence                 468899999999999998885 6777888889999999999754322223455565  56789999988876  3


Q ss_pred             cCc--c-ccceeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCcccceeee
Q 040781          195 DSA--A-STWLSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYS  249 (316)
Q Consensus       195 ~~~--~-~~~~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~  249 (316)
                      +..  . .....+++.++.||++||..                      ..+.+||+++++|+.+..+|.+    . ..+
T Consensus       241 r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----~-~~~  315 (346)
T TIGR03547       241 KSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG----L-AYG  315 (346)
T ss_pred             CCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC----c-eee
Confidence            311  0 00113567899999999842                      2478999999999999888766    2 334


Q ss_pred             eeEeeCCEEEEEecCCC
Q 040781          250 VITFANDRLIAVGLTGE  266 (316)
Q Consensus       250 ~l~~~~g~L~v~g~~~~  266 (316)
                      ..+..+|+|+++||...
T Consensus       316 ~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       316 VSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EEEEcCCEEEEEeccCC
Confidence            55678999999998754

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.83  E-value=1.6e-18  Score=150.72  Aligned_cols=176  Identities=12%  Similarity=0.099  Sum_probs=127.0

Q ss_pred             ceEEee-CCCC-ceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCce----eecCCCCCCCCCC
Q 040781           82 TAHAYD-ARSH-VWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAW----HHVDAPRVWRTDP  148 (316)
Q Consensus        82 ~~~~~d-~~~~-~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w----~~lp~~~~~~~~~  148 (316)
                      .++.++ +... +|..++  +++. ......+..++.||++||.      +++++||+.+++|    ..++++|.++..+
T Consensus        40 ~v~~~~~~~~~~~W~~~~--~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~  117 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDG--QLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG  117 (323)
T ss_pred             eeEEEecCCCceeEEEcc--cCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence            345554 3322 698875  4432 2223344557899999984      6889999999987    7789999999888


Q ss_pred             EEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc----ceEEEe
Q 040781          149 VVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS----GITVSF  224 (316)
Q Consensus       149 ~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~----~~i~~y  224 (316)
                      +.++++++||++||..+.. ....+++||+.+++|+.++++|.. .+..+    .+++.++.+|++||..    ..+++|
T Consensus       118 ~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~----~~~~~~~~iYv~GG~~~~~~~~~~~y  191 (323)
T TIGR03548       118 SACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPDFPGE-PRVQP----VCVKLQNELYVFGGGSNIAYTDGYKY  191 (323)
T ss_pred             eEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCCCCCC-CCCcc----eEEEECCEEEEEcCCCCccccceEEE
Confidence            8889999999999964332 457899999999999999887641 45555    6677899999999853    246899


Q ss_pred             eCCCCCccCCCcCCCC-CcccceeeeeeEeeCCEEEEEecCC
Q 040781          225 DPSTKGWSGPFHLRQF-DHEKKVFYSVITFANDRLIAVGLTG  265 (316)
Q Consensus       225 D~~~~~W~~~~~l~~~-~~~~~~~~~~l~~~~g~L~v~g~~~  265 (316)
                      |+++++|+.+..++.. ..........++..+++|+++||..
T Consensus       192 d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       192 SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            9999999988765321 0001122334455689999999865

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PLN02153 epithiospecifier protein

Probab=99.83  E-value=1.6e-18  Score=151.85  Aligned_cols=220  Identities=15%  Similarity=0.188  Sum_probs=147.0

Q ss_pred             hhhHHHhhhhHHHHHHhhcc-cccc-------CCCCCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC-----C
Q 040781           36 IDLASACYVSRSWNRAVFSS-LRRV-------NKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP-----S  102 (316)
Q Consensus        36 ~~l~r~r~VcK~W~~li~s~-~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~-----~  102 (316)
                      .++.++-...+.|..+.... ..+.       ......+++++...  .....+.++.||+..++|..++  ++     +
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~--~~~~~~~p  125 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRD--EKREFSDFYSYDTVKNEWTFLT--KLDEEGGP  125 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCC--CCCccCcEEEEECCCCEEEEec--cCCCCCCC
Confidence            34555555667787654321 1010       01133456666654  3334567899999999999885  33     1


Q ss_pred             -CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCC---CCCCCCEEEEECCEEEEEcCcCCC
Q 040781          103 -SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPR---VWRTDPVVALVGDKVVVAGGACDF  166 (316)
Q Consensus       103 -~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~---~~~~~~~~~~~~~~v~~~gg~~~~  166 (316)
                       +......+..++.||++||.            +++++|||.+++|..++++.   .+|..+.+++++.++|++||....
T Consensus       126 ~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~  205 (341)
T PLN02153        126 EARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATS  205 (341)
T ss_pred             CCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccc
Confidence             12222334567899999984            25889999999999998654   677777888899999999975321


Q ss_pred             -------CCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEeCCEEEEEeccc--------------ceEE
Q 040781          167 -------EDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVNSRQLYVTEKYS--------------GITV  222 (316)
Q Consensus       167 -------~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--------------~~i~  222 (316)
                             ......+++||+.+++|+.+..   +|.  ++...    ++++.++.+|++||..              +.++
T Consensus       206 ~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~  279 (341)
T PLN02153        206 ILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPS--ARSVF----AHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGY  279 (341)
T ss_pred             cccCCccceecCceEEEEcCCCcEEeccccCCCCC--Cccee----eeEEECCEEEEECcccCCccccccccccccccEE
Confidence                   1124679999999999999864   454  55555    7788899999999942              3689


Q ss_pred             EeeCCCCCccCCCcC---CCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781          223 SFDPSTKGWSGPFHL---RQFDHEKKVFYSVITFANDRLIAVGLTGE  266 (316)
Q Consensus       223 ~yD~~~~~W~~~~~l---~~~~~~~~~~~~~l~~~~g~L~v~g~~~~  266 (316)
                      +||+++++|+.+...   +.|.. .....+..+..+++|+++||...
T Consensus       280 ~~d~~~~~W~~~~~~~~~~~pr~-~~~~~~~~v~~~~~~~~~gG~~~  325 (341)
T PLN02153        280 ALDTETLVWEKLGECGEPAMPRG-WTAYTTATVYGKNGLLMHGGKLP  325 (341)
T ss_pred             EEEcCccEEEeccCCCCCCCCCc-cccccccccCCcceEEEEcCcCC
Confidence            999999999987632   22310 11112333444569999998754

>PHA02790 Kelch-like protein; Provisional

Probab=99.82  E-value=9.3e-19  Score=159.38  Aligned_cols=158  Identities=16%  Similarity=0.169  Sum_probs=129.4

Q ss_pred             cCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781          112 HSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI  185 (316)
Q Consensus       112 ~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~  185 (316)
                      .++.||++||.      +.++.|||.+++|..+++++.+|..++.+..+++||++||..+    ...++.||+.+++|..
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~----~~sve~ydp~~n~W~~  345 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN----PTSVERWFHGDAAWVN  345 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC----CCceEEEECCCCeEEE
Confidence            57899999984      4688999999999999999999998888899999999999642    2458999999999999


Q ss_pred             cCCCCcccccCccccceeEEEeCCEEEEEeccc---ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEe
Q 040781          186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS---GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVG  262 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~---~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g  262 (316)
                      ++++|.  ++...    ++++.+|.+|++||..   +.+..||+.+++|+.++.++.|    + .....+..+|+||++|
T Consensus       346 ~~~l~~--~r~~~----~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~----r-~~~~~~~~~~~IYv~G  414 (480)
T PHA02790        346 MPSLLK--PRCNP----AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP----H-YKSCALVFGRRLFLVG  414 (480)
T ss_pred             CCCCCC--CCccc----EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc----c-ccceEEEECCEEEEEC
Confidence            999987  77666    7888999999999943   4578999999999998877766    2 2234557799999999


Q ss_pred             cCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          263 LTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       263 ~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      |.        .+++..+  .   ++|+.+++||..
T Consensus       415 G~--------~e~ydp~--~---~~W~~~~~m~~~  436 (480)
T PHA02790        415 RN--------AEFYCES--S---NTWTLIDDPIYP  436 (480)
T ss_pred             Cc--------eEEecCC--C---CcEeEcCCCCCC
Confidence            63        4555554  2   459999998864

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.80  E-value=8.1e-18  Score=149.02  Aligned_cols=190  Identities=15%  Similarity=0.204  Sum_probs=131.7

Q ss_pred             CCceEEeeCCCCceeEccCCCCCCccc--eeeee-cCCEEEEEcCC----------------------------------
Q 040781           80 LTTAHAYDARSHVWIEIKNNQPSSFDF--LLRSS-HSTLLYTLSPS----------------------------------  122 (316)
Q Consensus        80 ~~~~~~~d~~~~~w~~~~~~~~~~~~~--~~~~s-~~~~l~~~gg~----------------------------------  122 (316)
                      ...+++||+..++|..++  +..+...  ..... .++.||++||.                                  
T Consensus       105 ~~~v~~YD~~~n~W~~~~--~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~  182 (376)
T PRK14131        105 FDDVYKYDPKTNSWQKLD--TRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKP  182 (376)
T ss_pred             cccEEEEeCCCCEEEeCC--CCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCCh
Confidence            456889999999999985  3222211  22222 67999999984                                  


Q ss_pred             ------ceeeeecCCCCceeecCCCCC-CCCCCEEEEECCEEEEEcCcCCCCCCCcEE--EEEeCCCCCeeecCCCCccc
Q 040781          123 ------KLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVGDKVVVAGGACDFEDDPLAV--EMYSVDTRTWEICQSMPAVL  193 (316)
Q Consensus       123 ------~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v--~vy~~~t~~W~~~~~~p~~~  193 (316)
                            +.+++|||.+++|..+++++. ++..++++..+++||++||..........+  ..||+++++|+.+.++|.  
T Consensus       183 ~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--  260 (376)
T PRK14131        183 EDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPP--  260 (376)
T ss_pred             hhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCC--
Confidence                  358999999999999998885 677778888899999999864332122222  345778999999988876  


Q ss_pred             ccCcc--ccc--eeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCccccee
Q 040781          194 KDSAA--STW--LSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVF  247 (316)
Q Consensus       194 ~~~~~--~~~--~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~  247 (316)
                      ++...  ...  ..+++.++.||++||..                      ..+.+||+++++|+.+..+|.+    + .
T Consensus       261 ~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~----r-~  335 (376)
T PRK14131        261 APGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG----L-A  335 (376)
T ss_pred             CCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC----c-c
Confidence            33211  000  12466789999999842                      1356899999999998877766    2 2


Q ss_pred             eeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          248 YSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       248 ~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ....+..+|+||++||..... ...-+++.++
T Consensus       336 ~~~av~~~~~iyv~GG~~~~~-~~~~~v~~~~  366 (376)
T PRK14131        336 YGVSVSWNNGVLLIGGETAGG-KAVSDVTLLS  366 (376)
T ss_pred             ceEEEEeCCEEEEEcCCCCCC-cEeeeEEEEE
Confidence            345677899999999865421 2223445554

>PLN02193 nitrile-specifier protein

Probab=99.80  E-value=1.9e-17  Score=150.47  Aligned_cols=202  Identities=14%  Similarity=0.157  Sum_probs=141.8

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCC---C-CccceeeeecCCEEEEEcCC------ceeeeecCCCC
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQP---S-SFDFLLRSSHSTLLYTLSPS------KLSFSFDPLHL  133 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~---~-~~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~  133 (316)
                      ..+++++..+  .....+++++||+..++|..++  ++   + ++.....+..++.||++||.      +++++|||.++
T Consensus       229 ~~lYvfGG~~--~~~~~ndv~~yD~~t~~W~~l~--~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~  304 (470)
T PLN02193        229 STLYVFGGRD--ASRQYNGFYSFDTTTNEWKLLT--PVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDK  304 (470)
T ss_pred             CEEEEECCCC--CCCCCccEEEEECCCCEEEEcC--cCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCC
Confidence            3456666654  3334567899999999999985  43   1 22223334467899999984      56899999999


Q ss_pred             ceeecCC---CCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC---CcccccCccccceeEEEe
Q 040781          134 AWHHVDA---PRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM---PAVLKDSAASTWLSVAVN  207 (316)
Q Consensus       134 ~w~~lp~---~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~---p~~~~~~~~~~~~~~~~~  207 (316)
                      +|..+++   ++.+|..+.+++++.++|++||....  ....+++||+.+++|+.+..+   |.  ++..+    ++++.
T Consensus       305 ~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~g~~P~--~R~~~----~~~~~  376 (470)
T PLN02193        305 KWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETFGVRPS--ERSVF----ASAAV  376 (470)
T ss_pred             EEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC--ccCceEEEECCCCEEEEeccCCCCCC--Cccee----EEEEE
Confidence            9999874   45677788888899999999986533  357799999999999998654   44  55555    67788


Q ss_pred             CCEEEEEeccc--------------ceEEEeeCCCCCccCCCcCCC----CCcccceeeeee--EeeCCEEEEEecCCCC
Q 040781          208 SRQLYVTEKYS--------------GITVSFDPSTKGWSGPFHLRQ----FDHEKKVFYSVI--TFANDRLIAVGLTGEA  267 (316)
Q Consensus       208 ~~~~y~~~~~~--------------~~i~~yD~~~~~W~~~~~l~~----~~~~~~~~~~~l--~~~~g~L~v~g~~~~~  267 (316)
                      ++.+|++||..              +.+++||+.+++|+.+..+..    |.. ........  ...++.|+++||....
T Consensus       377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~-R~~~~~~~~~~~~~~~~~~fGG~~~~  455 (470)
T PLN02193        377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSS-RGWTASTTGTIDGKKGLVMHGGKAPT  455 (470)
T ss_pred             CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCC-CccccceeeEEcCCceEEEEcCCCCc
Confidence            99999999942              368999999999998875541    200 11111112  2234569999987543


Q ss_pred             CCcceeeEEEee
Q 040781          268 EDVKSLKIWQVN  279 (316)
Q Consensus       268 ~~~~~~~iw~l~  279 (316)
                      . ..--++|.++
T Consensus       456 ~-~~~~D~~~~~  466 (470)
T PLN02193        456 N-DRFDDLFFYG  466 (470)
T ss_pred             c-ccccceEEEe
Confidence            2 2225668877

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.78  E-value=2e-17  Score=146.58  Aligned_cols=178  Identities=17%  Similarity=0.229  Sum_probs=127.1

Q ss_pred             eeeecCCEEEEEcCC--ceeeeecCC--CCceeecCCCC-CCCCCCEEEEECCEEEEEcCcCC-CC----CCCcEEEEEe
Q 040781          108 LRSSHSTLLYTLSPS--KLSFSFDPL--HLAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACD-FE----DDPLAVEMYS  177 (316)
Q Consensus       108 ~~~s~~~~l~~~gg~--~~~~v~np~--t~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~-~~----~~~~~v~vy~  177 (316)
                      ..+..++.||+.||.  +.++++|+.  +++|..+++++ .+|..++++..+.+||++||... ..    .....+++||
T Consensus        33 ~~~~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD  112 (376)
T PRK14131         33 TGAIDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYD  112 (376)
T ss_pred             eEEEECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEe
Confidence            445567999998875  668888875  57999999876 47777788889999999999754 11    1346799999


Q ss_pred             CCCCCeeecCC-CCcccccCccccceeEEE-eCCEEEEEeccc-------------------------------------
Q 040781          178 VDTRTWEICQS-MPAVLKDSAASTWLSVAV-NSRQLYVTEKYS-------------------------------------  218 (316)
Q Consensus       178 ~~t~~W~~~~~-~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~-------------------------------------  218 (316)
                      +.+++|+.+.. .|.  .+..+    ++++ .+++||++||..                                     
T Consensus       113 ~~~n~W~~~~~~~p~--~~~~~----~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  186 (376)
T PRK14131        113 PKTNSWQKLDTRSPV--GLAGH----VAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYF  186 (376)
T ss_pred             CCCCEEEeCCCCCCC--cccce----EEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcC
Confidence            99999999864 333  33333    3333 799999999842                                     


Q ss_pred             --ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          219 --GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       219 --~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                        +.+++||+.+++|..+..+|.+    ......++..+++||++||..... ....++|.++.+... .+|.++..||.
T Consensus       187 ~~~~v~~YD~~t~~W~~~~~~p~~----~~~~~a~v~~~~~iYv~GG~~~~~-~~~~~~~~~~~~~~~-~~W~~~~~~p~  260 (376)
T PRK14131        187 FNKEVLSYDPSTNQWKNAGESPFL----GTAGSAVVIKGNKLWLINGEIKPG-LRTDAVKQGKFTGNN-LKWQKLPDLPP  260 (376)
T ss_pred             cCceEEEEECCCCeeeECCcCCCC----CCCcceEEEECCEEEEEeeeECCC-cCChhheEEEecCCC-cceeecCCCCC
Confidence              4689999999999998877653    223345567799999999854322 223455554411333 34999999986


Q ss_pred             H
Q 040781          297 A  297 (316)
Q Consensus       297 ~  297 (316)
                      .
T Consensus       261 ~  261 (376)
T PRK14131        261 A  261 (376)
T ss_pred             C
Confidence            4

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=99.74  E-value=8.6e-17  Score=133.04  Aligned_cols=172  Identities=15%  Similarity=0.211  Sum_probs=110.3

Q ss_pred             ecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC-----EEEE----ECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          111 SHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP-----VVAL----VGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       111 s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~-----~~~~----~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      +++|+||+..+ ..++||||+|++|+.||+++.++...     +++.    ..|||+.+....... ....++||+++++
T Consensus         3 sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~   80 (230)
T TIGR01640         3 PCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSN   80 (230)
T ss_pred             ccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCC
Confidence            35688887765 68999999999999998665432111     1111    136888776432111 3467999999999


Q ss_pred             CeeecCCCCcccccCccccceeEEEeCCEEEEEecc----cc-eEEEeeCCCCCccC-CCcCCCCCcccceeeeeeEeeC
Q 040781          182 TWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY----SG-ITVSFDPSTKGWSG-PFHLRQFDHEKKVFYSVITFAN  255 (316)
Q Consensus       182 ~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~----~~-~i~~yD~~~~~W~~-~~~l~~~~~~~~~~~~~l~~~~  255 (316)
                      +|+.+...+........    ++ +.+|.+|++...    .. .|++||+++++|++ ++ +|.... .......|+..+
T Consensus        81 ~Wr~~~~~~~~~~~~~~----~v-~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~-~~~~~~~L~~~~  153 (230)
T TIGR01640        81 SWRTIECSPPHHPLKSR----GV-CINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNS-DSVDYLSLINYK  153 (230)
T ss_pred             CccccccCCCCccccCC----eE-EECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCcccc-ccccceEEEEEC
Confidence            99998643321111111    44 456666665432    11 69999999999995 44 443311 111234678889


Q ss_pred             CEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          256 DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       256 g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      |+|+++......   ..++||.|+  +++.++|++...+|.
T Consensus       154 G~L~~v~~~~~~---~~~~IWvl~--d~~~~~W~k~~~i~~  189 (230)
T TIGR01640       154 GKLAVLKQKKDT---NNFDLWVLN--DAGKQEWSKLFTVPI  189 (230)
T ss_pred             CEEEEEEecCCC---CcEEEEEEC--CCCCCceeEEEEEcC
Confidence            999999864321   239999998  665556998777764

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.70  E-value=4.8e-16  Score=123.92  Aligned_cols=200  Identities=15%  Similarity=0.179  Sum_probs=142.8

Q ss_pred             CceEEeeCCCCceeEccCCCCC---------Cccceeeeec-----CCEEEEEcCC-------ceeeeecCCCCceeecC
Q 040781           81 TTAHAYDARSHVWIEIKNNQPS---------SFDFLLRSSH-----STLLYTLSPS-------KLSFSFDPLHLAWHHVD  139 (316)
Q Consensus        81 ~~~~~~d~~~~~w~~~~~~~~~---------~~~~~~~~s~-----~~~l~~~gg~-------~~~~v~np~t~~w~~lp  139 (316)
                      .+++.+|...-+|..++  |-+         +..+..+..|     .+.+|+.||.       +.++.|||.|++|++..
T Consensus        44 iDVH~lNa~~~RWtk~p--p~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~  121 (392)
T KOG4693|consen   44 IDVHVLNAENYRWTKMP--PGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPE  121 (392)
T ss_pred             ceeEEeeccceeEEecC--cccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccc
Confidence            45777888888999986  421         1112222222     3888999983       67999999999998753


Q ss_pred             ---CCCCCCCCCEEEEECCEEEEEcCcCCC-CCCCcEEEEEeCCCCCeeecCC--CCcccccCccccceeEEEeCCEEEE
Q 040781          140 ---APRVWRTDPVVALVGDKVVVAGGACDF-EDDPLAVEMYSVDTRTWEICQS--MPAVLKDSAASTWLSVAVNSRQLYV  213 (316)
Q Consensus       140 ---~~~~~~~~~~~~~~~~~v~~~gg~~~~-~~~~~~v~vy~~~t~~W~~~~~--~p~~~~~~~~~~~~~~~~~~~~~y~  213 (316)
                         -.|..|..+..++.+...|++||+.+. ......++++|..|.+|+.+..  .|.. -+..+    +..+.++.+|+
T Consensus       122 v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Ppr-wRDFH----~a~~~~~~MYi  196 (392)
T KOG4693|consen  122 VEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPR-WRDFH----TASVIDGMMYI  196 (392)
T ss_pred             eeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCch-hhhhh----hhhhccceEEE
Confidence               467788899999999999999997543 2456789999999999999943  3332 23333    55667899999


Q ss_pred             Eec--------------ccceEEEeeCCCCCccCCCcCCC-CCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781          214 TEK--------------YSGITVSFDPSTKGWSGPFHLRQ-FDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQV  278 (316)
Q Consensus       214 ~~~--------------~~~~i~~yD~~~~~W~~~~~l~~-~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l  278 (316)
                      +||              +.+.|+++|+.++.|...+.-+. |   .....+....++|++|++||+...-+.---++|.+
T Consensus       197 FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P---~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~F  273 (392)
T KOG4693|consen  197 FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKP---GGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCF  273 (392)
T ss_pred             eccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCC---CcccccceEEEcceEEEecccchhhhhhhcceeec
Confidence            998              23579999999999987654221 3   23344566678999999998765444444788999


Q ss_pred             eccCCchhhhhhcCC
Q 040781          279 NIKGGSLEELKEIGE  293 (316)
Q Consensus       279 ~~~~~~~~~W~~i~~  293 (316)
                      |  ..+ ..|..|..
T Consensus       274 d--P~t-~~W~~I~~  285 (392)
T KOG4693|consen  274 D--PKT-SMWSVISV  285 (392)
T ss_pred             c--ccc-chheeeec
Confidence            8  544 44976643

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.64  E-value=3e-14  Score=129.42  Aligned_cols=202  Identities=17%  Similarity=0.158  Sum_probs=147.5

Q ss_pred             ceEEeeCCCCceeEccCCC-CC-CccceeeeecCCEEEEEcCCc-------eeeeecCCCCceeecC---CCCCCCCCCE
Q 040781           82 TAHAYDARSHVWIEIKNNQ-PS-SFDFLLRSSHSTLLYTLSPSK-------LSFSFDPLHLAWHHVD---APRVWRTDPV  149 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~-~~-~~~~~~~~s~~~~l~~~gg~~-------~~~v~np~t~~w~~lp---~~~~~~~~~~  149 (316)
                      +++.+|.....|.....-- .+ +......+..+..||++||..       .++.||+.|++|..+.   .+|.+|..|+
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs  168 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS  168 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence            3788999988887653201 11 111223333458999999864       8999999999999875   4678899999


Q ss_pred             EEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEeCCEEEEEecc------cce
Q 040781          150 VALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGI  220 (316)
Q Consensus       150 ~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~  220 (316)
                      ++.++.++|++||.....+....+++||.++.+|.++.   ..|.  ++..+    ++++.++.+|+++|.      .+.
T Consensus       169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~--pR~gH----~~~~~~~~~~v~gG~~~~~~~l~D  242 (482)
T KOG0379|consen  169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS--PRYGH----AMVVVGNKLLVFGGGDDGDVYLND  242 (482)
T ss_pred             EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC--CCCCc----eEEEECCeEEEEeccccCCceecc
Confidence            99999999999998766556788999999999999983   3444  77888    889999999999873      357


Q ss_pred             EEEeeCCCCCccCCCcCC-CCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCc
Q 040781          221 TVSFDPSTKGWSGPFHLR-QFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMP  295 (316)
Q Consensus       221 i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p  295 (316)
                      ++.+|+.+.+|..+.... .|   ...+.+.++..+.+++++|+........--++|.|+  .. ...|.++...+
T Consensus       243 ~~~ldl~~~~W~~~~~~g~~p---~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~--~~-~~~w~~~~~~~  312 (482)
T KOG0379|consen  243 VHILDLSTWEWKLLPTGGDLP---SPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLD--LE-TLVWSKVESVG  312 (482)
T ss_pred             eEeeecccceeeeccccCCCC---CCcceeeeEEECCEEEEEcCCccccccccccccccc--cc-ccceeeeeccc
Confidence            899999999998554322 12   234555666889999999987664221225668887  33 23498776655

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=99.62  E-value=1.7e-14  Score=115.14  Aligned_cols=191  Identities=15%  Similarity=0.191  Sum_probs=132.4

Q ss_pred             EEEEecCCCCCCCCCCceEEeeCCCCceeEccCCC-CCCccce-eeeecCCEEEEEcC--------CceeeeecCCCCce
Q 040781           66 LLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQ-PSSFDFL-LRSSHSTLLYTLSP--------SKLSFSFDPLHLAW  135 (316)
Q Consensus        66 l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~-~~~~~~~-~~~s~~~~l~~~gg--------~~~~~v~np~t~~w  135 (316)
                      .++.+.++- .....+.+++|||..++|.+..... .++..+. ..+.-|+.+|++||        +.+++++|..|-+|
T Consensus        91 ~yvWGGRND-~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtW  169 (392)
T KOG4693|consen   91 AYVWGGRND-DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTW  169 (392)
T ss_pred             EEEEcCccC-cccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceee
Confidence            344455441 1223455788999999998653201 1222222 33445788999998        37899999999999


Q ss_pred             eecC---CCCCCCCCCEEEEECCEEEEEcCcCCCC--------CCCcEEEEEeCCCCCeeecCC---CCcccccCccccc
Q 040781          136 HHVD---APRVWRTDPVVALVGDKVVVAGGACDFE--------DDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTW  201 (316)
Q Consensus       136 ~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~--------~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~  201 (316)
                      +.+-   .++..|..++..+++...|++||..+..        .++..+..+|.+|+.|.+...   .|.  .+..+   
T Consensus       170 r~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~--GRRSH---  244 (392)
T KOG4693|consen  170 REMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPG--GRRSH---  244 (392)
T ss_pred             eehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCC--ccccc---
Confidence            9875   5677888888888999999999875421        466788899999999998733   233  44445   


Q ss_pred             eeEEEeCCEEEEEecc-------cceEEEeeCCCCCccCCCc-CCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781          202 LSVAVNSRQLYVTEKY-------SGITVSFDPSTKGWSGPFH-LRQFDHEKKVFYSVITFANDRLIAVGLTGE  266 (316)
Q Consensus       202 ~~~~~~~~~~y~~~~~-------~~~i~~yD~~~~~W~~~~~-l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~  266 (316)
                       +..+-++.+|++||+       .+.++.|||.+..|+.+.. -..|  ..+...|. +..+++++++||+..
T Consensus       245 -S~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P--~aRRRqC~-~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  245 -STFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYP--SARRRQCS-VVSGGKVYLFGGTSP  313 (392)
T ss_pred             -ceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCC--CcccceeE-EEECCEEEEecCCCC
Confidence             556689999999993       3578999999999998762 1122  01222233 346999999999753

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.53  E-value=1.2e-12  Score=112.61  Aligned_cols=267  Identities=11%  Similarity=0.087  Sum_probs=139.1

Q ss_pred             CCCCCCCcHHHHHHHHhcCC-hhhhHHHhhhhHHHHHHhhcccccc-CCCCCeEEEEecCCCCCCCCCCceEEeeCCC--
Q 040781           15 NTNNSIVHGDILEAILSQVP-LIDLASACYVSRSWNRAVFSSLRRV-NKIKPWLLLHTQSQRTMAPYLTTAHAYDARS--   90 (316)
Q Consensus        15 ~~~~~~Lp~dll~~IL~rLp-~~~l~r~r~VcK~W~~li~s~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~--   90 (316)
                      |++|++||+|||..|..||| ..|++|||+|||+||+.+....... ...+||+++..-.. ..+  .   ...|+..  
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~---~~~~~~~~~   74 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINP-SET--L---TDDRSYISR   74 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccC-CCC--c---ccccccccc
Confidence            57899999999999999996 6899999999999999987532111 11225655421000 010  0   0111100  


Q ss_pred             -C------ceeEccCCCCCCccceeeeecCCEEEEEcCC---ceeeeecCCCCceeecCCCCC----CC---CCCEEEE-
Q 040781           91 -H------VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS---KLSFSFDPLHLAWHHVDAPRV----WR---TDPVVAL-  152 (316)
Q Consensus        91 -~------~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~----~~---~~~~~~~-  152 (316)
                       +      ...++   +      ...++..|+|...+..   +.+.+.||.++.-...++...    .+   ...+..+ 
T Consensus        75 ~~~~ls~~~~~r~---~------~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~l~  145 (373)
T PLN03215         75 PGAFLSRAAFFRV---T------LSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQVL  145 (373)
T ss_pred             ccceeeeeEEEEe---e------cCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccceeeeeEEEEccceEEEE
Confidence             0      11111   1      0111223665555432   678888888887444432110    00   0000000 


Q ss_pred             ---------ECC-EEEEEcCcCCCCC-CCcEEEEEeC------CCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781          153 ---------VGD-KVVVAGGACDFED-DPLAVEMYSV------DTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE  215 (316)
Q Consensus       153 ---------~~~-~v~~~gg~~~~~~-~~~~v~vy~~------~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~  215 (316)
                               .++ ++.++. .....+ ....+.++..      ..++|+.+.....    ...    .+++.+|.+|+++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~~~----~~~----DIi~~kGkfYAvD  216 (373)
T PLN03215        146 DWAKRRETRPGYQRSALVK-VKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQMGY----HFS----DIIVHKGQTYALD  216 (373)
T ss_pred             ecccccccccceeEEEEEE-eecCCCcceEEEEEeecCcEeeecCCeeeEccCCCc----eee----EEEEECCEEEEEc
Confidence                     001 011111 000000 0011111111      1367888753211    122    7888999999996


Q ss_pred             cccceEEEeeCCCCCccCCCcCCC--CCcccceeeeeeEeeCCEEEEEecCCCC------------CCcceeeEEEeecc
Q 040781          216 KYSGITVSFDPSTKGWSGPFHLRQ--FDHEKKVFYSVITFANDRLIAVGLTGEA------------EDVKSLKIWQVNIK  281 (316)
Q Consensus       216 ~~~~~i~~yD~~~~~W~~~~~l~~--~~~~~~~~~~~l~~~~g~L~v~g~~~~~------------~~~~~~~iw~l~~~  281 (316)
                      . .+.++++|.+-+. .++.....  +..........+++++|+|++|......            .....++||++|  
T Consensus       217 ~-~G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD--  292 (373)
T PLN03215        217 S-IGIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD--  292 (373)
T ss_pred             C-CCeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc--
Confidence            4 3677888854221 22221111  0000111235688999999999864211            123469999999  


Q ss_pred             CCchhhhhhcCCCcHHHHHHHhcCCcceeee
Q 040781          282 GGSLEELKEIGEMPKALLEKLKGNKRSAVEV  312 (316)
Q Consensus       282 ~~~~~~W~~i~~~p~~~~~~~~~~~~~~~~~  312 (316)
                      ... .+|+++..+.+..+  |.|.+++....
T Consensus       293 ~~~-~~WveV~sLgd~aL--FlG~~~s~sv~  320 (373)
T PLN03215        293 DEL-AKWMEVKTLGDNAF--VMATDTCFSVL  320 (373)
T ss_pred             CCC-CcEEEecccCCeEE--EEECCccEEEe
Confidence            544 34999999988855  77766655443

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.45  E-value=4.4e-12  Score=115.33  Aligned_cols=167  Identities=18%  Similarity=0.193  Sum_probs=126.2

Q ss_pred             cCCEEEEEcCC------c--eeeeecCCCCceeecC---CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781          112 HSTLLYTLSPS------K--LSFSFDPLHLAWHHVD---APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT  180 (316)
Q Consensus       112 ~~~~l~~~gg~------~--~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t  180 (316)
                      .++.+|++||.      .  +++++|..+..|....   ..|.++..+.++..+.++|++||..........++.||..|
T Consensus        69 ~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t  148 (482)
T KOG0379|consen   69 IGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLST  148 (482)
T ss_pred             ECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCC
Confidence            47899999873      3  4999999999998764   34578888888899999999999876544677899999999


Q ss_pred             CCeeecCC---CCcccccCccccceeEEEeCCEEEEEec------ccceEEEeeCCCCCccCCCcCC-CCCcccceeeee
Q 040781          181 RTWEICQS---MPAVLKDSAASTWLSVAVNSRQLYVTEK------YSGITVSFDPSTKGWSGPFHLR-QFDHEKKVFYSV  250 (316)
Q Consensus       181 ~~W~~~~~---~p~~~~~~~~~~~~~~~~~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~l~-~~~~~~~~~~~~  250 (316)
                      ++|+....   .|.  ++..+    ++++.+.++|++||      ..+.+++||+++.+|.++.... .|   .....+.
T Consensus       149 ~~W~~l~~~~~~P~--~r~~H----s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P---~pR~gH~  219 (482)
T KOG0379|consen  149 RTWSLLSPTGDPPP--PRAGH----SATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAP---SPRYGHA  219 (482)
T ss_pred             CcEEEecCcCCCCC--Ccccc----eEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCC---CCCCCce
Confidence            99999843   344  67777    88899999999998      2467999999999999887532 23   2345567


Q ss_pred             eEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhc
Q 040781          251 ITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEI  291 (316)
Q Consensus       251 l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i  291 (316)
                      ++..++++++++|.... ...--++|.||  -.+ .+|.++
T Consensus       220 ~~~~~~~~~v~gG~~~~-~~~l~D~~~ld--l~~-~~W~~~  256 (482)
T KOG0379|consen  220 MVVVGNKLLVFGGGDDG-DVYLNDVHILD--LST-WEWKLL  256 (482)
T ss_pred             EEEECCeEEEEeccccC-CceecceEeee--ccc-ceeeec
Confidence            78889999999875521 12224567777  434 338744

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.35  E-value=3.5e-11  Score=101.91  Aligned_cols=163  Identities=15%  Similarity=0.175  Sum_probs=111.6

Q ss_pred             ceeeeecCCCCceeec--CCCCCCCCCCEEEEE-CCEEEEEcCcCCCC-----CCCcEEEEEeCCCCCeeecCC--CCcc
Q 040781          123 KLSFSFDPLHLAWHHV--DAPRVWRTDPVVALV-GDKVVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQS--MPAV  192 (316)
Q Consensus       123 ~~~~v~np~t~~w~~l--p~~~~~~~~~~~~~~-~~~v~~~gg~~~~~-----~~~~~v~vy~~~t~~W~~~~~--~p~~  192 (316)
                      +++|+||..+++|+.+  |..|.+|..+.++++ ...++++||.....     .....+++||..+++|..+..  -|. 
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS-  176 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS-  176 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC-
Confidence            7899999999999987  566777877766555 37899999853211     234568999999999999953  445 


Q ss_pred             cccCccccceeEEEeCCEEEEEec---------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEe
Q 040781          193 LKDSAASTWLSVAVNSRQLYVTEK---------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVG  262 (316)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~y~~~~---------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g  262 (316)
                       +++++    -.++-...+.++||         +.|.+++||+++-+|+.+.. +..-. ...+.|.+ +.-.|.++|.|
T Consensus       177 -~RSGH----RMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep-sga~P-tpRSGcq~~vtpqg~i~vyG  249 (521)
T KOG1230|consen  177 -PRSGH----RMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP-SGAGP-TPRSGCQFSVTPQGGIVVYG  249 (521)
T ss_pred             -CCccc----eeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC-CCCCC-CCCCcceEEecCCCcEEEEc
Confidence             77776    45556788888888         34689999999999998874 32101 22333444 44489999999


Q ss_pred             cCCCCC-------CcceeeEEEeeccCC--chhhhhhcCC
Q 040781          263 LTGEAE-------DVKSLKIWQVNIKGG--SLEELKEIGE  293 (316)
Q Consensus       263 ~~~~~~-------~~~~~~iw~l~~~~~--~~~~W~~i~~  293 (316)
                      |+....       ....-++|.|+-+++  ...+|+++.+
T Consensus       250 GYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp  289 (521)
T KOG1230|consen  250 GYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKP  289 (521)
T ss_pred             chhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence            875321       223367899983221  1233666644

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.32  E-value=1.1e-10  Score=99.08  Aligned_cols=176  Identities=15%  Similarity=0.213  Sum_probs=123.4

Q ss_pred             CceEEeeCCCCceeEccCCCC--CCccc-eeeeecCCEEEEEcC------------CceeeeecCCCCceeecC--CCCC
Q 040781           81 TTAHAYDARSHVWIEIKNNQP--SSFDF-LLRSSHSTLLYTLSP------------SKLSFSFDPLHLAWHHVD--APRV  143 (316)
Q Consensus        81 ~~~~~~d~~~~~w~~~~~~~~--~~~~~-~~~~s~~~~l~~~gg------------~~~~~v~np~t~~w~~lp--~~~~  143 (316)
                      +.++.||...++|..+.. |.  +|+.. ..++...|.++++||            .+++++++..|++|.+|.  ..|.
T Consensus        98 ndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS  176 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS  176 (521)
T ss_pred             eeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence            557789999999998743 32  22322 233333479999998            178999999999999875  5778


Q ss_pred             CCCCCEEEEECCEEEEEcCcCCCC---CCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEe-CCEEEEEec
Q 040781          144 WRTDPVVALVGDKVVVAGGACDFE---DDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVN-SRQLYVTEK  216 (316)
Q Consensus       144 ~~~~~~~~~~~~~v~~~gg~~~~~---~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~-~~~~y~~~~  216 (316)
                      +|..|.+++...+++++||+.+..   .+...+++||..|=+|..+.+   .|.  ++++.    ...+. .|.||+.||
T Consensus       177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~Pt--pRSGc----q~~vtpqg~i~vyGG  250 (521)
T KOG1230|consen  177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPT--PRSGC----QFSVTPQGGIVVYGG  250 (521)
T ss_pred             CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCC--CCCcc----eEEecCCCcEEEEcc
Confidence            899999999999999999985432   466789999999999999954   233  55544    33444 789999998


Q ss_pred             c--------------cceEEEeeCCC-----CCccCCCc--CCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781          217 Y--------------SGITVSFDPST-----KGWSGPFH--LRQFDHEKKVFYSVITFANDRLIAVGLTGE  266 (316)
Q Consensus       217 ~--------------~~~i~~yD~~~-----~~W~~~~~--l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~  266 (316)
                      +              ...++.+++++     =.|..+..  ++|-   .+..+...+.-+++-+++||.-+
T Consensus       251 YsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPs---pRsgfsv~va~n~kal~FGGV~D  318 (521)
T KOG1230|consen  251 YSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPS---PRSGFSVAVAKNHKALFFGGVCD  318 (521)
T ss_pred             hhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCC---CCCceeEEEecCCceEEecceec
Confidence            2              23567888877     34666554  3332   23334444556777777776433

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.17  E-value=8.8e-10  Score=92.16  Aligned_cols=199  Identities=16%  Similarity=0.208  Sum_probs=129.1

Q ss_pred             CCceeEccCCCCCCccceeeeecCCEEEEEcCC-----------ceeeeecCCCCceeecCCC-CCCCCCCEEEEECC-E
Q 040781           90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-----------KLSFSFDPLHLAWHHVDAP-RVWRTDPVVALVGD-K  156 (316)
Q Consensus        90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-----------~~~~v~np~t~~w~~lp~~-~~~~~~~~~~~~~~-~  156 (316)
                      ...|..+...|..++.....+..++.||+.||.           ++.|.|||.+++|.++... |.--..+..+.++. +
T Consensus        69 ~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~  148 (381)
T COG3055          69 GKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTK  148 (381)
T ss_pred             CCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCce
Confidence            458998853233333334445567999998862           6889999999999999632 22222333444555 9


Q ss_pred             EEEEcCcCCCC---------------------------------CCCcEEEEEeCCCCCeeecCCCCcccccCcccccee
Q 040781          157 VVVAGGACDFE---------------------------------DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLS  203 (316)
Q Consensus       157 v~~~gg~~~~~---------------------------------~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~  203 (316)
                      |+++||+....                                 .....+.+|++.++.|+.....|. .+.+.+    +
T Consensus       149 i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf-~~~aGs----a  223 (381)
T COG3055         149 IYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF-YGNAGS----A  223 (381)
T ss_pred             EEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc-cCccCc----c
Confidence            99999984110                                 133467899999999999976665 355555    5


Q ss_pred             EEEeCCEEEEEec------ccceEEEeeC--CCCCccCCCcCCCCCcc--cceeeeeeEeeCCEEEEEecCCCCC-----
Q 040781          204 VAVNSRQLYVTEK------YSGITVSFDP--STKGWSGPFHLRQFDHE--KKVFYSVITFANDRLIAVGLTGEAE-----  268 (316)
Q Consensus       204 ~~~~~~~~y~~~~------~~~~i~~yD~--~~~~W~~~~~l~~~~~~--~~~~~~~l~~~~g~L~v~g~~~~~~-----  268 (316)
                      ++.-++.+.++.|      ++..+..+|+  ...+|..+..+|+|...  ..+..+.-...+|.+.+.|+.....     
T Consensus       224 ~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y  303 (381)
T COG3055         224 VVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAY  303 (381)
T ss_pred             eeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHH
Confidence            5556777777766      2333445554  56789999988887221  2333333446688888988864321     


Q ss_pred             ------------CcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781          269 ------------DVKSLKIWQVNIKGGSLEELKEIGEMPKAL  298 (316)
Q Consensus       269 ------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~  298 (316)
                                  ....-+||.++  +..   |+.++.||..+
T Consensus       304 ~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~---Wk~~GeLp~~l  340 (381)
T COG3055         304 KNGKFYAHEGLSKSWNSEVYIFD--NGS---WKIVGELPQGL  340 (381)
T ss_pred             HhcccccccchhhhhhceEEEEc--CCc---eeeecccCCCc
Confidence                        12235778888  533   99999999754

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.05  E-value=2.1e-09  Score=93.72  Aligned_cols=210  Identities=14%  Similarity=0.183  Sum_probs=129.7

Q ss_pred             CCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCC-CCCCcc-ceeeeecCCEEEEEcCC-------ceeeeecCCCC
Q 040781           63 KPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNN-QPSSFD-FLLRSSHSTLLYTLSPS-------KLSFSFDPLHL  133 (316)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~-~~~~~~-~~~~~s~~~~l~~~gg~-------~~~~v~np~t~  133 (316)
                      .-.+++|+..+  +. -...++.||...++|.....- ..++.. -+-..+.|..||++||-       +++|-.....-
T Consensus        42 kELiviFGGGN--EG-iiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRW  118 (830)
T KOG4152|consen   42 KELIVIFGGGN--EG-IIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRW  118 (830)
T ss_pred             eeeEEEecCCc--cc-chhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhh
Confidence            34556676655  21 233478899999999743110 111111 11223456888999883       45555545555


Q ss_pred             ceeecC-------CCCCCCCCCEEEEECCEEEEEcCcCCCC--------CCCcEEEEEeCCCC----Ceeec---CCCCc
Q 040781          134 AWHHVD-------APRVWRTDPVVALVGDKVVVAGGACDFE--------DDPLAVEMYSVDTR----TWEIC---QSMPA  191 (316)
Q Consensus       134 ~w~~lp-------~~~~~~~~~~~~~~~~~v~~~gg~~~~~--------~~~~~v~vy~~~t~----~W~~~---~~~p~  191 (316)
                      +|+++.       ++|.+|..|.+.+++.|.|++||..+..        .++..+.+.+...+    .|...   ..+|.
T Consensus       119 eWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~  198 (830)
T KOG4152|consen  119 EWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPP  198 (830)
T ss_pred             hHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCC
Confidence            788873       5778899999999999999999974332        34566667666644    48876   23555


Q ss_pred             ccccCccccceeEEEe-----CCEEEEEec----ccceEEEeeCCCCCccCCCc---CCCCCcccceeeeeeEeeCCEEE
Q 040781          192 VLKDSAASTWLSVAVN-----SRQLYVTEK----YSGITVSFDPSTKGWSGPFH---LRQFDHEKKVFYSVITFANDRLI  259 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-----~~~~y~~~~----~~~~i~~yD~~~~~W~~~~~---l~~~~~~~~~~~~~l~~~~g~L~  259 (316)
                        ++..+.   ++...     ..++|++||    +.++++-+|+++-+|.+...   .|.|     .+-+.....++++|
T Consensus       199 --pRESHT---AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlP-----RSLHsa~~IGnKMy  268 (830)
T KOG4152|consen  199 --PRESHT---AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLDTLTWNKPSLSGVAPLP-----RSLHSATTIGNKMY  268 (830)
T ss_pred             --Ccccce---eEEEEeccCCcceEEEEcccccccccceeEEecceeecccccccCCCCCC-----cccccceeecceeE
Confidence              444331   22221     246899988    45688999999999987652   1223     22234445689999


Q ss_pred             EEecCC----CC--------C--CcceeeEEEeeccCCchhhhhh
Q 040781          260 AVGLTG----EA--------E--DVKSLKIWQVNIKGGSLEELKE  290 (316)
Q Consensus       260 v~g~~~----~~--------~--~~~~~~iw~l~~~~~~~~~W~~  290 (316)
                      ++||--    +.        +  ....+..|.+|  +..   |+.
T Consensus       269 vfGGWVPl~~~~~~~~~hekEWkCTssl~clNld--t~~---W~t  308 (830)
T KOG4152|consen  269 VFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLD--TMA---WET  308 (830)
T ss_pred             Eecceeeeeccccccccccceeeeccceeeeeec--chh---eee
Confidence            999732    11        0  22457888888  533   853

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.02  E-value=3.1e-10  Score=68.56  Aligned_cols=38  Identities=29%  Similarity=0.354  Sum_probs=33.9

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      |..||+|++.+||++||..|+.++..|||+|++++.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~   38 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN   38 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh
Confidence            57899999999999999999999999999999999765

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.91  E-value=1.4e-08  Score=88.65  Aligned_cols=170  Identities=12%  Similarity=0.244  Sum_probs=103.5

Q ss_pred             CEEEEEcCC-----ceeeeecCCCCceeecC---CCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC--CCe
Q 040781          114 TLLYTLSPS-----KLSFSFDPLHLAWHHVD---APRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT--RTW  183 (316)
Q Consensus       114 ~~l~~~gg~-----~~~~v~np~t~~w~~lp---~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t--~~W  183 (316)
                      .++.++||.     +.+++||.+|++|..-.   ..|.....+++...+.+|+++||...++.+..  +.|....  ..|
T Consensus        43 ELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsN--dLYELQasRWeW  120 (830)
T KOG4152|consen   43 ELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSN--DLYELQASRWEW  120 (830)
T ss_pred             eeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccc--hHHHhhhhhhhH
Confidence            677777752     68999999999997421   34445555666667899999999876654443  3455444  467


Q ss_pred             eecCC-CC----cccccCccccceeEEEeCCEEEEEec--------------ccceEEEeeCCCC----CccCC---CcC
Q 040781          184 EICQS-MP----AVLKDSAASTWLSVAVNSRQLYVTEK--------------YSGITVSFDPSTK----GWSGP---FHL  237 (316)
Q Consensus       184 ~~~~~-~p----~~~~~~~~~~~~~~~~~~~~~y~~~~--------------~~~~i~~yD~~~~----~W~~~---~~l  237 (316)
                      +++.+ .|    .+.++-.+    +..+.+++-|++||              +.++++..++.-+    .|...   ..+
T Consensus       121 krlkp~~p~nG~pPCPRlGH----SFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~  196 (830)
T KOG4152|consen  121 KRLKPKTPKNGPPPCPRLGH----SFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVL  196 (830)
T ss_pred             hhcCCCCCCCCCCCCCccCc----eeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCC
Confidence            77733 11    11255556    67788999999998              2234455555433    25432   214


Q ss_pred             CCCCcccceeeeeeEe-----eCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh-----cCCCcHHHH
Q 040781          238 RQFDHEKKVFYSVITF-----ANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE-----IGEMPKALL  299 (316)
Q Consensus       238 ~~~~~~~~~~~~~l~~-----~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~-----i~~~p~~~~  299 (316)
                      |+|    +-++.+++.     ...+++++||-..   ++--++|.||  -+++. |.+     +.+||+.|.
T Consensus       197 P~p----RESHTAViY~eKDs~~skmvvyGGM~G---~RLgDLW~Ld--l~Tl~-W~kp~~~G~~PlPRSLH  258 (830)
T KOG4152|consen  197 PPP----RESHTAVIYTEKDSKKSKMVVYGGMSG---CRLGDLWTLD--LDTLT-WNKPSLSGVAPLPRSLH  258 (830)
T ss_pred             CCC----cccceeEEEEeccCCcceEEEEccccc---ccccceeEEe--cceee-cccccccCCCCCCcccc
Confidence            444    222233332     1347888886432   2335789999  55555 865     456887664

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.89  E-value=5.5e-08  Score=81.61  Aligned_cols=176  Identities=18%  Similarity=0.290  Sum_probs=114.5

Q ss_pred             ecCCEEEE-EcC-CceeeeecCC--CCceeecCC-CCCCCCCCEEEEECCEEEEEcCcCCCC----CCCcEEEEEeCCCC
Q 040781          111 SHSTLLYT-LSP-SKLSFSFDPL--HLAWHHVDA-PRVWRTDPVVALVGDKVVVAGGACDFE----DDPLAVEMYSVDTR  181 (316)
Q Consensus       111 s~~~~l~~-~gg-~~~~~v~np~--t~~w~~lp~-~~~~~~~~~~~~~~~~v~~~gg~~~~~----~~~~~v~vy~~~t~  181 (316)
                      -.|..+|+ .|. -...|+.|..  .+.|+++.. +..+|.....++.+.++|++||.....    .....+..||+.+|
T Consensus        44 ~ig~~~YVGLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~n  123 (381)
T COG3055          44 LIGDTVYVGLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTN  123 (381)
T ss_pred             eecceEEEEeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCC
Confidence            34566776 441 2567777654  468999875 445666667777899999999874432    24467889999999


Q ss_pred             CeeecCC-CCcccccCccccceeEEEeCC-EEEEEec---------------------------------------ccce
Q 040781          182 TWEICQS-MPAVLKDSAASTWLSVAVNSR-QLYVTEK---------------------------------------YSGI  220 (316)
Q Consensus       182 ~W~~~~~-~p~~~~~~~~~~~~~~~~~~~-~~y~~~~---------------------------------------~~~~  220 (316)
                      +|..++. .|.  ....+    .++..++ .+|++||                                       ....
T Consensus       124 sW~kl~t~sP~--gl~G~----~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~e  197 (381)
T COG3055         124 SWHKLDTRSPT--GLVGA----STFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKE  197 (381)
T ss_pred             hhheecccccc--ccccc----eeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhccccc
Confidence            9999954 455  33333    3444444 8999887                                       1346


Q ss_pred             EEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781          221 TVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKAL  298 (316)
Q Consensus       221 i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~~  298 (316)
                      +++||+.+++|+.....|.-    .....+.+..+++|.++.|...+. .+.-++++.++.....+ |..+..+|...
T Consensus       198 v~sy~p~~n~W~~~G~~pf~----~~aGsa~~~~~n~~~lInGEiKpG-LRt~~~k~~~~~~~~~~-w~~l~~lp~~~  269 (381)
T COG3055         198 VLSYDPSTNQWRNLGENPFY----GNAGSAVVIKGNKLTLINGEIKPG-LRTAEVKQADFGGDNLK-WLKLSDLPAPI  269 (381)
T ss_pred             ccccccccchhhhcCcCccc----CccCcceeecCCeEEEEcceecCC-ccccceeEEEeccCcee-eeeccCCCCCC
Confidence            89999999999998866653    122234556678899998754432 12233344442254444 99887766543

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.77  E-value=1.9e-09  Score=65.47  Aligned_cols=39  Identities=33%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           17 NNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        17 ~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ++..||+|++.+||.+|+..++++++.|||+|++++.+.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            356799999999999999999999999999999999875

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PF13964 Kelch_6: Kelch motif

Probab=98.75  E-value=4.6e-08  Score=59.84  Aligned_cols=48  Identities=33%  Similarity=0.434  Sum_probs=41.6

Q ss_pred             CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +|..++++.++++||++||..........+++||++|++|+.+++||.
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            466778888999999999987744477889999999999999998876

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.75  E-value=1.1e-08  Score=59.75  Aligned_cols=35  Identities=40%  Similarity=0.547  Sum_probs=33.4

Q ss_pred             CcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           21 VHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        21 Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ||+|++.+||.+|+..++.++++|||+|+.++.++
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~   35 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH   35 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh
Confidence            79999999999999999999999999999999765

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=98.54  E-value=2.1e-07  Score=69.53  Aligned_cols=93  Identities=16%  Similarity=0.188  Sum_probs=62.0

Q ss_pred             eEEEeCCEEEEEec---ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          203 SVAVNSRQLYVTEK---YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       203 ~~~~~~~~~y~~~~---~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      |++++|..+|....   ....|++||+++|+|+.+. +|.. .........|++.+|+|+++....... ...++||.|+
T Consensus         1 gicinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~-~P~~-~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe   77 (129)
T PF08268_consen    1 GICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIK-LPED-PYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE   77 (129)
T ss_pred             CEEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEE-eeee-eccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence            34555555555543   3468999999999998777 6511 112334567889999999997544322 3569999999


Q ss_pred             ccCCchhhhhhcCC-CcHHHHH
Q 040781          280 IKGGSLEELKEIGE-MPKALLE  300 (316)
Q Consensus       280 ~~~~~~~~W~~i~~-~p~~~~~  300 (316)
                        +...++|.+... +|.....
T Consensus        78 --D~~k~~Wsk~~~~lp~~~~~   97 (129)
T PF08268_consen   78 --DYEKQEWSKKHIVLPPSWQH   97 (129)
T ss_pred             --ccccceEEEEEEECChHHhc
Confidence              776667986644 5555443

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.51  E-value=1e-07  Score=57.47  Aligned_cols=47  Identities=34%  Similarity=0.534  Sum_probs=40.0

Q ss_pred             CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +|..++++.++.+||++||..........+++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            46677888999999999998775557889999999999999988765

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=98.32  E-value=2.7e-06  Score=51.65  Aligned_cols=47  Identities=19%  Similarity=0.237  Sum_probs=38.6

Q ss_pred             CCCCCEEEEECCEEEEEcCc--CCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          144 WRTDPVVALVGDKVVVAGGA--CDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       144 ~~~~~~~~~~~~~v~~~gg~--~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +|..++.++.+.+||++||.  .........+++||+++++|+.+.++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            46677888899999999998  333356788999999999999987663

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13964 Kelch_6: Kelch motif

Probab=98.29  E-value=2e-06  Score=52.54  Aligned_cols=38  Identities=13%  Similarity=0.153  Sum_probs=32.4

Q ss_pred             eeeecCCEEEEEcCC-------ceeeeecCCCCceeecCCCCCCC
Q 040781          108 LRSSHSTLLYTLSPS-------KLSFSFDPLHLAWHHVDAPRVWR  145 (316)
Q Consensus       108 ~~~s~~~~l~~~gg~-------~~~~v~np~t~~w~~lp~~~~~~  145 (316)
                      ..+..++.||++||.       +++++|||.|++|.++++|+.+|
T Consensus         6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence            345577899999983       67999999999999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=98.19  E-value=0.00014  Score=61.17  Aligned_cols=38  Identities=24%  Similarity=0.406  Sum_probs=35.6

Q ss_pred             CCCCc----HHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVH----GDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp----~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      +..||    +++.+.||+.|...+|..+..|||+|+.+++.+
T Consensus        75 i~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg  116 (499)
T KOG0281|consen   75 ITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG  116 (499)
T ss_pred             HHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence            34688    999999999999999999999999999999987

>smart00612 Kelch Kelch domain

Probab=98.08  E-value=9.8e-06  Score=48.51  Aligned_cols=46  Identities=35%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNS  208 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~  208 (316)
                      +||++||.... .....+++||+.+++|+.++++|.  .+..+    ++++.+
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~--~r~~~----~~~~~~   46 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPT--PRSGH----GVAVIN   46 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCC--ccccc----eEEEeC
Confidence            48999987542 356789999999999999999887  66655    555544

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.07  E-value=4.9e-06  Score=50.52  Aligned_cols=47  Identities=21%  Similarity=0.312  Sum_probs=29.3

Q ss_pred             CCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          144 WRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       144 ~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +|..++.+.. +.++|++||..........+++||..+++|+++.++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            4667777777 5899999998765446778999999999999997765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=4.1e-06  Score=69.31  Aligned_cols=49  Identities=18%  Similarity=0.182  Sum_probs=42.4

Q ss_pred             CCCCCCCCCCCCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781            5 AAAPEGDSGSNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus         5 ~~~~~~~~~~~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ++.++..++.  .|.+||||+++.||+.|+.++|++...|||+|+.+.++.
T Consensus        87 ~~~~~~npgv--~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de  135 (419)
T KOG2120|consen   87 KLNRENNPGV--SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE  135 (419)
T ss_pred             chhcccCCCC--CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence            3444555554  399999999999999999999999999999999999876

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.99  E-value=0.00025  Score=62.09  Aligned_cols=129  Identities=19%  Similarity=0.157  Sum_probs=84.4

Q ss_pred             cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCC----CcEEEEE--e--------
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDD----PLAVEMY--S--------  177 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~----~~~v~vy--~--------  177 (316)
                      ++..|++++......+||+.|..-..+|.+..+...+....+++++|++.........    ...+|++  +        
T Consensus        75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~  154 (342)
T PF07893_consen   75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSP  154 (342)
T ss_pred             cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccC
Confidence            5778888877778999999999999999888888777777789999999854322111    0145544  4        


Q ss_pred             CCCCCeeecCCCCcccccCc-cccceeEEEe-CCEEEE-EecccceEEEeeCCCCCccCCCc--CCCC
Q 040781          178 VDTRTWEICQSMPAVLKDSA-ASTWLSVAVN-SRQLYV-TEKYSGITVSFDPSTKGWSGPFH--LRQF  240 (316)
Q Consensus       178 ~~t~~W~~~~~~p~~~~~~~-~~~~~~~~~~-~~~~y~-~~~~~~~i~~yD~~~~~W~~~~~--l~~~  240 (316)
                      ..+.+|+.+++.|....... .....+.+++ |..||+ +.+.....++||..+.+|+.+..  ||..
T Consensus       155 ~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LPF~  222 (342)
T PF07893_consen  155 EESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLPFH  222 (342)
T ss_pred             CCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecCcC
Confidence            23346787765443111110 0002356666 777888 33321235999999999999876  5553

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.96  E-value=8.3e-06  Score=48.97  Aligned_cols=36  Identities=22%  Similarity=0.458  Sum_probs=31.1

Q ss_pred             eEEEeCCEEEEEecc------cceEEEeeCCCCCccCCCcCC
Q 040781          203 SVAVNSRQLYVTEKY------SGITVSFDPSTKGWSGPFHLR  238 (316)
Q Consensus       203 ~~~~~~~~~y~~~~~------~~~i~~yD~~~~~W~~~~~l~  238 (316)
                      ++++.++.+|++||.      .+.+..||+.+++|+.++.||
T Consensus         6 ~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    6 AAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             EEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             EEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            788999999999993      347899999999999887654

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.82  E-value=7.2e-05  Score=45.27  Aligned_cols=43  Identities=30%  Similarity=0.422  Sum_probs=34.8

Q ss_pred             CCEEEEEcCcCC-CCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781          154 GDKVVVAGGACD-FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA  198 (316)
Q Consensus       154 ~~~v~~~gg~~~-~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~  198 (316)
                      ++++|++||... .......+.+||+.+++|+++..+|.  ++..+
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h   44 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGH   44 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--Cccce
Confidence            468999999872 33467889999999999999987877  77665

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=97.81  E-value=5.4e-05  Score=45.84  Aligned_cols=40  Identities=15%  Similarity=0.216  Sum_probs=33.8

Q ss_pred             CCEEEEEcCC--------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781          113 STLLYTLSPS--------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL  152 (316)
Q Consensus       113 ~~~l~~~gg~--------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  152 (316)
                      |+.+|++||.        +++++||+.+++|++++.+|.+|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            3567888873        689999999999999999999998887754

>smart00612 Kelch Kelch domain

Probab=97.76  E-value=7.3e-05  Score=44.60  Aligned_cols=39  Identities=21%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             EEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEEC
Q 040781          116 LYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVG  154 (316)
Q Consensus       116 l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~  154 (316)
                      ||++||.      +++++|||.+++|..+++++.+|..++.+.++
T Consensus         2 iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~   46 (47)
T smart00612        2 IYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN   46 (47)
T ss_pred             EEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence            6788763      57899999999999999999999888776654

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=97.70  E-value=0.00012  Score=57.00  Aligned_cols=86  Identities=17%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             EEEeCCEEEEEecccc----eEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecCCCCCCcceeeEEEe
Q 040781          204 VAVNSRQLYVTEKYSG----ITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLTGEAEDVKSLKIWQV  278 (316)
Q Consensus       204 ~~~~~~~~y~~~~~~~----~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~~~~~~~~~~~iw~l  278 (316)
                      +.++|..+|+......    .|++||+++++|+....+|.... .......| +..+++|+++.....   ...++||.|
T Consensus         2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~-~~~~~~~L~~v~~~~L~~~~~~~~---~~~~~IWvm   77 (164)
T PF07734_consen    2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCND-DDDDSVSLSVVRGDCLCVLYQCDE---TSKIEIWVM   77 (164)
T ss_pred             EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccC-ccCCEEEEEEecCCEEEEEEeccC---CccEEEEEE
Confidence            3444444444443222    69999999999843332554411 11223445 344789999964221   234999999


Q ss_pred             eccCCc--hhhhhhcCCCc
Q 040781          279 NIKGGS--LEELKEIGEMP  295 (316)
Q Consensus       279 ~~~~~~--~~~W~~i~~~p  295 (316)
                      +  +.+  .+.|+++-.++
T Consensus        78 ~--~~~~~~~SWtK~~~i~   94 (164)
T PF07734_consen   78 K--KYGYGKESWTKLFTID   94 (164)
T ss_pred             e--eeccCcceEEEEEEEe
Confidence            9  532  33498776544

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.62  E-value=0.00015  Score=43.91  Aligned_cols=35  Identities=29%  Similarity=0.406  Sum_probs=30.0

Q ss_pred             eEEEeCCEEEEEecc--------cceEEEeeCCCCCccCCCcC
Q 040781          203 SVAVNSRQLYVTEKY--------SGITVSFDPSTKGWSGPFHL  237 (316)
Q Consensus       203 ~~~~~~~~~y~~~~~--------~~~i~~yD~~~~~W~~~~~l  237 (316)
                      ++++.++++|++||.        .+.+.+||+++++|+++..+
T Consensus         6 s~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~   48 (49)
T PF07646_consen    6 SAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPM   48 (49)
T ss_pred             EEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCC
Confidence            678889999999996        24689999999999988744

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=97.54  E-value=0.00018  Score=63.50  Aligned_cols=130  Identities=19%  Similarity=0.243  Sum_probs=82.7

Q ss_pred             cCCCCceeecCCCC----------CCCCCCEEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCccc
Q 040781          129 DPLHLAWHHVDAPR----------VWRTDPVVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVL  193 (316)
Q Consensus       129 np~t~~w~~lp~~~----------~~~~~~~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~  193 (316)
                      -|.+-.|.++++-.          ..|..|.++...  ..||+.||.++.. ....+++|+...+.|..+..   .|-  
T Consensus       235 ~ey~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG--  311 (723)
T KOG2437|consen  235 QEYKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPG--  311 (723)
T ss_pred             ccccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCc--
Confidence            45667888886433          344556665544  4899999987765 66778999999999999843   333  


Q ss_pred             ccCccccceeEEEe--CCEEEEEecc-----------cceEEEeeCCCCCccCCCcCCCC-Cc-ccceeeeeeEeeCCE-
Q 040781          194 KDSAASTWLSVAVN--SRQLYVTEKY-----------SGITVSFDPSTKGWSGPFHLRQF-DH-EKKVFYSVITFANDR-  257 (316)
Q Consensus       194 ~~~~~~~~~~~~~~--~~~~y~~~~~-----------~~~i~~yD~~~~~W~~~~~l~~~-~~-~~~~~~~~l~~~~g~-  257 (316)
                      .+..+    -.+.+  ..++|++|.+           ...++.||.+++.|..+. +... +. -...+.+.+...+++ 
T Consensus       312 ~RsCH----RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls-~dt~~dGGP~~vfDHqM~Vd~~k~  386 (723)
T KOG2437|consen  312 ARSCH----RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLS-EDTAADGGPKLVFDHQMCVDSEKH  386 (723)
T ss_pred             chhhh----hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEec-ccccccCCcceeecceeeEecCcc
Confidence            33322    12223  2368887751           236899999999998665 2211 11 133444555555555 


Q ss_pred             -EEEEecCCC
Q 040781          258 -LIAVGLTGE  266 (316)
Q Consensus       258 -L~v~g~~~~  266 (316)
                       |||+||+..
T Consensus       387 ~iyVfGGr~~  396 (723)
T KOG2437|consen  387 MIYVFGGRIL  396 (723)
T ss_pred             eEEEecCeec
Confidence             999998753

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=97.46  E-value=0.00021  Score=43.22  Aligned_cols=36  Identities=19%  Similarity=0.171  Sum_probs=22.7

Q ss_pred             eEEEe-CCEEEEEecc------cceEEEeeCCCCCccCCCcCC
Q 040781          203 SVAVN-SRQLYVTEKY------SGITVSFDPSTKGWSGPFHLR  238 (316)
Q Consensus       203 ~~~~~-~~~~y~~~~~------~~~i~~yD~~~~~W~~~~~l~  238 (316)
                      +++.. ++.+|++||.      .+.++.||+.+++|++++.+|
T Consensus         6 ~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    6 SAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             EEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            44444 6899999983      246899999999999987555

>PLN02772 guanylate kinase

Probab=97.29  E-value=0.0034  Score=55.17  Aligned_cols=81  Identities=19%  Similarity=0.206  Sum_probs=58.4

Q ss_pred             CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEeCCEEEEEec---c
Q 040781          144 WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEK---Y  217 (316)
Q Consensus       144 ~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~---~  217 (316)
                      ++..+....+++++|++||..+.......+++||..|++|....   ..|.  ++..+   .++.+.+++++++++   .
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~--~r~Gh---Sa~v~~~~rilv~~~~~~~   98 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK--PCKGY---SAVVLNKDRILVIKKGSAP   98 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC--CCCcc---eEEEECCceEEEEeCCCCC
Confidence            45556777889999999997765446778999999999998863   3444  44444   155566899999975   3


Q ss_pred             cceEEEeeCCCC
Q 040781          218 SGITVSFDPSTK  229 (316)
Q Consensus       218 ~~~i~~yD~~~~  229 (316)
                      ...|+.+.+.|.
T Consensus        99 ~~~~w~l~~~t~  110 (398)
T PLN02772         99 DDSIWFLEVDTP  110 (398)
T ss_pred             ccceEEEEcCCH
Confidence            346777776654

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=97.00  E-value=0.017  Score=47.71  Aligned_cols=141  Identities=15%  Similarity=0.180  Sum_probs=82.3

Q ss_pred             EeeCCCCceeEccCCCCCCccceeeeec----CCEEEEEcCC----ceeeeecCCC----CceeecC-CCCCCCCCCEEE
Q 040781           85 AYDARSHVWIEIKNNQPSSFDFLLRSSH----STLLYTLSPS----KLSFSFDPLH----LAWHHVD-APRVWRTDPVVA  151 (316)
Q Consensus        85 ~~d~~~~~w~~~~~~~~~~~~~~~~~s~----~~~l~~~gg~----~~~~v~np~t----~~w~~lp-~~~~~~~~~~~~  151 (316)
                      .||+..++++.+.. ..    +.-++++    .|.+...||.    +.+..|+|.+    ..|.+.+ .|...|-.+...
T Consensus        50 ~yD~~tn~~rpl~v-~t----d~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~  124 (243)
T PF07250_consen   50 EYDPNTNTFRPLTV-QT----DTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT  124 (243)
T ss_pred             EEecCCCcEEeccC-CC----CCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence            39999999987743 22    2222222    2666777763    5677888876    6798887 477777776655


Q ss_pred             EE-CCEEEEEcCcCCCCCCCcEEEEEeCCCC-----CeeecCCCCccc-ccCccccceeEEEeCCEEEEEecccceEEEe
Q 040781          152 LV-GDKVVVAGGACDFEDDPLAVEMYSVDTR-----TWEICQSMPAVL-KDSAASTWLSVAVNSRQLYVTEKYSGITVSF  224 (316)
Q Consensus       152 ~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~-----~W~~~~~~p~~~-~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~y  224 (316)
                      .+ +++|+++||...     ...|.+.....     .|..+....... ..-.+  + ....-+|.+++.+....  ..|
T Consensus       125 ~L~DG~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP--~-~~llPdG~lFi~an~~s--~i~  194 (243)
T PF07250_consen  125 TLPDGRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYP--F-VHLLPDGNLFIFANRGS--IIY  194 (243)
T ss_pred             ECCCCCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccCccccCc--e-EEEcCCCCEEEEEcCCc--EEE
Confidence            44 689999999753     23555554321     222222111000 01111  1 22234788888886533  577


Q ss_pred             eCCCCCc-cCCCcCCCC
Q 040781          225 DPSTKGW-SGPFHLRQF  240 (316)
Q Consensus       225 D~~~~~W-~~~~~l~~~  240 (316)
                      |..++++ +.++.+|..
T Consensus       195 d~~~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  195 DYKTNTVVRTLPDLPGG  211 (243)
T ss_pred             eCCCCeEEeeCCCCCCC
Confidence            9998876 566666543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF13854 Kelch_5: Kelch motif

Probab=96.94  E-value=0.0035  Score=36.38  Aligned_cols=40  Identities=13%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             CCCCCCCCEEEEECCEEEEEcCcCC-CCCCCcEEEEEeCCC
Q 040781          141 PRVWRTDPVVALVGDKVVVAGGACD-FEDDPLAVEMYSVDT  180 (316)
Q Consensus       141 ~~~~~~~~~~~~~~~~v~~~gg~~~-~~~~~~~v~vy~~~t  180 (316)
                      +|.+|..++.+.++.++|++||... .......+.+||..+
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            3667888999999999999999874 444667788888765

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=96.77  E-value=0.023  Score=46.88  Aligned_cols=156  Identities=15%  Similarity=0.243  Sum_probs=86.5

Q ss_pred             CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC----CCeeecC-CCCccccc-
Q 040781          122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT----RTWEICQ-SMPAVLKD-  195 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t----~~W~~~~-~~p~~~~~-  195 (316)
                      ...-.+|||.|++++.+....-.-+..+...-+++++..||..+   ....+.+|++.+    ..|.+.. .|..  .| 
T Consensus        45 ~a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~---G~~~ir~~~p~~~~~~~~w~e~~~~m~~--~RW  119 (243)
T PF07250_consen   45 PAHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND---GNKAIRIFTPCTSDGTCDWTESPNDMQS--GRW  119 (243)
T ss_pred             eEEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc---cccceEEEecCCCCCCCCceECcccccC--CCc
Confidence            35678899999999988533222222223234689999998654   235577888765    6788774 4544  33 


Q ss_pred             CccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCC----Ccccceeee-eeEeeCCEEEEEecCCCCCCc
Q 040781          196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF----DHEKKVFYS-VITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~----~~~~~~~~~-~l~~~~g~L~v~g~~~~~~~~  270 (316)
                      +..    ...+-+|.+.++||..+..+.|-+....-.....++..    +......+. ..+.-+|+|++++...     
T Consensus       120 YpT----~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~-----  190 (243)
T PF07250_consen  120 YPT----ATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG-----  190 (243)
T ss_pred             ccc----ceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC-----
Confidence            333    44556899999999655444554442210111111111    001111222 2235589999998532     


Q ss_pred             ceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          271 KSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       271 ~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                        -.|+..+    ..+..+++..||..
T Consensus       191 --s~i~d~~----~n~v~~~lP~lPg~  211 (243)
T PF07250_consen  191 --SIIYDYK----TNTVVRTLPDLPGG  211 (243)
T ss_pred             --cEEEeCC----CCeEEeeCCCCCCC
Confidence              2234433    22323677778876

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=96.31  E-value=0.007  Score=53.87  Aligned_cols=162  Identities=18%  Similarity=0.185  Sum_probs=101.6

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCCccceeeeecC-------CEEEEEcC------------Cce
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHS-------TLLYTLSP------------SKL  124 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~-------~~l~~~gg------------~~~  124 (316)
                      ..+++|++-+  +...+.+.+.|+-..+.|..+.. ..  ..+..+++|.       .+||++|.            ..+
T Consensus       273 ~CiYLYGGWd--G~~~l~DFW~Y~v~e~~W~~iN~-~t--~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsD  347 (723)
T KOG2437|consen  273 ECVYLYGGWD--GTQDLADFWAYSVKENQWTCINR-DT--EGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSD  347 (723)
T ss_pred             cEEEEecCcc--cchhHHHHHhhcCCcceeEEeec-CC--CCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccc
Confidence            4677777777  44466777889999999998842 21  2234444443       46777663            378


Q ss_pred             eeeecCCCCceeecCC------CCCCCCCCEEEEECCE--EEEEcCcCCCC--CCCcEEEEEeCCCCCeeecC-CCCccc
Q 040781          125 SFSFDPLHLAWHHVDA------PRVWRTDPVVALVGDK--VVVAGGACDFE--DDPLAVEMYSVDTRTWEICQ-SMPAVL  193 (316)
Q Consensus       125 ~~v~np~t~~w~~lp~------~~~~~~~~~~~~~~~~--v~~~gg~~~~~--~~~~~v~vy~~~t~~W~~~~-~~p~~~  193 (316)
                      +++||-.|+.|.-+.-      -|..-.+|.+++.+.+  |||+||..-..  .....+..||.....|+... +.....
T Consensus       348 fW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~  427 (723)
T KOG2437|consen  348 FWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAG  427 (723)
T ss_pred             eEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcC
Confidence            9999999999998741      2223346677777777  99999864332  24566899999999998872 211100


Q ss_pred             cc-----CccccceeEEEeCCEEEEEecccc-----eEEEeeCCCCC
Q 040781          194 KD-----SAASTWLSVAVNSRQLYVTEKYSG-----ITVSFDPSTKG  230 (316)
Q Consensus       194 ~~-----~~~~~~~~~~~~~~~~y~~~~~~~-----~i~~yD~~~~~  230 (316)
                      +.     ..-...+-.+.++..+|+.||...     ..++||+..+.
T Consensus       428 ~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~  474 (723)
T KOG2437|consen  428 PVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH  474 (723)
T ss_pred             cchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence            10     000011234457889999998432     23566665544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=96.22  E-value=0.38  Score=44.84  Aligned_cols=38  Identities=26%  Similarity=0.322  Sum_probs=36.1

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      +..||.++...||..|+.++++.++.||+.|+.++...
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~  145 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD  145 (537)
T ss_pred             hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc
Confidence            67899999999999999999999999999999999876

>PLN02772 guanylate kinase

Probab=96.16  E-value=0.043  Score=48.42  Aligned_cols=73  Identities=19%  Similarity=0.294  Sum_probs=51.3

Q ss_pred             eEEEeCCEEEEEec------ccceEEEeeCCCCCccCCCcC--CCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceee
Q 040781          203 SVAVNSRQLYVTEK------YSGITVSFDPSTKGWSGPFHL--RQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLK  274 (316)
Q Consensus       203 ~~~~~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~l--~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~  274 (316)
                      +++..++++|++||      ..+.+.+||..+.+|.....+  +|+   .+..+.+.+..+++|++++....++    =.
T Consensus        29 tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~---~r~GhSa~v~~~~rilv~~~~~~~~----~~  101 (398)
T PLN02772         29 TSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPK---PCKGYSAVVLNKDRILVIKKGSAPD----DS  101 (398)
T ss_pred             eeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCC---CCCcceEEEECCceEEEEeCCCCCc----cc
Confidence            56778999999997      234789999999999875532  222   2334455666789999998765543    44


Q ss_pred             EEEeeccC
Q 040781          275 IWQVNIKG  282 (316)
Q Consensus       275 iw~l~~~~  282 (316)
                      ||-|+++.
T Consensus       102 ~w~l~~~t  109 (398)
T PLN02772        102 IWFLEVDT  109 (398)
T ss_pred             eEEEEcCC
Confidence            68887543

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=95.99  E-value=0.71  Score=37.93  Aligned_cols=177  Identities=7%  Similarity=0.019  Sum_probs=91.0

Q ss_pred             eEEeeCCCCceeEccCCCCCCc-ccee-eeecC-------CEEEEEcC------CceeeeecCCCCceeecCCCCCCC-C
Q 040781           83 AHAYDARSHVWIEIKNNQPSSF-DFLL-RSSHS-------TLLYTLSP------SKLSFSFDPLHLAWHHVDAPRVWR-T  146 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~-~~~~-~~s~~-------~~l~~~gg------~~~~~v~np~t~~w~~lp~~~~~~-~  146 (316)
                      ....||.+++|..+|. |..+. .... ....|       =++..+..      ...+.||+..|+.|+.+.+.+... .
T Consensus        16 ~~V~NP~T~~~~~LP~-~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~~   94 (230)
T TIGR01640        16 LVVWNPSTGQSRWLPT-PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHPL   94 (230)
T ss_pred             EEEECCCCCCEEecCC-CCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCccc
Confidence            6678999999999863 22110 0000 00011       12222211      246789999999999986322111 1


Q ss_pred             CCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEeccc--c--eEE
Q 040781          147 DPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYS--G--ITV  222 (316)
Q Consensus       147 ~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~--~--~i~  222 (316)
                      ....+.+++.+|-+...... .....+-.||..+.+|+...++|.  ..........+...+|.+.++....  .  .|+
T Consensus        95 ~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~P~--~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~IW  171 (230)
T TIGR01640        95 KSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPLPC--GNSDSVDYLSLINYKGKLAVLKQKKDTNNFDLW  171 (230)
T ss_pred             cCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeecCc--cccccccceEEEEECCEEEEEEecCCCCcEEEE
Confidence            11133467777766522111 111268889999999995223333  1111111124566678888876421  1  455


Q ss_pred             Eee-CCCCCccCCCcCCCC--CcccceeeeeeEeeCCEEEEEec
Q 040781          223 SFD-PSTKGWSGPFHLRQF--DHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       223 ~yD-~~~~~W~~~~~l~~~--~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      +.+ -++++|.+.-.++.+  ..........-+..+|++++...
T Consensus       172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            554 446679876555532  11111111222355788888875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.23  E-value=0.47  Score=39.51  Aligned_cols=114  Identities=12%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      |.++...- .+-+...||.++.=..+|++........-..  -..++.+--      .....++.||+.+.+|.+-. +|
T Consensus       200 Gsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~witt------wg~g~l~rfdPs~~sW~eyp-LP  272 (353)
T COG4257         200 GSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITT------WGTGSLHRFDPSVTSWIEYP-LP  272 (353)
T ss_pred             CcEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEec------cCCceeeEeCcccccceeee-CC
Confidence            55554421 1456677999987777764443222211111  123333331      12345889999999998763 22


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF  240 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~  240 (316)
                      ...++..+     ..|+ .+.+|+-+-..+.|..||+++.+|.+++ ++.+
T Consensus       273 gs~arpys-----~rVD~~grVW~sea~agai~rfdpeta~ftv~p-~pr~  317 (353)
T COG4257         273 GSKARPYS-----MRVDRHGRVWLSEADAGAIGRFDPETARFTVLP-IPRP  317 (353)
T ss_pred             CCCCCcce-----eeeccCCcEEeeccccCceeecCcccceEEEec-CCCC
Confidence            21233332     3333 5788887777788999999999988877 5544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=95.16  E-value=1.9  Score=38.63  Aligned_cols=105  Identities=14%  Similarity=0.222  Sum_probs=65.4

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eee-cCCCC-------CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHH-VDAPR-------VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~-lp~~~-------~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .++.+|+.+..+.++.+|..|++  |+. ++...       ........+..+++||+...       ...+..+|.+|+
T Consensus        68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-------~g~l~ald~~tG  140 (394)
T PRK11138         68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-------KGQVYALNAEDG  140 (394)
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-------CCEEEEEECCCC
Confidence            57899998877789999998875  653 32200       01112234456788887542       234778888766


Q ss_pred             --CeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccC
Q 040781          182 --TWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSG  233 (316)
Q Consensus       182 --~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~  233 (316)
                        .|+.-..  .  . ...    +..+.++.+|+..+ .+.+.++|+.+++  |+.
T Consensus       141 ~~~W~~~~~--~--~-~~s----sP~v~~~~v~v~~~-~g~l~ald~~tG~~~W~~  186 (394)
T PRK11138        141 EVAWQTKVA--G--E-ALS----RPVVSDGLVLVHTS-NGMLQALNESDGAVKWTV  186 (394)
T ss_pred             CCcccccCC--C--c-eec----CCEEECCEEEEECC-CCEEEEEEccCCCEeeee
Confidence              5876422  1  1 112    34556888888654 4578999998775  764

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.07  E-value=0.93  Score=38.48  Aligned_cols=108  Identities=12%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC-CCcccccCccc
Q 040781          122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS-MPAVLKDSAAS  199 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~-~p~~~~~~~~~  199 (316)
                      |..++.||+.+++|..+..- ..-.-..+... +.++++.|-..........+..||..+.+|..+.. .....+.... 
T Consensus        15 C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~-   92 (281)
T PF12768_consen   15 CPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT-   92 (281)
T ss_pred             CCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE-
Confidence            57899999999999977432 11111122223 56788777432222245678999999999988854 2111122111 


Q ss_pred             cceeEEE---eCCEEEEEecc---cceEEEeeCCCCCccCCCc
Q 040781          200 TWLSVAV---NSRQLYVTEKY---SGITVSFDPSTKGWSGPFH  236 (316)
Q Consensus       200 ~~~~~~~---~~~~~y~~~~~---~~~i~~yD~~~~~W~~~~~  236 (316)
                         ...+   +...+|+.|..   ...|..||  ..+|..+..
T Consensus        93 ---a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~  130 (281)
T PF12768_consen   93 ---ALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS  130 (281)
T ss_pred             ---EEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence               2222   34567776651   23577785  458887774

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.07  E-value=1.6  Score=35.79  Aligned_cols=160  Identities=17%  Similarity=0.203  Sum_probs=86.0

Q ss_pred             ceEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--ee-ecCCCCC--CCCCCEEEEEC
Q 040781           82 TAHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WH-HVDAPRV--WRTDPVVALVG  154 (316)
Q Consensus        82 ~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~-~lp~~~~--~~~~~~~~~~~  154 (316)
                      .+.++|...+  .|..-.  +-..  .......++.+|+....+.++.+|..|++  |+ .....+.  ..........+
T Consensus        47 ~l~~~d~~tG~~~W~~~~--~~~~--~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~  122 (238)
T PF13360_consen   47 NLYALDAKTGKVLWRFDL--PGPI--SGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDG  122 (238)
T ss_dssp             EEEEEETTTSEEEEEEEC--SSCG--GSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEET
T ss_pred             EEEEEECCCCCEEEEeec--cccc--cceeeecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEec
Confidence            3778998665  455431  2111  11224467787877655689999988875  76 3322111  22333455557


Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccC--ccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDS--AASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~--~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ..+++...       ...+..+|..+++  |+.-...+......  .......+.+.++.+|+...... +..+|..+++
T Consensus       123 ~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~-~~~~d~~tg~  194 (238)
T PF13360_consen  123 DRLYVGTS-------SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGR-VVAVDLATGE  194 (238)
T ss_dssp             TEEEEEET-------CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSS-EEEEETTTTE
T ss_pred             CEEEEEec-------cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCe-EEEEECCCCC
Confidence            77777652       2558889988774  87754332210100  00001144555678888876543 5677999987


Q ss_pred             --ccCCCcCCCCCcccceeeeeeEeeCCEEEEEe
Q 040781          231 --WSGPFHLRQFDHEKKVFYSVITFANDRLIAVG  262 (316)
Q Consensus       231 --W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g  262 (316)
                        |+..  +..       ........++.|++..
T Consensus       195 ~~w~~~--~~~-------~~~~~~~~~~~l~~~~  219 (238)
T PF13360_consen  195 KLWSKP--ISG-------IYSLPSVDGGTLYVTS  219 (238)
T ss_dssp             EEEEEC--SS--------ECECEECCCTEEEEEE
T ss_pred             EEEEec--CCC-------ccCCceeeCCEEEEEe
Confidence              6322  111       1112334567777766

...

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=95.02  E-value=2.3  Score=37.41  Aligned_cols=102  Identities=17%  Similarity=0.288  Sum_probs=58.9

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCC-----c------eeee--ecC------CC--CceeecCCC
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPS-----K------LSFS--FDP------LH--LAWHHVDAP  141 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~-----~------~~~v--~np------~t--~~w~~lp~~  141 (316)
                      ...||+....-...|.+..+...+ +..+.|+.||++...     .      .+.+  |++      ..  -.|+.||+|
T Consensus        88 t~vyDt~t~av~~~P~l~~pk~~p-isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   88 TLVYDTDTRAVATGPRLHSPKRCP-ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             eEEEECCCCeEeccCCCCCCCcce-EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            557999888777665211112223 333457779987642     1      4444  442      12  258889887


Q ss_pred             CCCCCCC-------EEEEE-CCEEEE-EcCcCCCCCCCcEEEEEeCCCCCeeecCC--CCc
Q 040781          142 RVWRTDP-------VVALV-GDKVVV-AGGACDFEDDPLAVEMYSVDTRTWEICQS--MPA  191 (316)
Q Consensus       142 ~~~~~~~-------~~~~~-~~~v~~-~gg~~~~~~~~~~v~vy~~~t~~W~~~~~--~p~  191 (316)
                      |......       +.+++ +..|++ +.+.      ......||..+.+|+....  ||.
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~------~~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGR------RWGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCC------ceEEEEEEcCCcceeeccceecCc
Confidence            7555431       33445 555665 2221      1347889999999999953  655

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.91  E-value=0.018  Score=48.45  Aligned_cols=38  Identities=21%  Similarity=0.284  Sum_probs=34.3

Q ss_pred             CCCCcHHHHHHHHhcCC-----hhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVP-----LIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp-----~~~l~r~r~VcK~W~~li~s~   55 (316)
                      +..||+|||..||.++=     +.+|-++.+|||.|+-..+.+
T Consensus       107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~  149 (366)
T KOG2997|consen  107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP  149 (366)
T ss_pred             hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence            46799999999999874     699999999999999999887

>PF13854 Kelch_5: Kelch motif

Probab=94.77  E-value=0.1  Score=30.06  Aligned_cols=31  Identities=19%  Similarity=0.228  Sum_probs=23.6

Q ss_pred             ccCccccceeEEEeCCEEEEEeccc-------ceEEEeeCCC
Q 040781          194 KDSAASTWLSVAVNSRQLYVTEKYS-------GITVSFDPST  228 (316)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~y~~~~~~-------~~i~~yD~~~  228 (316)
                      ++..+    ++++.++.+|++||..       +.++.||+.+
T Consensus         4 ~R~~h----s~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    4 PRYGH----SAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS   41 (42)
T ss_pred             Cccce----EEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence            56666    7788899999999954       3577787764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=94.21  E-value=2.3  Score=38.16  Aligned_cols=124  Identities=13%  Similarity=0.107  Sum_probs=72.9

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQ  187 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~  187 (316)
                      .++.+|+.+..+.++++|+.+++  |+.-  ....   ...+..+++||+...       ...+..+|..+++  |+.-.
T Consensus       255 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~-------~g~l~ald~~tG~~~W~~~~  322 (394)
T PRK11138        255 VGGVVYALAYNGNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQ-------NDRVYALDTRGGVELWSQSD  322 (394)
T ss_pred             ECCEEEEEEcCCeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcC-------CCeEEEEECCCCcEEEcccc
Confidence            35788887766789999999986  6541  1111   123446788888752       2347778887764  86422


Q ss_pred             CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--ccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781          188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      .. .   ....    +.++.++.+|+... .+.+.++|..+++  |+. . +...    . .....+..+|+|++...
T Consensus       323 ~~-~---~~~~----sp~v~~g~l~v~~~-~G~l~~ld~~tG~~~~~~-~-~~~~----~-~~s~P~~~~~~l~v~t~  384 (394)
T PRK11138        323 LL-H---RLLT----APVLYNGYLVVGDS-EGYLHWINREDGRFVAQQ-K-VDSS----G-FLSEPVVADDKLLIQAR  384 (394)
T ss_pred             cC-C---Cccc----CCEEECCEEEEEeC-CCEEEEEECCCCCEEEEE-E-cCCC----c-ceeCCEEECCEEEEEeC
Confidence            11 1   1112    44567899988764 4678899998876  322 1 1111    1 11223345778877764

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=94.18  E-value=2.4  Score=37.74  Aligned_cols=127  Identities=13%  Similarity=0.090  Sum_probs=72.5

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC--CeeecC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR--TWEICQ  187 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~~~  187 (316)
                      .++.+|+.+..+.++++|+.|++  |..-  .. .  ....+..+.+||+...       ...+..+|..++  .|+.-.
T Consensus       240 ~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~-~--~~~p~~~~~~vyv~~~-------~G~l~~~d~~tG~~~W~~~~  307 (377)
T TIGR03300       240 DGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS-S--YQGPAVDDNRLYVTDA-------DGVVVALDRRSGSELWKNDE  307 (377)
T ss_pred             ECCEEEEEEcCCEEEEEECCCCcEEEeec--cC-C--ccCceEeCCEEEEECC-------CCeEEEEECCCCcEEEcccc
Confidence            46788887766789999999875  5331  11 1  1123346788887642       234777888776  476521


Q ss_pred             CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781          188 SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT  264 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~  264 (316)
                       +..   ....    +.++.++.+|+.+ ..+.+.++|..+++-.  ..++.+   ........+..+++|++.+..
T Consensus       308 -~~~---~~~s----sp~i~g~~l~~~~-~~G~l~~~d~~tG~~~--~~~~~~---~~~~~~sp~~~~~~l~v~~~d  370 (377)
T TIGR03300       308 -LKY---RQLT----APAVVGGYLVVGD-FEGYLHWLSREDGSFV--ARLKTD---GSGIASPPVVVGDGLLVQTRD  370 (377)
T ss_pred             -ccC---Cccc----cCEEECCEEEEEe-CCCEEEEEECCCCCEE--EEEEcC---CCccccCCEEECCEEEEEeCC
Confidence             111   1112    3455788888865 4567899998776511  112222   111122334557788877653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=93.90  E-value=1.1  Score=37.96  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=42.5

Q ss_pred             CCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEE-eCCEEEEEec------ccceEEEeeCCCCCccCCCc
Q 040781          169 DPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV-NSRQLYVTEK------YSGITVSFDPSTKGWSGPFH  236 (316)
Q Consensus       169 ~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~~~y~~~~------~~~~i~~yD~~~~~W~~~~~  236 (316)
                      .+..+-+||..+.+|.....--.  .. -.    .+.. .++.+|+.|.      ....+..||..+.+|..+..
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~--G~-V~----~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~   81 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGIS--GT-VT----DLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG   81 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCce--EE-EE----EEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence            57889999999999998843212  11 11    3332 4677888765      23467899999999987764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.64  E-value=3.3  Score=34.34  Aligned_cols=134  Identities=14%  Similarity=0.048  Sum_probs=72.9

Q ss_pred             ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEcCCceeeeecCCCCceeecCCCCCC-----CCCCEEEEECC
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVW-----RTDPVVALVGD  155 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~-----~~~~~~~~~~~  155 (316)
                      .++.+|+..+.-..... +-  . ...... .++.+|+... ....++|+.++++..+......     +.+-....-++
T Consensus        23 ~i~~~~~~~~~~~~~~~-~~--~-~G~~~~~~~g~l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G   97 (246)
T PF08450_consen   23 RIYRVDPDTGEVEVIDL-PG--P-NGMAFDRPDGRLYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG   97 (246)
T ss_dssp             EEEEEETTTTEEEEEES-SS--E-EEEEEECTTSEEEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS
T ss_pred             EEEEEECCCCeEEEEec-CC--C-ceEEEEccCCEEEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC
Confidence            36778887776654432 22  1 112222 3577777654 3556669999998877543211     11112222346


Q ss_pred             EEEEEcCcCCCCCCC--cEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          156 KVVVAGGACDFEDDP--LAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~--~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .+|+-..........  ..+..++.. ++.+.+ ..+..     ..    ++++.  +..+|+.....+.|+.||+....
T Consensus        98 ~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~-----pN----Gi~~s~dg~~lyv~ds~~~~i~~~~~~~~~  167 (246)
T PF08450_consen   98 NLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGF-----PN----GIAFSPDGKTLYVADSFNGRIWRFDLDADG  167 (246)
T ss_dssp             -EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESS-----EE----EEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CEEEEecCCCccccccccceEEECCC-CeEEEEecCccc-----cc----ceEECCcchheeecccccceeEEEeccccc
Confidence            777754211111111  457777777 555554 22211     11    55555  55799998888899999986544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=93.37  E-value=1.2  Score=37.29  Aligned_cols=103  Identities=13%  Similarity=0.049  Sum_probs=66.6

Q ss_pred             cCCEEEEEcC---CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLSP---SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      ++|.+|-..|   .+.+..+|+.|++-..--+++.....-+++.+++++|..-=      ......+||..+  .+.+..
T Consensus        54 ~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~t--l~~~~~  125 (264)
T PF05096_consen   54 DDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNT--LKKIGT  125 (264)
T ss_dssp             ETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTT--TEEEEE
T ss_pred             CCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEcccc--ceEEEE
Confidence            5677777554   37899999999986544344545555678889999998851      224578899875  455544


Q ss_pred             CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      .+.  ...+-    |.+.++..+|+..|. +.|...||++-
T Consensus       126 ~~y--~~EGW----GLt~dg~~Li~SDGS-~~L~~~dP~~f  159 (264)
T PF05096_consen  126 FPY--PGEGW----GLTSDGKRLIMSDGS-SRLYFLDPETF  159 (264)
T ss_dssp             EE---SSS------EEEECSSCEEEE-SS-SEEEEE-TTT-
T ss_pred             Eec--CCcce----EEEcCCCEEEEECCc-cceEEECCccc
Confidence            444  34455    788888888888874 47789999753

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=93.37  E-value=3.7  Score=33.52  Aligned_cols=165  Identities=20%  Similarity=0.221  Sum_probs=88.5

Q ss_pred             eEEeeCCCC--ceeEccCCCCCCcccee--eeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCE
Q 040781           83 AHAYDARSH--VWIEIKNNQPSSFDFLL--RSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDK  156 (316)
Q Consensus        83 ~~~~d~~~~--~w~~~~~~~~~~~~~~~--~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~  156 (316)
                      +.++|+..+  .|..-.. +.  .....  ....++.+|+..+.+.++++|+.|++  |+.-  ++...... ....+.+
T Consensus         5 l~~~d~~tG~~~W~~~~~-~~--~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~--~~~~~~~~-~~~~~~~   78 (238)
T PF13360_consen    5 LSALDPRTGKELWSYDLG-PG--IGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFD--LPGPISGA-PVVDGGR   78 (238)
T ss_dssp             EEEEETTTTEEEEEEECS-SS--CSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEE--CSSCGGSG-EEEETTE
T ss_pred             EEEEECCCCCEEEEEECC-CC--CCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEee--ccccccce-eeecccc
Confidence            567887655  4654211 11  11112  22367888888777899999999986  4332  12221111 3557888


Q ss_pred             EEEEcCcCCCCCCCcEEEEEeCCCC--Ceee-cCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--c
Q 040781          157 VVVAGGACDFEDDPLAVEMYSVDTR--TWEI-CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--W  231 (316)
Q Consensus       157 v~~~gg~~~~~~~~~~v~vy~~~t~--~W~~-~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W  231 (316)
                      +|+...       ...+..+|..++  .|+. ....+........    ...+.++.+|+... .+.|.++|+++++  |
T Consensus        79 v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~g~l~~~d~~tG~~~w  146 (238)
T PF13360_consen   79 VYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSS----SPAVDGDRLYVGTS-SGKLVALDPKTGKLLW  146 (238)
T ss_dssp             EEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--S----EEEEETTEEEEEET-CSEEEEEETTTTEEEE
T ss_pred             cccccc-------eeeeEecccCCcceeeeecccccccccccccc----CceEecCEEEEEec-cCcEEEEecCCCcEEE
Confidence            887762       126888997776  4984 4332221111222    45566788887764 4578999998775  5


Q ss_pred             cCCCcCCCCCccc---ceeeeeeEeeCCEEEEEecCC
Q 040781          232 SGPFHLRQFDHEK---KVFYSVITFANDRLIAVGLTG  265 (316)
Q Consensus       232 ~~~~~l~~~~~~~---~~~~~~l~~~~g~L~v~g~~~  265 (316)
                      ..-...+......   ......++..+|.+++....+
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g  183 (238)
T PF13360_consen  147 KYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG  183 (238)
T ss_dssp             EEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS
T ss_pred             EeecCCCCCCcceeeecccccceEEECCEEEEEcCCC
Confidence            4322122210000   001234444567777776543

...

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.68  E-value=4.8  Score=32.92  Aligned_cols=117  Identities=11%  Similarity=0.082  Sum_probs=61.0

Q ss_pred             eeeecCCEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee-
Q 040781          108 LRSSHSTLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI-  185 (316)
Q Consensus       108 ~~~s~~~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~-  185 (316)
                      ++....|..|+..| .+.+-+|||..+...+--.-......-+....+..-+..+|      ....++++|..|++=.+ 
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~G------gDk~v~vwDV~TGkv~Rr   96 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCG------GDKAVQVWDVNTGKVDRR   96 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCC------CCceEEEEEcccCeeeee
Confidence            33333355455555 47899999998876543211111100001111222222222      23568899998876221 


Q ss_pred             cCCCCcccccCccccceeEEEeCC-EEEEEecccceEEEeeCCCCCccCCCcCC
Q 040781          186 CQSMPAVLKDSAASTWLSVAVNSR-QLYVTEKYSGITVSFDPSTKGWSGPFHLR  238 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~~~-~~y~~~~~~~~i~~yD~~~~~W~~~~~l~  238 (316)
                      ...-    ...-.    ++.++.. .+.+-|+....+.+||-.++.++.+..+.
T Consensus        97 ~rgH----~aqVN----tV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild  142 (307)
T KOG0316|consen   97 FRGH----LAQVN----TVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD  142 (307)
T ss_pred             cccc----cceee----EEEecCcceEEEeccccceeEEEEcccCCCCccchhh
Confidence            1100    11111    4555544 45556667778999999999977666443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=92.18  E-value=4.9  Score=33.89  Aligned_cols=139  Identities=14%  Similarity=0.132  Sum_probs=73.0

Q ss_pred             ceeeeecCCC-CceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781          123 KLSFSFDPLH-LAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW  201 (316)
Q Consensus       123 ~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~  201 (316)
                      +.+.|||..| ++-..+| ++..........-....+..||.+      ..+-||+..+..=+...++..  ....+..+
T Consensus        77 GklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLd------N~Csiy~ls~~d~~g~~~v~r--~l~gHtgy  147 (343)
T KOG0286|consen   77 GKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLD------NKCSIYPLSTRDAEGNVRVSR--ELAGHTGY  147 (343)
T ss_pred             CeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcC------ceeEEEecccccccccceeee--eecCccce
Confidence            6788898765 5556564 444433222222356788888865      347889887653222222111  01111112


Q ss_pred             e-eEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          202 L-SVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       202 ~-~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      + .+.+.++...+.+.......-||+++..=....  .  .+......-.+.-.+++.++-|++...     -+||.+.
T Consensus       148 lScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f--~--GH~gDV~slsl~p~~~ntFvSg~cD~~-----aklWD~R  217 (343)
T KOG0286|consen  148 LSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVF--H--GHTGDVMSLSLSPSDGNTFVSGGCDKS-----AKLWDVR  217 (343)
T ss_pred             eEEEEEcCCCceEecCCCceEEEEEcccceEEEEe--c--CCcccEEEEecCCCCCCeEEecccccc-----eeeeecc
Confidence            1 344455666666654446678999987621111  1  111222222333347788888877654     6678776

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=91.81  E-value=7.5  Score=34.88  Aligned_cols=103  Identities=11%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             EEEEEcCCceeeeecCCCCceeecCCCCCCC--CCCEE-EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWR--TDPVV-ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~--~~~~~-~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      .++..|-.+-+|.||-.|.+..++.++-...  ....+ +.....++++.|..      ..+.+....|+.|-.--.++-
T Consensus       272 ~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~KieG  345 (514)
T KOG2055|consen  272 VIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEG  345 (514)
T ss_pred             EEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeecc
Confidence            4444444577899999999998886544332  11111 22345566666633      337777788888754333322


Q ss_pred             ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        .....    ....++..+|+.++. +-|++||+..+.
T Consensus       346 --~v~~~----~fsSdsk~l~~~~~~-GeV~v~nl~~~~  377 (514)
T KOG2055|consen  346 --VVSDF----TFSSDSKELLASGGT-GEVYVWNLRQNS  377 (514)
T ss_pred             --EEeeE----EEecCCcEEEEEcCC-ceEEEEecCCcc
Confidence              11111    222344556666654 578999999874

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=91.62  E-value=2.6  Score=37.09  Aligned_cols=146  Identities=16%  Similarity=0.178  Sum_probs=75.5

Q ss_pred             CCEEEEEc-CCceeeeecCCCCc--eee-----cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC--C
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLA--WHH-----VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD--T  180 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~--w~~-----lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~--t  180 (316)
                      +..+|+.. |.+.+++|+.....  ...     +|+-..||   .+++.  +..+|++...      ...+.+|+..  +
T Consensus       155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR---h~~f~pdg~~~Yv~~e~------s~~v~v~~~~~~~  225 (345)
T PF10282_consen  155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR---HLAFSPDGKYAYVVNEL------SNTVSVFDYDPSD  225 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE---EEEE-TTSSEEEEEETT------TTEEEEEEEETTT
T ss_pred             CCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc---EEEEcCCcCEEEEecCC------CCcEEEEeecccC
Confidence            46777765 67888888665433  433     33323333   23333  3578888753      3446666555  6


Q ss_pred             CCeeecC---CCCccccc--CccccceeEEEe--CCEEEEEecccceEEEeeCC--CCCccCCCcCCCCCcccceeeeee
Q 040781          181 RTWEICQ---SMPAVLKD--SAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS--TKGWSGPFHLRQFDHEKKVFYSVI  251 (316)
Q Consensus       181 ~~W~~~~---~~p~~~~~--~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~--~~~W~~~~~l~~~~~~~~~~~~~l  251 (316)
                      +.++.+.   .+|.....  ..+    ++++.  +..+|+.....+.|.+|++.  ++..+.+...+..   ...-....
T Consensus       226 g~~~~~~~~~~~~~~~~~~~~~~----~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~  298 (345)
T PF10282_consen  226 GSLTEIQTISTLPEGFTGENAPA----EIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFA  298 (345)
T ss_dssp             TEEEEEEEEESCETTSCSSSSEE----EEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEE
T ss_pred             CceeEEEEeeeccccccccCCce----eEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEE
Confidence            6776653   34332111  122    45555  67789988777889999884  3443333322221   01011112


Q ss_pred             EeeCC-EEEEEecCCCCCCcceeeEEEee
Q 040781          252 TFAND-RLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       252 ~~~~g-~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      +.-+| .|++.....+     .+.++..|
T Consensus       299 ~s~~g~~l~Va~~~s~-----~v~vf~~d  322 (345)
T PF10282_consen  299 FSPDGRYLYVANQDSN-----TVSVFDID  322 (345)
T ss_dssp             E-TTSSEEEEEETTTT-----EEEEEEEE
T ss_pred             EeCCCCEEEEEecCCC-----eEEEEEEe
Confidence            22344 4555543322     38889887

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=91.46  E-value=9.8  Score=34.29  Aligned_cols=144  Identities=15%  Similarity=0.118  Sum_probs=69.2

Q ss_pred             CCEEEEEcC-CceeeeecCCCCc-eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC-C
Q 040781          113 STLLYTLSP-SKLSFSFDPLHLA-WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS-M  189 (316)
Q Consensus       113 ~~~l~~~gg-~~~~~v~np~t~~-w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~-~  189 (316)
                      .|.|++.|+ .+.+-+||-.++. .+.+..-..+-....+...+.++++.|+.      ...+...|..+.. ...+- -
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sD------d~v~k~~d~s~a~-v~~~l~~  151 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSD------DKVVKYWDLSTAY-VQAELSG  151 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCC------CceEEEEEcCCcE-EEEEecC
Confidence            377777774 5789999933321 12221111111111223346677777752      2334444444433 11110 0


Q ss_pred             CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED  269 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~  269 (316)
                      ..+.-++..     +.-.++.+.+.|++.+.|-.||..+.+ ..+..+...   ++.......-.++.+..+||  .   
T Consensus       152 htDYVR~g~-----~~~~~~hivvtGsYDg~vrl~DtR~~~-~~v~elnhg---~pVe~vl~lpsgs~iasAgG--n---  217 (487)
T KOG0310|consen  152 HTDYVRCGD-----ISPANDHIVVTGSYDGKVRLWDTRSLT-SRVVELNHG---CPVESVLALPSGSLIASAGG--N---  217 (487)
T ss_pred             CcceeEeec-----cccCCCeEEEecCCCceEEEEEeccCC-ceeEEecCC---CceeeEEEcCCCCEEEEcCC--C---
Confidence            000122211     122346788899999999999998874 223323322   22221111122334444443  2   


Q ss_pred             cceeeEEEee
Q 040781          270 VKSLKIWQVN  279 (316)
Q Consensus       270 ~~~~~iw~l~  279 (316)
                        .++||.+-
T Consensus       218 --~vkVWDl~  225 (487)
T KOG0310|consen  218 --SVKVWDLT  225 (487)
T ss_pred             --eEEEEEec
Confidence              38999997

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=90.66  E-value=11  Score=32.82  Aligned_cols=102  Identities=13%  Similarity=0.114  Sum_probs=54.2

Q ss_pred             EEEEEc-CCceeeeecCCC-CceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC-CCCeeecCCC
Q 040781          115 LLYTLS-PSKLSFSFDPLH-LAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD-TRTWEICQSM  189 (316)
Q Consensus       115 ~l~~~g-g~~~~~v~np~t-~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~-t~~W~~~~~~  189 (316)
                      .+|+.. ..+.+.+||..+ +++..+...+.......++..  +..+|+.+.      ....+.+|+.. +++++.+...
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~   76 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAES   76 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeee
Confidence            456664 346788888754 455444322222222223332  345566443      12446677765 4567655433


Q ss_pred             CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC
Q 040781          190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST  228 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~  228 (316)
                      +.  .....    .+++.  +..+|+.....+.|.+||+.+
T Consensus        77 ~~--~~~p~----~i~~~~~g~~l~v~~~~~~~v~v~~~~~  111 (330)
T PRK11028         77 PL--PGSPT----HISTDHQGRFLFSASYNANCVSVSPLDK  111 (330)
T ss_pred             cC--CCCce----EEEECCCCCEEEEEEcCCCeEEEEEECC
Confidence            32  11111    34444  567888876667889999864

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=90.56  E-value=12  Score=33.22  Aligned_cols=134  Identities=10%  Similarity=0.180  Sum_probs=68.9

Q ss_pred             CCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCC-------CCCCCCCEEEEECCEEEEEcC
Q 040781           90 SHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAP-------RVWRTDPVVALVGDKVVVAGG  162 (316)
Q Consensus        90 ~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~-------~~~~~~~~~~~~~~~v~~~gg  162 (316)
                      .+.|..++. ..  ..-.-...+.|.+|++...+.++++++.-+ -.++.+.       ........++...++++++..
T Consensus       189 ~~~Wt~l~~-~~--~~~~DIi~~kGkfYAvD~~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R  264 (373)
T PLN03215        189 GNVLKALKQ-MG--YHFSDIIVHKGQTYALDSIGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGELYIVER  264 (373)
T ss_pred             CCeeeEccC-CC--ceeeEEEEECCEEEEEcCCCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEEEEEEE
Confidence            357777742 11  111123447788999876678888884321 1222111       011112224345567777765


Q ss_pred             cCCCC-----------CCCcEEEEE--eCCCCCeeecCCCCcc--cccCcccccee-----EEEeCCEEEEEecccceEE
Q 040781          163 ACDFE-----------DDPLAVEMY--SVDTRTWEICQSMPAV--LKDSAASTWLS-----VAVNSRQLYVTEKYSGITV  222 (316)
Q Consensus       163 ~~~~~-----------~~~~~v~vy--~~~t~~W~~~~~~p~~--~~~~~~~~~~~-----~~~~~~~~y~~~~~~~~i~  222 (316)
                      .....           .....++||  |.++.+|.++..+...  +-.... .++-     ....++.+|+....  ...
T Consensus       265 ~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~-s~sv~a~e~pG~k~NcIYFtdd~--~~~  341 (373)
T PLN03215        265 LPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDT-CFSVLAHEFYGCLPNSIYFTEDT--MPK  341 (373)
T ss_pred             EccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCc-cEEEecCCCCCccCCEEEEECCC--cce
Confidence            32110           112457777  6667899999876431  000111 0000     01235788888654  456


Q ss_pred             EeeCCCCC
Q 040781          223 SFDPSTKG  230 (316)
Q Consensus       223 ~yD~~~~~  230 (316)
                      +||++.++
T Consensus       342 v~~~~dg~  349 (373)
T PLN03215        342 VFKLDNGN  349 (373)
T ss_pred             EEECCCCC
Confidence            88888877

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=90.05  E-value=4.9  Score=33.80  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             EEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781          116 LYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV  192 (316)
Q Consensus       116 l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~  192 (316)
                      +|+.+ ..+.+.+||+.+++....-.....  ...++..  +..+++.++      ....+.+||..+++....  ++. 
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~--~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~--~~~-   71 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR--PRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGT--LPS-   71 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC--CCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEe--ccC-
Confidence            45554 357899999988764332111111  1122222  334666654      224588899888765432  111 


Q ss_pred             cccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781          193 LKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       193 ~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       .....    .+++  .+..+|+.++..+.|..||+.+..
T Consensus        72 -~~~~~----~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~  106 (300)
T TIGR03866        72 -GPDPE----LFALHPNGKILYIANEDDNLVTVIDIETRK  106 (300)
T ss_pred             -CCCcc----EEEECCCCCEEEEEcCCCCeEEEEECCCCe
Confidence             11111    2222  345677776655678888887643

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=89.86  E-value=0.32  Score=42.96  Aligned_cols=38  Identities=16%  Similarity=0.311  Sum_probs=35.4

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      .-.||.|++..||+.|..+++.|++.+|+.|+-++.+.
T Consensus        72 ~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            45799999999999999999999999999999998775

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=89.68  E-value=12  Score=35.24  Aligned_cols=110  Identities=15%  Similarity=0.152  Sum_probs=64.8

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .++.||+.+..+.++.+|..|++  |+.-+..+..        ......++.+++||+...       ...+..+|.+|+
T Consensus        68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-------dg~l~ALDa~TG  140 (527)
T TIGR03075        68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-------DARLVALDAKTG  140 (527)
T ss_pred             ECCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-------CCEEEEEECCCC
Confidence            47898987766789999999875  6543221110        011234456778776432       234777888877


Q ss_pred             C--eeecC-CCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781          182 T--WEICQ-SMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG  233 (316)
Q Consensus       182 ~--W~~~~-~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~  233 (316)
                      +  |+.-. ..... ....+    +..+.++.+|+...     ..+.|.+||.++++  |+.
T Consensus       141 k~~W~~~~~~~~~~-~~~ts----sP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~  197 (527)
T TIGR03075       141 KVVWSKKNGDYKAG-YTITA----APLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR  197 (527)
T ss_pred             CEEeeccccccccc-ccccC----CcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence            5  87542 22110 01112    44566788887542     24678999998775  653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=89.65  E-value=4.6  Score=33.79  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          149 VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       149 ~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      ++.. .++.+|---|..    ..+.+..||+.|++=....++|.  ...+-    |+++.++.+|.+.-..+..+.||..
T Consensus        49 GL~~~~~g~LyESTG~y----G~S~l~~~d~~tg~~~~~~~l~~--~~FgE----Git~~~d~l~qLTWk~~~~f~yd~~  118 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLY----GQSSLRKVDLETGKVLQSVPLPP--RYFGE----GITILGDKLYQLTWKEGTGFVYDPN  118 (264)
T ss_dssp             EEEEEETTEEEEEECST----TEEEEEEEETTTSSEEEEEE-TT--T--EE----EEEEETTEEEEEESSSSEEEEEETT
T ss_pred             cEEecCCCEEEEeCCCC----CcEEEEEEECCCCcEEEEEECCc--cccce----eEEEECCEEEEEEecCCeEEEEccc
Confidence            4544 456666654532    34779999999998655566666  45556    8999999999999878889999997


Q ss_pred             CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecC
Q 040781          228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLT  264 (316)
Q Consensus       228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~  264 (316)
                      +  ++.+...+.+     .....|...+.+|++-.|.
T Consensus       119 t--l~~~~~~~y~-----~EGWGLt~dg~~Li~SDGS  148 (264)
T PF05096_consen  119 T--LKKIGTFPYP-----GEGWGLTSDGKRLIMSDGS  148 (264)
T ss_dssp             T--TEEEEEEE-S-----SS--EEEECSSCEEEE-SS
T ss_pred             c--ceEEEEEecC-----CcceEEEcCCCEEEEECCc
Confidence            4  4444444433     1223444555566665553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=89.59  E-value=13  Score=32.25  Aligned_cols=149  Identities=15%  Similarity=0.104  Sum_probs=70.3

Q ss_pred             cCCEEEEEc-CCceeeeecCCC-Cceee-------cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC-
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLH-LAWHH-------VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVD-  179 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t-~~w~~-------lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~-  179 (316)
                      .+..+|+.. +.+.+.+||..+ +....       ++.-..++   .++..  +..+|+...      ....+.+|+.. 
T Consensus       136 ~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~---~~~~~pdg~~lyv~~~------~~~~v~v~~~~~  206 (330)
T PRK11028        136 DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPR---HMVFHPNQQYAYCVNE------LNSSVDVWQLKD  206 (330)
T ss_pred             CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCc---eEEECCCCCEEEEEec------CCCEEEEEEEeC
Confidence            356777766 567899998866 33221       11111111   23322  346667643      23456677765 


Q ss_pred             -CCCeeecC---CCCcccccCccccceeEE--EeCCEEEEEecccceEEEeeCCCC--CccCCCcCCCCCcccceeeeee
Q 040781          180 -TRTWEICQ---SMPAVLKDSAASTWLSVA--VNSRQLYVTEKYSGITVSFDPSTK--GWSGPFHLRQFDHEKKVFYSVI  251 (316)
Q Consensus       180 -t~~W~~~~---~~p~~~~~~~~~~~~~~~--~~~~~~y~~~~~~~~i~~yD~~~~--~W~~~~~l~~~~~~~~~~~~~l  251 (316)
                       +++.+.+.   .+|........  -.++.  -++..+|+.....+.|.+||..++  .+..+...+...  .. ....+
T Consensus       207 ~~~~~~~~~~~~~~p~~~~~~~~--~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~--~p-~~~~~  281 (330)
T PRK11028        207 PHGEIECVQTLDMMPADFSDTRW--AADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTET--QP-RGFNI  281 (330)
T ss_pred             CCCCEEEEEEEecCCCcCCCCcc--ceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccc--cC-CceEE
Confidence             45554442   23331111100  00222  235678887666678888887543  333233222110  00 01122


Q ss_pred             EeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          252 TFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       252 ~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ...+..|++.....     ..+.+|.++
T Consensus       282 ~~dg~~l~va~~~~-----~~v~v~~~~  304 (330)
T PRK11028        282 DHSGKYLIAAGQKS-----HHISVYEID  304 (330)
T ss_pred             CCCCCEEEEEEccC-----CcEEEEEEc
Confidence            22344566655322     248999987

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.52  E-value=12  Score=31.60  Aligned_cols=133  Identities=20%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVL  193 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~  193 (316)
                      |.|.+++..+-.=..||.++.-+..|.+...-.....+.-++.|+...-..      ..+..-|+.+..=+.+ +.|...
T Consensus       159 G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslag------naiaridp~~~~aev~-p~P~~~  231 (353)
T COG4257         159 GNLWFTGQIGAYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAG------NAIARIDPFAGHAEVV-PQPNAL  231 (353)
T ss_pred             ccEEEeeccccceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccc------cceEEcccccCCccee-cCCCcc
Confidence            777777755455578999998888875543333323333355555543111      1133344544432222 122211


Q ss_pred             ccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEE
Q 040781          194 KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIA  260 (316)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v  260 (316)
                      .......|.   ---+.+|+..-.++.+..||+.+..|.+-+ ||..   ....+..-+...|++.+
T Consensus       232 ~~gsRriws---dpig~~wittwg~g~l~rfdPs~~sW~eyp-LPgs---~arpys~rVD~~grVW~  291 (353)
T COG4257         232 KAGSRRIWS---DPIGRAWITTWGTGSLHRFDPSVTSWIEYP-LPGS---KARPYSMRVDRHGRVWL  291 (353)
T ss_pred             ccccccccc---CccCcEEEeccCCceeeEeCcccccceeee-CCCC---CCCcceeeeccCCcEEe
Confidence            111111111   123678888766778999999999999877 6653   11222233444566655

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=88.32  E-value=18  Score=32.14  Aligned_cols=131  Identities=17%  Similarity=0.151  Sum_probs=71.1

Q ss_pred             eEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCEEEEECCEEE
Q 040781           83 AHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPVVALVGDKVV  158 (316)
Q Consensus        83 ~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~~~~~~~~v~  158 (316)
                      ++++|...+  .|..- . +..  ........++.+|+.+..+.++.+|+.|++  |+.-.+ ....  ......+++++
T Consensus        77 v~a~d~~tG~~~W~~~-~-~~~--~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~~~~--~~p~v~~~~v~  149 (377)
T TIGR03300        77 VVALDAETGKRLWRVD-L-DER--LSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLS-SEVL--SPPLVANGLVV  149 (377)
T ss_pred             EEEEEccCCcEeeeec-C-CCC--cccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccC-ceee--cCCEEECCEEE
Confidence            778887654  47533 1 211  111122356888876666789999998876  643211 1111  11223566776


Q ss_pred             EEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC--cc
Q 040781          159 VAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG--WS  232 (316)
Q Consensus       159 ~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~--W~  232 (316)
                      +..+       ...+..+|..+++  |+.-...+........    +.++.++.+|+.. ..+.+.++|+.+++  |+
T Consensus       150 v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~----sp~~~~~~v~~~~-~~g~v~ald~~tG~~~W~  215 (377)
T TIGR03300       150 VRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSA----SPVIADGGVLVGF-AGGKLVALDLQTGQPLWE  215 (377)
T ss_pred             EECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCC----CCEEECCEEEEEC-CCCEEEEEEccCCCEeee
Confidence            6532       2347788887764  8764322210011112    3345567666543 44578999987764  64

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=87.98  E-value=10  Score=31.29  Aligned_cols=101  Identities=20%  Similarity=0.254  Sum_probs=60.6

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      .+.||.+. ..+.++.+||.+++-..+..+.    ..+++..  ++++|+...        ....++|+.+++++.+...
T Consensus        11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen   11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS--------GGIAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             TTEEEEEETTTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET--------TCEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEEcCCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc--------CceEEEecCCCcEEEEeec
Confidence            46667766 4578999999998876543222    1233333  577777753        2356679999999887543


Q ss_pred             Cc---ccccCccccceeEEEeCCEEEEEecc------c--ceEEEeeCCCCC
Q 040781          190 PA---VLKDSAASTWLSVAVNSRQLYVTEKY------S--GITVSFDPSTKG  230 (316)
Q Consensus       190 p~---~~~~~~~~~~~~~~~~~~~~y~~~~~------~--~~i~~yD~~~~~  230 (316)
                      +.   ...+.+.    .++--+|.+|+....      .  +.|+.+++. ++
T Consensus        79 ~~~~~~~~~~ND----~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~  125 (246)
T PF08450_consen   79 PDGGVPFNRPND----VAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK  125 (246)
T ss_dssp             ETTCSCTEEEEE----EEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE
T ss_pred             cCCCcccCCCce----EEEcCCCCEEEEecCCCccccccccceEEECCC-Ce
Confidence            21   0122222    222336779987541      1  568999998 44

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.60  E-value=4  Score=36.67  Aligned_cols=138  Identities=13%  Similarity=0.182  Sum_probs=76.5

Q ss_pred             EcCCceeeeecCCCCceeecCCCCCCCCC-CEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCccccc
Q 040781          119 LSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKD  195 (316)
Q Consensus       119 ~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~  195 (316)
                      +.++.++-+|+..+.+-.+.  ....+.. .+..+ .++++.++|+.      ...+.+||..+   +.+ ..+ .  .+
T Consensus        44 Vt~S~rvqly~~~~~~~~k~--~srFk~~v~s~~fR~DG~LlaaGD~------sG~V~vfD~k~---r~iLR~~-~--ah  109 (487)
T KOG0310|consen   44 VTSSVRVQLYSSVTRSVRKT--FSRFKDVVYSVDFRSDGRLLAAGDE------SGHVKVFDMKS---RVILRQL-Y--AH  109 (487)
T ss_pred             EecccEEEEEecchhhhhhh--HHhhccceeEEEeecCCeEEEccCC------cCcEEEecccc---HHHHHHH-h--hc
Confidence            33345788888877655432  1111111 12222 36889999863      34599999554   222 112 1  11


Q ss_pred             CccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeE
Q 040781          196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKI  275 (316)
Q Consensus       196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~i  275 (316)
                      ..+.+..-.+..++.+.+.++....+..||..+..-  ...+...  +....+..+.-.++++++.|+++..     +.+
T Consensus       110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v--~~~l~~h--tDYVR~g~~~~~~~hivvtGsYDg~-----vrl  180 (487)
T KOG0310|consen  110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV--QAELSGH--TDYVRCGDISPANDHIVVTGSYDGK-----VRL  180 (487)
T ss_pred             cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE--EEEecCC--cceeEeeccccCCCeEEEecCCCce-----EEE
Confidence            111111122345788899888777788888887761  1112222  1223334455567889999987664     777


Q ss_pred             EEee
Q 040781          276 WQVN  279 (316)
Q Consensus       276 w~l~  279 (316)
                      |...
T Consensus       181 ~DtR  184 (487)
T KOG0310|consen  181 WDTR  184 (487)
T ss_pred             EEec
Confidence            8776

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=87.41  E-value=36  Score=35.10  Aligned_cols=114  Identities=14%  Similarity=0.184  Sum_probs=62.1

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCC-------------CCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEE
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPR-------------VWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMY  176 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~-------------~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy  176 (316)
                      ++.+|+.. +.+.+.++|+.++....+..-.             ....-.++++.  +..+|+...      ....+.+|
T Consensus       694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs------~n~~Irv~  767 (1057)
T PLN02919        694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS------ESSSIRAL  767 (1057)
T ss_pred             CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC------CCCeEEEE
Confidence            57777765 5678999999887654332100             00011123332  345777653      23568889


Q ss_pred             eCCCCCeeecC---C-CCc---cccc-----C--ccccceeEEEe-CCEEEEEecccceEEEeeCCCCCcc
Q 040781          177 SVDTRTWEICQ---S-MPA---VLKD-----S--AASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWS  232 (316)
Q Consensus       177 ~~~t~~W~~~~---~-~p~---~~~~-----~--~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~  232 (316)
                      |..++.-..+.   + .+.   .+..     .  ....-.++++. +|.+|+.....+.|.+||+.++...
T Consensus       768 D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~  838 (1057)
T PLN02919        768 DLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT  838 (1057)
T ss_pred             ECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence            88876533221   0 000   0000     0  00001155554 4679999988889999999877644

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=85.86  E-value=23  Score=30.82  Aligned_cols=108  Identities=14%  Similarity=0.152  Sum_probs=60.4

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecC-----CCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVD-----APRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI  185 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp-----~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~  185 (316)
                      ..|+... |.+.+++|+...+.....-     +-..+|.   ++++  +.-.|++...+    ....+..||...++-+.
T Consensus       157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRH---i~FHpn~k~aY~v~EL~----stV~v~~y~~~~g~~~~  229 (346)
T COG2706         157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRH---IVFHPNGKYAYLVNELN----STVDVLEYNPAVGKFEE  229 (346)
T ss_pred             CEEEEeecCCceEEEEEcccCccccccccccCCCCCcce---EEEcCCCcEEEEEeccC----CEEEEEEEcCCCceEEE
Confidence            4666666 6788999987766554432     2222321   2222  34567776432    22345567776778777


Q ss_pred             cC---CCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781          186 CQ---SMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST  228 (316)
Q Consensus       186 ~~---~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~  228 (316)
                      ++   .+|.++.......-..+.-+|..+|+.....+.|.+|-+..
T Consensus       230 lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~  275 (346)
T COG2706         230 LQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP  275 (346)
T ss_pred             eeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence            74   46665444333111112233677899887667888885543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=85.26  E-value=20  Score=29.54  Aligned_cols=106  Identities=14%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             ecCCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEEC-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          111 SHSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVG-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       111 s~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      +.+..++..||.+.+.+||..|++-.+ +. -.....+ ++.+-. ..|++-|+.      ...+.++|-++++-+.+.-
T Consensus        69 ~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVN-tV~fNeesSVv~Sgsf------D~s~r~wDCRS~s~ePiQi  140 (307)
T KOG0316|consen   69 SDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVN-TVRFNEESSVVASGSF------DSSVRLWDCRSRSFEPIQI  140 (307)
T ss_pred             ccccccccCCCCceEEEEEcccCeeeeecc-cccceee-EEEecCcceEEEeccc------cceeEEEEcccCCCCccch
Confidence            344566666677899999999987532 21 0000000 111112 345555553      3558888888877665544


Q ss_pred             CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +..  ....-    ......+...+.|...+.+..||+..++
T Consensus       141 lde--a~D~V----~Si~v~~heIvaGS~DGtvRtydiR~G~  176 (307)
T KOG0316|consen  141 LDE--AKDGV----SSIDVAEHEIVAGSVDGTVRTYDIRKGT  176 (307)
T ss_pred             hhh--hcCce----eEEEecccEEEeeccCCcEEEEEeecce
Confidence            322  22211    2223345566777777889999998776

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=82.70  E-value=20  Score=31.12  Aligned_cols=100  Identities=12%  Similarity=0.072  Sum_probs=58.7

Q ss_pred             ceeeeecCCCC-----ceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCCCcccccC
Q 040781          123 KLSFSFDPLHL-----AWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSMPAVLKDS  196 (316)
Q Consensus       123 ~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~p~~~~~~  196 (316)
                      +.+++|+....     +.+.+......-.-.+++.+++++++..|        ..+.+|+...++ +...+....  ...
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~--~~~  131 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDS--PFY  131 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-B--SSS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecc--eEE
Confidence            67888877664     44444322222222355667888665545        568899988887 776654433  222


Q ss_pred             ccccceeEEEeCCEEEEEecccc-eEEEeeCCCCCccCCCc
Q 040781          197 AASTWLSVAVNSRQLYVTEKYSG-ITVSFDPSTKGWSGPFH  236 (316)
Q Consensus       197 ~~~~~~~~~~~~~~~y~~~~~~~-~i~~yD~~~~~W~~~~~  236 (316)
                      ..    ++.+.++.+++.+...+ .++.||.+..+...+..
T Consensus       132 i~----sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~  168 (321)
T PF03178_consen  132 IT----SLSVFKNYILVGDAMKSVSLLRYDEENNKLILVAR  168 (321)
T ss_dssp             EE----EEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEE
T ss_pred             EE----EEeccccEEEEEEcccCEEEEEEEccCCEEEEEEe
Confidence            22    67777888887765433 35677886666555553

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=81.63  E-value=22  Score=32.48  Aligned_cols=66  Identities=11%  Similarity=0.226  Sum_probs=38.6

Q ss_pred             CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEE-eCCEEEEEecccceEEEeeCCCCC
Q 040781          154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAV-NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +++-.++||      ....+-|.|..+-+=+.-..++..-..+.     +.++ -+..+++..-..+.|.+||+.+++
T Consensus       476 dgrtLivGG------eastlsiWDLAapTprikaeltssapaCy-----ALa~spDakvcFsccsdGnI~vwDLhnq~  542 (705)
T KOG0639|consen  476 DGRTLIVGG------EASTLSIWDLAAPTPRIKAELTSSAPACY-----ALAISPDAKVCFSCCSDGNIAVWDLHNQT  542 (705)
T ss_pred             CCceEEecc------ccceeeeeeccCCCcchhhhcCCcchhhh-----hhhcCCccceeeeeccCCcEEEEEcccce
Confidence            567777887      34667787777655333333332111111     2222 255666665566788999999877

>PLN00181 protein SPA1-RELATED; Provisional

Probab=80.98  E-value=51  Score=32.77  Aligned_cols=101  Identities=12%  Similarity=-0.016  Sum_probs=49.6

Q ss_pred             CEEEEEcC-CceeeeecCCCCcee-ecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          114 TLLYTLSP-SKLSFSFDPLHLAWH-HVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       114 ~~l~~~gg-~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      +.+++.|+ .+.+.+||..++... .+.   .......+..  .++..++.|+.      ...+.+||..+..= .+..+
T Consensus       588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~---~~~~v~~v~~~~~~g~~latgs~------dg~I~iwD~~~~~~-~~~~~  657 (793)
T PLN00181        588 PTLLASGSDDGSVKLWSINQGVSIGTIK---TKANICCVQFPSESGRSLAFGSA------DHKVYYYDLRNPKL-PLCTM  657 (793)
T ss_pred             CCEEEEEcCCCEEEEEECCCCcEEEEEe---cCCCeEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCCc-cceEe
Confidence            33344443 467888988765432 221   1000011111  12455666642      24588999875421 01111


Q ss_pred             CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      .   .+...  ...+.+.++.+++.++..+.|..||+.+.
T Consensus       658 ~---~h~~~--V~~v~f~~~~~lvs~s~D~~ikiWd~~~~  692 (793)
T PLN00181        658 I---GHSKT--VSYVRFVDSSTLVSSSTDNTLKLWDLSMS  692 (793)
T ss_pred             c---CCCCC--EEEEEEeCCCEEEEEECCCEEEEEeCCCC
Confidence            0   11111  11344455666677777778999998753

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=80.93  E-value=21  Score=33.17  Aligned_cols=109  Identities=10%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-C---
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-Q---  187 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~---  187 (316)
                      -.||+.|....+|.+|...+.|-.  |..+....--.+.+  ...++++|+.      ...||.+|+++.+=... .   
T Consensus       146 cDly~~gsg~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~------~g~VEfwDpR~ksrv~~l~~~~  217 (703)
T KOG2321|consen  146 CDLYLVGSGSEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTE------DGVVEFWDPRDKSRVGTLDAAS  217 (703)
T ss_pred             ccEEEeecCcceEEEEcccccccc--ccccccccceeeeecCccceEEeccc------CceEEEecchhhhhheeeeccc
Confidence            445666645689999999988832  22222111111112  2457777763      35588888876542221 1   


Q ss_pred             CCCcccccCccccceeEEEeC-CEEEEEecccceEEEeeCCCCC
Q 040781          188 SMPAVLKDSAASTWLSVAVNS-RQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .++............++.+.+ |....+|...|.++.||+.+.+
T Consensus       218 ~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~  261 (703)
T KOG2321|consen  218 SVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK  261 (703)
T ss_pred             ccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence            111100111111122455556 6667777788889999998764

>PLN00181 protein SPA1-RELATED; Provisional

Probab=80.52  E-value=64  Score=32.08  Aligned_cols=95  Identities=8%  Similarity=0.000  Sum_probs=48.8

Q ss_pred             CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781          121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA  198 (316)
Q Consensus       121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~  198 (316)
                      ..+.+.+||..+++....-..... .-..++..  +..+++.|+.      ...+.+||..++.-  +..+..  ...  
T Consensus       553 ~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p~~~~~L~Sgs~------Dg~v~iWd~~~~~~--~~~~~~--~~~--  619 (793)
T PLN00181        553 FEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSSADPTLLASGSD------DGSVKLWSINQGVS--IGTIKT--KAN--  619 (793)
T ss_pred             CCCeEEEEECCCCeEEEEecCCCC-CEEEEEEcCCCCCEEEEEcC------CCEEEEEECCCCcE--EEEEec--CCC--
Confidence            347899999877654221011110 01122222  3456666653      24588888876431  111101  000  


Q ss_pred             ccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781          199 STWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       199 ~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        ...+..  .++.+.+.|+..+.|..||+.+..
T Consensus       620 --v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~  651 (793)
T PLN00181        620 --ICCVQFPSESGRSLAFGSADHKVYYYDLRNPK  651 (793)
T ss_pred             --eEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence              012222  246777778788899999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	3e-10
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	7e-08
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	7e-04
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	5e-09
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	4e-07
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	2e-08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	9e-08
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	7e-05
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	2e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-08
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	6e-06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-08
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-07
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	2e-05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-04
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	8e-04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	3e-04
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-04

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 59.3 bits (144), Expect = 3e-10
 Identities = 29/175 (16%), Positives = 57/175 (32%), Gaps = 35/175 (20%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL-----SPSKLSFS 127
              +   ++ + + W +I+   +        R   +      ++Y L      P K    
Sbjct: 22  QPQSCRYFNPKDYSWTDIRCPFEK-------RRDAACVFWDNVVYILGGSQLFPIKRMDC 74

Query: 128 FDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRTWEIC 186
           ++ +  +W+    P   R          K+  +GG  +  +  L   E Y   T +W   
Sbjct: 75  YNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGG-SEVGNSALYLFECYDTRTESWHTK 133

Query: 187 QSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVS---------FDPSTKGWS 232
            SM              +   +  +YV     G  VS         +DP+T+ W+
Sbjct: 134 PSML------TQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWT 182

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 23/133 (17%), Positives = 43/133 (32%), Gaps = 18/133 (13%)

Query: 109 RSSHSTLLYTL--SPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDF 166
           R  H   +     S  +    F+P   +W  +  P   R D       + V + GG    
Sbjct: 8   RKKHDYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG---S 64

Query: 167 EDDPLA-VEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVT---EKYSGITV 222
           +  P+  ++ Y+V   +W      P           L+      ++Y +   E  +    
Sbjct: 65  QLFPIKRMDCYNVVKDSWYSKLGPP------TPRDSLAACAAEGKIYTSGGSEVGNSALY 118

Query: 223 S---FDPSTKGWS 232
               +D  T+ W 
Sbjct: 119 LFECYDTRTESWH 131

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 22/138 (15%), Positives = 36/138 (26%), Gaps = 20/138 (14%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL----SPSKLSF-- 126
            L +   YD  +  W E+    +        R +H        ++ +        L    
Sbjct: 167 VLNSCEVYDPATETWTELCPMIEA-------RKNHGLVFVKDKIFAVGGQNGLGGLDNVE 219

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186
            +D     W  V            A VG  V V  G          +  Y+ +T  W   
Sbjct: 220 YYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAG-FQGVGRLGHILEYNTETDKWVAN 278

Query: 187 QSMPAVLKDSAASTWLSV 204
             + A    S     +  
Sbjct: 279 SKVRAFPVTSCLICVVDT 296

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 55.5 bits (134), Expect = 5e-09
 Identities = 39/220 (17%), Positives = 64/220 (29%), Gaps = 50/220 (22%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLY-------TLSPSKLS 125
            L +   YD  S  W E                 H+      L+Y               
Sbjct: 115 CLDSVMCYDRLSFKWGESDPLPYV-------VYGHTVLSHMDLVYVIGGKGSDRKCLNKM 167

Query: 126 FSFDPLHLAWHHVDAP-RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184
             +DP    W  + AP +  R+     +   +++VA G  D      + E+YS+    W 
Sbjct: 168 CVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDTGL-TSSAEVYSITDNKWA 225

Query: 185 ICQSMPAVLKDSAASTWLSVAVNSRQLYV--------------TEKYSGITVSFDPSTKG 230
             ++ P         + LS+      LY                         ++   K 
Sbjct: 226 PFEAFP------QERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279

Query: 231 WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV 270
           W G             + +  TF   RL  + LT  AE++
Sbjct: 280 WEGVLREI-------AYAAGATFLPVRLNVLRLTKMAENL 312

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 20/115 (17%), Positives = 32/115 (27%), Gaps = 14/115 (12%)

Query: 126 FSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDD-PLA-VEMYSVDTRTW 183
             FD L   W  +      R    +    + + V GG    + +  L  V  Y   +  W
Sbjct: 70  LQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW 129

Query: 184 EICQSMPAVLKDSAASTWLSVAVNSRQLYV------TEKYSGITVSFDPSTKGWS 232
                +P            +V  +   +YV        K       +DP    W 
Sbjct: 130 GESDPLP------YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWK 178

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 36/217 (16%), Positives = 63/217 (29%), Gaps = 46/217 (21%)

Query: 80  LTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL----------SPSK 123
           L+   AY+  +  W+ + +   P       RS  +      LLY +          + S 
Sbjct: 38  LSYLEAYNPSNGTWLRLADLQVP-------RSGLAGCVVGGLLYAVGGRNNSPDGNTDSS 90

Query: 124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRT 182
               ++P+   W       V R    V ++   +   GG           VE Y  +   
Sbjct: 91  ALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGG-SH-GCIHHNSVERYEPERDE 148

Query: 183 WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITV-----SFDPSTKGWS--GPF 235
           W +   M              VAV +R LY    + G         + P    W      
Sbjct: 149 WHLVAPMLTRRIGVG------VAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAM 202

Query: 236 HLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKS 272
           +  +          V    ++ + A G     + + S
Sbjct: 203 NTIRSGA------GVCVL-HNCIYAAGGYDGQDQLNS 232

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 51.6 bits (124), Expect = 9e-08
 Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 42/204 (20%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL------SPSKLSF 126
             +    Y+  ++ W      + P       R+          +Y +             
Sbjct: 88  DSSALDCYNPMTNQWSPCAPMSVP-------RNRIGVGVIDGHIYAVGGSHGCIHHNSVE 140

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRTWEI 185
            ++P    WH V      R    VA++   +   GG  D   + L   E Y  +   W +
Sbjct: 141 RYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGG-FD-GTNRLNSAECYYPERNEWRM 198

Query: 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITV-----SFDPSTKGWS--GPFHLR 238
             +M          +   V V    +Y    Y G         +D  T+ W+   P   R
Sbjct: 199 ITAMN------TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR 252

Query: 239 QFDHEKKVFYSVITFANDRLIAVG 262
           +           IT    R+  +G
Sbjct: 253 RSAL-------GITVHQGRIYVLG 269

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 26/140 (18%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL----SPSKLS--F 126
            L +A  Y    + W  I   N         RS          +Y         +L+   
Sbjct: 182 RLNSAECYYPERNEWRMITAMNTI-------RSGAGVCVLHNCIYAAGGYDGQDQLNSVE 234

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC 186
            +D     W  V   +  R+   + +   ++ V GG  D      +VE Y  DT TW   
Sbjct: 235 RYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGG-YDGHTFLDSVECYDPDTDTWSEV 293

Query: 187 QSMPAVLKDSAASTWLSVAV 206
             M       +  + + VAV
Sbjct: 294 TRMT------SGRSGVGVAV 307

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 53.4 bits (129), Expect = 2e-08
 Identities = 36/206 (17%), Positives = 63/206 (30%), Gaps = 44/206 (21%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL------SPSKLSF 126
            + +   YD +   W ++             R          L++ +         +   
Sbjct: 28  AIRSVECYDFKEERWHQVAELPSR-------RCRAGMVYMAGLVFAVGGFNGSLRVRTVD 80

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRTWEI 185
           S+DP+   W  V   R  R+    A++   +   GG  D     L+ VE Y++ +  W  
Sbjct: 81  SYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGG-FD-GSTGLSSVEAYNIKSNEWFH 138

Query: 186 CQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITV-------SFDPSTKGWS--GPFH 236
              M            + V V    LY    Y   +         ++ +T  W+      
Sbjct: 139 VAPMNTRRSS------VGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMS 192

Query: 237 LRQFDHEKKVFYSVITFANDRLIAVG 262
            R+          V    N+ L AVG
Sbjct: 193 TRRSGA------GVGVL-NNLLYAVG 211

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 35/173 (20%), Positives = 57/173 (32%), Gaps = 33/173 (19%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLY------TLSPSKLS- 125
            L++  AY+ +S+ W  +   N         RSS        LLY        S   LS 
Sbjct: 122 GLSSVEAYNIKSNEWFHVAPMNTR-------RSSVGVGVVGGLLYAVGGYDVASRQCLST 174

Query: 126 -FSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184
              ++     W ++      R+   V ++ + +   GG  D      +VE+Y   T  W 
Sbjct: 175 VECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGG-HDGPLVRKSVEVYDPTTNAWR 233

Query: 185 ICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITV-----SFDPSTKGWS 232
               M              V   +  LYV     G         ++P+T  W+
Sbjct: 234 QVADMN------MCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWT 280

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 20/126 (15%), Positives = 33/126 (26%), Gaps = 23/126 (18%)

Query: 145 RTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRTWEICQSMPAVLKDSAASTWLS 203
           RT     +   K++V  G        +  VE Y      W     +P      +      
Sbjct: 5   RTRLRTPMNLPKLMVVVGGQA--PKAIRSVECYDFKEERWHQVAELP------SRRCRAG 56

Query: 204 VAVNSRQLYVT-----EKYSGITVSFDPSTKGWS--GPFHLRQFDHEKKVFYSVITFAND 256
           +   +  ++               S+DP    W+       R+               N 
Sbjct: 57  MVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTL-------GAAVLNG 109

Query: 257 RLIAVG 262
            L AVG
Sbjct: 110 LLYAVG 115

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 30/208 (14%), Positives = 55/208 (26%), Gaps = 44/208 (21%)

Query: 81  TTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHST-----LLYTL------------SPSK 123
           T A AYD   +        +        R+  S       +Y +                
Sbjct: 24  TAAVAYDPMENECYLTALAEQIP-----RNHSSIVTQQNQVYVVGGLYVDEENKDQPLQS 78

Query: 124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRT 182
             F  D +   W  +      R    +  V DK+ V  G     +  L  V  Y      
Sbjct: 79  YFFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAK 138

Query: 183 WEICQSMPAVLKDSAASTWLSVAVNSRQLYVT------EKYSGITVSFDPSTKGWSG--P 234
           W   +++P            +V  ++  +Y        +K +     ++P    W    P
Sbjct: 139 WSEVKNLP------IKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP 192

Query: 235 FHLRQFDHEKKVFYSVITFANDRLIAVG 262
               +          V      +++  G
Sbjct: 193 MKTPRSMF------GVAIH-KGKIVIAG 213

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 43/192 (22%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLY-------TLSPSKLS 125
            L +   YD  +  W E+KN              H+      ++Y           +   
Sbjct: 125 SLDSVLCYDPVAAKWSEVKNLPIK-------VYGHNVISHNGMIYCLGGKTDDKKCTNRV 177

Query: 126 FSFDPLHLAWHHVDAP-RVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE 184
           F ++P    W  + AP +  R+   VA+   K+V+AGG    +    +VE + + T  WE
Sbjct: 178 FIYNPKKGDWKDL-APMKTPRSMFGVAIHKGKIVIAGG-VTEDGLSASVEAFDLKTNKWE 235

Query: 185 ICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVS--------------FDPSTKG 230
           +    P         + +S+   +  LY    ++ I +               ++   K 
Sbjct: 236 VMTEFP------QERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289

Query: 231 WSGPFHLRQFDH 242
           W+G     ++  
Sbjct: 290 WAGMLKEIRYAS 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 36/206 (17%), Positives = 64/206 (31%), Gaps = 43/206 (20%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL------SPSKLSF 126
            +     YD ++  W  + +  +        R   ++      +Y +      S      
Sbjct: 29  PIDVVEKYDPKTQEWSFLPSITRK-------RRYVASVSLHDRIYVIGGYDGRSRLSSVE 81

Query: 127 SFDPLH---LAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTW 183
             D        W+ V    V R       +GD + V+GG  D      ++E Y  +   W
Sbjct: 82  CLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGG-FDGSRRHTSMERYDPNIDQW 140

Query: 184 EICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITV-----SFDPSTKGWS--GPFH 236
            +   M    +         + V S  +Y    Y G+ +      +DP T  W+   P  
Sbjct: 141 SMLGDMQTAREG------AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA 194

Query: 237 LRQFDHEKKVFYSVITFANDRLIAVG 262
            ++          V    ND +  VG
Sbjct: 195 TKRSGA------GVALL-NDHIYVVG 213

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 22/138 (15%), Positives = 44/138 (31%), Gaps = 30/138 (21%)

Query: 79  YLTTAHAYDARSHVWIEIKN-NQPSSFDFLLRSSHST-----LLYTL----SPSKLS--F 126
            L +   YD  +  W  +             RS          +Y +      + LS   
Sbjct: 173 ILNSVEKYDPHTGHWTNVTPMATK-------RSGAGVALLNDHIYVVGGFDGTAHLSSVE 225

Query: 127 SFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VEMYSVDTRTWEI 185
           +++    +W  V +    R      ++  ++    G     +  L+ +E Y     +WE+
Sbjct: 226 AYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAG--YDGNSLLSSIECYDPIIDSWEV 283

Query: 186 CQSMP--------AVLKD 195
             SM          VL++
Sbjct: 284 VTSMGTQRCDAGVCVLRE 301

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 13/120 (10%), Positives = 43/120 (35%), Gaps = 10/120 (8%)

Query: 116 LYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLA-VE 174
           +  LS          + ++   V   R+  T   ++   +++++ GG        L+   
Sbjct: 414 ILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKA-PHQGLSDNW 471

Query: 175 MYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVT--EKYSGITVSFDPSTKGWS 232
           ++ + TR W + +S+       +A      ++    + +          + ++ + + + 
Sbjct: 472 IFDMKTREWSMIKSLSHTRFRHSA-----CSLPDGNVLILGGVTEGPAMLLYNVTEEIFK 526

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 40.1 bits (93), Expect = 8e-04
 Identities = 13/158 (8%), Positives = 40/158 (25%), Gaps = 21/158 (13%)

Query: 65  WLLLHTQSQRTMAPYLTTAHAYDARSHVWI-----EIKNNQPSSFDFLLRSSHSTLLYTL 119
           +  +  + +      ++    +D  S   I      +     S    + +         +
Sbjct: 525 FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPI 584

Query: 120 SPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVD 179
           +  K              +             +   K+++ GG            + S+D
Sbjct: 585 TVIK-KLQHPLFQRYGSQI-----------KYITPRKLLIVGGTSPSGLFDRTNSIISLD 632

Query: 180 TRTWEICQSMPAVLKDSAASTWL----SVAVNSRQLYV 213
             +  +     +       S  L     V+ +   +++
Sbjct: 633 PLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHI 670

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 25/164 (15%), Positives = 44/164 (26%), Gaps = 37/164 (22%)

Query: 86  YDARSHVWIEIKNNQPSSFDFLLRSSHST-----LLY-----------TLSPSKLSFSFD 129
             A+   W  +     ++F    R   ++      LY                     ++
Sbjct: 38  TQAKDKKWTAL-----AAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYN 92

Query: 130 PLHLAWHHV-DAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS 188
           P   +W  +     +     V  +   K  V GG  +        E  +   +       
Sbjct: 93  PKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGG-VNQNIFNGYFEDLNEAGKDSTAIDK 151

Query: 189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWS 232
           + A   D  A         ++ L            FDPST+ WS
Sbjct: 152 INAHYFDKKA----EDYFFNKFLLS----------FDPSTQQWS 181

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 34/232 (14%), Positives = 56/232 (24%), Gaps = 41/232 (17%)

Query: 79  YLTTAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHV 138
           +       +        I                    Y  +   LSF  DP    W + 
Sbjct: 132 FNGYFEDLNEAGKDSTAIDKINAH------YFDKKAEDYFFNKFLLSF--DPSTQQWSYA 183

Query: 139 -DAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSA 197
            ++P        V   GDK  +  G         AV          +  +  P    D  
Sbjct: 184 GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243

Query: 198 ASTWLSVAVNSRQLYV-----------------TEKYSGITVS-----FDPSTKGWSGPF 235
           A       +++  L                      + G+  S            W    
Sbjct: 244 A--GGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG 301

Query: 236 HLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSL-KIWQVNIKGGSLE 286
            L Q        Y V    N+ L+ +G  GE    K++     + +K   + 
Sbjct: 302 ELSQ-----GRAYGVSLPWNNSLLIIG--GETAGGKAVTDSVLITVKDNKVT 346

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.93
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.92
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.92
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.92
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.92
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.92
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.92
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.91
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.91
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.9
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.88
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.86
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.82
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.75
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.73
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	99.63
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.16
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.86
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.67
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.52
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.52
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.85
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.72
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.3
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	96.69
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.35
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.2
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.12
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.78
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.61
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.51
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.36
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.09
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	94.99
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	94.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	94.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.12
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.04
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	94.01
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	93.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	93.82
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	93.75
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.67
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	93.62
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	93.47
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	93.36
3jrp_A	379	Fusion protein of protein transport protein SEC13	92.76
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.68
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.43
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	92.31
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	92.19
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	92.12
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	92.02
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	91.73
3jro_A	753	Fusion protein of protein transport protein SEC13	91.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	91.58
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	91.53
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	91.52
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	91.44
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	91.21
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	91.18
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	91.01
3v9f_A	781	Two-component system sensor histidine kinase/RESP	90.96
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	90.93
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	90.9
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	90.9
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	90.86
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.75
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	90.68
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	90.54
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	90.52
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	90.41
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	90.37
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	90.15
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	89.9
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	89.85
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	89.71
3ow8_A	321	WD repeat-containing protein 61; structural genomi	89.41
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	89.38
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	89.15
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	89.08
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.91
3ow8_A	321	WD repeat-containing protein 61; structural genomi	88.88
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	88.77
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	88.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	88.62
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	88.33
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	88.14
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	88.07
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	88.07
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	87.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	87.91
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	87.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	87.79
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	87.75
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	87.63
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	87.47
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	87.32
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	87.32
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	87.3
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	87.12
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	87.09
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	87.06
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	86.87
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	86.72
3jro_A	753	Fusion protein of protein transport protein SEC13	86.64
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	86.62
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	86.6
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	86.44
3v65_B	386	Low-density lipoprotein receptor-related protein;	86.42
2pm7_B	297	Protein transport protein SEC13, protein transport	86.33
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	86.29
2pm7_B	297	Protein transport protein SEC13, protein transport	86.09
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.03
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	85.95
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.52
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	85.45
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	85.37
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	85.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	85.24
3v9f_A	781	Two-component system sensor histidine kinase/RESP	85.23
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	85.18
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	85.17
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	85.11
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	84.79
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	84.73
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	84.59
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	84.49
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	84.48
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	84.23
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	84.18
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	83.97
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	83.74
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	83.7
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	83.61
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	83.29
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	83.23
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	83.18
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	83.01
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	82.96
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	82.95
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	82.9
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	82.75
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	82.72
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	82.72
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.61
4a2l_A	795	BT_4663, two-component system sensor histidine kin	82.4
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	81.43
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	81.38
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	81.0
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	80.73
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	80.41
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	80.1

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.93  E-value=7.9e-24  Score=181.65  Aligned_cols=210  Identities=16%  Similarity=0.214  Sum_probs=164.4

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC-----ceeeeecCCCCceee
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS-----KLSFSFDPLHLAWHH  137 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~-----~~~~v~np~t~~w~~  137 (316)
                      ..+++++...  .   ...++.||+..++|..++  +++ ++.....+..++.||++||.     +++++|||.+++|..
T Consensus        12 ~~l~~~GG~~--~---~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~   84 (306)
T 3ii7_A           12 DYRIALFGGS--Q---PQSCRYFNPKDYSWTDIR--CPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYS   84 (306)
T ss_dssp             CEEEEEECCS--S---TTSEEEEETTTTEEEECC--CCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEE
T ss_pred             ceEEEEeCCC--C---CceEEEecCCCCCEecCC--CCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEE
Confidence            4667777655  2   456889999999999996  433 22333444567899999983     689999999999999


Q ss_pred             cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc
Q 040781          138 VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY  217 (316)
Q Consensus       138 lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~  217 (316)
                      +++++.+|..++.+.++++||++||..........+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.
T Consensus        85 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~  158 (306)
T 3ii7_A           85 KLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT--QRCSH----GMVEANGLIYVCGGS  158 (306)
T ss_dssp             EECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEECCE
T ss_pred             CCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC--Cccee----EEEEECCEEEEECCC
Confidence            999999999999999999999999986443466789999999999999988887  67666    778889999999983


Q ss_pred             ---------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhh
Q 040781          218 ---------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEEL  288 (316)
Q Consensus       218 ---------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W  288 (316)
                               .+.+++||+.+++|+.+..+|.+     ...+.++..+++|+++||.......  -.+|.+|  ..+ ++|
T Consensus       159 ~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~yd--~~~-~~W  228 (306)
T 3ii7_A          159 LGNNVSGRVLNSCEVYDPATETWTELCPMIEA-----RKNHGLVFVKDKIFAVGGQNGLGGL--DNVEYYD--IKL-NEW  228 (306)
T ss_dssp             ESCTTTCEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCEETTEEB--CCEEEEE--TTT-TEE
T ss_pred             CCCCCcccccceEEEeCCCCCeEEECCCccch-----hhcceEEEECCEEEEEeCCCCCCCC--ceEEEee--CCC-CcE
Confidence                     56789999999999998866655     2344556679999999986544222  3456666  333 349


Q ss_pred             hhcCCCcH
Q 040781          289 KEIGEMPK  296 (316)
Q Consensus       289 ~~i~~~p~  296 (316)
                      +++..||.
T Consensus       229 ~~~~~~p~  236 (306)
T 3ii7_A          229 KMVSPMPW  236 (306)
T ss_dssp             EECCCCSC
T ss_pred             EECCCCCC
Confidence            99998885

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.92  E-value=1.6e-23  Score=180.04  Aligned_cols=240  Identities=15%  Similarity=0.168  Sum_probs=175.8

Q ss_pred             hhhHHHhhhhHHHHHHhhccccccC----CCCCeEEEEecC----CCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccc
Q 040781           36 IDLASACYVSRSWNRAVFSSLRRVN----KIKPWLLLHTQS----QRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDF  106 (316)
Q Consensus        36 ~~l~r~r~VcK~W~~li~s~~~~~~----~~~~~l~~~~~~----~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~  106 (316)
                      .++..+....+.|..+..-+..+..    .....+++++..    .  .....+.++.||+..++|..++  +++. ...
T Consensus        39 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~  114 (308)
T 1zgk_A           39 SYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD--GNTDSSALDCYNPMTNQWSPCA--PMSVPRNR  114 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETT--EEEECCCEEEEETTTTEEEECC--CCSSCCBT
T ss_pred             ceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCC--CCeecceEEEECCCCCeEeECC--CCCcCccc
Confidence            4455555666777766433311111    123455666554    2  2223456889999999999996  4432 223


Q ss_pred             eeeeecCCEEEEEcC------CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781          107 LLRSSHSTLLYTLSP------SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDT  180 (316)
Q Consensus       107 ~~~~s~~~~l~~~gg------~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t  180 (316)
                      ...+..++.||++||      .+++++|||.+++|..+++++.+|..++.+.++.+||++||..... ....+++||+.+
T Consensus       115 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~  193 (308)
T 1zgk_A          115 IGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPER  193 (308)
T ss_dssp             CEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTT
T ss_pred             cEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCC
Confidence            344445799999998      2689999999999999999999999999999999999999976543 367799999999


Q ss_pred             CCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeC
Q 040781          181 RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAN  255 (316)
Q Consensus       181 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~  255 (316)
                      ++|+.+.++|.  ++..+    ++++.++.+|++||.     .+.++.||+.+++|+.+..+|.+    + ....++..+
T Consensus       194 ~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~  262 (308)
T 1zgk_A          194 NEWRMITAMNT--IRSGA----GVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR----R-SALGITVHQ  262 (308)
T ss_dssp             TEEEECCCCSS--CCBSC----EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC----C-BSCEEEEET
T ss_pred             CeEeeCCCCCC--ccccc----eEEEECCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCC----c-cceEEEEEC
Confidence            99999988887  67666    778889999999984     35799999999999999866665    2 234455679


Q ss_pred             CEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          256 DRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       256 g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      ++|+++||.......  -++|.+|  ..+ ++|+++..||.
T Consensus       263 ~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~~~~~p~  298 (308)
T 1zgk_A          263 GRIYVLGGYDGHTFL--DSVECYD--PDT-DTWSEVTRMTS  298 (308)
T ss_dssp             TEEEEECCBCSSCBC--CEEEEEE--TTT-TEEEEEEECSS
T ss_pred             CEEEEEcCcCCCccc--ceEEEEc--CCC-CEEeecCCCCC
Confidence            999999986554333  3556666  333 34999988875

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.92  E-value=1.7e-23  Score=179.27  Aligned_cols=213  Identities=18%  Similarity=0.229  Sum_probs=162.2

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCcee
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWH  136 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~  136 (316)
                      ..+++++...  .......++.||+..++|..++  +++. ......+..++.||++||.      +++++|||.+++|.
T Consensus        62 ~~lyv~GG~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~  137 (302)
T 2xn4_A           62 GLVFAVGGFN--GSLRVRTVDSYDPVKDQWTSVA--NMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWF  137 (302)
T ss_dssp             TEEEEESCBC--SSSBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEE
T ss_pred             CEEEEEeCcC--CCccccceEEECCCCCceeeCC--CCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEe
Confidence            4466666654  3334566899999999999996  4432 2233344457899999973      57999999999999


Q ss_pred             ecCCCCCCCCCCEEEEECCEEEEEcCcCCCC-CCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEe
Q 040781          137 HVDAPRVWRTDPVVALVGDKVVVAGGACDFE-DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTE  215 (316)
Q Consensus       137 ~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~-~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~  215 (316)
                      .+++++.+|..++.+.+++++|++||..... .....+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++|
T Consensus       138 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~G  211 (302)
T 2xn4_A          138 HVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST--RRSGA----GVGVLNNLLYAVG  211 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEEC
T ss_pred             ecCCCCCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc--ccccc----cEEEECCEEEEEC
Confidence            9999999999999999999999999975442 235679999999999999988877  67666    7888899999999


Q ss_pred             cc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh
Q 040781          216 KY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE  290 (316)
Q Consensus       216 ~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~  290 (316)
                      |.     .+.++.||+++++|+.+..+|.+    + ..+.++..+|+|+++||.......  -++|.+|  ..+ ++|++
T Consensus       212 G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~----r-~~~~~~~~~~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~  281 (302)
T 2xn4_A          212 GHDGPLVRKSVEVYDPTTNAWRQVADMNMC----R-RNAGVCAVNGLLYVVGGDDGSCNL--ASVEYYN--PTT-DKWTV  281 (302)
T ss_dssp             CBSSSSBCCCEEEEETTTTEEEEECCCSSC----C-BSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-TEEEE
T ss_pred             CCCCCcccceEEEEeCCCCCEeeCCCCCCc----c-ccCeEEEECCEEEEECCcCCCccc--ccEEEEc--CCC-CeEEE
Confidence            84     35789999999999998876665    2 234455679999999987554333  3456665  323 34999


Q ss_pred             cC-CCcH
Q 040781          291 IG-EMPK  296 (316)
Q Consensus       291 i~-~~p~  296 (316)
                      +. .||.
T Consensus       282 ~~~~~~~  288 (302)
T 2xn4_A          282 VSSCMST  288 (302)
T ss_dssp             CSSCCSS
T ss_pred             CCcccCc
Confidence            86 6764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.92  E-value=3.9e-23  Score=177.56  Aligned_cols=213  Identities=15%  Similarity=0.225  Sum_probs=163.1

Q ss_pred             CCeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC----------ceeeeecCC
Q 040781           63 KPWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS----------KLSFSFDPL  131 (316)
Q Consensus        63 ~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~----------~~~~v~np~  131 (316)
                      ...+++++...  . .....++.||+..++|..++  +++. ......+..++.||++||.          +++++|||.
T Consensus        24 ~~~i~v~GG~~--~-~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           24 GRLIYTAGGYF--R-QSLSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCEEEECCBS--S-SBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCEEEEEeCcC--C-CCcceEEEEcCCCCeEeECC--CCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            34566666542  1 24556889999999999995  4332 2233334557999999985          478999999


Q ss_pred             CCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEE
Q 040781          132 HLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQL  211 (316)
Q Consensus       132 t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~  211 (316)
                      +++|..+++++.+|..++++.++++||++||..... ....+++||+.+++|+.+.++|.  ++..+    ++++.++.+
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~i  171 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGV----GVAVLNRLL  171 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEE
T ss_pred             CCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccce----EEEEECCEE
Confidence            999999999999999999999999999999975432 45679999999999999998887  67666    778889999


Q ss_pred             EEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchh
Q 040781          212 YVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLE  286 (316)
Q Consensus       212 y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~  286 (316)
                      |++||.     .+.++.||+.+++|..+..+|.+    + ....++..+++|+++||.......  -++|.+|  ..+ +
T Consensus       172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~iyv~GG~~~~~~~--~~v~~yd--~~~-~  241 (308)
T 1zgk_A          172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI----R-SGAGVCVLHNCIYAAGGYDGQDQL--NSVERYD--VET-E  241 (308)
T ss_dssp             EEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC----C-BSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-T
T ss_pred             EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc----c-ccceEEEECCEEEEEeCCCCCCcc--ceEEEEe--CCC-C
Confidence            999984     35789999999999999877665    2 233455669999999987654333  4456666  333 3


Q ss_pred             hhhhcCCCcHH
Q 040781          287 ELKEIGEMPKA  297 (316)
Q Consensus       287 ~W~~i~~~p~~  297 (316)
                      +|+++..||..
T Consensus       242 ~W~~~~~~p~~  252 (308)
T 1zgk_A          242 TWTFVAPMKHR  252 (308)
T ss_dssp             EEEECCCCSSC
T ss_pred             cEEECCCCCCC
Confidence            49999888853

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.92  E-value=2.5e-23  Score=178.06  Aligned_cols=239  Identities=14%  Similarity=0.167  Sum_probs=174.2

Q ss_pred             hhHHHhhhhHHHHHHhhcccccc----CCCCCeEEEEecCCCCCCCCCCceEEeeCCCCc---eeEccCCCCCC-cccee
Q 040781           37 DLASACYVSRSWNRAVFSSLRRV----NKIKPWLLLHTQSQRTMAPYLTTAHAYDARSHV---WIEIKNNQPSS-FDFLL  108 (316)
Q Consensus        37 ~l~r~r~VcK~W~~li~s~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~---w~~~~~~~~~~-~~~~~  108 (316)
                      ++..+-...+.|..+..-+..+.    ......+++++...  .....+.++.||+..++   |..++  +++. .....
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~--~~~~~~~~~~~d~~~~~~~~W~~~~--~~p~~r~~~~  107 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYD--GRSRLSSVECLDYTADEDGVWYSVA--PMNVRRGLAG  107 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBC--SSCBCCCEEEEETTCCTTCCCEEEC--CCSSCCBSCE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCC--CCccCceEEEEECCCCCCCeeEECC--CCCCCcccee
Confidence            34444445566655543221111    11234566666654  33455678999999999   99996  4432 22334


Q ss_pred             eeecCCEEEEEcCC------ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC
Q 040781          109 RSSHSTLLYTLSPS------KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT  182 (316)
Q Consensus       109 ~~s~~~~l~~~gg~------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~  182 (316)
                      .+..++.||++||.      +++++|||.+++|..+++++.+|..++.+..+.+||++||..... ....+++||+.+++
T Consensus       108 ~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~  186 (301)
T 2vpj_A          108 ATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGH  186 (301)
T ss_dssp             EEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTE
T ss_pred             EEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCc
Confidence            44457999999982      689999999999999999999999999999999999999976543 56779999999999


Q ss_pred             eeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCE
Q 040781          183 WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDR  257 (316)
Q Consensus       183 W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~  257 (316)
                      |+.+.++|.  ++..+    ++++.++.+|++||.     .+.++.||+.+++|+.+..+|.+    + ..+.++..+|+
T Consensus       187 W~~~~~~p~--~r~~~----~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~  255 (301)
T 2vpj_A          187 WTNVTPMAT--KRSGA----GVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTP----R-CYVGATVLRGR  255 (301)
T ss_dssp             EEEECCCSS--CCBSC----EEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSC----C-BSCEEEEETTE
T ss_pred             EEeCCCCCc--ccccc----eEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCc----c-cceeEEEECCE
Confidence            999988877  66666    788889999999984     45789999999999998876665    2 23345566999


Q ss_pred             EEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          258 LIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       258 L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      |+++||.......  -.+|.+|  ..+ ++|+++..||.
T Consensus       256 i~v~GG~~~~~~~--~~v~~yd--~~~-~~W~~~~~~~~  289 (301)
T 2vpj_A          256 LYAIAGYDGNSLL--SSIECYD--PII-DSWEVVTSMGT  289 (301)
T ss_dssp             EEEECCBCSSSBE--EEEEEEE--TTT-TEEEEEEEEEE
T ss_pred             EEEEcCcCCCccc--ccEEEEc--CCC-CeEEEcCCCCc
Confidence            9999986544322  4567776  333 34999988875

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.92  E-value=1.8e-23  Score=180.14  Aligned_cols=198  Identities=14%  Similarity=0.089  Sum_probs=154.9

Q ss_pred             eEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCCE
Q 040781           83 AHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDPV  149 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~~  149 (316)
                      ++.||+..++|...+. |.+ +......+..++.||++||.            +.+++|||.+++|..+++++.+|..++
T Consensus        15 ~~~yd~~~~~W~~~~~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~   93 (315)
T 4asc_A           15 AVAYDPAANECYCASL-SSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFG   93 (315)
T ss_dssp             EEEEETTTTEEEEEEC-CCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCE
T ss_pred             eEEECCCCCeEecCCC-CCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhcee
Confidence            7899999999986432 332 23333445567899999882            348999999999999999999999999


Q ss_pred             EEEECCEEEEEcCcCC--CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceE
Q 040781          150 VALVGDKVVVAGGACD--FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGIT  221 (316)
Q Consensus       150 ~~~~~~~v~~~gg~~~--~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i  221 (316)
                      ++.++.++|++||...  .......+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.      .+.+
T Consensus        94 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~  167 (315)
T 4asc_A           94 LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGH----TVLSHMDLVYVIGGKGSDRKCLNKM  167 (315)
T ss_dssp             EEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEEEEECCBCTTSCBCCCE
T ss_pred             EEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccce----eEEEECCEEEEEeCCCCCCcccceE
Confidence            9999999999999642  23466789999999999999998888  77777    788899999999985      3578


Q ss_pred             EEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          222 VSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       222 ~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      +.||+.+++|+.++.+|.+     ...+..+..+++|+++||......  .-.+|.+|  ..+ ++|+++..||..
T Consensus       168 ~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~yd--~~~-~~W~~~~~~p~~  233 (315)
T 4asc_A          168 CVYDPKKFEWKELAPMQTA-----RSLFGATVHDGRIIVAAGVTDTGL--TSSAEVYS--ITD-NKWAPFEAFPQE  233 (315)
T ss_dssp             EEEETTTTEEEECCCCSSC-----CBSCEEEEETTEEEEEEEECSSSE--EEEEEEEE--TTT-TEEEEECCCSSC
T ss_pred             EEEeCCCCeEEECCCCCCc-----hhceEEEEECCEEEEEeccCCCCc--cceEEEEE--CCC-CeEEECCCCCCc
Confidence            9999999999999877665     233445567999999998765432  24567777  433 349999988854

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.92  E-value=3.3e-23  Score=177.80  Aligned_cols=212  Identities=13%  Similarity=0.110  Sum_probs=162.8

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC-------ceeeeecCCCCce
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS-------KLSFSFDPLHLAW  135 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~-------~~~~v~np~t~~w  135 (316)
                      ..+++++...   ......++.||+..++|..++  +++. ......+..++.||++||.       +++++|||.+++|
T Consensus        56 ~~lyv~GG~~---~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           56 NVVYILGGSQ---LFPIKRMDCYNVVKDSWYSKL--GPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             TEEEEECCBS---SSBCCEEEEEETTTTEEEEEE--CCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             CEEEEEeCCC---CCCcceEEEEeCCCCeEEECC--CCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            3455665543   224566889999999999986  4432 2233444567999999983       5799999999999


Q ss_pred             eecCCCCCCCCCCEEEEECCEEEEEcCcCCCCC---CCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEE
Q 040781          136 HHVDAPRVWRTDPVVALVGDKVVVAGGACDFED---DPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLY  212 (316)
Q Consensus       136 ~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~---~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y  212 (316)
                      ..+++++.+|..++.+..++++|++||......   ....+++||+.+++|+.+.++|.  ++..+    ++++.++.+|
T Consensus       131 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~i~  204 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE--ARKNH----GLVFVKDKIF  204 (306)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEE
T ss_pred             EeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc--hhhcc----eEEEECCEEE
Confidence            999999999999999999999999999755432   16789999999999999998887  77766    7888899999


Q ss_pred             EEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhh
Q 040781          213 VTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEE  287 (316)
Q Consensus       213 ~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~  287 (316)
                      ++||.     .+.+.+||+.+++|+.+..+|.+    + ....++..+++|+++||.......  -++|.+|  ... ++
T Consensus       205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~~~~~~~i~v~GG~~~~~~~--~~~~~yd--~~~-~~  274 (306)
T 3ii7_A          205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK----G-VTVKCAAVGSIVYVLAGFQGVGRL--GHILEYN--TET-DK  274 (306)
T ss_dssp             EECCEETTEEBCCEEEEETTTTEEEECCCCSCC----B-SCCEEEEETTEEEEEECBCSSSBC--CEEEEEE--TTT-TE
T ss_pred             EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC----c-cceeEEEECCEEEEEeCcCCCeee--eeEEEEc--CCC-Ce
Confidence            99984     35789999999999999877665    2 234455669999999987654333  3567777  333 34


Q ss_pred             hhhcCCCcH
Q 040781          288 LKEIGEMPK  296 (316)
Q Consensus       288 W~~i~~~p~  296 (316)
                      |+++..||.
T Consensus       275 W~~~~~~~~  283 (306)
T 3ii7_A          275 WVANSKVRA  283 (306)
T ss_dssp             EEEEEEEEC
T ss_pred             EEeCCCccc
Confidence            999988773

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.92  E-value=2.9e-23  Score=177.79  Aligned_cols=211  Identities=16%  Similarity=0.214  Sum_probs=162.5

Q ss_pred             eEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCceee
Q 040781           65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLAWHH  137 (316)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~w~~  137 (316)
                      .+++++...  . .....+++||+..++|..++  +++. ......+..++.||++||.      +++++|||.+++|..
T Consensus        17 ~i~v~GG~~--~-~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~   91 (302)
T 2xn4_A           17 LMVVVGGQA--P-KAIRSVECYDFKEERWHQVA--ELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS   91 (302)
T ss_dssp             EEEEECCBS--S-SBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             EEEEECCCC--C-CCCCcEEEEcCcCCcEeEcc--cCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceee
Confidence            566666544  2 24456889999999999985  4432 2223334467999999983      579999999999999


Q ss_pred             cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc
Q 040781          138 VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY  217 (316)
Q Consensus       138 lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~  217 (316)
                      +++++.+|..++++.+++++|++||..... ....+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.
T Consensus        92 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~  164 (302)
T 2xn4_A           92 VANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSV----GVGVVGGLLYAVGGY  164 (302)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEECCE
T ss_pred             CCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCc----eEEEECCEEEEEeCC
Confidence            999999999999999999999999975442 45679999999999999998887  67766    788889999999983


Q ss_pred             -------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhh
Q 040781          218 -------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKE  290 (316)
Q Consensus       218 -------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~  290 (316)
                             .+.++.||+.+++|+.+..+|.+     ...+.++..+++|+++||.......  -++|.+|  ..+ ++|++
T Consensus       165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~~--~~~~~yd--~~~-~~W~~  234 (302)
T 2xn4_A          165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-----RSGAGVGVLNNLLYAVGGHDGPLVR--KSVEVYD--PTT-NAWRQ  234 (302)
T ss_dssp             ETTTTEECCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCBSSSSBC--CCEEEEE--TTT-TEEEE
T ss_pred             CCCCCccccEEEEEeCCCCcEEECCCCccc-----cccccEEEECCEEEEECCCCCCccc--ceEEEEe--CCC-CCEee
Confidence                   35689999999999998867665     2334556679999999987543322  3456776  333 34999


Q ss_pred             cCCCcHH
Q 040781          291 IGEMPKA  297 (316)
Q Consensus       291 i~~~p~~  297 (316)
                      +..||..
T Consensus       235 ~~~~~~~  241 (302)
T 2xn4_A          235 VADMNMC  241 (302)
T ss_dssp             ECCCSSC
T ss_pred             CCCCCCc
Confidence            9988853

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.92  E-value=4.2e-23  Score=176.69  Aligned_cols=213  Identities=17%  Similarity=0.238  Sum_probs=163.5

Q ss_pred             CeEEEEec-CCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC------ceeeeecCCCCc-
Q 040781           64 PWLLLHTQ-SQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS------KLSFSFDPLHLA-  134 (316)
Q Consensus        64 ~~l~~~~~-~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~------~~~~v~np~t~~-  134 (316)
                      ..+++++. ..  .......++.||+..++|..++  +++. ......+..++.||++||.      +++++||+.+++ 
T Consensus        15 ~~i~~~GG~~~--~~~~~~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           15 EVLLVVGGFGS--QQSPIDVVEKYDPKTQEWSFLP--SITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             EEEEEECCEET--TTEECCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CEEEEEeCccC--CCcceeEEEEEcCCCCeEEeCC--CCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            34666666 33  2234566889999999999986  3332 2233444567899999983      579999999999 


Q ss_pred             --eeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEE
Q 040781          135 --WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLY  212 (316)
Q Consensus       135 --w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y  212 (316)
                        |..+++++.+|..++++..++++|++||..... ....+++||+.+++|+.+.++|.  ++..+    ++++.++.+|
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iy  163 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQT--AREGA----GLVVASGVIY  163 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSS--CCBSC----EEEEETTEEE
T ss_pred             CeeEECCCCCCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCC--Ccccc----eEEEECCEEE
Confidence              999999999999999999999999999976543 46789999999999999988877  66666    7788899999


Q ss_pred             EEecc-----cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhh
Q 040781          213 VTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEE  287 (316)
Q Consensus       213 ~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~  287 (316)
                      ++||.     .+.+.+||+.+++|+.+..+|.+     ...+.++..+++|+++||.......  -++|.+|  ..+ ++
T Consensus       164 v~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-----r~~~~~~~~~~~i~v~GG~~~~~~~--~~v~~yd--~~~-~~  233 (301)
T 2vpj_A          164 CLGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-----RSGAGVALLNDHIYVVGGFDGTAHL--SSVEAYN--IRT-DS  233 (301)
T ss_dssp             EECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEECCBCSSSBC--CCEEEEE--TTT-TE
T ss_pred             EECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-----cccceEEEECCEEEEEeCCCCCccc--ceEEEEe--CCC-Cc
Confidence            99983     35789999999999998866665     2334556679999999987654333  3456666  323 34


Q ss_pred             hhhcCCCcHH
Q 040781          288 LKEIGEMPKA  297 (316)
Q Consensus       288 W~~i~~~p~~  297 (316)
                      |+++..||..
T Consensus       234 W~~~~~~p~~  243 (301)
T 2vpj_A          234 WTTVTSMTTP  243 (301)
T ss_dssp             EEEECCCSSC
T ss_pred             EEECCCCCCc
Confidence            9999888854

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.91  E-value=3.8e-23  Score=178.17  Aligned_cols=199  Identities=15%  Similarity=0.147  Sum_probs=154.7

Q ss_pred             CceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC---------ceeeeecCCCCceeecCCCCCCCCCCEE
Q 040781           81 TTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS---------KLSFSFDPLHLAWHHVDAPRVWRTDPVV  150 (316)
Q Consensus        81 ~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~---------~~~~v~np~t~~w~~lp~~~~~~~~~~~  150 (316)
                      ..++.||+..++|..++  +++. +.....+..++.||++||.         +++++|||.+++|..++++|.+|..++.
T Consensus        67 ~~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~  144 (315)
T 4asc_A           67 AYFLQFDHLDSEWLGMP--PLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTV  144 (315)
T ss_dssp             EEEEEEETTTTEEEECC--CBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred             cceEEecCCCCeEEECC--CCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeE
Confidence            34778999999999986  4432 2233444567999999982         5799999999999999999999999999


Q ss_pred             EEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEee
Q 040781          151 ALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFD  225 (316)
Q Consensus       151 ~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD  225 (316)
                      +..+++||++||..........+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.     .+.+.+||
T Consensus       145 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~yd  218 (315)
T 4asc_A          145 LSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT--ARSLF----GATVHDGRIIVAAGVTDTGLTSSAEVYS  218 (315)
T ss_dssp             EEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS--CCBSC----EEEEETTEEEEEEEECSSSEEEEEEEEE
T ss_pred             EEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC--chhce----EEEEECCEEEEEeccCCCCccceEEEEE
Confidence            99999999999985444467789999999999999998887  77777    788889999999984     34689999


Q ss_pred             CCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCC----C---cceeeEEEeeccCCchhhhhhcCCCc
Q 040781          226 PSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAE----D---VKSLKIWQVNIKGGSLEELKEIGEMP  295 (316)
Q Consensus       226 ~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~----~---~~~~~iw~l~~~~~~~~~W~~i~~~p  295 (316)
                      +++++|+.+..+|.+     ...+.++..+|+|+++||.....    .   ...-++|.+|  ..+ ++|+++...|
T Consensus       219 ~~~~~W~~~~~~p~~-----r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd--~~~-~~W~~~~~~~  287 (315)
T 4asc_A          219 ITDNKWAPFEAFPQE-----RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYN--EEE-KKWEGVLREI  287 (315)
T ss_dssp             TTTTEEEEECCCSSC-----CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE--TTT-TEEEEEESCS
T ss_pred             CCCCeEEECCCCCCc-----ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEec--CCC-ChhhhhccCC
Confidence            999999998876655     23345556799999999864211    0   1225678888  433 3499985544

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.91  E-value=5.7e-23  Score=177.32  Aligned_cols=198  Identities=15%  Similarity=0.161  Sum_probs=152.9

Q ss_pred             eEEeeCCCCceeEccCCCC-CCccceeeeecCCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCCE
Q 040781           83 AHAYDARSHVWIEIKNNQP-SSFDFLLRSSHSTLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDPV  149 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~-~~~~~~~~~s~~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~~  149 (316)
                      .+.||+..++|...+. +. .+......+..++.||++||.            +.+++|||.+++|..+++++.+|..++
T Consensus        26 ~~~yd~~~~~W~~~~~-~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~  104 (318)
T 2woz_A           26 AVAYDPMENECYLTAL-AEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFG  104 (318)
T ss_dssp             EEEEETTTTEEEEEEE-CTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCE
T ss_pred             eEEECCCCCceecccC-CccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccc
Confidence            6899999999988532 32 223333445567899999982            128899999999999999999999999


Q ss_pred             EEEECCEEEEEcCcCC-CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEE
Q 040781          150 VALVGDKVVVAGGACD-FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITV  222 (316)
Q Consensus       150 ~~~~~~~v~~~gg~~~-~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~  222 (316)
                      ++.++.+||++||... .......+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.      .+.++
T Consensus       105 ~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~  178 (318)
T 2woz_A          105 LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGH----NVISHNGMIYCLGGKTDDKKCTNRVF  178 (318)
T ss_dssp             EEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESC----EEEEETTEEEEECCEESSSCBCCCEE
T ss_pred             eEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--ccccc----EEEEECCEEEEEcCCCCCCCccceEE
Confidence            9999999999999753 22355779999999999999998887  66666    777899999999984      35689


Q ss_pred             EeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          223 SFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       223 ~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      .||+.+++|+.++.+|.+     ...+.++..+++|+++||......  .-.+|.+|  ..+ ++|+++..||..
T Consensus       179 ~yd~~~~~W~~~~~~p~~-----r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~yd--~~~-~~W~~~~~~p~~  243 (318)
T 2woz_A          179 IYNPKKGDWKDLAPMKTP-----RSMFGVAIHKGKIVIAGGVTEDGL--SASVEAFD--LKT-NKWEVMTEFPQE  243 (318)
T ss_dssp             EEETTTTEEEEECCCSSC-----CBSCEEEEETTEEEEEEEEETTEE--EEEEEEEE--TTT-CCEEECCCCSSC
T ss_pred             EEcCCCCEEEECCCCCCC-----cccceEEEECCEEEEEcCcCCCCc--cceEEEEE--CCC-CeEEECCCCCCc
Confidence            999999999998866665     233445567999999998654322  24566666  333 349999988864

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.90  E-value=2.2e-22  Score=173.67  Aligned_cols=194  Identities=16%  Similarity=0.215  Sum_probs=152.0

Q ss_pred             ceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC--------ceeeeecCCCCceeecCCCCCCCCCCEEEE
Q 040781           82 TAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS--------KLSFSFDPLHLAWHHVDAPRVWRTDPVVAL  152 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~--------~~~~v~np~t~~w~~lp~~~~~~~~~~~~~  152 (316)
                      .++.||+..++|..++  +++. +.....+..++.||++||.        +++++|||.+++|..++++|.+|..++++.
T Consensus        79 ~~~~~d~~~~~W~~~~--~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  156 (318)
T 2woz_A           79 YFFQLDNVSSEWVGLP--PLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS  156 (318)
T ss_dssp             EEEEEETTTTEEEECS--CBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE
T ss_pred             cEEEEeCCCCcEEECC--CCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE
Confidence            3788999999999986  4432 2233344457899999873        579999999999999999999999999999


Q ss_pred             ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCC
Q 040781          153 VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPS  227 (316)
Q Consensus       153 ~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~  227 (316)
                      .+++||++||..........+++||+.+++|+.+.++|.  ++..+    ++++.++.+|++||.     .+.+..||++
T Consensus       157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~  230 (318)
T 2woz_A          157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT--PRSMF----GVAIHKGKIVIAGGVTEDGLSASVEAFDLK  230 (318)
T ss_dssp             ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS--CCBSC----EEEEETTEEEEEEEEETTEEEEEEEEEETT
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC--Ccccc----eEEEECCEEEEEcCcCCCCccceEEEEECC
Confidence            999999999975444456789999999999999998887  77666    788899999999983     3568999999


Q ss_pred             CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCC-------CcceeeEEEeeccCCchhhhhhc
Q 040781          228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAE-------DVKSLKIWQVNIKGGSLEELKEI  291 (316)
Q Consensus       228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~-------~~~~~~iw~l~~~~~~~~~W~~i  291 (316)
                      +++|+.+..+|.+    + ..+.++..+++|+++||.....       ....-++|.+|  ..+ ++|+++
T Consensus       231 ~~~W~~~~~~p~~----r-~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd--~~~-~~W~~~  293 (318)
T 2woz_A          231 TNKWEVMTEFPQE----R-SSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE--DDK-KEWAGM  293 (318)
T ss_dssp             TCCEEECCCCSSC----C-BSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEE--TTT-TEEEEE
T ss_pred             CCeEEECCCCCCc----c-cceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEe--CCC-CEehhh
Confidence            9999999877665    2 2345567799999999875421       11235678888  433 349988

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.88  E-value=2.5e-21  Score=169.67  Aligned_cols=215  Identities=15%  Similarity=0.120  Sum_probs=152.6

Q ss_pred             CeEEEEecCCCCCCCCCCceEEeeCC--CCceeEccCCCCC--CccceeeeecCCEEEEEcCC-----------ceeeee
Q 040781           64 PWLLLHTQSQRTMAPYLTTAHAYDAR--SHVWIEIKNNQPS--SFDFLLRSSHSTLLYTLSPS-----------KLSFSF  128 (316)
Q Consensus        64 ~~l~~~~~~~~~~~~~~~~~~~~d~~--~~~w~~~~~~~~~--~~~~~~~~s~~~~l~~~gg~-----------~~~~v~  128 (316)
                      ..+++++...  .    ..++.||+.  .++|..++  +++  ++.....+..++.||++||.           +++++|
T Consensus        20 ~~iyv~GG~~--~----~~~~~~d~~~~~~~W~~~~--~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~y   91 (357)
T 2uvk_A           20 DTVYIGLGSA--G----TAWYKLDTQAKDKKWTALA--AFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKY   91 (357)
T ss_dssp             TEEEEECGGG--T----TCEEEEETTSSSCCEEECC--CCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEE
T ss_pred             CEEEEEeCcC--C----CeEEEEccccCCCCeeECC--CCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEE
Confidence            4455665543  2    348899997  48999996  443  33333445567999999985           468999


Q ss_pred             cCCCCceeecCCCC-CCCCCCEEEEECCEEEEEcCcCCCC---------------------------------CCCcEEE
Q 040781          129 DPLHLAWHHVDAPR-VWRTDPVVALVGDKVVVAGGACDFE---------------------------------DDPLAVE  174 (316)
Q Consensus       129 np~t~~w~~lp~~~-~~~~~~~~~~~~~~v~~~gg~~~~~---------------------------------~~~~~v~  174 (316)
                      ||.+++|..+++++ .+|..++++..+++||++||.....                                 .....++
T Consensus        92 d~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  171 (357)
T 2uvk_A           92 NPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLL  171 (357)
T ss_dssp             ETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEE
T ss_pred             eCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEE
Confidence            99999999999877 8888888888999999999964321                                 1357899


Q ss_pred             EEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecc------cceEEEeeC--CCCCccCCCcCCCCCcccce
Q 040781          175 MYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY------SGITVSFDP--STKGWSGPFHLRQFDHEKKV  246 (316)
Q Consensus       175 vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~------~~~i~~yD~--~~~~W~~~~~l~~~~~~~~~  246 (316)
                      +||+.+++|+.+.++|. ..+..+    ++++.++.+|++||.      .+.++.||+  ++++|+.+..++.|   ...
T Consensus       172 ~yd~~~~~W~~~~~~p~-~~~~~~----~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~  243 (357)
T 2uvk_A          172 SFDPSTQQWSYAGESPW-YGTAGA----AVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGV  243 (357)
T ss_dssp             EEETTTTEEEEEEECSS-CCCBSC----EEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCC
T ss_pred             EEeCCCCcEEECCCCCC-CCcccc----cEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---ccc
Confidence            99999999999987775 123335    778889999999983      456888876  89999999877666   333


Q ss_pred             eeeeeEeeCCEEEEEecCCCCC---------------CcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          247 FYSVITFANDRLIAVGLTGEAE---------------DVKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       247 ~~~~l~~~~g~L~v~g~~~~~~---------------~~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      ..+.++..+++|+++||.....               ......+|.+|  ..+ ++|+++..||..
T Consensus       244 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd--~~~-~~W~~~~~~p~~  306 (357)
T 2uvk_A          244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHL--WHN-GKWDKSGELSQG  306 (357)
T ss_dssp             BSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEE--CC----CEEEEECSSC
T ss_pred             ccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEe--cCC-CceeeCCCCCCC
Confidence            4445667899999999854221               11113455665  333 349999888854

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.86  E-value=1.6e-20  Score=164.43  Aligned_cols=203  Identities=15%  Similarity=0.153  Sum_probs=141.1

Q ss_pred             CCCceEEeeCCCCceeEccCCCCCCc--cceeeeecCCEEEEEcCC----------------------------------
Q 040781           79 YLTTAHAYDARSHVWIEIKNNQPSSF--DFLLRSSHSTLLYTLSPS----------------------------------  122 (316)
Q Consensus        79 ~~~~~~~~d~~~~~w~~~~~~~~~~~--~~~~~~s~~~~l~~~gg~----------------------------------  122 (316)
                      ..++++.||+..++|..++  +++|.  ........++.||++||.                                  
T Consensus        84 ~~~~v~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (357)
T 2uvk_A           84 VFNDVHKYNPKTNSWVKLM--SHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA  161 (357)
T ss_dssp             ECCCEEEEETTTTEEEECS--CCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred             eeccEEEEeCCCCcEEECC--CCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence            3566899999999999996  44322  222334467999999983                                  


Q ss_pred             ------ceeeeecCCCCceeecCCCCCCCCC-CEEEEECCEEEEEcCcCCCCCCCcEEEEEeC--CCCCeeecCCCCccc
Q 040781          123 ------KLSFSFDPLHLAWHHVDAPRVWRTD-PVVALVGDKVVVAGGACDFEDDPLAVEMYSV--DTRTWEICQSMPAVL  193 (316)
Q Consensus       123 ------~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~--~t~~W~~~~~~p~~~  193 (316)
                            +++++|||.+++|..+++++.++.. ++++..+.+||++||..........+++||.  .+++|+.+.++|...
T Consensus       162 ~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~  241 (357)
T 2uvk_A          162 EDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPD  241 (357)
T ss_dssp             GGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTT
T ss_pred             cccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCc
Confidence                  4799999999999999888876544 8888899999999997543334566888986  899999998876522


Q ss_pred             ccCccccceeEEEeCCEEEEEeccc----------------------ceEEEeeCCCCCccCCCcCCCCCcccceeeeee
Q 040781          194 KDSAASTWLSVAVNSRQLYVTEKYS----------------------GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI  251 (316)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~y~~~~~~----------------------~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l  251 (316)
                      .+..+    ++++.++.+|++||..                      ..+.+||+++++|+.+..+|.+    + ..+..
T Consensus       242 ~~~~~----~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~----r-~~~~~  312 (357)
T 2uvk_A          242 GVAGG----FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG----R-AYGVS  312 (357)
T ss_dssp             CCBSC----EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC----C-BSSEE
T ss_pred             ccccc----eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC----c-cccee
Confidence            33344    6788899999999842                      3578999999999999877766    2 22445


Q ss_pred             EeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          252 TFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       252 ~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      +..+++|+++||...... ..-++|.++  -.+ ++|.+....|.
T Consensus       313 ~~~~~~i~v~GG~~~~~~-~~~~v~~l~--~~~-~~~~~~~~~~~  353 (357)
T 2uvk_A          313 LPWNNSLLIIGGETAGGK-AVTDSVLIT--VKD-NKVTVQNLEHH  353 (357)
T ss_dssp             EEETTEEEEEEEECGGGC-EEEEEEEEE--C-C-CSCEEEC----
T ss_pred             EEeCCEEEEEeeeCCCCC-EeeeEEEEE--EcC-cEeEeeecccc
Confidence            667999999999754322 124556555  222 34988766654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.82  E-value=7.4e-19  Score=166.46  Aligned_cols=213  Identities=13%  Similarity=0.082  Sum_probs=151.2

Q ss_pred             eEEEEecCCCCCCCCCCceEEeeCCCCceeEccC-CC---CC-Cccceeeeec--CCEEEEEcCC-------ceeeeecC
Q 040781           65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKN-NQ---PS-SFDFLLRSSH--STLLYTLSPS-------KLSFSFDP  130 (316)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~-~~---~~-~~~~~~~~s~--~~~l~~~gg~-------~~~~v~np  130 (316)
                      .++++++..  . ...+.++.||+..++|..++. +|   ++ ++.....+..  ++.||++||.       +++++||+
T Consensus       399 ~iyv~GG~~--~-~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          399 DVFYMGGSN--P-YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CEEEECCBS--S-SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             EEEEECCCC--C-CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456666654  3 456678999999999998862 11   22 2222333445  8899999983       57999999


Q ss_pred             CCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEE
Q 040781          131 LHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAV  206 (316)
Q Consensus       131 ~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~  206 (316)
                      .+++|..+++++.+|..++.+.+ +++||++||.....    .+++||+.+++|+.+..   +|.  ++..+    ++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~--~r~~~----~a~v  545 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQ--NSLVS----AGLE  545 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGG--SCCBS----CEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCC--cccce----eEEE
Confidence            99999999999999999999886 99999999975543    79999999999999975   555  55555    4444


Q ss_pred             eC---CEEEEEecc-------cceEEEeeCCCCC------ccCCCcCCCCCcccceeeeeeEeeC-CEEEEEecCCCCCC
Q 040781          207 NS---RQLYVTEKY-------SGITVSFDPSTKG------WSGPFHLRQFDHEKKVFYSVITFAN-DRLIAVGLTGEAED  269 (316)
Q Consensus       207 ~~---~~~y~~~~~-------~~~i~~yD~~~~~------W~~~~~l~~~~~~~~~~~~~l~~~~-g~L~v~g~~~~~~~  269 (316)
                      .+   +.+|++||.       .+.+++||+.+++      |..+..+|+.    ....+.++..+ |+|+++||......
T Consensus       546 ~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~----~R~~~~~~~~~~~~iyv~GG~~~~~~  621 (695)
T 2zwa_A          546 FDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF----QRYGSQIKYITPRKLLIVGGTSPSGL  621 (695)
T ss_dssp             EETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG----CCBSCEEEEEETTEEEEECCBCSSCC
T ss_pred             EeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC----CcccceEEEeCCCEEEEECCccCCCC
Confidence            34   889999985       3579999999999      7776654322    22334445556 99999998654321


Q ss_pred             -cceeeEEEeeccCCchhhhhhcCCCcHHH
Q 040781          270 -VKSLKIWQVNIKGGSLEELKEIGEMPKAL  298 (316)
Q Consensus       270 -~~~~~iw~l~~~~~~~~~W~~i~~~p~~~  298 (316)
                       ...-++|.+|  ..+ ++|+.+ .+|...
T Consensus       622 ~~~~~~v~~yd--~~t-~~W~~~-~~p~~~  647 (695)
T 2zwa_A          622 FDRTNSIISLD--PLS-ETLTSI-PISRRI  647 (695)
T ss_dssp             CCTTTSEEEEE--TTT-TEEEEC-CCCHHH
T ss_pred             CCCCCeEEEEE--CCC-CeEEEe-eccccc
Confidence             1124456666  333 349854 667665

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.75  E-value=3.1e-17  Score=155.35  Aligned_cols=175  Identities=9%  Similarity=0.034  Sum_probs=128.9

Q ss_pred             ecCCEEEEEcCC-----ceeeeecCCCCceeecC-C-----CCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEe
Q 040781          111 SHSTLLYTLSPS-----KLSFSFDPLHLAWHHVD-A-----PRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYS  177 (316)
Q Consensus       111 s~~~~l~~~gg~-----~~~~v~np~t~~w~~lp-~-----~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~  177 (316)
                      ..++.||++||.     +++++|||.+++|..++ +     ++.+|..++++.+  ++++|++||..........+++||
T Consensus       395 ~~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          395 VAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             ECSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             EECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence            367889999984     67999999999999997 5     6888999999999  999999999866543567799999


Q ss_pred             CCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccc--eEEEeeCCCCCccCCCc---CCCCCcccceeeeee
Q 040781          178 VDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSG--ITVSFDPSTKGWSGPFH---LRQFDHEKKVFYSVI  251 (316)
Q Consensus       178 ~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~--~i~~yD~~~~~W~~~~~---l~~~~~~~~~~~~~l  251 (316)
                      +.+++|+.+.++|.  ++..+    ++++. ++.+|++||..+  .+++||+.+++|..+..   +|.+    +...+.+
T Consensus       475 ~~t~~W~~~~~~p~--~R~~h----~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~----r~~~~a~  544 (695)
T 2zwa_A          475 MKTREWSMIKSLSH--TRFRH----SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQN----SLVSAGL  544 (695)
T ss_dssp             TTTTEEEECCCCSB--CCBSC----EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGS----CCBSCEE
T ss_pred             CCCCcEEECCCCCC--Ccccc----eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCc----ccceeEE
Confidence            99999999998887  77777    77775 999999999543  68999999999998875   4444    2222223


Q ss_pred             E-eeC-CEEEEEecCCCCCCcceeeEEEeeccCCch---hhhhhcCCCc
Q 040781          252 T-FAN-DRLIAVGLTGEAEDVKSLKIWQVNIKGGSL---EELKEIGEMP  295 (316)
Q Consensus       252 ~-~~~-g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~---~~W~~i~~~p  295 (316)
                      + ..+ ++||++||.........-++|.++.+....   -+|+++..+|
T Consensus       545 v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p  593 (695)
T 2zwa_A          545 EFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP  593 (695)
T ss_dssp             EEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG
T ss_pred             EEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC
Confidence            2 223 899999987443211123445555113220   0188887765

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.73  E-value=8e-17  Score=152.07  Aligned_cols=204  Identities=14%  Similarity=0.109  Sum_probs=139.6

Q ss_pred             ceEEeeCCCCceeEccCCCCC-Cccce---eeeecCCEEEEEcCC--ceeeeecCCCCceeecCCCCCCCCCCEEEEE-C
Q 040781           82 TAHAYDARSHVWIEIKNNQPS-SFDFL---LRSSHSTLLYTLSPS--KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-G  154 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~-~~~~~---~~~s~~~~l~~~gg~--~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~  154 (316)
                      .++.||+..++|..++  +++ ++...   .....++.||++||.  .++++|||.+++|.++++++.+|..++.+.+ +
T Consensus       220 ~~~~yd~~t~~w~~~~--~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~d  297 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRT--VTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD  297 (656)
T ss_dssp             EEEEECTTTCCBCCCE--EEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred             EEEEEeCCCCcEEeCc--ccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecC
Confidence            4678999999999875  332 11111   233457899999984  5799999999999999999999999998888 9


Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-----CCCcccc-----cC----------c-----------------
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-----SMPAVLK-----DS----------A-----------------  197 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-----~~p~~~~-----~~----------~-----------------  197 (316)
                      ++||++||..+.......+++||+.+++|+.+.     +++....     ..          .                 
T Consensus       298 g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~  377 (656)
T 1k3i_A          298 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS  377 (656)
T ss_dssp             SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECS
T ss_pred             CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecC
Confidence            999999995433335677999999999999862     2222100     00          0                 


Q ss_pred             ------------------cccceeEEE----eCCEEEEEeccc--------c---eEEEeeCCCCCccCCC--cCCCCCc
Q 040781          198 ------------------ASTWLSVAV----NSRQLYVTEKYS--------G---ITVSFDPSTKGWSGPF--HLRQFDH  242 (316)
Q Consensus       198 ------------------~~~~~~~~~----~~~~~y~~~~~~--------~---~i~~yD~~~~~W~~~~--~l~~~~~  242 (316)
                                        .....+.++    .++.+|++||..        +   .|..||+.+++|..+.  .+|.+  
T Consensus       378 ~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~--  455 (656)
T 1k3i_A          378 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA--  455 (656)
T ss_dssp             TTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC--
T ss_pred             CcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCC--
Confidence                              000112333    489999999842        2   6889999999998875  56655  


Q ss_pred             ccceeeeeeEeeCCEEEEEecCCCC------CCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          243 EKKVFYSVITFANDRLIAVGLTGEA------EDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       243 ~~~~~~~~l~~~~g~L~v~g~~~~~------~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                        +......+..+|+|+++||....      .....+++|..+  .   ++|+++..||.
T Consensus       456 --R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~--t---~~W~~~~~~~~  508 (656)
T 1k3i_A          456 --RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPE--Q---DTFYKQNPNSI  508 (656)
T ss_dssp             --CBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGG--G---TEEEECCCCSS
T ss_pred             --cccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCC--C---CceeecCCCCC
Confidence              22223333448999999986421      122345555554  3   34999988774

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=99.63  E-value=4.2e-15  Score=140.34  Aligned_cols=139  Identities=15%  Similarity=0.134  Sum_probs=106.9

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeeeec-CCEEEEEcCC------------ceeeeecCCCCceeecCCCCCCCCCC-
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSH-STLLYTLSPS------------KLSFSFDPLHLAWHHVDAPRVWRTDP-  148 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~-~~~l~~~gg~------------~~~~v~np~t~~w~~lp~~~~~~~~~-  148 (316)
                      ..+||+..++|..+.  |++.......... ++.||++||.            ..+++|||.|++|..+++++.++..+ 
T Consensus       168 ~~~~dp~~~~W~~~~--~~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~  245 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTI--DLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFC  245 (656)
T ss_dssp             CCCCCTTSCEEEEEE--ECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSS
T ss_pred             cccCCCCCCeeeeec--cCCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCcc
Confidence            456899999999875  4433222222232 7899999862            26889999999999998777766544 


Q ss_pred             -EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecc------cc
Q 040781          149 -VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKY------SG  219 (316)
Q Consensus       149 -~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~------~~  219 (316)
                       +.++ .+++||++||....     .+++||+.+++|+.+.++|.  ++..+    ++++. ++++|++||.      .+
T Consensus       246 ~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~----s~~~~~dg~iyv~GG~~~~~~~~~  314 (656)
T 1k3i_A          246 PGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQ----SSATMSDGRVFTIGGSWSGGVFEK  314 (656)
T ss_dssp             CEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSC----EEEECTTSCEEEECCCCCSSSCCC
T ss_pred             ccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--ccccc----ceEEecCCeEEEEeCcccCCcccc
Confidence             3333 57899999996432     59999999999999998887  77766    77777 9999999992      25


Q ss_pred             eEEEeeCCCCCccCC
Q 040781          220 ITVSFDPSTKGWSGP  234 (316)
Q Consensus       220 ~i~~yD~~~~~W~~~  234 (316)
                      .+.+||+.+++|..+
T Consensus       315 ~~e~yd~~t~~W~~~  329 (656)
T 1k3i_A          315 NGEVYSPSSKTWTSL  329 (656)
T ss_dssp             CEEEEETTTTEEEEE
T ss_pred             cceEeCCCCCcceeC
Confidence            689999999999876

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.16  E-value=2.7e-11  Score=74.47  Aligned_cols=41  Identities=20%  Similarity=0.265  Sum_probs=36.8

Q ss_pred             CCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           15 NTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        15 ~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ...+..||+|++.+||++||..++.++++|||+|++++.++
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~   46 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Confidence            45689999999999999999999999999999999999876

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.86  E-value=1.2e-09  Score=91.02  Aligned_cols=41  Identities=17%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             CCCCCCCcHHHHHHHHhcCChhhhH-HHhhhhHHHHHHhhcc
Q 040781           15 NTNNSIVHGDILEAILSQVPLIDLA-SACYVSRSWNRAVFSS   55 (316)
Q Consensus        15 ~~~~~~Lp~dll~~IL~rLp~~~l~-r~r~VcK~W~~li~s~   55 (316)
                      +..+..||+||+.+||++||+++|+ +|++|||+|++++.++
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~   89 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA   89 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh
Confidence            3568899999999999999999999 9999999999999998

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.67  E-value=2.1e-06  Score=77.00  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFS   54 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s   54 (316)
                      +..||+||+.+||+.||+++|+++..|||+|+.++.+
T Consensus        15 ~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           15 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            5679999999999999999999999999999999987

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.52  E-value=5.8e-06  Score=73.76  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=37.4

Q ss_pred             CCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           16 TNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        16 ~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ..+..||+|++..||++|+..+|.++.+|||+|+.++.+.
T Consensus        17 d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~   56 (445)
T 2ovr_B           17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN   56 (445)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS
T ss_pred             ChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch
Confidence            4578899999999999999999999999999999999876

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.52  E-value=3e-05  Score=68.96  Aligned_cols=38  Identities=26%  Similarity=0.342  Sum_probs=35.4

Q ss_pred             CCCCcHH----HHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGD----ILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~d----ll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      +..||+|    |+..||+.|+..+|.++.+|||+|+.++.++
T Consensus        11 ~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~   52 (435)
T 1p22_A           11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG   52 (435)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT
T ss_pred             HHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh
Confidence            5679999    9999999999999999999999999999765

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.85  E-value=7.8e-06  Score=70.17  Aligned_cols=42  Identities=19%  Similarity=0.262  Sum_probs=37.9

Q ss_pred             CCCCCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           14 SNTNNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        14 ~~~~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ++.+|..||+|++.+||.+|+..++.+++.|||+|+.++.++
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~   46 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   46 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc
Confidence            356799999999999999999999999999999999999765

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.72  E-value=1.9e-05  Score=65.24  Aligned_cols=38  Identities=24%  Similarity=0.202  Sum_probs=36.7

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      ++.||+||+..||+.|++++|.++-+|||+||.++.++
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~   42 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP   42 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence            66899999999999999999999999999999999998

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.30  E-value=0.00011  Score=68.04  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CCCCCcHHHHHHHHhcCC-hhhhHHHhhhhHHHHHHh
Q 040781           17 NNSIVHGDILEAILSQVP-LIDLASACYVSRSWNRAV   52 (316)
Q Consensus        17 ~~~~Lp~dll~~IL~rLp-~~~l~r~r~VcK~W~~li   52 (316)
                      .|+.||+|++.+||++|| .+++.+++.|||+|+.+.
T Consensus         5 ~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~   41 (594)
T 2p1m_B            5 IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE   41 (594)
T ss_dssp             -----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHH
T ss_pred             chhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhh
Confidence            488999999999999999 999999999999999984

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=96.69  E-value=0.019  Score=46.38  Aligned_cols=104  Identities=12%  Similarity=0.028  Sum_probs=73.1

Q ss_pred             cCCEEEEEcCC---ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLSPS---KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .++.||..+|.   +.+.++|+.|++-..--+++......+++..+.++|+...      ....+.+||..+.+=.  ..
T Consensus        29 ~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~tl~~~--~t  100 (243)
T 3mbr_X           29 LRGHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLATLTPR--AR  100 (243)
T ss_dssp             ETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTTEEE--EE
T ss_pred             ECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCcCcEE--EE
Confidence            45788887764   6899999999987543233333344567778999999863      3366999999886532  22


Q ss_pred             CCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ++.  .....    +++..++.+|+..+ .+.|..+|+++.+
T Consensus       101 i~~--~~~Gw----glt~dg~~L~vSdg-s~~l~~iDp~t~~  135 (243)
T 3mbr_X          101 FRY--PGEGW----ALTSDDSHLYMSDG-TAVIRKLDPDTLQ  135 (243)
T ss_dssp             EEC--SSCCC----EEEECSSCEEEECS-SSEEEEECTTTCC
T ss_pred             EeC--CCCce----EEeeCCCEEEEECC-CCeEEEEeCCCCe
Confidence            322  22234    77778899999987 6789999999865

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.66  E-value=0.00085  Score=62.04  Aligned_cols=37  Identities=22%  Similarity=0.313  Sum_probs=33.5

Q ss_pred             CCCCcHHHHHHHHhcC-ChhhhHHHhhhhHHHHHHhhc
Q 040781           18 NSIVHGDILEAILSQV-PLIDLASACYVSRSWNRAVFS   54 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rL-p~~~l~r~r~VcK~W~~li~s   54 (316)
                      ...||+|++.+||++| |.+++.+++.|||+|+.+...
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~   50 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSE   50 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhc
Confidence            3579999999999999 899999999999999998543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.59  E-value=0.27  Score=41.45  Aligned_cols=138  Identities=12%  Similarity=0.004  Sum_probs=81.8

Q ss_pred             CCceEEeeCCCCceeEcc-----CCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEE
Q 040781           80 LTTAHAYDARSHVWIEIK-----NNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVAL  152 (316)
Q Consensus        80 ~~~~~~~d~~~~~w~~~~-----~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~  152 (316)
                      ...+..+|+..++...--     ..++ ..........++.+|+.. +.+.+.++|+.|++. ..++....+   ..++.
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p---~~i~~   91 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKL-GDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSP---RYIHF   91 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCC-BSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSE---EEEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCccc-CccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCC---cEEEE
Confidence            445777999887765310     0011 111111122467888876 457899999999876 445422222   23444


Q ss_pred             -ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc--cccCccccceeEEEeCCEEEEEec-ccceEEEeeCCC
Q 040781          153 -VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV--LKDSAASTWLSVAVNSRQLYVTEK-YSGITVSFDPST  228 (316)
Q Consensus       153 -~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~--~~~~~~~~~~~~~~~~~~~y~~~~-~~~~i~~yD~~~  228 (316)
                       -++++|+....      ...+.++|..+++-...-.....  ......    ++++.++.+|+... ..+.|.++|+.+
T Consensus        92 ~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~----~i~~~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           92 LSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTE----QMVQYGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             EETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCC----CEEEETTEEEEEECTTCCEEEEEETTT
T ss_pred             eCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcc----eEEEECCEEEEEcCCCCCEEEEEECCC
Confidence             56788887642      35689999998764322111110  000122    56668999999975 467899999998


Q ss_pred             CCc
Q 040781          229 KGW  231 (316)
Q Consensus       229 ~~W  231 (316)
                      .+.
T Consensus       162 ~~~  164 (328)
T 3dsm_A          162 DKV  164 (328)
T ss_dssp             TEE
T ss_pred             CeE
Confidence            764

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.37  E-value=0.24  Score=41.76  Aligned_cols=135  Identities=10%  Similarity=0.001  Sum_probs=78.6

Q ss_pred             ceEEeeCCCCce-eEccCCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCcee-ecCCCCCC---CCCCEEEEECC
Q 040781           82 TAHAYDARSHVW-IEIKNNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAWH-HVDAPRVW---RTDPVVALVGD  155 (316)
Q Consensus        82 ~~~~~d~~~~~w-~~~~~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~-~lp~~~~~---~~~~~~~~~~~  155 (316)
                      .+..+|+...+. ..++.  . ........+.++.+|+.. ..+.+.++|+.|++.. .++.....   ..-..++..+.
T Consensus        65 ~v~viD~~t~~~~~~i~~--~-~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~  141 (328)
T 3dsm_A           65 VIFAIDINTFKEVGRITG--F-TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGK  141 (328)
T ss_dssp             EEEEEETTTCCEEEEEEC--C-SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETT
T ss_pred             EEEEEECcccEEEEEcCC--C-CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECC
Confidence            366788887665 33421  1 111223333456889887 5679999999998754 33321100   01123444788


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEeccc----------ceEEEe
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYS----------GITVSF  224 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~----------~~i~~y  224 (316)
                      ++|+....     ....+.++|..+++....-....    ...    ++++. +|.+|+.....          +.|.++
T Consensus       142 ~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g~----~p~----~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~i  208 (328)
T 3dsm_A          142 YVYVNCWS-----YQNRILKIDTETDKVVDELTIGI----QPT----SLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRI  208 (328)
T ss_dssp             EEEEEECT-----TCCEEEEEETTTTEEEEEEECSS----CBC----CCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEE
T ss_pred             EEEEEcCC-----CCCEEEEEECCCCeEEEEEEcCC----Ccc----ceEEcCCCCEEEEECCCccCCccccCCceEEEE
Confidence            99988520     13569999999987544321111    111    33333 57888876532          679999


Q ss_pred             eCCCCCcc
Q 040781          225 DPSTKGWS  232 (316)
Q Consensus       225 D~~~~~W~  232 (316)
                      |+.+.+..
T Consensus       209 d~~t~~v~  216 (328)
T 3dsm_A          209 DAETFTVE  216 (328)
T ss_dssp             ETTTTEEE
T ss_pred             ECCCCeEE
Confidence            99987643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.35  E-value=0.066  Score=43.74  Aligned_cols=103  Identities=10%  Similarity=-0.067  Sum_probs=71.0

Q ss_pred             CCEEEEEcCC---ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          113 STLLYTLSPS---KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       113 ~~~l~~~gg~---~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      ++.||..+|.   +.+.++|+.|++-..--+++......+++..+.++|+...      ....+.+||..+.+=..  .+
T Consensus        52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~~~~~--ti  123 (262)
T 3nol_A           52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNLRQVR--SF  123 (262)
T ss_dssp             TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTCCEEE--EE
T ss_pred             CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECccCcEEE--EE
Confidence            5788887653   5899999999986432233323333457778999999864      33669999998866332  22


Q ss_pred             CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +.  .....    +++..++.+|+..+ .+.|..+|+++.+
T Consensus       124 ~~--~~eG~----glt~dg~~L~~SdG-s~~i~~iDp~T~~  157 (262)
T 3nol_A          124 NY--DGEGW----GLTHNDQYLIMSDG-TPVLRFLDPESLT  157 (262)
T ss_dssp             EC--SSCCC----CEEECSSCEEECCS-SSEEEEECTTTCS
T ss_pred             EC--CCCce----EEecCCCEEEEECC-CCeEEEEcCCCCe
Confidence            22  22233    67778889999987 5789999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.20  E-value=0.055  Score=44.28  Aligned_cols=103  Identities=7%  Similarity=-0.091  Sum_probs=70.8

Q ss_pred             cCCEEEEEcCC-ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          112 HSTLLYTLSPS-KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       112 ~~~~l~~~gg~-~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .++.||...|. +.+.++|+.|++-..-- ++......+++..+.++|+...      ....+.+||..+.+=..  .++
T Consensus        63 ~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~~~~--ti~  133 (268)
T 3nok_A           63 HQGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQRER--TTR  133 (268)
T ss_dssp             ETTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTEEEE--EEE
T ss_pred             ECCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCcEEE--EEe
Confidence            36888887764 57999999998754321 2322233457778899999864      33669999998865432  222


Q ss_pred             cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  .....    +++..++.+|+..+ ++.|..+|+++.+
T Consensus       134 ~--~~eGw----GLt~Dg~~L~vSdG-s~~l~~iDp~T~~  166 (268)
T 3nok_A          134 Y--SGEGW----GLCYWNGKLVRSDG-GTMLTFHEPDGFA  166 (268)
T ss_dssp             C--SSCCC----CEEEETTEEEEECS-SSEEEEECTTTCC
T ss_pred             C--CCcee----EEecCCCEEEEECC-CCEEEEEcCCCCe
Confidence            2  22233    77888999999986 6789999998865

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.12  E-value=0.057  Score=44.35  Aligned_cols=103  Identities=12%  Similarity=0.021  Sum_probs=69.3

Q ss_pred             CEEEEEcC---CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLSP---SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +.||+..|   .+.+.++|+.|++-..--+++......+++..+.++|+..-      ....+.+||..+.+  .+..++
T Consensus        32 g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~------~~~~v~viD~~t~~--v~~~i~  103 (266)
T 2iwa_A           32 DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW------LKNIGFIYDRRTLS--NIKNFT  103 (266)
T ss_dssp             TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET------TCSEEEEEETTTTE--EEEEEE
T ss_pred             CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe------cCCEEEEEECCCCc--EEEEEE
Confidence            78898765   47999999999986442122222233366777889999864      33569999998753  333333


Q ss_pred             cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .+ .....    +++..++.+|+..+ .+.|..+|+++.+
T Consensus       104 ~g-~~~g~----glt~Dg~~l~vs~g-s~~l~viD~~t~~  137 (266)
T 2iwa_A          104 HQ-MKDGW----GLATDGKILYGSDG-TSILYEIDPHTFK  137 (266)
T ss_dssp             CC-SSSCC----EEEECSSSEEEECS-SSEEEEECTTTCC
T ss_pred             CC-CCCeE----EEEECCCEEEEECC-CCeEEEEECCCCc
Confidence            31 12223    67777889999885 6789999998755

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.78  E-value=0.63  Score=37.92  Aligned_cols=146  Identities=8%  Similarity=0.093  Sum_probs=76.7

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      ..|.+|+.. +.+.+.+||+..+....+........-..++.. ++++|+....      ...+.+||.....-..+...
T Consensus       130 ~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~  203 (286)
T 1q7f_A          130 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR------AHCVKVFNYEGQYLRQIGGE  203 (286)
T ss_dssp             TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG------GTEEEEEETTCCEEEEESCT
T ss_pred             CCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCCCEEEEECC------CCEEEEEcCCCCEEEEEccC
Confidence            345677765 457899999866554444211111111133332 3678877532      24688999865433333211


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccc-eEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSG-ITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA  267 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~-~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~  267 (316)
                      ..  .....    ++++. +|.+|+.+...+ .|..||+..+.-..+. ....   ...........+|+|++... .  
T Consensus       204 g~--~~~p~----~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~-~~~~---~~~~~~i~~~~~g~l~vs~~-~--  270 (286)
T 1q7f_A          204 GI--TNYPI----GVGINSNGEILIADNHNNFNLTIFTQDGQLISALE-SKVK---HAQCFDVALMDDGSVVLASK-D--  270 (286)
T ss_dssp             TT--SCSEE----EEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEE-ESSC---CSCEEEEEEETTTEEEEEET-T--
T ss_pred             Cc--cCCCc----EEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEc-ccCC---CCcceeEEECCCCcEEEECC-C--
Confidence            00  01112    55654 578999886665 8999997654322222 1111   00111222344788888752 2  


Q ss_pred             CCcceeeEEEee
Q 040781          268 EDVKSLKIWQVN  279 (316)
Q Consensus       268 ~~~~~~~iw~l~  279 (316)
                         ..+.+|.+.
T Consensus       271 ---~~v~v~~~~  279 (286)
T 1q7f_A          271 ---YRLYIYRYV  279 (286)
T ss_dssp             ---TEEEEEECS
T ss_pred             ---CeEEEEEcc
Confidence               248899876

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.61  E-value=0.25  Score=39.83  Aligned_cols=100  Identities=11%  Similarity=-0.024  Sum_probs=66.7

Q ss_pred             CCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeC
Q 040781          147 DPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDP  226 (316)
Q Consensus       147 ~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~  226 (316)
                      .+++.+.+..+|.-.|..    ..+.+.++|+++++=.....++.  .....    +++..++.+|+.....+.+++||+
T Consensus        23 tqGL~~~~~~LyestG~~----g~S~v~~vD~~tgkv~~~~~l~~--~~fge----Gi~~~~~~ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           23 TEGLFYLRGHLYESTGET----GRSSVRKVDLETGRILQRAEVPP--PYFGA----GIVAWRDRLIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             EEEEEEETTEEEEEECCT----TSCEEEEEETTTCCEEEEEECCT--TCCEE----EEEEETTEEEEEESSSSEEEEEET
T ss_pred             cccEEEECCEEEEECCCC----CCceEEEEECCCCCEEEEEeCCC--Cccee----EEEEeCCEEEEEEeeCCEEEEEEC
Confidence            447777888999887743    23679999999987544444444  33334    788899999999988889999999


Q ss_pred             CCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781          227 STKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       227 ~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      .+.+  .+..++.+   .  ....+...+++|++..+
T Consensus        93 ~tl~--~~~ti~~~---~--~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           93 ATLT--PRARFRYP---G--EGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             TTTE--EEEEEECS---S--CCCEEEECSSCEEEECS
T ss_pred             CcCc--EEEEEeCC---C--CceEEeeCCCEEEEECC
Confidence            8754  23333333   1  12344445666777654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.51  E-value=0.24  Score=42.49  Aligned_cols=132  Identities=17%  Similarity=0.068  Sum_probs=72.6

Q ss_pred             ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEE
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKV  157 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v  157 (316)
                      .+..+|...++-...-  +..........+ .+..+++.+ ..+.+.+||..+++....-....  .-..++..  +..+
T Consensus        13 ~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l   88 (391)
T 1l0q_A           13 NISVIDVTSNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQV   88 (391)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEE
T ss_pred             EEEEEECCCCeEEEEe--ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEE
Confidence            3667887766543321  111111222222 345677766 45789999999887644322111  11123332  3456


Q ss_pred             EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781          158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                      ++.+.      ....+.+||..+++-........    ...    ++++.  +..+|+.+...+.|..||+.+.+.
T Consensus        89 ~~~~~------~~~~v~v~d~~~~~~~~~~~~~~----~~~----~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  150 (391)
T 1l0q_A           89 YVTNM------ASSTLSVIDTTSNTVAGTVKTGK----SPL----GLALSPDGKKLYVTNNGDKTVSVINTVTKAV  150 (391)
T ss_dssp             EEEET------TTTEEEEEETTTTEEEEEEECSS----SEE----EEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred             EEEEC------CCCEEEEEECCCCeEEEEEeCCC----Ccc----eEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            66553      22569999998876433311111    111    34443  456888887778999999987763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.36  E-value=1.1  Score=38.12  Aligned_cols=132  Identities=10%  Similarity=0.068  Sum_probs=74.0

Q ss_pred             ceEEeeCCCC--ceeEccCCCCC--------CccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCCE
Q 040781           82 TAHAYDARSH--VWIEIKNNQPS--------SFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDPV  149 (316)
Q Consensus        82 ~~~~~d~~~~--~w~~~~~~~~~--------~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~~  149 (316)
                      .+.++|...+  .|..-.  +..        ..........++.+|+.+..+.++++|+.|++  |+.-.. ......  
T Consensus        64 ~v~a~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~--  138 (376)
T 3q7m_A           64 LVKALNADDGKEIWSVSL--AEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSR--  138 (376)
T ss_dssp             EEEEEETTTCCEEEEEEC--CC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSC--
T ss_pred             eEEEEEccCCceeeeecC--ccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcC--
Confidence            3778998655  465432  110        00111223356888887666789999999886  543211 111222  


Q ss_pred             EEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          150 VALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       150 ~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      ....++.+++...       ...+..||..+++  |+.-...+........    ..++.++.+|+.. ..+.+.+||+.
T Consensus       139 p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~----~~~~~~~~v~~g~-~~g~l~~~d~~  206 (376)
T 3q7m_A          139 PVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGES----APTTAFGAAVVGG-DNGRVSAVLME  206 (376)
T ss_dssp             CEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCC----CCEEETTEEEECC-TTTEEEEEETT
T ss_pred             CEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCC----CcEEECCEEEEEc-CCCEEEEEECC
Confidence            2335777777542       2458889988775  8765332220011122    4455678887744 44578999997


Q ss_pred             CCC
Q 040781          228 TKG  230 (316)
Q Consensus       228 ~~~  230 (316)
                      +++
T Consensus       207 tG~  209 (376)
T 3q7m_A          207 QGQ  209 (376)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            664

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.09  E-value=0.22  Score=42.72  Aligned_cols=131  Identities=20%  Similarity=0.150  Sum_probs=68.4

Q ss_pred             ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEE
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKV  157 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v  157 (316)
                      .+..+|...++....-  ...........+ .+..+|+.+ +.+.+.+||..+++....-.....  ...++..  +..+
T Consensus        97 ~v~v~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~~~dg~~l  172 (391)
T 1l0q_A           97 TLSVIDTTSNTVAGTV--KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAVTPDGTKV  172 (391)
T ss_dssp             EEEEEETTTTEEEEEE--ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS--EEEEEECTTSSEE
T ss_pred             EEEEEECCCCeEEEEE--eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC--cceEEECCCCCEE
Confidence            3566777766543321  111111112222 345666665 457999999998876543221111  1122222  3456


Q ss_pred             EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEec--ccceEEEeeCCCCC
Q 040781          158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEK--YSGITVSFDPSTKG  230 (316)
Q Consensus       158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~--~~~~i~~yD~~~~~  230 (316)
                      ++.++.      ...+.+||..+++-........    ...    ++++.  +..+|+.+.  ..+.|..||+.+.+
T Consensus       173 ~~~~~~------~~~v~~~d~~~~~~~~~~~~~~----~~~----~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~  235 (391)
T 1l0q_A          173 YVANFD------SMSISVIDTVTNSVIDTVKVEA----APS----GIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNK  235 (391)
T ss_dssp             EEEETT------TTEEEEEETTTTEEEEEEECSS----EEE----EEEECTTSSEEEEEEECSSCCEEEEEETTTTE
T ss_pred             EEEeCC------CCEEEEEECCCCeEEEEEecCC----Ccc----ceEECCCCCEEEEEecCcCCCcEEEEECCCCe
Confidence            666542      2458899998875433211111    111    33333  456676664  56789999998764

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=94.99  E-value=0.18  Score=41.18  Aligned_cols=73  Identities=3%  Similarity=-0.076  Sum_probs=52.8

Q ss_pred             CEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          148 PVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       148 ~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      .++...++.+|...|..+    .+.+.++|++|++=....+++.  .....    +++..++.+|+.....+.+.+||+.
T Consensus        46 qGL~~~~~~LyestG~~g----~S~v~~vD~~Tgkv~~~~~l~~--~~Fge----Git~~g~~ly~ltw~~~~v~v~D~~  115 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNG----RSSIRKVDIESGKTLQQIELGK--RYFGE----GISDWKDKIVGLTWKNGLGFVWNIR  115 (262)
T ss_dssp             EEEEEETTEEEEEEEETT----EEEEEEECTTTCCEEEEEECCT--TCCEE----EEEEETTEEEEEESSSSEEEEEETT
T ss_pred             ceEEEECCEEEEECCCCC----CceEEEEECCCCcEEEEEecCC--cccee----EEEEeCCEEEEEEeeCCEEEEEECc
Confidence            456666888888777432    3578999999987433333433  33334    6888999999999888899999998


Q ss_pred             CCC
Q 040781          228 TKG  230 (316)
Q Consensus       228 ~~~  230 (316)
                      +.+
T Consensus       116 t~~  118 (262)
T 3nol_A          116 NLR  118 (262)
T ss_dssp             TCC
T ss_pred             cCc
Confidence            765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=94.95  E-value=1.5  Score=37.32  Aligned_cols=156  Identities=14%  Similarity=0.142  Sum_probs=82.7

Q ss_pred             ceEEeeCCCC--ceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCc--eeecCCCCC--CCCCCEEEEECC
Q 040781           82 TAHAYDARSH--VWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV--WRTDPVVALVGD  155 (316)
Q Consensus        82 ~~~~~d~~~~--~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~--~~~~~~~~~~~~  155 (316)
                      .+.++|...+  .|..-.  +.  .........++.+|+....+.++.+|+.|++  |+.-...+.  .+.....+..++
T Consensus       114 ~l~a~d~~tG~~~W~~~~--~~--~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~  189 (376)
T 3q7m_A          114 QVYALNTSDGTVAWQTKV--AG--EALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFG  189 (376)
T ss_dssp             EEEEEETTTCCEEEEEEC--SS--CCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETT
T ss_pred             EEEEEECCCCCEEEEEeC--CC--ceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECC
Confidence            3667887655  465431  21  1111112246787876666789999999986  654321111  111122333466


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCC--eeecCCCCccc------ccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRT--WEICQSMPAVL------KDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~--W~~~~~~p~~~------~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      .+++ |.      ....+..||..+++  |+.-...|...      .....    ...+.++.+|+.+ ..+.+.++|+.
T Consensus       190 ~v~~-g~------~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~----~p~~~~~~v~~~~-~~g~l~~~d~~  257 (376)
T 3q7m_A          190 AAVV-GG------DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDT----TPVVVNGVVFALA-YNGNLTALDLR  257 (376)
T ss_dssp             EEEE-CC------TTTEEEEEETTTCCEEEEEECCC-----------CCCC----CCEEETTEEEEEC-TTSCEEEEETT
T ss_pred             EEEE-Ec------CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCC----CcEEECCEEEEEe-cCcEEEEEECC
Confidence            6665 32      12458889987764  77643322100      00112    3456788999876 34578999998


Q ss_pred             CCC--ccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781          228 TKG--WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       228 ~~~--W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      +++  |+.-    ..    .  ...+...+++|++...
T Consensus       258 tG~~~w~~~----~~----~--~~~~~~~~~~l~~~~~  285 (376)
T 3q7m_A          258 SGQIMWKRE----LG----S--VNDFIVDGNRIYLVDQ  285 (376)
T ss_dssp             TCCEEEEEC----CC----C--EEEEEEETTEEEEEET
T ss_pred             CCcEEeecc----CC----C--CCCceEECCEEEEEcC
Confidence            765  5422    11    1  1223445777877764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=94.52  E-value=0.42  Score=39.76  Aligned_cols=149  Identities=13%  Similarity=0.135  Sum_probs=73.4

Q ss_pred             CCEEEEEc-CCceeeeecCCC-CceeecC--CCCCCCC-CC-EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC--CCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLH-LAWHHVD--APRVWRT-DP-VVALV--GDKVVVAGGACDFEDDPLAVEMYSVD--TRT  182 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t-~~w~~lp--~~~~~~~-~~-~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~--t~~  182 (316)
                      +..+|+.+ +.+.+.+||..+ ++...+.  ....... .. .++..  +..+++.+.      ....+.+|+..  +++
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~------~~~~i~~~~~~~~~g~  213 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE------LNSSVDVWELKDPHGN  213 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET------TTTEEEEEESSCTTSC
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC------CCCEEEEEEecCCCCc
Confidence            45677765 557899999877 6554321  1111111 11 22222  234666653      23468888884  455


Q ss_pred             eeec---CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCC--CCCccCCCcCCCCCcccceeeeeeE-ee
Q 040781          183 WEIC---QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPS--TKGWSGPFHLRQFDHEKKVFYSVIT-FA  254 (316)
Q Consensus       183 W~~~---~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~--~~~W~~~~~l~~~~~~~~~~~~~l~-~~  254 (316)
                      ++..   ..++........  ..++++.  +..+|+.+...+.|..||+.  ++++..+..++..   ..  ...+. .-
T Consensus       214 ~~~~~~~~~~~~~~~~~~~--~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~--~~~~~~s~  286 (343)
T 1ri6_A          214 IECVQTLDMMPENFSDTRW--AADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQ--PRGFNVDH  286 (343)
T ss_dssp             CEEEEEEECSCTTCCSCCC--EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SS--CCCEEECT
T ss_pred             EEEEeeccccCccccccCC--ccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---Cc--cceEEECC
Confidence            5433   223321110000  0134444  45788777666788999987  4444444333222   11  11222 23


Q ss_pred             CCE-EEEEecCCCCCCcceeeEEEee
Q 040781          255 NDR-LIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       255 ~g~-L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      +|+ |++.+...     ..+.+|.++
T Consensus       287 dg~~l~~~~~~~-----~~v~v~~~d  307 (343)
T 1ri6_A          287 SGKYLIAAGQKS-----HHISVYEIV  307 (343)
T ss_dssp             TSSEEEEECTTT-----CEEEEEEEE
T ss_pred             CCCEEEEecCCC-----CeEEEEEEc
Confidence            454 55444222     348899888

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.12  E-value=1.8  Score=34.60  Aligned_cols=142  Identities=10%  Similarity=0.002  Sum_probs=75.1

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .|.+|+.. +.+.++++|+.+........... ..-..++.. ++++|+....      ...+.+||..+..-...... 
T Consensus       118 ~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-  189 (270)
T 1rwi_B          118 QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT-  189 (270)
T ss_dssp             TCCEEEEEGGGTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS-
T ss_pred             CCCEEEEECCCCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc-
Confidence            45677764 44678999877765443321111 111233333 3567776531      24588898877653322111 


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeee-EeeCCEEEEEecCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVI-TFANDRLIAVGLTGEAE  268 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l-~~~~g~L~v~g~~~~~~  268 (316)
                      .  .....    ++++. +|.+|+.....+.|..||+.+..-..   .+..   .......+ ...+|+|++......  
T Consensus       190 ~--~~~p~----~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~---~~~~---~~~~p~~i~~~~~g~l~v~~~~~~--  255 (270)
T 1rwi_B          190 D--ITAPW----GIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV---LPFT---GLNTPLAVAVDSDRTVYVADRGND--  255 (270)
T ss_dssp             S--CCSEE----EEEECTTCCEEEEETTTSCEEEECTTCSCCEE---CCCC---SCSCEEEEEECTTCCEEEEEGGGT--
T ss_pred             C--CCCce----EEEECCCCCEEEEECCCCcEEEEcCCCCccee---eccC---CCCCceeEEECCCCCEEEEECCCC--
Confidence            1  11112    56665 45899988766789999997654221   1111   00011222 234678888875332  


Q ss_pred             CcceeeEEEee
Q 040781          269 DVKSLKIWQVN  279 (316)
Q Consensus       269 ~~~~~~iw~l~  279 (316)
                         .|.++.++
T Consensus       256 ---~v~~~~~~  263 (270)
T 1rwi_B          256 ---RVVKLTSL  263 (270)
T ss_dssp             ---EEEEECCC
T ss_pred             ---EEEEEcCC
Confidence               37777666

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.04  E-value=2.6  Score=36.16  Aligned_cols=104  Identities=15%  Similarity=0.089  Sum_probs=53.7

Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCE-EEEEecccceEEEeeCCCCCcc
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQ-LYVTEKYSGITVSFDPSTKGWS  232 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~-~y~~~~~~~~i~~yD~~~~~W~  232 (316)
                      ++.++.|+.+      ..+.+||..+++-........  .....    ++++. ++. +.+.++..+.|..||+.+.. .
T Consensus       259 ~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~--~~~v~----~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~-~  325 (420)
T 3vl1_A          259 GKYVIAGHVS------GVITVHNVFSKEQTIQLPSKF--TCSCN----SLTVDGNNANYIYAGYENGMLAQWDLRSPE-C  325 (420)
T ss_dssp             TEEEEEEETT------SCEEEEETTTCCEEEEECCTT--SSCEE----EEEECSSCTTEEEEEETTSEEEEEETTCTT-S
T ss_pred             CCEEEEEcCC------CeEEEEECCCCceeEEccccc--CCCce----eEEEeCCCCCEEEEEeCCCeEEEEEcCCCc-C
Confidence            4555665432      348899988765221111101  11111    34444 333 66667677889999998765 1


Q ss_pred             CCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          233 GPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       233 ~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      .+..+...   ....-..+...++++++.++...     .+.+|.+.
T Consensus       326 ~~~~~~~~---~~~~v~~~~~~~~~~l~s~~~d~-----~v~iw~~~  364 (420)
T 3vl1_A          326 PVGEFLIN---EGTPINNVYFAAGALFVSSGFDT-----SIKLDIIS  364 (420)
T ss_dssp             CSEEEEES---TTSCEEEEEEETTEEEEEETTTE-----EEEEEEEC
T ss_pred             chhhhhcc---CCCCceEEEeCCCCEEEEecCCc-----cEEEEecc
Confidence            12212211   01111223344677777765333     49999997

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=94.01  E-value=2  Score=34.76  Aligned_cols=107  Identities=6%  Similarity=0.008  Sum_probs=60.2

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      ..|.+|+.. +.+.++++|+ +++...+..+........++.. ++++++...      ....+..||. +++...+. .
T Consensus       108 ~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~-~  178 (299)
T 2z2n_A          108 PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFK-I  178 (299)
T ss_dssp             TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEE-C
T ss_pred             CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEee-C
Confidence            346677765 4568999999 7766554321111111233332 356776542      2245888888 77666541 1


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG  233 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~  233 (316)
                      +.. .....    ++++. ++.+|+.....+.|..||+ ++.+..
T Consensus       179 ~~~-~~~~~----~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~  217 (299)
T 2z2n_A          179 PTP-ASGPV----GITKGNDDALWFVEIIGNKIGRITT-SGEITE  217 (299)
T ss_dssp             SST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred             CCC-CCcce----eEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence            110 11111    45555 4778988765668899999 666554

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=93.98  E-value=1.9  Score=36.02  Aligned_cols=101  Identities=16%  Similarity=0.094  Sum_probs=52.5

Q ss_pred             eeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-e-eecC-CCCcccccCccc
Q 040781          124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-W-EICQ-SMPAVLKDSAAS  199 (316)
Q Consensus       124 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W-~~~~-~~p~~~~~~~~~  199 (316)
                      .++++|+.+++....-.......-..+++. ++++|+...      ....+.+||..... . ..+. ............
T Consensus        70 ~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~  143 (329)
T 3fvz_A           70 TILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDV------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFC  143 (329)
T ss_dssp             CEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEET------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCS
T ss_pred             cEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEEC------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccC
Confidence            689999988876432111111111133332 456887763      23468888876542 1 1111 110000000000


Q ss_pred             cceeEEEe--CCEEEEEec-ccceEEEeeCCCCC
Q 040781          200 TWLSVAVN--SRQLYVTEK-YSGITVSFDPSTKG  230 (316)
Q Consensus       200 ~~~~~~~~--~~~~y~~~~-~~~~i~~yD~~~~~  230 (316)
                      .-.++++.  ++.+|+.++ ..+.|..||.....
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g~~  177 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSGKF  177 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEECTTSCE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCE
Confidence            01267776  689999996 57789999965443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=93.82  E-value=0.81  Score=38.58  Aligned_cols=103  Identities=12%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             EEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      ++.| ..+.+.+||...+....+......... ..++.. .  .++++.|+.+      ..+.+||..+++|..+..+..
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~   99 (379)
T 3jrp_A           26 LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAV   99 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEEEEEECC
T ss_pred             EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeEeeeecC
Confidence            3444 456799998875554443221111111 123222 1  4555555432      348899999988876643321


Q ss_pred             ccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       ......    .+++..   +.+.+.++..+.|..||+.+..
T Consensus       100 -~~~~v~----~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~  136 (379)
T 3jrp_A          100 -HSASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENG  136 (379)
T ss_dssp             -CSSCEE----EEEECCGGGCSEEEEEETTSEEEEEECCTTS
T ss_pred             -CCcceE----EEEeCCCCCCCEEEEecCCCcEEEEecCCCC
Confidence             011111    344442   4566666677889999998764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=93.75  E-value=2.1  Score=34.15  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      .|.+|+....+.+++||+.++....++.... ..-..++.. ++++|+....      ...+.+|+..+......... .
T Consensus        77 ~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~  148 (270)
T 1rwi_B           77 AGTVYVTDFNNRVVTLAAGSNNQTVLPFDGL-NYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFT-G  148 (270)
T ss_dssp             TCCEEEEETTTEEEEECTTCSCCEECCCCSC-SSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCC-S
T ss_pred             CCCEEEEcCCCEEEEEeCCCceEeeeecCCc-CCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccc-c
Confidence            3557776655689999998876655532111 111133332 4567776431      23577787666544332111 0


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        .....    ++++. ++.+|+.....+.|..||+.+..
T Consensus       149 --~~~p~----~i~~~~~g~l~v~~~~~~~i~~~~~~~~~  182 (270)
T 1rwi_B          149 --LNDPD----GVAVDNSGNVYVTDTDNNRVVKLEAESNN  182 (270)
T ss_dssp             --CCSCC----CEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             --CCCce----eEEEeCCCCEEEEECCCCEEEEEecCCCc
Confidence              11112    45555 47799988766789999998765

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.67  E-value=0.7  Score=37.73  Aligned_cols=96  Identities=10%  Similarity=0.004  Sum_probs=62.1

Q ss_pred             CEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          148 PVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       148 ~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      .++...+..+|...|..      ..+.++|++|++=.... ++.  .....    +++..++.+|+.....+.+.+||+.
T Consensus        58 qGL~~~~~~Ly~stG~~------g~v~~iD~~Tgkv~~~~-l~~--~~Fge----Git~~g~~Ly~ltw~~~~v~V~D~~  124 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQ------GTLRQLSLESAQPVWME-RLG--NIFAE----GLASDGERLYQLTWTEGLLFTWSGM  124 (268)
T ss_dssp             EEEEEETTEEEEEETTT------TEEEECCSSCSSCSEEE-ECT--TCCEE----EEEECSSCEEEEESSSCEEEEEETT
T ss_pred             ceEEEECCEEEEEcCCC------CEEEEEECCCCcEEeEE-CCC--Cccee----EEEEeCCEEEEEEccCCEEEEEECC
Confidence            46767788999987742      23889999988633222 433  22334    6888999999998888899999998


Q ss_pred             CCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781          228 TKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       228 ~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      +.+-  +..++.+   .  ....+...+++|++..+
T Consensus       125 Tl~~--~~ti~~~---~--eGwGLt~Dg~~L~vSdG  153 (268)
T 3nok_A          125 PPQR--ERTTRYS---G--EGWGLCYWNGKLVRSDG  153 (268)
T ss_dssp             TTEE--EEEEECS---S--CCCCEEEETTEEEEECS
T ss_pred             cCcE--EEEEeCC---C--ceeEEecCCCEEEEECC
Confidence            7652  2323322   1  11344455667777654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=93.62  E-value=2.7  Score=34.94  Aligned_cols=109  Identities=6%  Similarity=0.081  Sum_probs=60.7

Q ss_pred             cCCEEEEEc-C-CceeeeecCCCCceee-cCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLS-P-SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~g-g-~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .++.+|+.+ + .+.++++|+.+++-.. ++..........+..-+..+|+...       ...+.+||..+++=.....
T Consensus       151 dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~  223 (353)
T 3vgz_A          151 ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKK  223 (353)
T ss_dssp             TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEE
Confidence            457777765 3 4679999999876543 3312221222223223456666543       2457789988765322211


Q ss_pred             CCcc-cccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781          189 MPAV-LKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       189 ~p~~-~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                      .+.. .....    .++++.  ++.+|+.+...+.|..||+.+.+.
T Consensus       224 ~~~~~~~~~~----~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  265 (353)
T 3vgz_A          224 LLDDGKEHFF----INISLDTARQRAFITDSKAAEVLVVDTRNGNI  265 (353)
T ss_dssp             CCCSSSCCCE----EEEEEETTTTEEEEEESSSSEEEEEETTTCCE
T ss_pred             cCCCCCCccc----ceEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            1110 01111    134444  667888877667899999987763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=93.47  E-value=2.3  Score=36.78  Aligned_cols=106  Identities=12%  Similarity=0.060  Sum_probs=61.3

Q ss_pred             cCCEEEEEcCC-ceeeeecCCCCceeecCCCCCC-C-CCC--EEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781          112 HSTLLYTLSPS-KLSFSFDPLHLAWHHVDAPRVW-R-TDP--VVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI  185 (316)
Q Consensus       112 ~~~~l~~~gg~-~~~~v~np~t~~w~~lp~~~~~-~-~~~--~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~  185 (316)
                      .++.+++.++. +.+.+||+.+++.....+.... . ...  .++. -+.++++.++.      ...+.+||..+++-..
T Consensus       132 ~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~------d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          132 DNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ------ANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             SSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG------GTEEEEEETTTCCEEE
T ss_pred             CCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC------CCEEEEEECCCceEEE
Confidence            36777777643 5799999999887654322111 1 111  1222 24677777652      2458899988765332


Q ss_pred             cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .-.. .  .....    ++++.  +..+|+.+...+.|..||+.+.+
T Consensus       206 ~~~~-~--~~~~~----~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~  245 (433)
T 3bws_A          206 TVDL-T--GKWSK----ILLYDPIRDLVYCSNWISEDISVIDRKTKL  245 (433)
T ss_dssp             EEEC-S--SSSEE----EEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEcC-C--CCCee----EEEEcCCCCEEEEEecCCCcEEEEECCCCc
Confidence            2111 1  11111    34444  56678887667789999998765

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=93.36  E-value=2.3  Score=34.42  Aligned_cols=106  Identities=8%  Similarity=0.099  Sum_probs=58.7

Q ss_pred             cCCEEEEEcC--CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLSP--SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~gg--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      ..+.+|+.+.  ...+.+||+..+....+..... ..-..++.. ++++|+...      ....+.+||.....-..+..
T Consensus        87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~-~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~~g~~~~~~~~  159 (286)
T 1q7f_A           87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATIL-QHPRGVTVDNKGRIIVVEC------KVMRVIIFDQNGNVLHKFGC  159 (286)
T ss_dssp             TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTC-SCEEEEEECTTSCEEEEET------TTTEEEEECTTSCEEEEEEC
T ss_pred             CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccC-CCceEEEEeCCCCEEEEEC------CCCEEEEEcCCCCEEEEeCC
Confidence            4577888763  5789999965444444422111 111123332 356777653      22468888876543333321


Q ss_pred             CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ...  .....    ++++. ++.+|+.+...+.|..||+..+.
T Consensus       160 ~~~--~~~p~----~i~~~~~g~l~v~~~~~~~i~~~~~~g~~  196 (286)
T 1q7f_A          160 SKH--LEFPN----GVVVNDKQEIFISDNRAHCVKVFNYEGQY  196 (286)
T ss_dssp             TTT--CSSEE----EEEECSSSEEEEEEGGGTEEEEEETTCCE
T ss_pred             CCc--cCCcE----EEEECCCCCEEEEECCCCEEEEEcCCCCE
Confidence            101  11112    55555 47899988777789999986654

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=92.76  E-value=1.3  Score=37.24  Aligned_cols=107  Identities=10%  Similarity=0.055  Sum_probs=54.4

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      +..|+..+..+.+.+||..++++..+......... ..++.. .  ...++.++.      ...+.+||..++.-.....
T Consensus        69 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~  142 (379)
T 3jrp_A           69 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPII  142 (379)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCTTSCCCEEE
T ss_pred             CCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecC------CCcEEEEecCCCCceeeEE
Confidence            34544444457899999999876554322211111 122222 1  345555542      3458888887763211110


Q ss_pred             CCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +.. ....    ...++..              ++.+.+.++..+.|..||+.+..
T Consensus       143 ~~~-~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  193 (379)
T 3jrp_A          143 IDA-HAIG----VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  193 (379)
T ss_dssp             EEC-CTTC----EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTT
T ss_pred             ecC-CCCc----eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCC
Confidence            000 0000    1123333              36667777777789999987654

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.68  E-value=1.9  Score=35.48  Aligned_cols=145  Identities=10%  Similarity=0.054  Sum_probs=67.8

Q ss_pred             CEEEEEcCCceeeeecCCCCcee-ecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWH-HVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~-~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      ..++..+..+.+.+||..+++.. .++....+  -..+... +.+.++.|+.+      ..+.+||..+++-...-....
T Consensus       120 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~  191 (312)
T 4ery_A          120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP--VSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD  191 (312)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSS
T ss_pred             CEEEEEeCCCcEEEEECCCCEEEEEecCCCCc--EEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccC
Confidence            34333334578999998877643 23211111  0112221 34555555432      348899988765422111101


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                        .....    .+++. ++.+.+.++..+.|..||+.+.+-.  ..+.................++.+++.|+...    
T Consensus       192 --~~~~~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----  259 (312)
T 4ery_A          192 --NPPVS----FVKFSPNGKYILAATLDNTLKLWDYSKGKCL--KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDN----  259 (312)
T ss_dssp             --CCCEE----EEEECTTSSEEEEEETTTEEEEEETTTTEEE--EEECSSCCSSSCCCEEEECSSSCEEEECCTTS----
T ss_pred             --CCceE----EEEECCCCCEEEEEcCCCeEEEEECCCCcEE--EEEEecCCceEEEEEEEEeCCCcEEEEECCCC----
Confidence              11111    23333 4555666667778999999876421  11111100000011111223566666665433    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.+|.++
T Consensus       260 -~i~vwd~~  267 (312)
T 4ery_A          260 -LVYIWNLQ  267 (312)
T ss_dssp             -CEEEEETT
T ss_pred             -EEEEEECC
Confidence             38889886

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.43  E-value=3.6  Score=33.17  Aligned_cols=134  Identities=6%  Similarity=-0.068  Sum_probs=70.0

Q ss_pred             eEEeeCCCCceeEccCCCCCCccc-eeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDF-LLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV  159 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~-~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~  159 (316)
                      +..+|+. +....... +...... .......|.+|+.. +.+.++++|+. ++...+..+.....-..++.. ++++++
T Consensus        38 v~~~d~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v  114 (299)
T 2z2n_A           38 ISCINLD-GKITEYPL-PTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWF  114 (299)
T ss_dssp             EEEECTT-CCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEE
T ss_pred             EEEEcCC-CCeEEecC-CcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEE
Confidence            6678877 66655432 2111111 12222345667665 35689999986 555444321111111133332 356777


Q ss_pred             EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781          160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG  233 (316)
Q Consensus       160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~  233 (316)
                      ....      ...+.+||. +++...... +.. .....    ++++. ++.+|+.....+.|..||+ +++...
T Consensus       115 ~~~~------~~~i~~~d~-~g~~~~~~~-~~~-~~~~~----~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~  175 (299)
T 2z2n_A          115 TEMN------GNRIGRITD-DGKIREYEL-PNK-GSYPS----FITLGSDNALWFTENQNNAIGRITE-SGDITE  175 (299)
T ss_dssp             EETT------TTEEEEECT-TCCEEEEEC-SST-TCCEE----EEEECTTSCEEEEETTTTEEEEECT-TCCEEE
T ss_pred             EecC------CceEEEECC-CCCEEEecC-CCC-CCCCc----eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE
Confidence            6421      245778888 555554321 110 11112    45555 5788988765568899999 666544

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=92.31  E-value=3.1  Score=38.14  Aligned_cols=110  Identities=16%  Similarity=0.213  Sum_probs=67.3

Q ss_pred             cCCEEEEEcC-CceeeeecC-CCCc--eeecCCCCC-----C---CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCC
Q 040781          112 HSTLLYTLSP-SKLSFSFDP-LHLA--WHHVDAPRV-----W---RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVD  179 (316)
Q Consensus       112 ~~~~l~~~gg-~~~~~v~np-~t~~--w~~lp~~~~-----~---~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~  179 (316)
                      .++.||+.+. .+.++.+|+ .|++  |+.-.....     .   ......++.+++||+...       ...+..+|..
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~  133 (571)
T 2ad6_A           61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------NGHLLALDAK  133 (571)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETT
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------CCEEEEEECC
Confidence            5789999887 678999999 8875  654322111     0   111234457888888642       2458889988


Q ss_pred             CCC--eeecCCCCcccccCccccceeEEEeCCEEEEEecc-----cceEEEeeCCCCC--cc
Q 040781          180 TRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKG--WS  232 (316)
Q Consensus       180 t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~--W~  232 (316)
                      +++  |+.-..-+........    +..+.++.+|+....     .+.|.+||..+++  |+
T Consensus       134 tG~~~W~~~~~~~~~~~~~~~----~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  191 (571)
T 2ad6_A          134 TGKINWEVEVCDPKVGSTLTQ----APFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWR  191 (571)
T ss_dssp             TCCEEEEEECCCGGGTCBCCS----CCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             CCCEEEEecCCCCCccceecc----CCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence            874  8754221110001112    344578899886542     4689999998765  64

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=92.19  E-value=0.51  Score=40.10  Aligned_cols=148  Identities=11%  Similarity=0.120  Sum_probs=67.7

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSM  189 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~  189 (316)
                      +.+++.| ..+.+.+||..++.|..+..+...... ..++.. +.+.++.|+.+      ..+.+||..++. |.....+
T Consensus        23 g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~   96 (377)
T 3dwl_C           23 RTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVL   96 (377)
T ss_dssp             SSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEEC
T ss_pred             CCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEe
Confidence            4444555 347899999998876655433221111 122222 24455555422      348888888776 5544222


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC-ccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG-WSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEA  267 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~-W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~  267 (316)
                      .. ......    .+++. ++.+.+.++..+.|..||+.++. |.....+..+. ..... +....-++++++.++... 
T Consensus        97 ~~-~~~~v~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~-~~~~~~~~~~l~~~~~d~-  168 (377)
T 3dwl_C           97 LR-LNRAAT----FVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTIL-SLDWHPNNVLLAAGCADR-  168 (377)
T ss_dssp             CC-CSSCEE----EEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC-CSCEE-EEEECTTSSEEEEEESSS-
T ss_pred             cc-cCCceE----EEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-CCCeE-EEEEcCCCCEEEEEeCCC-
Confidence            11 011111    33333 45555666667788999998765 43333333310 01111 111223556666665433 


Q ss_pred             CCcceeeEEEee
Q 040781          268 EDVKSLKIWQVN  279 (316)
Q Consensus       268 ~~~~~~~iw~l~  279 (316)
                          .+.+|.++
T Consensus       169 ----~i~iwd~~  176 (377)
T 3dwl_C          169 ----KAYVLSAY  176 (377)
T ss_dssp             ----CEEEEEEC
T ss_pred             ----EEEEEEEE
Confidence                38899985

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=92.12  E-value=4.2  Score=33.26  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=52.0

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ..|+..+..+.+.+||..+++....-.  . ....  .+... +.+.++.|+.+      ..+.+||..+++-...  ++
T Consensus        78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~--~-~~~~v~~~~~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~--~~  146 (312)
T 4ery_A           78 NLLVSASDDKTLKIWDVSSGKCLKTLK--G-HSNYVFCCNFNPQSNLIVSGSFD------ESVRIWDVKTGKCLKT--LP  146 (312)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEE--C-CSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTCCEEEE--EC
T ss_pred             CEEEEECCCCEEEEEECCCCcEEEEEc--C-CCCCEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCEEEEE--ec
Confidence            444333345789999988876432111  0 1111  11111 23455555432      3488999887653221  11


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      . ......    ++++. ++.+.+.++..+.|..||+.+.+
T Consensus       147 ~-~~~~v~----~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  182 (312)
T 4ery_A          147 A-HSDPVS----AVHFNRDGSLIVSSSYDGLCRIWDTASGQ  182 (312)
T ss_dssp             C-CSSCEE----EEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             C-CCCcEE----EEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            1 011111    33333 45566777777889999998765

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=92.02  E-value=2.1  Score=36.79  Aligned_cols=103  Identities=10%  Similarity=0.044  Sum_probs=55.5

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV  192 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~  192 (316)
                      +.++..+..+.+.+||..+++...+-.......-..++.. +.+.+++|+.+      ..+.+||..+++-...-.. . 
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~-  175 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAG-H-  175 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECC-C-
T ss_pred             CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecC-C-
Confidence            4444555557899999999887654322111111122222 34555555432      3488999887653322111 1 


Q ss_pred             cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          193 LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       .....    .+..++ .+.+.++..+.|..||+....
T Consensus       176 -~~~v~----~~~~~~-~~l~~~~~dg~i~i~d~~~~~  207 (401)
T 4aez_A          176 -QARVG----CLSWNR-HVLSSGSRSGAIHHHDVRIAN  207 (401)
T ss_dssp             -SSCEE----EEEEET-TEEEEEETTSEEEEEETTSSS
T ss_pred             -CCceE----EEEECC-CEEEEEcCCCCEEEEecccCc
Confidence             11111    445544 455566677889999998543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=91.73  E-value=2.3  Score=39.86  Aligned_cols=111  Identities=20%  Similarity=0.215  Sum_probs=67.5

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .++.||+.+..+.++.+|+.|++  |+.-+..+..        ....+.++.+++||+...       ...+..+|..|+
T Consensus        65 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------dg~l~alD~~tG  137 (668)
T 1kv9_A           65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTG  137 (668)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTC
T ss_pred             ECCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC-------CCEEEEEECCCC
Confidence            57888988766789999999886  6653221110        011234456788887542       245888998887


Q ss_pred             C--eeecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781          182 T--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG  233 (316)
Q Consensus       182 ~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~  233 (316)
                      +  |+.-..-+........    +..+.++.+|+..+     ..+.|.+||..+++  |+.
T Consensus       138 ~~~W~~~~~~~~~~~~~~~----~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          138 KAIWSQQTTDPAKPYSITG----APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             CEEEEEECSCTTSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CEeeeeccCCCCCcceecC----CCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            5  8764321110011112    34567888888643     24689999998765  653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=91.70  E-value=1.3  Score=42.12  Aligned_cols=106  Identities=14%  Similarity=0.061  Sum_probs=58.1

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      ..+...+..+.+.+||..++.+..+......... ..+... .  ...++.|+.+      ..+.+||..++.|..+...
T Consensus        22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~D------g~I~vwd~~~~~~~~~~~~   95 (753)
T 3jro_A           22 KRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVH   95 (753)
T ss_dssp             CCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETT------SCEEEEEEETTEEEEEEEE
T ss_pred             CeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCC------CeEEEEECCCCcccccccc
Confidence            3433333457899999876555544222211111 122222 2  4555555532      3488999988887666432


Q ss_pred             CcccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .. ......    ++++..   +.+.+.++..+.|..||+.+..
T Consensus        96 ~~-h~~~V~----~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~  134 (753)
T 3jro_A           96 AV-HSASVN----SVQWAPHEYGPLLLVASSDGKVSVVEFKENG  134 (753)
T ss_dssp             CC-CSSCEE----EEEECCGGGCSEEEEEETTSEEEEEECCSSS
T ss_pred             cC-CCCCeE----EEEECCCCCCCEEEEEeCCCcEEEEEeecCC
Confidence            11 011111    344442   5677777777899999998764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=91.58  E-value=4.6  Score=32.55  Aligned_cols=134  Identities=8%  Similarity=-0.012  Sum_probs=69.5

Q ss_pred             eEEeeCCCCceeEccCCCCCCccc-eeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDF-LLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV  159 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~-~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~  159 (316)
                      +..||+. ++...... +...... .......|.+|+.. +.+.++++|+. ++...+........-..++.. ++++++
T Consensus        85 v~~~d~~-g~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v  161 (300)
T 2qc5_A           85 IGKLSKK-GGFTEYPL-PQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWF  161 (300)
T ss_dssp             EEEECTT-SCEEEEEC-SSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEE
T ss_pred             EEEECCC-CCeEEecC-CCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEE
Confidence            5667777 55554422 2111111 12222346677765 35689999997 666544211111111123221 355776


Q ss_pred             EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781          160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG  233 (316)
Q Consensus       160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~  233 (316)
                      ...      ....+.+||. +++...+. .+.. .....    ++++. ++.+|+.....+.|..||+ ++.+..
T Consensus       162 ~~~------~~~~i~~~~~-~g~~~~~~-~~~~-~~~~~----~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~  222 (300)
T 2qc5_A          162 TEN------QNNSIGRITN-TGKLEEYP-LPTN-AAAPV----GITSGNDGALWFVEIMGNKIGRITT-TGEISE  222 (300)
T ss_dssp             EET------TTTEEEEECT-TCCEEEEE-CSST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred             Eec------CCCeEEEECC-CCcEEEee-CCCC-CCCcc----eEEECCCCCEEEEccCCCEEEEEcC-CCcEEE
Confidence            542      1245788888 66665542 1110 11112    45555 5789998766667899999 555444

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=91.53  E-value=3.2  Score=39.00  Aligned_cols=111  Identities=16%  Similarity=0.185  Sum_probs=68.1

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCC--------CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV--------WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~--------~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .++.||+.+..+.++.+|+.|++  |+.-+..+.        .....+.++.+++||+...       ...+..+|.+|+
T Consensus        69 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~-------dg~l~AlDa~TG  141 (689)
T 1yiq_A           69 VDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL-------DGRLEAIDAKTG  141 (689)
T ss_dssp             ETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------TSEEEEEETTTC
T ss_pred             ECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc-------CCEEEEEECCCC
Confidence            57898988766789999999886  664322111        0111234457888887642       245788998887


Q ss_pred             C--eeecCC-CCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--ccC
Q 040781          182 T--WEICQS-MPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WSG  233 (316)
Q Consensus       182 ~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~~  233 (316)
                      +  |+.-.. -+........    +..+.++.+|+..+     ..+.|.+||..+++  |+.
T Consensus       142 ~~~W~~~~~~~~~~~~~~~~----sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          142 QRAWSVDTRADHKRSYTITG----APRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             CEEEEEECCSCTTSCCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CEeeeecCcCCCCCCccccC----CcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            5  876532 1110011112    34567889888543     24689999998776  753

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=91.52  E-value=3.4  Score=34.05  Aligned_cols=132  Identities=8%  Similarity=0.019  Sum_probs=68.6

Q ss_pred             ceEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEcC-CceeeeecCCCCce--eecCCCCCCCCCCEEEEE--CC
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLSP-SKLSFSFDPLHLAW--HHVDAPRVWRTDPVVALV--GD  155 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~gg-~~~~~v~np~t~~w--~~lp~~~~~~~~~~~~~~--~~  155 (316)
                      .+..+|...++....-  +..........+ .|..+|+.+. .+.++++|+.+++.  ..+.....+.  ..++..  +.
T Consensus        21 ~v~~~d~~~~~~~~~~--~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~s~dg~   96 (331)
T 3u4y_A           21 RISFFSTDTLEILNQI--TLGYDFVDTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSM--ADVDITPDDQ   96 (331)
T ss_dssp             EEEEEETTTCCEEEEE--ECCCCEEEEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCC--CCEEECTTSS
T ss_pred             eEEEEeCcccceeeeE--EccCCcceEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCc--cceEECCCCC
Confidence            3677898877665431  211111122222 3456777663 67999999998874  2232221121  112222  34


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccce-EEEeeCCCC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGI-TVSFDPSTK  229 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~-i~~yD~~~~  229 (316)
                      .++ +....+   ....+.+||..+++-......    .....    ++++.  |..+|+.+...+. |..||+..+
T Consensus        97 ~l~-~~~~~~---~~~~i~v~d~~~~~~~~~~~~----~~~~~----~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           97 FAV-TVTGLN---HPFNMQSYSFLKNKFISTIPI----PYDAV----GIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             EEE-ECCCSS---SSCEEEEEETTTTEEEEEEEC----CTTEE----EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             EEE-EecCCC---CcccEEEEECCCCCeEEEEEC----CCCcc----ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            555 432110   112799999988765433111    11111    34444  3468887765556 888887643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=91.44  E-value=6.6  Score=34.10  Aligned_cols=56  Identities=16%  Similarity=0.234  Sum_probs=30.7

Q ss_pred             cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCc
Q 040781          171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                      ..+.+||..+++-...-..+.  .+..  ...++... +.+.+.++..+.|..||+.+++.
T Consensus       339 g~i~vwd~~~~~~~~~~~~~~--~~~~--~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          339 STVKIWDIKTGQCLQTLQGPN--KHQS--AVTCLQFN-KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             SCEEEEETTTCCEEEEECSTT--SCSS--CEEEEEEC-SSEEEEEETTSEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcEEEEEccCC--CCCC--CEEEEEEC-CCEEEEEeCCCeEEEEECCCCce
Confidence            347888887654322111111  1111  11134444 55666666778899999988763

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.30  E-value=1.8  Score=37.35  Aligned_cols=99  Identities=8%  Similarity=0.069  Sum_probs=55.0

Q ss_pred             eeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccce
Q 040781          124 LSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWL  202 (316)
Q Consensus       124 ~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~  202 (316)
                      .++.+|+.++.+..+...+.......++.. +.++++.++.+      ..+.++|..+++-...........+...  ..
T Consensus       102 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~------~~i~~~d~~~g~~~~~~~~~~~~~~~~~--v~  173 (433)
T 3bws_A          102 KLIALDKEGITHRFISRFKTGFQPKSVRFIDNTRLAIPLLED------EGMDVLDINSGQTVRLSPPEKYKKKLGF--VE  173 (433)
T ss_dssp             CEEECCBTTCSEEEEEEEECSSCBCCCEESSSSEEEEEBTTS------SSEEEEETTTCCEEEECCCHHHHTTCCE--EE
T ss_pred             EEEEECCCCCcceEEEEEcCCCCceEEEEeCCCeEEEEeCCC------CeEEEEECCCCeEeeecCcccccccCCc--ee
Confidence            678888877655443321111111122222 56777776532      3488999998876543222110011110  11


Q ss_pred             eEEE-eCCEEEEEecccceEEEeeCCCCC
Q 040781          203 SVAV-NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       203 ~~~~-~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ++++ .++.+++.++..+.|..||+.+.+
T Consensus       174 ~~~~~~~~~~~~s~~~d~~v~~~d~~~~~  202 (433)
T 3bws_A          174 TISIPEHNELWVSQMQANAVHVFDLKTLA  202 (433)
T ss_dssp             EEEEGGGTEEEEEEGGGTEEEEEETTTCC
T ss_pred             EEEEcCCCEEEEEECCCCEEEEEECCCce
Confidence            2333 367888888877899999998765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=91.21  E-value=8.3  Score=34.81  Aligned_cols=144  Identities=12%  Similarity=0.095  Sum_probs=72.3

Q ss_pred             CCEEEEEcC-CceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          113 STLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       113 ~~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      +..+...+. .+.+.+||..+++... ......... ..++.. +++.++.|+.+      ..+.+||..+++=..  .+
T Consensus       456 ~~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~d------g~i~iw~~~~~~~~~--~~  526 (615)
T 1pgu_A          456 QNYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVM------GKILLYDLQSREVKT--SR  526 (615)
T ss_dssp             SSEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--CC
T ss_pred             CCEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCC------CeEEEeeCCCCccee--Ee
Confidence            444444444 5789999998876532 111111111 122222 45566666532      348899988764322  11


Q ss_pred             CcccccCccccceeEEEe-----------CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEE
Q 040781          190 PAVLKDSAASTWLSVAVN-----------SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRL  258 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-----------~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L  258 (316)
                      .........    ++++.           ++.+.+.++..+.|..||+.+.. ..+..+...  ..... ......+++ 
T Consensus       527 ~~~h~~~v~----~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h--~~~v~-~l~~s~~~~-  597 (615)
T 1pgu_A          527 WAFRTSKIN----AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAH--KDGVN-NLLWETPST-  597 (615)
T ss_dssp             SCCCSSCEE----EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSS--TTCEE-EEEEEETTE-
T ss_pred             ecCCCCcee----EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcC--ccceE-EEEEcCCCC-
Confidence            110011111    34443           46666777777889999998753 222222221  01111 222344677 


Q ss_pred             EEEecCCCCCCcceeeEEEee
Q 040781          259 IAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       259 ~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ++.++...     .+.+|.++
T Consensus       598 l~s~~~d~-----~v~iw~~~  613 (615)
T 1pgu_A          598 LVSSGADA-----CIKRWNVV  613 (615)
T ss_dssp             EEEEETTS-----CEEEEEEC
T ss_pred             eEEecCCc-----eEEEEeee
Confidence            55554333     39999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=91.18  E-value=5.9  Score=33.05  Aligned_cols=143  Identities=12%  Similarity=0.067  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCceeeeecCCCCc-eeecCCCCCCCCCCE--EEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781          113 STLLYTLSPSKLSFSFDPLHLA-WHHVDAPRVWRTDPV--VALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC  186 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~-w~~lp~~~~~~~~~~--~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~  186 (316)
                      .+.+.+....+.+.+||..+++ .+.+...   .....  ++..   ..+.++.|+.+      ..+.+||..+++-...
T Consensus        94 D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~  164 (343)
T 3lrv_A           94 CNRLLLLYPGNQITILDSKTNKVLREIEVD---SANEIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIV  164 (343)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEEEEECC---CSSCEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEE
T ss_pred             CCeEEEEEccCceEEeecCCcceeEEeecC---CCCCEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEE
Confidence            3444444444456666666665 2222111   11111  1111   33455555532      3488999887765332


Q ss_pred             CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCC
Q 040781          187 QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTG  265 (316)
Q Consensus       187 ~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~  265 (316)
                      .....  .....    ++++. ++.+.+.|+..+.|..||+.+.+-. ...+... +..... .....-+|+.++.++.+
T Consensus       165 ~~~~~--~~~i~----~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~-h~~~v~-~l~fs~~g~~l~s~~~~  235 (343)
T 3lrv_A          165 HSAKS--DVEYS----SGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVD-EEAKIK-EVKFADNGYWMVVECDQ  235 (343)
T ss_dssp             ECCCS--SCCCC----EEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCC-TTSCEE-EEEECTTSSEEEEEESS
T ss_pred             EecCC--CCceE----EEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEecc-CCCCEE-EEEEeCCCCEEEEEeCC
Confidence            21111  11111    34444 5667777778889999999877621 0123221 001111 11123356666666522


Q ss_pred             CCCCcceeeEEEee
Q 040781          266 EAEDVKSLKIWQVN  279 (316)
Q Consensus       266 ~~~~~~~~~iw~l~  279 (316)
                            .+.+|.+.
T Consensus       236 ------~v~iwd~~  243 (343)
T 3lrv_A          236 ------TVVCFDLR  243 (343)
T ss_dssp             ------BEEEEETT
T ss_pred             ------eEEEEEcC
Confidence                  39999987

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=91.01  E-value=2.7  Score=35.22  Aligned_cols=143  Identities=11%  Similarity=0.058  Sum_probs=70.0

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPA  191 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~  191 (316)
                      +.++..++.+.+.+||..+++....-...... -..++.. +.++++.|+.+      ..+.+||..++.-... ..-  
T Consensus       155 ~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~-v~~~~~~~~~~~l~sg~~d------~~v~~wd~~~~~~~~~~~~h--  225 (340)
T 1got_B          155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGD-VMSLSLAPDTRLFVSGACD------ASAKLWDVREGMCRQTFTGH--  225 (340)
T ss_dssp             TEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEETT------SCEEEEETTTCSEEEEECCC--
T ss_pred             CcEEEEECCCcEEEEECCCCcEEEEEcCCCCc-eEEEEECCCCCEEEEEeCC------CcEEEEECCCCeeEEEEcCC--
Confidence            44433344578999998887653321111000 0122222 34556666532      3488898877642221 110  


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                        ...    ..++++. ++.+.+.++..+.|..||+.+..-  +..+..+....... .....-+|++++.|+...    
T Consensus       226 --~~~----v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~~~~~~v~-~~~~s~~g~~l~~g~~d~----  292 (340)
T 1got_B          226 --ESD----INAICFFPNGNAFATGSDDATCRLFDLRADQE--LMTYSHDNIICGIT-SVSFSKSGRLLLAGYDDF----  292 (340)
T ss_dssp             --SSC----EEEEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEE-EEEECTTSSEEEEEETTS----
T ss_pred             --cCC----EEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE--EEEEccCCcccceE-EEEECCCCCEEEEECCCC----
Confidence              111    1134444 456677777778899999987541  11111110001111 111233667777775433    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.+|.+.
T Consensus       293 -~i~vwd~~  300 (340)
T 1got_B          293 -NCNVWDAL  300 (340)
T ss_dssp             -EEEEEETT
T ss_pred             -eEEEEEcc
Confidence             38888875

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=90.96  E-value=7.3  Score=36.98  Aligned_cols=161  Identities=10%  Similarity=0.050  Sum_probs=83.1

Q ss_pred             eEEeeCCCCceeEccCCC---CC-CccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE---CC
Q 040781           83 AHAYDARSHVWIEIKNNQ---PS-SFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV---GD  155 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~---~~-~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~---~~  155 (316)
                      +..||+..+++......+   .+ ...........|.|++-...+.++++|+.++++..+............+..   ++
T Consensus       471 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g  550 (781)
T 3v9f_A          471 VFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKG  550 (781)
T ss_dssp             EEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTS
T ss_pred             eEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCC
Confidence            455777776665542101   00 011112222345556544324699999999988876532222222222222   34


Q ss_pred             EEEEEcCcCCCCCCCcEE-EEEeCCCCCeeecC---CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          156 KVVVAGGACDFEDDPLAV-EMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v-~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .+++...        ..+ ..||+.+++++...   .+|.  .. ..    +++.. +|.+|+.+..  .|..||+.+++
T Consensus       551 ~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~--~~-i~----~i~~d~~g~lW~~t~~--Gl~~~~~~~~~  613 (781)
T 3v9f_A          551 QMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPN--TH-IR----AISEDKNGNIWASTNT--GISCYITSKKC  613 (781)
T ss_dssp             CEEEEET--------TEEEEESCTTTCCCEEECGGGTCSC--CC-CC----EEEECSSSCEEEECSS--CEEEEETTTTE
T ss_pred             CEEEEEC--------CCceEEECCCCCcEEEccccCCCCC--ce-EE----EEEECCCCCEEEEcCC--ceEEEECCCCc
Confidence            5555431        235 77888888876653   2332  11 11    44444 5778887643  57999999888


Q ss_pred             ccCCCc---CCCCCccccee-eeeeEeeCCEEEEEecC
Q 040781          231 WSGPFH---LRQFDHEKKVF-YSVITFANDRLIAVGLT  264 (316)
Q Consensus       231 W~~~~~---l~~~~~~~~~~-~~~l~~~~g~L~v~g~~  264 (316)
                      +..+..   ++..    ... .+.+...+|+|++.+..
T Consensus       614 ~~~~~~~dGl~~~----~f~~~~~~~~~~G~l~~g~~~  647 (781)
T 3v9f_A          614 FYTYDHSNNIPQG----SFISGCVTKDHNGLIYFGSIN  647 (781)
T ss_dssp             EEEECGGGTCCSS----CEEEEEEEECTTSCEEEEETT
T ss_pred             eEEecccCCcccc----ccccCceEECCCCEEEEECCC
Confidence            665432   2211    111 22333446777776643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=90.93  E-value=3.9  Score=33.91  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=54.2

Q ss_pred             CEEEEEcCCceeeeecCCCCc--eeecCCCCCCCCCC--EEEE-----ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781          114 TLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVWRTDP--VVAL-----VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWE  184 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~~~~~--~~~~-----~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~  184 (316)
                      ..++..+..+.+.+||..+++  ...+..........  .++.     .+.+.++.|+.      ...+.+||..+++=.
T Consensus       130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------d~~i~i~d~~~~~~~  203 (357)
T 3i2n_A          130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYD------NGDIKLFDLRNMALR  203 (357)
T ss_dssp             CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEET------TSEEEEEETTTTEEE
T ss_pred             cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEcc------CCeEEEEECccCcee
Confidence            344433345789999988865  33332222211112  1221     24455555542      246889998876532


Q ss_pred             ecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCC
Q 040781          185 ICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .....    .....    ++++.    ++.+.+.++..+.|..||+.+..
T Consensus       204 ~~~~~----~~~v~----~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          204 WETNI----KNGVC----SLEFDRKDISMNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             EEEEC----SSCEE----EEEESCSSSSCCEEEEEESTTEEEEEEEEEEE
T ss_pred             eecCC----CCceE----EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC
Confidence            22111    11111    44454    45666666677789999987654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=90.90  E-value=3.2  Score=34.07  Aligned_cols=104  Identities=11%  Similarity=-0.017  Sum_probs=52.4

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      ..++..+..+.+.+||..+++............. ..++.. +.+.++.++.+      ..+.+||..+++-...-.. .
T Consensus       110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~-~  182 (337)
T 1gxr_A          110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQG-H  182 (337)
T ss_dssp             SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECC-C
T ss_pred             CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeec-c
Confidence            4444444457899999988764332211111111 122222 34455555422      3488999887654322111 0


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        .....    ++++. ++.+.+.++..+.|..||+.+.+
T Consensus       183 --~~~i~----~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          183 --TDGAS----CIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             --SSCEE----EEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             --cCceE----EEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence              11111    33443 45555666677789999998765

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=90.90  E-value=5.4  Score=32.11  Aligned_cols=134  Identities=10%  Similarity=-0.024  Sum_probs=69.9

Q ss_pred             eEEeeCCCCceeEccCCCCC-CccceeeeecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEE
Q 040781           83 AHAYDARSHVWIEIKNNQPS-SFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVV  159 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~-~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~  159 (316)
                      +..||+. ++...+.. +.. ...........+.+|+.. +.+.++++|+. ++...+..+.....-..++.. ++++++
T Consensus        43 v~~~~~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v  119 (300)
T 2qc5_A           43 ISSLDQS-GRIKEFEV-PTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWF  119 (300)
T ss_dssp             EEEECTT-SCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEE
T ss_pred             EEEECCC-CceEEEEC-CCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEE
Confidence            5668877 56555422 211 111112223346667765 35789999998 776654321111111233332 456777


Q ss_pred             EcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781          160 AGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG  233 (316)
Q Consensus       160 ~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~  233 (316)
                      ...      ....+..||.. ++..... ++.. .....    ++++. ++.+|+.....+.|..||+ ++++..
T Consensus       120 ~~~------~~~~i~~~~~~-g~~~~~~-~~~~-~~~~~----~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~  180 (300)
T 2qc5_A          120 TQL------NGDRIGKLTAD-GTIYEYD-LPNK-GSYPA----FITLGSDNALWFTENQNNSIGRITN-TGKLEE  180 (300)
T ss_dssp             EET------TTTEEEEECTT-SCEEEEE-CSST-TCCEE----EEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred             Ecc------CCCeEEEECCC-CCEEEcc-CCCC-CCCce----eEEECCCCCEEEEecCCCeEEEECC-CCcEEE
Confidence            642      12457788877 5554332 1110 11111    44443 4678988765668899999 555444

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=90.86  E-value=6.3  Score=32.85  Aligned_cols=134  Identities=12%  Similarity=0.209  Sum_probs=63.5

Q ss_pred             eEEeeCCCCceeEccCCCCCCcc---ceeeeec-CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCE
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFD---FLLRSSH-STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDK  156 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~---~~~~~s~-~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~  156 (316)
                      +..||...+++..+.  .+..+.   .....+. +..++..+..+.+.+||..++++............ ..+... +.+
T Consensus        32 v~i~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  109 (372)
T 1k8k_C           32 VHIYEKSGNKWVQVH--ELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEK  109 (372)
T ss_dssp             EEEEEEETTEEEEEE--EEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSS
T ss_pred             EEEEeCCCCcEEeee--eecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCC
Confidence            666777776543332  111111   1222232 34544444457899999988876543211111111 122222 344


Q ss_pred             EEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCC
Q 040781          157 VVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPST  228 (316)
Q Consensus       157 v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~  228 (316)
                      .++.|+.+      ..+.+||..++. |........  .+..  ...++++. ++.+.+.++..+.|..||+..
T Consensus       110 ~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~~--~~~~--~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  173 (372)
T 1k8k_C          110 KFAVGSGS------RVISICYFEQENDWWVCKHIKK--PIRS--TVLSLDWHPNSVLLAAGSCDFKCRIFSAYI  173 (372)
T ss_dssp             EEEEEETT------SSEEEEEEETTTTEEEEEEECT--TCCS--CEEEEEECTTSSEEEEEETTSCEEEEECCC
T ss_pred             EEEEEeCC------CEEEEEEecCCCcceeeeeeec--ccCC--CeeEEEEcCCCCEEEEEcCCCCEEEEEccc
Confidence            55555422      336777766543 333221111  1111  11134443 455666666777899999753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.75  E-value=3.2  Score=35.15  Aligned_cols=105  Identities=13%  Similarity=0.109  Sum_probs=49.6

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCC-CCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRV-WRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~-~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .+.++..+..+.+.+||..+++......... .....  .++.. +++.++.|+.+      ..+.++|..+++-...-.
T Consensus       105 d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~d------g~v~iwd~~~~~~~~~~~  178 (357)
T 4g56_B          105 EKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKD------FSVKVWDLSQKAVLKSYN  178 (357)
T ss_dssp             TTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEETTTTEEEEEEC
T ss_pred             CCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEEEEc
Confidence            3555555556789999998876543322111 11112  22222 34555555432      348889988765322211


Q ss_pred             CCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .     +...  ..++++.  +..+++.++..+.|..||+.+.+
T Consensus       179 ~-----h~~~--v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~  215 (357)
T 4g56_B          179 A-----HSSE--VNCVAACPGKDTIFLSCGEDGRILLWDTRKPK  215 (357)
T ss_dssp             C-----CSSC--EEEEEECTTCSSCEEEEETTSCEEECCTTSSS
T ss_pred             C-----CCCC--EEEEEEccCCCceeeeeccCCceEEEECCCCc
Confidence            1     1100  1133333  33466677777789999998765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=90.68  E-value=7.8  Score=33.61  Aligned_cols=104  Identities=9%  Similarity=-0.065  Sum_probs=55.5

Q ss_pred             EEEEcC-CceeeeecCCCCceeecCCCCC-CCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          116 LYTLSP-SKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       116 l~~~gg-~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +++.|+ .+.+.+||..+++...+-.... ...-..++..  +...++.|+.+      ..+.++|..++.-+.+.....
T Consensus       134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~  207 (435)
T 4e54_B          134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSME------GTTRLQDFKGNILRVFASSDT  207 (435)
T ss_dssp             CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSS------SCEEEEETTSCEEEEEECCSS
T ss_pred             EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCC------CEEEEeeccCCceeEEeccCC
Confidence            344553 4789999998876433211111 1111234432  34455555532      348889988766544422111


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       ......    ++.+. ++.+.+.++..+.|..||+..+.
T Consensus       208 -~~~~~~----~~~~~~~~~~l~~g~~dg~i~~wd~~~~~  242 (435)
T 4e54_B          208 -INIWFC----SLDVSASSRMVVTGDNVGNVILLNMDGKE  242 (435)
T ss_dssp             -CSCCCC----CEEEETTTTEEEEECSSSBEEEEESSSCB
T ss_pred             -CCccEE----EEEECCCCCEEEEEeCCCcEeeeccCcce
Confidence             011111    33343 56677777777889999987654

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=90.54  E-value=5.4  Score=33.30  Aligned_cols=105  Identities=10%  Similarity=0.032  Sum_probs=53.6

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      .+.+++.| ..+.+.+||..++.... +.... .. -..++.. +++.++.|+.+      ..+.+||..+++-...-..
T Consensus       195 ~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~-~~-v~~v~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~  266 (340)
T 1got_B          195 DTRLFVSGACDASAKLWDVREGMCRQTFTGHE-SD-INAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCSEEEEECCCS-SC-EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECC
T ss_pred             CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCc-CC-EEEEEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEEEcc
Confidence            34444554 34789999988765432 21100 00 0122222 34555555532      3488899877642211111


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +. ......    ++++. ++.+.+.++..+.|..||..+..
T Consensus       267 ~~-~~~~v~----~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  303 (340)
T 1got_B          267 DN-IICGIT----SVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             TT-CCSCEE----EEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CC-cccceE----EEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence            11 000111    33333 56677777777889999987654

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=90.52  E-value=3.7  Score=38.49  Aligned_cols=110  Identities=15%  Similarity=0.118  Sum_probs=68.2

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCCC--------CCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRVW--------RTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~~--------~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .++.||+.+..+.++.+|+.|++  |+.-+.....        ......++.+.+||+...       ...+..+|..|+
T Consensus        76 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-------dg~l~alD~~tG  148 (677)
T 1kb0_A           76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATG  148 (677)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTC
T ss_pred             ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC-------CCEEEEEECCCC
Confidence            57889988766789999999885  6543321110        112234557888888642       245888998877


Q ss_pred             C--eeecCC-CCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781          182 T--WEICQS-MPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS  232 (316)
Q Consensus       182 ~--W~~~~~-~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~  232 (316)
                      +  |+.-.. -+........    +..+.++.+|+...     ..+.|.+||..+++  |+
T Consensus       149 ~~~W~~~~~~~~~~~~~~~~----~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~  205 (677)
T 1kb0_A          149 KEVWHQNTFEGQKGSLTITG----APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (677)
T ss_dssp             CEEEEEETTTTCCSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             CEEeeecCCcCcCcCccccc----CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence            5  876432 1110011112    34567899988654     25689999998775  65

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=90.41  E-value=7.7  Score=33.10  Aligned_cols=23  Identities=13%  Similarity=0.170  Sum_probs=17.6

Q ss_pred             CCEEEEEecccceEEEeeCCCCC
Q 040781          208 SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       208 ~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ++.+.+.++..+.|..||+.+..
T Consensus       258 ~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          258 YGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             TTEEEEEEETTSCEEEEETTTCC
T ss_pred             CCCEEEEEcCCCeEEEEECCCCc
Confidence            46666777777889999998765

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=90.37  E-value=6.4  Score=32.08  Aligned_cols=136  Identities=9%  Similarity=-0.019  Sum_probs=79.6

Q ss_pred             CceEEeeCCCCceeE-ccCCCCCCccceeeeecCCEEEEEc-CCceeeeecCCCCce-eecCCCCCCCCCCEEEEECCEE
Q 040781           81 TTAHAYDARSHVWIE-IKNNQPSSFDFLLRSSHSTLLYTLS-PSKLSFSFDPLHLAW-HHVDAPRVWRTDPVVALVGDKV  157 (316)
Q Consensus        81 ~~~~~~d~~~~~w~~-~~~~~~~~~~~~~~~s~~~~l~~~g-g~~~~~v~np~t~~w-~~lp~~~~~~~~~~~~~~~~~v  157 (316)
                      +.+..+|+..++-.. ++. +..++.. ..+..++.||+.. ..+.++++|+.|.+- ..+|..  .....+++.-+.++
T Consensus        44 s~v~~iD~~tg~v~~~i~l-~~~~fge-Gi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g--~~~g~glt~Dg~~l  119 (266)
T 2iwa_A           44 SSVRQVALQTGKVENIHKM-DDSYFGE-GLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ--MKDGWGLATDGKIL  119 (266)
T ss_dssp             CEEEEEETTTCCEEEEEEC-CTTCCEE-EEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC--SSSCCEEEECSSSE
T ss_pred             CEEEEEECCCCCEEEEEec-CCCcceE-EEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC--CCCeEEEEECCCEE
Confidence            447789998876543 321 2111111 1222467889877 458999999998754 445422  12334565556778


Q ss_pred             EEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc-ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          158 VVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA-VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       158 ~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      |+..|       ...+.++|+++.+=...-.... +.+....   ..+...++.+|+.....+.|.+.|+.+++
T Consensus       120 ~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~~---nele~~dg~lyvn~~~~~~V~vID~~tg~  183 (266)
T 2iwa_A          120 YGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIRL---NELEYINGEVWANIWQTDCIARISAKDGT  183 (266)
T ss_dssp             EEECS-------SSEEEEECTTTCCEEEEEECEETTEECCCE---EEEEEETTEEEEEETTSSEEEEEETTTCC
T ss_pred             EEECC-------CCeEEEEECCCCcEEEEEEECCCCcccccc---eeEEEECCEEEEecCCCCeEEEEECCCCc
Confidence            87643       2468899998865322111100 0011000   03444588999888777899999999876

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=90.15  E-value=3.2  Score=34.02  Aligned_cols=140  Identities=9%  Similarity=0.012  Sum_probs=67.5

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV  192 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~  192 (316)
                      ..++..+..+.+.+||..+++....-...... -..++.. +.+.++.++.      ...+.+||..+++-......+. 
T Consensus       154 ~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~~------dg~i~~~d~~~~~~~~~~~~~~-  225 (337)
T 1gxr_A          154 KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG-ASCIDISNDGTKLWTGGL------DNTVRSWDLREGRQLQQHDFTS-  225 (337)
T ss_dssp             SEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECSS-
T ss_pred             CEEEEEeCCCcEEEEeCCCCceeeeeecccCc-eEEEEECCCCCEEEEEec------CCcEEEEECCCCceEeeecCCC-
Confidence            44444434578999998887643321111110 1122222 3444445542      2458899988764322211111 


Q ss_pred             cccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcc
Q 040781          193 LKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVK  271 (316)
Q Consensus       193 ~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~  271 (316)
                         ...    .+++. ++.+.+.++..+.|..||+.+..-..   +...  ..... ......++++++.++...     
T Consensus       226 ---~v~----~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~---~~~~--~~~v~-~~~~~~~~~~l~~~~~dg-----  287 (337)
T 1gxr_A          226 ---QIF----SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ---LHLH--ESCVL-SLKFAYCGKWFVSTGKDN-----  287 (337)
T ss_dssp             ---CEE----EEEECTTSSEEEEEETTSCEEEEETTSSCEEE---ECCC--SSCEE-EEEECTTSSEEEEEETTS-----
T ss_pred             ---ceE----EEEECCCCCEEEEEcCCCcEEEEECCCCCeEE---EcCC--cccee-EEEECCCCCEEEEecCCC-----
Confidence               111    33333 45556666666788999998765221   2111  01111 111223556656554322     


Q ss_pred             eeeEEEee
Q 040781          272 SLKIWQVN  279 (316)
Q Consensus       272 ~~~iw~l~  279 (316)
                      .+.+|.++
T Consensus       288 ~i~~~~~~  295 (337)
T 1gxr_A          288 LLNAWRTP  295 (337)
T ss_dssp             EEEEEETT
T ss_pred             cEEEEECC
Confidence            38888876

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=89.90  E-value=5.3  Score=34.15  Aligned_cols=104  Identities=9%  Similarity=-0.054  Sum_probs=52.7

Q ss_pred             EEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CCCc
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SMPA  191 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~p~  191 (316)
                      +++..+..+.+.+||..+++... +........-..++.. +++.++.++.      ...+.+||..+++-...- ....
T Consensus       146 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~  219 (402)
T 2aq5_A          146 VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCR------DKRVRVIEPRKGTVVAEKDRPHE  219 (402)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEET------TSEEEEEETTTTEEEEEEECSSC
T ss_pred             EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEec------CCcEEEEeCCCCceeeeeccCCC
Confidence            43333345789999998876543 2100001111122222 3445555542      246899998876532211 1111


Q ss_pred             ccccCccccceeEEE-eCCEEEEEe---cccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAV-NSRQLYVTE---KYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~-~~~~~y~~~---~~~~~i~~yD~~~~~  230 (316)
                        .....    .++. .++.+.+.+   ...+.|..||+.+..
T Consensus       220 --~~~~~----~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          220 --GTRPV----HAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             --SSSCC----EEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             --CCcce----EEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence              11011    2333 356666666   466789999998754

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=89.85  E-value=3.6  Score=35.58  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=55.9

Q ss_pred             cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      .+++ +.+|-.+.+++||..|++...+-........ .+++.. +++.++.|+.+      ..+.++|..+++-...  +
T Consensus       115 ~~n~-lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~D------g~v~iWd~~~~~~~~~--~  185 (420)
T 4gga_A          115 SGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS------AEVQLWDVQQQKRLRN--M  185 (420)
T ss_dssp             TTSE-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEE--E
T ss_pred             CCCE-EEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECC------CeEEEEEcCCCcEEEE--E
Confidence            3454 4455346899999999987654222221111 122222 35666666533      4488999887652221  1


Q ss_pred             CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .   .+...  ..++.. ++.+.+.++..+.+..+|.....
T Consensus       186 ~---~h~~~--v~~~s~-~~~~l~sgs~d~~i~~~d~~~~~  220 (420)
T 4gga_A          186 T---SHSAR--VGSLSW-NSYILSSGSRSGHIHHHDVRVAE  220 (420)
T ss_dssp             C---CCSSC--EEEEEE-ETTEEEEEETTSEEEEEETTSSS
T ss_pred             e---CCCCc--eEEEee-CCCEEEEEeCCCceeEeeecccc
Confidence            0   11111  112333 34555666677788889987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=89.71  E-value=3.3  Score=34.94  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=54.5

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCC-CCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAP-RVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~-~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .+.+...+..+.+.+||..+++....... .......  .++.. +++.++.|+.+      ..+.++|..+++=..  .
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d------~~i~iwd~~~~~~~~--~  164 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKD------ICIKVWDLAQQVVLS--S  164 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEE--E
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCC------CeEEEEECCCCcEEE--E
Confidence            35544434457899999988765332111 1111111  22222 34555555432      348889888764221  1


Q ss_pred             CCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +.   .+...  ...+++.  +..+++.++..+.|..||+.+.+
T Consensus       165 ~~---~h~~~--V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~  203 (344)
T 4gqb_B          165 YR---AHAAQ--VTCVAASPHKDSVFLSCSEDNRILLWDTRCPK  203 (344)
T ss_dssp             EC---CCSSC--EEEEEECSSCTTEEEEEETTSCEEEEETTSSS
T ss_pred             Ec---CcCCc--eEEEEecCCCCCceeeeccccccccccccccc
Confidence            10   11111  1133333  34567777777889999998765

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=89.41  E-value=8.2  Score=31.95  Aligned_cols=102  Identities=12%  Similarity=0.089  Sum_probs=54.4

Q ss_pred             CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +..++.| ..+.+.+||..+++... +.....+  -..++.. +.++++.|+.+      ..+.+||..+..-...  +.
T Consensus       176 g~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~spd~~~l~s~s~d------g~i~iwd~~~~~~~~~--~~  245 (321)
T 3ow8_A          176 GKYLASGAIDGIINIFDIATGKLLHTLEGHAMP--IRSLTFSPDSQLLVTASDD------GYIKIYDVQHANLAGT--LS  245 (321)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSC--CCEEEECTTSCEEEEECTT------SCEEEEETTTCCEEEE--EC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc--eeEEEEcCCCCEEEEEcCC------CeEEEEECCCcceeEE--Ec
Confidence            4434444 34789999998876432 3211111  1123332 34566666532      3488999877653321  10


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                         .+..  ....+++. ++.+.+.++..+.|..||+.+.+
T Consensus       246 ---~h~~--~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~  281 (321)
T 3ow8_A          246 ---GHAS--WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT  281 (321)
T ss_dssp             ---CCSS--CEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ---CCCC--ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCE
Confidence               0110  01134444 45666677777889999998764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=89.38  E-value=9.9  Score=32.87  Aligned_cols=139  Identities=17%  Similarity=0.171  Sum_probs=65.8

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC--EEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +.++..+..+.+.+||..++.-.............  .+.. +.+.++.|+.      ...+.+||..+++=...  +..
T Consensus       224 ~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~------dg~i~vwd~~~~~~~~~--~~~  294 (435)
T 1p22_A          224 GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASG------DRTIKVWNTSTCEFVRT--LNG  294 (435)
T ss_dssp             TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEET------TSEEEEEETTTCCEEEE--EEC
T ss_pred             CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeC------CCeEEEEECCcCcEEEE--EcC
Confidence            44333334467888888776532111000111111  2223 3344444432      24588999887642211  110


Q ss_pred             ccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcc
Q 040781          192 VLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVK  271 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~  271 (316)
                       ......    .+... +.+.+.++..+.|..||+.++.-  +..+...  .....  .+ ..++..++.|+...     
T Consensus       295 -~~~~v~----~~~~~-~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~h--~~~v~--~~-~~~~~~l~sg~~dg-----  356 (435)
T 1p22_A          295 -HKRGIA----CLQYR-DRLVVSGSSDNTIRLWDIECGAC--LRVLEGH--EELVR--CI-RFDNKRIVSGAYDG-----  356 (435)
T ss_dssp             -CSSCEE----EEEEE-TTEEEEEETTSCEEEEETTTCCE--EEEECCC--SSCEE--EE-ECCSSEEEEEETTS-----
T ss_pred             -CCCcEE----EEEeC-CCEEEEEeCCCeEEEEECCCCCE--EEEEeCC--cCcEE--EE-EecCCEEEEEeCCC-----
Confidence             011111    34444 45566666777899999987641  1112211  01111  22 22566666665433     


Q ss_pred             eeeEEEee
Q 040781          272 SLKIWQVN  279 (316)
Q Consensus       272 ~~~iw~l~  279 (316)
                      .+.+|.+.
T Consensus       357 ~i~vwd~~  364 (435)
T 1p22_A          357 KIKVWDLV  364 (435)
T ss_dssp             CEEEEEHH
T ss_pred             cEEEEECC
Confidence            38889886

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=89.15  E-value=10  Score=32.76  Aligned_cols=94  Identities=11%  Similarity=-0.015  Sum_probs=51.3

Q ss_pred             ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781          123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST  200 (316)
Q Consensus       123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~  200 (316)
                      ..+++||..+++...+......  ...++..  +.+++..+..+    ....+.++|..+++.+.+...+.    ...  
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~~--~~~~~~spdg~~la~~~~~~----g~~~i~~~d~~~~~~~~l~~~~~----~~~--  270 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPRH--NGAPAFSPDGSKLAFALSKT----GSLNLYVMDLASGQIRQVTDGRS----NNT--  270 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSSC--EEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEECCCCSS----CEE--
T ss_pred             cEEEEEECCCCcEEEeecCCCc--ccCEEEcCCCCEEEEEEecC----CCceEEEEECCCCCEEeCcCCCC----ccc--
Confidence            5899999999887766432211  1122222  23455444321    23568899999887665533211    111  


Q ss_pred             ceeEEEe--CCEEEEEeccc--ceEEEeeCCCCC
Q 040781          201 WLSVAVN--SRQLYVTEKYS--GITVSFDPSTKG  230 (316)
Q Consensus       201 ~~~~~~~--~~~~y~~~~~~--~~i~~yD~~~~~  230 (316)
                        .++..  |..+++.....  ..|+.+|+.++.
T Consensus       271 --~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          271 --EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             --EEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             --ceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence              23332  34455554322  268888998776

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=89.08  E-value=9.6  Score=32.29  Aligned_cols=143  Identities=8%  Similarity=0.008  Sum_probs=69.4

Q ss_pred             cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .++.+++.+..+.+.+||..+++....-..... .-..++.. +.+.++.++.+      ..+.+||..+++-...-.. 
T Consensus       216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~-  287 (425)
T 1r5m_A          216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFYG-  287 (425)
T ss_dssp             ETTEEEEECGGGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEECC-
T ss_pred             CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEecC-
Confidence            346655544457899999887643221111110 01122222 34455555422      3488888776542221110 


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED  269 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~  269 (316)
                      .  .....    +++.. ++ +++.++..+.|..||+.+.+-  +..+...  ..... ......+++++++++...   
T Consensus       288 ~--~~~i~----~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~--~~~~~~~--~~~i~-~~~~s~~~~~l~~~~~dg---  352 (425)
T 1r5m_A          288 H--SQSIV----SASWVGDD-KVISCSMDGSVRLWSLKQNTL--LALSIVD--GVPIF-AGRISQDGQKYAVAFMDG---  352 (425)
T ss_dssp             C--SSCEE----EEEEETTT-EEEEEETTSEEEEEETTTTEE--EEEEECT--TCCEE-EEEECTTSSEEEEEETTS---
T ss_pred             C--CccEE----EEEECCCC-EEEEEeCCCcEEEEECCCCcE--eEecccC--CccEE-EEEEcCCCCEEEEEECCC---
Confidence            0  11111    44444 44 666666778899999977652  1111111  01111 111223566666665333   


Q ss_pred             cceeeEEEee
Q 040781          270 VKSLKIWQVN  279 (316)
Q Consensus       270 ~~~~~iw~l~  279 (316)
                        .+.+|.++
T Consensus       353 --~i~i~~~~  360 (425)
T 1r5m_A          353 --QVNVYDLK  360 (425)
T ss_dssp             --CEEEEECH
T ss_pred             --eEEEEECC
Confidence              38899887

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.91  E-value=4.7  Score=34.34  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=47.6

Q ss_pred             CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CCCcc-cccCcc
Q 040781          121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SMPAV-LKDSAA  198 (316)
Q Consensus       121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~p~~-~~~~~~  198 (316)
                      ..+.+.+||..+++....-.............-+++.++.|+.+      ..+.+||..+..-..-. ..... ..+...
T Consensus        86 ~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~  159 (380)
T 3iz6_a           86 QDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLD------SACSIFNLSSQADRDGNMPVSRVLTGHKGY  159 (380)
T ss_dssp             TTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSS------SCCEEEECCCCSSCCCSSTTCCBCCCCSSC
T ss_pred             CCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCC------CcEEEEECCCCccccCCccceeeccCCCcc
Confidence            44789999998876433211111111111111245566666643      34677877653321110 00000 011100


Q ss_pred             ccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          199 STWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       199 ~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        ...+...  ++...+.++..+.|..||+.++.
T Consensus       160 --v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~  191 (380)
T 3iz6_a          160 --ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ  191 (380)
T ss_dssp             --CCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred             --eEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence              0011111  23445566677789999998775

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=88.88  E-value=6  Score=32.80  Aligned_cols=102  Identities=17%  Similarity=0.085  Sum_probs=53.1

Q ss_pred             CEEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +.+++.+ ..+.+.+||..+++... +...+..  ...++.. +.+.++.|+.      ...+.+||..++.=...-.. 
T Consensus        92 ~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~--~~~~~~spdg~~l~~g~~------dg~v~i~~~~~~~~~~~~~~-  162 (321)
T 3ow8_A           92 LPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD--AWTLAFSPDSQYLATGTH------VGKVNIFGVESGKKEYSLDT-  162 (321)
T ss_dssp             SSEEEEEETTSEEEEEETTTTEEEEEEECCTTC--CCCEEECTTSSEEEEECT------TSEEEEEETTTCSEEEEEEC-
T ss_pred             CCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc--EEEEEECCCCCEEEEEcC------CCcEEEEEcCCCceeEEecC-
Confidence            4444444 34789999998876432 2211111  1122222 3455555542      34588888877653221100 


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  .....    ++++. ++.+.+.++..+.|..||+.+++
T Consensus       163 ~--~~~v~----~~~~spdg~~lasg~~dg~i~iwd~~~~~  197 (321)
T 3ow8_A          163 R--GKFIL----SIAYSPDGKYLASGAIDGIINIFDIATGK  197 (321)
T ss_dssp             S--SSCEE----EEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             C--CceEE----EEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            0  00111    33333 45666677777889999998765

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=88.77  E-value=3.6  Score=34.73  Aligned_cols=104  Identities=12%  Similarity=-0.002  Sum_probs=53.1

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ  187 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~  187 (316)
                      .+..++.| ..+.+.+||..+++....-.-   ....  .++..  +..+++.|+.+      ..+.++|..+++-...-
T Consensus       138 dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~---h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~  208 (344)
T 4gqb_B          138 SGTQAVSGSKDICIKVWDLAQQVVLSSYRA---HAAQVTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQI  208 (344)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEEC
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEcC---cCCceEEEEecCCCCCceeeeccc------cccccccccccceeeee
Confidence            34444454 347899999988765332111   1111  12221  23455555432      34889998876533221


Q ss_pred             CCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          188 SMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .... ......    +++..  ++.+.+.++..+.|..||+.+.+
T Consensus       209 ~~~~-~~~~~~----~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~  248 (344)
T 4gqb_B          209 GCSA-PGYLPT----SLAWHPQQSEVFVFGDENGTVSLVDTKSTS  248 (344)
T ss_dssp             C-----CCCEE----EEEECSSCTTEEEEEETTSEEEEEESCC--
T ss_pred             ecce-eeccce----eeeecCCCCcceEEeccCCcEEEEECCCCc
Confidence            1101 011111    33333  56677777777889999998764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=88.65  E-value=2.9  Score=35.85  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=54.5

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .+..++.| ..+.+.+||..+++....-...... -..++.. +++.++.|+.      ...+.++|..+++-...-...
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~-v~~~~~~p~~~~l~s~s~------d~~v~iwd~~~~~~~~~~~~~  206 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD-IYSLDYFPSGDKLVSGSG------DRTVRIWDLRTGQCSLTLSIE  206 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEECS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC-EEEEEEcCCCCEEEEecC------CCcEEEEECCCCeeEEEEEcC
Confidence            34444444 4578999999887653321111100 0122222 2334444442      255889998877643321111


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .    ...    .+++.  ++.+.+.++..+.|..||+.++.
T Consensus       207 ~----~v~----~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~  240 (393)
T 1erj_A          207 D----GVT----TVAVSPGDGKYIAAGSLDRAVRVWDSETGF  240 (393)
T ss_dssp             S----CEE----EEEECSTTCCEEEEEETTSCEEEEETTTCC
T ss_pred             C----CcE----EEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            1    111    33333  56777777777889999998765

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=88.62  E-value=8.3  Score=31.79  Aligned_cols=112  Identities=8%  Similarity=0.019  Sum_probs=60.8

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QS  188 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~  188 (316)
                      ..|.||+.+ ..+.+++||+.+++...+.... ...-..++.. ++++++.......  ....+.+||..++.-+.+ ..
T Consensus        54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~d~~~~~~~~~~~~  130 (333)
T 2dg1_A           54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSH-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAATENGDNLQDIIED  130 (333)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECS-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEECTTSCSCEEEECS
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCC-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEEeCCCCEEEEEEcc
Confidence            345577665 3468999999998877653111 1111123332 4567666421100  124688899888765532 21


Q ss_pred             CCcccccCccccceeEEEe-CCEEEEEecc------cceEEEeeCCCCCcc
Q 040781          189 MPAVLKDSAASTWLSVAVN-SRQLYVTEKY------SGITVSFDPSTKGWS  232 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~------~~~i~~yD~~~~~W~  232 (316)
                      ...  .....    ++++. ++.+|+....      .+.|+.+|+.+++..
T Consensus       131 ~~~--~~~~~----~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~  175 (333)
T 2dg1_A          131 LST--AYCID----DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT  175 (333)
T ss_dssp             SSS--CCCEE----EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE
T ss_pred             Ccc--CCccc----ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEE
Confidence            111  11111    34444 5678886542      356899998876644

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=88.33  E-value=5.1  Score=33.33  Aligned_cols=184  Identities=10%  Similarity=-0.003  Sum_probs=85.0

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcC---CceeeeecCCCCceeecCCCCC-CCCCCEEEEE--CCE
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSP---SKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALV--GDK  156 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg---~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~--~~~  156 (316)
                      ++.+|...++...+...........+..+..|.||+.+.   .+.+.+||..+++.+.+..... ...-..++..  +..
T Consensus        20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~   99 (347)
T 3hfq_A           20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQL   99 (347)
T ss_dssp             EEEEETTTTEEEEEEEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTE
T ss_pred             EEEEcCCCCeEEEeeeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCE
Confidence            455777766665432101001112233344455777653   4789999998877665532111 1111233333  345


Q ss_pred             EEEEcCcCCCCCCCcEEEEEeCC-CCCeeecCCCCcc--c--ccCccccceeEEEe-CCEEEEEecccceEEEeeCC-CC
Q 040781          157 VVVAGGACDFEDDPLAVEMYSVD-TRTWEICQSMPAV--L--KDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPS-TK  229 (316)
Q Consensus       157 v~~~gg~~~~~~~~~~v~vy~~~-t~~W~~~~~~p~~--~--~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~-~~  229 (316)
                      +++.+.      ....+.+|+.. +++.+.+...+..  .  .+.......++++. ++.+|+.+...+.|..||+. ++
T Consensus       100 l~~~~~------~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g  173 (347)
T 3hfq_A          100 VYSANY------HKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAG  173 (347)
T ss_dssp             EEEEET------TTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTS
T ss_pred             EEEEeC------CCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCC
Confidence            666542      12457788774 3344433211110  0  00000001123343 45588887666788999988 44


Q ss_pred             CccCCCcCCCCCcccceeeeeeEeeCCE-EEEEecCCCCCCcceeeEEEee
Q 040781          230 GWSGPFHLRQFDHEKKVFYSVITFANDR-LIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       230 ~W~~~~~l~~~~~~~~~~~~~l~~~~g~-L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      +...+.....+.. .. .......-+|+ |++.+...     ..+.+|.++
T Consensus       174 ~~~~~~~~~~~~g-~~-p~~~~~spdg~~l~v~~~~~-----~~v~v~~~~  217 (347)
T 3hfq_A          174 QLSEQSVLTMEAG-FG-PRHLVFSPDGQYAFLAGELS-----SQIASLKYD  217 (347)
T ss_dssp             CEEEEEEEECCTT-CC-EEEEEECTTSSEEEEEETTT-----TEEEEEEEE
T ss_pred             cEEEeeeEEcCCC-CC-CceEEECCCCCEEEEEeCCC-----CEEEEEEec
Confidence            4332221111100 00 11112233555 66655322     248888887

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=88.14  E-value=1.4  Score=36.90  Aligned_cols=72  Identities=11%  Similarity=0.126  Sum_probs=35.3

Q ss_pred             eEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEee-CCEEEEEecCCCCCCcceeeEEEee
Q 040781          203 SVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFA-NDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       203 ~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~-~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      .++...+.+.+.++..+.|..||..++.|..+.................... ++++++.++...     .+.||.++
T Consensus       255 ~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg-----~v~~W~~~  327 (330)
T 2hes_X          255 NVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG-----IVNFWSLE  327 (330)
T ss_dssp             EEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS-----EEEEEEC-
T ss_pred             EEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC-----cEEEEEec
Confidence            4444444455666677789999998877654332211100001111111111 456666665433     39999886

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=88.07  E-value=7  Score=32.05  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=55.2

Q ss_pred             cCCEEEEEcCC-ceeeeecCC--CCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eee
Q 040781          112 HSTLLYTLSPS-KLSFSFDPL--HLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEI  185 (316)
Q Consensus       112 ~~~~l~~~gg~-~~~~v~np~--t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~  185 (316)
                      .+..||+.+.. +.+.+|+..  ++++..+...+.......++..  +..+++.+.      ....+.+||...+. .+.
T Consensus        48 dg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~~~  121 (343)
T 1ri6_A           48 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVSVTRLEDGLPVGV  121 (343)
T ss_dssp             TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEEEEEEETTEEEEE
T ss_pred             CCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEEEEECCCCccccc
Confidence            45667766643 788888765  7776654322221122233332  234655543      12457788774222 222


Q ss_pred             cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC-CCc
Q 040781          186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST-KGW  231 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~-~~W  231 (316)
                      +...+.  .....    ++++.  +..+|+.+...+.|..||+.+ ++.
T Consensus       122 ~~~~~~--~~~~~----~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A          122 VDVVEG--LDGCH----SANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             EEEECC--CTTBC----CCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             cccccC--CCCce----EEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            221111  11111    22333  456888775667899999987 554

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=88.07  E-value=3.1  Score=35.23  Aligned_cols=105  Identities=10%  Similarity=-0.034  Sum_probs=52.8

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +..++.| ..+.+.+||..+++....-...... -..++..  +..+++.++.+      ..+.+||.++++-.......
T Consensus       151 g~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~-v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~  223 (357)
T 4g56_B          151 GTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE-VNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFC  223 (357)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCT
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC-EEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeec
Confidence            4434444 4478999999887654321111110 0122222  22344444422      34888888776533221111


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  ...   ...++++.  ++.+.+.++..+.|..||+.+.+
T Consensus       224 ~--~~~---~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~  260 (357)
T 4g56_B          224 A--SDT---IPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD  260 (357)
T ss_dssp             T--CCS---CEEEEEECTTSTTEEEEEESSSCEEEEESSCGG
T ss_pred             c--ccc---cccchhhhhcccceEEEeecccceeEEECCCCc
Confidence            1  100   01134443  45677777777789999997654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=87.97  E-value=2.4  Score=35.11  Aligned_cols=109  Identities=10%  Similarity=-0.040  Sum_probs=58.0

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .++.+|+.+ +.+.+.++|+.+++....-+.+.......++..  +..+++.+.      ....+.+||..+++-...-.
T Consensus         9 ~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~~~~~~   82 (349)
T 1jmx_B            9 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNTFHAN   82 (349)
T ss_dssp             TTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEEEEEE
T ss_pred             CCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcEEEEEE
Confidence            456667665 568999999999876432111210012233333  335666653      22468899998876433211


Q ss_pred             CCcc---cccCccccceeEEEe--CCEEEEEecc-----------cceEEEeeCCCCC
Q 040781          189 MPAV---LKDSAASTWLSVAVN--SRQLYVTEKY-----------SGITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~---~~~~~~~~~~~~~~~--~~~~y~~~~~-----------~~~i~~yD~~~~~  230 (316)
                      .+..   ......    ++++.  |..+|+.+..           .+.|..||+.+++
T Consensus        83 ~~~~~~~~~~~~~----~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           83 LSSVPGEVGRSMY----SFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             SCCSTTEEEECSS----CEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ccccccccccccc----ceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence            1110   000111    33343  4467766532           3688999998754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=87.91  E-value=7.2  Score=32.89  Aligned_cols=98  Identities=9%  Similarity=-0.062  Sum_probs=52.3

Q ss_pred             CCceeeeecCCCCceeecCCCCC-CCCCCEEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCc
Q 040781          121 PSKLSFSFDPLHLAWHHVDAPRV-WRTDPVVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSA  197 (316)
Q Consensus       121 g~~~~~v~np~t~~w~~lp~~~~-~~~~~~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~  197 (316)
                      ..+.+.+||..+++....-.... ...-..++...  ...++.++.      ...+.++|..+.....+..... .....
T Consensus        94 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~-~~~~v  166 (383)
T 3ei3_B           94 KGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSI------RGATTLRDFSGSVIQVFAKTDS-WDYWY  166 (383)
T ss_dssp             BTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEET------TTEEEEEETTSCEEEEEECCCC-SSCCE
T ss_pred             CCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeC------CCEEEEEECCCCceEEEeccCC-CCCCe
Confidence            34689999998877654422111 11111233333  355665542      2458899988766555432211 01111


Q ss_pred             cccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781          198 ASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       198 ~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      .    ++++. ++.+.+.++..+.|..||+..+
T Consensus       167 ~----~~~~~~~~~~l~~~~~d~~i~i~d~~~~  195 (383)
T 3ei3_B          167 C----CVDVSVSRQMLATGDSTGRLLLLGLDGH  195 (383)
T ss_dssp             E----EEEEETTTTEEEEEETTSEEEEEETTSC
T ss_pred             E----EEEECCCCCEEEEECCCCCEEEEECCCC
Confidence            1    33333 4556666667788999998543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=87.79  E-value=7.7  Score=35.73  Aligned_cols=110  Identities=14%  Similarity=0.159  Sum_probs=65.2

Q ss_pred             cCCEEEEEcC-CceeeeecC-CCCc--eeecCCCCC-----CC---CCCEEEE--ECCE----EEEEcCcCCCCCCCcEE
Q 040781          112 HSTLLYTLSP-SKLSFSFDP-LHLA--WHHVDAPRV-----WR---TDPVVAL--VGDK----VVVAGGACDFEDDPLAV  173 (316)
Q Consensus       112 ~~~~l~~~gg-~~~~~v~np-~t~~--w~~lp~~~~-----~~---~~~~~~~--~~~~----v~~~gg~~~~~~~~~~v  173 (316)
                      .++.||+.+. .+.++.+|+ .|++  |+.-+....     ..   ...+.++  .+++    ||+...       ...+
T Consensus        61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-------dg~l  133 (599)
T 1w6s_A           61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-------DGNV  133 (599)
T ss_dssp             ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-------TSEE
T ss_pred             ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-------CCEE
Confidence            4789999887 678999999 8875  665332211     11   1123344  4555    776532       2457


Q ss_pred             EEEeCCCCC--eeecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781          174 EMYSVDTRT--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS  232 (316)
Q Consensus       174 ~vy~~~t~~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~  232 (316)
                      ..+|..|++  |+.-..-+........    +..+.++.+|+..+     ..+.|.+||..+++  |+
T Consensus       134 ~AlDa~TG~~~W~~~~~~~~~~~~~~s----sP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~  197 (599)
T 1w6s_A          134 AALNAETGETVWKVENSDIKVGSTLTI----APYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWR  197 (599)
T ss_dssp             EEEETTTCCEEEEEECCCGGGTCBCCS----CCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred             EEEECCCCCEEEeecCCCCCccceeec----CCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEE
Confidence            788988775  8764221110001112    34567888887653     35689999998765  65

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=87.79  E-value=11  Score=31.20  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=62.8

Q ss_pred             cCCEEEEEcCCceeeeecCCCCceee-cCCCCC-CCCCC-EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRV-WRTDP-VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC  186 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~-~~~~~-~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~  186 (316)
                      .+..+|+....+.+.++|+.+++-.. ++.... +.... .++..  +..+|+...      ....+.+||..+++-...
T Consensus       195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS------KAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES------SSSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEE
Confidence            45778887766789999999886543 221111 11111 23333  456766653      235689999988765433


Q ss_pred             CCCCcccccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781          187 QSMPAVLKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       187 ~~~p~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ...+.  .   .    ++++  .+..+|+.+...+.|..||+.+.+
T Consensus       269 ~~~~~--~---~----~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~  305 (353)
T 3vgz_A          269 VAAPE--S---L----AVLFNPARNEAYVTHRQAGKVSVIDAKSYK  305 (353)
T ss_dssp             EECSS--C---C----CEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred             EEcCC--C---c----eEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence            22222  1   1    2333  356688888767889999998766

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=87.75  E-value=3.8  Score=34.01  Aligned_cols=132  Identities=14%  Similarity=0.049  Sum_probs=67.8

Q ss_pred             ceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCC---CeeecCCCCcccccCc
Q 040781          123 KLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTR---TWEICQSMPAVLKDSA  197 (316)
Q Consensus       123 ~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~---~W~~~~~~p~~~~~~~  197 (316)
                      +.++++|+.+++...+..  ......+++..  +..+|+.-.      ....+.+|+..+.   ..+.+..++    . .
T Consensus       165 g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~------~~~~I~~~~~~~~~~~~~~~~~~~~----g-P  231 (322)
T 2fp8_A          165 GRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEF------LSHQIVKYWLEGPKKGTAEVLVKIP----N-P  231 (322)
T ss_dssp             EEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEG------GGTEEEEEESSSTTTTCEEEEEECS----S-E
T ss_pred             ceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeC------CCCeEEEEECCCCcCCccceEEeCC----C-C
Confidence            568999998887654421  11111234443  235777642      1245888887652   333322221    1 2


Q ss_pred             cccceeEEEe-CCEEEEEecc----------cceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781          198 ASTWLSVAVN-SRQLYVTEKY----------SGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGE  266 (316)
Q Consensus       198 ~~~~~~~~~~-~~~~y~~~~~----------~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~  266 (316)
                      .    ++++. +|.+|+....          .+.|..||+..+....+. .+..  ........+...+|+||+.+....
T Consensus       232 ~----gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~-~~~g--~~~~~~~~~~~~~g~L~v~~~~~~  304 (322)
T 2fp8_A          232 G----NIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIP-LPPP--FAGEHFEQIQEHDGLLYIGTLFHG  304 (322)
T ss_dssp             E----EEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEE-CCTT--TTTSCCCEEEEETTEEEEECSSCS
T ss_pred             C----CeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEE-CCCC--CccccceEEEEeCCEEEEeecCCC
Confidence            2    55555 4678887643          457899999755433222 2211  000111223346889998874332


Q ss_pred             CCCcceeeEEEee
Q 040781          267 AEDVKSLKIWQVN  279 (316)
Q Consensus       267 ~~~~~~~~iw~l~  279 (316)
                           .|.++.++
T Consensus       305 -----~i~~~~~~  312 (322)
T 2fp8_A          305 -----SVGILVYD  312 (322)
T ss_dssp             -----EEEEEEC-
T ss_pred             -----ceEEEecc
Confidence                 26556555

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=87.63  E-value=2.6  Score=36.25  Aligned_cols=136  Identities=13%  Similarity=0.177  Sum_probs=66.4

Q ss_pred             CceeeeecCCCCceee-cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcc
Q 040781          122 SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA  198 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~  198 (316)
                      .+.+.+||..+++-.. +....  ..-..++..  +..+++.|+-.    ....+.+||..+++-...-..    .....
T Consensus       238 d~~v~iwd~~~~~~~~~~~~~~--~~v~~~~~~p~~~~ll~~~~gs----~d~~i~i~d~~~~~~~~~~~~----~~~v~  307 (401)
T 4aez_A          238 DNVVQIWDARSSIPKFTKTNHN--AAVKAVAWCPWQSNLLATGGGT----MDKQIHFWNAATGARVNTVDA----GSQVT  307 (401)
T ss_dssp             TSCEEEEETTCSSEEEEECCCS--SCCCEEEECTTSTTEEEEECCT----TTCEEEEEETTTCCEEEEEEC----SSCEE
T ss_pred             CCeEEEccCCCCCccEEecCCc--ceEEEEEECCCCCCEEEEecCC----CCCEEEEEECCCCCEEEEEeC----CCcEE
Confidence            4688899987765432 21111  111233333  34566665311    234588999887653322111    11111


Q ss_pred             ccceeEEEe--CCEEEEE-ecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeE
Q 040781          199 STWLSVAVN--SRQLYVT-EKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKI  275 (316)
Q Consensus       199 ~~~~~~~~~--~~~~y~~-~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~i  275 (316)
                          +++..  +..++.. |...+.|..||..+........++..  ..... .....-+|++++.++...     .+.+
T Consensus       308 ----~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h--~~~v~-~~~~s~dg~~l~s~~~dg-----~i~i  375 (401)
T 4aez_A          308 ----SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH--DTRVL-YSALSPDGRILSTAASDE-----NLKF  375 (401)
T ss_dssp             ----EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC--SSCCC-EEEECTTSSEEEEECTTS-----EEEE
T ss_pred             ----EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC--CCCEE-EEEECCCCCEEEEEeCCC-----cEEE
Confidence                33333  3344444 33667899999887654433222221  01111 111233566666664333     4999


Q ss_pred             EEee
Q 040781          276 WQVN  279 (316)
Q Consensus       276 w~l~  279 (316)
                      |.+.
T Consensus       376 w~~~  379 (401)
T 4aez_A          376 WRVY  379 (401)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9997

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=87.47  E-value=2.3  Score=35.19  Aligned_cols=106  Identities=14%  Similarity=0.090  Sum_probs=59.7

Q ss_pred             CCEEEEEc-CCceeeeecCCCCce----eecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAW----HHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI  185 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w----~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~  185 (316)
                      |..+|+.+ +.+.+.+||+.+++.    ..++..   .....++..  +..+++...      ....+.++|..+++.+.
T Consensus       187 g~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~------~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          187 GNFAFVANLIGNSIGILETQNPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTE------STVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             SSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS---SCCCCEEECTTSSEEEEECS------SEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCeEEEEECCCCcccceeeeccCC---CCCceEEECCCCCEEEEEEc------CCCEEEEEECCCCceee
Confidence            45577766 457899999988775    233221   111123332  344666543      12458889999887754


Q ss_pred             cCCCCccc-----ccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCC
Q 040781          186 CQSMPAVL-----KDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       186 ~~~~p~~~-----~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +...+...     .....   .++++  .+..+|+.+...+.|.+||+.+..
T Consensus       258 ~~~~~~~~~~~~~~~~~~---~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          258 VKSFGHGLLIDPRPLFGA---NQMALNKTETKLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             EEEEECCCCCCCGGGTTC---CCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccccccccCCCCcccc---cceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence            43221100     11100   01233  356788888777789999998765

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=87.32  E-value=2.8  Score=35.25  Aligned_cols=105  Identities=9%  Similarity=0.039  Sum_probs=53.1

Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC---CCcccccCccccceeEEEe--CCEEEEEecc-cceEEEeeCC-
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS---MPAVLKDSAASTWLSVAVN--SRQLYVTEKY-SGITVSFDPS-  227 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~---~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~-~~~i~~yD~~-  227 (316)
                      ..+|+...      ....+.+|+..+++.+.+..   .+.. .....    ++++.  |..+|+.... .+.|..||+. 
T Consensus       223 ~~l~v~~~------~~~~v~v~~~~~g~~~~~~~~~~~~~~-~~~~~----~i~~spdg~~l~v~~~~~~~~i~v~~~~~  291 (361)
T 3scy_A          223 KFAYLINE------IGGTVIAFRYADGMLDEIQTVAADTVN-AQGSG----DIHLSPDGKYLYASNRLKADGVAIFKVDE  291 (361)
T ss_dssp             SEEEEEET------TTCEEEEEEEETTEEEEEEEEESCSSC-CCCEE----EEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred             CEEEEEcC------CCCeEEEEEecCCceEEeEEEecCCCC-CCCcc----cEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence            35666653      22458889888877755532   2220 01111    34443  4567877655 5678888775 


Q ss_pred             -CCCccCCCcCCCCCcccceeeeeeEeeCCE-EEEEecCCCCCCcceeeEEEee
Q 040781          228 -TKGWSGPFHLRQFDHEKKVFYSVITFANDR-LIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       228 -~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~-L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                       ++++..+..++..   .. -......-+|+ |++.+...     ..+.+|.++
T Consensus       292 ~~g~~~~~~~~~~g---~~-~~~~~~spdg~~l~~~~~~~-----~~v~v~~~d  336 (361)
T 3scy_A          292 TNGTLTKVGYQLTG---IH-PRNFIITPNGKYLLVACRDT-----NVIQIFERD  336 (361)
T ss_dssp             TTCCEEEEEEEECS---SC-CCEEEECTTSCEEEEEETTT-----TEEEEEEEC
T ss_pred             CCCcEEEeeEecCC---CC-CceEEECCCCCEEEEEECCC-----CCEEEEEEE
Confidence             4554443322211   00 01111233555 55544322     248899888

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=87.32  E-value=4  Score=35.28  Aligned_cols=142  Identities=10%  Similarity=0.071  Sum_probs=68.6

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +.+++.| ..+.+.+||..+++....-...... -..++.. ++++++.|+.+      ..+.+||..+.+-  +..+..
T Consensus       120 ~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~-V~~v~~~~~~~~l~sgs~D------~~i~iwd~~~~~~--~~~~~~  190 (410)
T 1vyh_C          120 FSVMVSASEDATIKVWDYETGDFERTLKGHTDS-VQDISFDHSGKLLASCSAD------MTIKLWDFQGFEC--IRTMHG  190 (410)
T ss_dssp             SSEEEEEESSSCEEEEETTTCCCCEEECCCSSC-EEEEEECTTSSEEEEEETT------SCCCEEETTSSCE--EECCCC
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc-EEEEEEcCCCCEEEEEeCC------CeEEEEeCCCCce--eEEEcC
Confidence            3334444 3478999999887653321111110 0122222 34556666533      3366788765432  222211


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                       .....    .++++. ++.+.+.++..+.|..||+.++.-.  ..+...   ...........+|.+++.++...    
T Consensus       191 -h~~~V----~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~--~~~~~h---~~~v~~~~~~~~g~~l~s~s~D~----  256 (410)
T 1vyh_C          191 -HDHNV----SSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV--KTFTGH---REWVRMVRPNQDGTLIASCSNDQ----  256 (410)
T ss_dssp             -CSSCE----EEEEECSSSSEEEEEETTSEEEEEETTTCCEE--EEEECC---SSCEEEEEECTTSSEEEEEETTS----
T ss_pred             -CCCCE----EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE--EEEeCC---CccEEEEEECCCCCEEEEEcCCC----
Confidence             01111    134443 4556667777789999999876521  111111   11111111233566666665433    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.+|.+.
T Consensus       257 -~v~vwd~~  264 (410)
T 1vyh_C          257 -TVRVWVVA  264 (410)
T ss_dssp             -CEEEEETT
T ss_pred             -eEEEEECC
Confidence             28888775

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=87.30  E-value=4.7  Score=33.98  Aligned_cols=97  Identities=12%  Similarity=0.014  Sum_probs=48.2

Q ss_pred             CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781          122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST  200 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~  200 (316)
                      .+.+.+||..+++....-...... -..++.. +...++.|+.+      ..+.+||..++.-...-.... ......  
T Consensus       219 Dg~v~~wd~~~~~~~~~~~~h~~~-v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~~~-~~~~~~--  288 (354)
T 2pbi_B          219 DKKAMVWDMRSGQCVQAFETHESD-VNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSKES-IIFGAS--  288 (354)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSC-EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTT-CCSCEE--
T ss_pred             CCeEEEEECCCCcEEEEecCCCCC-eEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcCCC-ccccee--
Confidence            467889998887653321111100 0122222 34455555432      348889887764222111100 001111  


Q ss_pred             ceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          201 WLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       201 ~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        .+++. ++.+.+.++..+.|..||+.++.
T Consensus       289 --~~~~s~~g~~l~~g~~d~~i~vwd~~~~~  317 (354)
T 2pbi_B          289 --SVDFSLSGRLLFAGYNDYTINVWDVLKGS  317 (354)
T ss_dssp             --EEEECTTSSEEEEEETTSCEEEEETTTCS
T ss_pred             --EEEEeCCCCEEEEEECCCcEEEEECCCCc
Confidence              23333 45666666677789999997654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=87.12  E-value=6.7  Score=32.20  Aligned_cols=94  Identities=9%  Similarity=0.075  Sum_probs=46.7

Q ss_pred             CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcccc
Q 040781          122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAST  200 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~  200 (316)
                      .+.+.+||..+++....-...... -..++.. ++++++.|+.      ...+.+||..+.+-  +..+..  .....  
T Consensus       194 d~~i~i~d~~~~~~~~~~~~h~~~-v~~~~~s~~~~~l~s~s~------Dg~i~iwd~~~~~~--~~~~~~--~~~v~--  260 (340)
T 4aow_A          194 DKLVKVWNLANCKLKTNHIGHTGY-LNTVTVSPDGSLCASGGK------DGQAMLWDLNEGKH--LYTLDG--GDIIN--  260 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSC-EEEEEECTTSSEEEEEET------TCEEEEEETTTTEE--EEEEEC--SSCEE--
T ss_pred             CCEEEEEECCCCceeeEecCCCCc-EEEEEECCCCCEEEEEeC------CCeEEEEEeccCce--eeeecC--CceEE--
Confidence            367888888776653321111100 0122222 3455555553      24588888876532  111111  11111  


Q ss_pred             ceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          201 WLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       201 ~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        .++...+..++.++..+.|..||+.+..
T Consensus       261 --~~~~~~~~~~~~~~~d~~i~iwd~~~~~  288 (340)
T 4aow_A          261 --ALCFSPNRYWLCAATGPSIKIWDLEGKI  288 (340)
T ss_dssp             --EEEECSSSSEEEEEETTEEEEEETTTTE
T ss_pred             --eeecCCCCceeeccCCCEEEEEECCCCe
Confidence              3444444455566666788999987654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=87.09  E-value=8.4  Score=32.39  Aligned_cols=143  Identities=13%  Similarity=0.032  Sum_probs=69.3

Q ss_pred             EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      .|+..+..+.+.+||..+++....-...... -..+...   .+..++.|+.+      ..+.++|..+++-...-.. .
T Consensus       168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs~D------g~v~~wd~~~~~~~~~~~~-h  239 (354)
T 2pbi_B          168 QILTASGDGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGGCD------KKAMVWDMRSGQCVQAFET-H  239 (354)
T ss_dssp             EEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEETT------SCEEEEETTTCCEEEEECC-C
T ss_pred             EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCcEEEEecC-C
Confidence            3333334578999999887653221100000 0011111   23455555532      3488999888764332111 0


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                        .....    ++++. ++.+.+.++..+.|..||+.+..-  +..+......... .......+|++++.|+...    
T Consensus       240 --~~~v~----~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~-~~~~~s~~g~~l~~g~~d~----  306 (354)
T 2pbi_B          240 --ESDVN----SVRYYPSGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGA-SSVDFSLSGRLLFAGYNDY----  306 (354)
T ss_dssp             --SSCEE----EEEECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCE-EEEEECTTSSEEEEEETTS----
T ss_pred             --CCCeE----EEEEeCCCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccce-eEEEEeCCCCEEEEEECCC----
Confidence              11111    34443 455666777778899999986541  1111111000011 1111233677777775433    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.||.+.
T Consensus       307 -~i~vwd~~  314 (354)
T 2pbi_B          307 -TINVWDVL  314 (354)
T ss_dssp             -CEEEEETT
T ss_pred             -cEEEEECC
Confidence             38889875

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=87.06  E-value=12  Score=32.61  Aligned_cols=182  Identities=8%  Similarity=-0.066  Sum_probs=83.5

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeec-CCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHV-DAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~l-p~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +.+++.| ..+.+.+||..+++.... ....... -..++..+.+.++.|+.      ...+.+||..+++-...-....
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~-v~~~~~sd~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~  282 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHF-VSSICCGKDYLLLSAGG------DDKIFAWDWKTGKNLSTFDYNS  282 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTTCEEEECCCCSSC-EEEEEECSTTEEEEEES------SSEEEEEETTTCCEEEEEECHH
T ss_pred             CcEEEEEcCCCcEEEEECCCCceeeeeecCCCCc-eEEEEECCCCEEEEEeC------CCeEEEEECCCCcEeeeecchh
Confidence            5444444 346899999877654321 1111110 01222224555555542      2468899988776432211000


Q ss_pred             ---ccc---------------cCccccceeEEEe--CCEEEEEecccceEEEeeC--CC-CCccCCCcCCCCCcccceee
Q 040781          192 ---VLK---------------DSAASTWLSVAVN--SRQLYVTEKYSGITVSFDP--ST-KGWSGPFHLRQFDHEKKVFY  248 (316)
Q Consensus       192 ---~~~---------------~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~--~~-~~W~~~~~l~~~~~~~~~~~  248 (316)
                         ...               ........+++..  +..+++.+...+.|..||+  .+ ..+..+..++.+   ...  
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v--  357 (450)
T 2vdu_B          283 LIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNV--  357 (450)
T ss_dssp             HHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCE--
T ss_pred             hhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---Cce--
Confidence               000               0000001123333  4455665546678999998  32 233323222222   111  


Q ss_pred             eeeEeeCCEEEEEecCCCCC--CcceeeEEEeeccCCchhhhhhcC-----CCcHHHHHHHhcCCcceee
Q 040781          249 SVITFANDRLIAVGLTGEAE--DVKSLKIWQVNIKGGSLEELKEIG-----EMPKALLEKLKGNKRSAVE  311 (316)
Q Consensus       249 ~~l~~~~g~L~v~g~~~~~~--~~~~~~iw~l~~~~~~~~~W~~i~-----~~p~~~~~~~~~~~~~~~~  311 (316)
                      ..+....+.+++........  ....+++|.++  ..+.+ |+ +.     .+-.++....-..+.+.++
T Consensus       358 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~--~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (450)
T 2vdu_B          358 ISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN--LNENS-FV-VNNEKSNEFDSAIIQSVQGDSNLVTK  423 (450)
T ss_dssp             EEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE--TTTTE-EE-ECHHHHHHHHHHHHHHHTTCTTTEEC
T ss_pred             EEEEecCCcEEEEEecccCCCCCCcceEEEEEE--cCCCe-EE-EccccCcchhHHHHHhhhcCCccccc
Confidence            23333446677665443211  23448999998  43322 53 21     2233555555555555443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=86.87  E-value=11  Score=30.46  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=52.0

Q ss_pred             cCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      .+++ +.+|..+.+.+||..|++...+-........ ..++.. +++.++.|+.      ...+.++|..+++-..... 
T Consensus        35 ~~~~-lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~------Dg~v~iw~~~~~~~~~~~~-  106 (318)
T 4ggc_A           35 SGNV-LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS------SAEVQLWDVQQQKRLRNMT-  106 (318)
T ss_dssp             TTSE-EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET------TSEEEEEETTTTEEEEEEE-
T ss_pred             CCCE-EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC------CCcEEEeecCCceeEEEec-
Confidence            3454 4455446899999999887554221111111 122222 3456666653      2458889988765322110 


Q ss_pred             CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                          .+...  ....... +.+.+.++..+.+..++..+..
T Consensus       107 ----~h~~~--~~~~~~~-~~~l~s~~~~~~~~~~~~~~~~  140 (318)
T 4ggc_A          107 ----SHSAR--VGSLSWN-SYILSSGSRSGHIHHHDVRVAE  140 (318)
T ss_dssp             ----CCSSC--EEEEEEE-TTEEEEEETTSEEEEEETTSSS
T ss_pred             ----Cccce--EEEeecC-CCEEEEEecCCceEeeecCCCc
Confidence                11111  0122223 3444455555666777766554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=86.72  E-value=9.1  Score=31.56  Aligned_cols=103  Identities=9%  Similarity=0.067  Sum_probs=51.6

Q ss_pred             CEEEEEcC----CceeeeecCCCCceeecCCCCCCCCCCEEEEEC----CEEEEEcCcCCCCCCCcEEEEEeCCCCC--e
Q 040781          114 TLLYTLSP----SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVG----DKVVVAGGACDFEDDPLAVEMYSVDTRT--W  183 (316)
Q Consensus       114 ~~l~~~gg----~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~----~~v~~~gg~~~~~~~~~~v~vy~~~t~~--W  183 (316)
                      ..+++.|+    .+.+.+||..+++...+........-..++...    ..+++.|+.+      ..+.+||..++.  -
T Consensus        31 ~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~  104 (357)
T 3i2n_A           31 AKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPEMPV  104 (357)
T ss_dssp             SEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCSSCS
T ss_pred             ceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCCccE
Confidence            34455552    478999999887765432111111111122221    2555555432      348888887765  1


Q ss_pred             eecCCCCcccccCccccceeEEE-------eCCEEEEEecccceEEEeeCCCCC
Q 040781          184 EICQSMPAVLKDSAASTWLSVAV-------NSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~~~~~-------~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ..+...      ...  ..++..       .++.+.+.++..+.|..||+.+..
T Consensus       105 ~~~~~~------~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~  150 (357)
T 3i2n_A          105 YSVKGH------KEI--INAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD  150 (357)
T ss_dssp             EEECCC------SSC--EEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS
T ss_pred             EEEEec------ccc--eEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC
Confidence            111111      000  002211       235556666677789999998765

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=86.64  E-value=4.3  Score=38.43  Aligned_cols=106  Identities=9%  Similarity=0.062  Sum_probs=53.6

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCC-CEEEEE-C--CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALV-G--DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~-~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      +..++..+..+.+.+||..++++..+......... ..+... +  .+.++.|+.      ...+.+||..++.-.....
T Consensus        67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~------dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASS------DGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEECCSSSCCCCEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeC------CCcEEEEEeecCCCcceeE
Confidence            34444444457899999998876554322211111 122222 1  445555652      2458889887663211110


Q ss_pred             CCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      +.   .+..  ...+++..              ++.+.+.++..+.|..||+.+.
T Consensus       141 ~~---~~~~--~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          141 ID---AHAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             EE---CCSS--CEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ee---cCCC--ceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCC
Confidence            00   0000  01123332              2556666667778999998765

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=86.62  E-value=13  Score=32.09  Aligned_cols=109  Identities=12%  Similarity=0.017  Sum_probs=58.9

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecCCC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQSM  189 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~~~  189 (316)
                      ..+.||+.. +...+.++|+.+++...+........ .++..-+..+|+.....     ...+.+++..++. .+.+...
T Consensus       140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~-----~~~I~~~d~~~~~~~~~~g~~  213 (409)
T 3hrp_A          140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEG-----THTVYVYMKASGWAPTRIGQL  213 (409)
T ss_dssp             STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSST-----TCEEEEEEGGGTTCEEEEEEC
T ss_pred             CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCC-----CceEEEEEcCCCceeEEeeec
Confidence            446788876 44789999999887766532211111 22211234566654211     1267788876543 2233111


Q ss_pred             CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781          190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                      +........    ++++.  ++.+|+... .+.|..||+.+...
T Consensus       214 ~~~~~~~p~----~iav~p~~g~lyv~d~-~~~I~~~d~~~~~~  252 (409)
T 3hrp_A          214 GSTFSGKIG----AVALDETEEWLYFVDS-NKNFGRFNVKTQEV  252 (409)
T ss_dssp             CTTSCSCCC----BCEECTTSSEEEEECT-TCEEEEEETTTCCE
T ss_pred             cchhcCCcE----EEEEeCCCCeEEEEEC-CCcEEEEECCCCCE
Confidence            110011112    44554  588999654 56899999987763

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=86.60  E-value=4.7  Score=33.76  Aligned_cols=105  Identities=10%  Similarity=0.028  Sum_probs=53.7

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM  189 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~  189 (316)
                      |.+++.| ..+.+.+||..++.+.............  .++.. +++.++.|+.+      ..+.++|..++.++.+..+
T Consensus        28 g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~  101 (345)
T 3fm0_A           28 GTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD------ATTCIWKKNQDDFECVTTL  101 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECCC-EEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECC------CcEEEEEccCCCeEEEEEc
Confidence            3334444 4578999998887764321111111111  22222 34555555532      3477888777766544322


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      ..   +...  ..++++. ++.+.+.++..+.|..||+.++
T Consensus       102 ~~---h~~~--v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A          102 EG---HENE--VKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             CC---CSSC--EEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cC---CCCC--ceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            11   1110  1134444 4566667777788999998765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=86.44  E-value=5.2  Score=33.01  Aligned_cols=103  Identities=15%  Similarity=0.147  Sum_probs=53.9

Q ss_pred             EEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEE---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          117 YTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       117 ~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ++.| ..+.+.+||..++....+..+.. ....  .++..   +.++++.|+.+      ..+.++|..++.|.....+.
T Consensus        28 lasgs~D~~v~lwd~~~~~~~~~~~l~g-H~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~  100 (316)
T 3bg1_A           28 LATCSSDRSVKIFDVRNGGQILIADLRG-HEGPVWQVAWAHPMYGNILASCSYD------RKVIIWREENGTWEKSHEHA  100 (316)
T ss_dssp             EEEEETTTEEEEEEEETTEEEEEEEEEC-CSSCEEEEEECCGGGSSCEEEEETT------SCEEEECCSSSCCCEEEEEC
T ss_pred             EEEEeCCCeEEEEEecCCCcEEEEEEcC-CCccEEEEEeCCCCCCCEEEEEECC------CEEEEEECCCCcceEEEEcc
Confidence            4444 34689999987765322211111 1111  22221   13445555432      44889999888776543221


Q ss_pred             cccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCC-Cc
Q 040781          191 AVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTK-GW  231 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~-~W  231 (316)
                      . ......    ++++..   +.+.+.++..+.|..||..++ .|
T Consensus       101 ~-h~~~V~----~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~  140 (316)
T 3bg1_A          101 G-HDSSVN----SVCWAPHDYGLILACGSSDGAISLLTYTGEGQW  140 (316)
T ss_dssp             C-CSSCCC----EEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred             C-CCCceE----EEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence            1 011111    444442   566777777788899998765 35

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=86.42  E-value=15  Score=31.52  Aligned_cols=105  Identities=11%  Similarity=0.054  Sum_probs=61.8

Q ss_pred             cCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCC
Q 040781          112 HSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQS  188 (316)
Q Consensus       112 ~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~  188 (316)
                      .++.||... ..+.++.+++..+....+....... -.++++  .+..+|+.-.      ....+++++.....-+.+..
T Consensus       126 ~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~-p~glavd~~~g~lY~~d~------~~~~I~~~~~dg~~~~~l~~  198 (386)
T 3v65_B          126 RRELVFWSDVTLDRILRANLNGSNVEEVVSTGLES-PGGLAVDWVHDKLYWTDS------GTSRIEVANLDGAHRKVLLW  198 (386)
T ss_dssp             TTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSC-CCCEEEETTTTEEEEEET------TTTEEEECBTTSCSCEEEEC
T ss_pred             CCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCC-ccEEEEEeCCCeEEEEcC------CCCeEEEEeCCCCceEEeec
Confidence            357888876 4578999999877655442211111 123333  3678888753      22467888776543222211


Q ss_pred             CCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781          189 MPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG  230 (316)
Q Consensus       189 ~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~  230 (316)
                      - .  .....    ++++.  ++.+|+..... +.|..+|+....
T Consensus       199 ~-~--l~~P~----giavdp~~g~ly~td~~~~~~I~r~~~dG~~  236 (386)
T 3v65_B          199 Q-S--LEKPR----AIALHPMEGTIYWTDWGNTPRIEASSMDGSG  236 (386)
T ss_dssp             S-S--CSCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             C-C--CCCCc----EEEEEcCCCeEEEeccCCCCEEEEEeCCCCC
Confidence            0 0  01112    67776  78999988654 789999987644

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=86.33  E-value=12  Score=30.36  Aligned_cols=105  Identities=7%  Similarity=0.044  Sum_probs=50.5

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCC-CEEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCCC-eeecC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTD-PVVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTRT-WEICQ  187 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~-~~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~~~  187 (316)
                      +.+++.| ..+.+.+||..++++..+......... ..++...   +.+++.|+.      ...+.+||..++. +....
T Consensus        67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~------d~~v~~wd~~~~~~~~~~~  140 (297)
T 2pm7_B           67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASS------DGKVSVVEFKENGTTSPII  140 (297)
T ss_dssp             CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET------TSEEEEEEBCSSSCBCCEE
T ss_pred             CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEEC------CCcEEEEEecCCCceeeee
Confidence            3334444 457899999988876554221111111 1222221   344555542      2457888877652 32110


Q ss_pred             CCCcccccCccccceeEEEe--------------CCEEEEEecccceEEEeeCCCCC
Q 040781          188 SMPAVLKDSAASTWLSVAVN--------------SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~--------------~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       + .  .+...  ..+++..              ++.+.+.++..+.|..||+.+..
T Consensus       141 -~-~--~h~~~--v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          141 -I-D--AHAIG--VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             -E-E--CCSSC--EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred             -e-e--cccCc--cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence             0 0  00000  0012221              13566777777888999987543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=86.29  E-value=6.5  Score=32.13  Aligned_cols=131  Identities=8%  Similarity=-0.059  Sum_probs=64.1

Q ss_pred             ceEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC---EEEE-ECCEE
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP---VVAL-VGDKV  157 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~---~~~~-~~~~v  157 (316)
                      .++.||+..+....... +.  ..........|.+++.. ...++++|+.+++...+..........   .++. -++++
T Consensus        36 ~i~~~d~~~~~~~~~~~-~~--~~~~i~~~~dG~l~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l  111 (297)
T 3g4e_A           36 KVCRWDSFTKQVQRVTM-DA--PVSSVALRQSGGYVATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRY  111 (297)
T ss_dssp             EEEEEETTTCCEEEEEC-SS--CEEEEEEBTTSSEEEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCE
T ss_pred             EEEEEECCCCcEEEEeC-CC--ceEEEEECCCCCEEEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCE
Confidence            36778887765544421 21  11122222334344443 358999999999887664321111111   1222 24566


Q ss_pred             EEEcCcCC-----CCCCCcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeC
Q 040781          158 VVAGGACD-----FEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDP  226 (316)
Q Consensus       158 ~~~gg~~~-----~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~  226 (316)
                      ++......     .......+..++.. ++-..+ ..+    . ...    ++++.  +..+|+.....+.|..||.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~----~-~pn----gi~~spdg~~lyv~~~~~~~i~~~~~  178 (297)
T 3g4e_A          112 FAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQV----D-ISN----GLDWSLDHKIFYYIDSLSYSVDAFDY  178 (297)
T ss_dssp             EEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEE----S-BEE----EEEECTTSCEEEEEEGGGTEEEEEEE
T ss_pred             EEecCCcccccccccCCCcEEEEEECC-CCEEEEeecc----c-ccc----ceEEcCCCCEEEEecCCCCcEEEEec
Confidence            65431110     00122346666654 233322 111    1 111    45554  4579999887788999986

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=86.09  E-value=12  Score=30.29  Aligned_cols=104  Identities=12%  Similarity=0.068  Sum_probs=53.4

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCC--EEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ  187 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~  187 (316)
                      |..++.| ..+.+.+||..++..+.+..+. .....  .++...   .++++.|+.      ...+.++|..++.|..+.
T Consensus        21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~------D~~v~iWd~~~~~~~~~~   93 (297)
T 2pm7_B           21 GKRMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSY------DGKVMIWKEENGRWSQIA   93 (297)
T ss_dssp             SSEEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEET------TTEEEEEEBSSSCBCCCE
T ss_pred             CCEEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcC------CCEEEEEEcCCCceEEEE
Confidence            3334444 3478999987654332221111 11111  222211   345555542      255889999888776543


Q ss_pred             CCCcccccCccccceeEEEeC---CEEEEEecccceEEEeeCCCC
Q 040781          188 SMPAVLKDSAASTWLSVAVNS---RQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       188 ~~p~~~~~~~~~~~~~~~~~~---~~~y~~~~~~~~i~~yD~~~~  229 (316)
                      .+..   +...  ..++++..   +.+.+.++..+.|..||+.+.
T Consensus        94 ~~~~---h~~~--v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~  133 (297)
T 2pm7_B           94 VHAV---HSAS--VNSVQWAPHEYGPMLLVASSDGKVSVVEFKEN  133 (297)
T ss_dssp             EECC---CSSC--EEEEEECCGGGCSEEEEEETTSEEEEEEBCSS
T ss_pred             Eeec---CCCc--eeEEEeCcCCCCcEEEEEECCCcEEEEEecCC
Confidence            2211   1110  11344432   556666777788999998765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.03  E-value=13  Score=30.46  Aligned_cols=103  Identities=10%  Similarity=0.024  Sum_probs=53.0

Q ss_pred             CC-EEEEEcCCceeeeecC-CCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-------e
Q 040781          113 ST-LLYTLSPSKLSFSFDP-LHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-------W  183 (316)
Q Consensus       113 ~~-~l~~~gg~~~~~v~np-~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-------W  183 (316)
                      +. .++..+..+.+.+||. .+++...+........-..+.......++.++.      ...+.+||..+..       .
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~  141 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW------DGLIEVIDPRNYGDGVIAVKN  141 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET------TSEEEEECHHHHTTBCEEEEE
T ss_pred             CCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcC------CCeEEEEcccccccccccccC
Confidence            45 4444444578999999 888776664310111111233332344444442      2457888766400       1


Q ss_pred             eecCCCCcccccCccccceeEEEeCCEEEEEecccceEEEeeCCC
Q 040781          184 EICQSMPAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPST  228 (316)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~  228 (316)
                      +.+..+..  ....    .++++.++. .+.+...+.|..||+.+
T Consensus       142 ~~~~~~~~--~~~v----~~~~~~~~~-l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          142 LNSNNTKV--KNKI----FTMDTNSSR-LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             SCSSSSSS--CCCE----EEEEECSSE-EEEEESTTEEEEEESSC
T ss_pred             CeeeEEee--CCce----EEEEecCCc-EEEEeCCCeEEEEECCc
Confidence            22222211  1111    255666666 55555667899999987

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=85.95  E-value=13  Score=34.10  Aligned_cols=110  Identities=16%  Similarity=0.157  Sum_probs=63.6

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCC---CC---CCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCC-
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV---WR---TDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRT-  182 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~---~~---~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-  182 (316)
                      .++.||+.+..+.++.+|..|++  |+.-...+.   ..   ...+.++.+++||+...       ...+..+|..|++ 
T Consensus        67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~-------dg~l~AlD~~TG~~  139 (582)
T 1flg_A           67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL-------DASVVALNKNTGKV  139 (582)
T ss_dssp             ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-------TTEEEEEESSSCCE
T ss_pred             ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-------CCEEEEEECCCCCE
Confidence            57888988764469999999886  655322111   00   11233457888887532       2457888988875 


Q ss_pred             -eeecCCCCcccccCccccceeEEEeCC------EEEEEec-----ccceEEEeeCCCCC--cc
Q 040781          183 -WEICQSMPAVLKDSAASTWLSVAVNSR------QLYVTEK-----YSGITVSFDPSTKG--WS  232 (316)
Q Consensus       183 -W~~~~~~p~~~~~~~~~~~~~~~~~~~------~~y~~~~-----~~~~i~~yD~~~~~--W~  232 (316)
                       |+.-..-+........    +.++.++      .+|+...     ..+.|.+||..+++  |+
T Consensus       140 ~W~~~~~~~~~~~~~~~----sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~  199 (582)
T 1flg_A          140 VWKKKFADHGAGYTMTG----APTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM  199 (582)
T ss_dssp             EEEEECSCGGGTCBCCS----CCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred             EeeecCCCCCcCccccc----CCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEee
Confidence             8764221110001111    2334455      7777432     35689999998765  75

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.52  E-value=16  Score=34.49  Aligned_cols=104  Identities=13%  Similarity=0.135  Sum_probs=53.8

Q ss_pred             CCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +..|...+..+.+.+||..+++... +......  -..++.. +++.++.|+      ....+.+||..++ |.....+.
T Consensus        67 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--v~~~~~s~~~~~l~~~~------~dg~i~vw~~~~~-~~~~~~~~  137 (814)
T 3mkq_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY--IRSIAVHPTKPYVLSGS------DDLTVKLWNWENN-WALEQTFE  137 (814)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCSSC--EEEEEECSSSSEEEEEE------TTSEEEEEEGGGT-SEEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC--EEEEEEeCCCCEEEEEc------CCCEEEEEECCCC-ceEEEEEc
Confidence            4555444456789999998887543 2111110  0122222 333444444      2245888988765 22211110


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      . ....    ..+++..  ++.+.+.++..+.|..||+.+..
T Consensus       138 ~-~~~~----v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~  174 (814)
T 3mkq_A          138 G-HEHF----VMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (814)
T ss_dssp             C-CSSC----EEEEEEETTEEEEEEEEETTSEEEEEETTCSS
T ss_pred             C-CCCc----EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc
Confidence            0 0111    1144554  35667777777889999987654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=85.45  E-value=1.5  Score=36.81  Aligned_cols=106  Identities=12%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccC
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSG  233 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~  233 (316)
                      +++++.|+.      ...+.+||..+++++.+..+.. ......    ++++. ++.+.+.++..+.|..||+.++++..
T Consensus        20 ~~~l~~~~~------d~~v~i~~~~~~~~~~~~~~~~-h~~~v~----~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~   88 (372)
T 1k8k_C           20 RTQIAICPN------NHEVHIYEKSGNKWVQVHELKE-HNGQVT----GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP   88 (372)
T ss_dssp             SSEEEEECS------SSEEEEEEEETTEEEEEEEEEC-CSSCEE----EEEEETTTTEEEEEETTSCEEEEEEETTEEEE
T ss_pred             CCEEEEEeC------CCEEEEEeCCCCcEEeeeeecC-CCCccc----EEEEeCCCCEEEEEcCCCeEEEEECCCCeeee
Confidence            445555542      2568999998887766543321 011111    34444 45556666667789999998876543


Q ss_pred             CCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          234 PFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       234 ~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ...+...  ..... +.....+++++++++...     .+.+|.++
T Consensus        89 ~~~~~~~--~~~v~-~~~~~~~~~~l~~~~~d~-----~v~i~d~~  126 (372)
T 1k8k_C           89 TLVILRI--NRAAR-CVRWAPNEKKFAVGSGSR-----VISICYFE  126 (372)
T ss_dssp             EEECCCC--SSCEE-EEEECTTSSEEEEEETTS-----SEEEEEEE
T ss_pred             eEEeecC--CCcee-EEEECCCCCEEEEEeCCC-----EEEEEEec
Confidence            2212211  01111 111123455555554332     28888887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=85.37  E-value=6.6  Score=33.41  Aligned_cols=148  Identities=9%  Similarity=0.052  Sum_probs=70.7

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCC---CCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeee
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWR---TDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEI  185 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~---~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~  185 (316)
                      +.+++.+ ..+.+.+||..+++....-......   ...  .++..  +..+++.++.++.   ...+.+||..+..- .
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~---~~~i~~~d~~~~~~-~  253 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN---DPSILIWDLRNANT-P  253 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS---SCCCCEEETTSTTS-C
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC---CceEEEEeCCCCCC-C
Confidence            3444444 4578999999887653321111100   111  22222  2245555543211   12577888877531 1


Q ss_pred             cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCC-EEEEEe
Q 040781          186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFAND-RLIAVG  262 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g-~L~v~g  262 (316)
                      +..+..  .+  .....++++.  ++.+.+.++..+.|..||+.+.+-  +..+....  .... .....-++ ++++.+
T Consensus       254 ~~~~~~--~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~--~~v~-~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          254 LQTLNQ--GH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARG--NWCF-KTKFAPEAPDLFACA  324 (416)
T ss_dssp             SBCCCS--CC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSS--SCCC-CEEECTTCTTEEEEC
T ss_pred             cEEeec--Cc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCC--CceE-EEEECCCCCCEEEEE
Confidence            111110  01  1111244543  566777777778899999987641  22122110  1111 11112234 566666


Q ss_pred             cCCCCCCcceeeEEEee
Q 040781          263 LTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       263 ~~~~~~~~~~~~iw~l~  279 (316)
                      +...     .+.||.++
T Consensus       325 ~~d~-----~i~iw~~~  336 (416)
T 2pm9_A          325 SFDN-----KIEVQTLQ  336 (416)
T ss_dssp             CSSS-----EEEEEESC
T ss_pred             ecCC-----cEEEEEcc
Confidence            5433     38999997

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=85.28  E-value=13  Score=29.85  Aligned_cols=139  Identities=9%  Similarity=0.019  Sum_probs=65.2

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP  190 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p  190 (316)
                      +..++..+..+.+.+||..+ ....+....... -..++. -+.+ ++.|+.      ...+.+||..+++-... ... 
T Consensus       155 ~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~-i~~~~~~~~~~-~~~~~~------dg~i~i~d~~~~~~~~~~~~~-  224 (313)
T 3odt_A          155 ENKFLTASADKTIKLWQNDK-VIKTFSGIHNDV-VRHLAVVDDGH-FISCSN------DGLIKLVDMHTGDVLRTYEGH-  224 (313)
T ss_dssp             TTEEEEEETTSCEEEEETTE-EEEEECSSCSSC-EEEEEEEETTE-EEEEET------TSEEEEEETTTCCEEEEEECC-
T ss_pred             CCEEEEEECCCCEEEEecCc-eEEEEeccCccc-EEEEEEcCCCe-EEEccC------CCeEEEEECCchhhhhhhhcC-
Confidence            45544444457889998322 122221111111 112222 3456 444542      24588999887642211 111 


Q ss_pred             cccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                         ...    ..++++..+..++.++..+.|..||+.+.+-...  +..+.  .... ......+++++ +++...    
T Consensus       225 ---~~~----i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~--~~~~~--~~i~-~~~~~~~~~~~-~~~~dg----  287 (313)
T 3odt_A          225 ---ESF----VYCIKLLPNGDIVSCGEDRTVRIWSKENGSLKQV--ITLPA--ISIW-SVDCMSNGDII-VGSSDN----  287 (313)
T ss_dssp             ---SSC----EEEEEECTTSCEEEEETTSEEEEECTTTCCEEEE--EECSS--SCEE-EEEECTTSCEE-EEETTS----
T ss_pred             ---Cce----EEEEEEecCCCEEEEecCCEEEEEECCCCceeEE--EeccC--ceEE-EEEEccCCCEE-EEeCCC----
Confidence               111    1144444332455666778899999987763221  22220  1111 11223356654 443332    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.+|.++
T Consensus       288 -~i~iw~~~  295 (313)
T 3odt_A          288 -LVRIFSQE  295 (313)
T ss_dssp             -CEEEEESC
T ss_pred             -cEEEEeCC
Confidence             39999998

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=85.24  E-value=15  Score=30.47  Aligned_cols=154  Identities=10%  Similarity=-0.024  Sum_probs=74.9

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCee--ecCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWE--ICQSM  189 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~--~~~~~  189 (316)
                      +.+++.+ ..+.+.+||..+++...+...........++.. ++++++.|+.+      ..+.+||..+++-.  .+.. 
T Consensus       139 ~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~d------g~i~iwd~~~~~~~~~~~~~-  211 (343)
T 3lrv_A          139 TEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPD------GILDVYNLSSPDQASSRFPV-  211 (343)
T ss_dssp             CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTT------SCEEEEESSCTTSCCEECCC-
T ss_pred             CCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCCCCccEEec-
Confidence            4444444 347899999988876443211111112233333 45667766533      45899999876532  1111 


Q ss_pred             CcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCC-CcccceeeeeeE-eeCCEEEEEecCCC
Q 040781          190 PAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQF-DHEKKVFYSVIT-FANDRLIAVGLTGE  266 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~-~~~~~~~~~~l~-~~~g~L~v~g~~~~  266 (316)
                          .+..  ...++++. ++.+.+.++ .+.|..||+.+..-  +..+..- ..........+. ..+|+.+++++.++
T Consensus       212 ----~h~~--~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d  282 (343)
T 3lrv_A          212 ----DEEA--KIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVG--TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNES  282 (343)
T ss_dssp             ----CTTS--CEEEEEECTTSSEEEEEE-SSBEEEEETTSSTT--CBSSCCCBC-----CCEEEEECTTSSEEEEEETTT
T ss_pred             ----cCCC--CEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCc--ceeecccccccccccceEEEECCCCCEEEEecCCC
Confidence                0111  11244554 344444444 45899999987651  1112210 000011101122 33566666643212


Q ss_pred             CCCcceeeEEEeeccCCchhhhhh
Q 040781          267 AEDVKSLKIWQVNIKGGSLEELKE  290 (316)
Q Consensus       267 ~~~~~~~~iw~l~~~~~~~~~W~~  290 (316)
                          ..+.||.++  ... +.|..
T Consensus       283 ----~~i~v~~~~--~~~-~~~~~  299 (343)
T 3lrv_A          283 ----NSLTIYKFD--KKT-KNWTK  299 (343)
T ss_dssp             ----TEEEEEEEC--TTT-CSEEE
T ss_pred             ----CcEEEEEEc--ccc-cceEe
Confidence                239999997  433 33765

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=85.23  E-value=14  Score=34.95  Aligned_cols=139  Identities=9%  Similarity=0.021  Sum_probs=71.9

Q ss_pred             eEEeeCCCCceeEccCCCCCCccce--eeeecCCEEEEEcCCceeeeecCCCCceeecCCCCC--CCCCCEEEE---ECC
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFL--LRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDAPRV--WRTDPVVAL---VGD  155 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~--~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~--~~~~~~~~~---~~~  155 (316)
                      +..||+..+++..... +.++....  ......+.|++-.. +.+++||+.++++..+.....  .......+.   .++
T Consensus       429 l~~~~~~~~~~~~~~~-~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g  506 (781)
T 3v9f_A          429 ISYYNTRLKKFQIIEL-EKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG  506 (781)
T ss_dssp             EEEECSSSCEEEECCS-TTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC
T ss_pred             EEEEcCCCCcEEEecc-CCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC
Confidence            4456666666665531 11111111  21223466666544 679999999998877642220  011222221   134


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGP  234 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~  234 (316)
                      .+++...       ...+..||..+++++..... ......   ...+++.. +|.+|+... .+.|..||+.++++..+
T Consensus       507 ~lWigt~-------~~Gl~~~~~~~~~~~~~~~~-~~l~~~---~i~~i~~d~~g~lWi~T~-~Glv~~~d~~~~~~~~~  574 (781)
T 3v9f_A          507 RFWIGTF-------GGGVGIYTPDMQLVRKFNQY-EGFCSN---TINQIYRSSKGQMWLATG-EGLVCFPSARNFDYQVF  574 (781)
T ss_dssp             CEEEEES-------SSCEEEECTTCCEEEEECTT-TTCSCS---CEEEEEECTTSCEEEEET-TEEEEESCTTTCCCEEE
T ss_pred             CEEEEEc-------CCCEEEEeCCCCeEEEccCC-CCCCCC---eeEEEEECCCCCEEEEEC-CCceEEECCCCCcEEEc
Confidence            5555421       12367789988888776321 101111   11134443 577888664 34449999999887654


Q ss_pred             C
Q 040781          235 F  235 (316)
Q Consensus       235 ~  235 (316)
                      .
T Consensus       575 ~  575 (781)
T 3v9f_A          575 Q  575 (781)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=85.18  E-value=8.9  Score=32.50  Aligned_cols=109  Identities=9%  Similarity=-0.045  Sum_probs=49.7

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV  192 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~  192 (316)
                      ..|+..+..+.+.+||...+....+......  -..++.. +.+.++.++.      ...+.+||..+++-...-..+..
T Consensus       121 ~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------d~~i~iwd~~~~~~~~~~~~~~~  192 (425)
T 1r5m_A          121 NSIVTGVENGELRLWNKTGALLNVLNFHRAP--IVSVKWNKDGTHIISMDV------ENVTILWNVISGTVMQHFELKET  192 (425)
T ss_dssp             SEEEEEETTSCEEEEETTSCEEEEECCCCSC--EEEEEECTTSSEEEEEET------TCCEEEEETTTTEEEEEECCC--
T ss_pred             CEEEEEeCCCeEEEEeCCCCeeeeccCCCcc--EEEEEECCCCCEEEEEec------CCeEEEEECCCCcEEEEeecccc
Confidence            3443333457899999433333334211111  1122222 2344444432      23478888877654332111110


Q ss_pred             ccc--------CccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          193 LKD--------SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       193 ~~~--------~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ...        ........++...+..++.++..+.|..||+.+..
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~  238 (425)
T 1r5m_A          193 GGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKT  238 (425)
T ss_dssp             -------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSS
T ss_pred             CccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCc
Confidence            000        00000113333434446666677789999998764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=85.17  E-value=16  Score=30.85  Aligned_cols=111  Identities=17%  Similarity=0.165  Sum_probs=53.8

Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCcc
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWS  232 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~  232 (316)
                      ++.++.|+.+      ..+.++|..++.-... ...+.. .........++++. ++.+.+.+...+.|..||..+.+-.
T Consensus       261 ~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~  333 (380)
T 3iz6_a          261 GQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDR-NDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMV  333 (380)
T ss_dssp             SSEEEEECSS------SCEEEEETTTTEEEEEECCCCSS-SCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEE
T ss_pred             CCeEEEEcCC------CeEEEEECCCCcEEEEecccccc-cccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceE
Confidence            4555555532      3488888887653222 111110 00000001134443 5666667777788999998766521


Q ss_pred             -CCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          233 -GPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       233 -~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                       .+..+... ...... +.....+|+.++.|+.+..     +.||.+.
T Consensus       334 ~~~~~~~~~-h~~~v~-~l~~s~dg~~l~sgs~D~~-----i~iW~~~  374 (380)
T 3iz6_a          334 LNLGTLQNS-HEGRIS-CLGLSSDGSALCTGSWDKN-----LKIWAFS  374 (380)
T ss_dssp             EEECCSCSS-CCCCCC-EEEECSSSSEEEEECTTSC-----EEEEECC
T ss_pred             EEEecccCC-CCCceE-EEEECCCCCEEEEeeCCCC-----EEEEecC
Confidence             11111111 001111 1122346666666654433     9999987

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=85.11  E-value=13  Score=30.51  Aligned_cols=137  Identities=9%  Similarity=-0.077  Sum_probs=68.3

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeeeecCCEEEEEc-CC----ceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CC
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRSSHSTLLYTLS-PS----KLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GD  155 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s~~~~l~~~g-g~----~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~  155 (316)
                      +..+|+..++...+.. ...........+..|.+++.+ +.    ..++++|+.++.... +........-..++.. ++
T Consensus        68 i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g  146 (333)
T 2dg1_A           68 IFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG  146 (333)
T ss_dssp             EEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS
T ss_pred             EEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC
Confidence            6678887766654421 111111122233345566654 32    479999999887653 2211111111122222 35


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPST  228 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~  228 (316)
                      ++++.............+..||..+++.+.+..-    .....    ++++.  +..+|+.....+.|..||+.+
T Consensus       147 ~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~----~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          147 GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN----ISVAN----GIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE----ESSEE----EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CEEEEeccccccCCCceEEEEeCCCCEEEEeecC----CCccc----ceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            6666542111111234677888877666544210    00111    34443  346888876667889999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=84.79  E-value=7.7  Score=31.68  Aligned_cols=104  Identities=12%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             CCEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      +..|...+..+.+.+||..+++... +.... . .-..++.. +.+.++.|+.+      ..+.++|..++. .....+.
T Consensus        67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~-~-~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~~-~~~~~~~  137 (304)
T 2ynn_A           67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHP-D-YIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNW-ALEQTFE  137 (304)
T ss_dssp             GTEEEEEETTSEEEEEETTTCCEEEEEECCS-S-CEEEEEECSSSSEEEEEETT------SCEEEEEGGGTT-EEEEEEC
T ss_pred             CCEEEEECCCCEEEEEECCCCcEEEEEeCCC-C-cEEEEEEcCCCCEEEEECCC------CeEEEEECCCCc-chhhhhc
Confidence            3444433345789999998876432 21100 0 00122222 23455555432      347888876541 1111110


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                         .+..  ...++++.  ++.+.+.++..+.|..||+.+..
T Consensus       138 ---~h~~--~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~  174 (304)
T 2ynn_A          138 ---GHEH--FVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST  174 (304)
T ss_dssp             ---CCCS--CEEEEEECTTCTTEEEEEETTSEEEEEETTCSS
T ss_pred             ---ccCC--cEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC
Confidence               1111  11144554  45677777788899999987644

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=84.73  E-value=5.4  Score=32.68  Aligned_cols=100  Identities=8%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             CEEEEEcCCceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP  190 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p  190 (316)
                      ..|...+..+.+.+||..++.... +.....+ . ..+... +.+.++.|+.      ...+.+||..+++=... ..- 
T Consensus        26 ~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~-v-~~~~~~~~~~~l~s~s~------d~~i~vwd~~~~~~~~~~~~h-   96 (304)
T 2ynn_A           26 PWVLTTLYSGRVELWNYETQVEVRSIQVTETP-V-RAGKFIARKNWIIVGSD------DFRIRVFNYNTGEKVVDFEAH-   96 (304)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSC-E-EEEEEEGGGTEEEEEET------TSEEEEEETTTCCEEEEEECC-
T ss_pred             CEEEEEcCCCcEEEEECCCCceeEEeeccCCc-E-EEEEEeCCCCEEEEECC------CCEEEEEECCCCcEEEEEeCC-
Confidence            333333345789999998875432 2111111 0 012122 3344555542      35588999887652211 111 


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~  229 (316)
                         ...    ..++++. ++.+.+.++..+.|..||+.++
T Consensus        97 ---~~~----v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  129 (304)
T 2ynn_A           97 ---PDY----IRSIAVHPTKPYVLSGSDDLTVKLWNWENN  129 (304)
T ss_dssp             ---SSC----EEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred             ---CCc----EEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence               111    1134444 3556666777788999998765

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=84.59  E-value=8.4  Score=31.40  Aligned_cols=20  Identities=30%  Similarity=0.214  Sum_probs=15.2

Q ss_pred             EEEEEecccceEEEeeCCCC
Q 040781          210 QLYVTEKYSGITVSFDPSTK  229 (316)
Q Consensus       210 ~~y~~~~~~~~i~~yD~~~~  229 (316)
                      .+.+.++..+.|..||+.+.
T Consensus       231 ~~l~s~~~dg~i~iwd~~~~  250 (351)
T 3f3f_A          231 QLIATGCKDGRIRIFKITEK  250 (351)
T ss_dssp             EEEEEEETTSCEEEEEEEEC
T ss_pred             eEEEEEcCCCeEEEEeCCCC
Confidence            67777777778899988754

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=84.49  E-value=6.7  Score=33.09  Aligned_cols=100  Identities=13%  Similarity=0.021  Sum_probs=51.3

Q ss_pred             EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE----CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCC
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV----GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSM  189 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~----~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~  189 (316)
                      .++..+..+.+.+||..+++....-.....  ...+...    +..+++.|+.+      ..+.+||..+++-... ...
T Consensus       114 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~~~~~  185 (408)
T 4a11_B          114 MFTSSSFDKTLKVWDTNTLQTADVFNFEET--VYSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHILQGH  185 (408)
T ss_dssp             CEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEEECCC
T ss_pred             EEEEEeCCCeEEEeeCCCCccceeccCCCc--eeeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeeeecCC
Confidence            444444457899999988765443221111  1112111    22355555432      3488898876542211 111


Q ss_pred             CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          190 PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                          ...    ..++++.  +..+++.++..+.|..||+.+..
T Consensus       186 ----~~~----v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          186 ----RQE----ILAVSWSPRYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             ----CSC----EEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred             ----CCc----EEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence                111    1133443  23366677777889999997654

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=84.48  E-value=6  Score=33.85  Aligned_cols=108  Identities=15%  Similarity=0.018  Sum_probs=51.7

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP  190 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p  190 (316)
                      ..|+..+..+.+.+||..+++....-...  .....++..  +.++++.|+.+      ..+.+||..++.-... ....
T Consensus       178 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~~~~~~~~~  249 (393)
T 1erj_A          178 DKLVSGSGDRTVRIWDLRTGQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSEN  249 (393)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECS--SCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC---
T ss_pred             CEEEEecCCCcEEEEECCCCeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcEEEeecccc
Confidence            34333334578899998887654321111  111122222  45566666532      3488999887653222 1100


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      . ..........++++. ++.+.+.++..+.|..||+.+..
T Consensus       250 ~-~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~  289 (393)
T 1erj_A          250 E-SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  289 (393)
T ss_dssp             ----CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             c-CCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence            0 001111111234444 45666677777889999997654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=84.23  E-value=14  Score=31.41  Aligned_cols=149  Identities=11%  Similarity=0.081  Sum_probs=70.6

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecC--CCCC--CCCCC--EEEEEC--CEEEEEcCcCCCCCCCcEEEEEeCCCCCe
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVD--APRV--WRTDP--VVALVG--DKVVVAGGACDFEDDPLAVEMYSVDTRTW  183 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp--~~~~--~~~~~--~~~~~~--~~v~~~gg~~~~~~~~~~v~vy~~~t~~W  183 (316)
                      ++.+++.| ..+.+.+||..++....-.  +...  .....  .++...  ..+++.|+.+      ..+.+||..+++.
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d------g~i~iwd~~~~~~  166 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD------NVILVWDVGTGAA  166 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT------SCEEEEETTTTEE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC------CEEEEEECCCCCc
Confidence            34344444 4578999998887542110  0000  01111  222222  2355555432      3488999888754


Q ss_pred             eecCC-CCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcC-CCCCcccceeeeeeEeeCCEEEE
Q 040781          184 EICQS-MPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHL-RQFDHEKKVFYSVITFANDRLIA  260 (316)
Q Consensus       184 ~~~~~-~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l-~~~~~~~~~~~~~l~~~~g~L~v  260 (316)
                      ...-. ...  .....    +++.. ++.+.+.++..+.|..||+.+.+-  +..+ ....  ...........+|++++
T Consensus       167 ~~~~~~~~~--~~~v~----~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~l~  236 (402)
T 2aq5_A          167 VLTLGPDVH--PDTIY----SVDWSRDGALICTSCRDKRVRVIEPRKGTV--VAEKDRPHE--GTRPVHAVFVSEGKILT  236 (402)
T ss_dssp             EEEECTTTC--CSCEE----EEEECTTSSCEEEEETTSEEEEEETTTTEE--EEEEECSSC--SSSCCEEEECSTTEEEE
T ss_pred             cEEEecCCC--CCceE----EEEECCCCCEEEEEecCCcEEEEeCCCCce--eeeeccCCC--CCcceEEEEcCCCcEEE
Confidence            33211 101  11111    34444 455666666778899999987652  1112 1110  01011122234677777


Q ss_pred             EecCCCCCCcceeeEEEee
Q 040781          261 VGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       261 ~g~~~~~~~~~~~~iw~l~  279 (316)
                      +|....  ....+.+|.+.
T Consensus       237 ~g~~~~--~d~~i~iwd~~  253 (402)
T 2aq5_A          237 TGFSRM--SERQVALWDTK  253 (402)
T ss_dssp             EEECTT--CCEEEEEEETT
T ss_pred             EeccCC--CCceEEEEcCc
Confidence            763211  12347788776

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=84.18  E-value=12  Score=37.42  Aligned_cols=139  Identities=13%  Similarity=0.084  Sum_probs=70.0

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCc
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPA  191 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~  191 (316)
                      ..+...+..+.+.+||..+++...+......  -..+... +.++ +.++.      ...+.+||..+++-... ... .
T Consensus      1016 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--v~~~~~~~~~~l-~~~~~------dg~v~vwd~~~~~~~~~~~~~-~ 1085 (1249)
T 3sfz_A         1016 KTLISSSEDSVIQVWNWQTGDYVFLQAHQET--VKDFRLLQDSRL-LSWSF------DGTVKVWNVITGRIERDFTCH-Q 1085 (1249)
T ss_dssp             SCEEEECSSSBEEEEETTTTEEECCBCCSSC--EEEEEECSSSEE-EEEES------SSEEEEEETTTTCCCEEEECC-S
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEecCCCc--EEEEEEcCCCcE-EEEEC------CCcEEEEECCCCceeEEEccc-C
Confidence            3443333457899999999877654321111  1122222 3344 33432      24588999887653221 111 0


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCc
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDV  270 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~  270 (316)
                        . ...    ++++. ++.+.+.++..+.|..||..+..  .+..+...  ..... +.....+|++++.++...    
T Consensus      1086 --~-~v~----~~~~s~d~~~l~s~s~d~~v~iwd~~~~~--~~~~l~~h--~~~v~-~~~~s~dg~~lat~~~dg---- 1149 (1249)
T 3sfz_A         1086 --G-TVL----SCAISSDATKFSSTSADKTAKIWSFDLLS--PLHELKGH--NGCVR-CSAFSLDGILLATGDDNG---- 1149 (1249)
T ss_dssp             --S-CCC----CEEECSSSSSCEEECCSSCCCEECSSSSS--CSBCCCCC--SSCEE-EEEECSSSSEEEEEETTS----
T ss_pred             --C-cEE----EEEECCCCCEEEEEcCCCcEEEEECCCcc--eeeeeccC--CCcEE-EEEECCCCCEEEEEeCCC----
Confidence              0 011    22232 45556666667788999987655  22222222  01111 122234666666665433    


Q ss_pred             ceeeEEEee
Q 040781          271 KSLKIWQVN  279 (316)
Q Consensus       271 ~~~~iw~l~  279 (316)
                       .+.+|.++
T Consensus      1150 -~i~vwd~~ 1157 (1249)
T 3sfz_A         1150 -EIRIWNVS 1157 (1249)
T ss_dssp             -CCCEEESS
T ss_pred             -EEEEEECC
Confidence             28899887

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=83.97  E-value=6.8  Score=33.30  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=52.9

Q ss_pred             CEEEEEc-CCceeeeecCCCC-----ceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC---
Q 040781          114 TLLYTLS-PSKLSFSFDPLHL-----AWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT---  182 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~-----~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~---  182 (316)
                      +.+++.| ..+.+.+||..+.     ....+.....  .-..+...  +.++++.|+.+      ..+.+||..++.   
T Consensus        79 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~  150 (416)
T 2pm9_A           79 NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSS--SVKTVKFNAKQDNVLASGGNN------GEIFIWDMNKCTESP  150 (416)
T ss_dssp             SSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSS--CCCEEEECSSSTTBEEEECSS------SCEEBCBTTTTSSCT
T ss_pred             CCeEEEEccCCeEEEeecccccccccchhhccCCcc--ceEEEEEcCCCCCEEEEEcCC------CeEEEEECCCCcccc
Confidence            3333444 4468999998771     2233321111  11233333  24555555532      348888887764   


Q ss_pred             ---eee-cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          183 ---WEI-CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       183 ---W~~-~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                         -.. ...... ......    ++++.  ++.+++.++..+.|..||+.+.+
T Consensus       151 ~~~~~~~~~~~~~-~~~~v~----~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  199 (416)
T 2pm9_A          151 SNYTPLTPGQSMS-SVDEVI----SLAWNQSLAHVFASAGSSNFASIWDLKAKK  199 (416)
T ss_dssp             TTCCCBCCCCSCC-SSCCCC----EEEECSSCTTEEEEESSSSCEEEEETTTTE
T ss_pred             ccccccccccccC-CCCCee----EEEeCCCCCcEEEEEcCCCCEEEEECCCCC
Confidence               111 111100 011111    44444  25677777777889999998765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=83.74  E-value=6.5  Score=32.13  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=55.7

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ++.||.++ ..+.++.|||.+++...+.....   -.+++.. ++++++..        ...+.+||..+++.+.+...+
T Consensus        24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~---~~~i~~~~dG~l~v~~--------~~~l~~~d~~~g~~~~~~~~~   92 (297)
T 3g4e_A           24 SNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAP---VSSVALRQSGGYVATI--------GTKFCALNWKEQSAVVLATVD   92 (297)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEEEECSSC---EEEEEEBTTSSEEEEE--------TTEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEEEEeCCCc---eEEEEECCCCCEEEEE--------CCeEEEEECCCCcEEEEEecC
Confidence            46666665 45789999999987654422111   1122222 34555442        145889999999887764322


Q ss_pred             cccccCccccceeEEEe-CCEEEEEec-----------ccceEEEeeCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEK-----------YSGITVSFDPST  228 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~-----------~~~~i~~yD~~~  228 (316)
                      ........   ..+++. +|.+|+...           ..+.|+.+|+..
T Consensus        93 ~~~~~~~~---~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g  139 (297)
T 3g4e_A           93 NDKKNNRF---NDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH  139 (297)
T ss_dssp             TTCSSEEE---EEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS
T ss_pred             CCCCCCCC---CCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC
Confidence            11111100   134444 577887542           224678888753

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=83.70  E-value=4.9  Score=34.93  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=37.8

Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCC-CcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCc
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSM-PAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~-p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                      ..+++.|+.+      ..+.++|..++.-...... ..  ...-.    ++++.  ++.+.+.++..+.|..||++++..
T Consensus       132 ~~~lasGs~d------g~i~lWd~~~~~~~~~~~~~gH--~~~V~----~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          132 PSTVAVGSKG------GDIMLWNFGIKDKPTFIKGIGA--GGSIT----GLKFNPLNTNQFYASSMEGTTRLQDFKGNIL  199 (435)
T ss_dssp             TTCEEEEETT------SCEEEECSSCCSCCEEECCCSS--SCCCC----EEEECSSCTTEEEEECSSSCEEEEETTSCEE
T ss_pred             CCEEEEEeCC------CEEEEEECCCCCceeEEEccCC--CCCEE----EEEEeCCCCCEEEEEeCCCEEEEeeccCCce
Confidence            4456666532      3488888877654333211 11  11112    55554  456666777778899999987653

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=83.61  E-value=8.4  Score=31.86  Aligned_cols=63  Identities=6%  Similarity=-0.041  Sum_probs=31.1

Q ss_pred             CEEEEEcCCceeeeecCCC-Cce-eecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781          114 TLLYTLSPSKLSFSFDPLH-LAW-HHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWE  184 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t-~~w-~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~  184 (316)
                      ..++..+..+.+.+||..+ ++. ..+......  -..++.. +.+.++.++.      ...+.+||..+++-.
T Consensus       188 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~------d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          188 KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS--ISDMQFSPDLTYFITSSR------DTNSFLVDVSTLQVL  253 (369)
T ss_dssp             CEEEEEETTSEEEEEETTTTTEEEEEEECCSSC--EEEEEECTTSSEEEEEET------TSEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc--eeEEEECCCCCEEEEecC------CceEEEEECCCCcee
Confidence            3444433457899999887 332 222111110  1122222 3444455542      245888998876543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=83.29  E-value=5.8  Score=34.76  Aligned_cols=107  Identities=10%  Similarity=0.135  Sum_probs=58.7

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ++.||+......+.++|+.++....+.+..  ..-..+++.  +..+|+.......  ....+.+++.. +.+.....++
T Consensus       149 ~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~--~~P~~ia~d~~G~~lyvad~~~~~--~~~~v~~~~~~-g~~~~~~~l~  223 (430)
T 3tc9_A          149 HNHLYLVGEQHPTRLIDFEKEYVSTVYSGL--SKVRTICWTHEADSMIITNDQNNN--DRPNNYILTRE-SGFKVITELT  223 (430)
T ss_dssp             EEEEEEEEBTEEEEEEETTTTEEEEEECCC--SCEEEEEECTTSSEEEEEECCSCT--TSEEEEEEEGG-GTSCSEEEEE
T ss_pred             CCeEEEEeCCCcEEEEECCCCEEEEEecCC--CCcceEEEeCCCCEEEEEeCCCCc--ccceEEEEeCC-Cceeeeeeec
Confidence            577888763378999999988776653311  111123332  3458887632111  12345555543 3343111111


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  .....    ++++.  ++.+|+.....+.|..||+.+..
T Consensus       224 ~--~~~p~----giavdp~~g~lyv~d~~~~~V~~~~~~~~~  259 (430)
T 3tc9_A          224 K--GQNCN----GAETHPINGELYFNSWNAGQVFRYDFTTQE  259 (430)
T ss_dssp             E--CSSCC----CEEECTTTCCEEEEETTTTEEEEEETTTTE
T ss_pred             c--CCCce----EEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            1  11112    55565  58899998777789999998765

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=83.23  E-value=20  Score=30.24  Aligned_cols=132  Identities=10%  Similarity=0.033  Sum_probs=73.7

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeee-ecCCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEE--ECCEEE
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRS-SHSTLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL--VGDKVV  158 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~-s~~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~--~~~~v~  158 (316)
                      +..+++.......+.  +.......+.. ...+.||... ..+.++.+++..+....+..... ..-.++++  .+..+|
T Consensus        55 I~~i~~~g~~~~~~~--~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~-~~p~glavd~~~g~ly  131 (349)
T 3v64_C           55 IRQVLPHRSEYTLLL--NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL-ESPGGLAVDWVHDKLY  131 (349)
T ss_dssp             EEEECTTSCCEEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSC-SCCCEEEEETTTTEEE
T ss_pred             eEEEeCCCCeeEEee--cCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCC-CCccEEEEecCCCeEE
Confidence            556666665554442  21111111221 2458888876 45789999998776554422111 11124444  367888


Q ss_pred             EEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781          159 VAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG  230 (316)
Q Consensus       159 ~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~  230 (316)
                      +.-.      ....+++++.....-+.+..- .  .....    +++++  ++.+|+..... +.|..+|+....
T Consensus       132 ~~d~------~~~~I~~~~~dG~~~~~l~~~-~--l~~P~----~iavdp~~g~ly~td~~~~~~I~r~~~dG~~  193 (349)
T 3v64_C          132 WTDS------GTSRIEVANLDGAHRKVLLWQ-S--LEKPR----AIALHPMEGTIYWTDWGNTPRIEASSMDGSG  193 (349)
T ss_dssp             EEET------TTTEEEEEETTSCSCEEEECT-T--CSCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred             EEcC------CCCeEEEEcCCCCceEEEEeC-C--CCCcc----eEEEecCcCeEEEeccCCCCEEEEEeCCCCC
Confidence            8753      234688888775542322110 0  01112    67777  78999998655 789999987644

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=83.18  E-value=18  Score=29.86  Aligned_cols=132  Identities=8%  Similarity=-0.020  Sum_probs=69.8

Q ss_pred             eEEeeCCCCceeEccCCCCCCccceeeee-cCCEEEEEc-CCceeeeecCCC----CceeecCCCCCCCCCCEEEE--EC
Q 040781           83 AHAYDARSHVWIEIKNNQPSSFDFLLRSS-HSTLLYTLS-PSKLSFSFDPLH----LAWHHVDAPRVWRTDPVVAL--VG  154 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~~~~~~~~~~~s-~~~~l~~~g-g~~~~~v~np~t----~~w~~lp~~~~~~~~~~~~~--~~  154 (316)
                      +..+|........+-  +.......+... .++.||... ..+.++++++.+    .....+-+.. ...-.++++  .+
T Consensus        12 I~~i~~~~~~~~~~~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~p~glavd~~~   88 (316)
T 1ijq_A           12 VRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRD-IQAPDGLAVDWIH   88 (316)
T ss_dssp             EEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSS-CSCCCEEEEETTT
T ss_pred             EEEEECCCcceEehh--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCC-CCCcCEEEEeecC
Confidence            566777766555442  221111122222 357888876 457899999876    2222221111 111234554  36


Q ss_pred             CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe--CCEEEEEeccc-ceEEEeeCCCCC
Q 040781          155 DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYS-GITVSFDPSTKG  230 (316)
Q Consensus       155 ~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~-~~i~~yD~~~~~  230 (316)
                      ..+|+.-.      ....+++++.....=+.+... .  .....    ++++.  ++.+|+..... +.|..+|+....
T Consensus        89 ~~ly~~d~------~~~~I~~~~~~g~~~~~~~~~-~--~~~P~----~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           89 SNIYWTDS------VLGTVSVADTKGVKRKTLFRE-N--GSKPR----AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             TEEEEEET------TTTEEEEEETTSSSEEEEEEC-T--TCCEE----EEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CeEEEEEC------CCCEEEEEeCCCCceEEEEEC-C--CCCcc----eEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            78888753      235688888875432222110 0  11112    66775  78999987543 689999987543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=83.01  E-value=9.5  Score=31.37  Aligned_cols=67  Identities=12%  Similarity=0.207  Sum_probs=34.3

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCC-CCCEEEEEC---CEEEEEcCcCCCCCCCcEEEEEeCCCC-Ceee
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWR-TDPVVALVG---DKVVVAGGACDFEDDPLAVEMYSVDTR-TWEI  185 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~-~~~~~~~~~---~~v~~~gg~~~~~~~~~~v~vy~~~t~-~W~~  185 (316)
                      +..|...+..+.+.+||..+++|..+....... .-..++...   ..+++.|+.+      ..+.++|..++ .|..
T Consensus        71 ~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~  142 (316)
T 3bg1_A           71 GNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEV  142 (316)
T ss_dssp             SSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEE
T ss_pred             CCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCcce
Confidence            344433334578999999887765432111111 111333321   3455555532      34778887765 5754

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=82.96  E-value=8.7  Score=33.07  Aligned_cols=61  Identities=13%  Similarity=0.197  Sum_probs=32.3

Q ss_pred             CEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          209 RQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       209 ~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      +.+.+.++..+.|..||+.+..=  +..+...   .....+.....+|+.++.++...     .+.+|.++
T Consensus       308 g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~-----~i~vwd~~  368 (410)
T 1vyh_C          308 GPFLLSGSRDKTIKMWDVSTGMC--LMTLVGH---DNWVRGVLFHSGGKFILSCADDK-----TLRVWDYK  368 (410)
T ss_dssp             CCEEEEEETTSEEEEEETTTTEE--EEEEECC---SSCEEEEEECSSSSCEEEEETTT-----EEEEECCT
T ss_pred             CCEEEEEeCCCeEEEEECCCCce--EEEEECC---CCcEEEEEEcCCCCEEEEEeCCC-----eEEEEECC
Confidence            55667777778899999987641  1111111   11111112233555555554333     38888776

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=82.95  E-value=17  Score=29.36  Aligned_cols=134  Identities=11%  Similarity=0.025  Sum_probs=67.8

Q ss_pred             eEEeeCCCCceeEccCCC----CCCccceeeeecC-CEEEEEcCCceeeeecCCCCceeec-CCCCC--C-CCCCEEEEE
Q 040781           83 AHAYDARSHVWIEIKNNQ----PSSFDFLLRSSHS-TLLYTLSPSKLSFSFDPLHLAWHHV-DAPRV--W-RTDPVVALV  153 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~----~~~~~~~~~~s~~-~~l~~~gg~~~~~v~np~t~~w~~l-p~~~~--~-~~~~~~~~~  153 (316)
                      +..||+..+++..+.. +    ............. +.+|+.+..+.+++||+. ++...+ .....  . ..-..++..
T Consensus        48 i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d  125 (314)
T 1pjx_A           48 ILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFD  125 (314)
T ss_dssp             EEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEEC
T ss_pred             EEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEEC
Confidence            6678877777665421 1    0001111222333 777777644589999998 777655 32111  1 111233332


Q ss_pred             -CCEEEEEcCcCC---------CCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-----CC-EEEEEecc
Q 040781          154 -GDKVVVAGGACD---------FEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-----SR-QLYVTEKY  217 (316)
Q Consensus       154 -~~~v~~~gg~~~---------~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-----~~-~~y~~~~~  217 (316)
                       ++++++......         .......+..||.. ++...+..  .  .....    ++++.     ++ .+|+.+..
T Consensus       126 ~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~--~~~~~----~i~~~~~~d~dg~~l~v~~~~  196 (314)
T 1pjx_A          126 YEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--A--FQFPN----GIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             TTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--E--ESSEE----EEEEEECTTSCEEEEEEEETT
T ss_pred             CCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--C--CCCcc----eEEEecccCCCCCEEEEEECC
Confidence             456776653210         00112457778776 55443311  0  00111    44444     23 68888766


Q ss_pred             cceEEEeeCC
Q 040781          218 SGITVSFDPS  227 (316)
Q Consensus       218 ~~~i~~yD~~  227 (316)
                      .+.|..||+.
T Consensus       197 ~~~i~~~~~~  206 (314)
T 1pjx_A          197 TKKLWSYDIK  206 (314)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCeEEEEECC
Confidence            6788999976

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=82.90  E-value=2.6  Score=35.47  Aligned_cols=97  Identities=14%  Similarity=0.244  Sum_probs=49.6

Q ss_pred             cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeee
Q 040781          171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYS  249 (316)
Q Consensus       171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~  249 (316)
                      ..+.++|..+++|.....+..  .+...  ..++++. ++.+.+.++..+.|..||..++.+..+..+...  ..... +
T Consensus        38 ~~i~iw~~~~~~~~~~~~~~~--~h~~~--v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h--~~~v~-~  110 (345)
T 3fm0_A           38 RRIRIWGTEGDSWICKSVLSE--GHQRT--VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGH--ENEVK-S  110 (345)
T ss_dssp             SCEEEEEEETTEEEEEEEECS--SCSSC--EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCC--SSCEE-E
T ss_pred             CeEEEEEcCCCcceeeeeecc--ccCCc--EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCC--CCCce-E
Confidence            348888888887753321111  11111  1134443 456666677777889999887765433323322  01111 1


Q ss_pred             eeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          250 VITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       250 ~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ....-+|++++.++...     .+.+|.++
T Consensus       111 v~~sp~~~~l~s~s~D~-----~v~iwd~~  135 (345)
T 3fm0_A          111 VAWAPSGNLLATCSRDK-----SVWVWEVD  135 (345)
T ss_dssp             EEECTTSSEEEEEETTS-----CEEEEEEC
T ss_pred             EEEeCCCCEEEEEECCC-----eEEEEECC
Confidence            11123566666665433     38888886

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=82.75  E-value=2.8  Score=35.05  Aligned_cols=58  Identities=12%  Similarity=0.062  Sum_probs=33.3

Q ss_pred             EEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecc--cceEEEeeCCCCCccCCC
Q 040781          172 AVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKY--SGITVSFDPSTKGWSGPF  235 (316)
Q Consensus       172 ~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~--~~~i~~yD~~~~~W~~~~  235 (316)
                      .+..+|..+++++.+.....  .....    .+++. ++.+|+.+..  .+.|..||+.+++.+.+.
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~--~~~p~----~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~   79 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAA--TQNPT----YLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLN   79 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEE--CSCCC----CEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeec--cCCcc----eEEEccCCeEEEEEecCCCceEEEEEecCCcEEEee
Confidence            35556677788776532211  11111    33333 5668887643  568899999877755444

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=82.72  E-value=2.8  Score=35.59  Aligned_cols=103  Identities=6%  Similarity=-0.041  Sum_probs=51.0

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCC----------CCCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPR----------VWRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVD  179 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~----------~~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~  179 (316)
                      ..|...+..+.+.+||..+++........          ......  .++..  +..+++.++      ....+.+||..
T Consensus        57 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~------~d~~i~iwd~~  130 (408)
T 4a11_B           57 RYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS------FDKTLKVWDTN  130 (408)
T ss_dssp             CEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE------TTSEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe------CCCeEEEeeCC
Confidence            33333334567999988876543321100          011111  22222  333444444      23458899988


Q ss_pred             CCCeeecCCCCcccccCccccceeEEEe----CCEEEEEecccceEEEeeCCCCC
Q 040781          180 TRTWEICQSMPAVLKDSAASTWLSVAVN----SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       180 t~~W~~~~~~p~~~~~~~~~~~~~~~~~----~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +++-......+.  .  ..    .+...    ++.+.+.++..+.|..||+.+..
T Consensus       131 ~~~~~~~~~~~~--~--~~----~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B          131 TLQTADVFNFEE--T--VY----SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             TTEEEEEEECSS--C--EE----EEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CCccceeccCCC--c--ee----eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            765433322211  0  01    11111    34466666677789999998664

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=82.72  E-value=15  Score=33.03  Aligned_cols=104  Identities=9%  Similarity=0.034  Sum_probs=53.8

Q ss_pred             EEEEEcCCceeeeecCCCCceee-cCCCCCCC-CCCEEEEE-C-CEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC-CC
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHH-VDAPRVWR-TDPVVALV-G-DKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ-SM  189 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~-lp~~~~~~-~~~~~~~~-~-~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~-~~  189 (316)
                      .++..+..+.+.+||..+++... +....... .-..++.. + .+.++.|+.+      ..+.+||..+++-...- ..
T Consensus       175 ~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~  248 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDD  248 (615)
T ss_dssp             EEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBT
T ss_pred             EEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEeccc
Confidence            33333345789999987765432 22111100 11123232 3 4555555432      34889998876543221 10


Q ss_pred             --CcccccCccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          190 --PAVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       190 --p~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        ..  ...    ..++++.++.+.+.++..+.|..||+.+.+
T Consensus       249 ~~~~--~~~----v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~  285 (615)
T 1pgu_A          249 QEPV--QGG----IFALSWLDSQKFATVGADATIRVWDVTTSK  285 (615)
T ss_dssp             TBCC--CSC----EEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccc--CCc----eEEEEEcCCCEEEEEcCCCcEEEEECCCCc
Confidence              11  111    113444356666666677789999998765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.61  E-value=26  Score=32.98  Aligned_cols=104  Identities=13%  Similarity=0.004  Sum_probs=52.3

Q ss_pred             CEEEEEcCCceeeeecCCCC-ceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHL-AWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~-~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ..|+..+..+.+.+||..++ .....-... ...-..++..  +...++.++.      ...+.+||..++.-.......
T Consensus       110 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~------dg~v~vwd~~~~~~~~~~~~~  182 (814)
T 3mkq_A          110 PYVLSGSDDLTVKLWNWENNWALEQTFEGH-EHFVMCVAFNPKDPSTFASGCL------DRTVKVWSLGQSTPNFTLTTG  182 (814)
T ss_dssp             SEEEEEETTSEEEEEEGGGTSEEEEEEECC-SSCEEEEEEETTEEEEEEEEET------TSEEEEEETTCSSCSEEEECC
T ss_pred             CEEEEEcCCCEEEEEECCCCceEEEEEcCC-CCcEEEEEEEcCCCCEEEEEeC------CCeEEEEECCCCcceeEEecC
Confidence            44444444578999998775 222211101 0111122333  3456666542      245889988665422211000


Q ss_pred             cccccCccccceeEEEe---CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN---SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~---~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  .....    .++..   ++.+.+.++..+.|..||..+..
T Consensus       183 ~--~~~v~----~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  219 (814)
T 3mkq_A          183 Q--ERGVN----YVDYYPLPDKPYMITASDDLTIKIWDYQTKS  219 (814)
T ss_dssp             C--TTCCC----EEEECCSTTCCEEEEECTTSEEEEEETTTTE
T ss_pred             C--CCCEE----EEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            0  01111    33333   56667777777889999997755

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=82.40  E-value=34  Score=32.40  Aligned_cols=158  Identities=9%  Similarity=0.062  Sum_probs=82.6

Q ss_pred             eEEeeCCCCceeEccCCC----CCC--ccceeeeecCCEEEEEcCCceeeeecCCCCceeecCC---CCCCCCCCEEEEE
Q 040781           83 AHAYDARSHVWIEIKNNQ----PSS--FDFLLRSSHSTLLYTLSPSKLSFSFDPLHLAWHHVDA---PRVWRTDPVVALV  153 (316)
Q Consensus        83 ~~~~d~~~~~w~~~~~~~----~~~--~~~~~~~s~~~~l~~~gg~~~~~v~np~t~~w~~lp~---~~~~~~~~~~~~~  153 (316)
                      +..||+..+++..... .    ..+  ..........|.|++.+. +.+++||+.++++ .+..   ..........+..
T Consensus       473 l~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~  549 (795)
T 4a2l_A          473 LVRFNPEQRSFTTIEK-EKDGTPVVSKQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIY  549 (795)
T ss_dssp             EEEEETTTTEEEECCB-CTTCCBCCCCCEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEE
T ss_pred             eeEEeCCCCeEEEccc-cccccccCCceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEE
Confidence            5567887777766532 1    000  011122223456666544 5799999998887 4321   1111112222222


Q ss_pred             ---CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecC---CCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeC
Q 040781          154 ---GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQ---SMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDP  226 (316)
Q Consensus       154 ---~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~---~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~  226 (316)
                         ++.+++...        ..+..||+.+++++...   .+|.  .     ...+++.. +|.+|+.+.  +.|..||+
T Consensus       550 ~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~--~-----~i~~i~~d~~g~lWi~t~--~Gl~~~~~  612 (795)
T 4a2l_A          550 EASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPN--N-----VVYGILEDSFGRLWLSTN--RGISCFNP  612 (795)
T ss_dssp             ECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSC--S-----CEEEEEECTTSCEEEEET--TEEEEEET
T ss_pred             ECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCch--h-----heEEEEECCCCCEEEEcC--CceEEEcC
Confidence               345665431        13778999888887653   2332  1     11244444 578888764  36799999


Q ss_pred             CCCCccCCCc---CCCCCccccee-eeeeEeeCCEEEEEecC
Q 040781          227 STKGWSGPFH---LRQFDHEKKVF-YSVITFANDRLIAVGLT  264 (316)
Q Consensus       227 ~~~~W~~~~~---l~~~~~~~~~~-~~~l~~~~g~L~v~g~~  264 (316)
                      .++++..+..   ++..    ... ...+...+|+|++.+..
T Consensus       613 ~~~~~~~~~~~dGl~~~----~f~~~~~~~~~~G~l~~g~~~  650 (795)
T 4a2l_A          613 ETEKFRNFTESDGLQSN----QFNTASYCRTSVGQMYFGGIN  650 (795)
T ss_dssp             TTTEEEEECGGGTCSCS----CEEEEEEEECTTSCEEEEETT
T ss_pred             CCCcEEEcCCcCCCccc----cCccCceeECCCCeEEEecCC
Confidence            9988764431   2211    111 12233446777776643

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=81.43  E-value=21  Score=29.43  Aligned_cols=149  Identities=8%  Similarity=0.050  Sum_probs=77.5

Q ss_pred             CCEEEEEc--CCceeeeecCCCCceeecCCCC-------CCCC-CCEEEEE-C-CEEEEEcCcCCCCCCCcEEEEEeCCC
Q 040781          113 STLLYTLS--PSKLSFSFDPLHLAWHHVDAPR-------VWRT-DPVVALV-G-DKVVVAGGACDFEDDPLAVEMYSVDT  180 (316)
Q Consensus       113 ~~~l~~~g--g~~~~~v~np~t~~w~~lp~~~-------~~~~-~~~~~~~-~-~~v~~~gg~~~~~~~~~~v~vy~~~t  180 (316)
                      ++.+|+..  +...+.+||+.......+....       .... -.++++. + ..+|+...      ....+.+||..+
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~------~~~~I~~~~~~~  227 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR------ENGRIQCFKTDT  227 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET------TTTEEEEEETTT
T ss_pred             CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC------CCCEEEEEECCC
Confidence            67788876  3678999996544334342111       0001 1234443 2 78888864      235699999987


Q ss_pred             CCeeecCCCCcccccCccccceeEEEeCCEEEEEec-------ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEe
Q 040781          181 RTWEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-------YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITF  253 (316)
Q Consensus       181 ~~W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-------~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~  253 (316)
                      ++....-..+. ......    ++++..+.+|...+       ....|..||+.+++....  +.........-....+.
T Consensus       228 G~~~~~~~~~~-~~~~~~----~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~--~~~~~~~~~~p~~ia~~  300 (329)
T 3fvz_A          228 KEFVREIKHAS-FGRNVF----AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV--FKPVRKHFDMPHDIVAS  300 (329)
T ss_dssp             CCEEEEECCTT-TTTCEE----EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEE--ECCSSSCCSSEEEEEEC
T ss_pred             CcEEEEEeccc-cCCCcc----eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEE--EcCCCCccCCeeEEEEC
Confidence            77644322111 011111    34444455555554       334789999887764322  11100000111112234


Q ss_pred             eCCEEEEEecCCCCCCcceeeEEEee
Q 040781          254 ANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       254 ~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      .+|.||+......     .|.+|.++
T Consensus       301 ~dG~lyvad~~~~-----~I~~~~~~  321 (329)
T 3fvz_A          301 EDGTVYIGDAHTN-----TVWKFTLT  321 (329)
T ss_dssp             TTSEEEEEESSSC-----CEEEEEEE
T ss_pred             CCCCEEEEECCCC-----EEEEEeCC
Confidence            4678888875433     37778776

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=81.38  E-value=0.97  Score=38.31  Aligned_cols=60  Identities=17%  Similarity=0.315  Sum_probs=31.9

Q ss_pred             cEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC-ccCCC
Q 040781          171 LAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG-WSGPF  235 (316)
Q Consensus       171 ~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~-W~~~~  235 (316)
                      ..+.+||..++.|+.+..+.. ......    ++++. ++.+.+.++..+.|..||+.++. |....
T Consensus        33 ~~i~iw~~~~~~~~~~~~~~~-h~~~v~----~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~   94 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTFSD-HDKIVT----CVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTL   94 (377)
T ss_dssp             SCBCEEEEETTEEEECCCBCC-CSSCEE----EEEECTTTCCEEEEETTSSEEEC------CCCCEE
T ss_pred             CEEEEEEccCCceEEEEEEec-CCceEE----EEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeee
Confidence            347788888888877655422 011111    34444 45566666677789999998876 54433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=81.00  E-value=22  Score=29.24  Aligned_cols=145  Identities=11%  Similarity=0.053  Sum_probs=72.0

Q ss_pred             CEEEEEcCCceeeeecCCCCce-eecCCCCCC-CCC--CEEEEE-C----CEEEEEcCcCCCCCCCcEEEEEeCCCCCee
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAW-HHVDAPRVW-RTD--PVVALV-G----DKVVVAGGACDFEDDPLAVEMYSVDTRTWE  184 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w-~~lp~~~~~-~~~--~~~~~~-~----~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~  184 (316)
                      ..++..++.+.+.+||..+++. ..+.....+ ...  ..++.. +    +++++.|+.      ...+.+||..+++=.
T Consensus        35 ~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~------dg~i~v~d~~~~~~~  108 (366)
T 3k26_A           35 PLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS------RGIIRIINPITMQCI  108 (366)
T ss_dssp             CEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET------TCEEEEECTTTCCEE
T ss_pred             ceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC------CCEEEEEEchhceEe
Confidence            4455555556899999887654 233211111 111  122222 2    456666653      245889998775422


Q ss_pred             ecCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCC-cCCCCCcccceeeeeeEeeCCEEEEE
Q 040781          185 ICQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPF-HLRQFDHEKKVFYSVITFANDRLIAV  261 (316)
Q Consensus       185 ~~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~-~l~~~~~~~~~~~~~l~~~~g~L~v~  261 (316)
                      ..  +.. ......    ++++.  ++.+.+.++..+.|..||+.+++-.... .+...  ..... +....-+++.++.
T Consensus       109 ~~--~~~-~~~~i~----~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~~v~-~~~~~~~~~~l~~  178 (366)
T 3k26_A          109 KH--YVG-HGNAIN----ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGH--RDEVL-SADYDLLGEKIMS  178 (366)
T ss_dssp             EE--EES-CCSCEE----EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSC--SSCEE-EEEECTTSSEEEE
T ss_pred             ee--ecC-CCCcEE----EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccc--cCcee-EEEECCCCCEEEE
Confidence            11  100 011111    34444  4566777777788999999876522111 01111  01111 1111234555566


Q ss_pred             ecCCCCCCcceeeEEEee
Q 040781          262 GLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       262 g~~~~~~~~~~~~iw~l~  279 (316)
                      ++...     .+.+|.++
T Consensus       179 ~~~dg-----~i~i~d~~  191 (366)
T 3k26_A          179 CGMDH-----SLKLWRIN  191 (366)
T ss_dssp             EETTS-----CEEEEESC
T ss_pred             ecCCC-----CEEEEECC
Confidence            64433     39999987

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=80.73  E-value=22  Score=30.64  Aligned_cols=146  Identities=14%  Similarity=0.139  Sum_probs=67.7

Q ss_pred             EEEEEcCCceeeeecCCCCce--eecCCCCC--CCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCC-eee
Q 040781          115 LLYTLSPSKLSFSFDPLHLAW--HHVDAPRV--WRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRT-WEI  185 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w--~~lp~~~~--~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~-W~~  185 (316)
                      .|...+..+.+.+||..++.-  ..+.+...  .....  .++..  +..+++.++      ....+.+||..+.. .+.
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~------~dg~i~i~d~~~~~~~~~  269 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVA------DDQKLMIWDTRNNNTSKP  269 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEE------TTSEEEEEETTCSCSSSC
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEe------CCCeEEEEECCCCCCCcc
Confidence            443333457899999877321  11111111  11111  22222  344555554      23568999998753 111


Q ss_pred             cCCCCcccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEec
Q 040781          186 CQSMPAVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGL  263 (316)
Q Consensus       186 ~~~~p~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~  263 (316)
                      +..+.   .+..  ...+++++  +..+++.++..+.|..||+.+.. ..+..+...  ..........-.+..+++.++
T Consensus       270 ~~~~~---~~~~--~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-~~~~~~~~h--~~~v~~i~~sp~~~~~l~s~~  341 (430)
T 2xyi_A          270 SHTVD---AHTA--EVNCLSFNPYSEFILATGSADKTVALWDLRNLK-LKLHSFESH--KDEIFQVQWSPHNETILASSG  341 (430)
T ss_dssp             SEEEE---CCSS--CEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-SCSEEEECC--SSCEEEEEECSSCTTEEEEEE
T ss_pred             eeEee---cCCC--CeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-CCeEEeecC--CCCEEEEEECCCCCCEEEEEe
Confidence            11110   1110  11134444  34478888888899999998643 122212211  011111111112335666665


Q ss_pred             CCCCCCcceeeEEEee
Q 040781          264 TGEAEDVKSLKIWQVN  279 (316)
Q Consensus       264 ~~~~~~~~~~~iw~l~  279 (316)
                      ...     .+.||.+.
T Consensus       342 ~d~-----~i~iwd~~  352 (430)
T 2xyi_A          342 TDR-----RLHVWDLS  352 (430)
T ss_dssp             TTS-----CCEEEEGG
T ss_pred             CCC-----cEEEEeCC
Confidence            433     38899887

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=80.41  E-value=19  Score=30.25  Aligned_cols=104  Identities=11%  Similarity=0.034  Sum_probs=52.9

Q ss_pred             CEEEEEcCCceeeeecCCCCc-------eeecCCCCCCCCCCEEEEE-C----C---EEEEEcCcCCCCCCCcEEEEEeC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLA-------WHHVDAPRVWRTDPVVALV-G----D---KVVVAGGACDFEDDPLAVEMYSV  178 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~-------w~~lp~~~~~~~~~~~~~~-~----~---~v~~~gg~~~~~~~~~~v~vy~~  178 (316)
                      ..|+..+..+.+.+||..+++       ...+......  -..+... +    +   +.++.++.+      ..+.+||.
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~g~~~~~l~s~~~d------g~i~iw~~   98 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG--LHHVDVLQAIERDAFELCLVATTSFS------GDLLFYRI   98 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTC--EEEEEEEEEEETTTEEEEEEEEEETT------SCEEEEEE
T ss_pred             CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCc--EEEEEEecccccCCccccEEEEEcCC------CCEEEEEc
Confidence            444333445789999988876       2222111111  0122222 2    4   666666532      34888888


Q ss_pred             CCCC------eeecCCCCcccccCccccceeEEEe-----CCEE-EEEecccceEEEeeCCC
Q 040781          179 DTRT------WEICQSMPAVLKDSAASTWLSVAVN-----SRQL-YVTEKYSGITVSFDPST  228 (316)
Q Consensus       179 ~t~~------W~~~~~~p~~~~~~~~~~~~~~~~~-----~~~~-y~~~~~~~~i~~yD~~~  228 (316)
                      .++.      +..+...+......   ....+++.     ++.+ .+.++..+.|..||+.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~  157 (397)
T 1sq9_A           99 TREDETKKVIFEKLDLLDSDMKKH---SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP  157 (397)
T ss_dssp             EECTTTCCEEEEEECCSCTTGGGS---CEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred             cCCcccccccceeecccccccCCC---cEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence            7766      55554331100000   11134444     3445 66666777899999987

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=80.10  E-value=11  Score=37.69  Aligned_cols=95  Identities=5%  Similarity=0.041  Sum_probs=51.9

Q ss_pred             CCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781          121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS  199 (316)
Q Consensus       121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~  199 (316)
                      ..+.+.+||..+++............. .++. -+++.++.++.      ...+.+||..++..........    ... 
T Consensus       981 ~~g~i~i~d~~~~~~~~~~~~h~~~v~-~l~~s~dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~~----~v~- 1048 (1249)
T 3sfz_A          981 EDGAIKIIELPNNRVFSSGVGHKKAVR-HIQFTADGKTLISSSE------DSVIQVWNWQTGDYVFLQAHQE----TVK- 1048 (1249)
T ss_dssp             TTSCCEEEETTTTSCEEECCCCSSCCC-CEEECSSSSCEEEECS------SSBEEEEETTTTEEECCBCCSS----CEE-
T ss_pred             CCCCEEEEEcCCCceeeecccCCCceE-EEEECCCCCEEEEEcC------CCEEEEEECCCCceEEEecCCC----cEE-
Confidence            457889999887664332111111111 2222 23445555542      2458899998887654322111    111 


Q ss_pred             cceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       200 ~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                         .+.+..+..++.++..+.|..||+.+++
T Consensus      1049 ---~~~~~~~~~l~~~~~dg~v~vwd~~~~~ 1076 (1249)
T 3sfz_A         1049 ---DFRLLQDSRLLSWSFDGTVKVWNVITGR 1076 (1249)
T ss_dssp             ---EEEECSSSEEEEEESSSEEEEEETTTTC
T ss_pred             ---EEEEcCCCcEEEEECCCcEEEEECCCCc
Confidence               3444444445666677789999998765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	3e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 135 WHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP 190
           W  V   +  R+   + +   ++ V GG  D      +VE Y  DT TW     M 
Sbjct: 223 WTFVAPMKHRRSALGITVHQGRIYVLGG-YDGHTFLDSVECYDPDTDTWSEVTRMT 277

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 24 DILEAILSQVPLIDLASACYVSRSWNRAVFSS 55
          ++L  I S + L +L     V + W R     
Sbjct: 7  ELLLGIFSCLCLPELLKVSGVCKRWYRLASDE 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.86
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	99.75
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.52
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.33
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.29
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.59
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.58
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.3
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	95.13
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	94.63
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	91.7
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	89.81
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.35
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	87.91
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	87.14
d1tbga_	340	beta1-subunit of the signal-transducing G protein	86.94
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	86.88
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	86.26
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	85.65
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	85.24
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	83.49
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	83.07
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	82.97
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	81.7
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	80.42

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.2e-20  Score=153.22  Aligned_cols=215  Identities=16%  Similarity=0.217  Sum_probs=147.7

Q ss_pred             eEEEEecCCCCCCCCCCceEEeeCCCCceeEccCCCCCC-ccceeeeecCCEEEEEcCC----------ceeeeecCCCC
Q 040781           65 WLLLHTQSQRTMAPYLTTAHAYDARSHVWIEIKNNQPSS-FDFLLRSSHSTLLYTLSPS----------KLSFSFDPLHL  133 (316)
Q Consensus        65 ~l~~~~~~~~~~~~~~~~~~~~d~~~~~w~~~~~~~~~~-~~~~~~~s~~~~l~~~gg~----------~~~~v~np~t~  133 (316)
                      .+++++...  . ..++.++.||+..++|..++  +++. +.....+..++.||++||.          +++++|||.++
T Consensus         6 ~iyv~GG~~--~-~~~~~~~~yd~~t~~W~~~~--~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~   80 (288)
T d1zgka1           6 LIYTAGGYF--R-QSLSYLEAYNPSNGTWLRLA--DLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTN   80 (288)
T ss_dssp             CEEEECCBS--S-SBCCCEEEEETTTTEEEECC--CCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             EEEEECCcC--C-CCCceEEEEECCCCeEEECC--CCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccc
Confidence            355666544  2 35667899999999999996  4432 2233344467999999982          57899999999


Q ss_pred             ceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCcc---------------
Q 040781          134 AWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAA---------------  198 (316)
Q Consensus       134 ~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~---------------  198 (316)
                      +|..+++++.+|..++.+.+++++|++||..... .....+.||..++.|......+.  .+..+               
T Consensus        81 ~w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~GG~  157 (288)
T d1zgka1          81 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGF  157 (288)
T ss_dssp             EEEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCB
T ss_pred             cccccccccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccccccc--ccccceeeeeeecceEecCc
Confidence            9999999999999999999999999999865433 45668899999999988866554  33322               


Q ss_pred             ----------------------------ccceeEEEeCCEEEEEecc-----cceEEEeeCCCCCccCCCcCCCCCcccc
Q 040781          199 ----------------------------STWLSVAVNSRQLYVTEKY-----SGITVSFDPSTKGWSGPFHLRQFDHEKK  245 (316)
Q Consensus       199 ----------------------------~~~~~~~~~~~~~y~~~~~-----~~~i~~yD~~~~~W~~~~~l~~~~~~~~  245 (316)
                                                  ....+.++.++.+|++||.     .+....||+.+++|..+..+|.+     
T Consensus       158 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-----  232 (288)
T d1zgka1         158 DGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHR-----  232 (288)
T ss_dssp             CSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSC-----
T ss_pred             ccccccceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceeeeeecceeeecccCccCc-----
Confidence                                        0001334444555555541     23456777777777766644433     


Q ss_pred             eeeeeeEeeCCEEEEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          246 VFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       246 ~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      ...+.++..+|+|+++||.........  +|.+|  ... ++|++++.||..
T Consensus       233 r~~~~~~~~~~~l~v~GG~~~~~~~~~--v~~yd--~~~-~~W~~~~~~p~~  279 (288)
T d1zgka1         233 RSALGITVHQGRIYVLGGYDGHTFLDS--VECYD--PDT-DTWSEVTRMTSG  279 (288)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSCBCCE--EEEEE--TTT-TEEEEEEECSSC
T ss_pred             ccceEEEEECCEEEEEecCCCCeecce--EEEEE--CCC-CEEEECCCCCCC
Confidence            223455667999999998755443333  46666  322 349999999876

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.8e-17  Score=138.37  Aligned_cols=169  Identities=18%  Similarity=0.247  Sum_probs=130.1

Q ss_pred             cCCEEEEEcCC-----ceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCC---CCCCcEEEEEeCCCCCe
Q 040781          112 HSTLLYTLSPS-----KLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDF---EDDPLAVEMYSVDTRTW  183 (316)
Q Consensus       112 ~~~~l~~~gg~-----~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~---~~~~~~v~vy~~~t~~W  183 (316)
                      .|..||++||.     +.+++|||.|++|.+++++|.+|..++++.+++++|++||....   ......+++||+.+++|
T Consensus         3 ~g~~iyv~GG~~~~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w   82 (288)
T d1zgka1           3 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW   82 (288)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             cCCEEEEECCcCCCCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccc
Confidence            46788999983     68899999999999999999999999999999999999986322   12456799999999999


Q ss_pred             eecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEE
Q 040781          184 EICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRL  258 (316)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L  258 (316)
                      +.+.++|.  ++..+    ++++.++++|++++     ....+..||+.++.|.....++.+     ......+...+++
T Consensus        83 ~~~~~~p~--~r~~~----~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----r~~~~~~~~~~~~  151 (288)
T d1zgka1          83 SPCAPMSV--PRNRI----GVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR-----RIGVGVAVLNRLL  151 (288)
T ss_dssp             EECCCCSS--CCBTC----EEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC-----CBSCEEEEETTEE
T ss_pred             cccccccc--eecce----eccccceeeEEecceecccccceeeeeccccCccccccccccc-----cccceeeeeeecc
Confidence            99999887  77777    88889999999987     234578899999999887755444     2334556678999


Q ss_pred             EEEecCCCCCCcceeeEEEeeccCCchhhhhhcCCCcH
Q 040781          259 IAVGLTGEAEDVKSLKIWQVNIKGGSLEELKEIGEMPK  296 (316)
Q Consensus       259 ~v~g~~~~~~~~~~~~iw~l~~~~~~~~~W~~i~~~p~  296 (316)
                      +++|+........  .++.++  ... ++|.....++.
T Consensus       152 ~~~GG~~~~~~~~--~~~~~d--~~~-~~~~~~~~~~~  184 (288)
T d1zgka1         152 YAVGGFDGTNRLN--SAECYY--PER-NEWRMITAMNT  184 (288)
T ss_dssp             EEECCBCSSCBCC--CEEEEE--TTT-TEEEECCCCSS
T ss_pred             eEecCcccccccc--eEEEee--ccc-ccccccccccc
Confidence            9999875544333  345555  322 33776655443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.52  E-value=2.8e-13  Score=117.25  Aligned_cols=215  Identities=10%  Similarity=0.059  Sum_probs=137.4

Q ss_pred             ceEEeeCCCCceeEccCCCCCCcc---ceeeeecCCEEEEEcC--CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CC
Q 040781           82 TAHAYDARSHVWIEIKNNQPSSFD---FLLRSSHSTLLYTLSP--SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GD  155 (316)
Q Consensus        82 ~~~~~d~~~~~w~~~~~~~~~~~~---~~~~~s~~~~l~~~gg--~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~  155 (316)
                      ..+.||+..++|...+. ...++.   ........+.+++.||  .+++.+|||.+++|..++.++.+|..+..+.+ +.
T Consensus        53 ~~~~yd~~t~~w~~~~~-~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTV-TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEE-EECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCC-CCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCC
Confidence            35679999999987642 111221   1123334688899886  36899999999999999999999998887776 57


Q ss_pred             EEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccC--cc------ccceeEEEeCCEEEEEecccceEEEeeCC
Q 040781          156 KVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDS--AA------STWLSVAVNSRQLYVTEKYSGITVSFDPS  227 (316)
Q Consensus       156 ~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~--~~------~~~~~~~~~~~~~y~~~~~~~~i~~yD~~  227 (316)
                      +|+++||..........+++||+.+++|+.+..++......  ..      .........++.+|+.++..+.+..||+.
T Consensus       132 ~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~  211 (387)
T d1k3ia3         132 RVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSG  211 (387)
T ss_dssp             CEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECST
T ss_pred             ceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcc
Confidence            99999987665557788999999999999886543211110  00      00011223357788888877788999999


Q ss_pred             CCCccCCCcCCCCCcc--cce--eeeeeEeeCCEEEEEecCCCCCC---cceeeEEEeeccCCchhhhhhcCCCcHH
Q 040781          228 TKGWSGPFHLRQFDHE--KKV--FYSVITFANDRLIAVGLTGEAED---VKSLKIWQVNIKGGSLEELKEIGEMPKA  297 (316)
Q Consensus       228 ~~~W~~~~~l~~~~~~--~~~--~~~~l~~~~g~L~v~g~~~~~~~---~~~~~iw~l~~~~~~~~~W~~i~~~p~~  297 (316)
                      +..|......+.+...  ...  ....+...+++++++|+......   .....+..+.........|+++..||..
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  288 (387)
T d1k3ia3         212 SGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA  288 (387)
T ss_dssp             TCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSC
T ss_pred             cCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccc
Confidence            9999866544332100  011  11223346899999998654322   1223334333111222347788888755

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.6e-13  Score=75.01  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=36.0

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      |+.||+|++.+||++||.+++.++++|||+|+++++++
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~   38 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE   38 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            57899999999999999999999999999999999765

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.29  E-value=3.4e-12  Score=110.19  Aligned_cols=157  Identities=10%  Similarity=0.042  Sum_probs=104.7

Q ss_pred             cCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCC-----CCCcEEEEEeCCCCCeeecCCCCcccccCcccccee
Q 040781          129 DPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFE-----DDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLS  203 (316)
Q Consensus       129 np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~-----~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~  203 (316)
                      .|.+++|...+++|..+...++...++||+++||.....     .....+++||+.+++|+....++....+..+   ..
T Consensus         5 ~p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~---~~   81 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP---GI   81 (387)
T ss_dssp             CTTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC---EE
T ss_pred             CCCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCccccee---EE
Confidence            488999999888777766555555588999999864321     2334588999999999887544331122222   02


Q ss_pred             EEEeCCEEEEEeccc-ceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCC-CcceeeEEEeecc
Q 040781          204 VAVNSRQLYVTEKYS-GITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAE-DVKSLKIWQVNIK  281 (316)
Q Consensus       204 ~~~~~~~~y~~~~~~-~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~-~~~~~~iw~l~~~  281 (316)
                      +...++.+|+.|+.. +.+..||+.+++|.....++.+    +......+..+|+++++|+..... ....+++|...  
T Consensus        82 ~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~----r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~--  155 (387)
T d1k3ia3          82 SMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVA----RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPS--  155 (387)
T ss_dssp             EECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSC----CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETT--
T ss_pred             EEecCCcEEEeecCCCcceeEecCccCccccccccccc----ccccceeeecCCceeeeccccccccccceeeeecCC--
Confidence            344578999998743 5789999999999998877766    333344445688999999864432 33445555544  


Q ss_pred             CCchhhhhhcCCCcHH
Q 040781          282 GGSLEELKEIGEMPKA  297 (316)
Q Consensus       282 ~~~~~~W~~i~~~p~~  297 (316)
                      .   ++|+.+..++..
T Consensus       156 ~---~~W~~~~~~~~~  168 (387)
T d1k3ia3         156 S---KTWTSLPNAKVN  168 (387)
T ss_dssp             T---TEEEEETTSCSG
T ss_pred             C---CceeecCCCccc
Confidence            3   349877655433

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-08  Score=69.77  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=37.1

Q ss_pred             CCCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           17 NNSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        17 ~~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      .+..||+||+..||++|++.||+++.+|||+|+.++.++
T Consensus        18 ~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~   56 (102)
T d2ovrb1          18 FISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN   56 (102)
T ss_dssp             TTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCH
Confidence            478899999999999999999999999999999999887

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.58  E-value=1.4e-08  Score=69.43  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=34.6

Q ss_pred             CCCCcHHHHHHHHhcCChhhhHHHhhhhHHHHHHhhc
Q 040781           18 NSIVHGDILEAILSQVPLIDLASACYVSRSWNRAVFS   54 (316)
Q Consensus        18 ~~~Lp~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s   54 (316)
                      +..||+||+.+||+.|++.+|++++.|||+|+.++.+
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            4579999999999999999999999999999999864

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2e-07  Score=65.65  Aligned_cols=38  Identities=26%  Similarity=0.344  Sum_probs=34.7

Q ss_pred             CCCCc----HHHHHHHHhcCChhhhHHHhhhhHHHHHHhhcc
Q 040781           18 NSIVH----GDILEAILSQVPLIDLASACYVSRSWNRAVFSS   55 (316)
Q Consensus        18 ~~~Lp----~dll~~IL~rLp~~~l~r~r~VcK~W~~li~s~   55 (316)
                      +..||    +||+..||+.|++.||.++.+|||+|+.++.++
T Consensus        11 i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~   52 (118)
T d1p22a1          11 ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG   52 (118)
T ss_dssp             HHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT
T ss_pred             HHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCH
Confidence            44577    599999999999999999999999999999887

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.13  E-value=0.11  Score=40.59  Aligned_cols=147  Identities=13%  Similarity=0.056  Sum_probs=70.6

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP  190 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p  190 (316)
                      +..+++| ..+.+.+||..+++...+........-..++.. ..+.++.|+.      ...+.+||..++..... ..+.
T Consensus       148 ~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------d~~i~~~~~~~~~~~~~~~~~~  221 (299)
T d1nr0a2         148 KQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ------SRKVIPYSVANNFELAHTNSWT  221 (299)
T ss_dssp             SCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET------TSCEEEEEGGGTTEESCCCCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccccccccccc
Confidence            3333444 347888998877765544211111111122222 2344444432      23488898877654432 2221


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED  269 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~  269 (316)
                      .   +...  ..++++. ++.+.+.++..+.|..||+.+.....+...... .....  ..+...+++.++.++.+.   
T Consensus       222 ~---h~~~--v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~-~~~~v--~~~~~~~~~~l~s~s~D~---  290 (299)
T d1nr0a2         222 F---HTAK--VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH-AMSSV--NSVIWLNETTIVSAGQDS---  290 (299)
T ss_dssp             C---CSSC--EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS-TTSCE--EEEEEEETTEEEEEETTS---
T ss_pred             c---cccc--cccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC-CCCcE--EEEEECCCCEEEEEeCCC---
Confidence            1   1111  1134443 566666777778899999987764332211111 00111  122233444555554333   


Q ss_pred             cceeeEEEee
Q 040781          270 VKSLKIWQVN  279 (316)
Q Consensus       270 ~~~~~iw~l~  279 (316)
                        .+.||.+-
T Consensus       291 --~i~iWdl~  298 (299)
T d1nr0a2         291 --NIKFWNVP  298 (299)
T ss_dssp             --CEEEEECC
T ss_pred             --EEEEEecc
Confidence              39999863

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.91  E-value=0.21  Score=39.67  Aligned_cols=149  Identities=6%  Similarity=-0.027  Sum_probs=70.1

Q ss_pred             CEEEEEcC-CceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCC
Q 040781          114 TLLYTLSP-SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMP  190 (316)
Q Consensus       114 ~~l~~~gg-~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p  190 (316)
                      ..+++.|+ .+.+.+||..+++............ ..+... +++.++.|+.+      ..+.+||..+++-... ....
T Consensus       159 ~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i-~~v~~~p~~~~l~~~~~d------~~v~~~d~~~~~~~~~~~~~~  231 (311)
T d1nr0a1         159 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFV-HSVRYNPDGSLFASTGGD------GTIVLYNGVDGTKTGVFEDDS  231 (311)
T ss_dssp             SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCE-EEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEECBCTT
T ss_pred             eeeecccccccccccccccccccccccccccccc-cccccCcccccccccccc------ccccccccccccccccccccc
Confidence            44445553 3678889887765443311111110 122222 34555555432      3478888877653322 1111


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAED  269 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~  269 (316)
                      . ..........++++. ++.+.+.++..+.|..||..+.+-  +..++.... .......+...++.|+..+..+    
T Consensus       232 ~-~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~--~~~l~~~~~-~~~~~~~~~~~~~~l~s~s~dG----  303 (311)
T d1nr0a1         232 L-KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV--EKTIPVGTR-IEDQQLGIIWTKQALVSISANG----  303 (311)
T ss_dssp             S-SSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE--EEEEECCSS-GGGCEEEEEECSSCEEEEETTC----
T ss_pred             c-ccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE--EEEEECCCC-ccceEEEEEecCCEEEEEECCC----
Confidence            1 011111111234444 456666677778899999987652  222222200 0111123333455665555332    


Q ss_pred             cceeeEEEee
Q 040781          270 VKSLKIWQVN  279 (316)
Q Consensus       270 ~~~~~iw~l~  279 (316)
                        .+.+|.+|
T Consensus       304 --~i~~wd~d  311 (311)
T d1nr0a1         304 --FINFVNPE  311 (311)
T ss_dssp             --CEEEEETT
T ss_pred             --EEEEEeCC
Confidence              28999874

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.59  Score=36.32  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=49.4

Q ss_pred             CceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccc
Q 040781          122 SKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTW  201 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~  201 (316)
                      .+.+.+||..+++........... ..++...+. .++.|+.+      ..+.+||..+.+-...-..+.  .+...  .
T Consensus       196 dg~i~~~d~~~~~~~~~~~~~~~~-v~~~~~~~~-~l~s~s~d------~~i~iwd~~~~~~~~~~~~~~--~~~~~--~  263 (342)
T d2ovrb2         196 DTSIRVWDVETGNCIHTLTGHQSL-TSGMELKDN-ILVSGNAD------STVKIWDIKTGQCLQTLQGPN--KHQSA--V  263 (342)
T ss_dssp             TSCEEEEETTTCCEEEEECCCCSC-EEEEEEETT-EEEEEETT------SCEEEEETTTCCEEEEECSTT--SCSSC--E
T ss_pred             CCeEEEeecccceeeeEecccccc-eeEEecCCC-EEEEEcCC------CEEEEEecccccccccccccc--eeeec--e
Confidence            467888988776643322111111 112333344 44445422      348899987765433211111  11111  1


Q ss_pred             eeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          202 LSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       202 ~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      ..+.. ++.+.+.++..+.|..||+.+++
T Consensus       264 ~~~~~-~~~~~~s~s~Dg~i~iwd~~tg~  291 (342)
T d2ovrb2         264 TCLQF-NKNFVITSSDDGTVKLWDLKTGE  291 (342)
T ss_dssp             EEEEE-CSSEEEEEETTSEEEEEETTTCC
T ss_pred             eeccc-CCCeeEEEcCCCEEEEEECCCCC
Confidence            12333 34555666677899999998876

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.70  E-value=2.2  Score=32.82  Aligned_cols=143  Identities=8%  Similarity=0.096  Sum_probs=74.2

Q ss_pred             CCEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          113 STLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       113 ~~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .|.+|+.. +...+.++++..+....+...........++.- +..+|+...      ....+.+||........+....
T Consensus       124 ~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~------~~~~V~~~d~~G~~~~~~g~~g  197 (279)
T d1q7fa_         124 KGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN------RAHCVKVFNYEGQYLRQIGGEG  197 (279)
T ss_dssp             TSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG------GGTEEEEEETTCCEEEEESCTT
T ss_pred             CCcEEEEeeccceeeEeccCCceeecccccccccccceeeeccceeEEeeec------cccceeeeecCCceeeeecccc
Confidence            35556554 456788898876544443211111111123222 357877764      2356899998776555553211


Q ss_pred             cccccCccccceeEEEe-CCEEEEEecc-cceEEEeeCCCCCccC-CC-cCCCCCcccceeeeeeEeeCCEEEEEecCCC
Q 040781          191 AVLKDSAASTWLSVAVN-SRQLYVTEKY-SGITVSFDPSTKGWSG-PF-HLRQFDHEKKVFYSVITFANDRLIAVGLTGE  266 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~-~~~~y~~~~~-~~~i~~yD~~~~~W~~-~~-~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~  266 (316)
                      .  .....    ++++. +|.+|+.... ...|..||++- ++.. +. .....     ......+..+|+|++... . 
T Consensus       198 ~--~~~P~----giavD~~G~i~Vad~~~~~~v~~f~~~G-~~~~~~~~~~~~~-----~p~~vav~~dG~l~V~~~-n-  263 (279)
T d1q7fa_         198 I--TNYPI----GVGINSNGEILIADNHNNFNLTIFTQDG-QLISALESKVKHA-----QCFDVALMDDGSVVLASK-D-  263 (279)
T ss_dssp             T--SCSEE----EEEECTTCCEEEEECSSSCEEEEECTTS-CEEEEEEESSCCS-----CEEEEEEETTTEEEEEET-T-
T ss_pred             c--ccCCc----ccccccCCeEEEEECCCCcEEEEECCCC-CEEEEEeCCCCCC-----CEeEEEEeCCCcEEEEeC-C-
Confidence            1  11112    56664 5679998754 34689999754 3221 11 01111     111222355788877652 2 


Q ss_pred             CCCcceeeEEEee
Q 040781          267 AEDVKSLKIWQVN  279 (316)
Q Consensus       267 ~~~~~~~~iw~l~  279 (316)
                          ..|.+|+..
T Consensus       264 ----~~v~~fr~~  272 (279)
T d1q7fa_         264 ----YRLYIYRYV  272 (279)
T ss_dssp             ----TEEEEEECS
T ss_pred             ----CeEEEEEee
Confidence                238888776

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=89.81  E-value=2.3  Score=36.73  Aligned_cols=110  Identities=20%  Similarity=0.225  Sum_probs=65.6

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCCC--------CCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPRV--------WRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~~--------~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .+|.||+....+.++..|+.|++  |+.-+....        .......+..+++||+...       ...+..+|..++
T Consensus        65 ~~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~g~l~Alda~tG  137 (560)
T d1kv9a2          65 HDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL-------DGRLIALDAKTG  137 (560)
T ss_dssp             ETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT-------TSEEEEEETTTC
T ss_pred             ECCEEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcceeCCeEEEEeC-------CCEEEEEECCCC
Confidence            57899988877889999999986  763321111        1112234456778777642       234666777776


Q ss_pred             C--eeecCCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781          182 T--WEICQSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS  232 (316)
Q Consensus       182 ~--W~~~~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~  232 (316)
                      +  |+.-..-+........    +..+.++.+++-..     ..+.|.+||..+.+  |+
T Consensus       138 ~~~w~~~~~~~~~~~~~~~----~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  193 (560)
T d1kv9a2         138 KAIWSQQTTDPAKPYSITG----APRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWR  193 (560)
T ss_dssp             CEEEEEECSCTTSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             cEEeccCccCcccceeeee----eeeeecCcccccccceeccccceEEEEECCCceEEee
Confidence            4  7664221110111222    45567788877543     23578999998886  54

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.35  E-value=3.8  Score=31.78  Aligned_cols=57  Identities=7%  Similarity=0.039  Sum_probs=36.3

Q ss_pred             eEEEe-CCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeE-eeCCEEEEEecC
Q 040781          203 SVAVN-SRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVIT-FANDRLIAVGLT  264 (316)
Q Consensus       203 ~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~-~~~g~L~v~g~~  264 (316)
                      ++++. +|.+|+..-..+.|..||++.+....+. +|.+    ...++..+ ...+.|||....
T Consensus       203 G~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~-lP~~----~~T~~~FGG~d~~~LyvTta~  261 (295)
T d2ghsa1         203 GSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYE-VPGK----QTTCPAFIGPDASRLLVTSAR  261 (295)
T ss_dssp             EEEECTTSCEEEEEETTTEEEEECTTCCEEEEEE-CSCS----BEEEEEEESTTSCEEEEEEBC
T ss_pred             ceEEcCCCCEEeeeeCCCceEEecCCCcEeeEec-CCCC----ceEEEEEeCCCCCEEEEEECC
Confidence            56664 5778887644568999999887766655 6654    22233333 334678888654

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=87.91  E-value=1.1  Score=34.18  Aligned_cols=99  Identities=22%  Similarity=0.188  Sum_probs=56.1

Q ss_pred             EEEEEc-CCceeeeecCCCCceee-cCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          115 LLYTLS-PSKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       115 ~l~~~g-g~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      .+|+.+ +.+.+.++|+.|++... ++-...+   ..+++.  +.++++.+..      ...+.+||..+++=..  .++
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g~~p---~~va~spdG~~l~v~~~~------~~~i~v~d~~t~~~~~--~~~   71 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVGSNP---MGAVISPDGTKVYVANAH------SNDVSIIDTATNNVIA--TVP   71 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSE---EEEEECTTSSEEEEEEGG------GTEEEEEETTTTEEEE--EEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECCCCc---eEEEEeCCCCEEEEEECC------CCEEEEEECCCCceee--eee
Confidence            467765 45789999999998643 3211111   234333  3457766542      2458999998765322  111


Q ss_pred             cccccCccccceeEEEe--CCEEEEEecccceEEEeeCCCCC
Q 040781          191 AVLKDSAASTWLSVAVN--SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      .  .....    ++++.  +..+++.+.....+..+|..+++
T Consensus        72 ~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (301)
T d1l0qa2          72 A--GSSPQ----GVAVSPDGKQVYVTNMASSTLSVIDTTSNT  107 (301)
T ss_dssp             C--SSSEE----EEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             c--ccccc----ccccccccccccccccccceeeecccccce
Confidence            1  11111    23332  45567666666678888988765

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.14  E-value=5.4  Score=30.94  Aligned_cols=98  Identities=7%  Similarity=0.022  Sum_probs=50.5

Q ss_pred             CceeeeecCCCCcee-ecCCCCCCCCCC--EEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCccccc
Q 040781          122 SKLSFSFDPLHLAWH-HVDAPRVWRTDP--VVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPAVLKD  195 (316)
Q Consensus       122 ~~~~~v~np~t~~w~-~lp~~~~~~~~~--~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~~~~~  195 (316)
                      .+.+.+||..+.+-. .+.... .....  .++..  ..++++.++.+      ..+.+||..+++-... ..-..  ..
T Consensus       181 d~~v~~~d~~~~~~~~~~~~~~-~~~~~v~~v~~~pd~~~~l~s~~~d------~~i~iwd~~~~~~~~~l~~~~~--~v  251 (325)
T d1pgua1         181 DGSVVFYQGPPFKFSASDRTHH-KQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDDQE--PV  251 (325)
T ss_dssp             TTEEEEEETTTBEEEEEECSSS-CTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBTTB--CC
T ss_pred             ccccccccccccccceeccccc-CCCCccEEeeeccccceeccccccc------cceeeeeecccccccccccccc--cc
Confidence            467778876554322 221111 11111  22222  24566656532      3488999887764332 21111  11


Q ss_pred             CccccceeEEEeCCEEEEEecccceEEEeeCCCCC
Q 040781          196 SAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       196 ~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                        ....+++...++.+.+.++..+.|..||+.+++
T Consensus       252 --~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~  284 (325)
T d1pgua1         252 --QGGIFALSWLDSQKFATVGADATIRVWDVTTSK  284 (325)
T ss_dssp             --CSCEEEEEESSSSEEEEEETTSEEEEEETTTTE
T ss_pred             --ccceeeeeccCCCEEEEEeCCCeEEEEECCCCC
Confidence              111123444566677777777889999998876

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.94  E-value=3.1  Score=31.94  Aligned_cols=96  Identities=8%  Similarity=0.008  Sum_probs=47.7

Q ss_pred             CceeeeecCCCCceee-cCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781          122 SKLSFSFDPLHLAWHH-VDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS  199 (316)
Q Consensus       122 ~~~~~v~np~t~~w~~-lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~  199 (316)
                      .+.+.+||..+++... +......  -..++.. +++.++.|+.+      ..+.+||..+..-........ ...... 
T Consensus       205 d~~v~i~d~~~~~~~~~~~~h~~~--i~~v~~~p~~~~l~s~s~d------~~i~~~~~~~~~~~~~~~~~~-~~~~i~-  274 (340)
T d1tbga_         205 DASAKLWDVREGMCRQTFTGHESD--INAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYSHDN-IICGIT-  274 (340)
T ss_dssp             TTEEEEEETTTTEEEEEECCCSSC--EEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCTT-CCSCEE-
T ss_pred             CceEEEEECCCCcEEEEEeCCCCC--eEEEEECCCCCEEEEEeCC------CeEEEEeeccccccccccccc-ccCceE-
Confidence            3678888877765432 2111100  0122222 34455555422      347788887665433211111 011111 


Q ss_pred             cceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          200 TWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       200 ~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                         .+++. ++.+.+.++..+.|..||..+.+
T Consensus       275 ---~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         275 ---SVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             ---EEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             ---EEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence               33333 45566667677889999987654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.88  E-value=0.78  Score=36.97  Aligned_cols=107  Identities=12%  Similarity=0.157  Sum_probs=57.6

Q ss_pred             CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCCcc
Q 040781          154 GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGWS  232 (316)
Q Consensus       154 ~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W~  232 (316)
                      +++.+++|+.      ...+.+||..++++..+..+.   .+...  ..++++. ++.+.+.++..+.|..||+.++.|.
T Consensus        18 dg~~la~~~~------~~~i~iw~~~~~~~~~~~~l~---gH~~~--V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_          18 DRTQIAICPN------NHEVHIYEKSGNKWVQVHELK---EHNGQ--VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             TSSEEEEECS------SSEEEEEEEETTEEEEEEEEE---CCSSC--EEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCEEEEEeC------CCEEEEEECCCCCEEEEEEec---CCCCC--EEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            3445555542      245889999888887664331   11111  1145554 4455556666778999999988876


Q ss_pred             CCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          233 GPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       233 ~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                      ....+....  ..... ....-+++.++++....     .+.+|.++
T Consensus        87 ~~~~~~~~~--~~v~~-i~~~p~~~~l~~~s~d~-----~i~i~~~~  125 (371)
T d1k8kc_          87 PTLVILRIN--RAARC-VRWAPNEKKFAVGSGSR-----VISICYFE  125 (371)
T ss_dssp             EEEECCCCS--SCEEE-EEECTTSSEEEEEETTS-----SEEEEEEE
T ss_pred             ccccccccc--ccccc-cccccccccceeecccC-----cceeeeee
Confidence            544333220  11111 11122455555553222     27788877

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.26  E-value=6.4  Score=30.91  Aligned_cols=107  Identities=15%  Similarity=0.003  Sum_probs=50.1

Q ss_pred             EEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEE--CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeec-CCCCc
Q 040781          115 LLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV--GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEIC-QSMPA  191 (316)
Q Consensus       115 ~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~--~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~-~~~p~  191 (316)
                      .++..+..+.+.+||..+.............  ......  +..+++.|+.+      ..+.+||..++..... .....
T Consensus       177 ~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d------~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             EEEEEETTSEEEEEETTTTEEEEEEECSSCE--EEEEECSTTCCEEEEEETT------SCEEEEETTTCCEEEEEC----
T ss_pred             cccccccceeeeeeecccccccccccccccc--ccccccCCCCCeEEEEcCC------CeEEEeecccCccceeeccccc
Confidence            3333334578888988776554432211111  111111  34555555432      3488899888765433 21111


Q ss_pred             ccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          192 VLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                       ..........++.+. ++.+.+.++..+.|..||+.+..
T Consensus       249 -~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~  287 (388)
T d1erja_         249 -SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN  287 (388)
T ss_dssp             ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred             -cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCc
Confidence             011111111233443 45566666677789999987665

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=85.65  E-value=7.3  Score=33.42  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             cCCEEEEEcCCceeeeecCCCCc--eeecCCCC--------CCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCC
Q 040781          112 HSTLLYTLSPSKLSFSFDPLHLA--WHHVDAPR--------VWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTR  181 (316)
Q Consensus       112 ~~~~l~~~gg~~~~~v~np~t~~--w~~lp~~~--------~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~  181 (316)
                      .+|.||+.+..+.++.+|+.|++  |+.=+..+        ........+..++++++...       ...+..+|..|+
T Consensus        76 ~~g~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~t~-------~g~l~alda~tG  148 (573)
T d1kb0a2          76 VDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-------DGRLIALDAATG  148 (573)
T ss_dssp             ETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT-------TSEEEEEETTTC
T ss_pred             ECCEEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEECCcEEEEec-------ccceeeeccccc
Confidence            57899998877889999999986  65322111        01112234556788777542       234666787777


Q ss_pred             C--eeec-CCCCcccccCccccceeEEEeCCEEEEEec-----ccceEEEeeCCCCC--cc
Q 040781          182 T--WEIC-QSMPAVLKDSAASTWLSVAVNSRQLYVTEK-----YSGITVSFDPSTKG--WS  232 (316)
Q Consensus       182 ~--W~~~-~~~p~~~~~~~~~~~~~~~~~~~~~y~~~~-----~~~~i~~yD~~~~~--W~  232 (316)
                      +  |+.- ..-+........    +..+.++.+++-..     ..+.|.+||..+++  |+
T Consensus       149 ~~~W~~~~~~~~~~~~~~~~----~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~  205 (573)
T d1kb0a2         149 KEVWHQNTFEGQKGSLTITG----APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWR  205 (573)
T ss_dssp             CEEEEEETTTTCCSSCBCCS----CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             cceecccCccCCcceEEeec----ceEEEeccEEEeeccccccccceEEEEecCCccceee
Confidence            5  8654 211110011122    34567788877432     24578999999876  65

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.24  E-value=6.4  Score=30.02  Aligned_cols=132  Identities=7%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             CCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcccccCccc
Q 040781          121 PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKDSAAS  199 (316)
Q Consensus       121 g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~~~~~  199 (316)
                      ....+.+||..+++............ ..... .....++.++.      ...+.+||..++.-...-.- .  ..... 
T Consensus       179 ~d~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------d~~i~i~d~~~~~~~~~~~~-h--~~~v~-  247 (355)
T d1nexb2         179 YDNTLIVWDVAQMKCLYILSGHTDRI-YSTIYDHERKRCISASM------DTTIRIWDLENGELMYTLQG-H--TALVG-  247 (355)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCE-EEEEEETTTTEEEEEET------TSCEEEEETTTCCEEEEECC-C--SSCCC-
T ss_pred             ccceeeeeecccccceeeeecccccc-ccccccccceeeecccc------cceEEeeecccccccccccc-c--ccccc-
Confidence            34577888877765443321111111 11111 12334444432      23478898887654322111 0  11111 


Q ss_pred             cceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcceeeEEEee
Q 040781          200 TWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKSLKIWQVN  279 (316)
Q Consensus       200 ~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~~~iw~l~  279 (316)
                         ++...+ .+.+.++..+.|..||+.+.. ..+. ....    ..........++++++.|..      ..+.||.++
T Consensus       248 ---~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~-~~~~----~~~~~~~~~~~~~~l~~g~d------~~i~vwd~~  311 (355)
T d1nexb2         248 ---LLRLSD-KFLVSAAADGSIRGWDANDYS-RKFS-YHHT----NLSAITTFYVSDNILVSGSE------NQFNIYNLR  311 (355)
T ss_dssp             ---EEEECS-SEEEEECTTSEEEEEETTTCC-EEEE-EECT----TCCCCCEEEECSSEEEEEET------TEEEEEETT
T ss_pred             ---cccccc-ceeeeeecccccccccccccc-eecc-cccC----CceEEEEEcCCCCEEEEEeC------CEEEEEECC
Confidence               344444 455666677889999997654 1111 0011    11111222446677666532      248999886

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=83.49  E-value=6.7  Score=30.23  Aligned_cols=100  Identities=15%  Similarity=0.028  Sum_probs=57.0

Q ss_pred             EEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEE-ECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCccccc
Q 040781          117 YTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVAL-VGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAVLKD  195 (316)
Q Consensus       117 ~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~-~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~~~~  195 (316)
                      +.++..+.+++||..++...+++.  ..+. ..++. -+++.+++.+..    ....+.++|..+++-+.+...+.  . 
T Consensus        18 ~a~~~~g~v~v~d~~~~~~~~~~~--~~~v-~~~~~spDg~~l~~~~~~----~g~~v~v~d~~~~~~~~~~~~~~--~-   87 (360)
T d1k32a3          18 IAFVSRGQAFIQDVSGTYVLKVPE--PLRI-RYVRRGGDTKVAFIHGTR----EGDFLGIYDYRTGKAEKFEENLG--N-   87 (360)
T ss_dssp             EEEEETTEEEEECTTSSBEEECSC--CSCE-EEEEECSSSEEEEEEEET----TEEEEEEEETTTCCEEECCCCCC--S-
T ss_pred             EEEEECCeEEEEECCCCcEEEccC--CCCE-EEEEECCCCCEEEEEEcC----CCCEEEEEECCCCcEEEeeCCCc--e-
Confidence            344444689999999998888742  1111 12222 245555544322    12358899999988776643211  1 


Q ss_pred             CccccceeEEEe-CCEEEEEecccceEEEeeCCCCCc
Q 040781          196 SAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       196 ~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                       ..    .+++. ++.+.+.++..+.+..+|..+..-
T Consensus        88 -v~----~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  119 (360)
T d1k32a3          88 -VF----AMGVDRNGKFAVVANDRFEIMTVDLETGKP  119 (360)
T ss_dssp             -EE----EEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred             -EE----eeeecccccccceeccccccccccccccce
Confidence             11    23333 455555555666788899887663

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.07  E-value=6.6  Score=30.42  Aligned_cols=111  Identities=13%  Similarity=0.117  Sum_probs=54.8

Q ss_pred             eeecCCEEEEEcCCceeeeecCCCCceee-cCCCCC-CCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCe
Q 040781          109 RSSHSTLLYTLSPSKLSFSFDPLHLAWHH-VDAPRV-WRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTW  183 (316)
Q Consensus       109 ~~s~~~~l~~~gg~~~~~v~np~t~~w~~-lp~~~~-~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W  183 (316)
                      ..+..|..++.|+.+.+.+||..+..-.. +..... .....  .++.. +++.++.|+.      ...+.+||....+.
T Consensus        58 ~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~------dg~i~iwd~~~~~~  131 (337)
T d1gxra_          58 TISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE------ASTLSIWDLAAPTP  131 (337)
T ss_dssp             EECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES------SSEEEEEECCCC--
T ss_pred             EECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec------cccccccccccccc
Confidence            33444554556666789999976643322 111111 11111  22222 3455555553      24588999877665


Q ss_pred             eecCCCCcccccCccccceeEEEe-CCEEEEEecccceEEEeeCCCCC
Q 040781          184 EICQSMPAVLKDSAASTWLSVAVN-SRQLYVTEKYSGITVSFDPSTKG  230 (316)
Q Consensus       184 ~~~~~~p~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~i~~yD~~~~~  230 (316)
                      +....+... .....    .+++. ++.+.+.++..+.|..||..+++
T Consensus       132 ~~~~~~~~~-~~~v~----~~~~~~~~~~l~s~~~d~~i~~~~~~~~~  174 (337)
T d1gxra_         132 RIKAELTSS-APACY----ALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             EEEEEEECS-SSCEE----EEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             ccccccccc-ccccc----ccccccccccccccccccccccccccccc
Confidence            544322110 11111    22333 44555556566678999988765

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.97  E-value=8.1  Score=29.39  Aligned_cols=141  Identities=9%  Similarity=-0.019  Sum_probs=68.6

Q ss_pred             CCEEEEEcCCceeeeecCCCCceeecCCCCCCCCCCEEEEECCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCcc
Q 040781          113 STLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALVGDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPAV  192 (316)
Q Consensus       113 ~~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~~  192 (316)
                      +..++..+..+.+.+||..++.....-...... -..+. ...+.++.|+.+      ..+.+||..+..=.......  
T Consensus       213 ~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~-v~~~~-~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~--  282 (355)
T d1nexb2         213 RKRCISASMDTTIRIWDLENGELMYTLQGHTAL-VGLLR-LSDKFLVSAAAD------GSIRGWDANDYSRKFSYHHT--  282 (355)
T ss_dssp             TTEEEEEETTSCEEEEETTTCCEEEEECCCSSC-CCEEE-ECSSEEEEECTT------SEEEEEETTTCCEEEEEECT--
T ss_pred             ceeeecccccceEEeeecccccccccccccccc-ccccc-cccceeeeeecc------cccccccccccceecccccC--
Confidence            345444444578899998887653321111111 11333 344555555532      45888888765422111100  


Q ss_pred             cccCccccceeEEEeCCEEEEEecccceEEEeeCCCCCccCCCcCCCCCcccceeeeeeEeeCCEEEEEecCCCCCCcce
Q 040781          193 LKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDPSTKGWSGPFHLRQFDHEKKVFYSVITFANDRLIAVGLTGEAEDVKS  272 (316)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~~~~~W~~~~~l~~~~~~~~~~~~~l~~~~g~L~v~g~~~~~~~~~~  272 (316)
                       .....    .....++.+.+.+ ..+.|..||+++++..... +...  ....  ..+...++.+++.++....     
T Consensus       283 -~~~~~----~~~~~~~~~l~~g-~d~~i~vwd~~tg~~~~~~-~~~~--~~~V--~~v~~~~~~~~~~~s~dg~-----  346 (355)
T d1nexb2         283 -NLSAI----TTFYVSDNILVSG-SENQFNIYNLRSGKLVHAN-ILKD--ADQI--WSVNFKGKTLVAAVEKDGQ-----  346 (355)
T ss_dssp             -TCCCC----CEEEECSSEEEEE-ETTEEEEEETTTCCBCCSC-TTTT--CSEE--EEEEEETTEEEEEEESSSC-----
T ss_pred             -CceEE----EEEcCCCCEEEEE-eCCEEEEEECCCCCEEEEE-ecCC--CCCE--EEEEEcCCeEEEEEECCCc-----
Confidence             00111    2223455555444 5678999999887632111 2222  0111  2333456676665543332     


Q ss_pred             eeEEEee
Q 040781          273 LKIWQVN  279 (316)
Q Consensus       273 ~~iw~l~  279 (316)
                      +.||.+|
T Consensus       347 ~~l~~~d  353 (355)
T d1nexb2         347 SFLEILD  353 (355)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            6677776

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.70  E-value=4.8  Score=31.70  Aligned_cols=103  Identities=12%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             CEEEEEc-CCceeeeecCCCCceeecCCCCCCCCCCEEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCCc
Q 040781          114 TLLYTLS-PSKLSFSFDPLHLAWHHVDAPRVWRTDPVVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMPA  191 (316)
Q Consensus       114 ~~l~~~g-g~~~~~v~np~t~~w~~lp~~~~~~~~~~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p~  191 (316)
                      +.+++.| ..+.+.+||..+++......-..... ..+... ....++.|+      ....+.++|..+..-........
T Consensus       133 ~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~~~~~~~------~~~~i~~~d~~~~~~~~~~~~~~  205 (388)
T d1erja_         133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDI-YSLDYFPSGDKLVSGS------GDRTVRIWDLRTGQCSLTLSIED  205 (388)
T ss_dssp             SSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE-EEEEECTTSSEEEEEE------TTSEEEEEETTTTEEEEEEECSS
T ss_pred             CCcceecccccccccccccccccccccccccccc-cccccccccccccccc------cceeeeeeecccccccccccccc
Confidence            4334444 34688999988876644321111100 011111 222333333      23457788877654333211111


Q ss_pred             ccccCccccceeEEE--eCCEEEEEecccceEEEeeCCCCCc
Q 040781          192 VLKDSAASTWLSVAV--NSRQLYVTEKYSGITVSFDPSTKGW  231 (316)
Q Consensus       192 ~~~~~~~~~~~~~~~--~~~~~y~~~~~~~~i~~yD~~~~~W  231 (316)
                        .  ..    .+..  .++.+.+.++..+.|..||..+...
T Consensus       206 --~--~~----~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~  239 (388)
T d1erja_         206 --G--VT----TVAVSPGDGKYIAAGSLDRAVRVWDSETGFL  239 (388)
T ss_dssp             --C--EE----EEEECSTTCCEEEEEETTSCEEEEETTTCCE
T ss_pred             --c--cc----cccccCCCCCeEEEEcCCCeEEEeecccCcc
Confidence              0  00    1111  2455666666777889999987663

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.42  E-value=7.7  Score=29.14  Aligned_cols=103  Identities=10%  Similarity=0.006  Sum_probs=51.8

Q ss_pred             CEEEEEcCCceeeeecCCCCceeecCCCCCCCCCC--EEEEE-CCEEEEEcCcCCCCCCCcEEEEEeCCCCCeeecCCCC
Q 040781          114 TLLYTLSPSKLSFSFDPLHLAWHHVDAPRVWRTDP--VVALV-GDKVVVAGGACDFEDDPLAVEMYSVDTRTWEICQSMP  190 (316)
Q Consensus       114 ~~l~~~gg~~~~~v~np~t~~w~~lp~~~~~~~~~--~~~~~-~~~v~~~gg~~~~~~~~~~v~vy~~~t~~W~~~~~~p  190 (316)
                      ..++..+..+.+.+||..++...............  .++.. +++.++.|+.+      ..+.+||..+.+........
T Consensus       192 ~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~d------g~i~iwd~~~~~~~~~~~~~  265 (299)
T d1nr0a2         192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLD------NSVIVWNMNKPSDHPIIIKG  265 (299)
T ss_dssp             SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTCTTSCCEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccceEEEcCC------CEEEEEECCCCCcceEEEec
Confidence            44444444578999998877654332211111222  22222 45566666532      34889998876644331110


Q ss_pred             cccccCccccceeEEEeCCEEEEEecccceEEEeeC
Q 040781          191 AVLKDSAASTWLSVAVNSRQLYVTEKYSGITVSFDP  226 (316)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~i~~yD~  226 (316)
                      .   .... ....++..++.+.+.++..+.|..||+
T Consensus       266 ~---~~~~-~v~~~~~~~~~~l~s~s~D~~i~iWdl  297 (299)
T d1nr0a2         266 A---HAMS-SVNSVIWLNETTIVSAGQDSNIKFWNV  297 (299)
T ss_dssp             S---STTS-CEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             C---CCCC-cEEEEEECCCCEEEEEeCCCEEEEEec
Confidence            1   0000 011333344445556667778888886